Query 001066
Match_columns 1167
No_of_seqs 738 out of 4539
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 09:18:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001066.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001066hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 7E-52 2.4E-56 516.0 24.6 371 678-1164 196-566 (806)
2 3cf2_A TER ATPase, transitiona 100.0 2E-41 6.8E-46 422.2 14.0 359 596-962 384-752 (806)
3 4b4t_J 26S protease regulatory 100.0 8.5E-40 2.9E-44 378.9 25.6 247 679-954 141-390 (405)
4 4b4t_I 26S protease regulatory 100.0 3.6E-39 1.2E-43 374.6 23.8 248 679-955 175-425 (437)
5 4b4t_M 26S protease regulatory 100.0 1E-38 3.4E-43 374.5 24.4 250 679-957 174-426 (434)
6 4b4t_L 26S protease subunit RP 100.0 2.1E-38 7.2E-43 372.1 24.8 248 679-955 174-424 (437)
7 4b4t_H 26S protease regulatory 100.0 4.3E-38 1.5E-42 368.7 24.9 246 679-953 202-450 (467)
8 4b4t_K 26S protease regulatory 100.0 1.4E-37 4.8E-42 364.6 24.9 245 679-952 165-413 (428)
9 1ypw_A Transitional endoplasmi 100.0 6.2E-36 2.1E-40 377.3 22.7 369 680-1164 198-566 (806)
10 2ce7_A Cell division protein F 100.0 4.3E-34 1.5E-38 339.8 27.6 356 681-1057 11-373 (476)
11 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.6E-31 5.5E-36 303.7 24.1 285 680-971 6-319 (322)
12 2dhr_A FTSH; AAA+ protein, hex 100.0 5.9E-31 2E-35 314.6 25.9 350 681-1057 26-386 (499)
13 3eie_A Vacuolar protein sortin 100.0 3.7E-31 1.3E-35 300.1 21.0 276 679-962 11-307 (322)
14 2x8a_A Nuclear valosin-contain 100.0 5.6E-31 1.9E-35 292.9 21.4 263 681-960 5-271 (274)
15 3cf0_A Transitional endoplasmi 100.0 7.5E-31 2.6E-35 295.0 19.0 275 680-960 9-288 (301)
16 2qp9_X Vacuolar protein sortin 100.0 1.7E-30 5.7E-35 299.1 21.4 283 681-971 46-351 (355)
17 2zan_A Vacuolar protein sortin 100.0 1.1E-29 3.8E-34 300.6 21.0 285 680-971 128-441 (444)
18 3hu3_A Transitional endoplasmi 100.0 9.5E-30 3.3E-34 304.2 16.1 263 683-957 201-463 (489)
19 3b9p_A CG5977-PA, isoform A; A 100.0 6.8E-28 2.3E-32 268.6 21.9 272 681-971 16-292 (297)
20 3h4m_A Proteasome-activating n 100.0 1.1E-27 3.9E-32 264.9 23.0 245 680-953 11-258 (285)
21 3d8b_A Fidgetin-like protein 1 100.0 8.9E-28 3E-32 276.4 21.1 271 682-971 80-354 (357)
22 1lv7_A FTSH; alpha/beta domain 100.0 4.5E-27 1.5E-31 257.1 23.0 243 681-953 7-252 (257)
23 1ypw_A Transitional endoplasmi 99.9 6.1E-30 2.1E-34 322.8 -0.3 309 600-916 388-704 (806)
24 2qz4_A Paraplegin; AAA+, SPG7, 99.9 2E-27 6.7E-32 258.9 19.0 226 682-913 2-232 (262)
25 3vfd_A Spastin; ATPase, microt 99.9 3.6E-27 1.2E-31 274.1 21.6 260 681-959 110-371 (389)
26 1r6b_X CLPA protein; AAA+, N-t 99.9 5.8E-25 2E-29 276.1 27.5 230 683-953 183-433 (758)
27 1ixz_A ATP-dependent metallopr 99.9 4.1E-25 1.4E-29 241.1 22.0 229 679-914 9-240 (254)
28 2r62_A Cell division protease 99.9 8.4E-27 2.9E-31 255.9 3.3 247 681-957 6-257 (268)
29 1iy2_A ATP-dependent metallopr 99.9 5.7E-24 2E-28 235.7 22.2 227 681-914 35-264 (278)
30 3pxi_A Negative regulator of g 99.9 5.8E-24 2E-28 267.2 21.6 193 683-913 177-388 (758)
31 1qvr_A CLPB protein; coiled co 99.9 8.8E-23 3E-27 259.6 27.3 208 683-913 167-395 (854)
32 3t15_A Ribulose bisphosphate c 99.8 1.8E-21 6.2E-26 218.1 8.2 175 715-901 31-222 (293)
33 3syl_A Protein CBBX; photosynt 99.8 4.5E-19 1.5E-23 198.0 16.7 217 687-913 32-265 (309)
34 2c9o_A RUVB-like 1; hexameric 99.8 8.2E-20 2.8E-24 216.8 0.8 204 680-905 31-262 (456)
35 3uk6_A RUVB-like 2; hexameric 99.7 3.8E-17 1.3E-21 186.8 18.8 223 680-952 38-329 (368)
36 3pfi_A Holliday junction ATP-d 99.7 4.6E-16 1.6E-20 176.2 20.6 196 683-913 26-237 (338)
37 1d2n_A N-ethylmaleimide-sensit 99.7 1.2E-16 3.9E-21 176.2 15.2 227 662-907 12-246 (272)
38 1ofh_A ATP-dependent HSL prote 99.7 7.1E-17 2.4E-21 179.4 13.6 243 687-953 16-299 (310)
39 2chg_A Replication factor C sm 99.7 2E-15 7E-20 157.6 19.7 190 683-908 14-209 (226)
40 3m6a_A ATP-dependent protease 99.6 3.7E-16 1.3E-20 189.4 13.8 230 685-954 80-342 (543)
41 2z4s_A Chromosomal replication 99.6 2.4E-15 8.3E-20 177.8 19.2 209 682-914 101-317 (440)
42 1hqc_A RUVB; extended AAA-ATPa 99.6 2.4E-15 8E-20 168.8 18.1 194 683-910 9-218 (324)
43 3hws_A ATP-dependent CLP prote 99.6 1.1E-15 3.6E-20 175.8 13.7 220 688-914 17-326 (363)
44 3pxg_A Negative regulator of g 99.6 1.4E-15 4.8E-20 181.2 14.5 190 683-910 177-385 (468)
45 1l8q_A Chromosomal replication 99.6 5.9E-15 2E-19 166.6 18.2 199 683-909 8-214 (324)
46 3bos_A Putative DNA replicatio 99.6 8.6E-15 2.9E-19 155.8 17.0 193 683-912 25-226 (242)
47 1njg_A DNA polymerase III subu 99.6 8.9E-15 3E-19 154.2 15.5 190 683-907 20-232 (250)
48 3pvs_A Replication-associated 99.6 9.7E-15 3.3E-19 173.0 16.8 185 683-911 23-223 (447)
49 2v1u_A Cell division control p 99.6 2.6E-14 9E-19 163.0 19.7 211 685-913 18-259 (387)
50 1g41_A Heat shock protein HSLU 99.6 4.9E-16 1.7E-20 182.9 5.1 169 687-869 16-189 (444)
51 1jbk_A CLPB protein; beta barr 99.6 3.5E-15 1.2E-19 152.2 10.3 163 683-868 19-194 (195)
52 1g8p_A Magnesium-chelatase 38 99.6 1.4E-14 4.8E-19 164.1 15.0 206 681-914 19-306 (350)
53 4fcw_A Chaperone protein CLPB; 99.6 1.6E-14 5.6E-19 161.1 14.3 207 687-912 18-280 (311)
54 3u61_B DNA polymerase accessor 99.6 3.6E-14 1.2E-18 159.9 16.5 179 683-900 23-214 (324)
55 3te6_A Regulatory protein SIR3 99.5 2.6E-14 8.7E-19 162.0 15.0 201 688-912 22-288 (318)
56 1um8_A ATP-dependent CLP prote 99.5 5.4E-14 1.9E-18 162.2 16.2 219 687-913 22-342 (376)
57 2qby_B CDC6 homolog 3, cell di 99.5 6.2E-14 2.1E-18 160.6 15.7 200 686-911 20-253 (384)
58 2r44_A Uncharacterized protein 99.5 2.7E-13 9.1E-18 153.4 19.7 152 685-874 26-200 (331)
59 1sxj_B Activator 1 37 kDa subu 99.5 1.3E-13 4.3E-18 153.9 15.9 188 683-906 18-212 (323)
60 1sxj_D Activator 1 41 kDa subu 99.5 1.1E-13 3.7E-18 156.8 15.4 197 683-911 34-243 (353)
61 3pxi_A Negative regulator of g 99.5 6.8E-14 2.3E-18 175.9 14.7 203 686-911 491-725 (758)
62 1iqp_A RFCS; clamp loader, ext 99.5 1.4E-13 4.9E-18 153.7 15.6 192 683-906 22-215 (327)
63 1sxj_A Activator 1 95 kDa subu 99.5 9E-14 3.1E-18 167.5 14.9 199 683-900 36-250 (516)
64 2chq_A Replication factor C sm 99.5 6E-14 2.1E-18 156.2 11.6 192 683-906 14-207 (319)
65 1in4_A RUVB, holliday junction 99.5 1.3E-12 4.3E-17 148.9 22.1 196 683-913 22-233 (334)
66 1fnn_A CDC6P, cell division co 99.5 1E-12 3.6E-17 150.3 20.4 207 685-914 16-258 (389)
67 1r6b_X CLPA protein; AAA+, N-t 99.5 1.6E-13 5.5E-18 172.4 14.5 198 686-911 458-716 (758)
68 2p65_A Hypothetical protein PF 99.5 9.7E-14 3.3E-18 141.5 9.7 155 684-860 20-187 (187)
69 1jr3_A DNA polymerase III subu 99.5 5.2E-13 1.8E-17 152.3 16.6 192 683-909 13-227 (373)
70 2qby_A CDC6 homolog 1, cell di 99.4 7.2E-13 2.5E-17 150.8 16.7 210 684-913 18-255 (386)
71 2bjv_A PSP operon transcriptio 99.4 4.2E-13 1.4E-17 147.0 12.0 199 683-910 3-240 (265)
72 4b4t_J 26S protease regulatory 99.4 9.8E-14 3.4E-18 161.2 7.3 68 1091-1164 170-237 (405)
73 1sxj_E Activator 1 40 kDa subu 99.4 1.1E-12 3.7E-17 149.2 14.0 192 683-908 11-242 (354)
74 1sxj_C Activator 1 40 kDa subu 99.4 2.3E-12 7.8E-17 146.6 14.6 180 683-897 22-207 (340)
75 1qvr_A CLPB protein; coiled co 99.4 1.3E-12 4.5E-17 166.4 13.9 207 685-912 557-821 (854)
76 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 1.1E-12 3.8E-17 157.1 11.4 195 688-914 24-270 (500)
77 4akg_A Glutathione S-transfera 99.4 1.9E-11 6.5E-16 168.7 24.9 138 719-874 1266-1433(2695)
78 4b4t_M 26S protease regulatory 99.3 4.8E-13 1.7E-17 157.2 6.9 67 1092-1164 204-270 (434)
79 4b4t_I 26S protease regulatory 99.3 4.6E-13 1.6E-17 156.1 6.6 67 1092-1164 205-271 (437)
80 4b4t_L 26S protease subunit RP 99.3 6.3E-13 2.1E-17 156.4 6.8 68 1091-1164 203-270 (437)
81 4b4t_H 26S protease regulatory 99.3 5.9E-13 2E-17 156.6 6.5 68 1091-1164 231-298 (467)
82 4b4t_K 26S protease regulatory 99.3 6.4E-13 2.2E-17 156.1 6.7 68 1091-1164 194-261 (428)
83 1ojl_A Transcriptional regulat 99.3 1.3E-12 4.5E-17 147.1 8.4 194 687-910 3-235 (304)
84 3f9v_A Minichromosome maintena 99.3 1.1E-12 3.7E-17 160.7 3.0 163 688-874 297-492 (595)
85 2lq6_A Bromodomain-containing 99.2 5.7E-13 2E-17 123.0 -1.3 58 542-599 11-84 (87)
86 1a5t_A Delta prime, HOLB; zinc 99.2 5.8E-11 2E-15 135.2 14.6 173 691-899 7-202 (334)
87 3k1j_A LON protease, ATP-depen 99.2 7.2E-11 2.5E-15 144.9 15.5 205 682-914 37-359 (604)
88 3cmw_A Protein RECA, recombina 99.2 3.6E-12 1.2E-16 169.2 2.8 54 1107-1163 1083-1155(1706)
89 4akg_A Glutathione S-transfera 99.1 1.7E-09 5.9E-14 149.5 26.0 125 720-870 645-791 (2695)
90 1w5s_A Origin recognition comp 99.1 6.8E-10 2.3E-14 128.1 16.9 214 686-914 22-277 (412)
91 3n70_A Transport activator; si 99.1 8.8E-11 3E-15 117.6 7.8 115 687-837 2-116 (145)
92 3co5_A Putative two-component 99.1 1.8E-11 6.3E-16 122.4 2.0 112 687-837 5-116 (143)
93 2gno_A DNA polymerase III, gam 99.0 1.5E-09 5.2E-14 122.4 14.0 147 690-872 1-152 (305)
94 3cmw_A Protein RECA, recombina 99.0 4.8E-10 1.6E-14 149.2 10.6 158 679-837 1013-1218(1706)
95 3t15_A Ribulose bisphosphate c 98.9 5.6E-10 1.9E-14 124.9 6.1 54 1109-1164 38-91 (293)
96 3vkg_A Dynein heavy chain, cyt 98.8 8.1E-08 2.8E-12 133.9 23.8 137 719-873 1303-1470(3245)
97 3cf0_A Transitional endoplasmi 98.8 2.5E-09 8.5E-14 119.9 5.8 54 1109-1164 51-104 (301)
98 3eie_A Vacuolar protein sortin 98.8 3.8E-09 1.3E-13 119.4 7.2 54 1109-1164 53-106 (322)
99 1xwi_A SKD1 protein; VPS4B, AA 98.8 2.8E-09 9.7E-14 120.8 5.5 55 1109-1164 47-101 (322)
100 2x8a_A Nuclear valosin-contain 98.8 4.6E-09 1.6E-13 116.5 6.6 65 1094-1164 35-99 (274)
101 1ny5_A Transcriptional regulat 98.8 6.8E-09 2.3E-13 120.7 8.2 194 687-910 138-370 (387)
102 2qp9_X Vacuolar protein sortin 98.7 8.8E-09 3E-13 118.3 7.5 54 1109-1164 86-139 (355)
103 3vkg_A Dynein heavy chain, cyt 98.7 8.2E-07 2.8E-11 124.0 26.6 124 721-870 605-751 (3245)
104 3dzd_A Transcriptional regulat 98.7 1.9E-08 6.4E-13 116.3 8.2 192 687-909 130-360 (368)
105 2qen_A Walker-type ATPase; unk 98.7 8.8E-07 3E-11 99.2 21.2 190 685-904 11-247 (350)
106 2c9o_A RUVB-like 1; hexameric 98.7 1.3E-08 4.3E-13 120.9 6.1 55 1109-1164 65-119 (456)
107 3ec2_A DNA replication protein 98.6 4.6E-08 1.6E-12 100.6 8.6 131 683-837 7-143 (180)
108 2zan_A Vacuolar protein sortin 98.6 1.4E-08 4.8E-13 120.1 3.7 55 1109-1164 169-223 (444)
109 3h4m_A Proteasome-activating n 98.6 3.8E-08 1.3E-12 108.3 7.0 54 1109-1164 53-106 (285)
110 3f8t_A Predicted ATPase involv 98.6 4.6E-07 1.6E-11 106.8 16.2 146 688-862 215-384 (506)
111 1lv7_A FTSH; alpha/beta domain 98.6 2.9E-08 9.8E-13 108.1 5.4 54 1109-1164 47-100 (257)
112 2qz4_A Paraplegin; AAA+, SPG7, 98.6 3.4E-08 1.2E-12 106.9 5.7 54 1109-1164 41-94 (262)
113 2kjq_A DNAA-related protein; s 98.5 8.3E-08 2.8E-12 96.9 6.6 106 719-854 35-143 (149)
114 3hu3_A Transitional endoplasmi 98.5 8.2E-08 2.8E-12 114.9 7.2 54 1109-1164 240-293 (489)
115 2fna_A Conserved hypothetical 98.5 2.2E-06 7.5E-11 96.1 18.0 187 684-905 11-252 (357)
116 3d8b_A Fidgetin-like protein 1 98.5 9.3E-08 3.2E-12 109.8 6.7 54 1109-1164 119-172 (357)
117 2ce7_A Cell division protein F 98.5 9.9E-08 3.4E-12 113.7 6.7 54 1109-1164 51-104 (476)
118 3b9p_A CG5977-PA, isoform A; A 98.5 1E-07 3.5E-12 105.7 6.1 54 1109-1164 56-109 (297)
119 3syl_A Protein CBBX; photosynt 98.4 1.4E-07 4.9E-12 104.9 6.2 56 1109-1164 69-129 (309)
120 3vfd_A Spastin; ATPase, microt 98.4 1.1E-07 3.7E-12 110.3 5.3 54 1109-1164 150-203 (389)
121 2dhr_A FTSH; AAA+ protein, hex 98.4 1.9E-07 6.6E-12 111.9 7.0 54 1109-1164 66-119 (499)
122 2vhj_A Ntpase P4, P4; non- hyd 98.4 1.8E-07 6E-12 105.9 6.2 122 716-843 119-241 (331)
123 1g41_A Heat shock protein HSLU 98.4 2.1E-07 7.3E-12 109.7 6.2 54 1109-1164 52-107 (444)
124 1ixz_A ATP-dependent metallopr 98.4 3.2E-07 1.1E-11 99.5 7.0 54 1109-1164 51-104 (254)
125 3kw6_A 26S protease regulatory 98.4 5.3E-07 1.8E-11 81.1 7.0 73 857-953 1-73 (78)
126 2krk_A 26S protease regulatory 98.4 3.2E-07 1.1E-11 84.5 5.7 77 855-955 7-83 (86)
127 2r62_A Cell division protease 98.3 3.4E-08 1.2E-12 107.8 -2.6 53 1110-1164 47-99 (268)
128 2w58_A DNAI, primosome compone 98.3 6E-07 2.1E-11 93.8 6.5 74 720-797 54-128 (202)
129 3hws_A ATP-dependent CLP prote 98.3 5.5E-07 1.9E-11 103.3 6.1 54 1109-1164 53-108 (363)
130 1iy2_A ATP-dependent metallopr 98.2 9.4E-07 3.2E-11 97.5 7.1 54 1109-1164 75-128 (278)
131 3vlf_B 26S protease regulatory 98.2 2.1E-06 7.3E-11 79.2 7.0 74 860-957 2-75 (88)
132 3aji_B S6C, proteasome (prosom 98.1 2.4E-06 8.1E-11 77.7 5.7 75 860-958 2-76 (83)
133 1jr3_D DNA polymerase III, del 98.1 2.2E-05 7.4E-10 89.1 14.1 164 719-909 17-191 (343)
134 2qgz_A Helicase loader, putati 98.1 1.7E-06 5.7E-11 97.6 4.7 74 720-797 152-227 (308)
135 1jbk_A CLPB protein; beta barr 98.1 4.2E-06 1.4E-10 84.6 6.9 55 1109-1163 45-109 (195)
136 3cmu_A Protein RECA, recombina 98.1 7.4E-06 2.5E-10 110.8 10.8 120 716-836 1423-1562(2050)
137 2p65_A Hypothetical protein PF 98.0 4.5E-06 1.5E-10 84.5 6.0 56 1109-1164 45-110 (187)
138 1d2n_A N-ethylmaleimide-sensit 98.0 4.9E-06 1.7E-10 91.2 6.4 50 1109-1163 66-119 (272)
139 1ofh_A ATP-dependent HSL prote 98.0 4.4E-06 1.5E-10 92.4 5.9 52 1110-1163 53-106 (310)
140 1um8_A ATP-dependent CLP prote 98.0 5E-06 1.7E-10 95.6 6.3 53 1109-1163 74-128 (376)
141 3uk6_A RUVB-like 2; hexameric 98.0 5.8E-06 2E-10 94.1 6.5 54 1109-1163 72-125 (368)
142 2r2a_A Uncharacterized protein 97.9 5.8E-06 2E-10 87.6 5.0 130 721-861 6-155 (199)
143 1svm_A Large T antigen; AAA+ f 97.9 1.2E-05 4E-10 93.3 7.9 119 716-858 165-284 (377)
144 3pxg_A Negative regulator of g 97.9 4.7E-06 1.6E-10 99.2 3.1 54 1107-1164 201-263 (468)
145 1tue_A Replication protein E1; 97.8 2E-05 6.9E-10 83.8 7.3 29 717-745 55-83 (212)
146 3m6a_A ATP-dependent protease 97.7 1.5E-05 5.1E-10 96.7 4.9 55 1108-1164 109-172 (543)
147 1ye8_A Protein THEP1, hypothet 97.7 0.00028 9.7E-09 73.1 12.6 24 722-745 2-25 (178)
148 1l8q_A Chromosomal replication 97.6 3.3E-05 1.1E-09 86.8 5.4 53 1109-1161 39-92 (324)
149 3co5_A Putative two-component 97.6 1.2E-05 4.1E-10 80.0 0.9 39 1107-1149 28-66 (143)
150 3te6_A Regulatory protein SIR3 97.6 4.2E-05 1.4E-09 86.7 5.1 57 1107-1163 45-125 (318)
151 1u0j_A DNA replication protein 97.6 0.00012 4.1E-09 80.9 8.2 28 718-745 102-129 (267)
152 1z6t_A APAF-1, apoptotic prote 97.5 0.0012 4.1E-08 80.0 17.4 180 685-903 123-328 (591)
153 3hr8_A Protein RECA; alpha and 97.5 0.00032 1.1E-08 80.6 11.5 118 716-833 57-194 (356)
154 2dzn_B 26S protease regulatory 97.5 3E-05 1E-09 70.4 2.3 69 862-954 1-69 (82)
155 2w0m_A SSO2452; RECA, SSPF, un 97.5 0.00018 6E-09 75.7 8.1 40 716-755 19-58 (235)
156 3n70_A Transport activator; si 97.4 4.6E-05 1.6E-09 75.9 2.8 40 1107-1148 25-65 (145)
157 1n0w_A DNA repair protein RAD5 97.4 0.0004 1.4E-08 73.9 9.2 29 716-744 20-48 (243)
158 2a5y_B CED-4; apoptosis; HET: 97.4 0.0016 5.4E-08 78.8 15.6 178 689-902 131-336 (549)
159 1xp8_A RECA protein, recombina 97.4 0.00064 2.2E-08 78.4 11.4 119 716-834 70-208 (366)
160 3sfz_A APAF-1, apoptotic pepti 97.3 0.0037 1.3E-07 81.7 19.7 179 685-902 123-327 (1249)
161 3pvs_A Replication-associated 97.3 0.00017 6E-09 85.3 6.4 47 1108-1163 51-97 (447)
162 2zr9_A Protein RECA, recombina 97.3 0.00028 9.7E-09 80.9 7.8 83 716-798 57-153 (349)
163 2w58_A DNAI, primosome compone 97.3 0.00016 5.5E-09 75.2 4.5 42 1109-1150 56-98 (202)
164 1u0j_A DNA replication protein 97.3 0.0001 3.5E-09 81.4 3.1 54 1109-1162 106-172 (267)
165 2z4s_A Chromosomal replication 97.3 0.00013 4.4E-09 86.1 4.2 47 1110-1156 133-182 (440)
166 4fcw_A Chaperone protein CLPB; 97.3 0.00015 5E-09 80.4 4.4 38 1110-1147 50-88 (311)
167 2ku3_A Bromodomain-containing 97.2 0.00015 5.1E-09 64.3 3.4 51 439-489 10-60 (71)
168 3ec2_A DNA replication protein 97.2 0.00012 4.1E-09 75.0 3.2 41 1109-1150 40-83 (180)
169 2qgz_A Helicase loader, putati 97.2 0.00018 6.1E-09 81.0 4.9 42 1109-1151 154-198 (308)
170 3pfi_A Holliday junction ATP-d 97.2 0.00025 8.7E-09 79.8 6.1 34 1110-1145 58-91 (338)
171 1sxj_A Activator 1 95 kDa subu 97.2 0.00012 4.2E-09 88.0 3.6 42 1109-1152 79-120 (516)
172 2bjv_A PSP operon transcriptio 97.2 0.00018 6.2E-09 78.3 4.6 36 1110-1145 32-68 (265)
173 2cvh_A DNA repair and recombin 97.2 0.00055 1.9E-08 71.6 8.0 27 716-742 16-42 (220)
174 2l43_A N-teminal domain from h 97.2 0.00018 6.2E-09 66.4 3.7 52 438-489 18-69 (88)
175 3bos_A Putative DNA replicatio 97.2 0.00026 9E-09 74.6 5.3 41 1109-1149 54-95 (242)
176 2r44_A Uncharacterized protein 97.2 0.00016 5.4E-09 81.4 3.7 31 1110-1142 49-79 (331)
177 1u94_A RECA protein, recombina 97.2 0.00063 2.2E-08 78.2 8.5 83 716-798 59-155 (356)
178 3dm5_A SRP54, signal recogniti 97.0 0.0044 1.5E-07 73.1 14.1 78 719-796 99-194 (443)
179 2vhj_A Ntpase P4, P4; non- hyd 97.0 0.00038 1.3E-08 78.8 4.8 55 1109-1163 125-179 (331)
180 1hqc_A RUVB; extended AAA-ATPa 97.0 0.00036 1.2E-08 77.7 4.3 34 1110-1145 41-74 (324)
181 3u61_B DNA polymerase accessor 97.0 0.00048 1.6E-08 77.1 5.2 33 1110-1144 51-83 (324)
182 2z43_A DNA repair and recombin 97.0 0.00091 3.1E-08 75.6 7.2 83 716-798 103-217 (324)
183 1tue_A Replication protein E1; 97.0 0.00031 1.1E-08 74.7 3.1 25 1109-1133 60-84 (212)
184 3nbx_X ATPase RAVA; AAA+ ATPas 96.9 0.00034 1.2E-08 83.9 3.6 45 1110-1154 44-93 (500)
185 3upu_A ATP-dependent DNA helic 96.9 0.00074 2.5E-08 79.9 6.3 27 722-748 47-73 (459)
186 1v5w_A DMC1, meiotic recombina 96.9 0.0015 5.2E-08 74.4 8.6 30 716-745 118-147 (343)
187 2dr3_A UPF0273 protein PH0284; 96.9 0.0038 1.3E-07 66.3 10.7 40 716-755 19-58 (247)
188 3io5_A Recombination and repai 96.8 0.0019 6.6E-08 73.0 8.0 81 716-798 25-125 (333)
189 3cmu_A Protein RECA, recombina 96.8 0.0021 7.2E-08 87.4 9.5 83 716-798 1077-1173(2050)
190 2ehv_A Hypothetical protein PH 96.8 0.0018 6.2E-08 69.0 7.1 27 716-742 26-52 (251)
191 3lda_A DNA repair protein RAD5 96.7 0.0024 8.2E-08 74.5 8.6 120 716-835 174-326 (400)
192 4a74_A DNA repair and recombin 96.7 0.0017 5.8E-08 68.3 6.7 30 716-745 21-50 (231)
193 1in4_A RUVB, holliday junction 96.7 0.00069 2.4E-08 76.8 3.9 34 1110-1145 54-87 (334)
194 1g5t_A COB(I)alamin adenosyltr 96.7 0.0053 1.8E-07 64.8 10.3 107 721-837 29-163 (196)
195 1qhx_A CPT, protein (chloramph 96.7 0.0012 4.3E-08 66.8 5.2 35 1110-1146 6-40 (178)
196 2chg_A Replication factor C sm 96.7 0.00082 2.8E-08 69.3 3.9 37 1109-1145 40-79 (226)
197 2b8t_A Thymidine kinase; deoxy 96.7 0.0025 8.4E-08 68.7 7.5 76 721-797 13-102 (223)
198 3kl4_A SRP54, signal recogniti 96.7 0.0065 2.2E-07 71.5 11.6 78 719-796 96-191 (433)
199 2r6a_A DNAB helicase, replicat 96.6 0.0031 1.1E-07 74.6 8.8 41 716-756 199-240 (454)
200 2chq_A Replication factor C sm 96.6 0.0016 5.5E-08 71.9 5.8 39 1107-1145 38-79 (319)
201 1sxj_D Activator 1 41 kDa subu 96.6 0.0012 3.9E-08 74.3 4.7 37 1108-1144 59-99 (353)
202 2r8r_A Sensor protein; KDPD, P 96.6 0.009 3.1E-07 64.4 11.2 39 720-758 6-44 (228)
203 2orw_A Thymidine kinase; TMTK, 96.6 0.0018 6.1E-08 67.4 5.6 25 721-745 4-28 (184)
204 3bh0_A DNAB-like replicative h 96.6 0.0056 1.9E-07 68.9 10.0 41 716-756 64-104 (315)
205 1nlf_A Regulatory protein REPA 96.6 0.0038 1.3E-07 68.6 8.5 31 716-746 26-56 (279)
206 3vaa_A Shikimate kinase, SK; s 96.6 0.0016 5.3E-08 68.0 5.0 40 1109-1152 27-66 (199)
207 1g8p_A Magnesium-chelatase 38 96.6 0.00065 2.2E-08 76.4 2.2 22 1110-1131 48-69 (350)
208 3iij_A Coilin-interacting nucl 96.5 0.0016 5.4E-08 66.5 4.4 34 1109-1146 13-46 (180)
209 3trf_A Shikimate kinase, SK; a 96.5 0.0016 5.5E-08 66.5 4.5 41 1109-1153 7-47 (185)
210 1ojl_A Transcriptional regulat 96.5 0.001 3.5E-08 74.6 3.2 36 1110-1145 28-64 (304)
211 2eyu_A Twitching motility prot 96.5 0.0018 6.1E-08 71.2 4.8 77 718-794 23-108 (261)
212 2iut_A DNA translocase FTSK; n 96.5 0.0098 3.4E-07 72.1 11.5 74 786-869 345-420 (574)
213 1sxj_C Activator 1 40 kDa subu 96.5 0.0014 4.6E-08 74.2 3.9 37 1108-1144 47-86 (340)
214 2q6t_A DNAB replication FORK h 96.4 0.006 2.1E-07 71.9 9.4 41 716-756 196-237 (444)
215 1pzn_A RAD51, DNA repair and r 96.4 0.0049 1.7E-07 70.5 8.3 29 716-744 127-155 (349)
216 2ysm_A Myeloid/lymphoid or mix 96.4 0.0056 1.9E-07 58.6 7.4 95 444-598 6-103 (111)
217 1qhx_A CPT, protein (chloramph 96.4 0.0049 1.7E-07 62.4 7.3 25 721-745 4-28 (178)
218 1cr0_A DNA primase/helicase; R 96.4 0.0061 2.1E-07 67.4 8.7 40 716-755 31-71 (296)
219 2v1u_A Cell division control p 96.4 0.0018 6.2E-08 73.2 4.4 36 1109-1144 46-88 (387)
220 3e1s_A Exodeoxyribonuclease V, 96.4 0.0019 6.4E-08 78.9 4.7 33 721-753 205-237 (574)
221 1iqp_A RFCS; clamp loader, ext 96.4 0.0015 5.2E-08 72.3 3.6 38 1108-1145 47-87 (327)
222 2qby_B CDC6 homolog 3, cell di 96.4 0.0024 8.1E-08 72.6 5.1 36 1110-1145 48-92 (384)
223 2i1q_A DNA repair and recombin 96.3 0.003 1E-07 70.9 5.8 29 716-744 94-122 (322)
224 1vma_A Cell division protein F 96.3 0.031 1.1E-06 62.9 14.0 78 718-795 102-197 (306)
225 1sxj_B Activator 1 37 kDa subu 96.3 0.0016 5.4E-08 72.0 3.3 37 1108-1144 43-82 (323)
226 2iyv_A Shikimate kinase, SK; t 96.3 0.0017 5.9E-08 66.3 3.4 32 1109-1142 4-35 (184)
227 2di4_A Zinc protease, cell div 96.3 0.0021 7.1E-08 69.8 4.0 95 959-1057 21-118 (238)
228 2kjq_A DNAA-related protein; s 96.3 0.0019 6.6E-08 64.8 3.4 39 1108-1147 37-77 (149)
229 1y63_A LMAJ004144AAA protein; 96.3 0.0027 9.1E-08 65.4 4.6 36 1108-1147 11-47 (184)
230 1via_A Shikimate kinase; struc 96.3 0.0021 7.3E-08 65.3 3.8 35 1110-1148 7-41 (175)
231 1kag_A SKI, shikimate kinase I 96.3 0.0033 1.1E-07 63.3 5.0 35 1110-1148 7-41 (173)
232 1aky_A Adenylate kinase; ATP:A 96.2 0.0055 1.9E-07 64.6 6.5 36 1109-1148 6-41 (220)
233 3vaa_A Shikimate kinase, SK; s 96.2 0.0029 1E-07 65.9 4.2 29 717-745 22-50 (199)
234 1qf9_A UMP/CMP kinase, protein 96.1 0.0067 2.3E-07 61.7 6.7 51 1109-1163 8-61 (194)
235 3cm0_A Adenylate kinase; ATP-b 96.1 0.0053 1.8E-07 62.6 5.9 51 1109-1163 6-59 (186)
236 2cdn_A Adenylate kinase; phosp 96.1 0.0067 2.3E-07 63.0 6.7 36 1109-1148 22-57 (201)
237 2zts_A Putative uncharacterize 96.1 0.0066 2.3E-07 64.4 6.6 41 716-756 26-67 (251)
238 1vt4_I APAF-1 related killer D 96.1 0.03 1E-06 72.1 13.4 43 689-743 131-173 (1221)
239 1njg_A DNA polymerase III subu 96.1 0.0026 8.9E-08 66.1 3.3 22 1110-1131 48-69 (250)
240 1sxj_E Activator 1 40 kDa subu 96.1 0.0036 1.2E-07 70.6 4.7 25 1107-1131 36-60 (354)
241 3trf_A Shikimate kinase, SK; a 96.1 0.0033 1.1E-07 64.2 4.0 32 720-756 5-36 (185)
242 3jvv_A Twitching mobility prot 96.1 0.0034 1.1E-07 72.2 4.3 73 721-794 124-206 (356)
243 1q57_A DNA primase/helicase; d 96.1 0.015 5.1E-07 69.5 10.1 41 716-756 238-279 (503)
244 1zd8_A GTP:AMP phosphotransfer 96.1 0.0053 1.8E-07 65.2 5.6 37 1109-1149 9-45 (227)
245 2i3b_A HCR-ntpase, human cance 96.0 0.0057 1.9E-07 64.0 5.6 24 722-745 3-26 (189)
246 3kb2_A SPBC2 prophage-derived 96.0 0.0034 1.2E-07 62.8 3.8 31 1110-1142 4-34 (173)
247 2bwj_A Adenylate kinase 5; pho 96.0 0.0063 2.2E-07 62.5 5.9 35 1110-1148 15-49 (199)
248 1e6c_A Shikimate kinase; phosp 96.0 0.0035 1.2E-07 63.0 3.8 38 1110-1151 5-42 (173)
249 2ewv_A Twitching motility prot 96.0 0.0028 9.5E-08 73.2 3.3 83 712-794 128-219 (372)
250 2c95_A Adenylate kinase 1; tra 96.0 0.0093 3.2E-07 61.1 6.9 36 1109-1148 11-46 (196)
251 1ly1_A Polynucleotide kinase; 96.0 0.0031 1.1E-07 63.6 3.2 31 1110-1142 5-36 (181)
252 3bgw_A DNAB-like replicative h 96.0 0.017 5.7E-07 68.3 9.9 41 716-756 193-233 (444)
253 1zak_A Adenylate kinase; ATP:A 96.0 0.0057 1.9E-07 64.6 5.3 35 1110-1148 8-42 (222)
254 2rhm_A Putative kinase; P-loop 96.0 0.0044 1.5E-07 63.4 4.2 28 718-745 3-30 (193)
255 2ius_A DNA translocase FTSK; n 95.9 0.017 5.7E-07 69.4 9.7 74 786-869 299-374 (512)
256 2rhm_A Putative kinase; P-loop 95.9 0.0031 1.1E-07 64.5 3.0 30 1110-1141 8-37 (193)
257 2gno_A DNA polymerase III, gam 95.9 0.0053 1.8E-07 69.0 5.1 53 1107-1164 18-74 (305)
258 1tev_A UMP-CMP kinase; ploop, 95.9 0.004 1.4E-07 63.5 3.8 30 1110-1141 6-35 (196)
259 3crm_A TRNA delta(2)-isopenten 95.9 0.0055 1.9E-07 69.4 4.8 33 1110-1144 8-40 (323)
260 1wev_A Riken cDNA 1110020M19; 95.8 0.0049 1.7E-07 56.8 3.6 40 443-482 14-53 (88)
261 1ak2_A Adenylate kinase isoenz 95.8 0.0046 1.6E-07 66.1 3.9 36 1109-1148 18-53 (233)
262 2qby_A CDC6 homolog 1, cell di 95.8 0.0055 1.9E-07 69.1 4.7 36 1110-1145 48-87 (386)
263 1y63_A LMAJ004144AAA protein; 95.8 0.0067 2.3E-07 62.4 4.9 33 719-756 9-42 (184)
264 3a8t_A Adenylate isopentenyltr 95.8 0.0055 1.9E-07 69.8 4.5 33 1109-1143 42-74 (339)
265 1ukz_A Uridylate kinase; trans 95.8 0.01 3.4E-07 61.6 6.2 35 1109-1147 17-51 (203)
266 1fnn_A CDC6P, cell division co 95.8 0.0062 2.1E-07 69.1 5.0 36 1109-1144 46-83 (389)
267 1kht_A Adenylate kinase; phosp 95.8 0.0045 1.6E-07 63.0 3.5 22 1110-1131 6-27 (192)
268 1zuh_A Shikimate kinase; alpha 95.8 0.007 2.4E-07 60.9 4.8 39 1110-1152 10-48 (168)
269 3iij_A Coilin-interacting nucl 95.8 0.0074 2.5E-07 61.4 5.0 27 719-745 10-36 (180)
270 3v43_A Histone acetyltransfera 95.8 0.011 3.9E-07 56.7 6.0 101 443-598 3-111 (112)
271 3be4_A Adenylate kinase; malar 95.8 0.0049 1.7E-07 65.1 3.7 36 1109-1148 7-42 (217)
272 2px0_A Flagellar biosynthesis 95.7 0.032 1.1E-06 62.3 10.4 40 719-758 104-144 (296)
273 1via_A Shikimate kinase; struc 95.7 0.0066 2.2E-07 61.6 4.3 29 722-755 6-34 (175)
274 2ga8_A Hypothetical 39.9 kDa p 95.7 0.0025 8.6E-08 73.1 1.2 55 1104-1163 21-93 (359)
275 2yt5_A Metal-response element- 95.7 0.0048 1.6E-07 53.5 2.7 38 444-481 5-42 (66)
276 3kb2_A SPBC2 prophage-derived 95.7 0.0069 2.3E-07 60.6 4.2 24 722-745 3-26 (173)
277 2pt5_A Shikimate kinase, SK; a 95.7 0.0085 2.9E-07 60.0 4.8 38 1110-1151 3-40 (168)
278 1kht_A Adenylate kinase; phosp 95.6 0.0092 3.2E-07 60.7 4.9 34 721-754 4-37 (192)
279 2p5t_B PEZT; postsegregational 95.6 0.027 9.2E-07 61.0 8.8 28 718-745 30-57 (253)
280 1nks_A Adenylate kinase; therm 95.6 0.0078 2.7E-07 61.2 4.2 36 1110-1146 4-41 (194)
281 2iyv_A Shikimate kinase, SK; t 95.5 0.0077 2.6E-07 61.4 4.1 30 722-756 4-33 (184)
282 3t61_A Gluconokinase; PSI-biol 95.5 0.0066 2.3E-07 63.1 3.6 30 1110-1141 21-50 (202)
283 1knq_A Gluconate kinase; ALFA/ 95.5 0.011 3.6E-07 59.9 4.8 33 1109-1145 10-42 (175)
284 3foz_A TRNA delta(2)-isopenten 95.4 0.011 3.7E-07 66.6 5.2 35 1109-1145 12-46 (316)
285 3exa_A TRNA delta(2)-isopenten 95.4 0.01 3.4E-07 67.0 4.8 36 1109-1146 5-40 (322)
286 2fz4_A DNA repair protein RAD2 95.4 0.032 1.1E-06 60.0 8.6 23 722-744 110-132 (237)
287 1gvn_B Zeta; postsegregational 95.4 0.031 1.1E-06 62.0 8.8 27 719-745 32-58 (287)
288 1kag_A SKI, shikimate kinase I 95.4 0.011 3.8E-07 59.4 4.7 25 721-745 5-29 (173)
289 3umf_A Adenylate kinase; rossm 95.4 0.011 3.9E-07 63.2 4.9 41 1106-1150 27-68 (217)
290 1zuh_A Shikimate kinase; alpha 95.4 0.009 3.1E-07 60.1 3.9 31 721-756 8-38 (168)
291 1jr3_A DNA polymerase III subu 95.4 0.0069 2.3E-07 68.5 3.4 22 1110-1131 41-62 (373)
292 3uie_A Adenylyl-sulfate kinase 95.4 0.016 5.6E-07 60.2 6.0 46 1109-1155 27-77 (200)
293 4gp7_A Metallophosphoesterase; 95.4 0.003 1E-07 64.5 0.2 22 718-739 7-28 (171)
294 1a5t_A Delta prime, HOLB; zinc 95.4 0.0074 2.5E-07 68.3 3.5 23 1110-1132 27-49 (334)
295 3nwj_A ATSK2; P loop, shikimat 95.3 0.013 4.3E-07 64.2 5.2 40 1110-1153 51-91 (250)
296 2pt7_A CAG-ALFA; ATPase, prote 95.3 0.01 3.5E-07 67.4 4.6 74 719-795 170-251 (330)
297 3f9v_A Minichromosome maintena 95.3 0.0033 1.1E-07 77.0 0.7 28 1110-1139 330-357 (595)
298 4a1f_A DNAB helicase, replicat 95.3 0.0086 2.9E-07 68.3 3.9 41 716-756 42-82 (338)
299 1nks_A Adenylate kinase; therm 95.3 0.012 4.2E-07 59.7 4.8 33 722-754 3-35 (194)
300 3a4m_A L-seryl-tRNA(SEC) kinas 95.3 0.02 6.7E-07 62.5 6.6 50 1109-1159 6-60 (260)
301 3tlx_A Adenylate kinase 2; str 95.3 0.019 6.6E-07 61.9 6.5 36 1109-1148 31-66 (243)
302 2j37_W Signal recognition part 95.3 0.1 3.5E-06 62.6 13.2 78 719-796 100-195 (504)
303 1tev_A UMP-CMP kinase; ploop, 95.2 0.011 3.8E-07 60.2 4.1 26 720-745 3-28 (196)
304 2c95_A Adenylate kinase 1; tra 95.2 0.012 4.2E-07 60.2 4.4 26 720-745 9-34 (196)
305 2cdn_A Adenylate kinase; phosp 95.2 0.012 4.1E-07 61.1 4.3 26 720-745 20-45 (201)
306 1e6c_A Shikimate kinase; phosp 95.2 0.012 4.1E-07 59.1 4.2 24 722-745 4-27 (173)
307 1w36_D RECD, exodeoxyribonucle 95.2 0.023 7.9E-07 69.7 7.3 25 721-745 165-189 (608)
308 3lw7_A Adenylate kinase relate 95.1 0.012 4.1E-07 58.5 3.9 23 722-745 3-25 (179)
309 1aky_A Adenylate kinase; ATP:A 95.1 0.014 4.6E-07 61.6 4.5 26 720-745 4-29 (220)
310 3t61_A Gluconokinase; PSI-biol 95.1 0.016 5.4E-07 60.2 4.9 26 720-745 18-43 (202)
311 2p5t_B PEZT; postsegregational 95.1 0.012 4.1E-07 63.9 4.1 35 1109-1145 34-68 (253)
312 1xx6_A Thymidine kinase; NESG, 95.1 0.015 5.2E-07 61.0 4.6 34 721-754 9-42 (191)
313 2ze6_A Isopentenyl transferase 95.0 0.014 4.7E-07 63.6 4.3 32 722-758 3-34 (253)
314 1zd8_A GTP:AMP phosphotransfer 95.0 0.013 4.4E-07 62.2 4.0 27 719-745 6-32 (227)
315 2bwj_A Adenylate kinase 5; pho 95.0 0.015 5.1E-07 59.7 4.2 26 720-745 12-37 (199)
316 2gxq_A Heat resistant RNA depe 95.0 0.041 1.4E-06 56.7 7.6 19 721-739 39-57 (207)
317 1qf9_A UMP/CMP kinase, protein 95.0 0.017 5.8E-07 58.7 4.6 26 720-745 6-31 (194)
318 2qmh_A HPR kinase/phosphorylas 95.0 0.011 3.9E-07 62.5 3.2 37 1107-1146 34-70 (205)
319 1ly1_A Polynucleotide kinase; 95.0 0.014 4.7E-07 58.8 3.8 22 721-742 3-24 (181)
320 1ls1_A Signal recognition part 95.0 0.23 7.9E-06 55.3 14.1 78 719-796 97-192 (295)
321 3a4m_A L-seryl-tRNA(SEC) kinas 95.0 0.038 1.3E-06 60.1 7.6 26 720-745 4-29 (260)
322 1zp6_A Hypothetical protein AT 94.9 0.012 4E-07 60.3 3.2 28 717-744 6-33 (191)
323 1zp6_A Hypothetical protein AT 94.9 0.014 4.9E-07 59.6 3.9 35 1110-1146 12-46 (191)
324 3crm_A TRNA delta(2)-isopenten 94.9 0.049 1.7E-06 61.7 8.6 34 721-759 6-39 (323)
325 1ex7_A Guanylate kinase; subst 94.9 0.018 6.1E-07 60.2 4.6 25 1106-1131 1-25 (186)
326 3rlf_A Maltose/maltodextrin im 94.9 0.026 9E-07 65.3 6.4 28 717-744 26-53 (381)
327 4g1u_C Hemin import ATP-bindin 94.9 0.032 1.1E-06 61.4 6.7 28 717-744 34-61 (266)
328 2bbw_A Adenylate kinase 4, AK4 94.9 0.02 6.7E-07 61.6 5.0 35 1109-1147 29-63 (246)
329 3umf_A Adenylate kinase; rossm 94.9 0.017 5.7E-07 61.9 4.3 29 717-745 26-54 (217)
330 1zak_A Adenylate kinase; ATP:A 94.8 0.013 4.4E-07 61.9 3.3 27 719-745 4-30 (222)
331 2vli_A Antibiotic resistance p 94.8 0.011 3.8E-07 59.9 2.8 30 1109-1141 7-36 (183)
332 1knq_A Gluconate kinase; ALFA/ 94.8 0.021 7.3E-07 57.6 4.8 25 721-745 9-33 (175)
333 1zu4_A FTSY; GTPase, signal re 94.8 0.081 2.8E-06 59.8 10.0 40 718-757 103-142 (320)
334 1ak2_A Adenylate kinase isoenz 94.8 0.02 6.7E-07 61.2 4.7 26 720-745 16-41 (233)
335 3d3q_A TRNA delta(2)-isopenten 94.8 0.018 6E-07 65.8 4.5 31 1110-1142 10-40 (340)
336 2kwj_A Zinc finger protein DPF 94.8 0.013 4.5E-07 56.5 2.9 100 446-600 2-109 (114)
337 1gvn_B Zeta; postsegregational 94.8 0.014 4.9E-07 64.8 3.7 34 1110-1145 36-69 (287)
338 2pt5_A Shikimate kinase, SK; a 94.8 0.017 5.7E-07 57.8 3.8 24 722-745 2-25 (168)
339 3cm0_A Adenylate kinase; ATP-b 94.8 0.02 6.7E-07 58.3 4.3 25 721-745 5-29 (186)
340 3dl0_A Adenylate kinase; phosp 94.7 0.015 5.2E-07 60.9 3.5 24 722-745 2-25 (216)
341 3tlx_A Adenylate kinase 2; str 94.7 0.018 6.3E-07 62.1 4.3 27 719-745 28-54 (243)
342 3fb4_A Adenylate kinase; psych 94.7 0.016 5.6E-07 60.6 3.8 24 722-745 2-25 (216)
343 2yhs_A FTSY, cell division pro 94.7 0.079 2.7E-06 63.3 9.9 37 717-753 290-326 (503)
344 3be4_A Adenylate kinase; malar 94.7 0.017 5.7E-07 61.0 3.8 31 721-756 6-36 (217)
345 3e70_C DPA, signal recognition 94.7 0.11 3.7E-06 59.0 10.7 40 718-757 127-166 (328)
346 1qde_A EIF4A, translation init 94.7 0.074 2.5E-06 55.7 8.7 24 721-744 52-76 (224)
347 1ukz_A Uridylate kinase; trans 94.6 0.02 6.8E-07 59.3 4.1 26 720-745 15-40 (203)
348 3b6e_A Interferon-induced heli 94.6 0.12 4.1E-06 53.3 10.0 24 721-744 49-72 (216)
349 4eun_A Thermoresistant glucoki 94.6 0.022 7.7E-07 59.1 4.4 32 1110-1145 32-63 (200)
350 3thx_B DNA mismatch repair pro 94.6 0.069 2.4E-06 68.4 9.6 27 717-743 670-696 (918)
351 2yvu_A Probable adenylyl-sulfa 94.6 0.03 1E-06 57.2 5.3 36 719-754 12-47 (186)
352 4eun_A Thermoresistant glucoki 94.5 0.028 9.5E-07 58.4 5.0 27 719-745 28-54 (200)
353 2vli_A Antibiotic resistance p 94.5 0.014 5E-07 59.0 2.7 26 720-745 5-30 (183)
354 3fvq_A Fe(3+) IONS import ATP- 94.5 0.075 2.6E-06 61.1 8.8 28 717-744 27-54 (359)
355 2qt1_A Nicotinamide riboside k 94.5 0.027 9.3E-07 58.6 4.7 34 1107-1141 21-54 (207)
356 1uf9_A TT1252 protein; P-loop, 94.5 0.029 9.8E-07 57.7 4.9 30 1109-1141 10-39 (203)
357 2ze6_A Isopentenyl transferase 94.5 0.018 6E-07 62.7 3.4 23 1110-1132 4-26 (253)
358 3sr0_A Adenylate kinase; phosp 94.5 0.025 8.6E-07 59.9 4.5 24 722-745 2-25 (206)
359 3foz_A TRNA delta(2)-isopenten 94.5 0.027 9.1E-07 63.5 4.8 37 720-761 10-46 (316)
360 2pbr_A DTMP kinase, thymidylat 94.5 0.026 8.8E-07 57.5 4.4 32 1110-1142 3-36 (195)
361 1tf7_A KAIC; homohexamer, hexa 94.5 0.09 3.1E-06 63.2 9.8 29 716-744 35-65 (525)
362 1nn5_A Similar to deoxythymidy 94.4 0.032 1.1E-06 57.9 5.1 30 720-749 9-38 (215)
363 2ffh_A Protein (FFH); SRP54, s 94.4 0.37 1.3E-05 56.5 14.5 78 719-796 97-192 (425)
364 2xxa_A Signal recognition part 94.4 0.26 8.9E-06 58.0 13.3 77 719-795 99-194 (433)
365 2xau_A PRE-mRNA-splicing facto 94.4 0.056 1.9E-06 68.2 8.1 58 684-743 73-132 (773)
366 3b9q_A Chloroplast SRP recepto 94.4 0.41 1.4E-05 53.5 14.2 38 717-754 97-134 (302)
367 1p9r_A General secretion pathw 94.3 0.099 3.4E-06 61.3 9.5 74 721-794 168-246 (418)
368 3ake_A Cytidylate kinase; CMP 94.3 0.02 6.9E-07 59.1 3.3 31 1109-1141 4-34 (208)
369 1z47_A CYSA, putative ABC-tran 94.3 0.041 1.4E-06 63.2 6.1 27 718-744 39-65 (355)
370 1ltq_A Polynucleotide kinase; 94.3 0.02 7E-07 63.1 3.5 32 1110-1142 5-36 (301)
371 1tf7_A KAIC; homohexamer, hexa 94.3 0.079 2.7E-06 63.7 8.8 82 716-797 277-384 (525)
372 1j8m_F SRP54, signal recogniti 94.3 0.12 4.1E-06 57.8 9.7 77 720-796 98-192 (297)
373 2wwf_A Thymidilate kinase, put 94.3 0.033 1.1E-06 57.7 4.9 32 720-751 10-41 (212)
374 1cke_A CK, MSSA, protein (cyti 94.3 0.024 8.2E-07 59.6 3.8 35 1109-1147 7-41 (227)
375 2plr_A DTMP kinase, probable t 94.3 0.024 8.3E-07 58.5 3.7 26 721-746 5-30 (213)
376 2yyz_A Sugar ABC transporter, 94.2 0.045 1.5E-06 62.9 6.3 28 717-744 26-53 (359)
377 3dl0_A Adenylate kinase; phosp 94.2 0.024 8.2E-07 59.4 3.6 22 1110-1131 3-24 (216)
378 2v54_A DTMP kinase, thymidylat 94.2 0.026 8.8E-07 58.2 3.8 32 1110-1142 7-38 (204)
379 3lw7_A Adenylate kinase relate 94.2 0.024 8.1E-07 56.2 3.3 21 1110-1131 4-24 (179)
380 3gfo_A Cobalt import ATP-bindi 94.2 0.079 2.7E-06 58.6 7.7 28 717-744 31-58 (275)
381 2ga8_A Hypothetical 39.9 kDa p 94.1 0.055 1.9E-06 62.1 6.6 48 689-745 2-49 (359)
382 1vpl_A ABC transporter, ATP-bi 94.1 0.069 2.4E-06 58.4 7.2 28 717-744 38-65 (256)
383 2og2_A Putative signal recogni 94.1 0.41 1.4E-05 55.0 13.8 38 717-754 154-191 (359)
384 2pez_A Bifunctional 3'-phospho 94.1 0.064 2.2E-06 54.4 6.5 35 1110-1145 8-44 (179)
385 3eph_A TRNA isopentenyltransfe 94.1 0.028 9.7E-07 65.4 4.2 31 1110-1142 5-35 (409)
386 3uie_A Adenylyl-sulfate kinase 94.1 0.028 9.6E-07 58.4 3.8 28 718-745 23-50 (200)
387 2qor_A Guanylate kinase; phosp 94.1 0.03 1E-06 58.4 4.0 28 718-745 10-37 (204)
388 1e4v_A Adenylate kinase; trans 94.1 0.027 9.2E-07 59.1 3.6 24 722-745 2-25 (214)
389 2it1_A 362AA long hypothetical 94.0 0.061 2.1E-06 61.9 6.8 28 717-744 26-53 (362)
390 3r20_A Cytidylate kinase; stru 94.0 0.028 9.7E-07 60.8 3.8 33 1109-1145 11-43 (233)
391 3fb4_A Adenylate kinase; psych 94.0 0.027 9.3E-07 58.9 3.5 22 1110-1131 3-24 (216)
392 1cke_A CK, MSSA, protein (cyti 94.0 0.044 1.5E-06 57.6 5.1 25 721-745 6-30 (227)
393 2yvu_A Probable adenylyl-sulfa 94.0 0.044 1.5E-06 56.0 4.9 38 1109-1146 15-53 (186)
394 1w4r_A Thymidine kinase; type 94.0 0.083 2.8E-06 55.6 7.1 33 721-754 21-54 (195)
395 3tui_C Methionine import ATP-b 94.0 0.057 2E-06 62.2 6.3 28 717-744 51-78 (366)
396 4gne_A Histone-lysine N-methyl 93.9 0.12 4E-06 49.4 7.4 95 436-596 6-102 (107)
397 3k1j_A LON protease, ATP-depen 93.9 0.025 8.7E-07 69.2 3.6 22 1110-1131 63-84 (604)
398 3llm_A ATP-dependent RNA helic 93.9 0.16 5.6E-06 54.0 9.4 22 721-742 77-98 (235)
399 2pbr_A DTMP kinase, thymidylat 93.9 0.039 1.3E-06 56.1 4.3 24 722-745 2-25 (195)
400 2bbw_A Adenylate kinase 4, AK4 93.9 0.032 1.1E-06 59.9 3.9 26 720-745 27-52 (246)
401 3ney_A 55 kDa erythrocyte memb 93.9 0.06 2.1E-06 56.8 5.8 22 1110-1131 22-43 (197)
402 2grj_A Dephospho-COA kinase; T 93.9 0.058 2E-06 56.4 5.7 36 1110-1149 15-50 (192)
403 1g29_1 MALK, maltose transport 93.8 0.05 1.7E-06 62.8 5.5 27 718-744 27-53 (372)
404 2jaq_A Deoxyguanosine kinase; 93.8 0.032 1.1E-06 57.3 3.5 24 722-745 2-25 (205)
405 2h92_A Cytidylate kinase; ross 93.8 0.036 1.2E-06 58.1 3.9 31 1110-1142 6-36 (219)
406 2plr_A DTMP kinase, probable t 93.8 0.031 1.1E-06 57.7 3.4 32 1109-1141 6-38 (213)
407 2j41_A Guanylate kinase; GMP, 93.7 0.033 1.1E-06 57.4 3.5 27 718-744 4-30 (207)
408 2xb4_A Adenylate kinase; ATP-b 93.7 0.045 1.5E-06 58.1 4.6 24 722-745 2-25 (223)
409 2bdt_A BH3686; alpha-beta prot 93.7 0.04 1.4E-06 56.4 4.0 29 1110-1139 5-33 (189)
410 1w5s_A Origin recognition comp 93.7 0.044 1.5E-06 62.6 4.8 35 1109-1143 52-95 (412)
411 2wwf_A Thymidilate kinase, put 93.7 0.021 7.2E-07 59.2 1.9 23 1109-1131 12-34 (212)
412 2j9r_A Thymidine kinase; TK1, 93.7 0.062 2.1E-06 57.4 5.5 33 722-754 30-62 (214)
413 3a8t_A Adenylate isopentenyltr 93.6 0.1 3.6E-06 59.4 7.6 25 721-745 41-65 (339)
414 3thx_A DNA mismatch repair pro 93.6 0.099 3.4E-06 67.1 8.3 24 719-742 661-684 (934)
415 2if2_A Dephospho-COA kinase; a 93.6 0.039 1.3E-06 57.1 3.8 29 722-756 3-31 (204)
416 1oxx_K GLCV, glucose, ABC tran 93.6 0.042 1.4E-06 63.0 4.4 28 717-744 28-55 (353)
417 2qor_A Guanylate kinase; phosp 93.6 0.036 1.2E-06 57.8 3.5 22 1110-1131 15-36 (204)
418 1kgd_A CASK, peripheral plasma 93.5 0.042 1.4E-06 56.2 3.8 26 720-745 5-30 (180)
419 3zvl_A Bifunctional polynucleo 93.5 0.15 5E-06 59.6 8.9 28 718-745 256-283 (416)
420 4e22_A Cytidylate kinase; P-lo 93.5 0.057 2E-06 58.5 5.0 35 1108-1146 28-62 (252)
421 2pez_A Bifunctional 3'-phospho 93.5 0.052 1.8E-06 55.1 4.4 26 720-745 5-30 (179)
422 4a74_A DNA repair and recombin 93.5 0.053 1.8E-06 56.7 4.6 22 1110-1131 28-49 (231)
423 3nwj_A ATSK2; P loop, shikimat 93.5 0.034 1.2E-06 60.7 3.1 26 720-745 48-73 (250)
424 3p32_A Probable GTPase RV1496/ 93.5 0.17 5.9E-06 57.6 9.2 38 720-757 79-116 (355)
425 2v3c_C SRP54, signal recogniti 93.5 0.065 2.2E-06 63.1 5.8 37 720-756 99-135 (432)
426 3nh6_A ATP-binding cassette SU 93.5 0.087 3E-06 59.2 6.6 29 716-744 76-104 (306)
427 3sr0_A Adenylate kinase; phosp 93.3 0.042 1.5E-06 58.1 3.5 22 1110-1131 3-24 (206)
428 2jaq_A Deoxyguanosine kinase; 93.3 0.042 1.4E-06 56.3 3.4 40 1110-1149 3-42 (205)
429 2w0m_A SSO2452; RECA, SSPF, un 93.3 0.053 1.8E-06 56.5 4.2 34 1110-1143 26-62 (235)
430 1vht_A Dephospho-COA kinase; s 93.3 0.046 1.6E-06 57.3 3.7 30 1109-1141 6-35 (218)
431 2z0h_A DTMP kinase, thymidylat 93.3 0.058 2E-06 55.1 4.4 23 723-745 3-25 (197)
432 3ake_A Cytidylate kinase; CMP 93.3 0.049 1.7E-06 56.2 3.8 30 722-756 4-33 (208)
433 1e4v_A Adenylate kinase; trans 93.3 0.041 1.4E-06 57.7 3.3 22 1110-1131 3-24 (214)
434 3r20_A Cytidylate kinase; stru 93.2 0.064 2.2E-06 58.0 4.8 26 720-745 9-34 (233)
435 1m7g_A Adenylylsulfate kinase; 93.2 0.058 2E-06 56.5 4.4 36 1110-1146 28-66 (211)
436 3tr0_A Guanylate kinase, GMP k 93.2 0.052 1.8E-06 55.9 3.9 26 719-744 6-31 (205)
437 1uf9_A TT1252 protein; P-loop, 93.1 0.048 1.6E-06 56.0 3.5 24 720-743 8-31 (203)
438 1svm_A Large T antigen; AAA+ f 93.1 0.049 1.7E-06 63.0 3.9 33 1109-1143 171-203 (377)
439 3tau_A Guanylate kinase, GMP k 93.1 0.047 1.6E-06 57.3 3.5 27 719-745 7-33 (208)
440 1uj2_A Uridine-cytidine kinase 93.1 0.043 1.5E-06 59.2 3.3 37 1109-1147 24-68 (252)
441 1hv8_A Putative ATP-dependent 93.1 0.13 4.6E-06 57.1 7.4 24 721-744 45-68 (367)
442 2v54_A DTMP kinase, thymidylat 93.1 0.051 1.8E-06 55.9 3.7 25 720-744 4-28 (204)
443 1vec_A ATP-dependent RNA helic 93.1 0.12 4.1E-06 53.2 6.5 18 721-738 41-58 (206)
444 2qt1_A Nicotinamide riboside k 93.1 0.056 1.9E-06 56.2 3.9 26 719-744 20-45 (207)
445 1q3t_A Cytidylate kinase; nucl 93.0 0.062 2.1E-06 57.4 4.3 34 1109-1146 18-51 (236)
446 1rz3_A Hypothetical protein rb 92.9 0.19 6.3E-06 52.3 7.7 28 719-746 21-48 (201)
447 2z0h_A DTMP kinase, thymidylat 92.9 0.069 2.4E-06 54.5 4.3 32 1110-1142 3-36 (197)
448 2f6r_A COA synthase, bifunctio 92.9 0.065 2.2E-06 59.2 4.3 30 1109-1141 77-106 (281)
449 3bor_A Human initiation factor 92.8 0.14 4.9E-06 54.4 6.8 18 721-738 68-85 (237)
450 1t6n_A Probable ATP-dependent 92.8 0.36 1.2E-05 50.2 9.8 24 721-744 52-75 (220)
451 3c8u_A Fructokinase; YP_612366 92.8 0.089 3.1E-06 55.0 5.1 41 718-758 20-60 (208)
452 2xb4_A Adenylate kinase; ATP-b 92.8 0.053 1.8E-06 57.5 3.4 22 1110-1131 3-24 (223)
453 1ex7_A Guanylate kinase; subst 92.8 0.061 2.1E-06 56.2 3.7 25 721-745 2-26 (186)
454 2bdt_A BH3686; alpha-beta prot 92.8 0.054 1.9E-06 55.4 3.3 23 722-744 4-26 (189)
455 1nn5_A Similar to deoxythymidy 92.8 0.059 2E-06 55.9 3.6 23 1109-1131 11-33 (215)
456 3zvl_A Bifunctional polynucleo 92.7 0.04 1.4E-06 64.4 2.5 30 1110-1141 261-290 (416)
457 2grj_A Dephospho-COA kinase; T 92.7 0.07 2.4E-06 55.8 4.1 30 722-756 14-43 (192)
458 1jjv_A Dephospho-COA kinase; P 92.7 0.052 1.8E-06 56.3 3.1 23 722-745 4-26 (206)
459 1m7g_A Adenylylsulfate kinase; 92.7 0.067 2.3E-06 56.0 3.9 28 718-745 23-50 (211)
460 1ye8_A Protein THEP1, hypothet 92.6 0.063 2.1E-06 55.4 3.5 22 1110-1131 3-24 (178)
461 1kgd_A CASK, peripheral plasma 92.6 0.063 2.1E-06 54.9 3.5 22 1110-1131 8-29 (180)
462 1lvg_A Guanylate kinase, GMP k 92.6 0.066 2.2E-06 55.8 3.7 27 719-745 3-29 (198)
463 2qm8_A GTPase/ATPase; G protei 92.6 0.31 1E-05 55.3 9.4 41 718-758 53-93 (337)
464 2pl3_A Probable ATP-dependent 92.6 0.16 5.6E-06 53.6 6.8 19 720-738 62-80 (236)
465 1rj9_A FTSY, signal recognitio 92.5 0.32 1.1E-05 54.5 9.4 36 719-754 101-136 (304)
466 1wb9_A DNA mismatch repair pro 92.4 0.51 1.8E-05 59.7 12.1 25 719-743 606-630 (800)
467 3a00_A Guanylate kinase, GMP k 92.4 0.068 2.3E-06 54.9 3.5 25 721-745 2-26 (186)
468 3iuy_A Probable ATP-dependent 92.4 0.28 9.7E-06 51.4 8.4 19 720-738 57-75 (228)
469 2krk_A 26S protease regulatory 92.4 0.026 8.9E-07 51.6 0.3 54 604-669 31-84 (86)
470 3vlf_B 26S protease regulatory 92.4 0.058 2E-06 49.4 2.6 56 603-670 20-75 (88)
471 2h92_A Cytidylate kinase; ross 92.4 0.088 3E-06 55.0 4.3 31 721-756 4-34 (219)
472 4e22_A Cytidylate kinase; P-lo 92.4 0.1 3.4E-06 56.6 4.9 26 720-745 27-52 (252)
473 1z6g_A Guanylate kinase; struc 92.4 0.074 2.5E-06 56.4 3.8 28 717-744 20-47 (218)
474 3tau_A Guanylate kinase, GMP k 92.3 0.063 2.2E-06 56.3 3.2 22 1110-1131 11-32 (208)
475 2lri_C Autoimmune regulator; Z 92.3 0.13 4.3E-06 44.9 4.5 48 443-495 10-57 (66)
476 1vht_A Dephospho-COA kinase; s 92.3 0.086 3E-06 55.2 4.2 31 720-756 4-34 (218)
477 3fdi_A Uncharacterized protein 92.3 0.072 2.5E-06 56.0 3.5 35 1108-1147 7-41 (201)
478 3c8u_A Fructokinase; YP_612366 92.3 0.082 2.8E-06 55.2 3.9 33 1110-1142 25-60 (208)
479 1ltq_A Polynucleotide kinase; 92.2 0.069 2.4E-06 58.8 3.4 24 721-744 3-26 (301)
480 2j41_A Guanylate kinase; GMP, 92.2 0.067 2.3E-06 55.1 3.1 22 1110-1131 9-30 (207)
481 1htw_A HI0065; nucleotide-bind 92.2 0.079 2.7E-06 53.7 3.5 29 716-744 29-57 (158)
482 2e6r_A Jumonji/ARID domain-con 92.2 0.13 4.3E-06 47.8 4.6 48 442-491 13-60 (92)
483 3ber_A Probable ATP-dependent 92.2 0.29 9.8E-06 52.7 8.2 18 721-738 81-98 (249)
484 3ney_A 55 kDa erythrocyte memb 92.1 0.087 3E-06 55.5 3.9 27 719-745 18-44 (197)
485 1q3t_A Cytidylate kinase; nucl 92.1 0.11 3.7E-06 55.5 4.7 28 718-745 14-41 (236)
486 3exa_A TRNA delta(2)-isopenten 92.1 0.11 3.9E-06 58.5 5.0 36 721-761 4-39 (322)
487 1sky_E F1-ATPase, F1-ATP synth 92.1 0.21 7.2E-06 59.2 7.5 27 720-746 151-177 (473)
488 3eiq_A Eukaryotic initiation f 92.0 0.25 8.6E-06 56.1 8.0 21 720-740 77-97 (414)
489 3d3q_A TRNA delta(2)-isopenten 92.0 0.11 3.6E-06 59.4 4.8 34 721-759 8-41 (340)
490 1uj2_A Uridine-cytidine kinase 92.0 0.082 2.8E-06 57.0 3.6 27 720-746 22-48 (252)
491 2o8b_B DNA mismatch repair pro 91.9 0.47 1.6E-05 61.6 11.1 23 720-742 789-811 (1022)
492 1n0w_A DNA repair protein RAD5 91.9 0.076 2.6E-06 56.0 3.2 21 1110-1130 27-47 (243)
493 3hdt_A Putative kinase; struct 91.9 0.12 4.1E-06 55.4 4.8 30 721-755 15-44 (223)
494 3hdt_A Putative kinase; struct 91.9 0.1 3.5E-06 55.9 4.1 48 1109-1158 16-63 (223)
495 1xwh_A Autoimmune regulator; P 91.9 0.17 5.9E-06 43.9 4.8 45 442-491 5-49 (66)
496 1s2m_A Putative ATP-dependent 91.9 0.37 1.3E-05 54.6 9.1 22 721-742 59-80 (400)
497 2cvh_A DNA repair and recombin 91.9 0.077 2.6E-06 55.1 3.1 32 1110-1141 23-54 (220)
498 1np6_A Molybdopterin-guanine d 91.8 0.17 5.8E-06 52.1 5.6 38 720-757 6-43 (174)
499 4b3f_X DNA-binding protein smu 91.8 0.2 6.8E-06 61.8 7.2 42 691-747 191-232 (646)
500 2fna_A Conserved hypothetical 91.8 0.11 3.7E-06 57.7 4.4 34 1109-1144 32-65 (357)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=7e-52 Score=516.03 Aligned_cols=371 Identities=33% Similarity=0.520 Sum_probs=301.9
Q ss_pred CCCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEec
Q 001066 678 SGKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARK 757 (1167)
Q Consensus 678 ~~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~ 757 (1167)
...+.++|++|+|++++++.|++++.+|+.+|+.|..+|+.++++||||||||||||+||++||.+++ .+|+.++
T Consensus 196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg-----~~~~~v~ 270 (806)
T 3cf2_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG-----AFFFLIN 270 (806)
T ss_dssp CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT-----CEEEEEE
T ss_pred ccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC-----CeEEEEE
Confidence 34556899999999999999999999999999999999999999999999999999999999999987 7899999
Q ss_pred ccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCC
Q 001066 758 GADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRP 837 (1167)
Q Consensus 758 ~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~ 837 (1167)
+.+++++|.|+.+..++.+|..|++++|+||||||||.|++++.........+++++|+.+|+++....+|+||+|||++
T Consensus 271 ~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~ 350 (806)
T 3cf2_A 271 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (806)
T ss_dssp HHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSST
T ss_pred hHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCCh
Confidence 99999999999999999999999999999999999999999887777777789999999999999888899999999999
Q ss_pred CcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCh
Q 001066 838 EAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPL 917 (1167)
Q Consensus 838 d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~ 917 (1167)
+.||++|+|+|||++.|+|+.|+..+|.+||+.++..+... .+.++..||..|.||+++||.+||++|++.|++|..+.
T Consensus 351 d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~ 429 (806)
T 3cf2_A 351 NSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDL 429 (806)
T ss_dssp TTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999876554 55789999999999999999999999999998875321
Q ss_pred HHHHHHHHHHhhccccccCCccccCHHHHHHHhhcCCCCCCcccccccccccccCCCCCCccccccchhhhhhhhhhhhc
Q 001066 918 QEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPCSKREAGIAAHDLVSSPLPSHLIPCLLQPLSTLLVSLYLDE 997 (1167)
Q Consensus 918 ~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~re~~~a~~d~~~a~L~~~iip~v~w~l~~l~~~~~l~E 997 (1167)
.+.. ...........+.++..||..|+..++|+. .++. ...+|.+.|....
T Consensus 430 i~~~------~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~-~r~~-------------~~~~p~v~w~dig--------- 480 (806)
T 3cf2_A 430 IDLE------DETIDAEVMNSLAVTMDDFRWALSQSNPSA-LRET-------------VVEVPQVTWEDIG--------- 480 (806)
T ss_dssp GGGT------CCCCSHHHHHHCEECTTHHHHHHSSSSCCC-CCCC-------------CCBCCCCCSTTCC---------
T ss_pred cccc------ccccchhhhccceeeHHHHHHHHHhCCCcc-cccc-------------cccCCCCCHHHhC---------
Confidence 0000 000000111246688899999999998855 3322 1235677787221
Q ss_pred cccCCcchhHHHHHHHHHHHhhhhhhhccccccccchhhhHHHHHHHHHHHHHHhhcccccCCcccCCCccccCCCCCcc
Q 001066 998 RLWLPPSLTKATKMIQSVIVSALDKKKLLSDHWWSHINDFLEEADIAKEIERRLQYAGIITGEASFSGLDAFAGDSNDDC 1077 (1167)
Q Consensus 998 ~l~L~~~~~~~~~~i~~~i~~~l~~~~~~~~~~tga~~d~~~~~~i~r~i~~~~~~~gl~~~~~~~~~~~~~~~~~~~f~ 1077 (1167)
++ +.++..+...+.. |
T Consensus 481 ---------gl-~~~k~~l~e~v~~---p--------------------------------------------------- 496 (806)
T 3cf2_A 481 ---------GL-EDVKRELQELVQY---P--------------------------------------------------- 496 (806)
T ss_dssp ---------SC-HHHHHHHTTTTTT---T---------------------------------------------------
T ss_pred ---------CH-HHHHHHHHHHHHh---h---------------------------------------------------
Confidence 11 1111111110000 0
Q ss_pred CCCCCccccccccchhhhhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHH
Q 001066 1078 ANSKPSIAHSYGINCSLLQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGL 1157 (1167)
Q Consensus 1078 ~~~kp~~~~~~~~~~~~~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nv 1157 (1167)
...|..|. +.+..+++ ++|||||||||||+||+|||+++ + ++||++++|+|++||+|+||++|
T Consensus 497 -~~~p~~f~----------~~g~~~~~----gvLl~GPPGtGKT~lAkaiA~e~-~-~~f~~v~~~~l~s~~vGese~~v 559 (806)
T 3cf2_A 497 -VEHPDKFL----------KFGMTPSK----GVLFYGPPGCGKTLLAKAIANEC-Q-ANFISIKGPELLTMWFGESEANV 559 (806)
T ss_dssp -TTCSGGGS----------SSCCCCCS----CCEEESSTTSSHHHHHHHHHHTT-T-CEEEECCHHHHHTTTCSSCHHHH
T ss_pred -hhCHHHHH----------hcCCCCCc----eEEEecCCCCCchHHHHHHHHHh-C-CceEEeccchhhccccchHHHHH
Confidence 00233332 22333333 39999999999999999999999 4 99999999999999999999999
Q ss_pred HHHhhhc
Q 001066 1158 TLLLSMF 1164 (1167)
Q Consensus 1158 r~iF~~~ 1164 (1167)
|+||...
T Consensus 560 r~lF~~A 566 (806)
T 3cf2_A 560 REIFDKA 566 (806)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999864
No 2
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2e-41 Score=422.20 Aligned_cols=359 Identities=27% Similarity=0.478 Sum_probs=253.9
Q ss_pred ccccccCcchhHHHHHHHHHHhhhHHHHHHhhHHHHHhhhhhhhhhhhccc--cCh---HHHHHhhHHHHHHHhhccCcc
Q 001066 596 HRHLFQPYGDQYLARIKKLKARKMKMEIRKLSNDAWRKDMEAEEKWLENCG--EDE---EFLKREGKRLHRDLLRIAPVY 670 (1167)
Q Consensus 596 Hr~~fqp~g~q~le~Lk~~tkk~sgAEI~~l~~~A~~~~i~r~~~~l~~~~--~d~---~~lk~~~~d~~~aL~~v~p~~ 670 (1167)
|........+.++..++..|.+|++++|..+|+.|+..++.+..+...... ... +.+.+...||..++..+.|+.
T Consensus 384 ~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 384 HTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp TCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCC
T ss_pred HhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcc
Confidence 333344456778999999999999999999999999999888665443221 111 234567889999999999987
Q ss_pred cCCCCCCCCCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCc
Q 001066 671 IGGSDSDSGKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKR 750 (1167)
Q Consensus 671 ~~~~~~~~~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~ 750 (1167)
.+.. ....+..+|++|+|++++++.|.+.+.+|+.+++.|.++++.++++||||||||||||++|++||.+++
T Consensus 464 ~r~~--~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~----- 536 (806)
T 3cf2_A 464 LRET--VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ----- 536 (806)
T ss_dssp CCCC--CCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT-----
T ss_pred cccc--cccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC-----
Confidence 6544 334566899999999999999999999999999999999999999999999999999999999999998
Q ss_pred eEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcc---cccchHHHHHHHHHHhhcccCCCc
Q 001066 751 IAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQ---QDQTHSSVVSTLLALMDGLKSRGS 827 (1167)
Q Consensus 751 i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~---~~~~~~~vl~~LL~lLd~l~~~~~ 827 (1167)
.+|+.++.++++++|+|+++..++.+|..|+...|+||||||||.|.+++... +.....+++++||..|+++....+
T Consensus 537 ~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~ 616 (806)
T 3cf2_A 537 ANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 616 (806)
T ss_dssp CEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSS
T ss_pred CceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCC
Confidence 79999999999999999999999999999999999999999999999876532 234556899999999999988889
Q ss_pred eEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHH
Q 001066 828 VVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAA 907 (1167)
Q Consensus 828 ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~ 907 (1167)
|+||||||+|+.||++|+|||||+..|+|++|+.++|.+||+.++++.+.. .+.++..||..|.||+++||.++|++|+
T Consensus 617 V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SGadi~~l~~~A~ 695 (806)
T 3cf2_A 617 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRAC 695 (806)
T ss_dssp EEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------CHHHHHHHHH
T ss_pred EEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999877654 4578999999999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHHHHh--hccccccCCccccCHHHHHHHhhcCCCCCCcccc
Q 001066 908 IIALKRNFPLQEILSAAAEKA--FCSKRVTLPSFAVEERDWLEALSCSPPPCSKREA 962 (1167)
Q Consensus 908 ~~A~~R~i~~~di~~~~e~~~--~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~re~ 962 (1167)
+.|+++.+............. ............|+..||..|++.++|+++..++
T Consensus 696 ~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~l 752 (806)
T 3cf2_A 696 KLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDI 752 (806)
T ss_dssp HHHHHHHHC-----------------------CCC----CCTTTC------------
T ss_pred HHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCCHHHH
Confidence 999987543111000000000 0000011122468999999999999998876654
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-40 Score=378.85 Aligned_cols=247 Identities=37% Similarity=0.636 Sum_probs=226.3
Q ss_pred CCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 001066 679 GKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG 758 (1167)
Q Consensus 679 ~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~ 758 (1167)
..|.++|+||+|++++++.|++++.+|+.+|+.|..+|++++++||||||||||||+||++||++++ .+|+.+++
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~-----~~f~~v~~ 215 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD-----CKFIRVSG 215 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT-----CEEEEEEG
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC-----CCceEEEh
Confidence 4567899999999999999999999999999999999999999999999999999999999999998 79999999
Q ss_pred cccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccc---cchHHHHHHHHHHhhcccCCCceEEEccCC
Q 001066 759 ADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQD---QTHSSVVSTLLALMDGLKSRGSVVVIGATN 835 (1167)
Q Consensus 759 ~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~---~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN 835 (1167)
++++++|+|+.+..++.+|..|+...|+||||||||.+++++..... ....+++..||+.|+++....+|+||||||
T Consensus 216 s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATN 295 (405)
T 4b4t_J 216 AELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATN 295 (405)
T ss_dssp GGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEES
T ss_pred HHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccC
Confidence 99999999999999999999999999999999999999987654432 334578889999999998889999999999
Q ss_pred CCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCC
Q 001066 836 RPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNF 915 (1167)
Q Consensus 836 ~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i 915 (1167)
+|+.||++|+|||||+..|+|+.|+.++|.+||+.++...+.. .+.++..||..|.||+++||.++|++|++.|++++
T Consensus 296 rpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~- 373 (405)
T 4b4t_J 296 RLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEKMNGCSGADVKGVCTEAGMYALRER- 373 (405)
T ss_dssp CSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT-
T ss_pred ChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC-
Confidence 9999999999999999999999999999999999999887654 45679999999999999999999999999998764
Q ss_pred ChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcCC
Q 001066 916 PLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSP 954 (1167)
Q Consensus 916 ~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~ 954 (1167)
...|+.+||..|+.++.
T Consensus 374 ----------------------~~~vt~~Df~~Al~~v~ 390 (405)
T 4b4t_J 374 ----------------------RIHVTQEDFELAVGKVM 390 (405)
T ss_dssp ----------------------CSBCCHHHHHHHHHHHH
T ss_pred ----------------------CCCcCHHHHHHHHHHHh
Confidence 23578899999988663
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-39 Score=374.58 Aligned_cols=248 Identities=36% Similarity=0.639 Sum_probs=226.6
Q ss_pred CCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 001066 679 GKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG 758 (1167)
Q Consensus 679 ~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~ 758 (1167)
..+.++|+||+|++++++.|++.+.+|+.+|+.|..+|++++++||||||||||||+||++||.+++ .+|+.+++
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~-----~~fi~v~~ 249 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS-----ATFLRIVG 249 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT-----CEEEEEES
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC-----CCEEEEEH
Confidence 4677899999999999999999999999999999999999999999999999999999999999998 79999999
Q ss_pred cccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCccc---ccchHHHHHHHHHHhhcccCCCceEEEccCC
Q 001066 759 ADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQ---DQTHSSVVSTLLALMDGLKSRGSVVVIGATN 835 (1167)
Q Consensus 759 ~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~---~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN 835 (1167)
++++++|+|+.+..++.+|..|+..+|+||||||||.++.++...+ +....+++..||+.|+++....+|+||||||
T Consensus 250 s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATN 329 (437)
T 4b4t_I 250 SELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATN 329 (437)
T ss_dssp GGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEES
T ss_pred HHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCC
Confidence 9999999999999999999999999999999999999998775443 2334577888999999998889999999999
Q ss_pred CCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCC
Q 001066 836 RPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNF 915 (1167)
Q Consensus 836 ~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i 915 (1167)
+++.||++|+|||||+..|+|+.|+.++|.+||+.++..+... .+.++..||..|.||+++||.++|++|++.|+++..
T Consensus 330 rpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~ 408 (437)
T 4b4t_I 330 KIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-EDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERR 408 (437)
T ss_dssp CSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC-SCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999887654 456799999999999999999999999999987642
Q ss_pred ChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcCCC
Q 001066 916 PLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPP 955 (1167)
Q Consensus 916 ~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P 955 (1167)
..|+.+||..|+.++.+
T Consensus 409 -----------------------~~It~eDf~~Al~rv~~ 425 (437)
T 4b4t_I 409 -----------------------MQVTAEDFKQAKERVMK 425 (437)
T ss_dssp -----------------------SCBCHHHHHHHHHHHHH
T ss_pred -----------------------CccCHHHHHHHHHHHhC
Confidence 35788999999887654
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-38 Score=374.53 Aligned_cols=250 Identities=33% Similarity=0.563 Sum_probs=228.2
Q ss_pred CCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 001066 679 GKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG 758 (1167)
Q Consensus 679 ~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~ 758 (1167)
..|.++|+||+|++++++.|.+.+.+|+.+|+.|..+|++++++||||||||||||++|++||.+++ .+|+.+++
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~-----~~f~~v~~ 248 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN-----ATFLKLAA 248 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT-----CEEEEEEG
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC-----CCEEEEeh
Confidence 4567899999999999999999999999999999999999999999999999999999999999998 79999999
Q ss_pred cccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCccccc---chHHHHHHHHHHhhcccCCCceEEEccCC
Q 001066 759 ADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQ---THSSVVSTLLALMDGLKSRGSVVVIGATN 835 (1167)
Q Consensus 759 ~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~---~~~~vl~~LL~lLd~l~~~~~ViVIaTTN 835 (1167)
++++++|+|..+..++.+|..|+...|+||||||||.|++++...... ...+++..||+.|+++....+|+||||||
T Consensus 249 s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTN 328 (434)
T 4b4t_M 249 PQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATN 328 (434)
T ss_dssp GGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECS
T ss_pred hhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCC
Confidence 999999999999999999999999999999999999998877544332 33467788999999998888999999999
Q ss_pred CCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCC
Q 001066 836 RPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNF 915 (1167)
Q Consensus 836 ~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i 915 (1167)
+|+.||++|+|||||+..|+|+.|+.++|.+||+.++..+... .+.++..||..|.||+++||.++|++|++.|++++.
T Consensus 329 rp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~ 407 (434)
T 4b4t_M 329 RVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQ 407 (434)
T ss_dssp SCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999887654 456799999999999999999999999999987642
Q ss_pred ChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcCCCCC
Q 001066 916 PLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPC 957 (1167)
Q Consensus 916 ~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~ 957 (1167)
..|+.+||..|+.+++|..
T Consensus 408 -----------------------~~i~~~Df~~Al~~v~~~~ 426 (434)
T 4b4t_M 408 -----------------------SSVKHEDFVEGISEVQARK 426 (434)
T ss_dssp -----------------------SSBCHHHHHHHHHSCSSSC
T ss_pred -----------------------CCcCHHHHHHHHHHHhCCC
Confidence 3588999999999998754
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-38 Score=372.10 Aligned_cols=248 Identities=34% Similarity=0.601 Sum_probs=226.5
Q ss_pred CCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 001066 679 GKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG 758 (1167)
Q Consensus 679 ~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~ 758 (1167)
..|.++|+||+|++++++.|.+.+.+|+.+|+.|..+|++++++||||||||||||+||++||++++ .+|+.+++
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~-----~~~~~v~~ 248 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG-----ANFIFSPA 248 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT-----CEEEEEEG
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEeh
Confidence 3567899999999999999999999999999999999999999999999999999999999999998 79999999
Q ss_pred cccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccc---cchHHHHHHHHHHhhcccCCCceEEEccCC
Q 001066 759 ADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQD---QTHSSVVSTLLALMDGLKSRGSVVVIGATN 835 (1167)
Q Consensus 759 ~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~---~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN 835 (1167)
++++++|+|..+..++.+|..|+...|+||||||||.++.++...+. .....++..||..|+++....+++||+|||
T Consensus 249 s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATN 328 (437)
T 4b4t_L 249 SGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATN 328 (437)
T ss_dssp GGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEES
T ss_pred hhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecC
Confidence 99999999999999999999999999999999999999987754433 334567889999999998888999999999
Q ss_pred CCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCC
Q 001066 836 RPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNF 915 (1167)
Q Consensus 836 ~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i 915 (1167)
+|+.||++|+|||||+..|+||.|+.++|.+||+.++..+... .+.++..||..|.||+++||.++|++|++.|++++.
T Consensus 329 rp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~ 407 (437)
T 4b4t_L 329 RPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDR 407 (437)
T ss_dssp STTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred CchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999887654 456799999999999999999999999999987642
Q ss_pred ChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcCCC
Q 001066 916 PLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPP 955 (1167)
Q Consensus 916 ~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P 955 (1167)
..|+..||..|+.++.|
T Consensus 408 -----------------------~~i~~~d~~~Al~~v~~ 424 (437)
T 4b4t_L 408 -----------------------DHINPDDLMKAVRKVAE 424 (437)
T ss_dssp -----------------------SSBCHHHHHHHHHHHHH
T ss_pred -----------------------CCCCHHHHHHHHHHHHh
Confidence 24788999999987654
No 7
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-38 Score=368.74 Aligned_cols=246 Identities=38% Similarity=0.647 Sum_probs=224.2
Q ss_pred CCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 001066 679 GKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG 758 (1167)
Q Consensus 679 ~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~ 758 (1167)
+.|.++|+||+|++++++.|++.|.+|+.+|+.|..+|+.++++||||||||||||+||++||.+++ .+|+.+++
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~-----~~fi~vs~ 276 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD-----ATFIRVIG 276 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT-----CEEEEEEG
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC-----CCeEEEEh
Confidence 4667899999999999999999999999999999999999999999999999999999999999998 79999999
Q ss_pred cccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCccccc---chHHHHHHHHHHhhcccCCCceEEEccCC
Q 001066 759 ADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQ---THSSVVSTLLALMDGLKSRGSVVVIGATN 835 (1167)
Q Consensus 759 ~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~---~~~~vl~~LL~lLd~l~~~~~ViVIaTTN 835 (1167)
..++++|+|+.+..++.+|..|+...|+||||||||.++.++...+.. ...+++..||..|+++....+|+||||||
T Consensus 277 s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATN 356 (467)
T 4b4t_H 277 SELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATN 356 (467)
T ss_dssp GGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECS
T ss_pred HHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCC
Confidence 999999999999999999999999999999999999999877554332 33467778889999988888999999999
Q ss_pred CCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCC
Q 001066 836 RPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNF 915 (1167)
Q Consensus 836 ~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i 915 (1167)
+++.||++|+|||||+..|+|+.|+.++|.+||+.++..+... .+.++..||..|.||+++||.+||++|++.|+++..
T Consensus 357 rpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~ 435 (467)
T 4b4t_H 357 RPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR 435 (467)
T ss_dssp CTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999887654 456799999999999999999999999999987642
Q ss_pred ChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcC
Q 001066 916 PLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCS 953 (1167)
Q Consensus 916 ~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~ 953 (1167)
..++..||..|+.++
T Consensus 436 -----------------------~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 436 -----------------------KVATEKDFLKAVDKV 450 (467)
T ss_dssp -----------------------SSBCHHHHHHHHHHH
T ss_pred -----------------------CccCHHHHHHHHHHH
Confidence 247888999988765
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-37 Score=364.56 Aligned_cols=245 Identities=35% Similarity=0.592 Sum_probs=224.6
Q ss_pred CCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 001066 679 GKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG 758 (1167)
Q Consensus 679 ~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~ 758 (1167)
..|.++|+||+|++++++.|.+.+.+|+.+|+.|..+|++++++||||||||||||++|++||++++ .+|+.+++
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~-----~~~~~v~~ 239 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK-----AAFIRVNG 239 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT-----CEEEEEEG
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 4567899999999999999999999999999999999999999999999999999999999999998 79999999
Q ss_pred cccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcc---cccchHHHHHHHHHHhhcccCCCceEEEccCC
Q 001066 759 ADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQ---QDQTHSSVVSTLLALMDGLKSRGSVVVIGATN 835 (1167)
Q Consensus 759 ~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~---~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN 835 (1167)
++++++|+|..+..++.+|..|+...|+||||||||.++.++... ++....+++..||+.|+++....+++||||||
T Consensus 240 ~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN 319 (428)
T 4b4t_K 240 SEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATN 319 (428)
T ss_dssp GGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEES
T ss_pred chhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecC
Confidence 999999999999999999999999999999999999998876433 23345688999999999998889999999999
Q ss_pred CCCcCCcccCCCCCcccccccC-CCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC
Q 001066 836 RPEAVDPALRRPGRFDREIYFP-LPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRN 914 (1167)
Q Consensus 836 ~~d~Ld~aLlrpgRF~~~I~~~-~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~ 914 (1167)
+++.||++|+|||||+..|+|| +|+.++|..||+.++...... .+.++..||..|.||+++||.++|++|++.|++++
T Consensus 320 ~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~ 398 (428)
T 4b4t_K 320 RADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN 398 (428)
T ss_dssp CSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999997 899999999999999887653 45679999999999999999999999999998764
Q ss_pred CChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhc
Q 001066 915 FPLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSC 952 (1167)
Q Consensus 915 i~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~ 952 (1167)
. ..|+..||..|+.+
T Consensus 399 ~-----------------------~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 399 R-----------------------YVILQSDLEEAYAT 413 (428)
T ss_dssp C-----------------------SSBCHHHHHHHHHH
T ss_pred C-----------------------CCCCHHHHHHHHHH
Confidence 2 25788999999875
No 9
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=6.2e-36 Score=377.30 Aligned_cols=369 Identities=33% Similarity=0.519 Sum_probs=286.8
Q ss_pred CcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 001066 680 KLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA 759 (1167)
Q Consensus 680 ~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~ 759 (1167)
....+|++|+|++.+++.|.+++.+|+.++++|..+++.++.+|||+||||||||+||++||..++ ..++.+++.
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~-----~~~i~v~~~ 272 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG-----AFFFLINGP 272 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT-----CEEEEEEHH
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC-----CcEEEEEch
Confidence 345789999999999999999999999999999999999999999999999999999999999876 578899999
Q ss_pred ccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCc
Q 001066 760 DCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEA 839 (1167)
Q Consensus 760 ~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~ 839 (1167)
++.+.+.+..+..++.+|..+....|+|||||||+.+...+.........+++..|+.+|++......+++|+|||.++.
T Consensus 273 ~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ 352 (806)
T 1ypw_A 273 EIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp HHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTT
T ss_pred HhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchh
Confidence 99999999999999999999999899999999999999876655556667889999999999888888999999999999
Q ss_pred CCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCChHH
Q 001066 840 VDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQE 919 (1167)
Q Consensus 840 Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~~d 919 (1167)
+++++++++||+..+.++.|+.++|.+||+.++..+... .+..+..++..+.||+++++..++..|...+.++......
T Consensus 353 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~ 431 (806)
T 1ypw_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLID 431 (806)
T ss_dssp SCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTS
T ss_pred cCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccc
Confidence 999999999999999999999999999999998876553 4456888999999999999999999999988877543211
Q ss_pred HHHHHHHHhhccccccCCccccCHHHHHHHhhcCCCCCCcccccccccccccCCCCCCccccccchhhhhhhhhhhhccc
Q 001066 920 ILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPCSKREAGIAAHDLVSSPLPSHLIPCLLQPLSTLLVSLYLDERL 999 (1167)
Q Consensus 920 i~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~re~~~a~~d~~~a~L~~~iip~v~w~l~~l~~~~~l~E~l 999 (1167)
+... ... ........++..||..++....|+. .++. ....|.+.|....
T Consensus 432 ~~~~---~~~---~~~~~~~~v~~~d~~~al~~~~~s~-~~~~-------------~~~~~~v~~~di~----------- 480 (806)
T 1ypw_A 432 LEDE---TID---AEVMNSLAVTMDDFRWALSQSNPSA-LRET-------------VVEVPQVTWEDIG----------- 480 (806)
T ss_dssp CHHH---HCC---HHHHTTCCCCTTHHHHHHHHSCCCC-CCCC-------------CCCCCCCSSCSSS-----------
T ss_pred hhhh---ccc---hhhhhhhhhhhhhhhccccccCchh-hhhh-------------cccCccccccccc-----------
Confidence 1100 000 0111245677889999998876643 1111 1223455555110
Q ss_pred cCCcchhHHHHHHHHHHHhhhhhhhccccccccchhhhHHHHHHHHHHHHHHhhcccccCCcccCCCccccCCCCCccCC
Q 001066 1000 WLPPSLTKATKMIQSVIVSALDKKKLLSDHWWSHINDFLEEADIAKEIERRLQYAGIITGEASFSGLDAFAGDSNDDCAN 1079 (1167)
Q Consensus 1000 ~L~~~~~~~~~~i~~~i~~~l~~~~~~~~~~tga~~d~~~~~~i~r~i~~~~~~~gl~~~~~~~~~~~~~~~~~~~f~~~ 1079 (1167)
.... ++..+...+.. .+
T Consensus 481 -gl~~-------vk~~l~~~v~~--------------------------------~~----------------------- 497 (806)
T 1ypw_A 481 -GLED-------VKRELQELVQY--------------------------------PV----------------------- 497 (806)
T ss_dssp -CCCC-------HHHHHHTTTTS--------------------------------SS-----------------------
T ss_pred -cchh-------hhhhHHHHHHh--------------------------------hh-----------------------
Confidence 0000 11111000000 00
Q ss_pred CCCccccccccchhhhhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHH
Q 001066 1080 SKPSIAHSYGINCSLLQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTL 1159 (1167)
Q Consensus 1080 ~kp~~~~~~~~~~~~~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~ 1159 (1167)
.+|..+. +.+..+ ..++|||||||||||+||++||+.+ + .+|++|++++|+++|+|++|+++++
T Consensus 498 ~~~~~~~----------~~~~~~----~~~vLL~GppGtGKT~Lakala~~~-~-~~~i~v~~~~l~~~~~g~~~~~i~~ 561 (806)
T 1ypw_A 498 EHPDKFL----------KFGMTP----SKGVLFYGPPGCGKTLLAKAIANEC-Q-ANFISIKGPELLTMWFGESEANVRE 561 (806)
T ss_dssp SSCTTTT----------CCCCCC----CCCCCCBCCTTSSHHHHHHHHHHHH-T-CCCCCCCCSSSTTCCTTTSSHHHHH
T ss_pred hchHHHH----------hcCCCC----CceeEEECCCCCCHHHHHHHHHHHh-C-CCEEEEechHhhhhhcCccHHHHHH
Confidence 0111111 111111 1238999999999999999999999 3 9999999999999999999999999
Q ss_pred Hhhhc
Q 001066 1160 LLSMF 1164 (1167)
Q Consensus 1160 iF~~~ 1164 (1167)
+|+..
T Consensus 562 ~f~~a 566 (806)
T 1ypw_A 562 IFDKA 566 (806)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99863
No 10
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=4.3e-34 Score=339.84 Aligned_cols=356 Identities=31% Similarity=0.468 Sum_probs=263.5
Q ss_pred cccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccc
Q 001066 681 LFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGAD 760 (1167)
Q Consensus 681 ~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ 760 (1167)
+..+|++|+|++++++.+.+++.. +..+..|..+++..+.++||+||||||||+||++||.+++ .+|+.+++.+
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~-----~~f~~is~~~ 84 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN-----VPFFHISGSD 84 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT-----CCEEEEEGGG
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC-----CCeeeCCHHH
Confidence 456899999999999999998876 6778889999999999999999999999999999999986 6888999999
Q ss_pred cchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCc---ccccchHHHHHHHHHHhhcccCCCceEEEccCCCC
Q 001066 761 CLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTR---QQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRP 837 (1167)
Q Consensus 761 lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~---~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~ 837 (1167)
+...+.+.....++.+|..+....|+||||||||.|..++.. ..+.....++..|+..|+++....+++||++||.+
T Consensus 85 ~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 85 FVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp TTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 999999998999999999999999999999999999875542 22333456788999999987767789999999999
Q ss_pred CcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC---
Q 001066 838 EAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRN--- 914 (1167)
Q Consensus 838 d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~--- 914 (1167)
+.++++++|++||+..|.|+.|+.++|.+||+.++...+.. .+.++..|+..+.||+++||.++|++|+..|.+++
T Consensus 165 ~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~-~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~ 243 (476)
T 2ce7_A 165 DILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA-EDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDK 243 (476)
T ss_dssp GGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred hhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc-chhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCe
Confidence 99999999999999999999999999999999998876543 44568889999999999999999999999988654
Q ss_pred CChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcCCCCCCcccccccccccccC-CCCCCccccccchhhhhhhhh
Q 001066 915 FPLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPCSKREAGIAAHDLVSS-PLPSHLIPCLLQPLSTLLVSL 993 (1167)
Q Consensus 915 i~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~re~~~a~~d~~~a-~L~~~iip~v~w~l~~l~~~~ 993 (1167)
+...++..+........ ......++..+... .+++++++++..+.-. .-+-..+..+......++.++
T Consensus 244 I~~~dl~~al~~v~~~~---~~~~~~~~~~e~~~--------~a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~alg~~~ 312 (476)
T 2ce7_A 244 ITMKDFEEAIDRVIAGP---ARKSLLISPAEKRI--------IAYHEAGHAVVSTVVPNGEPVHRISIIPRGYKALGYTL 312 (476)
T ss_dssp BCHHHHHHHHHHHC-----------CCCHHHHHH--------HHHHHHHHHHHHHHSTTCCCCCEEECC-----------
T ss_pred ecHHHHHHHHHHHhcCc---cccchhhhcchhhh--------hHHHHhhhHHHhhccCCccccceeeeecCcccccceEE
Confidence 33444433322211100 00111222221110 1234445544333211 111233333333434678899
Q ss_pred hhhccccCCcchhHHHHHHHHHHHhhhhhhhccccccccchhhhHHHHHHHHHHHHHHhhcccc
Q 001066 994 YLDERLWLPPSLTKATKMIQSVIVSALDKKKLLSDHWWSHINDFLEEADIAKEIERRLQYAGII 1057 (1167)
Q Consensus 994 ~l~E~l~L~~~~~~~~~~i~~~i~~~l~~~~~~~~~~tga~~d~~~~~~i~r~i~~~~~~~gl~ 1057 (1167)
++|++.....+...+.+.|...++|+++...++++.+|||.+|+.+++.|++.| +..+||.
T Consensus 313 ~~p~~~~~~~~~~~l~~~i~~~l~Gr~ae~~~~g~~~~ga~~Dl~~at~~a~~m---v~~~gm~ 373 (476)
T 2ce7_A 313 HLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEIARNM---VCQLGMS 373 (476)
T ss_dssp ------CCSCBHHHHHHHHHHHTHHHHHHHHHHSSCCGGGHHHHHHHHHHHHHH---HHTSCCC
T ss_pred EcCcccccccCHHHHHHHHHHHHhHHHHHhhhcCCCCcccHHHHHHHHHHHHHH---HHHhCCC
Confidence 999877777888899999999999999999999999999999999999999998 4455544
No 11
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.98 E-value=1.6e-31 Score=303.68 Aligned_cols=285 Identities=29% Similarity=0.510 Sum_probs=232.8
Q ss_pred CcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 001066 680 KLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA 759 (1167)
Q Consensus 680 ~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~ 759 (1167)
.+..+|++|+|++.+++.|.+.+.+|+.+++.|.. +..+++++||+||||||||+||+++|..+. ..+|+.+++.
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~----~~~~~~i~~~ 80 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSISSS 80 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTT----SCEEEEEECC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcC----CCcEEEEEhH
Confidence 34578999999999999999999999999999885 356779999999999999999999999983 2588999999
Q ss_pred ccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc-CCCceEEEccCCCCC
Q 001066 760 DCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK-SRGSVVVIGATNRPE 838 (1167)
Q Consensus 760 ~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~-~~~~ViVIaTTN~~d 838 (1167)
+++..|.+..+..++.+|..++...|+||||||||.+.+++.........+++..|+..|+++. ...+++||+|||.++
T Consensus 81 ~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 81 DLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp SSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred HHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 9999999999999999999999999999999999999887666555666788999999999875 357899999999999
Q ss_pred cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCChH
Q 001066 839 AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQ 918 (1167)
Q Consensus 839 ~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~~ 918 (1167)
.++++++| ||+..|+|+.|+.++|.+||+.++...+..+++.++..|+..+.||+++||..||++|+..|+++.....
T Consensus 161 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~ 238 (322)
T 1xwi_A 161 VLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSAT 238 (322)
T ss_dssp TSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCS
T ss_pred cCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999 9999999999999999999999998887777889999999999999999999999999999987631100
Q ss_pred HHHHHHHH---------------------H-----hhccccccCCccccCHHHHHHHhhcCCCCCCcccc--cccccccc
Q 001066 919 EILSAAAE---------------------K-----AFCSKRVTLPSFAVEERDWLEALSCSPPPCSKREA--GIAAHDLV 970 (1167)
Q Consensus 919 di~~~~e~---------------------~-----~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~re~--~~a~~d~~ 970 (1167)
........ . +.......+....|+..||..|++.++|+++..+. ...|...|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~ 318 (322)
T 1xwi_A 239 HFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDF 318 (322)
T ss_dssp EEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTT
T ss_pred hhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 00000000 0 00000001122479999999999999998876544 34454444
Q ss_pred c
Q 001066 971 S 971 (1167)
Q Consensus 971 ~ 971 (1167)
+
T Consensus 319 ~ 319 (322)
T 1xwi_A 319 G 319 (322)
T ss_dssp C
T ss_pred c
Confidence 4
No 12
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.97 E-value=5.9e-31 Score=314.56 Aligned_cols=350 Identities=30% Similarity=0.474 Sum_probs=262.2
Q ss_pred cccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccc
Q 001066 681 LFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGAD 760 (1167)
Q Consensus 681 ~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ 760 (1167)
+..+|++|+|+++++..+.+++.. +..+..|..+++..+.++||+||||||||+||++||..+. .+|+.+++.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~ 99 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSD 99 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGG
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhH
Confidence 457899999999999999998866 6678888999999999999999999999999999999876 6788899999
Q ss_pred cchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcc---cccchHHHHHHHHHHhhcccCCCceEEEccCCCC
Q 001066 761 CLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQ---QDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRP 837 (1167)
Q Consensus 761 lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~---~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~ 837 (1167)
+...+.+.....++.+|+.+....|+||||||||.+...+... ........++.|+..|++......+++|++||.|
T Consensus 100 ~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p 179 (499)
T 2dhr_A 100 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRP 179 (499)
T ss_dssp GTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCG
T ss_pred HHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCCh
Confidence 8888888888889999999887789999999999997654321 1223346778888889988777789999999999
Q ss_pred CcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC---
Q 001066 838 EAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRN--- 914 (1167)
Q Consensus 838 d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~--- 914 (1167)
+.||++++|++||+..|.|+.|+.++|.+||+.++...... .+.++..||..+.||+++||.+++++|+..|.+++
T Consensus 180 ~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~-~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~ 258 (499)
T 2dhr_A 180 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRK 258 (499)
T ss_dssp GGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCC-CSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSS
T ss_pred hhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999988765432 35668899999999999999999999999887653
Q ss_pred CChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcCCCCCCccccccccccccc---CCCCCCccccccchhhhhhh
Q 001066 915 FPLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPCSKREAGIAAHDLVS---SPLPSHLIPCLLQPLSTLLV 991 (1167)
Q Consensus 915 i~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~re~~~a~~d~~~---a~L~~~iip~v~w~l~~l~~ 991 (1167)
+...++..+......... . ....++..+.. ..+++++++++..++- .++ .++..+.+. ..+++
T Consensus 259 It~~dl~~al~~v~~~~~-~--~~~~~~~~e~~--------~~a~~e~g~av~~~~l~~~~~v--~~~~i~pr~-~~~g~ 324 (499)
T 2dhr_A 259 ITMKDLEEAADRVMMLPA-K--KSLVLSPRDRR--------ITAYHEAGHALAAHFLEHADGV--HKVTIVPRG-RALGF 324 (499)
T ss_dssp CCSHHHHHHHHHHTTCSS-S--SCCCCCTTHHH--------HHHHHHHHHHHHHCCSSSCCCC--CCEESCCSS-CTTCS
T ss_pred cCHHHHHHHHHHHhcccc-c--ccchhhHHHHh--------hhHHHHHHHHHHHhhcCCCCee--eEEEeecCC-CcCcc
Confidence 444444433322211100 0 00111111100 0113344554444432 122 222222222 22334
Q ss_pred hhhhhc--cccCCcchhHHHHHHHHHHHhhhhhhhccccccccchhhhHHHHHHHHHHHHHHhhcccc
Q 001066 992 SLYLDE--RLWLPPSLTKATKMIQSVIVSALDKKKLLSDHWWSHINDFLEEADIAKEIERRLQYAGII 1057 (1167)
Q Consensus 992 ~~~l~E--~l~L~~~~~~~~~~i~~~i~~~l~~~~~~~~~~tga~~d~~~~~~i~r~i~~~~~~~gl~ 1057 (1167)
++ |+ +.++ .+...++..|...++|+..+..++++.+|||.+|+.+++.|++.| +..+||.
T Consensus 325 ~~--p~q~~~~~-~t~~~l~~~i~~~lgGr~ae~~~~g~~~~ga~~Dl~~at~~a~~m---v~~~gm~ 386 (499)
T 2dhr_A 325 MM--PRREDMLH-WSRKRLLDQIAVALAGRAAEEIVFDDVTTGAENDFRQATELARRM---ITEWGMH 386 (499)
T ss_dssp SH--HHHTTCCC-CCHHHHHHHHHHHHHHHHHHHHHSCSCCBCCCHHHHHHHHHHHHH---HTTSCCC
T ss_pred cc--cchhhhhc-cCHHHHHHHHHHHhhhHhHHHhhhcccCcccHHHHHHHHHHHHHH---HHHhCCC
Confidence 43 44 3333 356677889999999999999999999999999999999999998 4555654
No 13
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.97 E-value=3.7e-31 Score=300.09 Aligned_cols=276 Identities=29% Similarity=0.544 Sum_probs=227.1
Q ss_pred CCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 001066 679 GKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG 758 (1167)
Q Consensus 679 ~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~ 758 (1167)
..+..+|++|+|++.+++.|.+++.+|+.+++.|.. +..++.++||+||||||||++|++||..++ .+|+.+++
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~-----~~~~~v~~ 84 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEAN-----STFFSVSS 84 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHT-----CEEEEEEH
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHC-----CCEEEEch
Confidence 345678999999999999999999999999999887 446778999999999999999999999987 68999999
Q ss_pred cccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc-CCCceEEEccCCCC
Q 001066 759 ADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK-SRGSVVVIGATNRP 837 (1167)
Q Consensus 759 ~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~-~~~~ViVIaTTN~~ 837 (1167)
..+.+.|.+..+..++.+|..++...|+||||||||.|..++.........+++..|+..|+.+. ...+++||+|||.+
T Consensus 85 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~ 164 (322)
T 3eie_A 85 SDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 164 (322)
T ss_dssp HHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCG
T ss_pred HHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCCh
Confidence 99999999999999999999999999999999999999987655556667788999999999874 56679999999999
Q ss_pred CcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCh
Q 001066 838 EAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPL 917 (1167)
Q Consensus 838 d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~ 917 (1167)
+.|+++|++ ||...|+|+.|+.++|.+||+.++......+++.++..|+.++.||+++||..+|+.|...|+++....
T Consensus 165 ~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~ 242 (322)
T 3eie_A 165 WQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSA 242 (322)
T ss_dssp GGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHC
T ss_pred hhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999 999999999999999999999999988877888999999999999999999999999999998764210
Q ss_pred ---HHHHHHHHHH-----------------hhccccccCCccccCHHHHHHHhhcCCCCCCcccc
Q 001066 918 ---QEILSAAAEK-----------------AFCSKRVTLPSFAVEERDWLEALSCSPPPCSKREA 962 (1167)
Q Consensus 918 ---~di~~~~e~~-----------------~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~re~ 962 (1167)
..+....... +............|+..||..|++.++|+++..+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~ 307 (322)
T 3eie_A 243 THFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDL 307 (322)
T ss_dssp EEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHH
T ss_pred hhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHH
Confidence 0000000000 00000011223579999999999999998765544
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.97 E-value=5.6e-31 Score=292.88 Aligned_cols=263 Identities=35% Similarity=0.592 Sum_probs=209.2
Q ss_pred cccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccc
Q 001066 681 LFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGAD 760 (1167)
Q Consensus 681 ~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ 760 (1167)
+.++|++|+|++++++.|.+.+.+|+.+++.+..+++..+.+++|+||||||||+|+++||..++ ..++.+++.+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~-----~~~i~i~g~~ 79 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG-----LNFISVKGPE 79 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT-----CEEEEEETTT
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC-----CCEEEEEcHH
Confidence 45789999999999999999999999999999999999999999999999999999999999876 4688888888
Q ss_pred cchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcC
Q 001066 761 CLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAV 840 (1167)
Q Consensus 761 lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~L 840 (1167)
+...+.+..+..+..+|+.+....|+|+|+|||+.+...+.........++++.++..|++......++++++||.|+.|
T Consensus 80 l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 80 LLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII 159 (274)
T ss_dssp TCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC
Confidence 88888898899999999999888999999999999876443222222346778889999988777889999999999999
Q ss_pred CcccCCCCCcccccccCCCCHHHHHHHHHHhhccCC-C-CCChhHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHcCCC
Q 001066 841 DPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWP-K-PVTGSLLKWIAART--AGFAGADLQALCTQAAIIALKRNFP 916 (1167)
Q Consensus 841 d~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~-~-~l~d~~L~~LA~~t--~G~s~aDL~~Lv~~A~~~A~~R~i~ 916 (1167)
|++++|+|||+..|+|+.|+.++|.+||+.++.... . ...+.++..||..+ .||+++||.++|++|+..|+++.+.
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~ 239 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999886421 1 12456788999875 5999999999999999999876432
Q ss_pred hHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcCCCCCCcc
Q 001066 917 LQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPCSKR 960 (1167)
Q Consensus 917 ~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~r 960 (1167)
.... ........|+..||..|+.+++|+.+..
T Consensus 240 ~~~~------------~~~~~~~~i~~~df~~al~~~~ps~~~~ 271 (274)
T 2x8a_A 240 RQKS------------GNEKGELKVSHKHFEEAFKKVRSSISKK 271 (274)
T ss_dssp ----------------------CCBCHHHHHHHHTTCCCCC---
T ss_pred hccc------------cccccCCeecHHHHHHHHHHhcCCCChh
Confidence 1110 0111235799999999999999876543
No 15
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.97 E-value=7.5e-31 Score=294.97 Aligned_cols=275 Identities=32% Similarity=0.597 Sum_probs=224.4
Q ss_pred CcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 001066 680 KLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA 759 (1167)
Q Consensus 680 ~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~ 759 (1167)
.+..+|++|+|++.+++.|.+++.+|+.+++.|..+++.++.++||+||||||||++|++||..++ .+|+.+++.
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~-----~~~i~v~~~ 83 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISIKGP 83 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CEEEEECHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC-----CCEEEEEhH
Confidence 455789999999999999999999999999999999999999999999999999999999999886 689999999
Q ss_pred ccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcc---cccchHHHHHHHHHHhhcccCCCceEEEccCCC
Q 001066 760 DCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQ---QDQTHSSVVSTLLALMDGLKSRGSVVVIGATNR 836 (1167)
Q Consensus 760 ~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~---~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~ 836 (1167)
++...+++..+..++.+|..+....|+||||||||.|...+... ......+++..|+..|+++....+++||+|||.
T Consensus 84 ~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~ 163 (301)
T 3cf0_A 84 ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNR 163 (301)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESC
T ss_pred HHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCC
Confidence 99999999998999999999999999999999999987643321 122345788899999998877788999999999
Q ss_pred CCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCC
Q 001066 837 PEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFP 916 (1167)
Q Consensus 837 ~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~ 916 (1167)
++.++++++|+|||+..|+|+.|+.++|.+||+.++...... .+.++..|+..+.||+++||.++|++|...|..+.+.
T Consensus 164 ~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~ 242 (301)
T 3cf0_A 164 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIE 242 (301)
T ss_dssp GGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876543 4567889999999999999999999999999876431
Q ss_pred hHHHHHHHHHHhhcccc--ccCCccccCHHHHHHHhhcCCCCCCcc
Q 001066 917 LQEILSAAAEKAFCSKR--VTLPSFAVEERDWLEALSCSPPPCSKR 960 (1167)
Q Consensus 917 ~~di~~~~e~~~~~~~~--~~l~~i~It~~D~~~AL~~~~P~~S~r 960 (1167)
................. .......|+..||..|+..++|+.+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~ 288 (301)
T 3cf0_A 243 SEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN 288 (301)
T ss_dssp HHC--------------------CCCBCHHHHHHHHTTCCCSSCHH
T ss_pred hhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHH
Confidence 11000000000000000 001124689999999999998876543
No 16
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.97 E-value=1.7e-30 Score=299.13 Aligned_cols=283 Identities=28% Similarity=0.516 Sum_probs=223.7
Q ss_pred cccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccc
Q 001066 681 LFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGAD 760 (1167)
Q Consensus 681 ~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ 760 (1167)
+..+|++|+|++.+++.|.+++.+|+.+++.|.. +..++.+|||+||||||||+||++||..++ .+|+.+++.+
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~-----~~~~~v~~~~ 119 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEAN-----STFFSVSSSD 119 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHT-----CEEEEEEHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CCEEEeeHHH
Confidence 4568999999999999999999999999999987 457788999999999999999999999987 6899999999
Q ss_pred cchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccC-CCceEEEccCCCCCc
Q 001066 761 CLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKS-RGSVVVIGATNRPEA 839 (1167)
Q Consensus 761 lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~-~~~ViVIaTTN~~d~ 839 (1167)
+...|.+..+..++.+|..+....|+||||||||.|.+.+...+.....+++..|+..|+.+.. ..+++||+|||.++.
T Consensus 120 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ 199 (355)
T 2qp9_X 120 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ 199 (355)
T ss_dssp HHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGG
T ss_pred HhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCccc
Confidence 9999999999999999999999999999999999998766555555667888999999998753 567999999999999
Q ss_pred CCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCChH-
Q 001066 840 VDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQ- 918 (1167)
Q Consensus 840 Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~~- 918 (1167)
|+++++| ||+..|+|+.|+.++|.+||+.++...+..+++.++..|+..+.||+++||.++|++|.+.|+++.....
T Consensus 200 ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~ 277 (355)
T 2qp9_X 200 LDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATH 277 (355)
T ss_dssp SCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred CCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999 9999999999999999999999998877667888999999999999999999999999999987631000
Q ss_pred --HH--HHHHHHH---------------hhccccccCCccccCHHHHHHHhhcCCCCCCcccc--ccccccccc
Q 001066 919 --EI--LSAAAEK---------------AFCSKRVTLPSFAVEERDWLEALSCSPPPCSKREA--GIAAHDLVS 971 (1167)
Q Consensus 919 --di--~~~~e~~---------------~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~re~--~~a~~d~~~ 971 (1167)
.+ ....... +.......+....|+..||..|+..++|+++..+. ...|...|+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~~ 351 (355)
T 2qp9_X 278 FKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFG 351 (355)
T ss_dssp EEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHHTC
T ss_pred hhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 00 0000000 00000011223569999999999999998876543 334444443
No 17
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.96 E-value=1.1e-29 Score=300.61 Aligned_cols=285 Identities=29% Similarity=0.518 Sum_probs=223.3
Q ss_pred CcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 001066 680 KLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA 759 (1167)
Q Consensus 680 ~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~ 759 (1167)
.+..+|++|+|++.+++.|.+++.+|+.+++.|.. +..++++|||+||||||||+||++||..+. ..+|+.+++.
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~----~~~~~~v~~~ 202 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEAN----NSTFFSISSS 202 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCC----SSEEEEECCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcC----CCCEEEEeHH
Confidence 44578999999999999999999999999998875 346678999999999999999999999882 2588999999
Q ss_pred ccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc-CCCceEEEccCCCCC
Q 001066 760 DCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK-SRGSVVVIGATNRPE 838 (1167)
Q Consensus 760 ~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~-~~~~ViVIaTTN~~d 838 (1167)
++++.|.+..+..++.+|..+....|+||||||||.|.+.+.........++++.|+..|+++. ...+++||+|||.++
T Consensus 203 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~ 282 (444)
T 2zan_A 203 DLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 282 (444)
T ss_dssp ---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGG
T ss_pred HHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCcc
Confidence 9999999998889999999999999999999999999887666666667788999999998875 357899999999999
Q ss_pred cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCChH
Q 001066 839 AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQ 918 (1167)
Q Consensus 839 ~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~~ 918 (1167)
.++++|+| ||+..|+|+.|+.++|..||+.++...+..+++.++..|+..+.||+++||..+|+.|...|+++.....
T Consensus 283 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~~~ 360 (444)
T 2zan_A 283 VLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSAT 360 (444)
T ss_dssp GSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHHCS
T ss_pred ccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999 9999999999999999999999998877667889999999999999999999999999999987631100
Q ss_pred HHHHHH----------HHHhh----------------ccccccCCccccCHHHHHHHhhcCCCCCCcccc--cccccccc
Q 001066 919 EILSAA----------AEKAF----------------CSKRVTLPSFAVEERDWLEALSCSPPPCSKREA--GIAAHDLV 970 (1167)
Q Consensus 919 di~~~~----------e~~~~----------------~~~~~~l~~i~It~~D~~~AL~~~~P~~S~re~--~~a~~d~~ 970 (1167)
.+.... ..... ......+....|+..||..|+..++|+++..++ ...|...|
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~~~~ 440 (444)
T 2zan_A 361 HFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDF 440 (444)
T ss_dssp EEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHTSSC
T ss_pred hhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 000000 00000 000001123479999999999999998876654 34555555
Q ss_pred c
Q 001066 971 S 971 (1167)
Q Consensus 971 ~ 971 (1167)
+
T Consensus 441 ~ 441 (444)
T 2zan_A 441 G 441 (444)
T ss_dssp T
T ss_pred c
Confidence 4
No 18
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.96 E-value=9.5e-30 Score=304.24 Aligned_cols=263 Identities=41% Similarity=0.688 Sum_probs=228.6
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
.+|++|+|++.+++.|.+++.+|+.+++.|..++..++.+|||+||||||||++|++||..++ .+|+.+++..+.
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~-----~~fv~vn~~~l~ 275 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG-----AFFFLINGPEIM 275 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS-----SEEEEEEHHHHH
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC-----CCEEEEEchHhh
Confidence 578999999999999999999999999999999999999999999999999999999999885 689999999999
Q ss_pred hhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCCc
Q 001066 763 GKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDP 842 (1167)
Q Consensus 763 s~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~ 842 (1167)
+.+.+.....++.+|..+....|+||||||||.|.+++..........++..|+.+|+.+.....++||+|||.++.|++
T Consensus 276 ~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCG
T ss_pred hhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCH
Confidence 99999999999999999999999999999999999877666666777899999999999888889999999999999999
Q ss_pred ccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH
Q 001066 843 ALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQEILS 922 (1167)
Q Consensus 843 aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~~di~~ 922 (1167)
++++++||...|+|+.|+.++|.+||+.++..+... .+.++..++..+.||+++||..|+++|+..|.++.....++..
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~ 434 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTC
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccc
Confidence 999999999999999999999999999999876654 4467899999999999999999999999999988643211000
Q ss_pred HHHHHhhccccccCCccccCHHHHHHHhhcCCCCC
Q 001066 923 AAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPC 957 (1167)
Q Consensus 923 ~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~ 957 (1167)
............++..||..|+..++|+.
T Consensus 435 ------~~~~~~~~~~~~vt~edf~~Al~~~~ps~ 463 (489)
T 3hu3_A 435 ------ETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (489)
T ss_dssp ------SSCCHHHHHHCCBCHHHHHHHHTSHHHHH
T ss_pred ------cccchhhcccCcCCHHHHHHHHHhCCchh
Confidence 00000011235789999999999987643
No 19
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.95 E-value=6.8e-28 Score=268.56 Aligned_cols=272 Identities=32% Similarity=0.504 Sum_probs=219.9
Q ss_pred cccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccc
Q 001066 681 LFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGAD 760 (1167)
Q Consensus 681 ~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ 760 (1167)
+..+|++|+|++.+++.|.+++..|+.+++.|..++ .++.++||+||||||||++|+++|..++ .+|+.+++..
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~-----~~~~~i~~~~ 89 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECS-----ATFLNISAAS 89 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTT-----CEEEEEESTT
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhC-----CCeEEeeHHH
Confidence 346899999999999999999999998898887765 4578999999999999999999999886 6888899999
Q ss_pred cchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCC---CceEEEccCCCC
Q 001066 761 CLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSR---GSVVVIGATNRP 837 (1167)
Q Consensus 761 lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~---~~ViVIaTTN~~ 837 (1167)
+...+.+.....++.+|..+....|+||||||+|.+...+..........++..|+..++..... .+++||++||.+
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~ 169 (297)
T 3b9p_A 90 LTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRP 169 (297)
T ss_dssp TSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCG
T ss_pred HhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCCh
Confidence 99899999999999999999999999999999999987665544455567888899999877543 569999999999
Q ss_pred CcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCh
Q 001066 838 EAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPL 917 (1167)
Q Consensus 838 d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~ 917 (1167)
+.+++++++ ||...++++.|+.++|..||+.++......+++..+..|+..+.||++++|..+++.|+..+.++....
T Consensus 170 ~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~ 247 (297)
T 3b9p_A 170 QELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVE 247 (297)
T ss_dssp GGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--
T ss_pred hhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999998 999999999999999999999999887767788899999999999999999999999999998775321
Q ss_pred HHHHHHHHHHhhccccccCCccccCHHHHHHHhhcCCCCCCcccc--ccccccccc
Q 001066 918 QEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPCSKREA--GIAAHDLVS 971 (1167)
Q Consensus 918 ~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~re~--~~a~~d~~~ 971 (1167)
.. . .. .......|+..||..|+..++|+.+.... ...|...|+
T Consensus 248 ~~--~----~~-----~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~ 292 (297)
T 3b9p_A 248 QV--K----CL-----DISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYG 292 (297)
T ss_dssp -----------------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC----
T ss_pred hc--c----cc-----cccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 10 0 00 01123468999999999999887654332 334555444
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=1.1e-27 Score=264.92 Aligned_cols=245 Identities=38% Similarity=0.645 Sum_probs=211.0
Q ss_pred CcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 001066 680 KLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA 759 (1167)
Q Consensus 680 ~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~ 759 (1167)
.+..+|++|+|++.+++.|.+++..++..++.+..+++.++.++||+||||||||++|++||..++ .+++.+.+.
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~-----~~~~~v~~~ 85 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN-----ATFIRVVGS 85 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT-----CEEEEEEGG
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEehH
Confidence 345689999999999999999999999999999999999999999999999999999999999986 688888999
Q ss_pred ccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCccccc---chHHHHHHHHHHhhcccCCCceEEEccCCC
Q 001066 760 DCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQ---THSSVVSTLLALMDGLKSRGSVVVIGATNR 836 (1167)
Q Consensus 760 ~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~---~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~ 836 (1167)
.+...+.+.....+..+|..+....|+||||||||.+..++...... .....+..++..++.+....+++||+|||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~ 165 (285)
T 3h4m_A 86 ELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNR 165 (285)
T ss_dssp GGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSC
T ss_pred HHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC
Confidence 99999999999999999999999999999999999998655443222 223455556666666666778999999999
Q ss_pred CCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCC
Q 001066 837 PEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFP 916 (1167)
Q Consensus 837 ~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~ 916 (1167)
++.+++++++++||...+.|+.|+.++|.+||+.++...... .+..+..|+..+.||++++|..+++.|...|..+..
T Consensus 166 ~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~- 243 (285)
T 3h4m_A 166 PDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELR- 243 (285)
T ss_dssp GGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred chhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-
Confidence 999999999999999999999999999999999998876544 445689999999999999999999999999887642
Q ss_pred hHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcC
Q 001066 917 LQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCS 953 (1167)
Q Consensus 917 ~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~ 953 (1167)
..|+.+|+..|+..+
T Consensus 244 ----------------------~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 244 ----------------------DYVTMDDFRKAVEKI 258 (285)
T ss_dssp ----------------------SSBCHHHHHHHHHHH
T ss_pred ----------------------CcCCHHHHHHHHHHH
Confidence 246777887777654
No 21
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.95 E-value=8.9e-28 Score=276.44 Aligned_cols=271 Identities=29% Similarity=0.505 Sum_probs=221.5
Q ss_pred ccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc
Q 001066 682 FEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC 761 (1167)
Q Consensus 682 ~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l 761 (1167)
..+|++|+|++.+++.|.+++.+|+.+++.|...+ .++.+|||+||||||||+||++||..++ .+|+.+++..+
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~-----~~~~~i~~~~l 153 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSG-----ATFFSISASSL 153 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTT-----CEEEEEEGGGG
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcC-----CeEEEEehHHh
Confidence 46899999999999999999999999998887665 5678999999999999999999999886 68999999999
Q ss_pred chhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc--CCCceEEEccCCCCCc
Q 001066 762 LGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK--SRGSVVVIGATNRPEA 839 (1167)
Q Consensus 762 ls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~--~~~~ViVIaTTN~~d~ 839 (1167)
...+.+..+..++.+|..+....|+||||||||.|...+.........+++..|+..|++.. ...+++||+|||.++.
T Consensus 154 ~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~ 233 (357)
T 3d8b_A 154 TSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQE 233 (357)
T ss_dssp CCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGG
T ss_pred hccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhh
Confidence 99999999999999999999989999999999999876554445556678888999998764 3467999999999999
Q ss_pred CCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCChHH
Q 001066 840 VDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQE 919 (1167)
Q Consensus 840 Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~~d 919 (1167)
+++++++ ||...++++.|+.++|.+||+.++......+++..+..|+..+.||++++|..||+.|+..++++......
T Consensus 234 l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~ 311 (357)
T 3d8b_A 234 IDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADI 311 (357)
T ss_dssp BCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC---
T ss_pred CCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999 99999999999999999999999988777778899999999999999999999999999988875432110
Q ss_pred HHHHHHHHhhccccccCCccccCHHHHHHHhhcCCCCCCcccc--ccccccccc
Q 001066 920 ILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPCSKREA--GIAAHDLVS 971 (1167)
Q Consensus 920 i~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~re~--~~a~~d~~~ 971 (1167)
. .. .......|+..||..|+..++|+.+..+. ...|...|+
T Consensus 312 -~-----~~-----~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g 354 (357)
T 3d8b_A 312 -A-----TI-----TPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFG 354 (357)
T ss_dssp ------------------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHS
T ss_pred -c-----cc-----cccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhC
Confidence 0 00 00123568999999999999886654432 344555444
No 22
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.95 E-value=4.5e-27 Score=257.06 Aligned_cols=243 Identities=37% Similarity=0.595 Sum_probs=203.0
Q ss_pred cccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccc
Q 001066 681 LFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGAD 760 (1167)
Q Consensus 681 ~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ 760 (1167)
+..+|++|+|++.+++.+.+++.+ +.++..+..++...+.++||+||||||||++|++||..++ .+++.+++.+
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~-----~~~~~i~~~~ 80 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK-----VPFFTISGSD 80 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT-----CCEEEECSCS
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC-----CCEEEEeHHH
Confidence 346899999999999999998765 6778888888888899999999999999999999999886 5678888888
Q ss_pred cchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcc---cccchHHHHHHHHHHhhcccCCCceEEEccCCCC
Q 001066 761 CLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQ---QDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRP 837 (1167)
Q Consensus 761 lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~---~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~ 837 (1167)
+...+.+.....++.+|..+....|++|||||||.+...+... +......++..++..|+.+....+++||+|||.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~ 160 (257)
T 1lv7_A 81 FVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRP 160 (257)
T ss_dssp STTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCT
T ss_pred HHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCc
Confidence 8888888888899999999998889999999999998654322 1222346778888899888777889999999999
Q ss_pred CcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCCh
Q 001066 838 EAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPL 917 (1167)
Q Consensus 838 d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~ 917 (1167)
+.+++++++++||+..+.|+.|+.++|.+||+.++...... .+..+..++..+.||++++|.+++++|...|..++.
T Consensus 161 ~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~-~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~-- 237 (257)
T 1lv7_A 161 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK-- 237 (257)
T ss_dssp TTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCC-ccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC--
Confidence 99999999999999999999999999999999998876543 345678899999999999999999999998876542
Q ss_pred HHHHHHHHHHhhccccccCCccccCHHHHHHHhhcC
Q 001066 918 QEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCS 953 (1167)
Q Consensus 918 ~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~ 953 (1167)
..|+..||..|+..+
T Consensus 238 ---------------------~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 238 ---------------------RVVSMVEFEKAKDKI 252 (257)
T ss_dssp ---------------------SSBCHHHHHHHHHHH
T ss_pred ---------------------CcccHHHHHHHHHHH
Confidence 247788888887755
No 23
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=6.1e-30 Score=322.77 Aligned_cols=309 Identities=30% Similarity=0.550 Sum_probs=247.3
Q ss_pred ccCcchhHHHHHHHHHHhhhHHHHHHhhHHHHHhhhhhhhhhhhcc--ccCh---HHHHHhhHHHHHHHhhccCcccCCC
Q 001066 600 FQPYGDQYLARIKKLKARKMKMEIRKLSNDAWRKDMEAEEKWLENC--GEDE---EFLKREGKRLHRDLLRIAPVYIGGS 674 (1167)
Q Consensus 600 fqp~g~q~le~Lk~~tkk~sgAEI~~l~~~A~~~~i~r~~~~l~~~--~~d~---~~lk~~~~d~~~aL~~v~p~~~~~~ 674 (1167)
+....+..+..+...+.+|+++++..+++.|+..++.+........ ..+. ..+.....+|..++..+.|....
T Consensus 388 ~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~-- 465 (806)
T 1ypw_A 388 MKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALR-- 465 (806)
T ss_dssp SCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCC--
T ss_pred CCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCchhhh--
Confidence 3344555677888888999999999999888877765543222110 0000 11234556788888888776433
Q ss_pred CCCCCCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEE
Q 001066 675 DSDSGKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYF 754 (1167)
Q Consensus 675 ~~~~~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~ 754 (1167)
......+...|++++|++.+++.|.+++.+|+.++..+..+++.++.++||+||||||||+||++||..++ ..|+
T Consensus 466 ~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~-----~~~i 540 (806)
T 1ypw_A 466 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFI 540 (806)
T ss_dssp CCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT-----CCCC
T ss_pred hhcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC-----CCEE
Confidence 22334556789999999999999999999999999999999999999999999999999999999999987 5677
Q ss_pred EecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCccc---ccchHHHHHHHHHHhhcccCCCceEEE
Q 001066 755 ARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQ---DQTHSSVVSTLLALMDGLKSRGSVVVI 831 (1167)
Q Consensus 755 ~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~---~~~~~~vl~~LL~lLd~l~~~~~ViVI 831 (1167)
.+++..+...|+++.+..++.+|..++...|+||||||||.|...+.... .....++++.|+..|+++....+++||
T Consensus 541 ~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI 620 (806)
T 1ypw_A 541 SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFII 620 (806)
T ss_dssp CCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCC
T ss_pred EEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEE
Confidence 78899999999999999999999999999999999999999987654332 234567889999999988888889999
Q ss_pred ccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 001066 832 GATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIAL 911 (1167)
Q Consensus 832 aTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~ 911 (1167)
+|||+++.||++++|||||+..|+|+.|+.++|.+||+.++...... .+.++..|+..+.||++++|.++|+.|...|+
T Consensus 621 ~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~ 699 (806)
T 1ypw_A 621 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLAI 699 (806)
T ss_dssp CCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHH
T ss_pred EecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCC-cccCHHHHHHhccccCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998876543 44667888999999999999999999999999
Q ss_pred HcCCC
Q 001066 912 KRNFP 916 (1167)
Q Consensus 912 ~R~i~ 916 (1167)
++.+.
T Consensus 700 ~~~~~ 704 (806)
T 1ypw_A 700 RESIE 704 (806)
T ss_dssp SCC--
T ss_pred HHHHH
Confidence 88754
No 24
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.95 E-value=2e-27 Score=258.95 Aligned_cols=226 Identities=33% Similarity=0.575 Sum_probs=179.4
Q ss_pred ccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc
Q 001066 682 FEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC 761 (1167)
Q Consensus 682 ~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l 761 (1167)
..+|++|+|++.+++.|.+++.. +.+++.|..+++..+.++||+||||||||++|+++|..++ .+++.+++..+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~-----~~~~~~~~~~~ 75 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ-----VPFLAMAGAEF 75 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT-----CCEEEEETTTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEechHHH
Confidence 36899999999999999998876 7778888888999999999999999999999999999986 57888888888
Q ss_pred chhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCccc----ccchHHHHHHHHHHhhcccCCCceEEEccCCCC
Q 001066 762 LGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQ----DQTHSSVVSTLLALMDGLKSRGSVVVIGATNRP 837 (1167)
Q Consensus 762 ls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~----~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~ 837 (1167)
...+.+.....++.+|..+....|+||||||||.+...+.... .......+..|+..++......+++||+|||.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~ 155 (262)
T 2qz4_A 76 VEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRA 155 (262)
T ss_dssp SSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCG
T ss_pred HhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCCh
Confidence 8888888888999999999988899999999999976543221 122335667788888877667789999999999
Q ss_pred CcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChh-HHHHHHHHccCCcHHHHHHHHHHHHHHHHHc
Q 001066 838 EAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGS-LLKWIAARTAGFAGADLQALCTQAAIIALKR 913 (1167)
Q Consensus 838 d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~-~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R 913 (1167)
+.+++++++++||+..++|+.|+.++|.+||+.++.......... .+..|+..+.||++++|..+++.|...|..+
T Consensus 156 ~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~ 232 (262)
T 2qz4_A 156 DILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAARE 232 (262)
T ss_dssp GGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC----
T ss_pred hhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999998876654433 4578999999999999999999998887654
No 25
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.95 E-value=3.6e-27 Score=274.07 Aligned_cols=260 Identities=34% Similarity=0.538 Sum_probs=210.5
Q ss_pred cccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccc
Q 001066 681 LFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGAD 760 (1167)
Q Consensus 681 ~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ 760 (1167)
+..+|++|+|++.+++.|.+++.+|+.+++.|..++ .++.+|||+||||||||+||++||..++ .+|+.+++..
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~-----~~~~~v~~~~ 183 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESN-----ATFFNISAAS 183 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTT-----CEEEEECSCC
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhc-----CcEEEeeHHH
Confidence 346899999999999999999999999888888776 4578999999999999999999999987 6899999999
Q ss_pred cchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccC--CCceEEEccCCCCC
Q 001066 761 CLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKS--RGSVVVIGATNRPE 838 (1167)
Q Consensus 761 lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~--~~~ViVIaTTN~~d 838 (1167)
+.+.|.+..+..++.+|..+....|+||||||||.|...+.........+++..|+..|+++.. ..+++||+|||.++
T Consensus 184 l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~ 263 (389)
T 3vfd_A 184 LTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQ 263 (389)
T ss_dssp C-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGG
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCch
Confidence 9999999999999999999999999999999999998766555555667888899999987754 46799999999999
Q ss_pred cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCChH
Q 001066 839 AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQ 918 (1167)
Q Consensus 839 ~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~~ 918 (1167)
.+++++++ ||...|+|+.|+.++|.+||+.++......+++..+..|+..+.||++++|..|++.|+..++++-....
T Consensus 264 ~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~ 341 (389)
T 3vfd_A 264 ELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQ 341 (389)
T ss_dssp GCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC-
T ss_pred hcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999 9988999999999999999999998887778889999999999999999999999999998887643210
Q ss_pred HHHHHHHHHhhccccccCCccccCHHHHHHHhhcCCCCCCc
Q 001066 919 EILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPCSK 959 (1167)
Q Consensus 919 di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~S~ 959 (1167)
. ..........|+..||..++..+.|+.+.
T Consensus 342 ~-----------~~~~~~~~~~i~~~d~~~al~~~~~s~~~ 371 (389)
T 3vfd_A 342 V-----------KNMSASEMRNIRLSDFTESLKKIKRSVSP 371 (389)
T ss_dssp -------------CCSSSCCCCCCHHHHHHHHHHCCCSSCH
T ss_pred h-----------hccchhhcCCcCHHHHHHHHHHcCCCCCH
Confidence 0 00011123468999999999998876543
No 26
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.93 E-value=5.8e-25 Score=276.10 Aligned_cols=230 Identities=23% Similarity=0.288 Sum_probs=160.6
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC-----CceEEEEec
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-----KRIAYFARK 757 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-----~~i~~~~l~ 757 (1167)
..|++++|.+..++.+.+++.. ..+.++||+||||||||++|+++|..+.... ....++.++
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred CCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 3688999999999998887643 3467899999999999999999999885432 234677777
Q ss_pred ccccc--hhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCC
Q 001066 758 GADCL--GKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATN 835 (1167)
Q Consensus 758 ~~~ll--s~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN 835 (1167)
...+. ..+.+..+..++.+|..+....+.||||||+|.|.+++..... . ..+.++|..+...+.+.+|++|+
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~--~----~~~~~~L~~~l~~~~~~~I~at~ 323 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG--Q----VDAANLIKPLLSSGKIRVIGSTT 323 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSC--H----HHHHHHHSSCSSSCCCEEEEEEC
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcc--h----HHHHHHHHHHHhCCCeEEEEEeC
Confidence 66665 4678899999999999998878899999999999875433211 1 12344555555677899999998
Q ss_pred CCC-----cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccC----CCCCChhHHHHHHHHccC-----CcHHHHHH
Q 001066 836 RPE-----AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERW----PKPVTGSLLKWIAARTAG-----FAGADLQA 901 (1167)
Q Consensus 836 ~~d-----~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~----~~~l~d~~L~~LA~~t~G-----~s~aDL~~ 901 (1167)
.++ .++++|.+ ||. .|.|+.|+.+++.+||+.++..+ ...+++..+..++..+.+ +.+..+..
T Consensus 324 ~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~ 400 (758)
T 1r6b_X 324 YQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAID 400 (758)
T ss_dssp HHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHH
T ss_pred chHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHH
Confidence 653 56899998 995 79999999999999999877542 334455555555554433 23344445
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcC
Q 001066 902 LCTQAAIIALKRNFPLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCS 953 (1167)
Q Consensus 902 Lv~~A~~~A~~R~i~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~ 953 (1167)
++.+|...+.... .......++..|+..+++.+
T Consensus 401 lld~a~~~~~~~~-------------------~~~~~~~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 401 VIDEAGARARLMP-------------------VSKRKKTVNVADIESVVARI 433 (758)
T ss_dssp HHHHHHHHHHHSS-------------------SCCCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc-------------------ccccCCccCHHHHHHHHHHh
Confidence 5554433222110 00113457888998887754
No 27
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.93 E-value=4.1e-25 Score=241.12 Aligned_cols=229 Identities=37% Similarity=0.636 Sum_probs=189.5
Q ss_pred CCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 001066 679 GKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG 758 (1167)
Q Consensus 679 ~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~ 758 (1167)
..+..+|++|+|++.++..+.+++.. +..+..+..+++..+.+++|+||||||||+|+++||..+. ..++.+++
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~ 82 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASG 82 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeH
Confidence 34557899999999999999988765 5667788888888889999999999999999999999876 46777777
Q ss_pred cccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcc---cccchHHHHHHHHHHhhcccCCCceEEEccCC
Q 001066 759 ADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQ---QDQTHSSVVSTLLALMDGLKSRGSVVVIGATN 835 (1167)
Q Consensus 759 ~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~---~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN 835 (1167)
.++...+.+.....+..+|+.+....|+++||||||.+...+... .......++..++..|++......++++++||
T Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~ 162 (254)
T 1ixz_A 83 SDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATN 162 (254)
T ss_dssp HHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEES
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccC
Confidence 777777777777888999999887789999999999887543221 12233466778888888777667789999999
Q ss_pred CCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC
Q 001066 836 RPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRN 914 (1167)
Q Consensus 836 ~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~ 914 (1167)
.|+.+|++++|++||+..|+|+.|+.++|.+||+.++...... .+.++..||..+.||+++||.+++++|+..|..++
T Consensus 163 ~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~ 240 (254)
T 1ixz_A 163 RPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGADLENLLNEAALLAAREG 240 (254)
T ss_dssp CGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999888765432 34568899999999999999999999998887643
No 28
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.92 E-value=8.4e-27 Score=255.95 Aligned_cols=247 Identities=38% Similarity=0.601 Sum_probs=197.6
Q ss_pred cccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccc
Q 001066 681 LFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGAD 760 (1167)
Q Consensus 681 ~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ 760 (1167)
+...|++|+|.+.+++.|.+++.. +.+++.|..++...+.++||+||||||||++|++||..+. .+++.+++..
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~-----~~~~~v~~~~ 79 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH-----VPFFSMGGSS 79 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT-----CCCCCCCSCT
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CCEEEechHH
Confidence 346899999999999999998775 7888999999999999999999999999999999999987 4666777777
Q ss_pred cchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcc----cccchHHHHHHHHHHhhcccC-CCceEEEccCC
Q 001066 761 CLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQ----QDQTHSSVVSTLLALMDGLKS-RGSVVVIGATN 835 (1167)
Q Consensus 761 lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~----~~~~~~~vl~~LL~lLd~l~~-~~~ViVIaTTN 835 (1167)
+...+.+.....++.+|..+....|+||||||||.|...+... .......++..|+..|+.... ...++||+|||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn 159 (268)
T 2r62_A 80 FIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATN 159 (268)
T ss_dssp TTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBS
T ss_pred HHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecC
Confidence 7777777666667788999988899999999999998643211 111122345566777766543 34589999999
Q ss_pred CCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCC
Q 001066 836 RPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNF 915 (1167)
Q Consensus 836 ~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i 915 (1167)
.++.+++++++++||...|+|+.|+.++|.+||+.++..+... .+..+..|+..+.||++++|.+++++|...|..++
T Consensus 160 ~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~- 237 (268)
T 2r62_A 160 RPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN- 237 (268)
T ss_dssp CCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC-
T ss_pred CchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-
Confidence 9999999999999999999999999999999999998876543 34557788999999999999999999988765432
Q ss_pred ChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcCCCCC
Q 001066 916 PLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSPPPC 957 (1167)
Q Consensus 916 ~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~P~~ 957 (1167)
...|+..++..|+..+.|..
T Consensus 238 ----------------------~~~i~~~~~~~a~~~~~~~~ 257 (268)
T 2r62_A 238 ----------------------QKEVRQQHLKEAVERGIAGL 257 (268)
T ss_dssp ----------------------CCSCCHHHHHTSCTTCCCCC
T ss_pred ----------------------cCCcCHHHHHHHHHHHhhcc
Confidence 13477888888888776544
No 29
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.92 E-value=5.7e-24 Score=235.71 Aligned_cols=227 Identities=37% Similarity=0.643 Sum_probs=187.3
Q ss_pred cccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccc
Q 001066 681 LFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGAD 760 (1167)
Q Consensus 681 ~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ 760 (1167)
+..+|++|+|.++++..+..++.. +..+..+..+++..+.+++|+||||||||+|+++||..+. ..++.+++.+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~ 108 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSD 108 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHH
Confidence 557899999999999999988765 5567788888888888999999999999999999999876 4677777777
Q ss_pred cchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcc---cccchHHHHHHHHHHhhcccCCCceEEEccCCCC
Q 001066 761 CLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQ---QDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRP 837 (1167)
Q Consensus 761 lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~---~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~ 837 (1167)
+...+.+.....+..+|+.+....|+++||||||.+...+... ........+..++..|++......++++++||.|
T Consensus 109 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p 188 (278)
T 1iy2_A 109 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRP 188 (278)
T ss_dssp HHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCT
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCc
Confidence 7766777777888899999987789999999999886533211 1122345667777788877666678999999999
Q ss_pred CcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcC
Q 001066 838 EAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRN 914 (1167)
Q Consensus 838 d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~ 914 (1167)
+.+|++++|++||+..|+|+.|+.++|.+||+.++...... .+..+..|+..+.||+++||.+++++|...|..++
T Consensus 189 ~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~ 264 (278)
T 1iy2_A 189 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGADLENLLNEAALLAAREG 264 (278)
T ss_dssp TSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999888765432 34568899999999999999999999998887643
No 30
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.91 E-value=5.8e-24 Score=267.18 Aligned_cols=193 Identities=24% Similarity=0.322 Sum_probs=140.3
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC-----CceEEEEec
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-----KRIAYFARK 757 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-----~~i~~~~l~ 757 (1167)
..|++|+|.+..++++.+++.. ....++||+||||||||++|++||..+.... ....++.++
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 3688999999999999888754 3456899999999999999999999984422 235566665
Q ss_pred ccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCC
Q 001066 758 GADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRP 837 (1167)
Q Consensus 758 ~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~ 837 (1167)
+ ...|.|+++..++.+|..+....+.||||| .. ...+ +.|......+.+++|++||..
T Consensus 244 ~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~----------~~~~----~~L~~~l~~~~v~~I~at~~~ 301 (758)
T 3pxi_A 244 M---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA----------IDAS----NILKPSLARGELQCIGATTLD 301 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------CCCTTSSSCEEEEECCTT
T ss_pred c---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc----------hhHH----HHHHHHHhcCCEEEEeCCChH
Confidence 5 456788889999999999999899999999 10 0122 233333346789999999998
Q ss_pred C-----cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhcc----CCCCCChhHHHHHHHHcc-----CCcHHHHHHHH
Q 001066 838 E-----AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTER----WPKPVTGSLLKWIAARTA-----GFAGADLQALC 903 (1167)
Q Consensus 838 d-----~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~----~~~~l~d~~L~~LA~~t~-----G~s~aDL~~Lv 903 (1167)
+ .++++|+| || ..|.|+.|+.+++.+||+.++.. ....+++..+..++..+. ++.+.....++
T Consensus 302 ~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll 378 (758)
T 3pxi_A 302 EYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLI 378 (758)
T ss_dssp TTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHH
T ss_pred HHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHH
Confidence 7 78999999 99 67999999999999999988776 355677788888877654 44567777777
Q ss_pred HHHHHHHHHc
Q 001066 904 TQAAIIALKR 913 (1167)
Q Consensus 904 ~~A~~~A~~R 913 (1167)
..|...+..+
T Consensus 379 ~~a~~~~~~~ 388 (758)
T 3pxi_A 379 DEAGSKVRLR 388 (758)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 7776655443
No 31
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.90 E-value=8.8e-23 Score=259.60 Aligned_cols=208 Identities=25% Similarity=0.364 Sum_probs=142.7
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC-----CceEEEEec
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-----KRIAYFARK 757 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-----~~i~~~~l~ 757 (1167)
..|++++|.++.++++.+++.. ..+.++||+||||||||++|+++|..+.... ....++.++
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred CCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 4689999999999999887743 3456799999999999999999999984422 246788888
Q ss_pred ccccc--hhhhchHHHHHHHHHHHHHhc-CCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccC
Q 001066 758 GADCL--GKYVGDAERQLRLLFQVAEKC-QPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGAT 834 (1167)
Q Consensus 758 ~~~ll--s~~~g~~e~~L~~lF~~A~~~-~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTT 834 (1167)
+..+. ..+.+..+..++.+|..+... .+.||||||||.|.+.+...+. ..+.+.|..++ ..+.+.+|++|
T Consensus 234 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~---~~~~~~L~~~l----~~~~i~~I~at 306 (854)
T 1qvr_A 234 MGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGA---VDAGNMLKPAL----ARGELRLIGAT 306 (854)
T ss_dssp C-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHH----HTTCCCEEEEE
T ss_pred hHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccch---HHHHHHHHHHH----hCCCeEEEEec
Confidence 87776 567888999999999998875 6889999999999864433221 12233344444 35678899999
Q ss_pred CCCC----cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccC----CCCCChhHHHHHHHHcc-----CCcHHHHHH
Q 001066 835 NRPE----AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERW----PKPVTGSLLKWIAARTA-----GFAGADLQA 901 (1167)
Q Consensus 835 N~~d----~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~----~~~l~d~~L~~LA~~t~-----G~s~aDL~~ 901 (1167)
+.++ .++++|.+ ||. .|.|+.|+.+++.+||+.++..+ ...+++..+..++..+. .|.+.....
T Consensus 307 ~~~~~~~~~~d~aL~r--Rf~-~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~ 383 (854)
T 1qvr_A 307 TLDEYREIEKDPALER--RFQ-PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAID 383 (854)
T ss_dssp CHHHHHHHTTCTTTCS--CCC-CEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHH
T ss_pred CchHHhhhccCHHHHh--CCc-eEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHH
Confidence 8764 47999999 996 59999999999999998776643 45567788888887664 456777777
Q ss_pred HHHHHHHHHHHc
Q 001066 902 LCTQAAIIALKR 913 (1167)
Q Consensus 902 Lv~~A~~~A~~R 913 (1167)
++.+|...+..+
T Consensus 384 lldea~a~~~~~ 395 (854)
T 1qvr_A 384 LIDEAAARLRMA 395 (854)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 777776665544
No 32
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.84 E-value=1.8e-21 Score=218.14 Aligned_cols=175 Identities=17% Similarity=0.215 Sum_probs=134.2
Q ss_pred cCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHH----HhcCCcEEEE
Q 001066 715 LGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVA----EKCQPSIIFF 790 (1167)
Q Consensus 715 lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A----~~~~psILfI 790 (1167)
.+..++.++||+||||||||+||++||..++ .+|+.+++..+...|.|..+..++.+|..+ +...|+||||
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~-----~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~i 105 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMG-----INPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFI 105 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHT-----CCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEE
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 3567788999999999999999999999997 678888999999999999999999999988 4678999999
Q ss_pred cCCCCcCcccCcc--cccchHHHHHHHHHHhhccc-----------CCCceEEEccCCCCCcCCcccCCCCCcccccccC
Q 001066 791 DEIDGLAPCRTRQ--QDQTHSSVVSTLLALMDGLK-----------SRGSVVVIGATNRPEAVDPALRRPGRFDREIYFP 857 (1167)
Q Consensus 791 DEID~L~~~~~~~--~~~~~~~vl~~LL~lLd~l~-----------~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~ 857 (1167)
||||.+.+..... .......++..|+.+|+... ...+++||+|||.++.++++|+|++||+..|.
T Consensus 106 DEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~-- 183 (293)
T 3t15_A 106 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW-- 183 (293)
T ss_dssp ECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--
T ss_pred echhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--
Confidence 9999998743321 11234467789999998432 45679999999999999999999899988886
Q ss_pred CCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHH
Q 001066 858 LPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQA 901 (1167)
Q Consensus 858 ~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~ 901 (1167)
.|+.++|.+|++.++.... ..+..++..+.+|++++|..
T Consensus 184 ~P~~~~r~~Il~~~~~~~~-----~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 184 APTREDRIGVCTGIFRTDN-----VPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp CCCHHHHHHHHHHHHGGGC-----CCHHHHHHHHHHSCSCCHHH
T ss_pred CcCHHHHHHHHHHhccCCC-----CCHHHHHHHhCCCCcccHHH
Confidence 4699999999998886532 33667788888898888764
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.80 E-value=4.5e-19 Score=198.04 Aligned_cols=217 Identities=23% Similarity=0.273 Sum_probs=172.5
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhccCCC---CCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC--ceEEEEeccccc
Q 001066 687 SVAGLQDVIRCMKEVVILPLLYPEFFDNLGLT---PPRGVLLHGHPGTGKTLVVRALIGSCARGDK--RIAYFARKGADC 761 (1167)
Q Consensus 687 dL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~---~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~--~i~~~~l~~~~l 761 (1167)
+|+|++.+++.|.+++..+. .+..+..+|+. +..++||+||||||||++|+++|..+..... ..+++.+++..+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 68999999999999987744 35555555543 3457999999999999999999999865322 347888899999
Q ss_pred chhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCC---
Q 001066 762 LGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPE--- 838 (1167)
Q Consensus 762 ls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d--- 838 (1167)
...+++.....+..+|..+ .++||||||+|.|...+. .......++..|+..|+.. ..+++||++||...
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~--~~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~~~~~~ 183 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMENN--RDDLVVILAGYADRMEN 183 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHC--TTTCEEEEEECHHHHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCC--cccccHHHHHHHHHHHhcC--CCCEEEEEeCChHHHHH
Confidence 9999998888888888876 568999999999985432 2334567888899998854 35678888887653
Q ss_pred --cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHH-------ccCCcHHHHHHHHHHHHHH
Q 001066 839 --AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAAR-------TAGFAGADLQALCTQAAII 909 (1167)
Q Consensus 839 --~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~-------t~G~s~aDL~~Lv~~A~~~ 909 (1167)
.++++|++ ||...|+|++|+.+++.+||+.++......+++..+..++.. ....+.++|.+++.+|...
T Consensus 184 ~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~ 261 (309)
T 3syl_A 184 FFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLR 261 (309)
T ss_dssp HHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHH
T ss_pred HHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHH
Confidence 35789998 999999999999999999999999988877888888888887 3345689999999988876
Q ss_pred HHHc
Q 001066 910 ALKR 913 (1167)
Q Consensus 910 A~~R 913 (1167)
+..|
T Consensus 262 ~~~r 265 (309)
T 3syl_A 262 QANR 265 (309)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 34
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.75 E-value=8.2e-20 Score=216.82 Aligned_cols=204 Identities=20% Similarity=0.273 Sum_probs=141.5
Q ss_pred CcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 001066 680 KLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA 759 (1167)
Q Consensus 680 ~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~ 759 (1167)
.+...|++|+|++++++.+..++... ..+..+++++||+||||||||++|+++|..++.. ++|+.+++.
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~---~~~~~~~~~ 99 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSK---VPFCPMVGS 99 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTT---SCEEEEEGG
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCC---ceEEEEeHH
Confidence 44556899999999999988877542 2255667899999999999999999999998742 688999999
Q ss_pred ccchhhhchHHHHHHHHHHHH---HhcCCcEEEEcCCCCcCcccCcccccch-------------------HHHHHHHHH
Q 001066 760 DCLGKYVGDAERQLRLLFQVA---EKCQPSIIFFDEIDGLAPCRTRQQDQTH-------------------SSVVSTLLA 817 (1167)
Q Consensus 760 ~lls~~~g~~e~~L~~lF~~A---~~~~psILfIDEID~L~~~~~~~~~~~~-------------------~~vl~~LL~ 817 (1167)
.+...+.+..+. ++.+|..+ +...|+||||||||.+.+++........ .++...++.
T Consensus 100 ~~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~ 178 (456)
T 2c9o_A 100 EVYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFE 178 (456)
T ss_dssp GGCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHH
T ss_pred HHHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHH
Confidence 999999999887 99999998 7788999999999999976543321110 012223455
Q ss_pred Hhhc--ccCCCceEEEccCCCCCcCCcccCCCCCccc--ccccCCC--CHHHHHHHHHHhhccCCCCCChhHHHHHHHHc
Q 001066 818 LMDG--LKSRGSVVVIGATNRPEAVDPALRRPGRFDR--EIYFPLP--SMEDRAAILSLHTERWPKPVTGSLLKWIAART 891 (1167)
Q Consensus 818 lLd~--l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~--~I~~~~P--~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t 891 (1167)
.|+. +.....++|++|||.++.++++++|++||+. .+.+|.| +.++|.+||+.+. ..++..++..+
T Consensus 179 ~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~--------~~dl~~~a~~t 250 (456)
T 2c9o_A 179 SLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVT--------LHDLDVANARP 250 (456)
T ss_dssp HHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEE--------HHHHHHTC---
T ss_pred HHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHH--------HHHHHHHHHhC
Confidence 5542 2333346667999999999999999999988 5666777 4577888876543 24688899999
Q ss_pred cCCcHHHHHHHHHH
Q 001066 892 AGFAGADLQALCTQ 905 (1167)
Q Consensus 892 ~G~s~aDL~~Lv~~ 905 (1167)
.| ++||.++|..
T Consensus 251 ~g--gadl~~l~~~ 262 (456)
T 2c9o_A 251 QG--GQDILSMMGQ 262 (456)
T ss_dssp --------------
T ss_pred CC--hhHHHHHHhh
Confidence 99 9999999854
No 35
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.73 E-value=3.8e-17 Score=186.84 Aligned_cols=223 Identities=19% Similarity=0.209 Sum_probs=158.2
Q ss_pred CcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 001066 680 KLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA 759 (1167)
Q Consensus 680 ~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~ 759 (1167)
.+...|++++|.+..++.+..++... . .+..++.++||+||||||||++|+++|..+... .+++.+.+.
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~-------~-~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~---~~~~~~~~~ 106 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMI-------R-EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD---TPFTAIAGS 106 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH-------H-TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS---CCEEEEEGG
T ss_pred CcCcchhhccChHHHHHHHHHHHHHH-------H-cCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc---CCcccccch
Confidence 44456999999999998876655331 1 133446799999999999999999999998732 355555544
Q ss_pred ccchhh-------------------------------------------------hchHHHHHHHHHHHHHh--------
Q 001066 760 DCLGKY-------------------------------------------------VGDAERQLRLLFQVAEK-------- 782 (1167)
Q Consensus 760 ~lls~~-------------------------------------------------~g~~e~~L~~lF~~A~~-------- 782 (1167)
.+...+ .+.....++..|..+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~ 186 (368)
T 3uk6_A 107 EIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKA 186 (368)
T ss_dssp GGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC-
T ss_pred hhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccc
Confidence 322211 11222334444443322
Q ss_pred -cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccC-----------CCCCcCCcccCCCCCc
Q 001066 783 -CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGAT-----------NRPEAVDPALRRPGRF 850 (1167)
Q Consensus 783 -~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTT-----------N~~d~Ld~aLlrpgRF 850 (1167)
..|+||||||||.+.. ..++.|+..++.... .+++|++. |.+..++++|++ ||
T Consensus 187 ~~~~~vl~IDEi~~l~~-----------~~~~~L~~~le~~~~--~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~ 251 (368)
T 3uk6_A 187 EIIPGVLFIDEVHMLDI-----------ESFSFLNRALESDMA--PVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RL 251 (368)
T ss_dssp --CBCEEEEESGGGSBH-----------HHHHHHHHHTTCTTC--CEEEEEESCSEEECBTSSCEEETTCCHHHHT--TE
T ss_pred cccCceEEEhhccccCh-----------HHHHHHHHHhhCcCC--CeeeeecccceeeeeccCCCCcccCCHHHHh--hc
Confidence 1267999999998864 566777777765322 34444443 346788999999 99
Q ss_pred ccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhc
Q 001066 851 DREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQEILSAAAEKAFC 930 (1167)
Q Consensus 851 ~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~~di~~~~e~~~~~ 930 (1167)
.. |.|++|+.+++.+||+.++......+++..+..|+..+.+.+++++.+++..|...|..++.
T Consensus 252 ~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~--------------- 315 (368)
T 3uk6_A 252 LI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKG--------------- 315 (368)
T ss_dssp EE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTC---------------
T ss_pred cE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC---------------
Confidence 54 89999999999999999988877778889999999999866889999999999888865532
Q ss_pred cccccCCccccCHHHHHHHhhc
Q 001066 931 SKRVTLPSFAVEERDWLEALSC 952 (1167)
Q Consensus 931 ~~~~~l~~i~It~~D~~~AL~~ 952 (1167)
..|+..++..++..
T Consensus 316 --------~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 316 --------TEVQVDDIKRVYSL 329 (368)
T ss_dssp --------SSBCHHHHHHHHHH
T ss_pred --------CCCCHHHHHHHHHH
Confidence 24677777777664
No 36
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.69 E-value=4.6e-16 Score=176.23 Aligned_cols=196 Identities=18% Similarity=0.200 Sum_probs=150.9
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
.+|++++|.+..++.+..++..... .-.+..++||+||||||||++|+++|..++ .+|+.+++..+.
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~-----~~~~~~~~~~~~ 92 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMS-----ANIKTTAAPMIE 92 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTT-----CCEEEEEGGGCC
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhC-----CCeEEecchhcc
Confidence 3799999999999999998865311 113456899999999999999999999876 456666665432
Q ss_pred hhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccC----------------CC
Q 001066 763 GKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKS----------------RG 826 (1167)
Q Consensus 763 s~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~----------------~~ 826 (1167)
. ...+..++.. ...+++||||||+.+.. .++..|+..|+.... ..
T Consensus 93 ~------~~~~~~~~~~--~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3pfi_A 93 K------SGDLAAILTN--LSEGDILFIDEIHRLSP-----------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP 153 (338)
T ss_dssp S------HHHHHHHHHT--CCTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCC---------CCCCCCCCC
T ss_pred c------hhHHHHHHHh--ccCCCEEEEechhhcCH-----------HHHHHHHHHHHhccchhhcccCccccceecCCC
Confidence 1 1223333322 34679999999998864 566777777765321 12
Q ss_pred ceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHH
Q 001066 827 SVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQA 906 (1167)
Q Consensus 827 ~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A 906 (1167)
.+++|++||....++++|++ ||+..+.|++|+.+++..|++.++......+++..+..|+..+.| +++.+.+++.++
T Consensus 154 ~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~ 230 (338)
T 3pfi_A 154 KFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRV 230 (338)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHH
T ss_pred CeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHH
Confidence 48999999999999999998 999999999999999999999999887777788889999996655 677888888888
Q ss_pred HHHHHHc
Q 001066 907 AIIALKR 913 (1167)
Q Consensus 907 ~~~A~~R 913 (1167)
...+...
T Consensus 231 ~~~a~~~ 237 (338)
T 3pfi_A 231 RDFADVN 237 (338)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 7666543
No 37
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.69 E-value=1.2e-16 Score=176.20 Aligned_cols=227 Identities=19% Similarity=0.227 Sum_probs=144.5
Q ss_pred HHhhccCcccCCCCCCCCCcccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHH
Q 001066 662 DLLRIAPVYIGGSDSDSGKLFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALI 741 (1167)
Q Consensus 662 aL~~v~p~~~~~~~~~~~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA 741 (1167)
+..+++|.|+...+...... ...++|.....+.+...... ....+...+..++.++||+||||||||++|++||
T Consensus 12 ~~~~~~~~fg~~~~~l~~~~---~~~~i~~~~~~~~i~~~~~~---l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia 85 (272)
T 1d2n_A 12 STMDIKPAFGTNQEDYASYI---MNGIIKWGDPVTRVLDDGEL---LVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIA 85 (272)
T ss_dssp -------------CCSTTTC---TTCCCCCSHHHHHHHHHHHH---HHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHH
T ss_pred CccccCCCCCCCHHHHHHHH---hcCCCCccHHHHHHHHHHHH---HHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHH
Confidence 44567777755444333222 24567777766666553111 1122333344667899999999999999999999
Q ss_pred HHhhcCCCceEEEEecccccc-hhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhh
Q 001066 742 GSCARGDKRIAYFARKGADCL-GKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMD 820 (1167)
Q Consensus 742 ~~l~~~~~~i~~~~l~~~~ll-s~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd 820 (1167)
..++ .+|+.+++.+.+ +.........++.+|..+....++||||||||.|.+... ........++..|..+++
T Consensus 86 ~~~~-----~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~-~~~~~~~~~l~~L~~~~~ 159 (272)
T 1d2n_A 86 EESN-----FPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVP-IGPRFSNLVLQALLVLLK 159 (272)
T ss_dssp HHHT-----CSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBT-TTTBCCHHHHHHHHHHTT
T ss_pred HHhC-----CCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCC-CChhHHHHHHHHHHHHhc
Confidence 9876 466666555432 222233446678889988877899999999999976432 233445677788888887
Q ss_pred cccC-CCceEEEccCCCCCcCCc-ccCCCCCcccccccCCCCH-HHHHHHHHHhhccCCCCCChhHHHHHHHHccCC---
Q 001066 821 GLKS-RGSVVVIGATNRPEAVDP-ALRRPGRFDREIYFPLPSM-EDRAAILSLHTERWPKPVTGSLLKWIAARTAGF--- 894 (1167)
Q Consensus 821 ~l~~-~~~ViVIaTTN~~d~Ld~-aLlrpgRF~~~I~~~~P~~-eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~--- 894 (1167)
.... ...++||+|||.++.+++ .+.+ ||...|.+|+++. ++...++.. . ..+++..+..|+..+.||
T Consensus 160 ~~~~~~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~---~--~~~~~~~~~~l~~~~~g~~~~ 232 (272)
T 1d2n_A 160 KAPPQGRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIATGEQLLEALEL---L--GNFKDKERTTIAQQVKGKKVW 232 (272)
T ss_dssp CCCSTTCEEEEEEEESCHHHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHH---H--TCSCHHHHHHHHHHHTTSEEE
T ss_pred CccCCCCCEEEEEecCChhhcchhhhhc--ccceEEcCCCccHHHHHHHHHHh---c--CCCCHHHHHHHHHHhcCCCcc
Confidence 6543 446889999999988887 5665 9988888877665 444444443 2 234678899999999887
Q ss_pred -cHHHHHHHHHHHH
Q 001066 895 -AGADLQALCTQAA 907 (1167)
Q Consensus 895 -s~aDL~~Lv~~A~ 907 (1167)
..+++.+++..|.
T Consensus 233 g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 233 IGIKKLLMLIEMSL 246 (272)
T ss_dssp ECHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHh
Confidence 4566666666553
No 38
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.69 E-value=7.1e-17 Score=179.39 Aligned_cols=243 Identities=20% Similarity=0.240 Sum_probs=162.5
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhcc-CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccch-h
Q 001066 687 SVAGLQDVIRCMKEVVILPLLYPEFFDNL-GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLG-K 764 (1167)
Q Consensus 687 dL~Gle~~k~~L~e~l~~pl~~~e~~~~l-gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls-~ 764 (1167)
.|+|++.+++.+...+..++........+ ....+.++||+||||||||++|+++|..++ .+++.+++..+.. .
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~-----~~~~~i~~~~~~~~~ 90 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKFTEVG 90 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT-----CCEEEEEGGGGSSCC
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEcchhcccCC
Confidence 47999999999998886543222111110 013467899999999999999999999986 4677777776654 4
Q ss_pred hhch-HHHHHHHHHHHH-----HhcCCcEEEEcCCCCcCcccCccccc-chHHHHHHHHHHhhccc--------CCCceE
Q 001066 765 YVGD-AERQLRLLFQVA-----EKCQPSIIFFDEIDGLAPCRTRQQDQ-THSSVVSTLLALMDGLK--------SRGSVV 829 (1167)
Q Consensus 765 ~~g~-~e~~L~~lF~~A-----~~~~psILfIDEID~L~~~~~~~~~~-~~~~vl~~LL~lLd~l~--------~~~~Vi 829 (1167)
|++. ....++.++..+ ....++||||||||.+.......+.. ....++..|+.+|+... ....++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 170 (310)
T 1ofh_A 91 YVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHIL 170 (310)
T ss_dssp SGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCE
T ss_pred ccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEE
Confidence 4443 234455555422 11246899999999998644322222 22345778888888641 234688
Q ss_pred EEcc----CCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhh-------------ccCCCCCChhHHHHHHHHcc
Q 001066 830 VIGA----TNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHT-------------ERWPKPVTGSLLKWIAARTA 892 (1167)
Q Consensus 830 VIaT----TN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l-------------~~~~~~l~d~~L~~LA~~t~ 892 (1167)
||++ ++.+..++++|++ ||...|.|++|+.+++.+||+..+ ......+++..+..|+..+.
T Consensus 171 ~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 248 (310)
T 1ofh_A 171 FIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAF 248 (310)
T ss_dssp EEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHH
T ss_pred EEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhh
Confidence 8888 4567789999998 999889999999999999998321 11223467788888888773
Q ss_pred -------CCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcC
Q 001066 893 -------GFAGADLQALCTQAAIIALKRNFPLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCS 953 (1167)
Q Consensus 893 -------G~s~aDL~~Lv~~A~~~A~~R~i~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~ 953 (1167)
....+.|.+++.++...+..+. . ...-..+.|+.+++..++...
T Consensus 249 ~~~~~~~~g~~R~l~~~l~~~~~~~~~~~--------------~---~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 249 RVNEKTENIGARRLHTVMERLMDKISFSA--------------S---DMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHHHSCCCTTHHHHHHHHHHSHHHHHHG--------------G---GCTTCEEEECHHHHHHHTCSS
T ss_pred hhcccccccCcHHHHHHHHHHHHhhhcCC--------------c---cccCCEEEEeeHHHHHHHHhh
Confidence 3567778888777654432111 0 001123458899999988755
No 39
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.66 E-value=2e-15 Score=157.55 Aligned_cols=190 Identities=22% Similarity=0.174 Sum_probs=138.4
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
..|++++|.+..++.+.+++... ...++||+||||||||++|++++..+........++.+++....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER 80 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTT
T ss_pred CCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccccc
Confidence 46888999999999999887541 23359999999999999999999987544444556666554332
Q ss_pred hhhhchHHHHHHHHHHHHH------hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCC
Q 001066 763 GKYVGDAERQLRLLFQVAE------KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNR 836 (1167)
Q Consensus 763 s~~~g~~e~~L~~lF~~A~------~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~ 836 (1167)
.. ..+...+.... ...+.||||||++.+.. ..+..|+.+++.. ..++++|++||.
T Consensus 81 ~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~~--~~~~~~i~~~~~ 141 (226)
T 2chg_A 81 GI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEMY--SKSCRFILSCNY 141 (226)
T ss_dssp CH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH-----------HHHHHHHHHHHHT--TTTEEEEEEESC
T ss_pred Ch------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCH-----------HHHHHHHHHHHhc--CCCCeEEEEeCC
Confidence 21 11222222221 24678999999998864 3455677777653 345778888999
Q ss_pred CCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHH
Q 001066 837 PEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAI 908 (1167)
Q Consensus 837 ~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~ 908 (1167)
+..+++++.+ ||. .+.|++|+.+++.++|..++...+..+++..+..|+..+.| +++.+.+++..+..
T Consensus 142 ~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~ 209 (226)
T 2chg_A 142 VSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAA 209 (226)
T ss_dssp GGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred hhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHh
Confidence 9899999988 885 89999999999999999988766666788888889987766 55555555555543
No 40
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.65 E-value=3.7e-16 Score=189.40 Aligned_cols=230 Identities=19% Similarity=0.175 Sum_probs=148.3
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccch-
Q 001066 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLG- 763 (1167)
Q Consensus 685 ~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls- 763 (1167)
+++++|+++++..+.+.+...... +.+ +..++||+||||||||+||++||..+. .++..+++..+..
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~------~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~i~~~~~~~~ 147 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLT------KSL-KGPILCLAGPPGVGKTSLAKSIAKSLG-----RKFVRISLGGVRDE 147 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHS------SSC-CSCEEEEESSSSSSHHHHHHHHHHHHT-----CEEEEECCCC----
T ss_pred HHHhccHHHHHHHHHHHHHHHHhc------ccC-CCCEEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEecccchh
Confidence 567999999999998876553211 111 456899999999999999999999986 4566555443321
Q ss_pred --------hhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccC-----------
Q 001066 764 --------KYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKS----------- 824 (1167)
Q Consensus 764 --------~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~----------- 824 (1167)
.|++.....+..+|..+....| ||||||||.+..... ...+..|+..|+....
T Consensus 148 ~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~-------~~~~~~LL~~ld~~~~~~~~~~~~~~~ 219 (543)
T 3m6a_A 148 SEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR-------GDPSSAMLEVLDPEQNSSFSDHYIEET 219 (543)
T ss_dssp ----------------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCC
T ss_pred hhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc-------cCHHHHHHHHHhhhhcceeecccCCee
Confidence 4556666666777777655555 999999999986321 1244567777764321
Q ss_pred --CCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhcc-----C-----CCCCChhHHHHHHHHcc
Q 001066 825 --RGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTER-----W-----PKPVTGSLLKWIAARTA 892 (1167)
Q Consensus 825 --~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~-----~-----~~~l~d~~L~~LA~~t~ 892 (1167)
..+++||+|||.++.++++|++ || ..|.|+.|+.+++.+||..++-. . ...+++..+..|+....
T Consensus 220 ~~~~~v~iI~ttN~~~~l~~aL~~--R~-~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~ 296 (543)
T 3m6a_A 220 FDLSKVLFIATANNLATIPGPLRD--RM-EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYT 296 (543)
T ss_dssp CBCSSCEEEEECSSTTTSCHHHHH--HE-EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHC
T ss_pred ecccceEEEeccCccccCCHHHHh--hc-ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCC
Confidence 1568999999999999999999 99 57999999999999999987621 2 23356777888776444
Q ss_pred -CCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhccccccCCccccCHHHHHHHhhcCC
Q 001066 893 -GFAGADLQALCTQAAIIALKRNFPLQEILSAAAEKAFCSKRVTLPSFAVEERDWLEALSCSP 954 (1167)
Q Consensus 893 -G~s~aDL~~Lv~~A~~~A~~R~i~~~di~~~~e~~~~~~~~~~l~~i~It~~D~~~AL~~~~ 954 (1167)
....+.|++.+..+...+..+.+. .....+.|+..++..++....
T Consensus 297 ~~~~vR~L~~~i~~~~~~aa~~~~~-----------------~~~~~~~It~~~l~~~Lg~~~ 342 (543)
T 3m6a_A 297 REAGVRSLERQLAAICRKAAKAIVA-----------------EERKRITVTEKNLQDFIGKRI 342 (543)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHT-----------------TCCSCCEECTTTTHHHHCSCC
T ss_pred hhhchhHHHHHHHHHHHHHHHHHHh-----------------cCCcceecCHHHHHHHhCCcc
Confidence 345566665555444333221100 011235677888888887443
No 41
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.64 E-value=2.4e-15 Score=177.82 Aligned_cols=209 Identities=17% Similarity=0.203 Sum_probs=147.1
Q ss_pred ccCccccc-Ch--HHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 001066 682 FEGFESVA-GL--QDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG 758 (1167)
Q Consensus 682 ~~~~ddL~-Gl--e~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~ 758 (1167)
..+|++++ |. ......+..++..| + . ..++||+||||+|||+||++||+.+........++.+++
T Consensus 101 ~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 101 DYTFENFVVGPGNSFAYHAALEVAKHP----------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp TCSGGGCCCCTTTHHHHHHHHHHHHST----------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CCChhhcCCCCchHHHHHHHHHHHhCC----------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 34788877 53 33344444443321 1 1 568999999999999999999998854433456677777
Q ss_pred cccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCC
Q 001066 759 ADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPE 838 (1167)
Q Consensus 759 ~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d 838 (1167)
..+...+...........|.......+.||||||++.+..+. ..+..|+..|+.+...+..+||+|.+.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~---------~~q~~l~~~l~~l~~~~~~iIitt~~~~~ 239 (440)
T 2z4s_A 169 EKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT---------GVQTELFHTFNELHDSGKQIVICSDREPQ 239 (440)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH---------HHHHHHHHHHHHHHTTTCEEEEEESSCGG
T ss_pred HHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh---------HHHHHHHHHHHHHHHCCCeEEEEECCCHH
Confidence 666544433332222223333333378999999999987521 33456677776665566677776666666
Q ss_pred c---CCcccCCCCCcc--cccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHc
Q 001066 839 A---VDPALRRPGRFD--REIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKR 913 (1167)
Q Consensus 839 ~---Ld~aLlrpgRF~--~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R 913 (1167)
. ++++|++ ||. ..+.|++|+.++|.+||+..+...+..+++..+..|+..+.| +.+++..++..+..+|...
T Consensus 240 ~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~ 316 (440)
T 2z4s_A 240 KLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETT 316 (440)
T ss_dssp GCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh
Confidence 5 7788988 885 789999999999999999998776677788889999998875 7888999999888877544
Q ss_pred C
Q 001066 914 N 914 (1167)
Q Consensus 914 ~ 914 (1167)
+
T Consensus 317 ~ 317 (440)
T 2z4s_A 317 G 317 (440)
T ss_dssp S
T ss_pred C
Confidence 3
No 42
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.64 E-value=2.4e-15 Score=168.83 Aligned_cols=194 Identities=19% Similarity=0.213 Sum_probs=146.2
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
.+|++++|.+..++.+..++.... ..+ ..+.++||+||||||||++|+++|+.++ .+++.+++..+.
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~-------~~~-~~~~~vll~G~~GtGKT~la~~i~~~~~-----~~~~~~~~~~~~ 75 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAK-------ARK-EPLEHLLLFGPPGLGKTTLAHVIAHELG-----VNLRVTSGPAIE 75 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHH-------HHC-SCCCCCEEECCTTCCCHHHHHHHHHHHT-----CCEEEECTTTCC
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHH-------ccC-CCCCcEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEeccccC
Confidence 478999999999999988875421 001 2456899999999999999999999886 456666655432
Q ss_pred hhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc----------------CCC
Q 001066 763 GKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK----------------SRG 826 (1167)
Q Consensus 763 s~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~----------------~~~ 826 (1167)
. ...+...|..+ ...+.+||||||+.+.. ..+..|+..|+... ...
T Consensus 76 ~------~~~l~~~l~~~-~~~~~~l~lDEi~~l~~-----------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 76 K------PGDLAAILANS-LEEGDILFIDEIHRLSR-----------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp S------HHHHHHHHTTT-CCTTCEEEETTTTSCCH-----------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred C------hHHHHHHHHHh-ccCCCEEEEECCccccc-----------chHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 1 11222222221 24678999999998864 45566777776532 113
Q ss_pred ceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHH
Q 001066 827 SVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQA 906 (1167)
Q Consensus 827 ~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A 906 (1167)
.+++|++||.+..++++|.+ ||...+.|++|+.+++..++..++...+..+++..+..|+.++.| +++.+.+++..+
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~ 214 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRV 214 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 57899999999999999988 998899999999999999999999887777888899999999865 567888887776
Q ss_pred HHHH
Q 001066 907 AIIA 910 (1167)
Q Consensus 907 ~~~A 910 (1167)
...+
T Consensus 215 ~~~a 218 (324)
T 1hqc_A 215 RDFA 218 (324)
T ss_dssp TTTS
T ss_pred HHHH
Confidence 5544
No 43
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.63 E-value=1.1e-15 Score=175.79 Aligned_cols=220 Identities=20% Similarity=0.235 Sum_probs=149.8
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhc-cC-CCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchh-
Q 001066 688 VAGLQDVIRCMKEVVILPLLYPEFFDN-LG-LTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGK- 764 (1167)
Q Consensus 688 L~Gle~~k~~L~e~l~~pl~~~e~~~~-lg-l~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~- 764 (1167)
|+|++.+++.+...+............ .. ..++.++||+||||||||++|++||..++ .+|+.+++..+...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~-----~~~~~~~~~~l~~~~ 91 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD-----VPFTMADATTLTEAG 91 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHTTCH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC-----CCEEEechHHhcccc
Confidence 599999999999888543222111000 11 13567899999999999999999999986 67888888877643
Q ss_pred hhchH-HHHHHHHHHHH----HhcCCcEEEEcCCCCcCcccCccc---ccchHHHHHHHHHHhhccc-----------CC
Q 001066 765 YVGDA-ERQLRLLFQVA----EKCQPSIIFFDEIDGLAPCRTRQQ---DQTHSSVVSTLLALMDGLK-----------SR 825 (1167)
Q Consensus 765 ~~g~~-e~~L~~lF~~A----~~~~psILfIDEID~L~~~~~~~~---~~~~~~vl~~LL~lLd~l~-----------~~ 825 (1167)
|+|.. ...++.+|..+ ....++||||||||.+...+.... ......+++.|+.+|++.. ..
T Consensus 92 ~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~ 171 (363)
T 3hws_A 92 YVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQ 171 (363)
T ss_dssp HHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC--------------
T ss_pred cccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCC
Confidence 67765 55667777665 344678999999999987543321 1122348899999998421 01
Q ss_pred CceEEEccCCC--------C----------Cc-----------------------------------CCcccCCCCCccc
Q 001066 826 GSVVVIGATNR--------P----------EA-----------------------------------VDPALRRPGRFDR 852 (1167)
Q Consensus 826 ~~ViVIaTTN~--------~----------d~-----------------------------------Ld~aLlrpgRF~~ 852 (1167)
..+++|+|||. . .. +.+.|.+ ||+.
T Consensus 172 ~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~ 249 (363)
T 3hws_A 172 QEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPV 249 (363)
T ss_dssp --CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCE
T ss_pred CceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCe
Confidence 12345555554 1 01 5677777 9999
Q ss_pred ccccCCCCHHHHHHHHHH----hhc---------cCCCCCChhHHHHHHH--HccCCcHHHHHHHHHHHHHHHHHcC
Q 001066 853 EIYFPLPSMEDRAAILSL----HTE---------RWPKPVTGSLLKWIAA--RTAGFAGADLQALCTQAAIIALKRN 914 (1167)
Q Consensus 853 ~I~~~~P~~eER~eIL~~----~l~---------~~~~~l~d~~L~~LA~--~t~G~s~aDL~~Lv~~A~~~A~~R~ 914 (1167)
.+.|++|+.+++.+|+.. ++. .....+++..+..|+. ....+..+.|++++.++...++.+.
T Consensus 250 ~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 250 VATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDL 326 (363)
T ss_dssp EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHST
T ss_pred eeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhc
Confidence 999999999999999985 221 1223356778888886 3455667889888888887766543
No 44
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.62 E-value=1.4e-15 Score=181.17 Aligned_cols=190 Identities=23% Similarity=0.327 Sum_probs=136.5
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC-----CceEEEEec
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-----KRIAYFARK 757 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-----~~i~~~~l~ 757 (1167)
..|++|+|.+..++.+.+++.. ....++||+||||||||++|++||..+.... ....++.++
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 243 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 3688999999999999888754 3456899999999999999999999985432 235677776
Q ss_pred ccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCC
Q 001066 758 GADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRP 837 (1167)
Q Consensus 758 ~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~ 837 (1167)
+. +.|.|.++..++.+|..+....+.||||| .. .. ..+.|......+.++||++||.+
T Consensus 244 ~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~----------~~----a~~~L~~~L~~g~v~vI~at~~~ 301 (468)
T 3pxg_A 244 MG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA----------ID----ASNILKPSLARGELQCIGATTLD 301 (468)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------CCCTTSSSCEEEEECCTT
T ss_pred CC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc----------hh----HHHHHHHhhcCCCEEEEecCCHH
Confidence 66 67788888889999999998889999999 10 01 22333333346789999999988
Q ss_pred C-----cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhcc----CCCCCChhHHHHHHHHccCCc-----HHHHHHHH
Q 001066 838 E-----AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTER----WPKPVTGSLLKWIAARTAGFA-----GADLQALC 903 (1167)
Q Consensus 838 d-----~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~----~~~~l~d~~L~~LA~~t~G~s-----~aDL~~Lv 903 (1167)
+ .++++|.+ ||. .|.|+.|+.+++.+||+.++.. ....+++..+..++..+.+|. +.....++
T Consensus 302 e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll 378 (468)
T 3pxg_A 302 EYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLI 378 (468)
T ss_dssp TTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHH
T ss_pred HHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHH
Confidence 7 68999999 995 6999999999999999998876 455677778888887765554 33555666
Q ss_pred HHHHHHH
Q 001066 904 TQAAIIA 910 (1167)
Q Consensus 904 ~~A~~~A 910 (1167)
..|...+
T Consensus 379 ~~a~~~~ 385 (468)
T 3pxg_A 379 DEAGSKV 385 (468)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 45
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.62 E-value=5.9e-15 Score=166.59 Aligned_cols=199 Identities=14% Similarity=0.191 Sum_probs=141.6
Q ss_pred cCccccc-C--hHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 001066 683 EGFESVA-G--LQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA 759 (1167)
Q Consensus 683 ~~~ddL~-G--le~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~ 759 (1167)
.+|++++ | .......+..++..+ + ....++||+||||||||+||++|++.+... ...++.+++.
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~----------~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~ 74 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENL----------G-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSAD 74 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTT----------T-TSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHH
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCc----------C-CCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHH
Confidence 4677776 4 444555555555432 1 245789999999999999999999988543 2466677776
Q ss_pred ccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCC-
Q 001066 760 DCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPE- 838 (1167)
Q Consensus 760 ~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d- 838 (1167)
.+...+...........|..... .+.|||||||+.+.... ..+..|+..++.+...+..+||++++.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~---------~~~~~l~~~l~~~~~~~~~iii~~~~~~~~ 144 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE---------RTQIEFFHIFNTLYLLEKQIILASDRHPQK 144 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH---------HHHHHHHHHHHHHHHTTCEEEEEESSCGGG
T ss_pred HHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh---------HHHHHHHHHHHHHHHCCCeEEEEecCChHH
Confidence 66555544433322233333333 58999999999987421 23445666666555556677777777766
Q ss_pred --cCCcccCCCCCcc--cccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 001066 839 --AVDPALRRPGRFD--REIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAII 909 (1167)
Q Consensus 839 --~Ld~aLlrpgRF~--~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~ 909 (1167)
.++++|.+ ||. ..+.|++ +.+++.+||+.++...+..+++..+..|+..+ | +.+++.+++..+...
T Consensus 145 l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 145 LDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp CTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred HHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 57889988 885 5789999 99999999999998888888999999999999 5 667787777776654
No 46
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.60 E-value=8.6e-15 Score=155.80 Aligned_cols=193 Identities=15% Similarity=0.146 Sum_probs=134.1
Q ss_pred cCcccccC---hHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 001066 683 EGFESVAG---LQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA 759 (1167)
Q Consensus 683 ~~~ddL~G---le~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~ 759 (1167)
.+|++++| ...++..+..++.. ....++||+||||||||++|++++..+..... .++.+++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~--~~~~~~~~ 89 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELER--RSFYIPLG 89 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEEEGG
T ss_pred CChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC--eEEEEEHH
Confidence 47788886 24666666665533 24578999999999999999999999875533 34444444
Q ss_pred ccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCce-EEEccCCCCC
Q 001066 760 DCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSV-VVIGATNRPE 838 (1167)
Q Consensus 760 ~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~V-iVIaTTN~~d 838 (1167)
.+...+.. ++. ....+.+|||||++.+... ......|+.+++.....+.+ +|++++..+.
T Consensus 90 ~~~~~~~~--------~~~--~~~~~~vliiDe~~~~~~~---------~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~ 150 (242)
T 3bos_A 90 IHASISTA--------LLE--GLEQFDLICIDDVDAVAGH---------PLWEEAIFDLYNRVAEQKRGSLIVSASASPM 150 (242)
T ss_dssp GGGGSCGG--------GGT--TGGGSSEEEEETGGGGTTC---------HHHHHHHHHHHHHHHHHCSCEEEEEESSCTT
T ss_pred HHHHHHHH--------HHH--hccCCCEEEEeccccccCC---------HHHHHHHHHHHHHHHHcCCCeEEEEcCCCHH
Confidence 44332211 111 1145789999999988641 12244566666655444444 5554444443
Q ss_pred ---cCCcccCCCCCcc--cccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 001066 839 ---AVDPALRRPGRFD--REIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALK 912 (1167)
Q Consensus 839 ---~Ld~aLlrpgRF~--~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~ 912 (1167)
.+.+.+.+ ||. ..+.|++|+.+++.+||..++...+..+++..+..|+..+.| +.+.+.+++..+..+|..
T Consensus 151 ~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~ 226 (242)
T 3bos_A 151 EAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMV 226 (242)
T ss_dssp TTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH
Confidence 34577777 775 789999999999999999998877777888899999998865 778888888888777643
No 47
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.59 E-value=8.9e-15 Score=154.22 Aligned_cols=190 Identities=18% Similarity=0.198 Sum_probs=139.0
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCc------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKR------------ 750 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~------------ 750 (1167)
..|++++|.+..++.|...+... ..+..++|+||||+|||++|++++..+......
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 87 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 46788999999999999887541 224579999999999999999999988643210
Q ss_pred -------eEEEEecccccchhhhchHHHHHHHHHHHHH----hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHh
Q 001066 751 -------IAYFARKGADCLGKYVGDAERQLRLLFQVAE----KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALM 819 (1167)
Q Consensus 751 -------i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~----~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lL 819 (1167)
..++.+.... ......+..++..+. ...+.+|||||+|.+.. ..+..|+..|
T Consensus 88 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~-----------~~~~~l~~~l 150 (250)
T 1njg_A 88 EIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALLKTL 150 (250)
T ss_dssp HHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-----------HHHHHHHHHH
T ss_pred HHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH-----------HHHHHHHHHH
Confidence 0112211110 111233444444332 23478999999998753 4566777777
Q ss_pred hcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHH
Q 001066 820 DGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADL 899 (1167)
Q Consensus 820 d~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL 899 (1167)
+.. ...+++|++|+.+..+++.+.+ |+ ..|.|++|+.++..+++..++...+..+++..+..|+..+.| +++.+
T Consensus 151 ~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~ 224 (250)
T 1njg_A 151 EEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDA 224 (250)
T ss_dssp HSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHH
T ss_pred hcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 643 3467888889988888888887 76 789999999999999999998877777788889999999976 78888
Q ss_pred HHHHHHHH
Q 001066 900 QALCTQAA 907 (1167)
Q Consensus 900 ~~Lv~~A~ 907 (1167)
.+++..|.
T Consensus 225 ~~~~~~~~ 232 (250)
T 1njg_A 225 LSLTDQAI 232 (250)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
No 48
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.59 E-value=9.7e-15 Score=172.98 Aligned_cols=185 Identities=21% Similarity=0.246 Sum_probs=134.9
Q ss_pred cCcccccChHHHH---HHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 001066 683 EGFESVAGLQDVI---RCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA 759 (1167)
Q Consensus 683 ~~~ddL~Gle~~k---~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~ 759 (1167)
.+|++++|.+.++ ..|...+.. ....++||+||||||||++|++||+.+. ..|+.+++.
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~-------------~~~~~vLL~GppGtGKTtlAr~ia~~~~-----~~f~~l~a~ 84 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEA-------------GHLHSMILWGPPGTGKTTLAEVIARYAN-----ADVERISAV 84 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHH-------------TCCCEEEEECSTTSSHHHHHHHHHHHTT-----CEEEEEETT
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHc-------------CCCcEEEEECCCCCcHHHHHHHHHHHhC-----CCeEEEEec
Confidence 4789999999999 677777654 1226899999999999999999999886 466666543
Q ss_pred ccchhhhchHHHHHHHHHHHHH----hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccC-
Q 001066 760 DCLGKYVGDAERQLRLLFQVAE----KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGAT- 834 (1167)
Q Consensus 760 ~lls~~~g~~e~~L~~lF~~A~----~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTT- 834 (1167)
... ...++.+|..+. ...+.||||||||.+.. ..+..|+..|+. +.++||++|
T Consensus 85 ~~~-------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~-----------~~q~~LL~~le~----~~v~lI~att 142 (447)
T 3pvs_A 85 TSG-------VKEIREAIERARQNRNAGRRTILFVDEVHRFNK-----------SQQDAFLPHIED----GTITFIGATT 142 (447)
T ss_dssp TCC-------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT----TSCEEEEEES
T ss_pred cCC-------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH-----------HHHHHHHHHHhc----CceEEEecCC
Confidence 221 223444444443 34689999999999865 234457777764 557777766
Q ss_pred -CCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhcc-------CCCCCChhHHHHHHHHccCCcHHHHHHHHHHH
Q 001066 835 -NRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTER-------WPKPVTGSLLKWIAARTAGFAGADLQALCTQA 906 (1167)
Q Consensus 835 -N~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~-------~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A 906 (1167)
|....++++|++ |+ ..+.|++|+.+++..||...+.. ....+++..+..|+..+.| ..+.+.+++..+
T Consensus 143 ~n~~~~l~~aL~s--R~-~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a 218 (447)
T 3pvs_A 143 ENPSFELNSALLS--RA-RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMM 218 (447)
T ss_dssp SCGGGSSCHHHHT--TE-EEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred CCcccccCHHHhC--ce-eEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 444578999998 88 57889999999999999998876 3345788899999999765 666777788887
Q ss_pred HHHHH
Q 001066 907 AIIAL 911 (1167)
Q Consensus 907 ~~~A~ 911 (1167)
...+.
T Consensus 219 ~~~a~ 223 (447)
T 3pvs_A 219 ADMAE 223 (447)
T ss_dssp HHHSC
T ss_pred HHhcc
Confidence 77654
No 49
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.58 E-value=2.6e-14 Score=163.01 Aligned_cols=211 Identities=23% Similarity=0.250 Sum_probs=143.3
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcC----CCceEEEEecccc
Q 001066 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARG----DKRIAYFARKGAD 760 (1167)
Q Consensus 685 ~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~----~~~i~~~~l~~~~ 760 (1167)
.++++|.+..++.+..++...+ ....+.+++|+||||||||++|++++..+... .....++.+++..
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~---------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPAL---------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGT---------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHH---------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 3678999999999988764321 11345789999999999999999999987431 1136777776654
Q ss_pred cchhh----------------hch-HHHHHHHHHHHHHhc-CCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcc
Q 001066 761 CLGKY----------------VGD-AERQLRLLFQVAEKC-QPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGL 822 (1167)
Q Consensus 761 lls~~----------------~g~-~e~~L~~lF~~A~~~-~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l 822 (1167)
....+ .+. ....+..++..+... .+.||||||+|.+.... ....++..++..+...
T Consensus 89 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~~~~~ 162 (387)
T 2v1u_A 89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRINQEL 162 (387)
T ss_dssp SCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHHHHHHHHHGGGCC
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCChHHHhHhhchhhc
Confidence 32111 011 223344444444332 47799999999886421 1224444455444433
Q ss_pred cCCCceEEEccCCCC---CcCCcccCCCCCccc-ccccCCCCHHHHHHHHHHhhcc--CCCCCChhHHHHHHHHcc---C
Q 001066 823 KSRGSVVVIGATNRP---EAVDPALRRPGRFDR-EIYFPLPSMEDRAAILSLHTER--WPKPVTGSLLKWIAARTA---G 893 (1167)
Q Consensus 823 ~~~~~ViVIaTTN~~---d~Ld~aLlrpgRF~~-~I~~~~P~~eER~eIL~~~l~~--~~~~l~d~~L~~LA~~t~---G 893 (1167)
....++++|++||.+ ..+++.+.+ ||.. .|.|++|+.+++.+||...+.. ....+++..+..++..+. |
T Consensus 163 ~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G 240 (387)
T 2v1u_A 163 GDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHG 240 (387)
T ss_dssp -----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSC
T ss_pred CCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcc
Confidence 214578889999887 678888988 8875 8999999999999999988764 345567788899999887 6
Q ss_pred CcHHHHHHHHHHHHHHHHHc
Q 001066 894 FAGADLQALCTQAAIIALKR 913 (1167)
Q Consensus 894 ~s~aDL~~Lv~~A~~~A~~R 913 (1167)
.++.+.+++..|...|..+
T Consensus 241 -~~r~~~~~l~~a~~~a~~~ 259 (387)
T 2v1u_A 241 -DARRALDLLRVAGEIAERR 259 (387)
T ss_dssp -CHHHHHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHHHHHc
Confidence 5666778888888877654
No 50
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.58 E-value=4.9e-16 Score=182.90 Aligned_cols=169 Identities=19% Similarity=0.220 Sum_probs=82.0
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhccCC-CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccch-h
Q 001066 687 SVAGLQDVIRCMKEVVILPLLYPEFFDNLGL-TPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLG-K 764 (1167)
Q Consensus 687 dL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl-~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls-~ 764 (1167)
.|+|++++++.|..++..+..++..+..+.. .++.++||+||||||||++|+++|..++ .+|+.+++..+.. .
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~-----~~~~~v~~~~~~~~g 90 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKFTEVG 90 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEGGGGC---
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC-----CCceeecchhhcccc
Confidence 5799999999999999887766666554443 2567899999999999999999999987 6888888888777 4
Q ss_pred hhch-HHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEcc-CCCCCcCCc
Q 001066 765 YVGD-AERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGA-TNRPEAVDP 842 (1167)
Q Consensus 765 ~~g~-~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaT-TN~~d~Ld~ 842 (1167)
|+|. .+..++.+|..+.. ++++||++.+... .......+++..|+..|+++.....+ +++ ||+++.|++
T Consensus 91 ~vG~d~e~~lr~lf~~a~~----~~~~De~d~~~~~---~~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~ 161 (444)
T 1g41_A 91 YVGKEVDSIIRDLTDSAMK----LVRQQEIAKNRAR---AEDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRK 161 (444)
T ss_dssp -CCCCTHHHHHHHHHHHHH----HHHHHHHHSCC----------------------------------------------
T ss_pred eeeccHHHHHHHHHHHHHh----cchhhhhhhhhcc---chhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHH
Confidence 8884 78899999998876 3458998877542 23345568999999999998665554 455 999999999
Q ss_pred ccCCCCCcccccccCCCCHH-HHHHHHH
Q 001066 843 ALRRPGRFDREIYFPLPSME-DRAAILS 869 (1167)
Q Consensus 843 aLlrpgRF~~~I~~~~P~~e-ER~eIL~ 869 (1167)
+|++++||+..|+|+.|+.. .|.+||.
T Consensus 162 aL~rggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 162 KLREGQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp ----------------------------
T ss_pred HHHcCCCcceEEEEcCCCCccchhhhhc
Confidence 99999999999999999987 7888874
No 51
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.58 E-value=3.5e-15 Score=152.18 Aligned_cols=163 Identities=29% Similarity=0.420 Sum_probs=116.1
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC-----CceEEEEec
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-----KRIAYFARK 757 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-----~~i~~~~l~ 757 (1167)
..|++++|.++.++.+.+.+.. ..+.++||+||||||||++|++++..+.... ....++.++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred ccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 3578899999999988887633 3356899999999999999999999875321 135667777
Q ss_pred ccccc--hhhhchHHHHHHHHHHHHHh-cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccC
Q 001066 758 GADCL--GKYVGDAERQLRLLFQVAEK-CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGAT 834 (1167)
Q Consensus 758 ~~~ll--s~~~g~~e~~L~~lF~~A~~-~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTT 834 (1167)
+..+. ..+.+.....+..++..+.. ..+.||||||+|.+........... +...|..+++ ..++.+|++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~---~~~~l~~~~~----~~~~~~i~~~ 158 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMD---AGNMLKPALA----RGELHCVGAT 158 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCC---CHHHHHHHHH----TTSCCEEEEE
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHH---HHHHHHHhhc----cCCeEEEEeC
Confidence 66655 34556666777888876644 4577999999999975432211111 2223333332 4567888888
Q ss_pred CCCC-----cCCcccCCCCCcccccccCCCCHHHHHHHH
Q 001066 835 NRPE-----AVDPALRRPGRFDREIYFPLPSMEDRAAIL 868 (1167)
Q Consensus 835 N~~d-----~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL 868 (1167)
+.+. .+++++++ ||. .|.|++|+.+++.+||
T Consensus 159 ~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 159 TLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 8876 68899998 996 7999999999998876
No 52
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.57 E-value=1.4e-14 Score=164.09 Aligned_cols=206 Identities=19% Similarity=0.214 Sum_probs=131.2
Q ss_pred cccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcC----CCce-----
Q 001066 681 LFEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARG----DKRI----- 751 (1167)
Q Consensus 681 ~~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~----~~~i----- 751 (1167)
+..+|++++|.+.+++.+...+.. ....++||+||||||||++|+++|..+... ...+
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 345799999999987765444322 123469999999999999999999987531 0000
Q ss_pred -------------------EEEEecccccchhhhchHHHHHHHHHHHH---------HhcCCcEEEEcCCCCcCcccCcc
Q 001066 752 -------------------AYFARKGADCLGKYVGDAERQLRLLFQVA---------EKCQPSIIFFDEIDGLAPCRTRQ 803 (1167)
Q Consensus 752 -------------------~~~~l~~~~lls~~~g~~e~~L~~lF~~A---------~~~~psILfIDEID~L~~~~~~~ 803 (1167)
+++.+........+++... +...+..+ ....++|||||||+.+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~----- 158 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLLED----- 158 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH-----
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhCCH-----
Confidence 1111111000011111100 01111111 112468999999998865
Q ss_pred cccchHHHHHHHHHHhhcc----cC-------CCceEEEccCCCCC-cCCcccCCCCCcccccccCCC-CHHHHHHHHHH
Q 001066 804 QDQTHSSVVSTLLALMDGL----KS-------RGSVVVIGATNRPE-AVDPALRRPGRFDREIYFPLP-SMEDRAAILSL 870 (1167)
Q Consensus 804 ~~~~~~~vl~~LL~lLd~l----~~-------~~~ViVIaTTN~~d-~Ld~aLlrpgRF~~~I~~~~P-~~eER~eIL~~ 870 (1167)
.++..|+..|+.. .. ...++||+|||... .++++|++ ||...+.|+.| +.+++.+|++.
T Consensus 159 ------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 159 ------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp ------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHH
T ss_pred ------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 5667788777641 11 13689999999744 78999999 99888999998 67777788865
Q ss_pred hh-----------------------------ccCCCCCChhHHHHHHHHccCC---cHHHHHHHHHHHHHHHHHcC
Q 001066 871 HT-----------------------------ERWPKPVTGSLLKWIAARTAGF---AGADLQALCTQAAIIALKRN 914 (1167)
Q Consensus 871 ~l-----------------------------~~~~~~l~d~~L~~LA~~t~G~---s~aDL~~Lv~~A~~~A~~R~ 914 (1167)
.+ ......+++..+..|+....+. +.+.+.++++.|...|..++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~ 306 (350)
T 1g8p_A 231 RDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEG 306 (350)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC
Confidence 21 1112356777888888776542 46888888888888776544
No 53
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.56 E-value=1.6e-14 Score=161.05 Aligned_cols=207 Identities=20% Similarity=0.275 Sum_probs=143.6
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchh--
Q 001066 687 SVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGK-- 764 (1167)
Q Consensus 687 dL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~-- 764 (1167)
.++|.+.+++.+...+...... ... ...+..++||+||||||||++|++||..+.... .+++.+++..+...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~---~~~-~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~--~~~~~~~~~~~~~~~~ 91 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAG---LKD-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE--EAMIRIDMTEYMEKHA 91 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHT---CSC-TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCG--GGEEEEEGGGCCSTTH
T ss_pred hcCCHHHHHHHHHHHHHHHhcC---CCC-CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCC--cceEEeeccccccccc
Confidence 4689999999998887653110 000 112334799999999999999999999986432 34556655544321
Q ss_pred ---hhchHH----HH-HHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccC---------CCc
Q 001066 765 ---YVGDAE----RQ-LRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKS---------RGS 827 (1167)
Q Consensus 765 ---~~g~~e----~~-L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~---------~~~ 827 (1167)
++|... .. ...+.........+|||||||+.+.. .++..|+.+|+.... ..+
T Consensus 92 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~le~~~~~~~~~~~~~~~~ 160 (311)
T 4fcw_A 92 VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP-----------DVFNILLQMLDDGRLTDSHGRTVDFRN 160 (311)
T ss_dssp HHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEEECTTSCEEECTT
T ss_pred HHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH-----------HHHHHHHHHHhcCEEEcCCCCEEECCC
Confidence 111000 00 01222333344568999999998864 677888888875321 135
Q ss_pred eEEEccCCC--------------------------CCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccC------
Q 001066 828 VVVIGATNR--------------------------PEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERW------ 875 (1167)
Q Consensus 828 ViVIaTTN~--------------------------~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~------ 875 (1167)
++||+|||. ...++++|.+ ||+..+.|++|+.+++..|++.++..+
T Consensus 161 ~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~ 238 (311)
T 4fcw_A 161 TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAE 238 (311)
T ss_dssp EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHT
T ss_pred cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 779999998 4467888887 999999999999999999999876542
Q ss_pred ---CCCCChhHHHHHHHHcc--CCcHHHHHHHHHHHHHHHHH
Q 001066 876 ---PKPVTGSLLKWIAARTA--GFAGADLQALCTQAAIIALK 912 (1167)
Q Consensus 876 ---~~~l~d~~L~~LA~~t~--G~s~aDL~~Lv~~A~~~A~~ 912 (1167)
...+++..+..|+.+.. .++.++|++++.++...+..
T Consensus 239 ~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~ 280 (311)
T 4fcw_A 239 KRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLA 280 (311)
T ss_dssp TTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHH
T ss_pred CCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHH
Confidence 34467888999999876 67889999999988776554
No 54
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.55 E-value=3.6e-14 Score=159.91 Aligned_cols=179 Identities=18% Similarity=0.218 Sum_probs=132.5
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
.+|++++|.+.+++.+..++.. + ..+..+|++||||||||++|+++|+.++ ..++.+++....
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~-----------~-~~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~~~ 85 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSK-----------G-KIPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSDCK 85 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHT-----------T-CCCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTTCC
T ss_pred CCHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEcccccC
Confidence 4799999999999999988763 1 3345678889999999999999999986 677777765422
Q ss_pred hhhhchHHHHHHHHHHHHHhc-----CCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCC
Q 001066 763 GKYVGDAERQLRLLFQVAEKC-----QPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRP 837 (1167)
Q Consensus 763 s~~~g~~e~~L~~lF~~A~~~-----~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~ 837 (1167)
...++..+...... .+.||||||+|.+.+ ...+..|+..|+... ..+.||++||.+
T Consensus 86 -------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~~~L~~~le~~~--~~~~iI~~~n~~ 146 (324)
T 3u61_B 86 -------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQRHLRSFMEAYS--SNCSIIITANNI 146 (324)
T ss_dssp -------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHHHHHHHHHHHHG--GGCEEEEEESSG
T ss_pred -------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHHHHHHHHHHhCC--CCcEEEEEeCCc
Confidence 23334434333222 568999999999862 145667888777643 457788899999
Q ss_pred CcCCcccCCCCCcccccccCCCCHHHHHHHHHHhh-------ccCCCCCCh-hHHHHHHHHccCCcHHHHH
Q 001066 838 EAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHT-------ERWPKPVTG-SLLKWIAARTAGFAGADLQ 900 (1167)
Q Consensus 838 d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l-------~~~~~~l~d-~~L~~LA~~t~G~s~aDL~ 900 (1167)
..++++|++ || ..+.|++|+.+++.+|++.++ ...+..+++ ..+..|+..+.|.....+.
T Consensus 147 ~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 147 DGIIKPLQS--RC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp GGSCTTHHH--HS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHH
T ss_pred cccCHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHH
Confidence 999999998 99 579999999999776655433 334556677 8889999988775555443
No 55
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.55 E-value=2.6e-14 Score=162.00 Aligned_cols=201 Identities=10% Similarity=0.115 Sum_probs=139.9
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC-----CceEEEEecccccc
Q 001066 688 VAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-----KRIAYFARKGADCL 762 (1167)
Q Consensus 688 L~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-----~~i~~~~l~~~~ll 762 (1167)
|.|.++.+..|...+...+ .-..+.++||+||||||||+++++++.++.... ..+.++.+++..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i---------~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSL---------MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHh---------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 5777888888877765422 124578899999999999999999999986421 24678888876644
Q ss_pred hhh----------------hchHHHHHHHHHHHH--HhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccC
Q 001066 763 GKY----------------VGDAERQLRLLFQVA--EKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKS 824 (1167)
Q Consensus 763 s~~----------------~g~~e~~L~~lF~~A--~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~ 824 (1167)
+.+ .+.....+..+|... ....+.||||||||.|.. ..++..|+++.. ..
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~----------q~~L~~l~~~~~--~~ 160 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLS----------EKILQYFEKWIS--SK 160 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCC----------THHHHHHHHHHH--CS
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhc----------chHHHHHHhccc--cc
Confidence 321 122345567777764 345678999999999971 255666665443 24
Q ss_pred CCceEEEccCCCCCc----CCcccCCCCCcc-cccccCCCCHHHHHHHHHHhhccCCC----------------------
Q 001066 825 RGSVVVIGATNRPEA----VDPALRRPGRFD-REIYFPLPSMEDRAAILSLHTERWPK---------------------- 877 (1167)
Q Consensus 825 ~~~ViVIaTTN~~d~----Ld~aLlrpgRF~-~~I~~~~P~~eER~eIL~~~l~~~~~---------------------- 877 (1167)
..+++||+++|..+. |++++++ ||. ..|.|++|+.++..+||+..+.....
T Consensus 161 ~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~ 238 (318)
T 3te6_A 161 NSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQ 238 (318)
T ss_dssp SCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC----
T ss_pred CCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccc
Confidence 567899999988753 4566776 785 67999999999999999988765321
Q ss_pred -------------CCChhHHHHHHHH---ccCCcHHHHHHHHHHHHHHHHH
Q 001066 878 -------------PVTGSLLKWIAAR---TAGFAGADLQALCTQAAIIALK 912 (1167)
Q Consensus 878 -------------~l~d~~L~~LA~~---t~G~s~aDL~~Lv~~A~~~A~~ 912 (1167)
.+++..+..+|+. ..|....+| ++|++|...|..
T Consensus 239 ~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al-~ilr~A~~~ae~ 288 (318)
T 3te6_A 239 NQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAF-KICEAAVEISKK 288 (318)
T ss_dssp ----CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHH-HHHHHHHHHHHH
T ss_pred cccccccccccccccCHHHHHHHHHHHHhhCChHHHHH-HHHHHHHHHHHH
Confidence 2467788888885 345444443 556777776654
No 56
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.53 E-value=5.4e-14 Score=162.21 Aligned_cols=219 Identities=22% Similarity=0.252 Sum_probs=138.4
Q ss_pred cccChHHHHHHHHHHHHccccChhh------------------hhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC
Q 001066 687 SVAGLQDVIRCMKEVVILPLLYPEF------------------FDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD 748 (1167)
Q Consensus 687 dL~Gle~~k~~L~e~l~~pl~~~e~------------------~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~ 748 (1167)
.|+|++.+++.|..++..++..... ... ...+..++||+||||||||++|++||..++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~-~~~~~~~ill~Gp~GtGKT~la~~la~~l~--- 97 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEE-VELSKSNILLIGPTGSGKTLMAQTLAKHLD--- 97 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH-TTCCCCCEEEECCTTSSHHHHHHHHHHHTT---
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccc-cccCCCCEEEECCCCCCHHHHHHHHHHHhC---
Confidence 3799999999999887533222211 011 123467899999999999999999999886
Q ss_pred CceEEEEecccccc-hhhhchH-HHHHHHHHHHH----HhcCCcEEEEcCCCCcCcccCcc---cccchHHHHHHHHHHh
Q 001066 749 KRIAYFARKGADCL-GKYVGDA-ERQLRLLFQVA----EKCQPSIIFFDEIDGLAPCRTRQ---QDQTHSSVVSTLLALM 819 (1167)
Q Consensus 749 ~~i~~~~l~~~~ll-s~~~g~~-e~~L~~lF~~A----~~~~psILfIDEID~L~~~~~~~---~~~~~~~vl~~LL~lL 819 (1167)
.+|+.+++..+. ..|.+.. ...+..++..+ ....++|||||||+.+...+... .+.....++..|+.+|
T Consensus 98 --~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~l 175 (376)
T 1um8_A 98 --IPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIV 175 (376)
T ss_dssp --CCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHH
T ss_pred --CCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHh
Confidence 567777766654 3344432 34455555432 23467999999999998642211 1112234788899999
Q ss_pred hccc-------------------CCCceEEEccCCCC-----------------------------------------Cc
Q 001066 820 DGLK-------------------SRGSVVVIGATNRP-----------------------------------------EA 839 (1167)
Q Consensus 820 d~l~-------------------~~~~ViVIaTTN~~-----------------------------------------d~ 839 (1167)
+... ...++++|+++|.. ..
T Consensus 176 e~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 255 (376)
T 1um8_A 176 EGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYG 255 (376)
T ss_dssp HCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTT
T ss_pred hccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcC
Confidence 8531 12456777776620 12
Q ss_pred CCcccCCCCCcccccccCCCCHHHHHHHHHH----hh---------ccCCCCCChhHHHHHHHHcc--CCcHHHHHHHHH
Q 001066 840 VDPALRRPGRFDREIYFPLPSMEDRAAILSL----HT---------ERWPKPVTGSLLKWIAARTA--GFAGADLQALCT 904 (1167)
Q Consensus 840 Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~----~l---------~~~~~~l~d~~L~~LA~~t~--G~s~aDL~~Lv~ 904 (1167)
+.+.|.+ ||+..|.|++++.++...|+.. ++ ......+++..+..|+.+.. ....+.|.+++.
T Consensus 256 ~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le 333 (376)
T 1um8_A 256 LIPELIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIE 333 (376)
T ss_dssp CCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHH
T ss_pred CChHHhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHH
Confidence 4566666 8888899999999999999962 11 11234467788888888754 246788888888
Q ss_pred HHHHHHHHc
Q 001066 905 QAAIIALKR 913 (1167)
Q Consensus 905 ~A~~~A~~R 913 (1167)
++...++.+
T Consensus 334 ~~~~~~~~~ 342 (376)
T 1um8_A 334 DFCLDIMFD 342 (376)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 877765543
No 57
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.52 E-value=6.2e-14 Score=160.62 Aligned_cols=200 Identities=20% Similarity=0.200 Sum_probs=136.4
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC-----C-ceEEEEeccc
Q 001066 686 ESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-----K-RIAYFARKGA 759 (1167)
Q Consensus 686 ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-----~-~i~~~~l~~~ 759 (1167)
++++|.++.++.+..++...+. -..+.+++|+||||||||++|++++..+.... . ...++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 6789999999999988754221 13456899999999999999999999873320 1 3567777654
Q ss_pred ccc-h------hhhc-----------h-HHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHH-HHHHHHHh
Q 001066 760 DCL-G------KYVG-----------D-AERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSV-VSTLLALM 819 (1167)
Q Consensus 760 ~ll-s------~~~g-----------~-~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~v-l~~LL~lL 819 (1167)
... . .... . ....+..++..+....+ ||||||+|.+.... ...+ +..|+..+
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~-------~~~~~l~~l~~~~ 162 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRR-------GGDIVLYQLLRSD 162 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHST-------TSHHHHHHHHTSS
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCC-------CCceeHHHHhcCC
Confidence 432 1 0010 0 12334444444433333 99999999886421 0122 33333222
Q ss_pred hcccCCCceEEEccCCCC---CcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhcc--CCCCCChhHHHHHHHHcc--
Q 001066 820 DGLKSRGSVVVIGATNRP---EAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTER--WPKPVTGSLLKWIAARTA-- 892 (1167)
Q Consensus 820 d~l~~~~~ViVIaTTN~~---d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~--~~~~l~d~~L~~LA~~t~-- 892 (1167)
.++.||++||.+ ..+++.+.+ ||...|.|++|+.+++.+||..++.. ....+++..+..++..+.
T Consensus 163 ------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 234 (384)
T 2qby_B 163 ------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKE 234 (384)
T ss_dssp ------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTT
T ss_pred ------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhc
Confidence 678888899886 578888887 88779999999999999999998763 234567788888999887
Q ss_pred -CCcHHHHHHHHHHHHHHHH
Q 001066 893 -GFAGADLQALCTQAAIIAL 911 (1167)
Q Consensus 893 -G~s~aDL~~Lv~~A~~~A~ 911 (1167)
| .++.+.+++..|...|.
T Consensus 235 ~G-~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 235 HG-DARKAVNLLFRAAQLAS 253 (384)
T ss_dssp CC-CHHHHHHHHHHHHHHTT
T ss_pred cC-CHHHHHHHHHHHHHHhc
Confidence 4 44556677777776664
No 58
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.51 E-value=2.7e-13 Score=153.37 Aligned_cols=152 Identities=22% Similarity=0.244 Sum_probs=105.2
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc-----
Q 001066 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA----- 759 (1167)
Q Consensus 685 ~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~----- 759 (1167)
+++++|.+.+++.+...+.. ..++||+||||||||++|+++|..++. +++.+.+.
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~-----~~~~i~~~~~~~~ 85 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDL-----DFHRIQFTPDLLP 85 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTC-----CEEEEECCTTCCH
T ss_pred ccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCC-----CeEEEecCCCCCh
Confidence 35679999999888776643 258999999999999999999998863 34433331
Q ss_pred -ccchhhhchHHHHHHHHHHHHHhcC---CcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcc---------cCCC
Q 001066 760 -DCLGKYVGDAERQLRLLFQVAEKCQ---PSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGL---------KSRG 826 (1167)
Q Consensus 760 -~lls~~~g~~e~~L~~lF~~A~~~~---psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l---------~~~~ 826 (1167)
++.+....... ...|. .... .+|||||||+.+.. .++..|+..|+.. ....
T Consensus 86 ~~l~g~~~~~~~---~~~~~--~~~g~l~~~vl~iDEi~~~~~-----------~~~~~Ll~~l~~~~~~~~g~~~~~~~ 149 (331)
T 2r44_A 86 SDLIGTMIYNQH---KGNFE--VKKGPVFSNFILADEVNRSPA-----------KVQSALLECMQEKQVTIGDTTYPLDN 149 (331)
T ss_dssp HHHHEEEEEETT---TTEEE--EEECTTCSSEEEEETGGGSCH-----------HHHHHHHHHHHHSEEEETTEEEECCS
T ss_pred hhcCCceeecCC---CCceE--eccCcccccEEEEEccccCCH-----------HHHHHHHHHHhcCceeeCCEEEECCC
Confidence 11111100000 00000 0011 37999999998764 5667788877742 2244
Q ss_pred ceEEEccCCCCC-----cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhcc
Q 001066 827 SVVVIGATNRPE-----AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTER 874 (1167)
Q Consensus 827 ~ViVIaTTN~~d-----~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~ 874 (1167)
.++||+|+|..+ .++++|++ ||...+.|+.|+.+++.+||+..+..
T Consensus 150 ~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 150 PFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp SCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 688888888543 38899998 99878999999999999999988764
No 59
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=1.3e-13 Score=153.88 Aligned_cols=188 Identities=17% Similarity=0.139 Sum_probs=136.8
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
..|++++|.+..++.|..++.. + .. .++||+||||+|||++|+++|..+........++.+++.+..
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~-----------~-~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 84 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKD-----------G-NM-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR 84 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHS-----------C-CC-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC
T ss_pred CCHHHHHCCHHHHHHHHHHHHc-----------C-CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc
Confidence 4688999999999999988754 1 22 249999999999999999999987433223456666655432
Q ss_pred hhhhchHHHHHHHHHHHHH-------hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCC
Q 001066 763 GKYVGDAERQLRLLFQVAE-------KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATN 835 (1167)
Q Consensus 763 s~~~g~~e~~L~~lF~~A~-------~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN 835 (1167)
+ ...++.++.... ...+.||||||+|.+.. ..+..|+..++.. ...+++|.+|+
T Consensus 85 ~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~--~~~~~~il~~~ 145 (323)
T 1sxj_B 85 G------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA-----------GAQQALRRTMELY--SNSTRFAFACN 145 (323)
T ss_dssp S------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH-----------HHHHTTHHHHHHT--TTTEEEEEEES
T ss_pred C------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH-----------HHHHHHHHHHhcc--CCCceEEEEeC
Confidence 1 233444444433 22478999999998864 3455677777653 34567777888
Q ss_pred CCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHH
Q 001066 836 RPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQA 906 (1167)
Q Consensus 836 ~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A 906 (1167)
.+..+.+.+.+ |+ ..+.|++|+.+++.++|..++...+..+++..+..|+..+.|.....+ +++..+
T Consensus 146 ~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~-~~l~~~ 212 (323)
T 1sxj_B 146 QSNKIIEPLQS--QC-AILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAI-NNLQST 212 (323)
T ss_dssp CGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHH-HHHHHH
T ss_pred ChhhchhHHHh--hc-eEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH-HHHHHH
Confidence 88899999988 88 589999999999999999988766666788889999998877544444 333433
No 60
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=1.1e-13 Score=156.78 Aligned_cols=197 Identities=17% Similarity=0.140 Sum_probs=136.1
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcC-CCceEEEEeccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARG-DKRIAYFARKGADC 761 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~-~~~i~~~~l~~~~l 761 (1167)
..|++++|.+++++.|...+.. ....++||+||||||||++|+++|..+... .....++.+++.+.
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 100 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE 100 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSC
T ss_pred CCHHHhhCCHHHHHHHHHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccc
Confidence 4688999999999988887643 112359999999999999999999987521 11234555555443
Q ss_pred chhhhchHHHHHHHHHHH-----------HH-hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceE
Q 001066 762 LGKYVGDAERQLRLLFQV-----------AE-KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVV 829 (1167)
Q Consensus 762 ls~~~g~~e~~L~~lF~~-----------A~-~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~Vi 829 (1167)
.+ .......+...... .. ...+.||||||+|.+.. ..+..|+..|+.... ...
T Consensus 101 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~-----------~~~~~Ll~~le~~~~--~~~ 165 (353)
T 1sxj_D 101 RG--ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA-----------DAQSALRRTMETYSG--VTR 165 (353)
T ss_dssp CC--HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH-----------HHHHHHHHHHHHTTT--TEE
T ss_pred cc--hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH-----------HHHHHHHHHHHhcCC--Cce
Confidence 21 11111111111100 00 12346999999998864 455678888876533 455
Q ss_pred EEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 001066 830 VIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAII 909 (1167)
Q Consensus 830 VIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~ 909 (1167)
+|.+||.+..+.+++++ |+ ..+.|++|+.++...+|...+...+..+++..+..|+..+.|. .+.+.+++..+..+
T Consensus 166 ~il~~~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~-~r~~~~~l~~~~~~ 241 (353)
T 1sxj_D 166 FCLICNYVTRIIDPLAS--QC-SKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGD-LRRGITLLQSASKG 241 (353)
T ss_dssp EEEEESCGGGSCHHHHH--HS-EEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC-HHHHHHHHHHTHHH
T ss_pred EEEEeCchhhCcchhhc--cC-ceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHHHh
Confidence 66678888899999998 88 4899999999999999999887777778889999999999875 44444555555554
Q ss_pred HH
Q 001066 910 AL 911 (1167)
Q Consensus 910 A~ 911 (1167)
+.
T Consensus 242 ~~ 243 (353)
T 1sxj_D 242 AQ 243 (353)
T ss_dssp HH
T ss_pred cC
Confidence 43
No 61
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.50 E-value=6.8e-14 Score=175.89 Aligned_cols=203 Identities=18% Similarity=0.205 Sum_probs=145.0
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhh
Q 001066 686 ESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKY 765 (1167)
Q Consensus 686 ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~ 765 (1167)
..|+|.+.+++.+...+....... .. .-.+..++||+||||||||++|++||..+... ..+|+.+++..+...+
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~---~~-~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~ 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGL---KD-PKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKH 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTC---SC-TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSC
T ss_pred CcCcChHHHHHHHHHHHHHHHccc---CC-CCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhccccc
Confidence 568999999999988886531100 00 00122369999999999999999999998532 2478888888887665
Q ss_pred hchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc---------CCCceEEEccCCC
Q 001066 766 VGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK---------SRGSVVVIGATNR 836 (1167)
Q Consensus 766 ~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~---------~~~~ViVIaTTN~ 836 (1167)
... ...++...+...++|||||||+.+.+ .+++.|+..|+... ...+++||+|||.
T Consensus 565 ~~~----~~~l~~~~~~~~~~vl~lDEi~~~~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 565 STS----GGQLTEKVRRKPYSVVLLDAIEKAHP-----------DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp CCC-------CHHHHHHCSSSEEEEECGGGSCH-----------HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ccc----cchhhHHHHhCCCeEEEEeCccccCH-----------HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 544 12223344455779999999998864 78888999998632 2346789999996
Q ss_pred CCc------------CCcccCCCCCcccccccCCCCHHHHHHHHHHhhccC---------CCCCChhHHHHHHHH--ccC
Q 001066 837 PEA------------VDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERW---------PKPVTGSLLKWIAAR--TAG 893 (1167)
Q Consensus 837 ~d~------------Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~---------~~~l~d~~L~~LA~~--t~G 893 (1167)
+.. +.+.|++ ||+..|.|++|+.+++..|++.++..+ ...+++..+..|+.. ...
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 707 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLE 707 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTT
T ss_pred ChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCC
Confidence 543 6788887 999999999999999999998876542 334677888888774 345
Q ss_pred CcHHHHHHHHHHHHHHHH
Q 001066 894 FAGADLQALCTQAAIIAL 911 (1167)
Q Consensus 894 ~s~aDL~~Lv~~A~~~A~ 911 (1167)
+..+.|+++++++...++
T Consensus 708 ~~~R~L~~~i~~~v~~~l 725 (758)
T 3pxi_A 708 YGARPLRRAIQKHVEDRL 725 (758)
T ss_dssp TTTTTHHHHHHHHTHHHH
T ss_pred CCChHHHHHHHHHHHHHH
Confidence 677888888887765543
No 62
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=1.4e-13 Score=153.67 Aligned_cols=192 Identities=21% Similarity=0.219 Sum_probs=135.6
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
..|++++|.+.+++.+..++.. + ...++||+||||+|||++|+++|..+........++.+++.+..
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER 88 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH
T ss_pred CCHHHhhCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccC
Confidence 4688999999999999988754 1 22359999999999999999999987533222345555554322
Q ss_pred hhhhchHHHHHHHHHHHH--HhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcC
Q 001066 763 GKYVGDAERQLRLLFQVA--EKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAV 840 (1167)
Q Consensus 763 s~~~g~~e~~L~~lF~~A--~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~L 840 (1167)
+. ......+....... ....+.||||||+|.+.. ..+..|+..|+.. ...+++|++|+.+..+
T Consensus 89 ~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~~--~~~~~~i~~~~~~~~l 153 (327)
T 1iqp_A 89 GI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ-----------DAQQALRRTMEMF--SSNVRFILSCNYSSKI 153 (327)
T ss_dssp HH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH-----------HHHHHHHHHHHHT--TTTEEEEEEESCGGGS
T ss_pred ch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH-----------HHHHHHHHHHHhc--CCCCeEEEEeCCcccc
Confidence 11 11111111111100 013578999999998864 4566777777753 3457778889998889
Q ss_pred CcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHH
Q 001066 841 DPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQA 906 (1167)
Q Consensus 841 d~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A 906 (1167)
.+.+.+ |+. .+.|++|+.++..++|..++...+..+++..+..|+..+.| +.+.+.++++.+
T Consensus 154 ~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~ 215 (327)
T 1iqp_A 154 IEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAA 215 (327)
T ss_dssp CHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred CHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 999988 884 88999999999999999998877777788889999998876 444444444443
No 63
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=9e-14 Score=167.49 Aligned_cols=199 Identities=17% Similarity=0.174 Sum_probs=134.0
Q ss_pred cCcccccChHHHHHHHHHHHHccc-cChhhhhccCC---CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPL-LYPEFFDNLGL---TPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG 758 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl-~~~e~~~~lgl---~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~ 758 (1167)
.+|++|+|.+..++.|..++.... ..+..+...+. .+++++||+||||||||++|+++|+.++ ..++.+++
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~-----~~~i~in~ 110 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG-----YDILEQNA 110 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT-----CEEEEECT
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC-----CCEEEEeC
Confidence 479999999999999999886522 11223333333 2567899999999999999999999986 67888887
Q ss_pred cccchhhhchHHH-------HHHHHHHHH-----HhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCC
Q 001066 759 ADCLGKYVGDAER-------QLRLLFQVA-----EKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRG 826 (1167)
Q Consensus 759 ~~lls~~~g~~e~-------~L~~lF~~A-----~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~ 826 (1167)
.++.......... .+..+|..+ ....+.||||||+|.+..... ..+..|+.+++.. ..
T Consensus 111 s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~--------~~l~~L~~~l~~~--~~ 180 (516)
T 1sxj_A 111 SDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR--------GGVGQLAQFCRKT--ST 180 (516)
T ss_dssp TSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST--------THHHHHHHHHHHC--SS
T ss_pred CCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH--------HHHHHHHHHHHhc--CC
Confidence 7665432211000 012223322 124678999999999975211 2345666666642 33
Q ss_pred ceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHH
Q 001066 827 SVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQ 900 (1167)
Q Consensus 827 ~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~ 900 (1167)
.+++|+++.....+. .+.+ +...|.|++|+.+++.++|..++...+..+++..+..|+..+.|.....+.
T Consensus 181 ~iIli~~~~~~~~l~-~l~~---r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~ 250 (516)
T 1sxj_A 181 PLILICNERNLPKMR-PFDR---VCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVIN 250 (516)
T ss_dssp CEEEEESCTTSSTTG-GGTT---TSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHH
T ss_pred CEEEEEcCCCCccch-hhHh---ceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHH
Confidence 466665554444443 3544 447899999999999999998887666667888899999988764444433
No 64
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.49 E-value=6e-14 Score=156.18 Aligned_cols=192 Identities=21% Similarity=0.184 Sum_probs=134.6
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
..|++++|.+.+++.+..++.. ....++||+||||||||++|+++|..+........++.+++.+..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 80 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER 80 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTT
T ss_pred CCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcccc
Confidence 4789999999999988776532 122349999999999999999999987533333455666555432
Q ss_pred hhhhchHHHHHHHHHHHH-H-hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcC
Q 001066 763 GKYVGDAERQLRLLFQVA-E-KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAV 840 (1167)
Q Consensus 763 s~~~g~~e~~L~~lF~~A-~-~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~L 840 (1167)
+ .......+....... . ...+.||||||+|.+.. ..+..|+..|+.. ...+++|++||.+..+
T Consensus 81 ~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~~--~~~~~~i~~~~~~~~l 145 (319)
T 2chq_A 81 G--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEMY--SKSCRFILSCNYVSRI 145 (319)
T ss_dssp C--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH-----------HHHHTTGGGTSSS--SSSEEEEEEESCGGGS
T ss_pred C--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH-----------HHHHHHHHHHHhc--CCCCeEEEEeCChhhc
Confidence 2 111111222211000 0 13478999999998864 3455566666643 3467888889999999
Q ss_pred CcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHH
Q 001066 841 DPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQA 906 (1167)
Q Consensus 841 d~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A 906 (1167)
.+++.+ |+ ..+.|++|+.+++.++|..++...+..+++..+..|+..+.|.. +.+.++++.+
T Consensus 146 ~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~-r~~~~~l~~~ 207 (319)
T 2chq_A 146 IEPIQS--RC-AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDF-RKAINALQGA 207 (319)
T ss_dssp CHHHHT--TC-EEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCH-HHHHHHHHHH
T ss_pred chHHHh--hC-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHHHHHHH
Confidence 999998 88 58999999999999999999988777788889999998776643 4444444443
No 65
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.48 E-value=1.3e-12 Score=148.89 Aligned_cols=196 Identities=17% Similarity=0.257 Sum_probs=138.7
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
.+|++++|.+.++..+...+..... .+ .++.+++|+||||+|||||+++||..++. .+....+..+.
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~-------~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~-----~~~~~sg~~~~ 88 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKM-------RG-EVLDHVLLAGPPGLGKTTLAHIIASELQT-----NIHVTSGPVLV 88 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHH-------HT-CCCCCEEEESSTTSSHHHHHHHHHHHHTC-----CEEEEETTTCC
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHh-------cC-CCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEechHhc
Confidence 3788889999888888766643110 01 23467999999999999999999999863 33333332221
Q ss_pred hhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc----------------CCC
Q 001066 763 GKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK----------------SRG 826 (1167)
Q Consensus 763 s~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~----------------~~~ 826 (1167)
. ...+..++.. .....|+||||++.+.. .+...|+..+.... .-.
T Consensus 89 ~------~~~l~~~~~~--~~~~~v~~iDE~~~l~~-----------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~ 149 (334)
T 1in4_A 89 K------QGDMAAILTS--LERGDVLFIDEIHRLNK-----------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQ 149 (334)
T ss_dssp S------HHHHHHHHHH--CCTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCCCC---------------C
T ss_pred C------HHHHHHHHHH--ccCCCEEEEcchhhcCH-----------HHHHHHHHHHHhcccceeeccCcccccccccCC
Confidence 1 1112222221 23568999999998863 23334444443221 012
Q ss_pred ceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHH
Q 001066 827 SVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQA 906 (1167)
Q Consensus 827 ~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A 906 (1167)
.+.+|++|+.+..|++.+++ ||...+.|++|+.+++.+||+..+......+++..+..||.++.| +++.+..+++++
T Consensus 150 ~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~ 226 (334)
T 1in4_A 150 PFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRV 226 (334)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHH
T ss_pred CeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 46788899999999999998 998788999999999999999988877777888899999999887 567778888888
Q ss_pred HHHHHHc
Q 001066 907 AIIALKR 913 (1167)
Q Consensus 907 ~~~A~~R 913 (1167)
..+|..+
T Consensus 227 ~~~a~~~ 233 (334)
T 1in4_A 227 RDMLTVV 233 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 7777543
No 66
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.47 E-value=1e-12 Score=150.27 Aligned_cols=207 Identities=17% Similarity=0.148 Sum_probs=143.2
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhccCCCCCC--cEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPR--GVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 685 ~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~--~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
.++++|.+..++.|..++...+. + ..+. +++|+||||||||+++++++..+.... .+.++.+++....
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~--------~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLR--------N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYR 85 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHH--------S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCC
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--------C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCC
Confidence 36789999999999988754211 1 2223 799999999999999999999885431 2456666544322
Q ss_pred h------hh----------hc-hHHHHHHHHHHHHHh-cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccC
Q 001066 763 G------KY----------VG-DAERQLRLLFQVAEK-CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKS 824 (1167)
Q Consensus 763 s------~~----------~g-~~e~~L~~lF~~A~~-~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~ 824 (1167)
. .. .+ .....+..+...... ..|.||||||++.+. ...+..|+.+++....
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-----------~~~~~~L~~~~~~~~~ 154 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-----------PDILSTFIRLGQEADK 154 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-----------HHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-----------hHHHHHHHHHHHhCCC
Confidence 1 00 01 112222333333322 357899999999883 2567777777765532
Q ss_pred --CCceEEEccCCCC---CcCCcccCCCCCccc-ccccCCCCHHHHHHHHHHhhcc--CCCCCChhHHHHHHHHcc----
Q 001066 825 --RGSVVVIGATNRP---EAVDPALRRPGRFDR-EIYFPLPSMEDRAAILSLHTER--WPKPVTGSLLKWIAARTA---- 892 (1167)
Q Consensus 825 --~~~ViVIaTTN~~---d~Ld~aLlrpgRF~~-~I~~~~P~~eER~eIL~~~l~~--~~~~l~d~~L~~LA~~t~---- 892 (1167)
..++.||++|+.+ ..+++.+.+ ||.. .|.|++++.++..++|...+.. ....+++..+..++..+.
T Consensus 155 ~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 232 (389)
T 1fnn_A 155 LGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTP 232 (389)
T ss_dssp HSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSST
T ss_pred CCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccc
Confidence 2467888888877 567777777 7764 7999999999999999988764 233567888999999994
Q ss_pred ----CCcHHHHHHHHHHHHHHHHHcC
Q 001066 893 ----GFAGADLQALCTQAAIIALKRN 914 (1167)
Q Consensus 893 ----G~s~aDL~~Lv~~A~~~A~~R~ 914 (1167)
+-.++.+.+++..|...|..++
T Consensus 233 ~~~~~G~~r~~~~~l~~a~~~a~~~~ 258 (389)
T 1fnn_A 233 LDTNRGDARLAIDILYRSAYAAQQNG 258 (389)
T ss_dssp TCTTSCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 2366777888888888776654
No 67
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.47 E-value=1.6e-13 Score=172.41 Aligned_cols=198 Identities=23% Similarity=0.333 Sum_probs=143.9
Q ss_pred ccccChHHHHHHHHHHHHccccChhhhhccCC----CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc
Q 001066 686 ESVAGLQDVIRCMKEVVILPLLYPEFFDNLGL----TPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC 761 (1167)
Q Consensus 686 ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl----~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l 761 (1167)
..|+|.+.+++.+...+... ..|+ .+..++||+||||||||++|+++|..++ .+|+.+++..+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~ 524 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEY 524 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGC
T ss_pred hhccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhh
Confidence 45889999999888877542 1122 2334799999999999999999999985 57777777766
Q ss_pred chh------------hhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccC-----
Q 001066 762 LGK------------YVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKS----- 824 (1167)
Q Consensus 762 ls~------------~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~----- 824 (1167)
... |+|..+. ..+....+...++|||||||+.+.+ .+++.|+..|+...-
T Consensus 525 ~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~~-----------~~~~~Ll~~le~~~~~~~~g 591 (758)
T 1r6b_X 525 MERHTVSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAHP-----------DVFNILLQVMDNGTLTDNNG 591 (758)
T ss_dssp SSSSCCSSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEEEETTT
T ss_pred cchhhHhhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccCH-----------HHHHHHHHHhcCcEEEcCCC
Confidence 432 4443222 1233444556789999999998764 688899999985311
Q ss_pred ----CCceEEEccCCCCC-------------------------cCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccC
Q 001066 825 ----RGSVVVIGATNRPE-------------------------AVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERW 875 (1167)
Q Consensus 825 ----~~~ViVIaTTN~~d-------------------------~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~ 875 (1167)
..+++||+|||... .++++|++ ||+..|.|++|+.+++..|+..++..+
T Consensus 592 ~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~ 669 (758)
T 1r6b_X 592 RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVEL 669 (758)
T ss_dssp EEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHH
Confidence 24588999999743 56788887 999899999999999999999887632
Q ss_pred ---------CCCCChhHHHHHHHHcc--CCcHHHHHHHHHHHHHHHH
Q 001066 876 ---------PKPVTGSLLKWIAARTA--GFAGADLQALCTQAAIIAL 911 (1167)
Q Consensus 876 ---------~~~l~d~~L~~LA~~t~--G~s~aDL~~Lv~~A~~~A~ 911 (1167)
...+++..+..|+.+.. .+..+.|..+++++...++
T Consensus 670 ~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l 716 (758)
T 1r6b_X 670 QVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPL 716 (758)
T ss_dssp HHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHH
T ss_pred HHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHH
Confidence 23467778888887652 3457788888877765443
No 68
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.46 E-value=9.7e-14 Score=141.51 Aligned_cols=155 Identities=28% Similarity=0.426 Sum_probs=109.9
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC-----CceEEEEecc
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD-----KRIAYFARKG 758 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-----~~i~~~~l~~ 758 (1167)
.|++++|.+..++.+.+.+.. ....++||+||||||||++|+++|..+.... ....++.+++
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred ccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 578899999998888877633 3356899999999999999999999885421 1356666666
Q ss_pred cccc--hhhhchHHHHHHHHHHHHHhc-CCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCC
Q 001066 759 ADCL--GKYVGDAERQLRLLFQVAEKC-QPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATN 835 (1167)
Q Consensus 759 ~~ll--s~~~g~~e~~L~~lF~~A~~~-~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN 835 (1167)
..+. ..+.+.....+..++..+... .+.||||||++.+...+..... ...++..|...++ ...+++|++||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~--~~~~~~~l~~~~~----~~~~~ii~~~~ 160 (187)
T 2p65_A 87 SSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEG--ALDAGNILKPMLA----RGELRCIGATT 160 (187)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTT--SCCTHHHHHHHHH----TTCSCEEEEEC
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccccc--chHHHHHHHHHHh----cCCeeEEEecC
Confidence 5554 234556666778888777665 6789999999999754331110 1123333444443 46688999998
Q ss_pred CCC-----cCCcccCCCCCcccccccCCCC
Q 001066 836 RPE-----AVDPALRRPGRFDREIYFPLPS 860 (1167)
Q Consensus 836 ~~d-----~Ld~aLlrpgRF~~~I~~~~P~ 860 (1167)
.+. .++++|++ ||. .|.++.|+
T Consensus 161 ~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 161 VSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp HHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred HHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 765 58899998 996 58999885
No 69
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.46 E-value=5.2e-13 Score=152.33 Aligned_cols=192 Identities=19% Similarity=0.201 Sum_probs=138.9
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCc------------
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKR------------ 750 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~------------ 750 (1167)
..|++++|.+..++.|...+.. + ..+..+||+||+|+|||++|+++|..+......
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 80 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHH
T ss_pred CchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 4688999999999999988754 1 234568999999999999999999988642210
Q ss_pred -------eEEEEecccccchhhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHh
Q 001066 751 -------IAYFARKGADCLGKYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALM 819 (1167)
Q Consensus 751 -------i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lL 819 (1167)
..++.++.... ... ..++.++..+.. ..+.||||||+|.+.. ..++.|+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~Ll~~l 143 (373)
T 1jr3_A 81 EIEQGRFVDLIEIDAASR--TKV----EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALLKTL 143 (373)
T ss_dssp HHHTSCCSSCEEEETTCS--CCS----SCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH-----------HHHHHHHHHH
T ss_pred HHhccCCCceEEeccccc--CCH----HHHHHHHHHHhhccccCCeEEEEEECcchhcH-----------HHHHHHHHHH
Confidence 01222221110 011 123445544432 3467999999998864 4566777777
Q ss_pred hcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHH
Q 001066 820 DGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADL 899 (1167)
Q Consensus 820 d~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL 899 (1167)
+.. ...+++|++|+.+..+.+.+.+ |+ ..+.|++|+.++..++|..++...+..+++..+..|+..+.| ++..+
T Consensus 144 e~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r~~ 217 (373)
T 1jr3_A 144 EEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDA 217 (373)
T ss_dssp HSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHHHH
T ss_pred hcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHHHH
Confidence 753 3467888888888888899988 87 789999999999999999988776777788889999999876 66677
Q ss_pred HHHHHHHHHH
Q 001066 900 QALCTQAAII 909 (1167)
Q Consensus 900 ~~Lv~~A~~~ 909 (1167)
.+++..+..+
T Consensus 218 ~~~l~~~~~~ 227 (373)
T 1jr3_A 218 LSLTDQAIAS 227 (373)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777766543
No 70
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.45 E-value=7.2e-13 Score=150.80 Aligned_cols=210 Identities=20% Similarity=0.274 Sum_probs=140.9
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCC-ceEEEEecccccc
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDK-RIAYFARKGADCL 762 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~-~i~~~~l~~~~ll 762 (1167)
..++++|.+..++.|.+++...+. -..+..++|+||+|||||+|+++++..+..... ...++.+++....
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~ 88 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID 88 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC
Confidence 347789999999998887643211 134568999999999999999999998743211 2456666543221
Q ss_pred h------hh----------hc-hHHHHHHHHHHHHHhcC-CcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccC
Q 001066 763 G------KY----------VG-DAERQLRLLFQVAEKCQ-PSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKS 824 (1167)
Q Consensus 763 s------~~----------~g-~~e~~L~~lF~~A~~~~-psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~ 824 (1167)
. .. .+ .....+..++..+.... |.||||||++.+..... ..++..|+..++.. .
T Consensus 89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-------~~~l~~l~~~~~~~-~ 160 (386)
T 2qby_A 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-------DDILYKLSRINSEV-N 160 (386)
T ss_dssp SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-------STHHHHHHHHHHSC-C
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-------CHHHHHHhhchhhc-C
Confidence 1 10 11 12333455555554433 88999999998864210 14556666666544 3
Q ss_pred CCceEEEccCCCC---CcCCcccCCCCCcc-cccccCCCCHHHHHHHHHHhhcc--CCCCCChhHHHHHHHHcc---CCc
Q 001066 825 RGSVVVIGATNRP---EAVDPALRRPGRFD-REIYFPLPSMEDRAAILSLHTER--WPKPVTGSLLKWIAARTA---GFA 895 (1167)
Q Consensus 825 ~~~ViVIaTTN~~---d~Ld~aLlrpgRF~-~~I~~~~P~~eER~eIL~~~l~~--~~~~l~d~~L~~LA~~t~---G~s 895 (1167)
..++.+|++|+.+ ..+++.+.+ ||. ..|.|++|+.++..+||..++.. ....+++..+..++..+. | .
T Consensus 161 ~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G-~ 237 (386)
T 2qby_A 161 KSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHG-D 237 (386)
T ss_dssp C--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTC-C
T ss_pred CCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcC-C
Confidence 4568888888876 456777777 775 48999999999999999987653 134567778888888887 6 4
Q ss_pred HHHHHHHHHHHHHHHHHc
Q 001066 896 GADLQALCTQAAIIALKR 913 (1167)
Q Consensus 896 ~aDL~~Lv~~A~~~A~~R 913 (1167)
+..+.+++..|...|...
T Consensus 238 ~r~~~~ll~~a~~~a~~~ 255 (386)
T 2qby_A 238 ARRALDLLRVSGEIAERM 255 (386)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 555666888888777654
No 71
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.42 E-value=4.2e-13 Score=147.01 Aligned_cols=199 Identities=16% Similarity=0.098 Sum_probs=122.1
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
.+|++++|....++.+.+.+.... ....+|||+||||||||++|++|+..+... ..+|+.+++..+.
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~~~ 69 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAALN 69 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGGSC
T ss_pred cccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCCCC
Confidence 368889999999988887765421 234689999999999999999999887533 2467777776653
Q ss_pred hhh-----hchHHHH-------HHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc-------
Q 001066 763 GKY-----VGDAERQ-------LRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK------- 823 (1167)
Q Consensus 763 s~~-----~g~~e~~-------L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~------- 823 (1167)
... +|..... ....|.. ..+++||||||+.+.. .++..|+..|+...
T Consensus 70 ~~~~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~ 135 (265)
T 2bjv_A 70 ENLLDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPM-----------MVQEKLLRVIEYGELERVGGS 135 (265)
T ss_dssp HHHHHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCH-----------HHHHHHHHHHHHCEECCCCC-
T ss_pred hhHHHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcCH-----------HHHHHHHHHHHhCCeecCCCc
Confidence 211 1110000 0112222 3468999999998874 56677888887431
Q ss_pred --CCCceEEEccCCCC-C------cCCcccCCCCCcc-cccccCCCCH--HHHHHHHHHhhc----cCCC----CCChhH
Q 001066 824 --SRGSVVVIGATNRP-E------AVDPALRRPGRFD-REIYFPLPSM--EDRAAILSLHTE----RWPK----PVTGSL 883 (1167)
Q Consensus 824 --~~~~ViVIaTTN~~-d------~Ld~aLlrpgRF~-~~I~~~~P~~--eER~eIL~~~l~----~~~~----~l~d~~ 883 (1167)
....+.||+|||.+ . .+.+.|.+ ||. ..|.+|++.. ++...+++.++. .++. .+++..
T Consensus 136 ~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a 213 (265)
T 2bjv_A 136 QPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERA 213 (265)
T ss_dssp -CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHH
T ss_pred ccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHH
Confidence 12357888899874 1 35677776 774 2344444433 344444443332 2332 467788
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHH
Q 001066 884 LKWIAARTAGFAGADLQALCTQAAIIA 910 (1167)
Q Consensus 884 L~~LA~~t~G~s~aDL~~Lv~~A~~~A 910 (1167)
+..|..+....+.++|.+++.++...+
T Consensus 214 ~~~L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 214 RETLLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 888887765567888888888876554
No 72
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.42 E-value=9.8e-14 Score=161.17 Aligned_cols=68 Identities=25% Similarity=0.383 Sum_probs=60.7
Q ss_pred chhhhhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1091 NCSLLQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1091 ~~~~~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
+..++.+.+..++++ +|||||||||||+||+|||+++ | ++||+|++|+|++||+||+|++||++|...
T Consensus 170 ~pe~f~~~gi~~prG----vLL~GPPGTGKTllAkAiA~e~-~-~~f~~v~~s~l~sk~vGese~~vr~lF~~A 237 (405)
T 4b4t_J 170 HPELFESLGIAQPKG----VILYGPPGTGKTLLARAVAHHT-D-CKFIRVSGAELVQKYIGEGSRMVRELFVMA 237 (405)
T ss_dssp CHHHHHHHTCCCCCC----EEEESCSSSSHHHHHHHHHHHH-T-CEEEEEEGGGGSCSSTTHHHHHHHHHHHHH
T ss_pred CHHHHHhCCCCCCCc----eEEeCCCCCCHHHHHHHHHHhh-C-CCceEEEhHHhhccccchHHHHHHHHHHHH
Confidence 444556667777776 9999999999999999999999 4 999999999999999999999999999864
No 73
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.40 E-value=1.1e-12 Score=149.15 Aligned_cols=192 Identities=17% Similarity=0.171 Sum_probs=129.7
Q ss_pred cCcccccChHHHHHHHHHHH-HccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCc-e---------
Q 001066 683 EGFESVAGLQDVIRCMKEVV-ILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKR-I--------- 751 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l-~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~-i--------- 751 (1167)
.+|++++|.+.+++.+..++ .. + ..+. +||+||+|+|||++++++|+.+...... +
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~-----------~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~ 77 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQP-----------R-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVT 77 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCT-----------T-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC----------
T ss_pred CCHHHhcCCHHHHHHHHHHHhhC-----------C-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecc
Confidence 47899999999998887765 21 1 2233 9999999999999999999965322110 0
Q ss_pred --------------EEEEecccccchhhhchHHHHHHHHHHHHH--------------hcCCcEEEEcCCCCcCcccCcc
Q 001066 752 --------------AYFARKGADCLGKYVGDAERQLRLLFQVAE--------------KCQPSIIFFDEIDGLAPCRTRQ 803 (1167)
Q Consensus 752 --------------~~~~l~~~~lls~~~g~~e~~L~~lF~~A~--------------~~~psILfIDEID~L~~~~~~~ 803 (1167)
.++.+...... ... ...++.++..+. ...|.||+|||++.|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~----- 148 (354)
T 1sxj_E 78 ASNRKLELNVVSSPYHLEITPSDMG---NND-RIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK----- 148 (354)
T ss_dssp --------CCEECSSEEEECCC-------CC-HHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH-----
T ss_pred cccccceeeeecccceEEecHhhcC---Ccc-hHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH-----
Confidence 11222211110 000 012333333321 23577999999998653
Q ss_pred cccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCC-hh
Q 001066 804 QDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVT-GS 882 (1167)
Q Consensus 804 ~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~-d~ 882 (1167)
.....|+..|+... .+..+|.+|+.+..+.+.+++ |+ ..+.|++|+.++..++|+..+...+..++ +.
T Consensus 149 ------~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 217 (354)
T 1sxj_E 149 ------DAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLETKD 217 (354)
T ss_dssp ------HHHHHHHHHHHHST--TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSH
T ss_pred ------HHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHH
Confidence 45567778777653 346777788888889999998 88 88999999999999999998877666677 88
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHH
Q 001066 883 LLKWIAARTAGFAGADLQALCTQAAI 908 (1167)
Q Consensus 883 ~L~~LA~~t~G~s~aDL~~Lv~~A~~ 908 (1167)
.+..|+..+.|. .+++.++++.+..
T Consensus 218 ~l~~i~~~~~G~-~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 218 ILKRIAQASNGN-LRVSLLMLESMAL 242 (354)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHTHHHH
T ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHH
Confidence 899999988774 4444444454443
No 74
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.38 E-value=2.3e-12 Score=146.64 Aligned_cols=180 Identities=18% Similarity=0.163 Sum_probs=130.7
Q ss_pred cCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc
Q 001066 683 EGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL 762 (1167)
Q Consensus 683 ~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll 762 (1167)
..|++++|.+.+++.|...+.. + .. .++||+||||||||++|+++|+.+........++.++..+..
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~-----------g-~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 88 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDE-----------G-KL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR 88 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHT-----------T-CC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC
T ss_pred CcHHHhcCcHHHHHHHHHHHhc-----------C-CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc
Confidence 4688999999999998887754 2 12 249999999999999999999998644333455555554421
Q ss_pred hhhhchHHHHHHHHHHHHHh------cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCC
Q 001066 763 GKYVGDAERQLRLLFQVAEK------CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNR 836 (1167)
Q Consensus 763 s~~~g~~e~~L~~lF~~A~~------~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~ 836 (1167)
+ ...++..+..... ..+.|++|||+|.+.. ..++.|+..|+... ....+|.+||.
T Consensus 89 ~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~~--~~~~~il~~n~ 149 (340)
T 1sxj_C 89 G------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN-----------AAQNALRRVIERYT--KNTRFCVLANY 149 (340)
T ss_dssp S------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH-----------HHHHHHHHHHHHTT--TTEEEEEEESC
T ss_pred c------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhcCC--CCeEEEEEecC
Confidence 1 1223333322221 2368999999998864 44667888887643 34566678888
Q ss_pred CCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHH
Q 001066 837 PEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGA 897 (1167)
Q Consensus 837 ~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~a 897 (1167)
+..+.+++++ |+ ..+.|+.++.++..+++...+......+++..+..++..+.|....
T Consensus 150 ~~~i~~~i~s--R~-~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 150 AHKLTPALLS--QC-TRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRR 207 (340)
T ss_dssp GGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHH
T ss_pred ccccchhHHh--hc-eeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 9999999998 88 5889999999999999998887666667888888888887764433
No 75
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.38 E-value=1.3e-12 Score=166.36 Aligned_cols=207 Identities=21% Similarity=0.279 Sum_probs=144.6
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchh
Q 001066 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGK 764 (1167)
Q Consensus 685 ~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~ 764 (1167)
+..|+|.+.+++.+...+...... ... .-.+..++||+||||||||++|++||..+... ..+|+.+++..+...
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g---~~~-~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~--~~~~i~i~~~~~~~~ 630 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAG---LKD-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEK 630 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGG---CSC-SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS--GGGEEEECTTTCCSS
T ss_pred hcccCCcHHHHHHHHHHHHHHhcc---cCC-CCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhccch
Confidence 357899999999998887542110 000 00123479999999999999999999998532 246777777665432
Q ss_pred -----hh-------chHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc---------
Q 001066 765 -----YV-------GDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK--------- 823 (1167)
Q Consensus 765 -----~~-------g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~--------- 823 (1167)
.+ |..+ ...+....+...++|||||||+.+.. .+++.|+..|+...
T Consensus 631 ~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~l~~~~~~~~~g~~v 697 (854)
T 1qvr_A 631 HAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAHP-----------DVFNILLQILDDGRLTDSHGRTV 697 (854)
T ss_dssp GGGGGC----------------CHHHHHHHCSSEEEEESSGGGSCH-----------HHHHHHHHHHTTTEECCSSSCCE
T ss_pred hHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccCH-----------HHHHHHHHHhccCceECCCCCEe
Confidence 11 2211 12233334445678999999998764 78889999998532
Q ss_pred CCCceEEEccCCCC--------------------------CcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhcc---
Q 001066 824 SRGSVVVIGATNRP--------------------------EAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTER--- 874 (1167)
Q Consensus 824 ~~~~ViVIaTTN~~--------------------------d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~--- 874 (1167)
...+++||+|||.. ..+.+.|+. ||+..+.|++|+.+++..|+..++..
T Consensus 698 d~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~ 775 (854)
T 1qvr_A 698 DFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRA 775 (854)
T ss_dssp ECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 12357899999972 134566766 99889999999999999999887652
Q ss_pred ------CCCCCChhHHHHHHHHcc--CCcHHHHHHHHHHHHHHHHH
Q 001066 875 ------WPKPVTGSLLKWIAARTA--GFAGADLQALCTQAAIIALK 912 (1167)
Q Consensus 875 ------~~~~l~d~~L~~LA~~t~--G~s~aDL~~Lv~~A~~~A~~ 912 (1167)
....+++..+..|+.+.. .+..+.|+++++++...++.
T Consensus 776 ~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~ 821 (854)
T 1qvr_A 776 RLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLA 821 (854)
T ss_dssp HHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHH
T ss_pred HHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 223467888999999876 67889999999988776554
No 76
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.36 E-value=1.1e-12 Score=157.14 Aligned_cols=195 Identities=16% Similarity=0.154 Sum_probs=122.6
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc-----cccc
Q 001066 688 VAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG-----ADCL 762 (1167)
Q Consensus 688 L~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~-----~~ll 762 (1167)
|+|.+++++.+...+.. ..+|||+||||||||+||++||..+... .+|..+.+ .+++
T Consensus 24 ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~---~~f~~~~~~~~t~~dL~ 85 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNA---RAFEYLMTRFSTPEEVF 85 (500)
T ss_dssp CSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSC---CEEEEECCTTCCHHHHH
T ss_pred hHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhh---hHHHHHHHhcCCHHHhc
Confidence 58999998887766533 2589999999999999999999987532 12322222 2222
Q ss_pred hhhhchHHHHHHHHHHHHHhc---CCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc--------CCCceEEE
Q 001066 763 GKYVGDAERQLRLLFQVAEKC---QPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK--------SRGSVVVI 831 (1167)
Q Consensus 763 s~~~g~~e~~L~~lF~~A~~~---~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~--------~~~~ViVI 831 (1167)
+.+.+.... -...|..+... .++|||||||+.+.+ .++..|+..|+... ..+..++|
T Consensus 86 G~~~~~~~~-~~g~~~~~~~g~l~~~~IL~IDEI~r~~~-----------~~q~~LL~~lee~~v~i~G~~~~~~~~~iI 153 (500)
T 3nbx_X 86 GPLSIQALK-DEGRYERLTSGYLPEAEIVFLDEIWKAGP-----------AILNTLLTAINERQFRNGAHVEKIPMRLLV 153 (500)
T ss_dssp CCBC-----------CBCCTTSGGGCSEEEEESGGGCCH-----------HHHHHHHHHHHSSEEECSSSEEECCCCEEE
T ss_pred CcccHHHHh-hchhHHhhhccCCCcceeeeHHhHhhhcH-----------HHHHHHHHHHHHHhccCCCCcCCcchhhhh
Confidence 221111100 01222211111 467999999987654 67788998886421 11222456
Q ss_pred ccCCCCCc---CCcccCCCCCcccccccCCCCH-HHHHHHHHHhhccC-----------------------CCCCChhHH
Q 001066 832 GATNRPEA---VDPALRRPGRFDREIYFPLPSM-EDRAAILSLHTERW-----------------------PKPVTGSLL 884 (1167)
Q Consensus 832 aTTN~~d~---Ld~aLlrpgRF~~~I~~~~P~~-eER~eIL~~~l~~~-----------------------~~~l~d~~L 884 (1167)
+|||.+.. ..+++++ ||...|.+++|+. +++..|+....... ...+++..+
T Consensus 154 ~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~ 231 (500)
T 3nbx_X 154 AASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVF 231 (500)
T ss_dssp EEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHH
T ss_pred hccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHH
Confidence 67775322 3348888 9988899999987 77889987654211 233556666
Q ss_pred HHHHHHc---------cCCcHHHHHHHHHHHHHHHHHcC
Q 001066 885 KWIAART---------AGFAGADLQALCTQAAIIALKRN 914 (1167)
Q Consensus 885 ~~LA~~t---------~G~s~aDL~~Lv~~A~~~A~~R~ 914 (1167)
.+++... .+.+++.+..+++.|...|..++
T Consensus 232 e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~g 270 (500)
T 3nbx_X 232 ELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSG 270 (500)
T ss_dssp HHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcC
Confidence 6666654 36788888888888877777655
No 77
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.36 E-value=1.9e-11 Score=168.70 Aligned_cols=138 Identities=20% Similarity=0.305 Sum_probs=89.0
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHH----H-----------hc
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVA----E-----------KC 783 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A----~-----------~~ 783 (1167)
..++|||+||||||||++|+.++.... ...++.++.....+. ..+...+... . ..
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~----~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~g 1335 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSS----LYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSDI 1335 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCS----SCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSSS
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCC----CCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCCC
Confidence 347899999999999999966654432 245555544433221 2222333321 0 11
Q ss_pred CCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhc--ccCC--------CceEEEccCCCCC-----cCCcccCCCC
Q 001066 784 QPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDG--LKSR--------GSVVVIGATNRPE-----AVDPALRRPG 848 (1167)
Q Consensus 784 ~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~--l~~~--------~~ViVIaTTN~~d-----~Ld~aLlrpg 848 (1167)
.+.|||||||+..... .-+.+ ..+..|..+|+. +... .++.+|||||++. .|+++|+|
T Consensus 1336 k~~VlFiDEinmp~~d--~yg~q---~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR-- 1408 (2695)
T 4akg_A 1336 KNLVLFCDEINLPKLD--KYGSQ---NVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR-- 1408 (2695)
T ss_dssp SCEEEEEETTTCSCCC--SSSCC---HHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--
T ss_pred ceEEEEeccccccccc--ccCch---hHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--
Confidence 2469999999964432 11222 233334444442 1111 2589999999985 79999999
Q ss_pred CcccccccCCCCHHHHHHHHHHhhcc
Q 001066 849 RFDREIYFPLPSMEDRAAILSLHTER 874 (1167)
Q Consensus 849 RF~~~I~~~~P~~eER~eIL~~~l~~ 874 (1167)
|| ..|.++.|+.+++..|+..++..
T Consensus 1409 rf-~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1409 HA-AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp TE-EEEECCCCTTTHHHHHHHHHHHH
T ss_pred ee-eEEEeCCCCHHHHHHHHHHHHHH
Confidence 99 88999999999999999988754
No 78
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.35 E-value=4.8e-13 Score=157.24 Aligned_cols=67 Identities=19% Similarity=0.274 Sum_probs=59.0
Q ss_pred hhhhhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1092 CSLLQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1092 ~~~~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
..++.+.+..++++ +|||||||||||+||+|||+++ | ++|++|++|+|+++|+|++|++||.+|...
T Consensus 204 pe~f~~~g~~~prG----vLLyGPPGTGKTllAkAiA~e~-~-~~f~~v~~s~l~~~~vGese~~ir~lF~~A 270 (434)
T 4b4t_M 204 ADKFKDMGIRAPKG----ALMYGPPGTGKTLLARACAAQT-N-ATFLKLAAPQLVQMYIGEGAKLVRDAFALA 270 (434)
T ss_dssp SHHHHHHCCCCCCE----EEEESCTTSSHHHHHHHHHHHH-T-CEEEEEEGGGGCSSCSSHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCe----eEEECcCCCCHHHHHHHHHHHh-C-CCEEEEehhhhhhcccchHHHHHHHHHHHH
Confidence 34455666666665 9999999999999999999999 4 999999999999999999999999999753
No 79
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.35 E-value=4.6e-13 Score=156.14 Aligned_cols=67 Identities=19% Similarity=0.300 Sum_probs=59.1
Q ss_pred hhhhhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1092 CSLLQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1092 ~~~~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
..++.+.+..++++ ||||||||||||+||+|||+++ + ++||+|++++|+++|+|++|++||.+|...
T Consensus 205 pe~f~~~Gi~~prG----vLLyGPPGTGKTlLAkAiA~e~-~-~~fi~v~~s~l~sk~vGesek~ir~lF~~A 271 (437)
T 4b4t_I 205 PELYEEMGIKPPKG----VILYGAPGTGKTLLAKAVANQT-S-ATFLRIVGSELIQKYLGDGPRLCRQIFKVA 271 (437)
T ss_dssp CHHHHHHTCCCCSE----EEEESSTTTTHHHHHHHHHHHH-T-CEEEEEESGGGCCSSSSHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCC----CceECCCCchHHHHHHHHHHHh-C-CCEEEEEHHHhhhccCchHHHHHHHHHHHH
Confidence 34455666666665 9999999999999999999999 4 999999999999999999999999999854
No 80
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.34 E-value=6.3e-13 Score=156.40 Aligned_cols=68 Identities=22% Similarity=0.365 Sum_probs=60.7
Q ss_pred chhhhhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1091 NCSLLQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1091 ~~~~~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
+..++.+.+..|+++ ||||||||||||+||+|||+++ | ++||.|++|+|++||+|++|++|+.+|...
T Consensus 203 ~p~~f~~~g~~~prG----vLL~GPPGtGKTllAkAiA~e~-~-~~~~~v~~s~l~sk~~Gese~~ir~~F~~A 270 (437)
T 4b4t_L 203 NPEIFQRVGIKPPKG----VLLYGPPGTGKTLLAKAVAATI-G-ANFIFSPASGIVDKYIGESARIIREMFAYA 270 (437)
T ss_dssp CHHHHHHHCCCCCCE----EEEESCTTSSHHHHHHHHHHHH-T-CEEEEEEGGGTCCSSSSHHHHHHHHHHHHH
T ss_pred CHHHHHhCCCCCCCe----EEEECCCCCcHHHHHHHHHHHh-C-CCEEEEehhhhccccchHHHHHHHHHHHHH
Confidence 445566667776676 9999999999999999999999 4 999999999999999999999999999864
No 81
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.34 E-value=5.9e-13 Score=156.56 Aligned_cols=68 Identities=19% Similarity=0.273 Sum_probs=60.4
Q ss_pred chhhhhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1091 NCSLLQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1091 ~~~~~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
+..++.+.+..++++ ||||||||||||+||+|||+++ | ++||+|++++|+++|+|++|++||.+|...
T Consensus 231 ~pe~f~~~Gi~pprG----ILLyGPPGTGKTlLAkAiA~e~-~-~~fi~vs~s~L~sk~vGesek~ir~lF~~A 298 (467)
T 4b4t_H 231 SPERFATLGIDPPKG----ILLYGPPGTGKTLCARAVANRT-D-ATFIRVIGSELVQKYVGEGARMVRELFEMA 298 (467)
T ss_dssp CHHHHHHHTCCCCSE----EEECSCTTSSHHHHHHHHHHHH-T-CEEEEEEGGGGCCCSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHCCCCCCCc----eEeeCCCCCcHHHHHHHHHhcc-C-CCeEEEEhHHhhcccCCHHHHHHHHHHHHH
Confidence 444556667766676 9999999999999999999999 4 999999999999999999999999999864
No 82
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.33 E-value=6.4e-13 Score=156.08 Aligned_cols=68 Identities=19% Similarity=0.330 Sum_probs=60.4
Q ss_pred chhhhhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1091 NCSLLQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1091 ~~~~~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
+..++.+.|..++++ +|||||||||||+||+|||+++ | ++|++|++++++++|+|++|++||++|...
T Consensus 194 ~p~~~~~~g~~~prG----iLL~GPPGtGKT~lakAiA~~~-~-~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A 261 (428)
T 4b4t_K 194 QADLYEQIGIDPPRG----VLLYGPPGTGKTMLVKAVANST-K-AAFIRVNGSEFVHKYLGEGPRMVRDVFRLA 261 (428)
T ss_dssp CHHHHHHHCCCCCCE----EEEESCTTTTHHHHHHHHHHHH-T-CEEEEEEGGGTCCSSCSHHHHHHHHHHHHH
T ss_pred CHHHHHhCCCCCCce----EEEECCCCCCHHHHHHHHHHHh-C-CCeEEEecchhhccccchhHHHHHHHHHHH
Confidence 445556667766665 9999999999999999999999 4 999999999999999999999999999754
No 83
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.32 E-value=1.3e-12 Score=147.08 Aligned_cols=194 Identities=22% Similarity=0.255 Sum_probs=125.0
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhh-
Q 001066 687 SVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKY- 765 (1167)
Q Consensus 687 dL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~- 765 (1167)
+|+|....++.+.+.+... .....+|||+||||||||++|++|+..+... ..+|+.+++..+....
T Consensus 3 ~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~--~~~~v~v~~~~~~~~l~ 69 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARS--DRPLVTLNCAALNESLL 69 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCS--SSCCCEEECSSCCHHHH
T ss_pred CcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCccc--CCCeEEEeCCCCChHHH
Confidence 4788888888888877552 1345689999999999999999999876533 2456666665543211
Q ss_pred ----hch----HH---HHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc---------CC
Q 001066 766 ----VGD----AE---RQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK---------SR 825 (1167)
Q Consensus 766 ----~g~----~e---~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~---------~~ 825 (1167)
+|. +. ......|..+ ..++||||||+.+.. .++..|+..|+... ..
T Consensus 70 ~~~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~~ 135 (304)
T 1ojl_A 70 ESELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISP-----------LMQVRLLRAIQEREVQRVGSNQTIS 135 (304)
T ss_dssp HHHHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCH-----------HHHHHHHHHHHSSBCCBTTBCCCCB
T ss_pred HHHhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCH-----------HHHHHHHHHHhcCEeeecCCccccc
Confidence 111 00 0112334444 358999999999875 56677888887542 12
Q ss_pred CceEEEccCCCCC-------cCCcccCCCCCcccccccCCCCHH----HHHHHHHHhhcc----C---CCCCChhHHHHH
Q 001066 826 GSVVVIGATNRPE-------AVDPALRRPGRFDREIYFPLPSME----DRAAILSLHTER----W---PKPVTGSLLKWI 887 (1167)
Q Consensus 826 ~~ViVIaTTN~~d-------~Ld~aLlrpgRF~~~I~~~~P~~e----ER~eIL~~~l~~----~---~~~l~d~~L~~L 887 (1167)
..+.||+|||.+- .+.+.|.. ||. .+.+..|+.. +...++..++.. + ...+++..+..|
T Consensus 136 ~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L 212 (304)
T 1ojl_A 136 VDVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLL 212 (304)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHH
T ss_pred CCeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHH
Confidence 3588999998751 23445554 663 4444444444 444455544432 2 235677888889
Q ss_pred HHHccCCcHHHHHHHHHHHHHHH
Q 001066 888 AARTAGFAGADLQALCTQAAIIA 910 (1167)
Q Consensus 888 A~~t~G~s~aDL~~Lv~~A~~~A 910 (1167)
..+....+.++|.+++.+|...+
T Consensus 213 ~~~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 213 IHYDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp HHCCCSSHHHHHHHHHHHHHHHC
T ss_pred HcCCCCCCHHHHHHHHHHHHHhC
Confidence 88875668889999988887654
No 84
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.26 E-value=1.1e-12 Score=160.72 Aligned_cols=163 Identities=17% Similarity=0.228 Sum_probs=99.9
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEE----ecccccch
Q 001066 688 VAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFA----RKGADCLG 763 (1167)
Q Consensus 688 L~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~----l~~~~lls 763 (1167)
|+|.+.+++.+.-.+.... ........+....+|||+||||||||+||++||..+... ++. ..+..+..
T Consensus 297 I~G~e~vk~al~~~l~~g~--~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~-----~~~~~~~~~~~~l~~ 369 (595)
T 3f9v_A 297 IYGHWELKEALALALFGGV--PKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRA-----VYTTGKGSTAAGLTA 369 (595)
T ss_dssp TSCCHHHHHHHTTTTTCCC--CEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCE-----ECCCTTCSTTTTSEE
T ss_pred hcChHHHHHHHHHHHhCCC--cccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCc-----eecCCCccccccccc
Confidence 6899988877644332210 000000112334489999999999999999999877532 111 11122221
Q ss_pred hhhchHH-H---HHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc-----------CCCce
Q 001066 764 KYVGDAE-R---QLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK-----------SRGSV 828 (1167)
Q Consensus 764 ~~~g~~e-~---~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~-----------~~~~V 828 (1167)
....... . .....+..| ..+|||||||+.+.. .++..|+..|+... ...++
T Consensus 370 ~~~~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l~~-----------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~ 435 (595)
T 3f9v_A 370 AVVREKGTGEYYLEAGALVLA---DGGIAVIDEIDKMRD-----------EDRVAIHEAMEQQTVSIAKAGIVAKLNARA 435 (595)
T ss_dssp ECSSGGGTSSCSEEECHHHHH---SSSEECCTTTTCCCS-----------HHHHHHHHHHHSSSEEEESSSSEEEECCCC
T ss_pred eeeeccccccccccCCeeEec---CCCcEEeehhhhCCH-----------hHhhhhHHHHhCCEEEEecCCcEEEecCce
Confidence 1111000 0 001122223 458999999999875 56778888887521 13468
Q ss_pred EEEccCCCCC-------------cCCcccCCCCCcccc-cccCCCCHHHHHHHHHHhhcc
Q 001066 829 VVIGATNRPE-------------AVDPALRRPGRFDRE-IYFPLPSMEDRAAILSLHTER 874 (1167)
Q Consensus 829 iVIaTTN~~d-------------~Ld~aLlrpgRF~~~-I~~~~P~~eER~eIL~~~l~~ 874 (1167)
.||||||.+. .++++|++ ||+.. +.++.|+.+ ...|++..+..
T Consensus 436 ~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 436 AVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp EEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred EEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 8999999876 88999999 99754 455667777 77787776654
No 85
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=99.23 E-value=5.7e-13 Score=123.00 Aligned_cols=58 Identities=24% Similarity=0.483 Sum_probs=51.0
Q ss_pred HHhhcccccccCCCC--CCCceeecCCCCCCcccccccCCCcceeccc--------------cceecccccccc
Q 001066 542 ALCRGRALKCTRCGR--PGATIGCRVDRCPRTYHLPCARANGCIFDHR--------------KFLIACTDHRHL 599 (1167)
Q Consensus 542 ~~~~~~~~~C~iC~~--~GA~I~C~~~~C~~~FH~~CA~~~g~~~~~~--------------~~~~~C~~Hr~~ 599 (1167)
|++.||+++|++|++ .||||||+..+|.++||++||+.+|+.|.++ .+.+||++|.+.
T Consensus 11 Ip~~R~~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~aGl~~~~~~~~~~~~~~~~~~v~~~~yC~~HsPp 84 (87)
T 2lq6_A 11 IPPARWKLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKAGLYMKMEPVKELTGGGTTFSVRKTAYCDVHTPP 84 (87)
T ss_dssp CCCCCCCCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHHHTCCEEEEEEEECTTTSCEEEEEEEECCGGGSSS
T ss_pred CChHHhcCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHHCCCceEeecccccccCCccccceECeECcCCCCc
Confidence 567899999999985 3999999999999999999999999998543 467899999864
No 86
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.22 E-value=5.8e-11 Score=135.16 Aligned_cols=173 Identities=18% Similarity=0.201 Sum_probs=120.5
Q ss_pred hHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCc-------------------e
Q 001066 691 LQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKR-------------------I 751 (1167)
Q Consensus 691 le~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~-------------------i 751 (1167)
+.+..+.+...+.. + ..++.+||+||||+|||++|+++|+.+...... .
T Consensus 7 ~~~~~~~l~~~i~~-----------~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 74 (334)
T 1a5t_A 7 LRPDFEKLVASYQA-----------G-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_dssp GHHHHHHHHHHHHT-----------T-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred hHHHHHHHHHHHHc-----------C-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 45666666666543 1 345679999999999999999999988643211 1
Q ss_pred EEEEecccccchhhhchHHHHHHHHHHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCc
Q 001066 752 AYFARKGADCLGKYVGDAERQLRLLFQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGS 827 (1167)
Q Consensus 752 ~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ 827 (1167)
.++.+....- +. ......++.+++.+.. ..+.|+||||+|.+.. ...+.|+..|+.. ..+
T Consensus 75 d~~~~~~~~~-~~--~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~-----------~a~naLLk~lEep--~~~ 138 (334)
T 1a5t_A 75 DYYTLAPEKG-KN--TLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTD-----------AAANALLKTLEEP--PAE 138 (334)
T ss_dssp TEEEECCCTT-CS--SBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH-----------HHHHHHHHHHTSC--CTT
T ss_pred CEEEEecccc-CC--CCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCH-----------HHHHHHHHHhcCC--CCC
Confidence 2333332100 00 0112345566665543 2467999999999864 4567788888753 446
Q ss_pred eEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHH
Q 001066 828 VVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADL 899 (1167)
Q Consensus 828 ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL 899 (1167)
+++|.+|+.++.+.+.+++ |+ ..+.|++|+.++..++|.... .+++..+..++..+.|.....+
T Consensus 139 ~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~ 202 (334)
T 1a5t_A 139 TWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAAL 202 (334)
T ss_dssp EEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHH
T ss_pred eEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHH
Confidence 7788888889999999998 88 689999999999999998775 3567778888888877554443
No 87
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.21 E-value=7.2e-11 Score=144.88 Aligned_cols=205 Identities=23% Similarity=0.301 Sum_probs=129.3
Q ss_pred ccCcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc
Q 001066 682 FEGFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC 761 (1167)
Q Consensus 682 ~~~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l 761 (1167)
...|++++|...+++.+...+.. ..+++|+||||||||+||++||..+........++.......
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~ 101 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE 101 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT
T ss_pred ccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc
Confidence 45789999999999888777643 258999999999999999999998754321111111100000
Q ss_pred chh---hh--chH-------------------------------------------------HHHHHHHHH---------
Q 001066 762 LGK---YV--GDA-------------------------------------------------ERQLRLLFQ--------- 778 (1167)
Q Consensus 762 ls~---~~--g~~-------------------------------------------------e~~L~~lF~--------- 778 (1167)
... +. +.. ......+|.
T Consensus 102 ~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~ 181 (604)
T 3k1j_A 102 NMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQS 181 (604)
T ss_dssp TSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC--
T ss_pred cCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhc
Confidence 000 00 000 000011110
Q ss_pred --------------HHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc-------------------CC
Q 001066 779 --------------VAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK-------------------SR 825 (1167)
Q Consensus 779 --------------~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~-------------------~~ 825 (1167)
.+....+.+||||||+.|.+ .++..|+..|+... ..
T Consensus 182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~-----------~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p 250 (604)
T 3k1j_A 182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIATLSL-----------KMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVP 250 (604)
T ss_dssp --CCCCGGGGEECCHHHHTTTSEEEETTGGGSCH-----------HHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEE
T ss_pred CCccccccccccCceeeecCCCEEEEechhhCCH-----------HHHHHHHHHHHcCcEEecccccccccccCCCCccc
Confidence 11223568999999999854 56778888877321 12
Q ss_pred CceEEEccCCCC--CcCCcccCCCCCcc---cccccCCC---CHHHHHHHHHHhhcc-----CCCCCChhHHHHHHHHc-
Q 001066 826 GSVVVIGATNRP--EAVDPALRRPGRFD---REIYFPLP---SMEDRAAILSLHTER-----WPKPVTGSLLKWIAART- 891 (1167)
Q Consensus 826 ~~ViVIaTTN~~--d~Ld~aLlrpgRF~---~~I~~~~P---~~eER~eIL~~~l~~-----~~~~l~d~~L~~LA~~t- 891 (1167)
..+.||+|||.. ..++++|++ ||. ..+.|+.. ..+....+++.+... ....+++..+..|....
T Consensus 251 ~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~ 328 (604)
T 3k1j_A 251 CDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQ 328 (604)
T ss_dssp CCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHH
T ss_pred eeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHh
Confidence 357899999986 678999998 985 34555432 445566666544432 22456778888887755
Q ss_pred --cCC------cHHHHHHHHHHHHHHHHHcC
Q 001066 892 --AGF------AGADLQALCTQAAIIALKRN 914 (1167)
Q Consensus 892 --~G~------s~aDL~~Lv~~A~~~A~~R~ 914 (1167)
.|. +.++|.++++.|...|..++
T Consensus 329 r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~ 359 (604)
T 3k1j_A 329 KRAGRKGHLTLRLRDLGGIVRAAGDIAVKKG 359 (604)
T ss_dssp HTTCSTTEEECCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhccccccccCHHHHHHHHHHHHHHHHhcC
Confidence 442 68999999999988886554
No 88
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.19 E-value=3.6e-12 Score=169.17 Aligned_cols=54 Identities=19% Similarity=0.147 Sum_probs=47.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcccceE-----EEEeeh--hhHh--------hhcccc----hHHHHHHHhhh
Q 001066 1107 GFRVLISGSPGSGQRHLAACLLHSFIGNVE-----IQKVDL--ATIS--------QEGRGD----LVQGLTLLLSM 1163 (1167)
Q Consensus 1107 rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~-----fisvD~--sell--------~kyiGe----sE~nvr~iF~~ 1163 (1167)
|+ +|+|||||||||+||+++|.+- ..+ |+.++. ++++ ++|+|+ +|+.|+.+|++
T Consensus 1083 ~~-~l~~G~~g~GKT~la~~~~~~~--~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ 1155 (1706)
T 3cmw_A 1083 RI-VEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDAL 1155 (1706)
T ss_dssp SE-EEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CE-EEEEcCCCCChHHHHHHHHHHh--hhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHH
Confidence 44 9999999999999999999866 255 999987 7788 899999 99999999983
No 89
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.15 E-value=1.7e-09 Score=149.50 Aligned_cols=125 Identities=22% Similarity=0.212 Sum_probs=87.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcc
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPC 799 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~ 799 (1167)
..++++.||+|||||.+++++|+.++. .++.+++.+-+.. ..+..+|..+.. ..+.+++|||+++..
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~-----~~v~~nc~e~ld~------~~lg~~~~g~~~-~Gaw~~~DE~nr~~~- 711 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGR-----VVVVFNCDDSFDY------QVLSRLLVGITQ-IGAWGCFDEFNRLDE- 711 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTC-----CCEEEETTSSCCH------HHHHHHHHHHHH-HTCEEEEETTTSSCH-
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCC-----cEEEEECCCCCCh------hHhhHHHHHHHh-cCCEeeehhhhhcCh-
Confidence 357999999999999999999999984 5555566544421 334556655554 348999999998865
Q ss_pred cCcccccchHHHHHHH-------HHHhhc-----------ccCCCceEEEccCCC----CCcCCcccCCCCCcccccccC
Q 001066 800 RTRQQDQTHSSVVSTL-------LALMDG-----------LKSRGSVVVIGATNR----PEAVDPALRRPGRFDREIYFP 857 (1167)
Q Consensus 800 ~~~~~~~~~~~vl~~L-------L~lLd~-----------l~~~~~ViVIaTTN~----~d~Ld~aLlrpgRF~~~I~~~ 857 (1167)
.+++.+ +..+.. +.....+.|++|.|. ...|+.+|++ || +.|.+.
T Consensus 712 ----------evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~ 778 (2695)
T 4akg_A 712 ----------KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMK 778 (2695)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECC
T ss_pred ----------HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEee
Confidence 333333 222211 122345677888884 3478999998 88 789999
Q ss_pred CCCHHHHHHHHHH
Q 001066 858 LPSMEDRAAILSL 870 (1167)
Q Consensus 858 ~P~~eER~eIL~~ 870 (1167)
.|+.+...+|+-.
T Consensus 779 ~Pd~~~i~ei~l~ 791 (2695)
T 4akg_A 779 SPQSGTIAEMILQ 791 (2695)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999999888643
No 90
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.11 E-value=6.8e-10 Score=128.09 Aligned_cols=214 Identities=14% Similarity=0.120 Sum_probs=134.4
Q ss_pred ccccChHHHHHHHHHHH-HccccChhhhhccCCCCCCcEEE--EcCCCCcHHHHHHHHHHHhhcC----CCceEEEEecc
Q 001066 686 ESVAGLQDVIRCMKEVV-ILPLLYPEFFDNLGLTPPRGVLL--HGHPGTGKTLVVRALIGSCARG----DKRIAYFARKG 758 (1167)
Q Consensus 686 ddL~Gle~~k~~L~e~l-~~pl~~~e~~~~lgl~~~~~VLL--~GPpGTGKTtLAraLA~~l~~~----~~~i~~~~l~~ 758 (1167)
+.++|.+..++.|..++ ...... .+ ..+..++| +||||+|||+|+++++..+... ...+.++.+++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~------~~-~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSG------AG-LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 94 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTS------SC-BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred CCCCChHHHHHHHHHHHhHHHhcC------CC-CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC
Confidence 56899999999998887 432110 00 23457899 9999999999999999887531 01244555554
Q ss_pred ccc------chhhh----------ch-HHHHHHHHHHHHH-hcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhh
Q 001066 759 ADC------LGKYV----------GD-AERQLRLLFQVAE-KCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMD 820 (1167)
Q Consensus 759 ~~l------ls~~~----------g~-~e~~L~~lF~~A~-~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd 820 (1167)
... +.... +. ....+..+..... ...|.||||||++.+..... ....++..|+..+.
T Consensus 95 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-----~~~~~l~~l~~~~~ 169 (412)
T 1w5s_A 95 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-----IAAEDLYTLLRVHE 169 (412)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-----SCHHHHHHHHTHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-----cchHHHHHHHHHHH
Confidence 221 11100 10 1122233333222 24588999999998864210 12345556666665
Q ss_pred cccC-C--CceEEEccCCCCC---cCC---cccCCCCCcccccccCCCCHHHHHHHHHHhhcc--CCCCCChhHHHHHHH
Q 001066 821 GLKS-R--GSVVVIGATNRPE---AVD---PALRRPGRFDREIYFPLPSMEDRAAILSLHTER--WPKPVTGSLLKWIAA 889 (1167)
Q Consensus 821 ~l~~-~--~~ViVIaTTN~~d---~Ld---~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~--~~~~l~d~~L~~LA~ 889 (1167)
.... . .++.||++|+.++ .++ +.+.+ +|...+.|++++.++..+||...+.. ....+++..+..++.
T Consensus 170 ~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 247 (412)
T 1w5s_A 170 EIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISD 247 (412)
T ss_dssp HSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHH
T ss_pred hcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 4431 2 5788888887654 233 55555 56555999999999999999876542 223456778888999
Q ss_pred Hcc------CCcHHHHHHHHHHHHHHHHHcC
Q 001066 890 RTA------GFAGADLQALCTQAAIIALKRN 914 (1167)
Q Consensus 890 ~t~------G~s~aDL~~Lv~~A~~~A~~R~ 914 (1167)
.+. | .+..+..++..|...|..++
T Consensus 248 ~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~ 277 (412)
T 1w5s_A 248 VYGEDKGGDG-SARRAIVALKMACEMAEAMG 277 (412)
T ss_dssp HHCGGGTSCC-CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccCCC-cHHHHHHHHHHHHHHHHHcC
Confidence 888 6 56677788888777766543
No 91
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.10 E-value=8.8e-11 Score=117.56 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=79.3
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhh
Q 001066 687 SVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYV 766 (1167)
Q Consensus 687 dL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~ 766 (1167)
+|+|....++.+.+.+... .....+|||+||||||||++|++|+....... .+|+ +++..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~--~~~v-~~~~~~~~~-- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQ--GEFV-YRELTPDNA-- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTT--SCCE-EEECCTTTS--
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccC--CCEE-EECCCCCcc--
Confidence 4678888888888776542 13456899999999999999999998764322 3555 666654433
Q ss_pred chHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCC
Q 001066 767 GDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRP 837 (1167)
Q Consensus 767 g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~ 837 (1167)
..+..+|..+ ..++|||||||.+.. .++..|+..|... ...+.+|+|||.+
T Consensus 66 ----~~~~~~~~~a---~~g~l~ldei~~l~~-----------~~q~~Ll~~l~~~--~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 ----PQLNDFIALA---QGGTLVLSHPEHLTR-----------EQQYHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
T ss_dssp ----SCHHHHHHHH---TTSCEEEECGGGSCH-----------HHHHHHHHHHHSS--SCSSCEEEEESSC
T ss_pred ----hhhhcHHHHc---CCcEEEEcChHHCCH-----------HHHHHHHHHHhhc--CCCEEEEEECCcC
Confidence 2233445544 458999999999875 5667788887533 3456788888864
No 92
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.09 E-value=1.8e-11 Score=122.36 Aligned_cols=112 Identities=17% Similarity=0.208 Sum_probs=79.7
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhh
Q 001066 687 SVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYV 766 (1167)
Q Consensus 687 dL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~ 766 (1167)
+++|.+..++.+.+.+.... ....+|||+||||||||++|++|+.... +|+.+++..+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~~~~~~- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVEYLIDM- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTTHHHHC-
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhhCChHh-
Confidence 36888888888888775421 2346799999999999999999987653 67777777654433
Q ss_pred chHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCC
Q 001066 767 GDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRP 837 (1167)
Q Consensus 767 g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~ 837 (1167)
+..+|..+ .+++||||||+.+.. ..+..|+..|+... ..++.+|+|||.+
T Consensus 67 ------~~~~~~~a---~~~~l~lDei~~l~~-----------~~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 ------PMELLQKA---EGGVLYVGDIAQYSR-----------NIQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp ------HHHHHHHT---TTSEEEEEECTTCCH-----------HHHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred ------hhhHHHhC---CCCeEEEeChHHCCH-----------HHHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 34455544 458999999999875 55667777777543 3457788888764
No 93
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.02 E-value=1.5e-09 Score=122.39 Aligned_cols=147 Identities=10% Similarity=0.111 Sum_probs=103.9
Q ss_pred ChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcC-CCceEEEEecccccchhhhch
Q 001066 690 GLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARG-DKRIAYFARKGADCLGKYVGD 768 (1167)
Q Consensus 690 Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~-~~~i~~~~l~~~~lls~~~g~ 768 (1167)
|.+++.+.|...+.. + . ..++||+||||+|||++|+++|..++.- .....++.++... .. .
T Consensus 1 g~~~~~~~L~~~i~~-----------~-~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~~--~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------S-E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---EN--I 62 (305)
T ss_dssp ---CHHHHHHHHHHT-----------C-S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---SC--B
T ss_pred ChHHHHHHHHHHHHC-----------C-C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---CC--C
Confidence 556677777777654 2 2 4589999999999999999999875311 1122445554331 01 1
Q ss_pred HHHHHHHHHHHHHhc----CCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCCccc
Q 001066 769 AERQLRLLFQVAEKC----QPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPAL 844 (1167)
Q Consensus 769 ~e~~L~~lF~~A~~~----~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aL 844 (1167)
....++.++..+... ...|+||||+|.+.. ..++.|+..|+.. ...+++|.+|+.+..+.+++
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~lt~-----------~a~naLLk~LEep--~~~t~fIl~t~~~~kl~~tI 129 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ-----------QAANAFLKALEEP--PEYAVIVLNTRRWHYLLPTI 129 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH-----------HHHHHTHHHHHSC--CTTEEEEEEESCGGGSCHHH
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHhCH-----------HHHHHHHHHHhCC--CCCeEEEEEECChHhChHHH
Confidence 223456677766542 246999999999864 4567888888854 34567777788889999999
Q ss_pred CCCCCcccccccCCCCHHHHHHHHHHhh
Q 001066 845 RRPGRFDREIYFPLPSMEDRAAILSLHT 872 (1167)
Q Consensus 845 lrpgRF~~~I~~~~P~~eER~eIL~~~l 872 (1167)
++ | .+.|++|+.++..++|...+
T Consensus 130 ~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 130 KS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred Hc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99 7 88999999999999998876
No 94
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.00 E-value=4.8e-10 Score=149.17 Aligned_cols=158 Identities=16% Similarity=0.149 Sum_probs=111.9
Q ss_pred CCcccCcccccChHHHHHHHHHHHHccccC----------hhhhhc------cC------------CCCCCcEEEEcCCC
Q 001066 679 GKLFEGFESVAGLQDVIRCMKEVVILPLLY----------PEFFDN------LG------------LTPPRGVLLHGHPG 730 (1167)
Q Consensus 679 ~~~~~~~ddL~Gle~~k~~L~e~l~~pl~~----------~e~~~~------lg------------l~~~~~VLL~GPpG 730 (1167)
..+.++|++|.|+++.++.+.+.+.+|+.+ ++.|+. .| ++..+.+|||||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 344589999999999999999999999843 555655 22 44555699999999
Q ss_pred CcHHHHHHHHHHHhhcCCCceEEEEecc--cccc--------hhhhch----HHHHHHHHHHHHHhcCCcEEEEcCCCCc
Q 001066 731 TGKTLVVRALIGSCARGDKRIAYFARKG--ADCL--------GKYVGD----AERQLRLLFQVAEKCQPSIIFFDEIDGL 796 (1167)
Q Consensus 731 TGKTtLAraLA~~l~~~~~~i~~~~l~~--~~ll--------s~~~g~----~e~~L~~lF~~A~~~~psILfIDEID~L 796 (1167)
||||+||+++|.+.........|+.+.. ..++ .+|+++ .+..++.+|..|+...|++||+|+|+.|
T Consensus 1093 ~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al 1172 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 1172 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred CChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhc
Confidence 9999999999998876544445665533 2222 556666 8999999999999999999999999999
Q ss_pred CcccC---ccc---ccchHHHHHHHHHHhhcccCCCceEEEccCCCC
Q 001066 797 APCRT---RQQ---DQTHSSVVSTLLALMDGLKSRGSVVVIGATNRP 837 (1167)
Q Consensus 797 ~~~~~---~~~---~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~ 837 (1167)
.+.+. ..+ .....+++++++..|+.+....+|+|| +||+.
T Consensus 1173 ~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1173 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred CcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 98632 111 134467889999999988777788888 66653
No 95
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.93 E-value=5.6e-10 Score=124.89 Aligned_cols=54 Identities=11% Similarity=0.168 Sum_probs=48.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
++|||||||||||+||++||+.+ | .+|+.++++++.++|+|++++.++++|.++
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l-~-~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a 91 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKM-G-INPIMMSAGELESGNAGEPAKLIRQRYREA 91 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH-T-CCCEEEEHHHHHCC---HHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-C-CCEEEEeHHHhhhccCchhHHHHHHHHHHH
Confidence 59999999999999999999999 4 999999999999999999999999999765
No 96
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.85 E-value=8.1e-08 Score=133.86 Aligned_cols=137 Identities=18% Similarity=0.279 Sum_probs=85.3
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHH---Hh-------------
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVA---EK------------- 782 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A---~~------------- 782 (1167)
...+|||+||||||||+++..+...+. ...++.++.+..... ..+...+... ++
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~----~~~~~~infS~~Tta------~~l~~~~e~~~e~~~~~~~G~~~~p~~~ 1372 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFP----DFEVVSLNFSSATTP------ELLLKTFDHHCEYKRTPSGETVLRPTQL 1372 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCT----TEEEEEECCCTTCCH------HHHHHHHHHHEEEEECTTSCEEEEESST
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCC----CCceEEEEeeCCCCH------HHHHHHHhhcceEEeccCCCcccCCCcC
Confidence 356899999999999988766544332 245555555443321 2222222210 00
Q ss_pred cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhc--c--------cCCCceEEEccCCCCC-----cCCcccCCC
Q 001066 783 CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDG--L--------KSRGSVVVIGATNRPE-----AVDPALRRP 847 (1167)
Q Consensus 783 ~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~--l--------~~~~~ViVIaTTN~~d-----~Ld~aLlrp 847 (1167)
....|||||||+.-.. ..-+.+ ..+..|..+|+. + ..-.++.+|||+|.+. .|+++|+|
T Consensus 1373 Gk~~VlFiDDiNmp~~--D~yGtQ---~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r- 1446 (3245)
T 3vkg_A 1373 GKWLVVFCDEINLPST--DKYGTQ---RVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR- 1446 (3245)
T ss_dssp TCEEEEEETTTTCCCC--CTTSCC---HHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT-
T ss_pred CceEEEEecccCCCCc--cccccc---cHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh-
Confidence 1125999999996432 111111 344445555542 1 1123588999999873 58999998
Q ss_pred CCcccccccCCCCHHHHHHHHHHhhc
Q 001066 848 GRFDREIYFPLPSMEDRAAILSLHTE 873 (1167)
Q Consensus 848 gRF~~~I~~~~P~~eER~eIL~~~l~ 873 (1167)
|| ..|.++.|+.++...|+..++.
T Consensus 1447 -~F-~vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1447 -HA-PILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp -TC-CEEECCCCCHHHHHHHHHHHHH
T ss_pred -hc-eEEEeCCCCHHHHHHHHHHHHH
Confidence 88 6799999999999999876654
No 97
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.81 E-value=2.5e-09 Score=119.89 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=51.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
++|||||||||||+||++||+.+ + .+|+.|++++++++|.|+++++++.+|...
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~~-~-~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a 104 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANEC-Q-ANFISIKGPELLTMWFGESEANVREIFDKA 104 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHT-T-CEEEEECHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHHh-C-CCEEEEEhHHHHhhhcCchHHHHHHHHHHH
Confidence 39999999999999999999999 3 899999999999999999999999999864
No 98
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.80 E-value=3.8e-09 Score=119.43 Aligned_cols=54 Identities=22% Similarity=0.332 Sum_probs=51.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
++|||||||||||+||++||+.+ +.+|+.++.++++++|.|++++.++++|...
T Consensus 53 ~vLl~GppGtGKT~la~aia~~~--~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a 106 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATEA--NSTFFSVSSSDLVSKWMGESEKLVKQLFAMA 106 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHH--TCEEEEEEHHHHHTTTGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH--CCCEEEEchHHHhhcccchHHHHHHHHHHHH
Confidence 49999999999999999999999 3899999999999999999999999999863
No 99
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.79 E-value=2.8e-09 Score=120.82 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=51.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
++|||||||||||+||++||+++. ..+|+.+++++++++|.|++|++++++|...
T Consensus 47 ~iLL~GppGtGKT~la~ala~~~~-~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a 101 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATEAN-NSTFFSISSSDLVSKWLGESEKLVKNLFQLA 101 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTT-SCEEEEEECCSSCCSSCCSCHHHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHHHcC-CCcEEEEEhHHHHhhhhhHHHHHHHHHHHHH
Confidence 499999999999999999999984 4899999999999999999999999999753
No 100
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.78 E-value=4.6e-09 Score=116.54 Aligned_cols=65 Identities=18% Similarity=0.328 Sum_probs=55.9
Q ss_pred hhhhhccccCCCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1094 LLQNISCTASKGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1094 ~~~~~~~~~~~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
++.+.+..++++ +|||||||||||+||++||..+ + ..++.|++++++++|.|+++++|+.+|+..
T Consensus 35 ~l~~~~l~~~~G----vlL~Gp~GtGKTtLakala~~~-~-~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a 99 (274)
T 2x8a_A 35 QFKALGLVTPAG----VLLAGPPGCGKTLLAKAVANES-G-LNFISVKGPELLNMYVGESERAVRQVFQRA 99 (274)
T ss_dssp HHHHTTCCCCSE----EEEESSTTSCHHHHHHHHHHHT-T-CEEEEEETTTTCSSTTHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe----EEEECCCCCcHHHHHHHHHHHc-C-CCEEEEEcHHHHhhhhhHHHHHHHHHHHHH
Confidence 344444444443 9999999999999999999998 3 899999999999999999999999999974
No 101
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.77 E-value=6.8e-09 Score=120.72 Aligned_cols=194 Identities=20% Similarity=0.256 Sum_probs=119.9
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhh-
Q 001066 687 SVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKY- 765 (1167)
Q Consensus 687 dL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~- 765 (1167)
.++|....++.+.+.+... .....+|||+|++|||||++|++|+....+. .-+|+.+++..+....
T Consensus 138 ~~ig~s~~m~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~--~~~fv~v~~~~~~~~~~ 204 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKI-----------SCAECPVLITGESGVGKEVVARLIHKLSDRS--KEPFVALNVASIPRDIF 204 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHH-----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTT--TSCEEEEETTTSCHHHH
T ss_pred hhhhccHHhhHHHHHHHHh-----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCC--CCCeEEEecCCCCHHHH
Confidence 3456656666666655431 1334679999999999999999998876543 3467888877653221
Q ss_pred ----hchHH-------HHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc---------CC
Q 001066 766 ----VGDAE-------RQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK---------SR 825 (1167)
Q Consensus 766 ----~g~~e-------~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~---------~~ 825 (1167)
+|... ......|..| ..++||||||+.|.. .++..|+..|+... ..
T Consensus 205 ~~elfg~~~g~~tga~~~~~g~~~~a---~~gtlfldei~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~~ 270 (387)
T 1ny5_A 205 EAELFGYEKGAFTGAVSSKEGFFELA---DGGTLFLDEIGELSL-----------EAQAKLLRVIESGKFYRLGGRKEIE 270 (387)
T ss_dssp HHHHHCBCTTSSTTCCSCBCCHHHHT---TTSEEEEESGGGCCH-----------HHHHHHHHHHHHSEECCBTCCSBEE
T ss_pred HHHhcCCCCCCCCCcccccCCceeeC---CCcEEEEcChhhCCH-----------HHHHHHHHHHhcCcEEeCCCCceee
Confidence 11100 0012334444 348999999999975 67788888887521 11
Q ss_pred CceEEEccCCCCCcCCcccCCCCCcc-------cccccCCCCHHHHH----HHHHHhhc----cCCC---CCChhHHHHH
Q 001066 826 GSVVVIGATNRPEAVDPALRRPGRFD-------REIYFPLPSMEDRA----AILSLHTE----RWPK---PVTGSLLKWI 887 (1167)
Q Consensus 826 ~~ViVIaTTN~~d~Ld~aLlrpgRF~-------~~I~~~~P~~eER~----eIL~~~l~----~~~~---~l~d~~L~~L 887 (1167)
..+.||+|||..- .. +...|+|. ..+.+..|...+|. .++..++. .++. .+++..+..|
T Consensus 271 ~~~rii~at~~~l--~~-~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l 347 (387)
T 1ny5_A 271 VNVRILAATNRNI--KE-LVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELL 347 (387)
T ss_dssp CCCEEEEEESSCH--HH-HHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHH
T ss_pred ccEEEEEeCCCCH--HH-HHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 2578999998642 11 11133442 23344556665553 33333332 2332 2567788888
Q ss_pred HHHccCCcHHHHHHHHHHHHHHH
Q 001066 888 AARTAGFAGADLQALCTQAAIIA 910 (1167)
Q Consensus 888 A~~t~G~s~aDL~~Lv~~A~~~A 910 (1167)
..+..-.+.++|++++.+|...+
T Consensus 348 ~~~~wpGNvreL~~~i~~~~~~~ 370 (387)
T 1ny5_A 348 LSYPWYGNVRELKNVIERAVLFS 370 (387)
T ss_dssp HHSCCTTHHHHHHHHHHHHHHHC
T ss_pred HhCCCCcHHHHHHHHHHHHHHhC
Confidence 88877778889999999887654
No 102
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.74 E-value=8.8e-09 Score=118.33 Aligned_cols=54 Identities=20% Similarity=0.311 Sum_probs=48.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
+||||||||||||+||++||+.+ + .+|+.++.++++++|+|++++.++.+|...
T Consensus 86 ~iLL~GppGtGKT~la~ala~~~-~-~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a 139 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATEA-N-STFFSVSSSDLVSKWMGESEKLVKQLFAMA 139 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH-T-CEEEEEEHHHHHSCC---CHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh-C-CCEEEeeHHHHhhhhcchHHHHHHHHHHHH
Confidence 39999999999999999999999 3 999999999999999999999999999763
No 103
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.71 E-value=8.2e-07 Score=124.04 Aligned_cols=124 Identities=19% Similarity=0.207 Sum_probs=85.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCccc
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCR 800 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~ 800 (1167)
.+..+.||+|||||.+++.+|+.++ ..++.++|.+-+.. ..+..+|.-+.. ..+..++|||+++..
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lg-----r~~~vfnC~~~~d~------~~~g~i~~G~~~-~GaW~cfDEfNrl~~-- 670 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLG-----RFVLVFCCDEGFDL------QAMSRIFVGLCQ-CGAWGCFDEFNRLEE-- 670 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT-----CCEEEEECSSCCCH------HHHHHHHHHHHH-HTCEEEEETTTSSCH--
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhC-----CeEEEEeCCCCCCH------HHHHHHHhhHhh-cCcEEEehhhhcCCH--
Confidence 4678999999999999999999999 35555666554422 233444544443 357789999999864
Q ss_pred CcccccchHHHHHHHHHHhh-----------------c--ccCCCceEEEccCCC----CCcCCcccCCCCCcccccccC
Q 001066 801 TRQQDQTHSSVVSTLLALMD-----------------G--LKSRGSVVVIGATNR----PEAVDPALRRPGRFDREIYFP 857 (1167)
Q Consensus 801 ~~~~~~~~~~vl~~LL~lLd-----------------~--l~~~~~ViVIaTTN~----~d~Ld~aLlrpgRF~~~I~~~ 857 (1167)
.+++.+...|. + +.-+..+.|++|.|. ..+|+.+|+. || +.|.+.
T Consensus 671 ---------~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~ 738 (3245)
T 3vkg_A 671 ---------RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMI 738 (3245)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECC
T ss_pred ---------HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEe
Confidence 33333333222 1 122345677878884 3578999998 89 779999
Q ss_pred CCCHHHHHHHHHH
Q 001066 858 LPSMEDRAAILSL 870 (1167)
Q Consensus 858 ~P~~eER~eIL~~ 870 (1167)
.|+.+...+|+-.
T Consensus 739 ~Pd~~~i~ei~L~ 751 (3245)
T 3vkg_A 739 KPDREMIAQVMLY 751 (3245)
T ss_dssp SCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999998888643
No 104
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.69 E-value=1.9e-08 Score=116.29 Aligned_cols=192 Identities=19% Similarity=0.300 Sum_probs=119.2
Q ss_pred cccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhh-
Q 001066 687 SVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKY- 765 (1167)
Q Consensus 687 dL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~- 765 (1167)
.++|....+..+.+.+... . ....++||+|++||||+++|++|+....+.. .|+.++|..+....
T Consensus 130 ~~ig~s~~~~~~~~~~~~~-------a----~~~~~vli~GesGtGKe~lAr~ih~~s~r~~---~fv~vnc~~~~~~~~ 195 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKI-------A----KSKAPVLITGESGTGKEIVARLIHRYSGRKG---AFVDLNCASIPQELA 195 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHH-------H----TSCSCEEEECCTTSSHHHHHHHHHHHHCCCS---CEEEEESSSSCTTTH
T ss_pred cccccchHHHHHHhhhhhh-------h----ccchhheEEeCCCchHHHHHHHHHHhccccC---CcEEEEcccCChHHH
Confidence 4678777777776665431 1 2345699999999999999999998776442 28888887653221
Q ss_pred ----hchHHH-------HHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhccc--C-------C
Q 001066 766 ----VGDAER-------QLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLK--S-------R 825 (1167)
Q Consensus 766 ----~g~~e~-------~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~--~-------~ 825 (1167)
+|.... .....|+.| ..++||||||+.|.. .++..|+..|+.-. . .
T Consensus 196 ~~~lfg~~~g~~tga~~~~~g~~~~a---~~gtlfldei~~l~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~ 261 (368)
T 3dzd_A 196 ESELFGHEKGAFTGALTRKKGKLELA---DQGTLFLDEVGELDQ-----------RVQAKLLRVLETGSFTRLGGNQKIE 261 (368)
T ss_dssp HHHHHEECSCSSSSCCCCEECHHHHT---TTSEEEEETGGGSCH-----------HHHHHHHHHHHHSEECCBTCCCBEE
T ss_pred HHHhcCccccccCCcccccCChHhhc---CCCeEEecChhhCCH-----------HHHHHHHHHHHhCCcccCCCCccee
Confidence 111000 011234444 447999999999975 77788888887521 1 1
Q ss_pred CceEEEccCCCCCcCCcccCCCCCccc-------ccccCCCCHHH----HHHHHHHhhcc----CC---CCCChhHHHHH
Q 001066 826 GSVVVIGATNRPEAVDPALRRPGRFDR-------EIYFPLPSMED----RAAILSLHTER----WP---KPVTGSLLKWI 887 (1167)
Q Consensus 826 ~~ViVIaTTN~~d~Ld~aLlrpgRF~~-------~I~~~~P~~eE----R~eIL~~~l~~----~~---~~l~d~~L~~L 887 (1167)
-.+.+|+|||.. +...+. .|+|.. .+.+..|...+ ...++..++.. +. ..+++..+..|
T Consensus 262 ~~~rii~at~~~--l~~~v~-~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 338 (368)
T 3dzd_A 262 VDIRVISATNKN--LEEEIK-KGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYL 338 (368)
T ss_dssp CCCEEEEEESSC--HHHHHH-TTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHH
T ss_pred eeeEEEEecCCC--HHHHHH-cCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 247789999853 111111 233322 33333444444 44444444432 22 34678888888
Q ss_pred HHHccCCcHHHHHHHHHHHHHH
Q 001066 888 AARTAGFAGADLQALCTQAAII 909 (1167)
Q Consensus 888 A~~t~G~s~aDL~~Lv~~A~~~ 909 (1167)
..+...-+.++|++++++|...
T Consensus 339 ~~~~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 339 MKQEWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp HTCCCTTHHHHHHHHHHHHHHT
T ss_pred HhCCCCcHHHHHHHHHHHHHHh
Confidence 8887666888899998887654
No 105
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.67 E-value=8.8e-07 Score=99.25 Aligned_cols=190 Identities=15% Similarity=0.106 Sum_probs=114.3
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccc----
Q 001066 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGAD---- 760 (1167)
Q Consensus 685 ~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~---- 760 (1167)
-..++|.+..++.|.+++.. + ..++|+||+|+|||+|++.++...+ ..++.+....
T Consensus 11 ~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 11 REDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP-----GILIDCRELYAERG 70 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEEHHHHHHTTT
T ss_pred hHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEEeeccccccc
Confidence 35679999999999887643 1 5799999999999999999998753 3333332111
Q ss_pred ------cchhh---h-------------------------chHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCccccc
Q 001066 761 ------CLGKY---V-------------------------GDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQ 806 (1167)
Q Consensus 761 ------lls~~---~-------------------------g~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~ 806 (1167)
++... + ......+..+...+....|.+|+|||++.+.... ..
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~----~~ 146 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG----SR 146 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT----TT
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC----cc
Confidence 00000 0 0112222222222332348999999999886310 00
Q ss_pred chHHHHHHHHHHhhcccCCCceEEEccCCCCC---c------CCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCC
Q 001066 807 THSSVVSTLLALMDGLKSRGSVVVIGATNRPE---A------VDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPK 877 (1167)
Q Consensus 807 ~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d---~------Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~ 877 (1167)
....++..|..+++.. .++.+|.|+.... . ....+. +|+...+.+++.+.++..+++...+...+.
T Consensus 147 ~~~~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~ 221 (350)
T 2qen_A 147 GGKELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREVNL 221 (350)
T ss_dssp TTHHHHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred chhhHHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 1123334444444432 3455555554321 1 112232 366568999999999999999887765555
Q ss_pred CCChhHHHHHHHHccCCcHHHHHHHHH
Q 001066 878 PVTGSLLKWIAARTAGFAGADLQALCT 904 (1167)
Q Consensus 878 ~l~d~~L~~LA~~t~G~s~aDL~~Lv~ 904 (1167)
.+++..+..+...+.|+ |..|..++.
T Consensus 222 ~~~~~~~~~i~~~tgG~-P~~l~~~~~ 247 (350)
T 2qen_A 222 DVPENEIEEAVELLDGI-PGWLVVFGV 247 (350)
T ss_dssp CCCHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 56777888888888874 555665554
No 106
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.67 E-value=1.3e-08 Score=120.85 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=50.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
++|||||||||||+||++||+.+..++.|+.+++++++++|+|++|+ ++++|.+.
T Consensus 65 ~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a 119 (456)
T 2c9o_A 65 AVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRA 119 (456)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHT
T ss_pred eEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHH
Confidence 39999999999999999999999323899999999999999999999 99999875
No 107
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.64 E-value=4.6e-08 Score=100.64 Aligned_cols=131 Identities=12% Similarity=0.119 Sum_probs=69.9
Q ss_pred cCcccccC----hHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhh-cCCCceEEEEec
Q 001066 683 EGFESVAG----LQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCA-RGDKRIAYFARK 757 (1167)
Q Consensus 683 ~~~ddL~G----le~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~-~~~~~i~~~~l~ 757 (1167)
.+|+++++ ...+++.+.+++. .+.+....+++|+||+|||||+|+++++..+. .....+.+ ++
T Consensus 7 ~~f~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~--~~ 74 (180)
T 3ec2_A 7 ANLDTYHPKNVSQNRALLTIRVFVH----------NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF--FD 74 (180)
T ss_dssp CCSSSCCCCSHHHHHHHHHHHHHHH----------SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE--EE
T ss_pred CccccccCCCHHHHHHHHHHHHHHH----------hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE--EE
Confidence 35666665 3444444444432 33344567899999999999999999999885 22222223 33
Q ss_pred ccccchhhhchHHHH-HHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCC
Q 001066 758 GADCLGKYVGDAERQ-LRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNR 836 (1167)
Q Consensus 758 ~~~lls~~~g~~e~~-L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~ 836 (1167)
..+++..+....... ...++.. ...|.+|+|||++.... + ......|..+|+.....+. .+|.|||.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~~~------~---~~~~~~l~~ll~~~~~~~~-~ii~tsn~ 142 (180)
T 3ec2_A 75 TKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSERL------S---DWQRELISYIITYRYNNLK-STIITTNY 142 (180)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSSCC------C---HHHHHHHHHHHHHHHHTTC-EEEEECCC
T ss_pred HHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCCcC------C---HHHHHHHHHHHHHHHHcCC-CEEEEcCC
Confidence 333332221111100 0111111 23689999999985421 1 1233345555555433333 44557765
Q ss_pred C
Q 001066 837 P 837 (1167)
Q Consensus 837 ~ 837 (1167)
+
T Consensus 143 ~ 143 (180)
T 3ec2_A 143 S 143 (180)
T ss_dssp C
T ss_pred C
Confidence 4
No 108
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.60 E-value=1.4e-08 Score=120.15 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=42.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
++|||||||||||+||++||+.+. ..+|+.|++++++++|+|+++++++.+|...
T Consensus 169 ~vLL~GppGtGKT~lA~aia~~~~-~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a 223 (444)
T 2zan_A 169 GILLFGPPGTGKSYLAKAVATEAN-NSTFFSISSSDLVSKWLGESEKLVKNLFQLA 223 (444)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCC-SSEEEEECCC---------CCCTHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC-CCCEEEEeHHHHHhhhcchHHHHHHHHHHHH
Confidence 399999999999999999999984 3899999999999999999999999999753
No 109
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.59 E-value=3.8e-08 Score=108.31 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=50.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
++|||||||||||+||++||+.+ + ..|+.+..+++++.|+|++++.++++|...
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~-~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 106 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATET-N-ATFIRVVGSELVKKFIGEGASLVKDIFKLA 106 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHT-T-CEEEEEEGGGGCCCSTTHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh-C-CCEEEEehHHHHHhccchHHHHHHHHHHHH
Confidence 49999999999999999999999 3 899999999999999999999999999763
No 110
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.59 E-value=4.6e-07 Score=106.78 Aligned_cols=146 Identities=17% Similarity=0.114 Sum_probs=86.3
Q ss_pred ccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHH-HHHhhcCCCceEEEEecccc---cch
Q 001066 688 VAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRAL-IGSCARGDKRIAYFARKGAD---CLG 763 (1167)
Q Consensus 688 L~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraL-A~~l~~~~~~i~~~~l~~~~---lls 763 (1167)
|.|++.+++.|.-++.-.... +....+|||.|+||| ||+||+++ +..+. +..|....++. +..
T Consensus 215 I~G~e~vK~aLll~L~GG~~k--------~rgdihVLL~G~PGt-KS~Lar~i~~~i~p----R~~ft~g~~ss~~gLt~ 281 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK--------NSERLHVLLAGYPVV-CSEILHHVLDHLAP----RGVYVDLRRTELTDLTA 281 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS--------GGGCCCEEEESCHHH-HHHHHHHHHHHTCS----SEEEEEGGGCCHHHHSE
T ss_pred cCCCHHHHHHHHHHHcCCccc--------cCCceeEEEECCCCh-HHHHHHHHHHHhCC----CeEEecCCCCCccCceE
Confidence 488998887776655432111 122347999999999 99999999 66543 23343322211 111
Q ss_pred hhhchHH-HHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcc-------cCCCceEEEccCC
Q 001066 764 KYVGDAE-RQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGL-------KSRGSVVVIGATN 835 (1167)
Q Consensus 764 ~~~g~~e-~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l-------~~~~~ViVIaTTN 835 (1167)
...+... ..-...+..| ...|+|||||+.+.. ..+..|+..|+.- .-..++.||||+|
T Consensus 282 s~r~~tG~~~~~G~l~LA---dgGvl~lDEIn~~~~-----------~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~N 347 (506)
T 3f8t_A 282 VLKEDRGWALRAGAAVLA---DGGILAVDHLEGAPE-----------PHRWALMEAMDKGTVTVDGIALNARCAVLAAIN 347 (506)
T ss_dssp EEEESSSEEEEECHHHHT---TTSEEEEECCTTCCH-----------HHHHHHHHHHHHSEEEETTEEEECCCEEEEEEC
T ss_pred EEEcCCCcccCCCeeEEc---CCCeeehHhhhhCCH-----------HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeC
Confidence 1000000 0001122223 358999999998875 7788888888742 1234689999999
Q ss_pred CCC-----------cCCcccCCCCCccccc-ccCCCCHH
Q 001066 836 RPE-----------AVDPALRRPGRFDREI-YFPLPSME 862 (1167)
Q Consensus 836 ~~d-----------~Ld~aLlrpgRF~~~I-~~~~P~~e 862 (1167)
... .|++++++ ||+..+ .+..|+.+
T Consensus 348 P~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e 384 (506)
T 3f8t_A 348 PGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPG 384 (506)
T ss_dssp CCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC-----
T ss_pred cccccCCCCCccccCCChHHhh--heeeEEEecCCCChh
Confidence 864 67889998 996543 44555443
No 111
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.58 E-value=2.9e-08 Score=108.06 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=50.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
++|||||||||||+||++||+.+ +..|+.++++.+.++|+|+++++++.+|+..
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a 100 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEA--KVPFFTISGSDFVEMFVGVGASRVRDMFEQA 100 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH--TCCEEEECSCSSTTSCCCCCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHc--CCCEEEEeHHHHHHHhhhhhHHHHHHHHHHH
Confidence 39999999999999999999998 3899999999999999999999999999874
No 112
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.57 E-value=3.4e-08 Score=106.93 Aligned_cols=54 Identities=20% Similarity=0.178 Sum_probs=50.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
++|||||||||||+||++||+.+ + ..|+.++.+++++.|.|+++++++.+|...
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 94 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEA-Q-VPFLAMAGAEFVEVIGGLGAARVRSLFKEA 94 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH-T-CCEEEEETTTTSSSSTTHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-C-CCEEEechHHHHhhccChhHHHHHHHHHHH
Confidence 49999999999999999999999 3 899999999999999999999999999764
No 113
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.52 E-value=8.3e-08 Score=96.91 Aligned_cols=106 Identities=14% Similarity=0.256 Sum_probs=65.6
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCCcCc
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAP 798 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~L~~ 798 (1167)
+...++|+||+|+|||+|+++++..+... ....+.++...+... +....+.||+|||++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~--g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~ 97 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA--GKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGN 97 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT--TCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccCh
Confidence 45679999999999999999999988542 223444444444332 1123578999999998654
Q ss_pred ccCcccccchHHHHHHHHHHhhcccCCCce-EEEccCCCCCcCC--cccCCCCCccccc
Q 001066 799 CRTRQQDQTHSSVVSTLLALMDGLKSRGSV-VVIGATNRPEAVD--PALRRPGRFDREI 854 (1167)
Q Consensus 799 ~~~~~~~~~~~~vl~~LL~lLd~l~~~~~V-iVIaTTN~~d~Ld--~aLlrpgRF~~~I 854 (1167)
.....|+.+|+.+...+.. +||++...+..+. +.|.+ ||..-+
T Consensus 98 -----------~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~ 143 (149)
T 2kjq_A 98 -----------EEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRT--RMAYCL 143 (149)
T ss_dssp -----------HHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHH--HGGGSE
T ss_pred -----------HHHHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHH--HHhcCe
Confidence 1144566666655444444 5554433454332 66666 664433
No 114
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.51 E-value=8.2e-08 Score=114.94 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=51.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
++|||||||||||+||++||+.+ + ..|+.|+.+++.++|.|+++.+++.+|...
T Consensus 240 ~vLL~GppGtGKT~lAraia~~~-~-~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A 293 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVANET-G-AFFFLINGPEIMSKLAGESESNLRKAFEEA 293 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC-S-SEEEEEEHHHHHTSCTTHHHHHHHHHHHHH
T ss_pred cEEEECcCCCCHHHHHHHHHHHh-C-CCEEEEEchHhhhhhcchhHHHHHHHHHHH
Confidence 49999999999999999999999 3 899999999999999999999999999864
No 115
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.50 E-value=2.2e-06 Score=96.14 Aligned_cols=187 Identities=17% Similarity=0.124 Sum_probs=107.1
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc----
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA---- 759 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~---- 759 (1167)
....++|.+..++.|.+ +.. ..++|+||+|+|||+|++.+++.+.. .+.++.....
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~---~~~~~~~~~~~~~~ 70 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNL---PYIYLDLRKFEERN 70 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTC---CEEEEEGGGGTTCS
T ss_pred CHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCC---CEEEEEchhhcccc
Confidence 34567999998888876 421 47999999999999999999988752 1333333321
Q ss_pred -----ccchhhhch-----------------------------------HHHHHHHHHHHHHhc--CCcEEEEcCCCCcC
Q 001066 760 -----DCLGKYVGD-----------------------------------AERQLRLLFQVAEKC--QPSIIFFDEIDGLA 797 (1167)
Q Consensus 760 -----~lls~~~g~-----------------------------------~e~~L~~lF~~A~~~--~psILfIDEID~L~ 797 (1167)
.++...... ....+..++...... .|.+|||||++.+.
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~ 150 (357)
T 2fna_A 71 YISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELV 150 (357)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhh
Confidence 000000000 001233444444332 38899999999886
Q ss_pred cccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcC---------CcccCCCCCcccccccCCCCHHHHHHHH
Q 001066 798 PCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAV---------DPALRRPGRFDREIYFPLPSMEDRAAIL 868 (1167)
Q Consensus 798 ~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~L---------d~aLlrpgRF~~~I~~~~P~~eER~eIL 868 (1167)
... .. .++..|..+++.. .++.+|.|++....+ ...+. +|+...|.+++++.++..+++
T Consensus 151 ~~~---~~----~~~~~l~~~~~~~---~~~~~i~~g~~~~~l~~~l~~~~~~~~l~--~r~~~~i~l~~l~~~e~~~~l 218 (357)
T 2fna_A 151 KLR---GV----NLLPALAYAYDNL---KRIKFIMSGSEMGLLYDYLRVEDPESPLF--GRAFSTVELKPFSREEAIEFL 218 (357)
T ss_dssp GCT---TC----CCHHHHHHHHHHC---TTEEEEEEESSHHHHHHHTTTTCTTSTTT--TCCCEEEEECCCCHHHHHHHH
T ss_pred ccC---ch----hHHHHHHHHHHcC---CCeEEEEEcCchHHHHHHHhccCCCCccc--cCccceeecCCCCHHHHHHHH
Confidence 410 01 1122222233321 245555555543211 11232 355578899999999999999
Q ss_pred HHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHH
Q 001066 869 SLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQ 905 (1167)
Q Consensus 869 ~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~ 905 (1167)
...+...+....+ ...+...+.| .|..+..++..
T Consensus 219 ~~~~~~~~~~~~~--~~~i~~~t~G-~P~~l~~~~~~ 252 (357)
T 2fna_A 219 RRGFQEADIDFKD--YEVVYEKIGG-IPGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHTCCCCC--HHHHHHHHCS-CHHHHHHHHHH
T ss_pred HHHHHHcCCCCCc--HHHHHHHhCC-CHHHHHHHHHH
Confidence 8876533333332 2777888877 45556655543
No 116
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.49 E-value=9.3e-08 Score=109.76 Aligned_cols=54 Identities=17% Similarity=0.406 Sum_probs=50.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
++|||||||||||+||++||+.+ + .+|+.|+.++++++|.|++++.++.+|...
T Consensus 119 ~vLl~GppGtGKT~la~aia~~~-~-~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a 172 (357)
T 3d8b_A 119 GILLFGPPGTGKTLIGKCIASQS-G-ATFFSISASSLTSKWVGEGEKMVRALFAVA 172 (357)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHT-T-CEEEEEEGGGGCCSSTTHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc-C-CeEEEEehHHhhccccchHHHHHHHHHHHH
Confidence 39999999999999999999999 4 899999999999999999999999999753
No 117
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.48 E-value=9.9e-08 Score=113.73 Aligned_cols=54 Identities=19% Similarity=0.211 Sum_probs=51.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
++||+||||||||+||++||..+ + ..|+.+.+++++++|.|.++++++.+|...
T Consensus 51 gvLL~GppGtGKT~Laraia~~~-~-~~f~~is~~~~~~~~~g~~~~~~r~lf~~A 104 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEA-N-VPFFHISGSDFVELFVGVGAARVRDLFAQA 104 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-T-CCEEEEEGGGTTTCCTTHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc-C-CCeeeCCHHHHHHHHhcccHHHHHHHHHHH
Confidence 39999999999999999999999 3 999999999999999999999999999864
No 118
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.47 E-value=1e-07 Score=105.65 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=50.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
++|||||||||||+||++||+.+ + .+|+.++.+++.++|.|++++.++.+|...
T Consensus 56 ~vll~Gp~GtGKT~la~~la~~~-~-~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 109 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVATEC-S-ATFLNISAASLTSKYVGDGEKLVRALFAVA 109 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHT-T-CEEEEEESTTTSSSSCSCHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh-C-CCeEEeeHHHHhhcccchHHHHHHHHHHHH
Confidence 49999999999999999999999 3 899999999999999999999999999753
No 119
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.44 E-value=1.4e-07 Score=104.86 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=49.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhccc-----ceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIG-----NVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G-----~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
.+|||||||||||+||++||+.+.. +..|+.++.++++++|+|.++++++.+|...
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~ 129 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA 129 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc
Confidence 4999999999999999999998720 1279999999999999999999999999764
No 120
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.43 E-value=1.1e-07 Score=110.31 Aligned_cols=54 Identities=19% Similarity=0.308 Sum_probs=43.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
++|||||||||||+||++||+.+ + .+|+.++.+++.++|+|+++..++.+|...
T Consensus 150 ~vLL~GppGtGKT~la~aia~~~-~-~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a 203 (389)
T 3vfd_A 150 GLLLFGPPGNGKTMLAKAVAAES-N-ATFFNISAASLTSKYVGEGEKLVRALFAVA 203 (389)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHT-T-CEEEEECSCCC-------CHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHhh-c-CcEEEeeHHHhhccccchHHHHHHHHHHHH
Confidence 49999999999999999999999 3 899999999999999999999999999753
No 121
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.42 E-value=1.9e-07 Score=111.88 Aligned_cols=54 Identities=22% Similarity=0.230 Sum_probs=51.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
++|||||||||||+||++||..+ +..|+.++++++.++|.|+.+++++.+|+..
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~--~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a 119 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEA--RVPFITASGSDFVEMFVGVGAARVRDLFETA 119 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHT--TCCEEEEEGGGGTSSCTTHHHHHHHHHTTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCCEEEEehhHHHHhhhhhHHHHHHHHHHHH
Confidence 39999999999999999999998 3899999999999999999999999999975
No 122
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.41 E-value=1.8e-07 Score=105.85 Aligned_cols=122 Identities=19% Similarity=0.191 Sum_probs=68.9
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCC
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDG 795 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~ 795 (1167)
|+++...+||+||||+|||+||.++|...+. .+.|+.....+.+..+....+..+..+++.+.... +||||+|+.
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~---~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~a 193 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGG---KDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKN 193 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHT---TSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTT
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCC---CEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccc
Confidence 4455566899999999999999999987332 24455552222233333455666666666665544 999999999
Q ss_pred cCcccCcc-cccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCCcc
Q 001066 796 LAPCRTRQ-QDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPA 843 (1167)
Q Consensus 796 L~~~~~~~-~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~a 843 (1167)
+....... ........+..++..|..+....++.+|+++| +...+++
T Consensus 194 L~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~dea 241 (331)
T 2vhj_A 194 VIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDK 241 (331)
T ss_dssp TC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSS
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-Ccccchh
Confidence 86532210 00011233344444444433334567777877 3333433
No 123
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.38 E-value=2.1e-07 Score=109.70 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=47.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhh-hcccc-hHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQ-EGRGD-LVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~-kyiGe-sE~nvr~iF~~~ 1164 (1167)
+|||+||||||||+||++||+.+ + ..|+.+|++.+.+ .|+|+ +|+.++++|...
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l-~-~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a 107 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLA-N-APFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT-T-CCEEEEEGGGGC----CCCCTHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHc-C-CCceeecchhhcccceeeccHHHHHHHHHHHH
Confidence 39999999999999999999999 4 9999999999999 59995 999999999864
No 124
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.38 E-value=3.2e-07 Score=99.53 Aligned_cols=54 Identities=22% Similarity=0.230 Sum_probs=50.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
++||+||||||||+||++||..+ +..++.++++.+.++|.|+.+++++.+|+..
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~--~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 104 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEA--RVPFITASGSDFVEMFVGVGAARVRDLFETA 104 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT--TCCEEEEEHHHHHHSCTTHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCCEEEeeHHHHHHHHhhHHHHHHHHHHHHH
Confidence 39999999999999999999988 3899999999999999999999999999975
No 125
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.37 E-value=5.3e-07 Score=81.11 Aligned_cols=73 Identities=30% Similarity=0.476 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhccccccC
Q 001066 857 PLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQEILSAAAEKAFCSKRVTL 936 (1167)
Q Consensus 857 ~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~~di~~~~e~~~~~~~~~~l 936 (1167)
|+|+.++|.+||+.++..+... .+.++..||..|.||+|+||.++|+.|++.|++++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~-~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~--------------------- 58 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR--------------------- 58 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEEC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC---------------------
T ss_pred CcCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC---------------------
Confidence 6899999999999999887653 567899999999999999999999999999988742
Q ss_pred CccccCHHHHHHHhhcC
Q 001066 937 PSFAVEERDWLEALSCS 953 (1167)
Q Consensus 937 ~~i~It~~D~~~AL~~~ 953 (1167)
..|+..||..|+.++
T Consensus 59 --~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 59 --VHVTQEDFEMAVAKV 73 (78)
T ss_dssp --SEECHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHH
Confidence 358899999998865
No 126
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.37 E-value=3.2e-07 Score=84.46 Aligned_cols=77 Identities=27% Similarity=0.414 Sum_probs=66.6
Q ss_pred ccCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhccccc
Q 001066 855 YFPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQEILSAAAEKAFCSKRV 934 (1167)
Q Consensus 855 ~~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~~di~~~~e~~~~~~~~~ 934 (1167)
+-.+|+.++|.+||+.++..+... .+.++..||..|.||+++||.+||++|++.|+++.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~-------------------- 65 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-------------------- 65 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEEC-TTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT--------------------
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc--------------------
Confidence 456899999999999999987654 46789999999999999999999999999998875
Q ss_pred cCCccccCHHHHHHHhhcCCC
Q 001066 935 TLPSFAVEERDWLEALSCSPP 955 (1167)
Q Consensus 935 ~l~~i~It~~D~~~AL~~~~P 955 (1167)
...|+..||..|+.+++|
T Consensus 66 ---~~~I~~~df~~Al~~v~p 83 (86)
T 2krk_A 66 ---RVHVTQEDFEMAVAKVMQ 83 (86)
T ss_dssp ---CSEECHHHHHHHHHHHHC
T ss_pred ---CCCCCHHHHHHHHHHHcc
Confidence 136889999999987764
No 127
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.31 E-value=3.4e-08 Score=107.84 Aligned_cols=53 Identities=21% Similarity=0.200 Sum_probs=49.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
+|||||||||||+||++||+.+ + ..|+.++.+.+.++|.|+++++++.+|...
T Consensus 47 vll~G~~GtGKT~la~~la~~~-~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a 99 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA-H-VPFFSMGGSSFIEMFVGLGASRVRDLFETA 99 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH-T-CCCCCCCSCTTTTSCSSSCSSSSSTTHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh-C-CCEEEechHHHHHhhcchHHHHHHHHHHHH
Confidence 9999999999999999999999 3 899999999999999999999888888753
No 128
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.29 E-value=6e-07 Score=93.76 Aligned_cols=74 Identities=16% Similarity=0.307 Sum_probs=45.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHH-HHHHHHHHHHHhcCCcEEEEcCCCCcC
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAE-RQLRLLFQVAEKCQPSIIFFDEIDGLA 797 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e-~~L~~lF~~A~~~~psILfIDEID~L~ 797 (1167)
+.+++|+||||||||+||++|+..+..... .++.+.+..++..+..... ..+..++.... .+.+|||||++...
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~~ 128 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNV--SSLIVYVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAEA 128 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTC--CEEEEEHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC-
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCC--eEEEEEhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCc
Confidence 378999999999999999999999865433 3444444444332221110 01122233322 34699999997654
No 129
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.27 E-value=5.5e-07 Score=103.26 Aligned_cols=54 Identities=26% Similarity=0.341 Sum_probs=48.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhh-cccch-HHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQE-GRGDL-VQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~k-yiGes-E~nvr~iF~~~ 1164 (1167)
.+||+||||||||+||++||+.+ + ..|+.++++++... |+|++ +..++.+|...
T Consensus 53 ~vll~GppGtGKT~la~~ia~~~-~-~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~ 108 (363)
T 3hws_A 53 NILLIGPTGSGKTLLAETLARLL-D-VPFTMADATTLTEAGYVGEDVENIIQKLLQKC 108 (363)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT-T-CCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHc-C-CCEEEechHHhcccccccccHHHHHHHHHHHh
Confidence 39999999999999999999999 3 89999999999965 99998 67788888765
No 130
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.25 E-value=9.4e-07 Score=97.46 Aligned_cols=54 Identities=22% Similarity=0.230 Sum_probs=50.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
++||+||||||||+||++||..+ +..++.++++.+.+++.|+.+++++.+|+..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~--~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 128 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA--RVPFITASGSDFVEMFVGVGAARVRDLFETA 128 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT--TCCEEEEEHHHHHHSTTTHHHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHHc--CCCEEEecHHHHHHHHhhHHHHHHHHHHHHH
Confidence 39999999999999999999988 3899999999999999999999999999975
No 131
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.19 E-value=2.1e-06 Score=79.17 Aligned_cols=74 Identities=24% Similarity=0.408 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhccccccCCcc
Q 001066 860 SMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQEILSAAAEKAFCSKRVTLPSF 939 (1167)
Q Consensus 860 ~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~~di~~~~e~~~~~~~~~~l~~i 939 (1167)
+.++|.+||+.++...+.. ++.++..||..|.||+|+||.++|++|++.|+++.. .
T Consensus 2 d~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~-----------------------~ 57 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR-----------------------K 57 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBC-SCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC-----------------------S
T ss_pred CHHHHHHHHHHHHCCCCCC-CccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc-----------------------c
Confidence 5679999999999987764 567899999999999999999999999999988742 2
Q ss_pred ccCHHHHHHHhhcCCCCC
Q 001066 940 AVEERDWLEALSCSPPPC 957 (1167)
Q Consensus 940 ~It~~D~~~AL~~~~P~~ 957 (1167)
.|+..||..|+.++.+..
T Consensus 58 ~i~~~df~~Al~~v~~~~ 75 (88)
T 3vlf_B 58 VATEKDFLKAVDKVISGY 75 (88)
T ss_dssp SBCHHHHHHHHHHHTC--
T ss_pred cCCHHHHHHHHHHHhcCc
Confidence 489999999999887644
No 132
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.12 E-value=2.4e-06 Score=77.70 Aligned_cols=75 Identities=20% Similarity=0.297 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhccccccCCcc
Q 001066 860 SMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQEILSAAAEKAFCSKRVTLPSF 939 (1167)
Q Consensus 860 ~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~~di~~~~e~~~~~~~~~~l~~i 939 (1167)
+.++|.+||+.++..++.. ++.++..||..|.||+|+||.++|+.|++.|+++.. .
T Consensus 2 d~~~R~~Il~~~l~~~~~~-~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~-----------------------~ 57 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLS-EEVDLEDYVARPDKISGADINSICQESGMLAVRENR-----------------------Y 57 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBC-TTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCC-----------------------S
T ss_pred CHHHHHHHHHHHhCCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-----------------------C
Confidence 6789999999999987654 567899999999999999999999999998887641 4
Q ss_pred ccCHHHHHHHhhcCCCCCC
Q 001066 940 AVEERDWLEALSCSPPPCS 958 (1167)
Q Consensus 940 ~It~~D~~~AL~~~~P~~S 958 (1167)
.|+..||..|+.+++|+.+
T Consensus 58 ~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 58 IVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp SBCHHHHHHHHHHHCC---
T ss_pred CcCHHHHHHHHHHHccCch
Confidence 6899999999999988664
No 133
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.09 E-value=2.2e-05 Score=89.08 Aligned_cols=164 Identities=11% Similarity=0.071 Sum_probs=108.2
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcCC-CceEEEEecccccchhhhchHHHHHHHHHHHHH----hcCCcEEEEcCC
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARGD-KRIAYFARKGADCLGKYVGDAERQLRLLFQVAE----KCQPSIIFFDEI 793 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~~-~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~----~~~psILfIDEI 793 (1167)
..+.+||+||+|.||++.++.|+..+.... .....+.++.. ..++.++..+. .....||+|||+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~plf~~~kvvii~~~ 85 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN-----------TDWNAIFSLCQAMSLFASRQTLLLLLP 85 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT-----------CCHHHHHHHHHHHHHCCSCEEEEEECC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC-----------CCHHHHHHHhcCcCCccCCeEEEEECC
Confidence 346799999999999999999988764321 12222333211 11233333332 245679999999
Q ss_pred CC-cCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCC-----CCcCCcccCCCCCcccccccCCCCHHHHHHH
Q 001066 794 DG-LAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNR-----PEAVDPALRRPGRFDREIYFPLPSMEDRAAI 867 (1167)
Q Consensus 794 D~-L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~-----~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eI 867 (1167)
+. +.. ...+.|+..++.... ..++|+.+++. ...+.+++.+ |. ..+.|.+++..+....
T Consensus 86 ~~kl~~-----------~~~~aLl~~le~p~~-~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~ 150 (343)
T 1jr3_D 86 ENGPNA-----------AINEQLLTLTGLLHD-DLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRW 150 (343)
T ss_dssp SSCCCT-----------THHHHHHHHHTTCBT-TEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHH
T ss_pred CCCCCh-----------HHHHHHHHHHhcCCC-CeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHH
Confidence 98 653 345678888876433 33444444432 2345667777 66 6889999999999999
Q ss_pred HHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHH
Q 001066 868 LSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAII 909 (1167)
Q Consensus 868 L~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~ 909 (1167)
++..+...+..+++..+..|+..+.| ..+++.+.+.....+
T Consensus 151 l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~ 191 (343)
T 1jr3_D 151 VAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLL 191 (343)
T ss_dssp HHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHh
Confidence 99999888888889999999988776 444444444444443
No 134
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.08 E-value=1.7e-06 Score=97.56 Aligned_cols=74 Identities=12% Similarity=0.202 Sum_probs=44.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhh-cCCCceEEEEecccccchhhhchH-HHHHHHHHHHHHhcCCcEEEEcCCCCcC
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCA-RGDKRIAYFARKGADCLGKYVGDA-ERQLRLLFQVAEKCQPSIIFFDEIDGLA 797 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~-~~~~~i~~~~l~~~~lls~~~g~~-e~~L~~lF~~A~~~~psILfIDEID~L~ 797 (1167)
..++||+||||||||+||.+||..+. .....+.++ ....++..+.... ...+..++... ..+.+||||||+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~--~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL--HFPSFAIDVKNAISNGSVKEEIDAV--KNVPVLILDDIGAEQ 227 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE--EHHHHHHHHHCCCC----CCTTHHH--HTSSEEEEETCCC--
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE--EHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC
Confidence 57899999999999999999999887 554434333 3344433222111 01111122222 245799999997654
No 135
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.06 E-value=4.2e-06 Score=84.62 Aligned_cols=55 Identities=20% Similarity=0.400 Sum_probs=48.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhccc--------ceEEEEeehhhHh--hhcccchHHHHHHHhhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIG--------NVEIQKVDLATIS--QEGRGDLVQGLTLLLSM 1163 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G--------~L~fisvD~sell--~kyiGesE~nvr~iF~~ 1163 (1167)
.+||+||||||||+||+++|+.+.. ...++.++++.++ ..+.|+.++.++++|..
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLND 109 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHH
Confidence 4999999999999999999998720 2789999999998 68899999999999874
No 136
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.06 E-value=7.4e-06 Score=110.75 Aligned_cols=120 Identities=21% Similarity=0.302 Sum_probs=82.3
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc--ccchhhhc------------hHHHHHHHHHHHHH
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA--DCLGKYVG------------DAERQLRLLFQVAE 781 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~--~lls~~~g------------~~e~~L~~lF~~A~ 781 (1167)
|+++..+++|+||||||||+||.+++.+.......+.|+..... .+.....| ..+..++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 37788999999999999999999999988766566667665321 11111112 34567777888888
Q ss_pred hcCCcEEEEcCCCCcCcccC---ccc-ccc--hHHHHHHHHHHhhcccCCCceEEEccCCC
Q 001066 782 KCQPSIIFFDEIDGLAPCRT---RQQ-DQT--HSSVVSTLLALMDGLKSRGSVVVIGATNR 836 (1167)
Q Consensus 782 ~~~psILfIDEID~L~~~~~---~~~-~~~--~~~vl~~LL~lLd~l~~~~~ViVIaTTN~ 836 (1167)
...|++||||+|+.+.+... ..+ ... ..+++..++..|.......+++|| +||.
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI-~tNq 1562 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQ 1562 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEE-EEEC
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEE-EEcc
Confidence 88999999999998876321 111 112 356777777777776666667766 4443
No 137
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.01 E-value=4.5e-06 Score=84.48 Aligned_cols=56 Identities=21% Similarity=0.418 Sum_probs=48.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhccc--------ceEEEEeehhhHh--hhcccchHHHHHHHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIG--------NVEIQKVDLATIS--QEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G--------~L~fisvD~sell--~kyiGesE~nvr~iF~~~ 1164 (1167)
.+||+||||||||+||+++|+.+.. ...++.++++.++ ..|.|..+..++++|..+
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEV 110 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHH
Confidence 4999999999999999999998721 3789999999998 568899999999988653
No 138
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.00 E-value=4.9e-06 Score=91.25 Aligned_cols=50 Identities=24% Similarity=0.256 Sum_probs=41.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchH----HHHHHHhhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLV----QGLTLLLSM 1163 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE----~nvr~iF~~ 1163 (1167)
.+|||||||||||+||++||+.+ + ..|+.++.++ .++|.++ ..++++|..
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~~-~-~~~~~i~~~~---~~~g~~~~~~~~~~~~~~~~ 119 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEES-N-FPFIKICSPD---KMIGFSETAKCQAMKKIFDD 119 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-T-CSEEEEECGG---GCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh-C-CCEEEEeCHH---HhcCCchHHHHHHHHHHHHH
Confidence 49999999999999999999998 3 8999998886 4455544 678888875
No 139
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.00 E-value=4.4e-06 Score=92.36 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=45.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhh-hcccch-HHHHHHHhhh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQ-EGRGDL-VQGLTLLLSM 1163 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~-kyiGes-E~nvr~iF~~ 1163 (1167)
+|||||||||||+||++||+.+ + ..|+.++++++.. .|+|.. +..++.+|..
T Consensus 53 vll~G~~GtGKT~la~~la~~l-~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (310)
T 1ofh_A 53 ILMIGPTGVGKTEIARRLAKLA-N-APFIKVEATKFTEVGYVGKEVDSIIRDLTDS 106 (310)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH-T-CCEEEEEGGGGSSCCSGGGSTTHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh-C-CCEEEEcchhcccCCccCccHHHHHHHHHHH
Confidence 9999999999999999999999 3 8999999999987 788854 5667777753
No 140
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.98 E-value=5e-06 Score=95.60 Aligned_cols=53 Identities=26% Similarity=0.364 Sum_probs=40.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHh-hhcccch-HHHHHHHhhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATIS-QEGRGDL-VQGLTLLLSM 1163 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell-~kyiGes-E~nvr~iF~~ 1163 (1167)
.+||+||||||||+||++||+.+ + ..|+.++++.+. +.|.|+. +..++++|..
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~l-~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 128 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKHL-D-IPIAISDATSLTEAGYVGEDVENILTRLLQA 128 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT-T-CCEEEEEGGGCC--------CTHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-C-CCEEEecchhhhhcCcCCccHHHHHHHHHhh
Confidence 39999999999999999999999 4 899999999987 6788886 5667777653
No 141
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.97 E-value=5.8e-06 Score=94.14 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=47.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSM 1163 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~ 1163 (1167)
.+|||||||||||+||++||+.+..+..|+.+..+++++.|.+.++ .+.++|.+
T Consensus 72 ~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 125 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTE-ALTQAFRR 125 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHH-HHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhH-HHHHHHHH
Confidence 4999999999999999999999953468999999999999999998 47777765
No 142
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.93 E-value=5.8e-06 Score=87.60 Aligned_cols=130 Identities=15% Similarity=0.196 Sum_probs=72.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhh-----cCCCceEEEEecccccchhhh-------------ch--HHHHHHHHHHHH
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCA-----RGDKRIAYFARKGADCLGKYV-------------GD--AERQLRLLFQVA 780 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~-----~~~~~i~~~~l~~~~lls~~~-------------g~--~e~~L~~lF~~A 780 (1167)
..+|++|+||+|||++|..++.... .... .+++..+...+..... .+ ....+..++..+
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~-r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGI-RRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSC-CCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCc-eEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc
Confidence 4688999999999999988654432 1110 1222222222211110 00 001122221111
Q ss_pred HhcCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCC
Q 001066 781 EKCQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPS 860 (1167)
Q Consensus 781 ~~~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~ 860 (1167)
....+||||||++.+.+.+...... . .++..|.... ...+-||.+|+.+..|+.+|+. |+...++++.|.
T Consensus 85 -~~~~~vliIDEAq~l~~~~~~~~e~--~----rll~~l~~~r-~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~ 154 (199)
T 2r2a_A 85 -ENIGSIVIVDEAQDVWPARSAGSKI--P----ENVQWLNTHR-HQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNK 154 (199)
T ss_dssp -GGTTCEEEETTGGGTSBCCCTTCCC--C----HHHHGGGGTT-TTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECS
T ss_pred -ccCceEEEEEChhhhccCccccchh--H----HHHHHHHhcC-cCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcc
Confidence 2357899999999997533211111 1 2444444322 3345667788889999999988 998888887654
Q ss_pred H
Q 001066 861 M 861 (1167)
Q Consensus 861 ~ 861 (1167)
.
T Consensus 155 ~ 155 (199)
T 2r2a_A 155 M 155 (199)
T ss_dssp S
T ss_pred c
Confidence 3
No 143
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.93 E-value=1.2e-05 Score=93.30 Aligned_cols=119 Identities=19% Similarity=0.208 Sum_probs=73.3
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchhhhchHHHHHHHHHHHHHhcCCcEEEEcCCCC
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDG 795 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~~~g~~e~~L~~lF~~A~~~~psILfIDEID~ 795 (1167)
+++++..++|+||||+|||||+++|+..+. ..++.+..... . ....+. ...+..++|+|+++.
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~-----g~~~~~~~~~~--~----~~~~lg------~~~q~~~~l~dd~~~ 227 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCG-----GKALNVNLPLD--R----LNFELG------VAIDQFLVVFEDVKG 227 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC-----CEEECCSSCTT--T----HHHHHG------GGTTCSCEEETTCCC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcC-----CcEEEEeccch--h----HHHHHH------HhcchhHHHHHHHHH
Confidence 667778899999999999999999998764 23333222110 0 001111 223457789999998
Q ss_pred cCc-ccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCC
Q 001066 796 LAP-CRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPL 858 (1167)
Q Consensus 796 L~~-~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~ 858 (1167)
+.. .+.-.... .......+.+.+++ .+.|+++||+++.+ +++.+++|++..+.+..
T Consensus 228 ~~~~~r~l~~~~-~~~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 228 TGGESRDLPSGQ-GINNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp STTTTTTCCCCS-HHHHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHHHHhhccccC-cchHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 764 11110101 00012334444443 35677789999999 78888999987777654
No 144
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.85 E-value=4.7e-06 Score=99.23 Aligned_cols=54 Identities=19% Similarity=0.361 Sum_probs=38.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---------ccceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1107 GFRVLISGSPGSGQRHLAACLLHSF---------IGNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1107 rp~iLf~GPpGtGKT~LAkaLA~~l---------~G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
.+.+||+||||||||+||++||+.+ .+ ..|+.+|++ .+|.|+.|..++.+|...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~-~~~~~l~~~---~~~~g~~e~~~~~~~~~~ 263 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRD-KRVMTLDMG---TKYRGEFEDRLKKVMDEI 263 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSS-CCEECC-------------CTTHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcC-CeEEEeeCC---ccccchHHHHHHHHHHHH
Confidence 3469999999999999999999986 23 789999999 899999999999999754
No 145
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.84 E-value=2e-05 Score=83.79 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=25.7
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 717 LTPPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 717 l~~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
++..+++||+||||||||++|.+||+.+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45567899999999999999999999885
No 146
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.74 E-value=1.5e-05 Score=96.65 Aligned_cols=55 Identities=16% Similarity=0.278 Sum_probs=39.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhh---------hcccchHHHHHHHhhhc
Q 001066 1108 FRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQ---------EGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1108 p~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~---------kyiGesE~nvr~iF~~~ 1164 (1167)
+.+||+||||||||+||++||..+ +..|+.|.++.+.. +|+|.....++++|...
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~l--~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a 172 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKSL--GRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKA 172 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHHH--TCEEEEECCCC--------------------CHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc--CCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHh
Confidence 349999999999999999999999 38999998877654 89999999999998765
No 147
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.67 E-value=0.00028 Score=73.10 Aligned_cols=24 Identities=29% Similarity=0.707 Sum_probs=21.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
.+.|.||+|+|||||++.|+..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999875
No 148
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.63 E-value=3.3e-05 Score=86.79 Aligned_cols=53 Identities=19% Similarity=0.185 Sum_probs=43.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhccc-ceEEEEeehhhHhhhcccchHHHHHHHh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIG-NVEIQKVDLATISQEGRGDLVQGLTLLL 1161 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G-~L~fisvD~sell~kyiGesE~nvr~iF 1161 (1167)
.+|||||||||||+||++|++.+.. ...|+.++.+++++.+++....+....|
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 92 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEF 92 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHH
Confidence 4999999999999999999998720 1679999999999999887766544433
No 149
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.60 E-value=1.2e-05 Score=80.01 Aligned_cols=39 Identities=13% Similarity=0.042 Sum_probs=33.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhc
Q 001066 1107 GFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEG 1149 (1167)
Q Consensus 1107 rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~ky 1149 (1167)
.| +||+||||||||+||++|++.. . .|+.++.+++...+
T Consensus 28 ~~-vll~G~~GtGKt~lA~~i~~~~--~-~~~~~~~~~~~~~~ 66 (143)
T 3co5_A 28 SP-VFLTGEAGSPFETVARYFHKNG--T-PWVSPARVEYLIDM 66 (143)
T ss_dssp SC-EEEEEETTCCHHHHHGGGCCTT--S-CEECCSSTTHHHHC
T ss_pred Cc-EEEECCCCccHHHHHHHHHHhC--C-CeEEechhhCChHh
Confidence 44 9999999999999999999977 3 89999998876655
No 150
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.57 E-value=4.2e-05 Score=86.68 Aligned_cols=57 Identities=11% Similarity=0.116 Sum_probs=44.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhccc--------ceEEEEeehhhHh----------hhcc------cchHHHHHHHhh
Q 001066 1107 GFRVLISGSPGSGQRHLAACLLHSFIG--------NVEIQKVDLATIS----------QEGR------GDLVQGLTLLLS 1162 (1167)
Q Consensus 1107 rp~iLf~GPpGtGKT~LAkaLA~~l~G--------~L~fisvD~sell----------~kyi------GesE~nvr~iF~ 1162 (1167)
.+.+|||||||||||.+|++++++|.. ++.++.|.+..+. ++.. |++.+.|+++|.
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~ 124 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYIT 124 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence 346999999999999999999999830 2689999976543 3333 457889999998
Q ss_pred h
Q 001066 1163 M 1163 (1167)
Q Consensus 1163 ~ 1163 (1167)
+
T Consensus 125 ~ 125 (318)
T 3te6_A 125 N 125 (318)
T ss_dssp H
T ss_pred H
Confidence 5
No 151
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.55 E-value=0.00012 Score=80.86 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=24.3
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
++.++|+|+||||||||++|.+||+.+.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4456899999999999999999998753
No 152
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.52 E-value=0.0012 Score=79.99 Aligned_cols=180 Identities=13% Similarity=0.101 Sum_probs=97.8
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHh---hcCCC-ceEEEEecccc
Q 001066 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSC---ARGDK-RIAYFARKGAD 760 (1167)
Q Consensus 685 ~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l---~~~~~-~i~~~~l~~~~ 760 (1167)
...++|.+..+..|.+.+... ....+-|+|+||+|+|||+||..++... ...+. .+.++.+....
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~ 191 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 191 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC
T ss_pred CCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc
Confidence 345799999999999887431 1224568999999999999999997543 11121 23334432211
Q ss_pred ---cchhh------h-----------chHHHHHHHHHHHHHh-cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHh
Q 001066 761 ---CLGKY------V-----------GDAERQLRLLFQVAEK-CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALM 819 (1167)
Q Consensus 761 ---lls~~------~-----------g~~e~~L~~lF~~A~~-~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lL 819 (1167)
++..+ . .........+...... ..+.+|+||+++... . +
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~-----------------~---l 251 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW-----------------V---L 251 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-----------------H---H
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-----------------H---H
Confidence 11110 0 0111122222222222 268999999997421 1 2
Q ss_pred hcccCCCceEEEccCCCCCcCCcccCCCCCcccccc-cCCCCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHH
Q 001066 820 DGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIY-FPLPSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGAD 898 (1167)
Q Consensus 820 d~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~-~~~P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aD 898 (1167)
+.+ ..+..||.||....... .+. +.. ..+. +...+.++..++|...+.... .........|+..+.| .|-.
T Consensus 252 ~~l--~~~~~ilvTsR~~~~~~-~~~--~~~-~~v~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~i~~~~~G-~PLa 323 (591)
T 1z6t_A 252 KAF--DSQCQILLTTRDKSVTD-SVM--GPK-YVVPVESSLGKEKGLEILSLFVNMKK-ADLPEQAHSIIKECKG-SPLV 323 (591)
T ss_dssp HTT--CSSCEEEEEESCGGGGT-TCC--SCE-EEEECCSSCCHHHHHHHHHHHHTSCG-GGSCTHHHHHHHHHTT-CHHH
T ss_pred HHh--cCCCeEEEECCCcHHHH-hcC--CCc-eEeecCCCCCHHHHHHHHHHHhCCCc-ccccHHHHHHHHHhCC-CcHH
Confidence 222 22345555776543211 111 111 2222 246789999999988775311 1123567888898887 4555
Q ss_pred HHHHH
Q 001066 899 LQALC 903 (1167)
Q Consensus 899 L~~Lv 903 (1167)
|..+.
T Consensus 324 l~~~a 328 (591)
T 1z6t_A 324 VSLIG 328 (591)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 153
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.52 E-value=0.00032 Score=80.62 Aligned_cols=118 Identities=20% Similarity=0.248 Sum_probs=67.5
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccc--------------cchhhhchHHHHHHHHHHHHH
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGAD--------------CLGKYVGDAERQLRLLFQVAE 781 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~--------------lls~~~g~~e~~L~~lF~~A~ 781 (1167)
|+++..-++|+||||+|||+|+..+|..+......+.|+...... +.-......+..+..+.....
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 566777899999999999999999998876443344444332110 000001122333333333334
Q ss_pred hcCCcEEEEcCCCCcCc-ccCc--cccc---chHHHHHHHHHHhhcccCCCceEEEcc
Q 001066 782 KCQPSIIFFDEIDGLAP-CRTR--QQDQ---THSSVVSTLLALMDGLKSRGSVVVIGA 833 (1167)
Q Consensus 782 ~~~psILfIDEID~L~~-~~~~--~~~~---~~~~vl~~LL~lLd~l~~~~~ViVIaT 833 (1167)
...+.+|+||.+..+.+ ..-. .+.. ...+.+..++..|..+....++.||.+
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 46789999999998875 1111 1111 224556666666666544445555544
No 154
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.51 E-value=3e-05 Score=70.39 Aligned_cols=69 Identities=19% Similarity=0.273 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhhccccccCCcccc
Q 001066 862 EDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGADLQALCTQAAIIALKRNFPLQEILSAAAEKAFCSKRVTLPSFAV 941 (1167)
Q Consensus 862 eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aDL~~Lv~~A~~~A~~R~i~~~di~~~~e~~~~~~~~~~l~~i~I 941 (1167)
++|.+||+.++..++.. .+.++..||..|.||+|+||.++|+.|++.|+++.. ..|
T Consensus 1 ~~R~~Il~~~l~~~~~~-~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~-----------------------~~i 56 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR-----------------------YVI 56 (82)
T ss_dssp -------------CEEC-TTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTC-----------------------SEE
T ss_pred CHHHHHHHHHHcCCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-----------------------CCc
Confidence 46899999999876643 456788999999999999999999999999988742 358
Q ss_pred CHHHHHHHhhcCC
Q 001066 942 EERDWLEALSCSP 954 (1167)
Q Consensus 942 t~~D~~~AL~~~~ 954 (1167)
+..||..|+.++.
T Consensus 57 ~~~df~~Al~~v~ 69 (82)
T 2dzn_B 57 LQSDLEEAYATQV 69 (82)
T ss_dssp CHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHH
Confidence 8999999999874
No 155
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.48 E-value=0.00018 Score=75.69 Aligned_cols=40 Identities=30% Similarity=0.454 Sum_probs=29.1
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEE
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFA 755 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~ 755 (1167)
++++...++|+||+|+|||+|++.++..+......+.++.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4556677899999999999999999976543333344443
No 156
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.44 E-value=4.6e-05 Score=75.87 Aligned_cols=40 Identities=23% Similarity=0.109 Sum_probs=31.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcc-cceEEEEeehhhHhhh
Q 001066 1107 GFRVLISGSPGSGQRHLAACLLHSFI-GNVEIQKVDLATISQE 1148 (1167)
Q Consensus 1107 rp~iLf~GPpGtGKT~LAkaLA~~l~-G~L~fisvD~sell~k 1148 (1167)
.| +||+||||||||+||++|++... .+..|+ ++.+.+...
T Consensus 25 ~~-vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~ 65 (145)
T 3n70_A 25 IA-VWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA 65 (145)
T ss_dssp SC-EEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS
T ss_pred CC-EEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc
Confidence 44 99999999999999999999651 025788 988877654
No 157
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.37 E-value=0.0004 Score=73.86 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=25.2
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
|+++...++|+||||+|||+|+..+|...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46667789999999999999999999853
No 158
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.37 E-value=0.0016 Score=78.85 Aligned_cols=178 Identities=12% Similarity=0.076 Sum_probs=97.7
Q ss_pred cChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHH----HhhcCCCceEEEEecccc---c
Q 001066 689 AGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIG----SCARGDKRIAYFARKGAD---C 761 (1167)
Q Consensus 689 ~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~----~l~~~~~~i~~~~l~~~~---l 761 (1167)
+|.+..++.|.+++... +-.....|.|+|+.|+|||+||+.+++ .....+....++.+.... .
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 59999999999887431 112245688999999999999999996 343333333444443321 1
Q ss_pred ---chhhh---ch-------------HHHHHHHHHHHHHhcC-CcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhc
Q 001066 762 ---LGKYV---GD-------------AERQLRLLFQVAEKCQ-PSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDG 821 (1167)
Q Consensus 762 ---ls~~~---g~-------------~e~~L~~lF~~A~~~~-psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~ 821 (1167)
+.... +. ....+...+....... ..+|+||+++... .+ .+. .
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~------------~~--~~~----~ 262 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE------------TI--RWA----Q 262 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH------------HH--HHH----H
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch------------hh--ccc----c
Confidence 00000 00 0111223333333343 7899999998532 11 111 1
Q ss_pred ccCCCceEEEccCCCCCcCCcccCCCCCcccccccCCCCHHHHHHHHHHhhccCCC-CCChhHHHHHHHHccCCcHHHHH
Q 001066 822 LKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSMEDRAAILSLHTERWPK-PVTGSLLKWIAARTAGFAGADLQ 900 (1167)
Q Consensus 822 l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~P~~eER~eIL~~~l~~~~~-~l~d~~L~~LA~~t~G~s~aDL~ 900 (1167)
. .+..||.||..... ...+. .....+.++..+.++-.++|..++..... .........|++.+.| .|-+|+
T Consensus 263 ~---~gs~ilvTTR~~~v-~~~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~G-lPLAl~ 334 (549)
T 2a5y_B 263 E---LRLRCLVTTRDVEI-SNAAS---QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSG-NPATLM 334 (549)
T ss_dssp H---TTCEEEEEESBGGG-GGGCC---SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTT-CHHHHH
T ss_pred c---CCCEEEEEcCCHHH-HHHcC---CCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCC-ChHHHH
Confidence 1 23345557765322 11111 12356888999999999999987543221 1011245667777765 455554
Q ss_pred HH
Q 001066 901 AL 902 (1167)
Q Consensus 901 ~L 902 (1167)
.+
T Consensus 335 ~~ 336 (549)
T 2a5y_B 335 MF 336 (549)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 159
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.36 E-value=0.00064 Score=78.44 Aligned_cols=119 Identities=16% Similarity=0.243 Sum_probs=66.4
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccc--cchhh------------hchHHHHHHHHHHHHH
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGAD--CLGKY------------VGDAERQLRLLFQVAE 781 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~--lls~~------------~g~~e~~L~~lF~~A~ 781 (1167)
|+++...++|+||||+|||+||..+|..+......+.|+...... ..... ....+..+..+....+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 566777899999999999999999988876544455566543211 00000 0112333333323333
Q ss_pred hcCCcEEEEcCCCCcCcccCcc---ccc---chHHHHHHHHHHhhcccCCCceEEEccC
Q 001066 782 KCQPSIIFFDEIDGLAPCRTRQ---QDQ---THSSVVSTLLALMDGLKSRGSVVVIGAT 834 (1167)
Q Consensus 782 ~~~psILfIDEID~L~~~~~~~---~~~---~~~~vl~~LL~lLd~l~~~~~ViVIaTT 834 (1167)
...+.+||||.+..+.+..... ++. ...+.+..++..|..+....++.||++.
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 4578999999999987421110 110 1223344555555544444455666543
No 160
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.34 E-value=0.0037 Score=81.67 Aligned_cols=179 Identities=12% Similarity=0.082 Sum_probs=100.6
Q ss_pred cccccChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHh---hcCCC-ceEEEEecccc
Q 001066 685 FESVAGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSC---ARGDK-RIAYFARKGAD 760 (1167)
Q Consensus 685 ~ddL~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l---~~~~~-~i~~~~l~~~~ 760 (1167)
...++|.+..++.|.+.+... -...+-|.|+|+.|+|||+||+.+++.. ...+. .+-++.+....
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD 191 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC
T ss_pred CceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC
Confidence 345799999999999987531 1223558899999999999999987763 21122 22244432211
Q ss_pred c---chhh------h----------chHHHHHHHHHHHHHh--cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHh
Q 001066 761 C---LGKY------V----------GDAERQLRLLFQVAEK--CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALM 819 (1167)
Q Consensus 761 l---ls~~------~----------g~~e~~L~~lF~~A~~--~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lL 819 (1167)
- .... + ......+...+..... ..+.+|+||+++... .+
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--------------------~~ 251 (1249)
T 3sfz_A 192 KSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--------------------VL 251 (1249)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--------------------HH
T ss_pred chHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--------------------HH
Confidence 0 0000 0 0011112222222222 237899999998431 12
Q ss_pred hcccCCCceEEEccCCCCCcCCcccCCCCCcccccccCC-CCHHHHHHHHHHhhccCCCCCChhHHHHHHHHccCCcHHH
Q 001066 820 DGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPL-PSMEDRAAILSLHTERWPKPVTGSLLKWIAARTAGFAGAD 898 (1167)
Q Consensus 820 d~l~~~~~ViVIaTTN~~d~Ld~aLlrpgRF~~~I~~~~-P~~eER~eIL~~~l~~~~~~l~d~~L~~LA~~t~G~s~aD 898 (1167)
..+. .+..||.||.......... .....+.++. ++.++..++|..++...... .......|++.+.| .|-+
T Consensus 252 ~~~~--~~~~ilvTtR~~~~~~~~~----~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~-~~~~~~~i~~~~~g-lPLa 323 (1249)
T 3sfz_A 252 KAFD--NQCQILLTTRDKSVTDSVM----GPKHVVPVESGLGREKGLEILSLFVNMKKED-LPAEAHSIIKECKG-SPLV 323 (1249)
T ss_dssp TTTC--SSCEEEEEESSTTTTTTCC----SCBCCEECCSSCCHHHHHHHHHHHHTSCSTT-CCTHHHHHHHHTTT-CHHH
T ss_pred Hhhc--CCCEEEEEcCCHHHHHhhc----CCceEEEecCCCCHHHHHHHHHHhhCCChhh-CcHHHHHHHHHhCC-CHHH
Confidence 2222 2335555777553321111 1235667775 89999999998877543322 23457788888876 4555
Q ss_pred HHHH
Q 001066 899 LQAL 902 (1167)
Q Consensus 899 L~~L 902 (1167)
|+.+
T Consensus 324 l~~~ 327 (1249)
T 3sfz_A 324 VSLI 327 (1249)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 161
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.33 E-value=0.00017 Score=85.30 Aligned_cols=47 Identities=19% Similarity=0.409 Sum_probs=36.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhh
Q 001066 1108 FRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSM 1163 (1167)
Q Consensus 1108 p~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~ 1163 (1167)
+.+|||||||||||+||++||+.+ +..|+.+.... ...+.++.+|..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~--~~~f~~l~a~~-------~~~~~ir~~~~~ 97 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA--NADVERISAVT-------SGVKEIREAIER 97 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT--TCEEEEEETTT-------CCHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh--CCCeEEEEecc-------CCHHHHHHHHHH
Confidence 349999999999999999999999 38899887532 234456666543
No 162
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.32 E-value=0.00028 Score=80.87 Aligned_cols=83 Identities=23% Similarity=0.300 Sum_probs=52.6
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccc--cchhhhc------------hHHHHHHHHHHHHH
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGAD--CLGKYVG------------DAERQLRLLFQVAE 781 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~--lls~~~g------------~~e~~L~~lF~~A~ 781 (1167)
|+++...++|+||||+|||+|+..+|..+......+.|+...... ......+ ..+..+..+...+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 567777899999999999999999998776544445555543211 0000001 12233333333333
Q ss_pred hcCCcEEEEcCCCCcCc
Q 001066 782 KCQPSIIFFDEIDGLAP 798 (1167)
Q Consensus 782 ~~~psILfIDEID~L~~ 798 (1167)
...|.+||||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 55799999999999874
No 163
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.26 E-value=0.00016 Score=75.22 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=33.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhccc-ceEEEEeehhhHhhhcc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIG-NVEIQKVDLATISQEGR 1150 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G-~L~fisvD~sell~kyi 1150 (1167)
.+||+||||||||+||++|++.+.. ...++-+..++++..+.
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELK 98 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHH
Confidence 3999999999999999999998731 15677788888877654
No 164
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.26 E-value=0.0001 Score=81.39 Aligned_cols=54 Identities=15% Similarity=0.321 Sum_probs=37.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcc--cceEE--EEeehhhHhhhc---------ccchHHHHHHHhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFI--GNVEI--QKVDLATISQEG---------RGDLVQGLTLLLS 1162 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~--G~L~f--isvD~sell~ky---------iGesE~nvr~iF~ 1162 (1167)
.||||||||||||+||.|||+.+. |.+++ -.+-++.+.+++ +.+.-..+|+||.
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~~~l~G~vn~~~~~f~l~~~~~k~i~l~Ee~~~~~d~~~~lr~i~~ 172 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIWWEEGKMTAKVVESAKAILG 172 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCEEECCTTCSSCTTGGGSSCSEEEECSCCEETTTHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcccceeeccccccccccccccEEEEeccccchhHHHHHHHHHhC
Confidence 499999999999999999999751 11111 122467777777 3345566888885
No 165
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.25 E-value=0.00013 Score=86.14 Aligned_cols=47 Identities=15% Similarity=0.310 Sum_probs=39.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccc---ceEEEEeehhhHhhhcccchHHH
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIG---NVEIQKVDLATISQEGRGDLVQG 1156 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G---~L~fisvD~sell~kyiGesE~n 1156 (1167)
+|||||||||||+||++||+.+.. ...++.++.+++.+.+++....+
T Consensus 133 lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~ 182 (440)
T 2z4s_A 133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEG 182 (440)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcc
Confidence 999999999999999999998720 26789999999998888766654
No 166
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.25 E-value=0.00015 Score=80.41 Aligned_cols=38 Identities=21% Similarity=0.432 Sum_probs=31.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccc-ceEEEEeehhhHhh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIG-NVEIQKVDLATISQ 1147 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G-~L~fisvD~sell~ 1147 (1167)
+||+||||||||+||++||+.+.. ...|+.++++++..
T Consensus 50 ~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~ 88 (311)
T 4fcw_A 50 FLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME 88 (311)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCS
T ss_pred EEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccc
Confidence 999999999999999999998731 14589999987643
No 167
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=97.24 E-value=0.00015 Score=64.31 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=42.4
Q ss_pred CCCCCCCCcceecCCCCCCCCCcceeccCCCCccccccCCCCCCCCCCccc
Q 001066 439 WPRIKQGRRCGLCGCGNDGKPPKRLIQDAGDSENEVYSGSSASEEPNYDIW 489 (1167)
Q Consensus 439 ~~~~~~~~~C~lC~~~~~~~~~~~v~cd~c~~~vh~~c~g~~~~~~~~~~~ 489 (1167)
++.......|.+|+.++..+.+.+++||.|+...|+.|+++..+|.+.|+|
T Consensus 10 ~~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C 60 (71)
T 2ku3_A 10 QSLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLC 60 (71)
T ss_dssp CCCCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCC
T ss_pred ccCCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCC
Confidence 345567789999998887788999999999999999999998777655443
No 168
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.24 E-value=0.00012 Score=74.98 Aligned_cols=41 Identities=27% Similarity=0.391 Sum_probs=34.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcc---cceEEEEeehhhHhhhcc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFI---GNVEIQKVDLATISQEGR 1150 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~---G~L~fisvD~sell~kyi 1150 (1167)
.++|+||||||||+||++|++.+. | ..++-++++++++++.
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~~g-~~~~~~~~~~~~~~~~ 83 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEKKG-IRGYFFDTKDLIFRLK 83 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHHSC-CCCCEEEHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcC-CeEEEEEHHHHHHHHH
Confidence 399999999999999999999873 3 5667788999887654
No 169
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.24 E-value=0.00018 Score=81.01 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=34.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcc---cceEEEEeehhhHhhhccc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFI---GNVEIQKVDLATISQEGRG 1151 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~---G~L~fisvD~sell~kyiG 1151 (1167)
++|||||||||||+||.+||+.+. | ..++-+..+++++.+.+
T Consensus 154 ~lll~G~~GtGKT~La~aia~~~~~~~g-~~v~~~~~~~l~~~l~~ 198 (308)
T 2qgz_A 154 GLYLYGDMGIGKSYLLAAMAHELSEKKG-VSTTLLHFPSFAIDVKN 198 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHSC-CCEEEEEHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhcC-CcEEEEEHHHHHHHHHH
Confidence 499999999999999999999773 2 56777888888876644
No 170
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.23 E-value=0.00025 Score=79.75 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=31.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhH
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATI 1145 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sel 1145 (1167)
+||+||||||||+||++||+.+ + ..|+.+..+.+
T Consensus 58 vll~G~~GtGKT~la~~ia~~~-~-~~~~~~~~~~~ 91 (338)
T 3pfi_A 58 ILFSGPAGLGKTTLANIISYEM-S-ANIKTTAAPMI 91 (338)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT-T-CCEEEEEGGGC
T ss_pred EEEECcCCCCHHHHHHHHHHHh-C-CCeEEecchhc
Confidence 9999999999999999999999 3 78999998765
No 171
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.22 E-value=0.00012 Score=87.97 Aligned_cols=42 Identities=17% Similarity=0.353 Sum_probs=37.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGD 1152 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGe 1152 (1167)
.+||+||||||||+||++||+.+ | ..++.++.+.+.+++.++
T Consensus 79 ~lLL~GppGtGKTtla~~la~~l-~-~~~i~in~s~~~~~~~~~ 120 (516)
T 1sxj_A 79 AAMLYGPPGIGKTTAAHLVAQEL-G-YDILEQNASDVRSKTLLN 120 (516)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT-T-CEEEEECTTSCCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-C-CCEEEEeCCCcchHHHHH
Confidence 39999999999999999999999 4 999999999887766543
No 172
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.22 E-value=0.00018 Score=78.28 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=30.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccc-ceEEEEeehhhH
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIG-NVEIQKVDLATI 1145 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G-~L~fisvD~sel 1145 (1167)
+||+||||||||+||++|++.+.. +..|+.|+++.+
T Consensus 32 vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 32 VLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 (265)
T ss_dssp EEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred EEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence 999999999999999999997731 157999998875
No 173
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.21 E-value=0.00055 Score=71.60 Aligned_cols=27 Identities=22% Similarity=0.144 Sum_probs=24.2
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHH
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIG 742 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~ 742 (1167)
|+++..-++|+||||+|||+|+..+|.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 466777899999999999999999998
No 174
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=97.21 E-value=0.00018 Score=66.42 Aligned_cols=52 Identities=12% Similarity=0.044 Sum_probs=42.7
Q ss_pred CCCCCCCCCcceecCCCCCCCCCcceeccCCCCccccccCCCCCCCCCCccc
Q 001066 438 GWPRIKQGRRCGLCGCGNDGKPPKRLIQDAGDSENEVYSGSSASEEPNYDIW 489 (1167)
Q Consensus 438 ~~~~~~~~~~C~lC~~~~~~~~~~~v~cd~c~~~vh~~c~g~~~~~~~~~~~ 489 (1167)
..+..+....|.+|+.+.....+.+++||.|+...|+.|+++..+|.+.|+|
T Consensus 18 ~~~~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C 69 (88)
T 2l43_A 18 SQSLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLC 69 (88)
T ss_dssp TTCCCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCC
T ss_pred CCCcCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceEC
Confidence 3455677889999998877778899999999999999999998776654443
No 175
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.19 E-value=0.00026 Score=74.58 Aligned_cols=41 Identities=15% Similarity=0.095 Sum_probs=33.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhccc-ceEEEEeehhhHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIG-NVEIQKVDLATISQEG 1149 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G-~L~fisvD~sell~ky 1149 (1167)
.+||+||||||||+||++||+.+.. ...++.++.+++.+.+
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 95 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIS 95 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 4999999999999999999998731 1567888888876654
No 176
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.18 E-value=0.00016 Score=81.39 Aligned_cols=31 Identities=16% Similarity=0.505 Sum_probs=28.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeeh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDL 1142 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~ 1142 (1167)
+|||||||||||+||++||+.+ + ..|+.+..
T Consensus 49 vll~G~pGtGKT~la~~la~~~-~-~~~~~i~~ 79 (331)
T 2r44_A 49 ILLEGVPGLAKTLSVNTLAKTM-D-LDFHRIQF 79 (331)
T ss_dssp EEEESCCCHHHHHHHHHHHHHT-T-CCEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHh-C-CCeEEEec
Confidence 9999999999999999999999 3 78888876
No 177
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.16 E-value=0.00063 Score=78.23 Aligned_cols=83 Identities=24% Similarity=0.344 Sum_probs=51.4
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc--ccchhhh------------chHHHHHHHHHHHHH
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA--DCLGKYV------------GDAERQLRLLFQVAE 781 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~--~lls~~~------------g~~e~~L~~lF~~A~ 781 (1167)
|+++...++|+|+||+|||+||..+|..+......+.|+..... ....... ...+..+..+-..++
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 56777889999999999999999999887654444555554211 0000000 011222222222334
Q ss_pred hcCCcEEEEcCCCCcCc
Q 001066 782 KCQPSIIFFDEIDGLAP 798 (1167)
Q Consensus 782 ~~~psILfIDEID~L~~ 798 (1167)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 56789999999998874
No 178
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.03 E-value=0.0044 Score=73.08 Aligned_cols=78 Identities=19% Similarity=0.167 Sum_probs=53.5
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc-----------------ch-hhhchHHHHHHHHHHHH
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC-----------------LG-KYVGDAERQLRLLFQVA 780 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l-----------------ls-~~~g~~e~~L~~lF~~A 780 (1167)
++..|+|.|++|+||||++..||..+......+.++..+.... .. ....+....+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 3567889999999999999999999887666666665443211 00 01123344556677777
Q ss_pred HhcCCcEEEEcCCCCc
Q 001066 781 EKCQPSIIFFDEIDGL 796 (1167)
Q Consensus 781 ~~~~psILfIDEID~L 796 (1167)
....+.+|+||-...+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7777899999987554
No 179
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.03 E-value=0.00038 Score=78.80 Aligned_cols=55 Identities=16% Similarity=0.139 Sum_probs=44.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHHHHhhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLTLLLSM 1163 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr~iF~~ 1163 (1167)
.+||+||||||||+||.++|....++.-|+++.+++.++.|..+.++.+++++..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~ 179 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARA 179 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHH
Confidence 4799999999999999999986433466888877888888887788877776654
No 180
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.00 E-value=0.00036 Score=77.72 Aligned_cols=34 Identities=32% Similarity=0.612 Sum_probs=30.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhH
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATI 1145 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sel 1145 (1167)
+||+||||||||+||++||+.+ + ..|+.+..+.+
T Consensus 41 vll~G~~GtGKT~la~~i~~~~-~-~~~~~~~~~~~ 74 (324)
T 1hqc_A 41 LLLFGPPGLGKTTLAHVIAHEL-G-VNLRVTSGPAI 74 (324)
T ss_dssp CEEECCTTCCCHHHHHHHHHHH-T-CCEEEECTTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHh-C-CCEEEEecccc
Confidence 8999999999999999999999 3 78888887765
No 181
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.99 E-value=0.00048 Score=77.11 Aligned_cols=33 Identities=30% Similarity=0.487 Sum_probs=30.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLAT 1144 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~se 1144 (1167)
+||+||||||||++|++||+.+ + ..|+.++.+.
T Consensus 51 ~L~~G~~G~GKT~la~~la~~l-~-~~~~~i~~~~ 83 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHDV-N-ADMMFVNGSD 83 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHHT-T-EEEEEEETTT
T ss_pred EEeeCcCCCCHHHHHHHHHHHh-C-CCEEEEcccc
Confidence 7999999999999999999999 3 8999999766
No 182
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.96 E-value=0.00091 Score=75.57 Aligned_cols=83 Identities=16% Similarity=0.195 Sum_probs=51.0
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcC------CCceEEEEeccc---cc----chhh------------h---c
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARG------DKRIAYFARKGA---DC----LGKY------------V---G 767 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~------~~~i~~~~l~~~---~l----ls~~------------~---g 767 (1167)
|+++...++|+||||+|||+|+..+|..+... ...+.|+..... .- ...+ + .
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 56777789999999999999999999876432 233444444321 10 0000 0 0
Q ss_pred hHH---HHHHHHHHHHHh-cCCcEEEEcCCCCcCc
Q 001066 768 DAE---RQLRLLFQVAEK-CQPSIIFFDEIDGLAP 798 (1167)
Q Consensus 768 ~~e---~~L~~lF~~A~~-~~psILfIDEID~L~~ 798 (1167)
..+ ..+..+...+.. ..+.+|+||.+..+..
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 011 123334444445 6789999999998864
No 183
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.96 E-value=0.00031 Score=74.73 Aligned_cols=25 Identities=16% Similarity=0.441 Sum_probs=23.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhccc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIG 1133 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G 1133 (1167)
.+|||||||||||++|.+||+.+.|
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4999999999999999999999854
No 184
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.94 E-value=0.00034 Score=83.90 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=30.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccc--ceEEEEeeh---hhHhhhcccchH
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIG--NVEIQKVDL---ATISQEGRGDLV 1154 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G--~L~fisvD~---sell~kyiGesE 1154 (1167)
+||+||||||||+||++||+.+.. .+.++++.. ++|+..+.+...
T Consensus 44 VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~ 93 (500)
T 3nbx_X 44 VFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQAL 93 (500)
T ss_dssp EEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC----
T ss_pred eEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHH
Confidence 999999999999999999997721 124555543 666666655543
No 185
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.92 E-value=0.00074 Score=79.93 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=23.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhhcCC
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCARGD 748 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~~~~ 748 (1167)
.+||.|+||||||+++.+++..+....
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 799999999999999999998886543
No 186
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.91 E-value=0.0015 Score=74.45 Aligned_cols=30 Identities=23% Similarity=0.190 Sum_probs=25.9
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
|+++..-++|+||||+|||+|+..+|....
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~ 147 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQ 147 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 567777789999999999999999998743
No 187
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.86 E-value=0.0038 Score=66.26 Aligned_cols=40 Identities=33% Similarity=0.474 Sum_probs=29.4
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEE
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFA 755 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~ 755 (1167)
|+++...++|+||||+|||+|+..+|..+......+-|+.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 5666778999999999999999988776544333344443
No 188
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.80 E-value=0.0019 Score=72.96 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=47.1
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccchh----h------------hchHHHH-HHHHHH
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLGK----Y------------VGDAERQ-LRLLFQ 778 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls~----~------------~g~~e~~-L~~lF~ 778 (1167)
|+++. .++|+||||+|||+|+..++..+......-.+++++....+.. . ....+.. +. +.+
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~-i~~ 102 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRID-MVN 102 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHH-HHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHH-HHH
Confidence 56666 6899999999999999888776654211112333333222110 0 0112222 21 222
Q ss_pred H---HHhcCCcEEEEcCCCCcCc
Q 001066 779 V---AEKCQPSIIFFDEIDGLAP 798 (1167)
Q Consensus 779 ~---A~~~~psILfIDEID~L~~ 798 (1167)
. .....|.+|+||-|..|.+
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHHhhccCceEEEEeccccccc
Confidence 2 2345799999999999975
No 189
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.77 E-value=0.0021 Score=87.43 Aligned_cols=83 Identities=24% Similarity=0.344 Sum_probs=56.1
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc--ccchhhh------------chHHHHHHHHHHHHH
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA--DCLGKYV------------GDAERQLRLLFQVAE 781 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~--~lls~~~------------g~~e~~L~~lF~~A~ 781 (1167)
++++...+||+||||||||+||.+++.+.........|+.+... .+..... ...+...+.+....+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 56788899999999999999999999887766555666554221 1111111 112333444444455
Q ss_pred hcCCcEEEEcCCCCcCc
Q 001066 782 KCQPSIIFFDEIDGLAP 798 (1167)
Q Consensus 782 ~~~psILfIDEID~L~~ 798 (1167)
...|.+|+||++..|.+
T Consensus 1157 ~~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred hCCCCEEEECCcccccc
Confidence 66799999999999965
No 190
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.75 E-value=0.0018 Score=68.97 Aligned_cols=27 Identities=41% Similarity=0.534 Sum_probs=23.5
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHH
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIG 742 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~ 742 (1167)
++++..-+.|.||+|+|||||++.|+.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 456667799999999999999999984
No 191
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.75 E-value=0.0024 Score=74.53 Aligned_cols=120 Identities=16% Similarity=0.150 Sum_probs=61.6
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCC----CceEEEEecccccch--------hhhc----------------
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGD----KRIAYFARKGADCLG--------KYVG---------------- 767 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~----~~i~~~~l~~~~lls--------~~~g---------------- 767 (1167)
|+.+..-++|+||||+|||+|++.+|....... .....++++....+. ..++
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 567778899999999999999998765432210 111223332222100 0000
Q ss_pred ---hHHHHHHHHHHHHHhcCCcEEEEcCCCCcCcccCcccccch--HHHHHHHHHHhhcccCCCceEEEccCC
Q 001066 768 ---DAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTH--SSVVSTLLALMDGLKSRGSVVVIGATN 835 (1167)
Q Consensus 768 ---~~e~~L~~lF~~A~~~~psILfIDEID~L~~~~~~~~~~~~--~~vl~~LL~lLd~l~~~~~ViVIaTTN 835 (1167)
.....+..+...+....|.+|+||++-.+............ ...+..++..|..+....++.||.++.
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~H 326 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQ 326 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 01112233334444567999999999887652211111111 233355556565554333455555554
No 192
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.74 E-value=0.0017 Score=68.27 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=25.3
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
++++..-+.|.||+|+|||||++.|+..+.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456667799999999999999999998543
No 193
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.73 E-value=0.00069 Score=76.77 Aligned_cols=34 Identities=26% Similarity=0.478 Sum_probs=28.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhH
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATI 1145 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sel 1145 (1167)
++||||||||||+||++||+.+ + .++....++.+
T Consensus 54 ~ll~Gp~G~GKTTLa~~ia~~l-~-~~~~~~sg~~~ 87 (334)
T 1in4_A 54 VLLAGPPGLGKTTLAHIIASEL-Q-TNIHVTSGPVL 87 (334)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH-T-CCEEEEETTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHh-C-CCEEEEechHh
Confidence 8999999999999999999998 3 67766666544
No 194
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.73 E-value=0.0053 Score=64.77 Aligned_cols=107 Identities=10% Similarity=0.075 Sum_probs=63.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc-------ccchhhh-----------------chHHHHHHHH
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA-------DCLGKYV-----------------GDAERQLRLL 776 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~-------~lls~~~-----------------g~~e~~L~~l 776 (1167)
..|++|+++|.||||+|-++|........++-|+...-. .++.... ..........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 468899999999999999999988777777777754332 1222220 0012334444
Q ss_pred HHHHHh----cCCcEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCC
Q 001066 777 FQVAEK----CQPSIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRP 837 (1167)
Q Consensus 777 F~~A~~----~~psILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~ 837 (1167)
+..+.. ....+|+||||-....-+- --...++.+|...+. ..-||.|++.+
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~--------l~~~ev~~~l~~Rp~--~~~vIlTGr~a 163 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDY--------LPLEEVISALNARPG--HQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTS--------SCHHHHHHHHHTSCT--TCEEEEECSSC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCC--------CCHHHHHHHHHhCcC--CCEEEEECCCC
Confidence 554443 4578999999954321000 002246666665433 34555577764
No 195
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.71 E-value=0.0012 Score=66.81 Aligned_cols=35 Identities=11% Similarity=0.367 Sum_probs=30.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATIS 1146 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell 1146 (1167)
|+|+||||+|||.+|++||..| + ..|+.+++-.+.
T Consensus 6 i~l~G~~GsGKST~a~~La~~l-~-~~~~~~~~D~~~ 40 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQSVL-P-EPWLAFGVDSLI 40 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHS-S-SCEEEEEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc-C-CCeEEeccchHh
Confidence 8999999999999999999998 3 678887775544
No 196
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.71 E-value=0.00082 Score=69.28 Aligned_cols=37 Identities=24% Similarity=0.481 Sum_probs=28.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhccc---ceEEEEeehhhH
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIG---NVEIQKVDLATI 1145 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G---~L~fisvD~sel 1145 (1167)
.+||+||||||||+||+++++.+.+ ...++.++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc
Confidence 4999999999999999999987511 145777776543
No 197
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.69 E-value=0.0025 Score=68.66 Aligned_cols=76 Identities=13% Similarity=0.095 Sum_probs=44.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEE--eccc---ccchhhhchH-----HHHHHHHHHHHHh----cCCc
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFA--RKGA---DCLGKYVGDA-----ERQLRLLFQVAEK----CQPS 786 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~--l~~~---~lls~~~g~~-----e~~L~~lF~~A~~----~~ps 786 (1167)
.-++++||+|+||||++..++..+......+-++. .+.. .+... .|-. -.....++..+.. ..+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 34777899999999999999888765544444442 1111 11111 1100 0012334554443 3588
Q ss_pred EEEEcCCCCcC
Q 001066 787 IIFFDEIDGLA 797 (1167)
Q Consensus 787 ILfIDEID~L~ 797 (1167)
+|+|||+..|.
T Consensus 92 vViIDEaQ~l~ 102 (223)
T 2b8t_A 92 VIGIDEVQFFD 102 (223)
T ss_dssp EEEECSGGGSC
T ss_pred EEEEecCccCc
Confidence 99999998765
No 198
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.67 E-value=0.0065 Score=71.52 Aligned_cols=78 Identities=18% Similarity=0.124 Sum_probs=49.8
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc--------hh----------hhchHHHHHHHHHHHH
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL--------GK----------YVGDAERQLRLLFQVA 780 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll--------s~----------~~g~~e~~L~~lF~~A 780 (1167)
++..++|.||+|+||||++..||..+......+.++..+..... .. ............+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35668889999999999999999988766666666654432110 00 0011222234445555
Q ss_pred HhcCCcEEEEcCCCCc
Q 001066 781 EKCQPSIIFFDEIDGL 796 (1167)
Q Consensus 781 ~~~~psILfIDEID~L 796 (1167)
....+.+|+||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 5567899999987654
No 199
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.65 E-value=0.0031 Score=74.58 Aligned_cols=41 Identities=20% Similarity=0.372 Sum_probs=32.3
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhc-CCCceEEEEe
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCAR-GDKRIAYFAR 756 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~-~~~~i~~~~l 756 (1167)
|+.+..-++|.|+||+|||+|+..+|..+.. ....+.|+..
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 6777778999999999999999999987754 2334666654
No 200
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.63 E-value=0.0016 Score=71.86 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=30.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhccc---ceEEEEeehhhH
Q 001066 1107 GFRVLISGSPGSGQRHLAACLLHSFIG---NVEIQKVDLATI 1145 (1167)
Q Consensus 1107 rp~iLf~GPpGtGKT~LAkaLA~~l~G---~L~fisvD~sel 1145 (1167)
-|.+|||||||||||++|++||+.+.+ ...|+.++.+..
T Consensus 38 ~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 79 (319)
T 2chq_A 38 IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (319)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTST
T ss_pred CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccc
Confidence 345999999999999999999998621 245778887653
No 201
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.63 E-value=0.0012 Score=74.33 Aligned_cols=37 Identities=22% Similarity=0.435 Sum_probs=29.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhccc----ceEEEEeehhh
Q 001066 1108 FRVLISGSPGSGQRHLAACLLHSFIG----NVEIQKVDLAT 1144 (1167)
Q Consensus 1108 p~iLf~GPpGtGKT~LAkaLA~~l~G----~L~fisvD~se 1144 (1167)
+.+|||||||||||+||++||+.+.+ +..++.++.+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 45999999999999999999998621 23577776554
No 202
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.61 E-value=0.009 Score=64.43 Aligned_cols=39 Identities=23% Similarity=0.202 Sum_probs=31.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG 758 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~ 758 (1167)
...|++.|+||+||||++-.+|..+......+.++.++.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 356999999999999999999999876666666666643
No 203
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.61 E-value=0.0018 Score=67.40 Aligned_cols=25 Identities=16% Similarity=0.196 Sum_probs=20.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
.-++++||+|+||||++..++..+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999977776654
No 204
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.60 E-value=0.0056 Score=68.92 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=32.4
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR 756 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l 756 (1167)
|+.+..-++|.|+||+|||+|+..+|..+......+-||++
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 56777789999999999999999999877654445556654
No 205
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.59 E-value=0.0038 Score=68.56 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=26.5
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhc
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCAR 746 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~ 746 (1167)
|+++...++|+||+|+|||+|+..++..+..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 5666678999999999999999999986654
No 206
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.58 E-value=0.0016 Score=67.96 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=31.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGD 1152 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGe 1152 (1167)
.|+|.||||+|||.||++||..| | ..|+ |+..++.+..|.
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l-~-~~~i--~~d~~~~~~~g~ 66 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKL-N-VPFI--DLDWYIEERFHK 66 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-T-CCEE--EHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc-C-CCEE--cchHHHHHHhCC
Confidence 49999999999999999999988 4 6665 555565554443
No 207
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.57 E-value=0.00065 Score=76.37 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSF 1131 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l 1131 (1167)
+|||||||||||+||++||+.+
T Consensus 48 vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHS
T ss_pred EEEECCCCccHHHHHHHHHHhC
Confidence 9999999999999999999988
No 208
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.52 E-value=0.0016 Score=66.49 Aligned_cols=34 Identities=24% Similarity=0.546 Sum_probs=27.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATIS 1146 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell 1146 (1167)
.|+|+|+||+|||.+|++||..| | +.++. +..++
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~-~-~~~~~--~d~~~ 46 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKS-G-LKYIN--VGDLA 46 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH-C-CEEEE--HHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHh-C-CeEEE--HHHHH
Confidence 49999999999999999999988 4 66654 44543
No 209
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.52 E-value=0.0016 Score=66.50 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=32.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccch
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDL 1153 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGes 1153 (1167)
.|+|+||||+|||.+|++||..| | ..|+ |+..++.+..|.+
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l-~-~~~i--~~d~~~~~~~g~~ 47 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLT-K-RILY--DSDKEIEKRTGAD 47 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-C-CCEE--EHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-C-CCEE--EChHHHHHHcCCC
Confidence 49999999999999999999988 4 5665 5556666665544
No 210
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.51 E-value=0.001 Score=74.55 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=29.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcc-cceEEEEeehhhH
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFI-GNVEIQKVDLATI 1145 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~-G~L~fisvD~sel 1145 (1167)
+||+||||||||+||++|++... .+..|+.|+.+.+
T Consensus 28 vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 28 VLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL 64 (304)
T ss_dssp EEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred EEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence 99999999999999999999652 0256888887655
No 211
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.48 E-value=0.0018 Score=71.22 Aligned_cols=77 Identities=18% Similarity=0.299 Sum_probs=45.0
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhhcC-CCceEEEEeccccc-------chh-hhchHHHHHHHHHHHHHhcCCcEE
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCARG-DKRIAYFARKGADC-------LGK-YVGDAERQLRLLFQVAEKCQPSII 788 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~~~-~~~i~~~~l~~~~l-------ls~-~~g~~e~~L~~lF~~A~~~~psIL 788 (1167)
.+...++|.||+|+||||+++.|+..+... ...+.+.......+ +.. .++.....++..+..+....|.+|
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence 445568999999999999999999877532 22222221111000 000 000001123555666666789999
Q ss_pred EEcCCC
Q 001066 789 FFDEID 794 (1167)
Q Consensus 789 fIDEID 794 (1167)
++||.-
T Consensus 103 llDEp~ 108 (261)
T 2eyu_A 103 FVGEMR 108 (261)
T ss_dssp EESCCC
T ss_pred EeCCCC
Confidence 999974
No 212
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.46 E-value=0.0098 Score=72.10 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=50.3
Q ss_pred cEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCC--cCCcccCCCCCcccccccCCCCHHH
Q 001066 786 SIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPE--AVDPALRRPGRFDREIYFPLPSMED 863 (1167)
Q Consensus 786 sILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d--~Ld~aLlrpgRF~~~I~~~~P~~eE 863 (1167)
-+|+|||++.|.... ...+...|..++..- ..-+|.+|.+|.+|. .++..++. -|...|.|...+..+
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~G-Ra~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~D 414 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKVEELIARIAQKA-RAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKID 414 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHHHHHHHHHHHHC-TTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHH
T ss_pred EEEEEeCHHHHhhhh-------hHHHHHHHHHHHHHH-hhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHH
Confidence 589999999886411 112333333333322 344688888888887 67877776 677888888888888
Q ss_pred HHHHHH
Q 001066 864 RAAILS 869 (1167)
Q Consensus 864 R~eIL~ 869 (1167)
...||-
T Consensus 415 sr~ILd 420 (574)
T 2iut_A 415 SRTILD 420 (574)
T ss_dssp HHHHHS
T ss_pred HHHhcC
Confidence 888874
No 213
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.46 E-value=0.0014 Score=74.23 Aligned_cols=37 Identities=19% Similarity=0.401 Sum_probs=28.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhccc---ceEEEEeehhh
Q 001066 1108 FRVLISGSPGSGQRHLAACLLHSFIG---NVEIQKVDLAT 1144 (1167)
Q Consensus 1108 p~iLf~GPpGtGKT~LAkaLA~~l~G---~L~fisvD~se 1144 (1167)
|.+|||||||||||+||++||+.+.+ ...++.++.+.
T Consensus 47 ~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 86 (340)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD 86 (340)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc
Confidence 45999999999999999999998632 23466666654
No 214
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.44 E-value=0.006 Score=71.87 Aligned_cols=41 Identities=17% Similarity=0.247 Sum_probs=32.4
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhc-CCCceEEEEe
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCAR-GDKRIAYFAR 756 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~-~~~~i~~~~l 756 (1167)
|+.+..-++|.|+||+|||+|+..+|..... ....+.|+++
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 6777778999999999999999999988764 2345666655
No 215
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.44 E-value=0.0049 Score=70.54 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=26.0
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
++++..-+.|+||||+|||+|++.++..+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56777789999999999999999999876
No 216
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=96.43 E-value=0.0056 Score=58.62 Aligned_cols=95 Identities=18% Similarity=0.369 Sum_probs=64.3
Q ss_pred CCCcceecCCCCCCCCCcceeccCCCCccccccCCCCCCCCCCcccccCCCCCCcccccCCCCccccccCCceEEeeccc
Q 001066 444 QGRRCGLCGCGNDGKPPKRLIQDAGDSENEVYSGSSASEEPNYDIWDGFGDEPGWLGRLLGPINDRYGIAGTWVHQHCAV 523 (1167)
Q Consensus 444 ~~~~C~lC~~~~~~~~~~~v~cd~c~~~vh~~c~g~~~~~~~~~~~~~~~~~p~~~g~~lg~~~~k~t~~g~WvH~~CAl 523 (1167)
....|.+|+.+.+ ...+++|+.|+..-|..|.+....+..... |.=..|.
T Consensus 6 ~~~~C~~C~~~g~--~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~---------------------------W~C~~C~- 55 (111)
T 2ysm_A 6 SGANCAVCDSPGD--LLDQFFCTTCGQHYHGMCLDIAVTPLKRAG---------------------------WQCPECK- 55 (111)
T ss_dssp CCSCBTTTCCCCC--TTTSEECSSSCCEECTTTTTCCCCTTTSTT---------------------------CCCTTTC-
T ss_pred CCCCCcCCCCCCC--CcCCeECCCCCCCcChHHhCCccccccccC---------------------------ccCCcCC-
Confidence 4568999977643 356899999999999999887654322222 3222232
Q ss_pred cCCceEEccCccccchHHHHhhcccccccCCCCCCC---ceeecCCCCCCcccccccCCCcceeccccceeccccccc
Q 001066 524 WSPEVYFAGLGCLKNIRAALCRGRALKCTRCGRPGA---TIGCRVDRCPRTYHLPCARANGCIFDHRKFLIACTDHRH 598 (1167)
Q Consensus 524 w~pev~~~~~~~l~~i~~~~~~~~~~~C~iC~~~GA---~I~C~~~~C~~~FH~~CA~~~g~~~~~~~~~~~C~~Hr~ 598 (1167)
.|.+|++.|- -|.|.. |.+.||..|-.-.-- ......+||+....
T Consensus 56 --------------------------~C~~C~~~~~~~~ll~Cd~--C~~~yH~~Cl~ppl~--~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 --------------------------VCQNCKQSGEDSKMLVCDT--CDKGYHTFCLQPVMK--SVPTNGWKCKNCRI 103 (111)
T ss_dssp --------------------------CCTTTCCCSCCTTEEECSS--SCCEEEGGGSSSCCS--SCCSSCCCCHHHHC
T ss_pred --------------------------cccccCccCCCCCeeECCC--CCcHHhHHhcCCccc--cCCCCCcCCcCCcC
Confidence 7999998764 688874 999999999864211 22334677875543
No 217
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.41 E-value=0.0049 Score=62.39 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=23.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
..|+|+|+||+||||++++|+..++
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999999999886
No 218
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.40 E-value=0.0061 Score=67.38 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=30.5
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcC-CCceEEEE
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARG-DKRIAYFA 755 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~-~~~i~~~~ 755 (1167)
++.+..-++|.||||+|||||++.||..+... ...+.++.
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 56667779999999999999999999887643 22344444
No 219
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.39 E-value=0.0018 Score=73.24 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=30.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhccc-------ceEEEEeehhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIG-------NVEIQKVDLAT 1144 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G-------~L~fisvD~se 1144 (1167)
.+||+||||||||+||++|++.+.. +..|+.++.+.
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 3999999999999999999998721 27889998664
No 220
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.38 E-value=0.0019 Score=78.87 Aligned_cols=33 Identities=30% Similarity=0.436 Sum_probs=26.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEE
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCARGDKRIAY 753 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~ 753 (1167)
..++|+|+||||||+++.+++..+......+.+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~ 237 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGL 237 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 568899999999999999999887655444433
No 221
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.38 E-value=0.0015 Score=72.33 Aligned_cols=38 Identities=21% Similarity=0.415 Sum_probs=29.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhccc---ceEEEEeehhhH
Q 001066 1108 FRVLISGSPGSGQRHLAACLLHSFIG---NVEIQKVDLATI 1145 (1167)
Q Consensus 1108 p~iLf~GPpGtGKT~LAkaLA~~l~G---~L~fisvD~sel 1145 (1167)
|.+|||||||||||++|+++|+.+.+ ...++.++.+..
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE 87 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecccc
Confidence 35999999999999999999998621 134777776643
No 222
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.36 E-value=0.0024 Score=72.63 Aligned_cols=36 Identities=17% Similarity=0.335 Sum_probs=30.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccc---------ceEEEEeehhhH
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIG---------NVEIQKVDLATI 1145 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G---------~L~fisvD~sel 1145 (1167)
+||+||||||||.||++|++.+.. ...++.++.+..
T Consensus 48 vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 92 (384)
T 2qby_B 48 NLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREV 92 (384)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccC
Confidence 999999999999999999997610 268899987654
No 223
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.34 E-value=0.003 Score=70.91 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=25.2
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
|+++..-++|+||||+|||+|+..+|...
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56677779999999999999999998764
No 224
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.34 E-value=0.031 Score=62.86 Aligned_cols=78 Identities=19% Similarity=0.172 Sum_probs=48.3
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc-----chhh-------------hchHHHHHHHHHHH
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC-----LGKY-------------VGDAERQLRLLFQV 779 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l-----ls~~-------------~g~~e~~L~~lF~~ 779 (1167)
.++..++|.||+|+||||++..||..+......+.++..+.... +..| .++....+...+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 44567889999999999999999998875544555554432110 0000 01122222334455
Q ss_pred HHhcCCcEEEEcCCCC
Q 001066 780 AEKCQPSIIFFDEIDG 795 (1167)
Q Consensus 780 A~~~~psILfIDEID~ 795 (1167)
+....+.+|+||+.-.
T Consensus 182 a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 182 ALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHTTCSEEEEEECCC
T ss_pred HHhcCCCEEEEECCCc
Confidence 5566889999997653
No 225
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.33 E-value=0.0016 Score=72.04 Aligned_cols=37 Identities=27% Similarity=0.580 Sum_probs=29.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhccc---ceEEEEeehhh
Q 001066 1108 FRVLISGSPGSGQRHLAACLLHSFIG---NVEIQKVDLAT 1144 (1167)
Q Consensus 1108 p~iLf~GPpGtGKT~LAkaLA~~l~G---~L~fisvD~se 1144 (1167)
|.+|||||||||||++|+++|+.+.+ ...++.++.+.
T Consensus 43 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 82 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD 82 (323)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc
Confidence 45999999999999999999998521 25688888765
No 226
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.32 E-value=0.0017 Score=66.32 Aligned_cols=32 Identities=28% Similarity=0.618 Sum_probs=29.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeeh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDL 1142 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~ 1142 (1167)
.|+|+|+||+|||.+|+.||..| | +.++..|-
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l-g-~~~id~D~ 35 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL-G-VGLLDTDV 35 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH-T-CCEEEHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc-C-CCEEeCch
Confidence 38999999999999999999999 5 89999884
No 227
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=96.30 E-value=0.0021 Score=69.82 Aligned_cols=95 Identities=19% Similarity=0.080 Sum_probs=62.5
Q ss_pred cccccccccccccC-CCCCCccccccchhhhhhhhhhhhccccCCcchhHHHHHHHHHHHhhhhhhhcc--ccccccchh
Q 001066 959 KREAGIAAHDLVSS-PLPSHLIPCLLQPLSTLLVSLYLDERLWLPPSLTKATKMIQSVIVSALDKKKLL--SDHWWSHIN 1035 (1167)
Q Consensus 959 ~re~~~a~~d~~~a-~L~~~iip~v~w~l~~l~~~~~l~E~l~L~~~~~~~~~~i~~~i~~~l~~~~~~--~~~~tga~~ 1035 (1167)
++++++++..++-. ..|-.++..++|. ..++.++++|++.....++..+.+.|...++|+++...+| ++++|||.+
T Consensus 21 yHEAGHAlva~~l~~~~pV~KVTIiPRG-~alG~t~~~P~ed~~~~tk~~l~~~i~v~LgGRaAEelifG~g~vttGA~~ 99 (238)
T 2di4_A 21 IHEAGHALMGLVSDDDDKVHKISIIPRG-MALGVTQQLPIEDKHIYDKKDLYNKILVLLGGRAAEEVFFGKDGITTGAEN 99 (238)
T ss_dssp HHHHHHHHHHHHCSSCCCCCCEECC-----------------CCCCBHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGHH
T ss_pred HHHHHHHHHHHHcCCCCceeEEEEeecC-CcceEEEeCCcccccccCHHHHHHHHHHHHhHHHHHHHHhCCCCcccChHh
Confidence 67777776665432 2334566667777 5788999999876667788889999999999999999999 789999999
Q ss_pred hhHHHHHHHHHHHHHHhhcccc
Q 001066 1036 DFLEEADIAKEIERRLQYAGII 1057 (1167)
Q Consensus 1036 d~~~~~~i~r~i~~~~~~~gl~ 1057 (1167)
|+.+++.|||.| +..+||.
T Consensus 100 Dl~~AT~iAr~M---V~~~GMs 118 (238)
T 2di4_A 100 DLQRATDLAYRM---VSMWGMS 118 (238)
T ss_dssp HHHHHHHHHHHH---HHTSCCC
T ss_pred HHHHHHHHHHHH---HHHhCCC
Confidence 999999999999 4455544
No 228
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.29 E-value=0.0019 Score=64.80 Aligned_cols=39 Identities=21% Similarity=0.374 Sum_probs=30.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcc--cceEEEEeehhhHhh
Q 001066 1108 FRVLISGSPGSGQRHLAACLLHSFI--GNVEIQKVDLATISQ 1147 (1167)
Q Consensus 1108 p~iLf~GPpGtGKT~LAkaLA~~l~--G~L~fisvD~sell~ 1147 (1167)
..++|+||+|+|||+|+++|+..+. | ..++.++++++..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g-~~~~~~~~~~~~~ 77 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAG-KNAAYIDAASMPL 77 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTT-CCEEEEETTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcC-CcEEEEcHHHhhH
Confidence 3499999999999999999999762 2 3467777776554
No 229
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.29 E-value=0.0027 Score=65.42 Aligned_cols=36 Identities=22% Similarity=0.549 Sum_probs=28.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh-cccceEEEEeehhhHhh
Q 001066 1108 FRVLISGSPGSGQRHLAACLLHS-FIGNVEIQKVDLATISQ 1147 (1167)
Q Consensus 1108 p~iLf~GPpGtGKT~LAkaLA~~-l~G~L~fisvD~sell~ 1147 (1167)
+.|+|+|+||+|||.+|+.||.. + | +.|+ |+..++.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~-g-~~~i--d~d~~~~ 47 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELD-G-FQHL--EVGKLVK 47 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST-T-EEEE--EHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC-C-CEEe--eHHHHHH
Confidence 45999999999999999999998 5 4 5554 5545544
No 230
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.28 E-value=0.0021 Score=65.26 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=28.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQE 1148 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~k 1148 (1167)
|+|.||||+|||.+|++||..| | +.|+. +-.++.+
T Consensus 7 i~i~G~~GsGKsTla~~La~~l-~-~~~~d--~d~~~~~ 41 (175)
T 1via_A 7 IVFIGFMGSGKSTLARALAKDL-D-LVFLD--SDFLIEQ 41 (175)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH-T-CEEEE--HHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHc-C-CCEEc--ccHHHHH
Confidence 8999999999999999999988 4 66654 5455443
No 231
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.26 E-value=0.0033 Score=63.32 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=28.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQE 1148 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~k 1148 (1167)
|.|.||+|+|||.||++||..+ | ..+ +|+-.++.+
T Consensus 7 i~l~G~~GsGKSTl~~~La~~l-~-~~~--id~d~~~~~ 41 (173)
T 1kag_A 7 IFLVGPMGAGKSTIGRQLAQQL-N-MEF--YDSDQEIEK 41 (173)
T ss_dssp EEEECCTTSCHHHHHHHHHHHT-T-CEE--EEHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh-C-CCE--EeccHHHHH
Confidence 8999999999999999999988 4 544 566566544
No 232
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.20 E-value=0.0055 Score=64.65 Aligned_cols=36 Identities=22% Similarity=0.399 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQE 1148 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~k 1148 (1167)
.|+|.|+||+|||.+|+.||..| | +.++ +...++.+
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l-~-~~~i--~~d~~~~~ 41 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERF-H-AAHL--ATGDMLRS 41 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-C-CEEE--EHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-C-ceEE--ehhHHHHH
Confidence 48999999999999999999988 4 5554 45455554
No 233
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.17 E-value=0.0029 Score=65.86 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=24.8
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 717 LTPPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 717 l~~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
+.+...|+|.||||+||||+++.||..++
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34556799999999999999999999987
No 234
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.14 E-value=0.0067 Score=61.74 Aligned_cols=51 Identities=18% Similarity=0.314 Sum_probs=34.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcc---cchHHHHHHHhhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGR---GDLVQGLTLLLSM 1163 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyi---GesE~nvr~iF~~ 1163 (1167)
-|+|.|+||+|||.+|+.|+..| | +.+++. ..++.+.. .+.-+.++++|..
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l-~-~~~i~~--d~~~~~~~~~~~~~~~~i~~~~~~ 61 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF-G-WVHLSA--GDLLRQEQQSGSKDGEMIATMIKN 61 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-C-CEEEEH--HHHHHHHHHTTCTTHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-C-CeEeeH--HHHHHHHHhcCCHHHHHHHHHHHC
Confidence 38999999999999999999988 4 555554 44544321 1223455565543
No 235
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.14 E-value=0.0053 Score=62.56 Aligned_cols=51 Identities=20% Similarity=0.360 Sum_probs=34.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhc-ccc--hHHHHHHHhhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEG-RGD--LVQGLTLLLSM 1163 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~ky-iGe--sE~nvr~iF~~ 1163 (1167)
.|+|.||||+|||.+|+.||..| | +.+ +|...++.+. -+. .-+.++++|..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l-~-~~~--i~~d~~~~~~~~~~~~~~~~i~~~~~~ 59 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL-G-FKK--LSTGDILRDHVARGTPLGERVRPIMER 59 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-T-CEE--ECHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-C-CeE--ecHHHHHHHHHHcCChHHHHHHHHHHc
Confidence 38999999999999999999988 4 554 5555555432 111 12345666654
No 236
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.13 E-value=0.0067 Score=62.99 Aligned_cols=36 Identities=28% Similarity=0.484 Sum_probs=28.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQE 1148 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~k 1148 (1167)
.|+|.||||+|||.+|+.||..| | +.++ ++..++.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l-~-~~~i--~~d~~~r~ 57 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL-G-IPQI--STGELFRR 57 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-T-CCEE--EHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-C-CcEE--ehhHHHHH
Confidence 48999999999999999999988 4 6655 44455443
No 237
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.10 E-value=0.0066 Score=64.44 Aligned_cols=41 Identities=27% Similarity=0.305 Sum_probs=28.9
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHh-hcCCCceEEEEe
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSC-ARGDKRIAYFAR 756 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l-~~~~~~i~~~~l 756 (1167)
|+++..-++|+|+||+|||++|..+|... ......+.|++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 56777789999999999999999877543 222233445443
No 238
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.09 E-value=0.03 Score=72.11 Aligned_cols=43 Identities=23% Similarity=0.310 Sum_probs=34.8
Q ss_pred cChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q 001066 689 AGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGS 743 (1167)
Q Consensus 689 ~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~ 743 (1167)
+|.+..++.|.+.+... ...+-|.|+|+.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 89999999998887531 12356889999999999999999863
No 239
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.09 E-value=0.0026 Score=66.14 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSF 1131 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l 1131 (1167)
+||+||||||||+||+++++.+
T Consensus 48 ~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 48 YLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999977
No 240
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.09 E-value=0.0036 Score=70.56 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 001066 1107 GFRVLISGSPGSGQRHLAACLLHSF 1131 (1167)
Q Consensus 1107 rp~iLf~GPpGtGKT~LAkaLA~~l 1131 (1167)
.|.+||+||||||||+||++||+.+
T Consensus 36 ~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 36 LPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3459999999999999999999964
No 241
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.08 E-value=0.0033 Score=64.15 Aligned_cols=32 Identities=25% Similarity=0.238 Sum_probs=26.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR 756 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l 756 (1167)
+..|+|+|+||+||||+++.||..++ +.++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~-----~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK-----RILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC-----CCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC-----CCEEEC
Confidence 45799999999999999999999987 455543
No 242
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.06 E-value=0.0034 Score=72.19 Aligned_cols=73 Identities=19% Similarity=0.263 Sum_probs=43.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhcC-CCceEEEEecccccc--------h-hhhchHHHHHHHHHHHHHhcCCcEEEE
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCARG-DKRIAYFARKGADCL--------G-KYVGDAERQLRLLFQVAEKCQPSIIFF 790 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~~-~~~i~~~~l~~~~ll--------s-~~~g~~e~~L~~lF~~A~~~~psILfI 790 (1167)
..++|.||+|+||||++++++..+... ...+..+. +...+. . ...+.....+...+..+....|.||++
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvill 202 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILV 202 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEec
Confidence 368899999999999999999887543 11111111 111110 0 001111112344666677789999999
Q ss_pred cCCC
Q 001066 791 DEID 794 (1167)
Q Consensus 791 DEID 794 (1167)
||+-
T Consensus 203 DEp~ 206 (356)
T 3jvv_A 203 GEMR 206 (356)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9984
No 243
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.06 E-value=0.015 Score=69.53 Aligned_cols=41 Identities=12% Similarity=0.108 Sum_probs=33.1
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcC-CCceEEEEe
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARG-DKRIAYFAR 756 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~-~~~i~~~~l 756 (1167)
|+.+..-++|.|+||+|||+|+..+|..+... ...+.|+++
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 67777789999999999999999999887754 445666655
No 244
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.05 E-value=0.0053 Score=65.19 Aligned_cols=37 Identities=22% Similarity=0.474 Sum_probs=29.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEG 1149 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~ky 1149 (1167)
.|+|.||||+|||.+|+.||..| | +.++ ++..++...
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l-~-~~~i--~~d~~~~~~ 45 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHF-E-LKHL--SSGDLLRDN 45 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS-S-SEEE--EHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-C-CeEE--echHHHHHh
Confidence 48999999999999999999988 4 5554 555555543
No 245
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.05 E-value=0.0057 Score=64.00 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
.+.|.||+|+|||||++.|+..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 478999999999999999999873
No 246
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.04 E-value=0.0034 Score=62.83 Aligned_cols=31 Identities=19% Similarity=0.166 Sum_probs=28.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeeh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDL 1142 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~ 1142 (1167)
|+|.||||+|||.+|+.||..| | ..|+..|-
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l-~-~~~i~~d~ 34 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKEL-K-YPIIKGSS 34 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH-C-CCEEECCC
T ss_pred EEEECCCCCCHHHHHHHHHHHh-C-CeeecCcc
Confidence 8999999999999999999998 4 88888774
No 247
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.03 E-value=0.0063 Score=62.51 Aligned_cols=35 Identities=26% Similarity=0.540 Sum_probs=27.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQE 1148 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~k 1148 (1167)
|+|.|+||+|||.+|+.||..| | +.+ ||+..++..
T Consensus 15 I~l~G~~GsGKsT~a~~L~~~l-~-~~~--i~~d~~~~~ 49 (199)
T 2bwj_A 15 IFIIGGPGSGKGTQCEKLVEKY-G-FTH--LSTGELLRE 49 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH-T-CEE--EEHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh-C-CeE--EcHHHHHHH
Confidence 8999999999999999999988 4 554 555455443
No 248
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.01 E-value=0.0035 Score=63.03 Aligned_cols=38 Identities=21% Similarity=0.410 Sum_probs=29.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhccc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRG 1151 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiG 1151 (1167)
|+|.|+||+|||.+|+.||..| | +.++.. ..++.+..|
T Consensus 5 I~l~G~~GsGKsT~a~~La~~l-g-~~~id~--d~~~~~~~g 42 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELARAL-G-YEFVDT--DIFMQHTSG 42 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH-T-CEEEEH--HHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh-C-CcEEcc--cHHHHHHhC
Confidence 8999999999999999999988 4 666654 455544334
No 249
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.99 E-value=0.0028 Score=73.21 Aligned_cols=83 Identities=17% Similarity=0.231 Sum_probs=47.3
Q ss_pred hhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcC-CCceEEEEecccccch---hhhch-----HHHHHHHHHHHHHh
Q 001066 712 FDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARG-DKRIAYFARKGADCLG---KYVGD-----AERQLRLLFQVAEK 782 (1167)
Q Consensus 712 ~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~-~~~i~~~~l~~~~lls---~~~g~-----~e~~L~~lF~~A~~ 782 (1167)
+..+.+.+...++|.||+|+||||++++|+..+... ...+.++.-....... .++.+ ....+...+..+..
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~ 207 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALR 207 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTT
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhh
Confidence 333334555678999999999999999999987532 2222222211000000 00110 11122445555556
Q ss_pred cCCcEEEEcCCC
Q 001066 783 CQPSIIFFDEID 794 (1167)
Q Consensus 783 ~~psILfIDEID 794 (1167)
..|.+|++||+-
T Consensus 208 ~~pd~illdE~~ 219 (372)
T 2ewv_A 208 EDPDVIFVGEMR 219 (372)
T ss_dssp SCCSEEEESCCC
T ss_pred hCcCEEEECCCC
Confidence 789999999984
No 250
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.98 E-value=0.0093 Score=61.08 Aligned_cols=36 Identities=17% Similarity=0.434 Sum_probs=28.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQE 1148 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~k 1148 (1167)
-|+|.|+||+|||.+|+.||..| | +.++.. ..++..
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l-~-~~~i~~--d~~~~~ 46 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKY-G-YTHLST--GDLLRS 46 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH-C-CEEEEH--HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-C-CeEEcH--HHHHHH
Confidence 49999999999999999999988 4 665544 455544
No 251
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.98 E-value=0.0031 Score=63.61 Aligned_cols=31 Identities=29% Similarity=0.360 Sum_probs=26.7
Q ss_pred EEEEcCCCCcHHHHHHHHHH-hcccceEEEEeeh
Q 001066 1110 VLISGSPGSGQRHLAACLLH-SFIGNVEIQKVDL 1142 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~-~l~G~L~fisvD~ 1142 (1167)
|+|.||||+|||.+|+.|+. .+ | ..+++.|.
T Consensus 5 I~i~G~~GsGKST~a~~L~~~~~-~-~~~i~~d~ 36 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIAKNP-G-FYNINRDD 36 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHST-T-EEEECHHH
T ss_pred EEEecCCCCCHHHHHHHHHhhcC-C-cEEecHHH
Confidence 89999999999999999999 56 4 77777664
No 252
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.97 E-value=0.017 Score=68.28 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=32.4
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR 756 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l 756 (1167)
|+.+..-++|.|+||+|||+++..+|..+......+-||++
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 67777789999999999999999999887654444555544
No 253
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.96 E-value=0.0057 Score=64.63 Aligned_cols=35 Identities=20% Similarity=0.444 Sum_probs=28.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQE 1148 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~k 1148 (1167)
|+|.||||+|||.+|+.||..| | + .-+|...++..
T Consensus 8 I~l~G~~GsGKsT~~~~La~~l-~-~--~~i~~d~~~~~ 42 (222)
T 1zak_A 8 VMISGAPASGKGTQCELIKTKY-Q-L--AHISAGDLLRA 42 (222)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH-C-C--EECCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh-C-C--ceecHHHHHHH
Confidence 8999999999999999999988 3 4 55666666654
No 254
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.95 E-value=0.0044 Score=63.39 Aligned_cols=28 Identities=36% Similarity=0.589 Sum_probs=24.6
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
..+..|+|.|+||+||||+++.|+..++
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456789999999999999999999886
No 255
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.94 E-value=0.017 Score=69.42 Aligned_cols=74 Identities=22% Similarity=0.318 Sum_probs=46.5
Q ss_pred cEEEEcCCCCcCcccCcccccchHHHHHHHHHHhhcccCCCceEEEccCCCCC--cCCcccCCCCCcccccccCCCCHHH
Q 001066 786 SIIFFDEIDGLAPCRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPE--AVDPALRRPGRFDREIYFPLPSMED 863 (1167)
Q Consensus 786 sILfIDEID~L~~~~~~~~~~~~~~vl~~LL~lLd~l~~~~~ViVIaTTN~~d--~Ld~aLlrpgRF~~~I~~~~P~~eE 863 (1167)
-+|+|||+..+... ....+. .++..|-..-..-++.+|.+|.++. .++..++. .|...|-|...+..+
T Consensus 299 ivlvIDE~~~ll~~-------~~~~~~-~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~d 368 (512)
T 2ius_A 299 IVVLVDEFADLMMT-------VGKKVE-ELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKID 368 (512)
T ss_dssp EEEEEETHHHHHHH-------HHHHHH-HHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHH
T ss_pred EEEEEeCHHHHHhh-------hhHHHH-HHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHH
Confidence 38999999877631 011222 2222222222223577777888876 57777766 677788888889888
Q ss_pred HHHHHH
Q 001066 864 RAAILS 869 (1167)
Q Consensus 864 R~eIL~ 869 (1167)
...||.
T Consensus 369 sr~ilg 374 (512)
T 2ius_A 369 SRTILD 374 (512)
T ss_dssp HHHHHS
T ss_pred HHHhcC
Confidence 888874
No 256
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.94 E-value=0.0031 Score=64.50 Aligned_cols=30 Identities=20% Similarity=0.545 Sum_probs=26.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEee
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVD 1141 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD 1141 (1167)
|+|.|+||+|||.+|+.|+..| | ..++..|
T Consensus 8 I~l~G~~GsGKST~~~~L~~~l-~-~~~i~~D 37 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALATGL-R-LPLLSKD 37 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH-T-CCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc-C-CeEecHH
Confidence 8999999999999999999988 4 6776655
No 257
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.93 E-value=0.0053 Score=69.00 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=36.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcc----cceEEEEeehhhHhhhcccchHHHHHHHhhhc
Q 001066 1107 GFRVLISGSPGSGQRHLAACLLHSFI----GNVEIQKVDLATISQEGRGDLVQGLTLLLSMF 1164 (1167)
Q Consensus 1107 rp~iLf~GPpGtGKT~LAkaLA~~l~----G~L~fisvD~sell~kyiGesE~nvr~iF~~~ 1164 (1167)
.|.+|||||||||||.+|.+||+.+. ...+|+-++.+. +.|| -..||+++..+
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~~~~--id~ir~li~~~ 74 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---ENIG--IDDIRTIKDFL 74 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---SCBC--HHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---CCCC--HHHHHHHHHHH
Confidence 35699999999999999999999641 024677777541 2343 33456665544
No 258
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.92 E-value=0.004 Score=63.52 Aligned_cols=30 Identities=23% Similarity=0.520 Sum_probs=27.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEee
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVD 1141 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD 1141 (1167)
|+|.|+||+|||.+|+.||..| | +.+++.|
T Consensus 6 I~l~G~~GsGKsT~a~~L~~~~-~-~~~i~~d 35 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVEKY-G-YTHLSAG 35 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH-C-CEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh-C-CeEEeHH
Confidence 8999999999999999999988 4 7888765
No 259
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.85 E-value=0.0055 Score=69.43 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=29.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLAT 1144 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~se 1144 (1167)
|+++||||+|||.||+.||+.+ + ..++++|--.
T Consensus 8 i~i~GptGsGKTtla~~La~~l-~-~~iis~Ds~q 40 (323)
T 3crm_A 8 IFLMGPTAAGKTDLAMALADAL-P-CELISVDSAL 40 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS-C-EEEEEECTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHc-C-CcEEeccchh
Confidence 8999999999999999999999 3 8999998543
No 260
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=95.84 E-value=0.0049 Score=56.81 Aligned_cols=40 Identities=8% Similarity=0.005 Sum_probs=34.6
Q ss_pred CCCCcceecCCCCCCCCCcceeccCCCCccccccCCCCCC
Q 001066 443 KQGRRCGLCGCGNDGKPPKRLIQDAGDSENEVYSGSSASE 482 (1167)
Q Consensus 443 ~~~~~C~lC~~~~~~~~~~~v~cd~c~~~vh~~c~g~~~~ 482 (1167)
+....|.+|+.++....+.+++||.|+...|+.|++....
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~ 53 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVT 53 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCC
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCccc
Confidence 3467899999887777799999999999999999987654
No 261
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.83 E-value=0.0046 Score=66.07 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=29.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQE 1148 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~k 1148 (1167)
.|+|.|+||+|||.+|+.||..| | +.+++. .+++.+
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l-~-~~~i~~--d~li~~ 53 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNF-C-VCHLAT--GDMLRA 53 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-T-CEEEEH--HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-C-CceecH--HHHHHH
Confidence 49999999999999999999988 4 666554 455543
No 262
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.82 E-value=0.0055 Score=69.13 Aligned_cols=36 Identities=17% Similarity=0.333 Sum_probs=29.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccc----ceEEEEeehhhH
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIG----NVEIQKVDLATI 1145 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G----~L~fisvD~sel 1145 (1167)
+||+||||||||.||+++++.+.. ...++.++.+..
T Consensus 48 vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 48 IFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 999999999999999999997721 267888886643
No 263
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.82 E-value=0.0067 Score=62.40 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=26.8
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHH-hhcCCCceEEEEe
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGS-CARGDKRIAYFAR 756 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~-l~~~~~~i~~~~l 756 (1167)
.+..|+|+|+||+||||+++.||.. ++ +.++..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g-----~~~id~ 42 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDG-----FQHLEV 42 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTT-----EEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC-----CEEeeH
Confidence 3457999999999999999999998 55 555543
No 264
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.79 E-value=0.0055 Score=69.78 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=29.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLA 1143 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~s 1143 (1167)
-|+++||||+|||.||..||+.| + ..||+.|-=
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l-~-~eiIs~Ds~ 74 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHF-P-LEVINSDKM 74 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTS-C-EEEEECCSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHC-C-CcEEccccc
Confidence 48999999999999999999999 3 789998754
No 265
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.79 E-value=0.01 Score=61.56 Aligned_cols=35 Identities=14% Similarity=0.369 Sum_probs=27.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQ 1147 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~ 1147 (1167)
-|+|.|+||+|||.+|+.||..| | +.+++.| .++.
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~-g-~~~i~~d--~~~~ 51 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY-S-FVHLSAG--DLLR 51 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS-S-CEEEEHH--HHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-C-ceEEeHH--HHHH
Confidence 38999999999999999999988 4 6555544 4543
No 266
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.79 E-value=0.0062 Score=69.08 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=29.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhccc--ceEEEEeehhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIG--NVEIQKVDLAT 1144 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G--~L~fisvD~se 1144 (1167)
.+||+||||||||.||++|+..+.. +..++.++.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~ 83 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 83 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc
Confidence 3999999999999999999998842 25788888544
No 267
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.79 E-value=0.0045 Score=63.00 Aligned_cols=22 Identities=23% Similarity=0.563 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSF 1131 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l 1131 (1167)
|+|.||||+|||.+|+.||..|
T Consensus 6 I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999988
No 268
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.79 E-value=0.007 Score=60.90 Aligned_cols=39 Identities=28% Similarity=0.322 Sum_probs=30.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGD 1152 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGe 1152 (1167)
|+|.|+||+|||.+|+.||..| | +.|+.. -+++.+..|.
T Consensus 10 i~l~G~~GsGKSTva~~La~~l-g-~~~id~--D~~~~~~~g~ 48 (168)
T 1zuh_A 10 LVLIGFMGSGKSSLAQELGLAL-K-LEVLDT--DMIISERVGL 48 (168)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH-T-CCEEEH--HHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHHHh-C-CCEEEC--hHHHHHHhCC
Confidence 8999999999999999999998 5 777654 4555444444
No 269
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.78 E-value=0.0074 Score=61.43 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=24.3
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
.+..|+|+|+||+||||+++.||..++
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 346799999999999999999999886
No 270
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=95.78 E-value=0.011 Score=56.71 Aligned_cols=101 Identities=19% Similarity=0.344 Sum_probs=62.2
Q ss_pred CCCCcceecCCCCC----CCCCcceeccCCCCccccccCCCCCCCCCCcccccCCCCCCcccccCCCCccccccCCceEE
Q 001066 443 KQGRRCGLCGCGND----GKPPKRLIQDAGDSENEVYSGSSASEEPNYDIWDGFGDEPGWLGRLLGPINDRYGIAGTWVH 518 (1167)
Q Consensus 443 ~~~~~C~lC~~~~~----~~~~~~v~cd~c~~~vh~~c~g~~~~~~~~~~~~~~~~~p~~~g~~lg~~~~k~t~~g~WvH 518 (1167)
.....|.+|..... ....++++|+.|+...|.+|.+...... .....+.|.=
T Consensus 3 ~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~------------------------~~~~~~~W~C 58 (112)
T 3v43_A 3 EPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELT------------------------VRVKALRWQC 58 (112)
T ss_dssp CCCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHH------------------------HHHHTSCCCC
T ss_pred ccCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHH------------------------HHhhcccccc
Confidence 34568999976532 3346899999999988888876521000 0001112222
Q ss_pred eeccccCCceEEccCccccchHHHHhhcccccccCCCCCC----CceeecCCCCCCcccccccCCCcceeccccceeccc
Q 001066 519 QHCAVWSPEVYFAGLGCLKNIRAALCRGRALKCTRCGRPG----ATIGCRVDRCPRTYHLPCARANGCIFDHRKFLIACT 594 (1167)
Q Consensus 519 ~~CAlw~pev~~~~~~~l~~i~~~~~~~~~~~C~iC~~~G----A~I~C~~~~C~~~FH~~CA~~~g~~~~~~~~~~~C~ 594 (1167)
..|. .|.+|+..| .-|.|.. |.++||..|-.-. +.......+||+
T Consensus 59 ~~C~---------------------------~C~vC~~~~~~~~~ll~Cd~--C~~~yH~~Cl~p~--l~~~P~~~W~C~ 107 (112)
T 3v43_A 59 IECK---------------------------TCSSCRDQGKNADNMLFCDS--CDRGFHMECCDPP--LTRMPKGMWICQ 107 (112)
T ss_dssp TTTC---------------------------CBTTTCCCCCTTCCCEECTT--TCCEECGGGCSSC--CSSCCSSCCCCT
T ss_pred ccCC---------------------------ccccccCcCCCccceEEcCC--CCCeeecccCCCC--CCCCCCCCeECC
Confidence 2222 789998764 5677765 9999999997532 123344478888
Q ss_pred cccc
Q 001066 595 DHRH 598 (1167)
Q Consensus 595 ~Hr~ 598 (1167)
..+.
T Consensus 108 ~C~~ 111 (112)
T 3v43_A 108 ICRP 111 (112)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 7653
No 271
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.76 E-value=0.0049 Score=65.13 Aligned_cols=36 Identities=19% Similarity=0.472 Sum_probs=28.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQE 1148 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~k 1148 (1167)
.|+|.|+||+|||.+|+.||..| | +.+++ ..+++.+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l-~-~~~i~--~d~li~~ 42 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY-G-LAHLS--TGDMLRE 42 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH-C-CEEEE--HHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-C-ceEEe--hhHHHHH
Confidence 48999999999999999999988 4 66655 4455554
No 272
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.73 E-value=0.032 Score=62.30 Aligned_cols=40 Identities=25% Similarity=0.409 Sum_probs=30.7
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhc-CCCceEEEEecc
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCAR-GDKRIAYFARKG 758 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~-~~~~i~~~~l~~ 758 (1167)
.+..++|.||+|+||||++..||..+.. ....+.++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 4567889999999999999999998864 344566655543
No 273
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.71 E-value=0.0066 Score=61.61 Aligned_cols=29 Identities=24% Similarity=0.539 Sum_probs=25.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEE
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFA 755 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~ 755 (1167)
.|+|.|+||+||||+++.||..++ +.|+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~-----~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD-----LVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT-----CEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC-----CCEEc
Confidence 589999999999999999999987 56654
No 274
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.69 E-value=0.0025 Score=73.05 Aligned_cols=55 Identities=20% Similarity=0.293 Sum_probs=44.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcccceEEEE------------------eehhhHhhhcccchHHHHHHHhhh
Q 001066 1104 KGSGFRVLISGSPGSGQRHLAACLLHSFIGNVEIQK------------------VDLATISQEGRGDLVQGLTLLLSM 1163 (1167)
Q Consensus 1104 ~~~rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fis------------------vD~sell~kyiGesE~nvr~iF~~ 1163 (1167)
.+..+.|+|+||||+|||.||++||..+ + +.|+. +|+-.++....|.+ +.+||..
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~~l-~-~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~g~~---i~~if~~ 93 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQII-N-EKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQPNK---VAEMIEN 93 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHHHH-H-HHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECCHHH---HHHHHHT
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHHHh-C-CCeeeecccccchHHHHHHHHhhhhhhhHHHHHhCcc---HHHHHHH
Confidence 4456779999999999999999999999 3 77755 88888888888776 4456643
No 275
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=95.68 E-value=0.0048 Score=53.54 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=33.6
Q ss_pred CCCcceecCCCCCCCCCcceeccCCCCccccccCCCCC
Q 001066 444 QGRRCGLCGCGNDGKPPKRLIQDAGDSENEVYSGSSAS 481 (1167)
Q Consensus 444 ~~~~C~lC~~~~~~~~~~~v~cd~c~~~vh~~c~g~~~ 481 (1167)
....|.+|+.+.....+.+++||.|+...|+.|++...
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l 42 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHI 42 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCC
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcc
Confidence 45789999988777789999999999999999999854
No 276
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.66 E-value=0.0069 Score=60.57 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=22.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
.|+|.|+||+||||+++.|+..++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999887
No 277
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.66 E-value=0.0085 Score=60.00 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=29.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhccc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRG 1151 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiG 1151 (1167)
|+|.|+||+|||.+|+.|+..| | +.++.. -++.....|
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l-~-~~~i~~--d~~~~~~~g 40 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSL-N-IPFYDV--DEEVQKREG 40 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHH-T-CCEEEH--HHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh-C-CCEEEC--cHHHHHHcC
Confidence 8999999999999999999988 4 666654 444444334
No 278
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.59 E-value=0.0092 Score=60.68 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=26.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEE
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYF 754 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~ 754 (1167)
..|+|.|+||+||||+++.|+..++.....+.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i 37 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMV 37 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEE
Confidence 4689999999999999999999887433223444
No 279
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.57 E-value=0.027 Score=61.04 Aligned_cols=28 Identities=32% Similarity=0.487 Sum_probs=24.6
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
..+..|+|.|+||+||||+++.|+..++
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4456789999999999999999999875
No 280
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.55 E-value=0.0078 Score=61.23 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=28.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccc--eEEEEeehhhHh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGN--VEIQKVDLATIS 1146 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~--L~fisvD~sell 1146 (1167)
|+|.||||+|||.+|+.|+..|. + +.+.-+++.+++
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~-~~g~~~~~~~~~~~~ 41 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILD-NQGINNKIINYGDFM 41 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH-TTTCCEEEEEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-hcCceEEEEECChHH
Confidence 89999999999999999999872 2 224445776766
No 281
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.54 E-value=0.0077 Score=61.43 Aligned_cols=30 Identities=27% Similarity=0.494 Sum_probs=25.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR 756 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l 756 (1167)
.|+|.|+||+||||+++.||..++ +.++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg-----~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG-----VGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT-----CCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC-----CCEEeC
Confidence 589999999999999999999887 455543
No 282
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.52 E-value=0.0066 Score=63.06 Aligned_cols=30 Identities=20% Similarity=0.455 Sum_probs=25.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEee
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVD 1141 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD 1141 (1167)
|+|.||||+|||.||+.|+..+ | ..++..|
T Consensus 21 I~l~G~~GsGKSTla~~L~~~l-g-~~~i~~d 50 (202)
T 3t61_A 21 IVVMGVSGSGKSSVGEAIAEAC-G-YPFIEGD 50 (202)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH-T-CCEEEGG
T ss_pred EEEECCCCCCHHHHHHHHHHHh-C-CEEEeCC
Confidence 8999999999999999999988 4 5555443
No 283
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.47 E-value=0.011 Score=59.88 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhH
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATI 1145 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sel 1145 (1167)
-|+|.||+|+|||.||++|+..+ | ..++ |+-.+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~-g-~~~i--~~d~~ 42 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQL-H-AAFL--DGDFL 42 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH-T-CEEE--EGGGG
T ss_pred EEEEEcCCCCCHHHHHHHHHHhh-C-cEEE--eCccc
Confidence 48999999999999999999988 5 4444 54444
No 284
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.44 E-value=0.011 Score=66.62 Aligned_cols=35 Identities=34% Similarity=0.434 Sum_probs=30.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhH
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATI 1145 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sel 1145 (1167)
-|+++||||+|||.||..||+.+ + ..+++.|--++
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~-~-~~iis~Ds~qv 46 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL-P-VELISVDSALI 46 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS-C-EEEEECCTTTT
T ss_pred EEEEECCCccCHHHHHHHHHHhC-C-CcEEecccccc
Confidence 37899999999999999999999 3 89999986544
No 285
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.42 E-value=0.01 Score=67.04 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=31.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATIS 1146 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell 1146 (1167)
-|+++||||+|||.||..||..+ + ..+++.|--+|.
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~-~-~~iis~Ds~QvY 40 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL-N-GEVISGDSMQVY 40 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT-T-EEEEECCGGGGB
T ss_pred EEEEECCCcCCHHHHHHHHHHhC-c-cceeecCcccce
Confidence 38899999999999999999999 3 799999876554
No 286
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.42 E-value=0.032 Score=60.05 Aligned_cols=23 Identities=30% Similarity=0.208 Sum_probs=20.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
.+||+||+|+|||.++.+++..+
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc
Confidence 49999999999999999888776
No 287
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.42 E-value=0.031 Score=62.05 Aligned_cols=27 Identities=37% Similarity=0.657 Sum_probs=23.4
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
.+.-|+|.||||+||||+++.|+..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 455688999999999999999998763
No 288
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.41 E-value=0.011 Score=59.39 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=23.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
..|+|+||+|+||||+++.||..++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999999876
No 289
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.40 E-value=0.011 Score=63.20 Aligned_cols=41 Identities=17% Similarity=0.391 Sum_probs=31.8
Q ss_pred CCce-EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcc
Q 001066 1106 SGFR-VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGR 1150 (1167)
Q Consensus 1106 ~rp~-iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyi 1150 (1167)
+.|+ |+|.||||+||+.+|+.||..| | |..|..-.||...+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~-g---~~hIstGdllR~~i 68 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF-H---FNHLSSGDLLRAEV 68 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH-C---CEEECHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH-C---CceEcHHHHHHHHH
Confidence 3443 5678999999999999999977 4 66677777776544
No 290
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.39 E-value=0.009 Score=60.10 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=26.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR 756 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l 756 (1167)
.+|+|.|+|||||||+++.||..++ ++++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg-----~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK-----LEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT-----CCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEC
Confidence 4799999999999999999999987 556543
No 291
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.38 E-value=0.0069 Score=68.50 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSF 1131 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l 1131 (1167)
+||+||||||||.||+++|+.+
T Consensus 41 ~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999987
No 292
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.38 E-value=0.016 Score=60.18 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=32.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcc--cceEEEEeehhhH---hhhcccchHH
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFI--GNVEIQKVDLATI---SQEGRGDLVQ 1155 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~--G~L~fisvD~sel---l~kyiGesE~ 1155 (1167)
-|.|.||+|+|||.||++||..+. | ...+.+|+-.+ ++..+|-+.+
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~~~G-~~~~~~d~d~~~~~~~~~~~~~~~ 77 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLYQKG-KLCYILDGDNVRHGLNRDLSFKAE 77 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEEEHHHHTTTTTTTCCSSHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcC-ceEEEecCchhhhHhhcccCcChH
Confidence 388999999999999999999872 3 22357777666 3333444433
No 293
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.36 E-value=0.003 Score=64.50 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=18.5
Q ss_pred CCCCcEEEEcCCCCcHHHHHHH
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRA 739 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAra 739 (1167)
.+..-+.|.||+|+|||||++.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3445688999999999999993
No 294
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.36 E-value=0.0074 Score=68.27 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFI 1132 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~ 1132 (1167)
+|||||||||||.+|+++|+.+.
T Consensus 27 ~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 27 LLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCchHHHHHHHHHHHHh
Confidence 89999999999999999999874
No 295
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.35 E-value=0.013 Score=64.15 Aligned_cols=40 Identities=23% Similarity=0.378 Sum_probs=32.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcc-cch
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGR-GDL 1153 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyi-Ges 1153 (1167)
|.|.||+|+|||.||++||..| | + .-+|+..++.... |.+
T Consensus 51 i~l~G~~GsGKSTl~~~La~~l-g-~--~~~d~d~~~~~~~~g~~ 91 (250)
T 3nwj_A 51 MYLVGMMGSGKTTVGKIMARSL-G-Y--TFFDCDTLIEQAMKGTS 91 (250)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH-T-C--EEEEHHHHHHHHSTTSC
T ss_pred EEEECCCCCCHHHHHHHHHHhc-C-C--cEEeCcHHHHHHhcCcc
Confidence 9999999999999999999988 4 4 5566777776666 543
No 296
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.34 E-value=0.01 Score=67.35 Aligned_cols=74 Identities=14% Similarity=0.258 Sum_probs=45.2
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc-----hh---hhchHHHHHHHHHHHHHhcCCcEEEE
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL-----GK---YVGDAERQLRLLFQVAEKCQPSIIFF 790 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll-----s~---~~g~~e~~L~~lF~~A~~~~psILfI 790 (1167)
+...++|.||+|+|||||+++|+..+......+ .+.....+ .. ++.......+..+..+....|.+|++
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i---~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilil 246 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERII---SIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIIL 246 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEE---EEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEE---EECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEE
Confidence 345799999999999999999998765322212 12111100 00 11001223445566666789999999
Q ss_pred cCCCC
Q 001066 791 DEIDG 795 (1167)
Q Consensus 791 DEID~ 795 (1167)
||.-.
T Consensus 247 dE~~~ 251 (330)
T 2pt7_A 247 GELRS 251 (330)
T ss_dssp CCCCS
T ss_pred cCCCh
Confidence 99753
No 297
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.34 E-value=0.0033 Score=76.95 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=24.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEE
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQK 1139 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fis 1139 (1167)
+||+||||||||+||++||+.+ + -.++.
T Consensus 330 vLL~GppGtGKT~LAr~la~~~-~-r~~~~ 357 (595)
T 3f9v_A 330 ILIIGDPGTAKSQMLQFISRVA-P-RAVYT 357 (595)
T ss_dssp EEEEESSCCTHHHHHHSSSTTC-S-CEECC
T ss_pred eEEECCCchHHHHHHHHHHHhC-C-Cceec
Confidence 9999999999999999999988 2 44444
No 298
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.33 E-value=0.0086 Score=68.33 Aligned_cols=41 Identities=24% Similarity=0.408 Sum_probs=33.0
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR 756 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l 756 (1167)
|+.+..-++|.|+||+|||+|+..+|..+......+.||++
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 56667779999999999999999999887655555666665
No 299
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.32 E-value=0.012 Score=59.72 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=25.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEE
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCARGDKRIAYF 754 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~ 754 (1167)
.|+|.|+||+||||+++.|+..++.....+.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 488999999999999999999987433333333
No 300
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.31 E-value=0.02 Score=62.47 Aligned_cols=50 Identities=12% Similarity=0.264 Sum_probs=34.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcc--cceEEEEeehhhHhhh---cccchHHHHHH
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFI--GNVEIQKVDLATISQE---GRGDLVQGLTL 1159 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~--G~L~fisvD~sell~k---yiGesE~nvr~ 1159 (1167)
-|+|.|+||+|||.+|+.|+..|. | ..++-++.-.+... |....|..++.
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g-~~~i~~~~D~~~~~l~~~~~~~e~~~~~ 60 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNN-IDVIVLGSDLIRESFPVWKEKYEEFIKK 60 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEECTHHHHTTSSSCCGGGHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCC-CEEEEECchHHHHHHhhhhHHHHHHHHH
Confidence 389999999999999999999731 4 66665676666544 33334544443
No 301
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.31 E-value=0.019 Score=61.90 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQE 1148 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~k 1148 (1167)
.|+|.||||+|||.+|+.|+..| | +.-|+...++-+
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~-g---~~~is~~~~~r~ 66 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH-C---YCHLSTGDLLRE 66 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-C---CEEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-C---CeEEecHHHHHH
Confidence 48999999999999999999977 4 444555555554
No 302
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.28 E-value=0.1 Score=62.55 Aligned_cols=78 Identities=15% Similarity=0.049 Sum_probs=47.4
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccc-----------------hh-hhchHHHHHHHHHHHH
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCL-----------------GK-YVGDAERQLRLLFQVA 780 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~ll-----------------s~-~~g~~e~~L~~lF~~A 780 (1167)
.+..|+|+|++|+||||++..||..+......+.++..+..... .. ...+....+...+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 35578999999999999999999888765455555555321100 00 0011222234445555
Q ss_pred HhcCCcEEEEcCCCCc
Q 001066 781 EKCQPSIIFFDEIDGL 796 (1167)
Q Consensus 781 ~~~~psILfIDEID~L 796 (1167)
.+....++|||-...+
T Consensus 180 ~~~~~DvvIIDTpG~~ 195 (504)
T 2j37_W 180 KNENFEIIIVDTSGRH 195 (504)
T ss_dssp HHTTCCEEEEEECCCC
T ss_pred HHCCCcEEEEeCCCCc
Confidence 5556789999876544
No 303
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.24 E-value=0.011 Score=60.22 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=23.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
+..|+|.|+||+||||+++.|+..++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999999876
No 304
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.23 E-value=0.012 Score=60.16 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=23.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
+..|+|.|+||+||||+++.||..++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45699999999999999999999886
No 305
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.22 E-value=0.012 Score=61.07 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=23.5
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
+..|+|.|+||+||||+++.|+..++
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44689999999999999999999886
No 306
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.21 E-value=0.012 Score=59.10 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=22.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
.|+|.|+||+||||+++.||..++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999887
No 307
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.16 E-value=0.023 Score=69.69 Aligned_cols=25 Identities=40% Similarity=0.600 Sum_probs=21.6
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
..++|+|+||||||+++..+...+.
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999998877664
No 308
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.14 E-value=0.012 Score=58.47 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
-|+|.||||+||||+++.| ..++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTT
T ss_pred EEEEECCCCCCHHHHHHHH-HHCC
Confidence 4889999999999999999 6665
No 309
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.13 E-value=0.014 Score=61.62 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=23.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
+..|+|.|+||+||||+++.||..++
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45689999999999999999999886
No 310
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.11 E-value=0.016 Score=60.19 Aligned_cols=26 Identities=31% Similarity=0.666 Sum_probs=23.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
+..|+|.|++|+||||+++.|+..++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45699999999999999999999886
No 311
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.11 E-value=0.012 Score=63.87 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=29.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhH
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATI 1145 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sel 1145 (1167)
.|+|.||||+|||.+|+.|+..+ + ..++.+|+-.+
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l-~-~~~~~~~~D~~ 68 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEF-Q-GNIVIIDGDSF 68 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHT-T-TCCEEECGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhc-C-CCcEEEecHHH
Confidence 38999999999999999999988 3 45666777665
No 312
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.07 E-value=0.015 Score=60.96 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=25.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEE
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYF 754 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~ 754 (1167)
.-.+++||.|+|||+.+-.+|..+......+-++
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 4577889999999999998888875444444444
No 313
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.05 E-value=0.014 Score=63.62 Aligned_cols=32 Identities=19% Similarity=0.097 Sum_probs=26.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG 758 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~ 758 (1167)
-++|.||||+||||||+.||..++ ..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~-----~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG-----WPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC-----CCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC-----CeEEeccH
Confidence 478999999999999999999886 45665544
No 314
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.03 E-value=0.013 Score=62.22 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=23.7
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
.+..|+|.|+||+||||+++.||..++
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346799999999999999999999876
No 315
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.00 E-value=0.015 Score=59.69 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=23.5
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
+.-|+|.|+||+||||+++.|+..++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999999886
No 316
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.00 E-value=0.041 Score=56.71 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=15.8
Q ss_pred CcEEEEcCCCCcHHHHHHH
Q 001066 721 RGVLLHGHPGTGKTLVVRA 739 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAra 739 (1167)
..+++.+|+|+|||..+-.
T Consensus 39 ~~~li~~~TGsGKT~~~~~ 57 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFAL 57 (207)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 5799999999999987433
No 317
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.00 E-value=0.017 Score=58.69 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=23.4
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
+..|+|.|+||+||||+++.|+..++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999999886
No 318
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.97 E-value=0.011 Score=62.51 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=31.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHh
Q 001066 1107 GFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATIS 1146 (1167)
Q Consensus 1107 rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell 1146 (1167)
+.+|||.||||+|||.||-.||+.+ . .+++.|.-.|.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g--~-~iIsdDs~~v~ 70 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG--H-RLIADDRVDVY 70 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT--C-EEEESSEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC--C-eEEecchhhee
Confidence 3459999999999999999999977 3 88988865554
No 319
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.97 E-value=0.014 Score=58.77 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=20.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHH
Q 001066 721 RGVLLHGHPGTGKTLVVRALIG 742 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~ 742 (1167)
.-|+|.|+||+||||+++.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4588999999999999999998
No 320
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.97 E-value=0.23 Score=55.28 Aligned_cols=78 Identities=19% Similarity=0.110 Sum_probs=47.5
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccch-----hh--------h-----chHHHHHHHHHHHH
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLG-----KY--------V-----GDAERQLRLLFQVA 780 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls-----~~--------~-----g~~e~~L~~lF~~A 780 (1167)
.+..+.|.|++|+||||++..+|..+......+.++..+...... .+ + ......++.++..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 445677889999999999999999887555555555443211100 00 0 01122234555555
Q ss_pred HhcCCcEEEEcCCCCc
Q 001066 781 EKCQPSIIFFDEIDGL 796 (1167)
Q Consensus 781 ~~~~psILfIDEID~L 796 (1167)
....+.+|+||+--.+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 5457889999986443
No 321
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.97 E-value=0.038 Score=60.14 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=22.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
+.-|+|.|+||+||||+|+.|+..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34688999999999999999999854
No 322
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.94 E-value=0.012 Score=60.28 Aligned_cols=28 Identities=36% Similarity=0.472 Sum_probs=23.5
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 717 LTPPRGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 717 l~~~~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
+.+...++|.||+|+||||+++.|+...
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 3455678999999999999999998763
No 323
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.94 E-value=0.014 Score=59.60 Aligned_cols=35 Identities=31% Similarity=0.468 Sum_probs=29.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATIS 1146 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell 1146 (1167)
+.|.||||+|||.|+++||..+ + ...+.+|+-.+.
T Consensus 12 i~l~G~~GsGKSTl~~~La~~~-~-~g~i~i~~d~~~ 46 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEALANLP-G-VPKVHFHSDDLW 46 (191)
T ss_dssp EEEEECTTSCHHHHHHHHHTCS-S-SCEEEECTTHHH
T ss_pred EEEECCCCCCHHHHHHHHHhcc-C-CCeEEEcccchh
Confidence 8999999999999999999976 2 567778876653
No 324
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.94 E-value=0.049 Score=61.68 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=28.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA 759 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~ 759 (1167)
..|+|.||+|+|||+|++.||..++ ..++..+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~-----~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP-----CELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC-----EEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC-----CcEEeccch
Confidence 4688999999999999999999886 567776554
No 325
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.92 E-value=0.018 Score=60.18 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 001066 1106 SGFRVLISGSPGSGQRHLAACLLHSF 1131 (1167)
Q Consensus 1106 ~rp~iLf~GPpGtGKT~LAkaLA~~l 1131 (1167)
+|| |+|+||+|+|||.|++.|...+
T Consensus 1 ~Rp-IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 1 SRP-IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCC-EEEECCTTSSHHHHHHHHHHHC
T ss_pred CCE-EEEECCCCCCHHHHHHHHHHhC
Confidence 478 9999999999999999998876
No 326
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.90 E-value=0.026 Score=65.33 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=23.5
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 717 LTPPRGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 717 l~~~~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
+....-+.|.||+|+|||||++.||...
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3445568899999999999999999865
No 327
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.90 E-value=0.032 Score=61.44 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=23.5
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 717 LTPPRGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 717 l~~~~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
+.+..-+.|.||+|+|||||++.|+..+
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3455668899999999999999998765
No 328
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.89 E-value=0.02 Score=61.61 Aligned_cols=35 Identities=29% Similarity=0.599 Sum_probs=27.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQ 1147 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~ 1147 (1167)
.|.|.||+|+|||.|+++||..| | +..++.-+++-
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~l-g---~~~~~~G~i~~ 63 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNF-G---LQHLSSGHFLR 63 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-C---CCCEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-C---CeEecHHHHHH
Confidence 38999999999999999999977 4 44555545543
No 329
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.86 E-value=0.017 Score=61.90 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=25.2
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 717 LTPPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 717 l~~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
+..++-|+|.||||+||+|+|+.||..++
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 35566788999999999999999999876
No 330
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.85 E-value=0.013 Score=61.89 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=24.2
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
.+..|+|.|+||+||||+++.||..++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999999886
No 331
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.84 E-value=0.011 Score=59.86 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEee
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVD 1141 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD 1141 (1167)
-|+|.|+||+|||.+|+.||..| | ..++ +|
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l-~-~~~i-~d 36 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERL-P-GSFV-FE 36 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHS-T-TCEE-CC
T ss_pred EEEEECCCCCCHHHHHHHHHHhc-C-CCEE-Ec
Confidence 38999999999999999999988 4 6676 35
No 332
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.83 E-value=0.021 Score=57.59 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
..++|.||+|+||||+++.|+..++
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 4688999999999999999998875
No 333
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.83 E-value=0.081 Score=59.78 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=31.2
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEec
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARK 757 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~ 757 (1167)
.++..++|+|++|+||||++..||..+......+-++..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4556788999999999999999999887655555555443
No 334
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.83 E-value=0.02 Score=61.17 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=23.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
+..|+|.|+||+||||+++.||..++
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35699999999999999999999986
No 335
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.81 E-value=0.018 Score=65.78 Aligned_cols=31 Identities=29% Similarity=0.408 Sum_probs=28.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeeh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDL 1142 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~ 1142 (1167)
|++.||||+|||.||+.||..| + ..+++.|-
T Consensus 10 I~I~GptgSGKTtla~~La~~l-~-~~iis~Ds 40 (340)
T 3d3q_A 10 IVIVGPTASGKTELSIEVAKKF-N-GEIISGDS 40 (340)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT-T-EEEEECCS
T ss_pred EEEECCCcCcHHHHHHHHHHHc-C-Cceecccc
Confidence 8999999999999999999999 3 88999884
No 336
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=94.80 E-value=0.013 Score=56.48 Aligned_cols=100 Identities=18% Similarity=0.355 Sum_probs=62.8
Q ss_pred CcceecCCCCC-----CCCCcceeccCCCCccccccCCCCCCCCCCcccccCCCCCCcccccCCCCccccccCCceEEee
Q 001066 446 RRCGLCGCGND-----GKPPKRLIQDAGDSENEVYSGSSASEEPNYDIWDGFGDEPGWLGRLLGPINDRYGIAGTWVHQH 520 (1167)
Q Consensus 446 ~~C~lC~~~~~-----~~~~~~v~cd~c~~~vh~~c~g~~~~~~~~~~~~~~~~~p~~~g~~lg~~~~k~t~~g~WvH~~ 520 (1167)
..|.+|..+.. .....+++|+.|+..-|..|.+..... ......+.|.-..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~------------------------~~~~~~~~W~C~~ 57 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNM------------------------TEAVKTYKWQCIE 57 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHH------------------------HHHHHHTTCCCGG
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhh------------------------hhccCCCccCccc
Confidence 46999976542 234689999999998888876543100 0001123344333
Q ss_pred ccccCCceEEccCccccchHHHHhhcccccccCCCCC---CCceeecCCCCCCcccccccCCCcceeccccceecccccc
Q 001066 521 CAVWSPEVYFAGLGCLKNIRAALCRGRALKCTRCGRP---GATIGCRVDRCPRTYHLPCARANGCIFDHRKFLIACTDHR 597 (1167)
Q Consensus 521 CAlw~pev~~~~~~~l~~i~~~~~~~~~~~C~iC~~~---GA~I~C~~~~C~~~FH~~CA~~~g~~~~~~~~~~~C~~Hr 597 (1167)
|. .|.+|++. |.-|.|. .|.++||..|-.-.- .....-.+||+.+.
T Consensus 58 C~---------------------------~C~~C~~~~~~~~ll~Cd--~C~~~yH~~Cl~ppl--~~~P~g~W~C~~C~ 106 (114)
T 2kwj_A 58 CK---------------------------SCILCGTSENDDQLLFCD--DCDRGYHMYCLNPPV--AEPPEGSWSCHLCW 106 (114)
T ss_dssp GC---------------------------CCTTTTCCTTTTTEEECS--SSCCEEETTTSSSCC--SSCCSSCCCCHHHH
T ss_pred cC---------------------------ccCcccccCCCCceEEcC--CCCccccccccCCCc--cCCCCCCeECcccc
Confidence 32 69999864 6667887 499999999986321 12334468898776
Q ss_pred ccc
Q 001066 598 HLF 600 (1167)
Q Consensus 598 ~~f 600 (1167)
..+
T Consensus 107 ~~~ 109 (114)
T 2kwj_A 107 ELL 109 (114)
T ss_dssp HHH
T ss_pred chh
Confidence 544
No 337
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.80 E-value=0.014 Score=64.77 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=26.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhH
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATI 1145 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sel 1145 (1167)
|+|+||||+|||.||+.|+..+. -.++.|+.-++
T Consensus 36 ivl~G~sGsGKSTla~~L~~~~~--~~~~~Is~D~~ 69 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDNDTF 69 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHHHTT--TCCEEECTHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CCeEEEechHh
Confidence 89999999999999999999873 24566655333
No 338
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.78 E-value=0.017 Score=57.80 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=22.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
.|+|.|+||+||||+++.|+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999887
No 339
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.75 E-value=0.02 Score=58.30 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
..|+|.|+||+||||+++.||..++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999999876
No 340
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.75 E-value=0.015 Score=60.90 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=22.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
.|+|.||||+||||+++.||..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998876
No 341
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.74 E-value=0.018 Score=62.07 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=24.3
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
++..|+|.||||+||||+++.|+..++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999998876
No 342
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.74 E-value=0.016 Score=60.57 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=22.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
.|+|.||||+||||+++.|+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999886
No 343
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.71 E-value=0.079 Score=63.27 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=28.4
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEE
Q 001066 717 LTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAY 753 (1167)
Q Consensus 717 l~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~ 753 (1167)
+..+..++|.|++|+|||||++.||..+......+.+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l 326 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML 326 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEE
Confidence 3445568899999999999999999987654444443
No 344
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.71 E-value=0.017 Score=61.00 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=26.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR 756 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l 756 (1167)
..|+|.|+||+||||+++.||..++ +.++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~-----~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG-----LAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC-----CEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC-----ceEEeh
Confidence 4689999999999999999999886 455543
No 345
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.71 E-value=0.11 Score=58.95 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=30.7
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEec
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARK 757 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~ 757 (1167)
.++.-+.|.||+|+||||+++.||..+......+.+...+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D 166 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASD 166 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeec
Confidence 3456688999999999999999999887655555555443
No 346
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.68 E-value=0.074 Score=55.65 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=17.7
Q ss_pred CcEEEEcCCCCcHHHHH-HHHHHHh
Q 001066 721 RGVLLHGHPGTGKTLVV-RALIGSC 744 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLA-raLA~~l 744 (1167)
..+++.+|+|+|||..+ -.+...+
T Consensus 52 ~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 57999999999999773 3333333
No 347
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.64 E-value=0.02 Score=59.27 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=23.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
+..|+|.|+||+||||+++.|+..++
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34688999999999999999998876
No 348
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.63 E-value=0.12 Score=53.30 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
..+++.+|+|+|||.++-.++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999988776653
No 349
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.61 E-value=0.022 Score=59.15 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=26.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhH
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATI 1145 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sel 1145 (1167)
|.|.||+|+|||.||++|+..+ | .+.||+-.+
T Consensus 32 i~l~G~~GsGKSTl~~~L~~~~-g---~~~i~~d~~ 63 (200)
T 4eun_A 32 VVVMGVSGSGKTTIAHGVADET-G---LEFAEADAF 63 (200)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH-C---CEEEEGGGG
T ss_pred EEEECCCCCCHHHHHHHHHHhh-C---CeEEccccc
Confidence 8999999999999999999988 5 455666555
No 350
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.58 E-value=0.069 Score=68.38 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=22.1
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHH
Q 001066 717 LTPPRGVLLHGHPGTGKTLVVRALIGS 743 (1167)
Q Consensus 717 l~~~~~VLL~GPpGTGKTtLAraLA~~ 743 (1167)
+....-++|+||.|+||||+.+.|+..
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 344567899999999999999998743
No 351
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.58 E-value=0.03 Score=57.22 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=27.6
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEE
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYF 754 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~ 754 (1167)
.+..|+|.|++|+||||+++.||..+......+.++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 445688999999999999999999887543333333
No 352
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.55 E-value=0.028 Score=58.43 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=23.8
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
++..++|.||+|+||||+++.|+..++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 345688999999999999999999885
No 353
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.53 E-value=0.014 Score=59.03 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=19.4
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
+..|+|.|+||+||||+++.|+..++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34689999999999999999999887
No 354
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.51 E-value=0.075 Score=61.07 Aligned_cols=28 Identities=36% Similarity=0.553 Sum_probs=23.4
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 717 LTPPRGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 717 l~~~~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
+....-+.|.||+|+|||||++.||...
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3445568899999999999999999865
No 355
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.50 E-value=0.027 Score=58.63 Aligned_cols=34 Identities=32% Similarity=0.386 Sum_probs=27.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcccceEEEEee
Q 001066 1107 GFRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVD 1141 (1167)
Q Consensus 1107 rp~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD 1141 (1167)
+.-|.++||||+|||.||+.|+..+. ++.++..|
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~-~~~~i~~D 54 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLP-NCSVISQD 54 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTST-TEEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC-CcEEEeCC
Confidence 33488999999999999999999773 26666655
No 356
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.49 E-value=0.029 Score=57.71 Aligned_cols=30 Identities=33% Similarity=0.445 Sum_probs=25.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEee
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVD 1141 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD 1141 (1167)
-|.++|++|+|||.+|+.||.. | +.+|..|
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~--g-~~~id~d 39 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW--G-YPVLDLD 39 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT--T-CCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC--C-CEEEccc
Confidence 4899999999999999999995 5 5665544
No 357
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.49 E-value=0.018 Score=62.74 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFI 1132 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~ 1132 (1167)
|++.||||+|||.||++||..+.
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhcCC
Confidence 79999999999999999998873
No 358
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.49 E-value=0.025 Score=59.89 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=22.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
.|+|.||||+||+|+|+.||..++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478899999999999999999886
No 359
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.46 E-value=0.027 Score=63.50 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=29.5
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC 761 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l 761 (1167)
+.-|+|.||+|+|||+|+..||..++ ..+++.+...+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~-----~~iis~Ds~qv 46 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP-----VELISVDSALI 46 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC-----EEEEECCTTTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC-----CcEEecccccc
Confidence 34578899999999999999999876 56676665544
No 360
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.46 E-value=0.026 Score=57.49 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=27.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc--ccceEEEEeeh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSF--IGNVEIQKVDL 1142 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l--~G~L~fisvD~ 1142 (1167)
|.|.|+||+|||.+|+.|+..| .| +.++..|-
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g-~~~i~~d~ 36 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKG-YFVSLYRE 36 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTT-CCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEeC
Confidence 7999999999999999999987 23 77888773
No 361
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.45 E-value=0.09 Score=63.22 Aligned_cols=29 Identities=41% Similarity=0.538 Sum_probs=23.4
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHH--HHHHh
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRA--LIGSC 744 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAra--LA~~l 744 (1167)
++++...++|.||+|+|||||++. ++..+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 345667899999999999999999 44544
No 362
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.42 E-value=0.032 Score=57.89 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=25.4
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCC
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDK 749 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~ 749 (1167)
+..|+|.|++|+||||+++.|+..++....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~ 38 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGH 38 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 456899999999999999999998875433
No 363
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.39 E-value=0.37 Score=56.52 Aligned_cols=78 Identities=19% Similarity=0.089 Sum_probs=48.7
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccch-----hhh-------------chHHHHHHHHHHHH
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLG-----KYV-------------GDAERQLRLLFQVA 780 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls-----~~~-------------g~~e~~L~~lF~~A 780 (1167)
++..++|.|++|+||||++..||..+......+.++..+...... .+. ......+...+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 455688889999999999999999987665556665554322110 000 01122235556666
Q ss_pred HhcCCcEEEEcCCCCc
Q 001066 781 EKCQPSIIFFDEIDGL 796 (1167)
Q Consensus 781 ~~~~psILfIDEID~L 796 (1167)
+.....+++||=...+
T Consensus 177 ~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 177 RLEARDLILVDTAGRL 192 (425)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HHCCCCEEEEcCCCcc
Confidence 5456789999865443
No 364
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.39 E-value=0.26 Score=57.99 Aligned_cols=77 Identities=18% Similarity=0.147 Sum_probs=50.2
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcC-CCceEEEEecccccchh-----h---------h----chHHHHHHHHHHH
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARG-DKRIAYFARKGADCLGK-----Y---------V----GDAERQLRLLFQV 779 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~-~~~i~~~~l~~~~lls~-----~---------~----g~~e~~L~~lF~~ 779 (1167)
++..|++.|++|+||||++..||..+... ..++.++..+....... + . ......+...+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45678889999999999999999998876 66666666653211000 0 0 0123333556666
Q ss_pred HHhcCCcEEEEcCCCC
Q 001066 780 AEKCQPSIIFFDEIDG 795 (1167)
Q Consensus 780 A~~~~psILfIDEID~ 795 (1167)
+......++|||=...
T Consensus 179 ~~~~~~D~VIIDTpG~ 194 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGR 194 (433)
T ss_dssp HHHTTCSEEEEECCCC
T ss_pred HHhCCCCEEEEECCCc
Confidence 6655678999987543
No 365
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.37 E-value=0.056 Score=68.16 Aligned_cols=58 Identities=19% Similarity=0.215 Sum_probs=32.5
Q ss_pred CcccccChHHHHHHHHHHHHccccCh--hhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHH
Q 001066 684 GFESVAGLQDVIRCMKEVVILPLLYP--EFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGS 743 (1167)
Q Consensus 684 ~~ddL~Gle~~k~~L~e~l~~pl~~~--e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~ 743 (1167)
.|+++.--..+.+.+...-.+|.... .+... +.....+++.||+|+|||+++..++..
T Consensus 73 ~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~--l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 73 PFTGREFTPKYVDILKIRRELPVHAQRDEFLKL--YQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp TTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHH--HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CccccCCCHHHHHHHHHhhcCChHHHHHHHHHH--HhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45555444445555544433443211 11111 122356999999999999977777554
No 366
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.36 E-value=0.41 Score=53.55 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=29.0
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEE
Q 001066 717 LTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYF 754 (1167)
Q Consensus 717 l~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~ 754 (1167)
+.++..+.|.||+|+||||+++.||..+......+.+.
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~ 134 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMA 134 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 34556788999999999999999999886544444443
No 367
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.34 E-value=0.099 Score=61.26 Aligned_cols=74 Identities=14% Similarity=0.175 Sum_probs=42.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccch-----hhhchHHHHHHHHHHHHHhcCCcEEEEcCCC
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLG-----KYVGDAERQLRLLFQVAEKCQPSIIFFDEID 794 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls-----~~~g~~e~~L~~lF~~A~~~~psILfIDEID 794 (1167)
..++|.||+|+||||++++++..+......+.++.-....... .+.......+...+..+....|.+|++.||-
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 3578999999999999999999886543334433321110000 0000111112233334444689999999875
No 368
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.33 E-value=0.02 Score=59.13 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEee
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVD 1141 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD 1141 (1167)
-|.+.|++|+|||.+|+.||..| | +.++..|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l-g-~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL-G-VPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-T-CCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc-C-Cceeccc
Confidence 38999999999999999999999 5 8888876
No 369
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.32 E-value=0.041 Score=63.16 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=23.0
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
....-+.|.||+|+|||||++.||..+
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 444568899999999999999999865
No 370
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.32 E-value=0.02 Score=63.08 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=27.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeeh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDL 1142 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~ 1142 (1167)
|+|.|+||+|||.+|+.|+..+.| +.+++.|.
T Consensus 5 I~l~G~~GsGKST~a~~L~~~~~~-~~~i~~D~ 36 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIAKNPG-FYNINRDD 36 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSTT-EEEECHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCC-cEEecccH
Confidence 899999999999999999997533 77887774
No 371
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.31 E-value=0.079 Score=63.70 Aligned_cols=82 Identities=27% Similarity=0.424 Sum_probs=50.9
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc--ccc----------------------hhhh--chH
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA--DCL----------------------GKYV--GDA 769 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~--~ll----------------------s~~~--g~~ 769 (1167)
++.+...++|.||+|+|||+|++.++.........+.++..... .+. ..+. -..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 55666779999999999999999999876543222323322110 000 0000 023
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCCCcC
Q 001066 770 ERQLRLLFQVAEKCQPSIIFFDEIDGLA 797 (1167)
Q Consensus 770 e~~L~~lF~~A~~~~psILfIDEID~L~ 797 (1167)
....+.++..+....|.+|+||=+..|.
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld 384 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALA 384 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHT
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHH
Confidence 4455666777777899999999555444
No 372
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.30 E-value=0.12 Score=57.76 Aligned_cols=77 Identities=17% Similarity=0.087 Sum_probs=48.4
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecccccch-----hh-------------hchHHHHHHHHHHHHH
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADCLG-----KY-------------VGDAERQLRLLFQVAE 781 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~lls-----~~-------------~g~~e~~L~~lF~~A~ 781 (1167)
+..++|.|++|+||||++..+|..+......+.++..+...... .+ .......+..++..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 45678899999999999999999887655556655554221100 00 0122333445666666
Q ss_pred hcCCcEEEEcCCCCc
Q 001066 782 KCQPSIIFFDEIDGL 796 (1167)
Q Consensus 782 ~~~psILfIDEID~L 796 (1167)
+....+|+||=...+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 557789999875443
No 373
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.29 E-value=0.033 Score=57.72 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=26.4
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCce
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRI 751 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i 751 (1167)
+.-|+|.|++|+||||+++.|+..++.....+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 45689999999999999999999887544333
No 374
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.27 E-value=0.024 Score=59.58 Aligned_cols=35 Identities=20% Similarity=0.426 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQ 1147 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~ 1147 (1167)
.|.|.||+|+|||.+|+.|+..| | +.+ +|.-.++-
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~-g-~~~--~d~g~i~~ 41 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL-Q-WHL--LDSGAIYR 41 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-T-CEE--EEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-C-CCc--ccCcceee
Confidence 48999999999999999999988 4 444 56555553
No 375
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.26 E-value=0.024 Score=58.55 Aligned_cols=26 Identities=19% Similarity=0.149 Sum_probs=23.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhc
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCAR 746 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~ 746 (1167)
.-|+|.|+||+||||+++.|+..++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 45889999999999999999998874
No 376
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.25 E-value=0.045 Score=62.89 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=23.4
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 717 LTPPRGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 717 l~~~~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
+....-+.|.||+|+|||||.+.||...
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3445568899999999999999999865
No 377
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.21 E-value=0.024 Score=59.36 Aligned_cols=22 Identities=18% Similarity=0.584 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSF 1131 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l 1131 (1167)
|+|.||||+|||.+|+.||..|
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998764
No 378
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.20 E-value=0.026 Score=58.21 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=27.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeeh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDL 1142 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~ 1142 (1167)
|.|.|+||+|||.+|+.||..|.| +.++.++-
T Consensus 7 I~l~G~~GsGKsT~~~~L~~~l~g-~~~~~~~~ 38 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIMESIPA-NTIKYLNF 38 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHHTSCG-GGEEEEES
T ss_pred EEEEcCCCCCHHHHHHHHHHHHCC-CceEEEec
Confidence 899999999999999999998832 66777664
No 379
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.17 E-value=0.024 Score=56.24 Aligned_cols=21 Identities=43% Similarity=0.740 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSF 1131 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l 1131 (1167)
|+|.||||+|||.+|+.| ..+
T Consensus 4 I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEECCCCCCHHHHHHHH-HHC
Confidence 899999999999999999 544
No 380
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.16 E-value=0.079 Score=58.63 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=23.4
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 717 LTPPRGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 717 l~~~~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
+.+..-+.|.||+|+|||||++.|+..+
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3445568899999999999999998765
No 381
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.14 E-value=0.055 Score=62.06 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=33.7
Q ss_pred cChHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 689 AGLQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 689 ~Gle~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
+.++...+.+...+...+. -....+|+|+|++|+||||++++||..++
T Consensus 2 ~~~~~L~~~il~~l~~~i~---------~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE---------DNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT---------TCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc---------cCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4456666666666543211 01224699999999999999999999887
No 382
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.13 E-value=0.069 Score=58.40 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=23.6
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 717 LTPPRGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 717 l~~~~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
+.+...+.|.||.|+|||||++.|+..+
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4455668899999999999999998764
No 383
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.12 E-value=0.41 Score=54.96 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=29.0
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEE
Q 001066 717 LTPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYF 754 (1167)
Q Consensus 717 l~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~ 754 (1167)
+.++..+.|.||+|+||||+++.||..+......+.+.
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~ 191 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMA 191 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEe
Confidence 34556788999999999999999999886544444443
No 384
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.12 E-value=0.064 Score=54.43 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=29.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc--ccceEEEEeehhhH
Q 001066 1110 VLISGSPGSGQRHLAACLLHSF--IGNVEIQKVDLATI 1145 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l--~G~L~fisvD~sel 1145 (1167)
|.|.|++|+|||.+|++|+..| .| +.++.+|.-.+
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l~~~g-~~~i~~d~~~~ 44 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYLVCHG-IPCYTLDGDNI 44 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhCC-CcEEEECChHH
Confidence 8999999999999999999976 23 67888886554
No 385
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.10 E-value=0.028 Score=65.43 Aligned_cols=31 Identities=29% Similarity=0.541 Sum_probs=28.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeeh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDL 1142 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~ 1142 (1167)
|+++||||+|||.||..||..| + ..+++.|-
T Consensus 5 i~i~GptgsGKttla~~La~~~-~-~~iis~Ds 35 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKF-N-GEVINSDS 35 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHH-T-EEEEECCT
T ss_pred EEEECcchhhHHHHHHHHHHHC-C-CeEeecCc
Confidence 7899999999999999999999 3 78999875
No 386
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.09 E-value=0.028 Score=58.42 Aligned_cols=28 Identities=21% Similarity=0.200 Sum_probs=24.3
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
.++..|.|.||+|+||||+++.||..+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456688999999999999999999885
No 387
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.08 E-value=0.03 Score=58.38 Aligned_cols=28 Identities=14% Similarity=0.364 Sum_probs=24.4
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
..+..|+|.||||+||||+++.|+..+.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4556799999999999999999998774
No 388
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.06 E-value=0.027 Score=59.12 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=22.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
.|+|.|+||+||||+++.|+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999886
No 389
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.04 E-value=0.061 Score=61.86 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=23.4
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 717 LTPPRGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 717 l~~~~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
+....-+.|.||+|+|||||++.||..+
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3445568899999999999999999865
No 390
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.02 E-value=0.028 Score=60.77 Aligned_cols=33 Identities=21% Similarity=0.495 Sum_probs=27.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhH
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATI 1145 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sel 1145 (1167)
.|.|.||||+|||.||+.||..| | +.+ +|.-.+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l-g-~~~--~d~g~~ 43 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL-G-ARY--LDTGAM 43 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-T-CEE--EEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-C-CCc--ccCCcH
Confidence 48999999999999999999988 4 444 666666
No 391
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.00 E-value=0.027 Score=58.86 Aligned_cols=22 Identities=23% Similarity=0.644 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSF 1131 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l 1131 (1167)
|+|.||||+|||.+|+.||..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998754
No 392
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.99 E-value=0.044 Score=57.57 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
..|.|.||+|+||||+++.|+..++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999999876
No 393
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.97 E-value=0.044 Score=56.00 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=28.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhccc-ceEEEEeehhhHh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIG-NVEIQKVDLATIS 1146 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G-~L~fisvD~sell 1146 (1167)
-|+|.|+||+|||.+|+.||..|.. ...++-+|+-.+-
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~ 53 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWAR 53 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHH
Confidence 3899999999999999999998730 0234556665553
No 394
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.97 E-value=0.083 Score=55.62 Aligned_cols=33 Identities=12% Similarity=0.029 Sum_probs=23.8
Q ss_pred CcEEEEcCCCCcHH-HHHHHHHHHhhcCCCceEEE
Q 001066 721 RGVLLHGHPGTGKT-LVVRALIGSCARGDKRIAYF 754 (1167)
Q Consensus 721 ~~VLL~GPpGTGKT-tLAraLA~~l~~~~~~i~~~ 754 (1167)
.-.+++||.|+||| .|.+++.+..... ..+.++
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~-~kvl~~ 54 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQ-YKCLVI 54 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTT-CCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEE
Confidence 34778999999999 8888887766543 334444
No 395
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.95 E-value=0.057 Score=62.18 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=23.5
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 717 LTPPRGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 717 l~~~~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
+.+..-+.|.||+|+|||||++.|+..+
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3455668899999999999999998764
No 396
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=93.95 E-value=0.12 Score=49.37 Aligned_cols=95 Identities=13% Similarity=0.208 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCcceecCCCCCCCCCcceecc--CCCCccccccCCCCCCCCCCcccccCCCCCCcccccCCCCccccccC
Q 001066 436 TLGWPRIKQGRRCGLCGCGNDGKPPKRLIQD--AGDSENEVYSGSSASEEPNYDIWDGFGDEPGWLGRLLGPINDRYGIA 513 (1167)
Q Consensus 436 ~~~~~~~~~~~~C~lC~~~~~~~~~~~v~cd--~c~~~vh~~c~g~~~~~~~~~~~~~~~~~p~~~g~~lg~~~~k~t~~ 513 (1167)
............|.+|+ ...+++.|| .|+..-|..|.++...|.+.|++..
T Consensus 6 ~~~~~~~~~~~~C~~C~-----~~G~ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~---------------------- 58 (107)
T 4gne_A 6 IKTEPKQMHEDYCFQCG-----DGGELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPW---------------------- 58 (107)
T ss_dssp ----CCCSSCSSCTTTC-----CCSEEEECCSTTCCCEECTGGGTCSSCCSSCCCCGG----------------------
T ss_pred ccCCCcCCCCCCCCcCC-----CCCcEeEECCCCCCcccccccCcCCcCCCCCEECCC----------------------
Q ss_pred CceEEeeccccCCceEEccCccccchHHHHhhcccccccCCCCCCCceeecCCCCCCcccccccCCCcceeccccceecc
Q 001066 514 GTWVHQHCAVWSPEVYFAGLGCLKNIRAALCRGRALKCTRCGRPGATIGCRVDRCPRTYHLPCARANGCIFDHRKFLIAC 593 (1167)
Q Consensus 514 g~WvH~~CAlw~pev~~~~~~~l~~i~~~~~~~~~~~C~iC~~~GA~I~C~~~~C~~~FH~~CA~~~g~~~~~~~~~~~C 593 (1167)
-.|.+|++... +.|.. |.++||.-|...+-.......+ +.|
T Consensus 59 -----------------------------------c~C~~C~k~~~-~~C~~--Cp~sfC~~c~~g~l~~~~~~~~-~c~ 99 (107)
T 4gne_A 59 -----------------------------------HQCDECSSAAV-SFCEF--CPHSFCKDHEKGALVPSALEGR-LCC 99 (107)
T ss_dssp -----------------------------------GBCTTTCSBCC-EECSS--SSCEECTTTCTTSCEECTTTTC-EEC
T ss_pred -----------------------------------CCCCcCCCCCC-cCcCC--CCcchhhhccCCcceecCCCCc-eec
Q ss_pred ccc
Q 001066 594 TDH 596 (1167)
Q Consensus 594 ~~H 596 (1167)
..|
T Consensus 100 ~~~ 102 (107)
T 4gne_A 100 SEH 102 (107)
T ss_dssp TTS
T ss_pred CCC
No 397
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.94 E-value=0.025 Score=69.21 Aligned_cols=22 Identities=32% Similarity=0.670 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSF 1131 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l 1131 (1167)
+||+||||||||+||++||..+
T Consensus 63 vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 63 VLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp EEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEeCCCCCHHHHHHHHhccC
Confidence 9999999999999999999977
No 398
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.90 E-value=0.16 Score=54.01 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=17.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHH
Q 001066 721 RGVLLHGHPGTGKTLVVRALIG 742 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~ 742 (1167)
..+++.||+|+|||+++..+..
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHh
Confidence 5799999999999987665543
No 399
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.90 E-value=0.039 Score=56.14 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
.|.|.|++|+||||+++.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999883
No 400
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.89 E-value=0.032 Score=59.88 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=23.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
+..+.|.||+|+||||+++.|+..++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999998876
No 401
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.87 E-value=0.06 Score=56.76 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSF 1131 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l 1131 (1167)
|.|+||+|+|||.|+++|+..+
T Consensus 22 ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 22 LVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhhC
Confidence 8999999999999999999876
No 402
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.87 E-value=0.058 Score=56.45 Aligned_cols=36 Identities=22% Similarity=0.516 Sum_probs=28.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEG 1149 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~ky 1149 (1167)
|.++|++|+|||.+|+.|+..| | +.+ ||+-.+.-..
T Consensus 15 IgltG~~GSGKSTva~~L~~~l-g-~~v--id~D~~~~~~ 50 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKY-G-AHV--VNVDRIGHEV 50 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH-C-CEE--EEHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc-C-CEE--EECcHHHHHH
Confidence 8999999999999999999987 5 555 5555554433
No 403
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.82 E-value=0.05 Score=62.84 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=23.0
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
....-+.|.||+|+|||||++.||..+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 445568899999999999999999865
No 404
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.80 E-value=0.032 Score=57.27 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=22.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
.|.|.|++|+||||+++.||..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 478999999999999999999987
No 405
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.76 E-value=0.036 Score=58.07 Aligned_cols=31 Identities=10% Similarity=0.253 Sum_probs=28.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeeh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDL 1142 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~ 1142 (1167)
|.|+|++|+|||.+|+.||..| | +.++..|-
T Consensus 6 i~i~G~~gsGkst~~~~l~~~~-g-~~~~~~d~ 36 (219)
T 2h92_A 6 IALDGPAAAGKSTIAKRVASEL-S-MIYVDTGA 36 (219)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT-T-CEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc-C-CceecCCh
Confidence 8999999999999999999999 5 88888754
No 406
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.75 E-value=0.031 Score=57.68 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=25.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccce-EEEEee
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNV-EIQKVD 1141 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L-~fisvD 1141 (1167)
-|+|.|+||+|||.+|+.||..| +.. .++..+
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l-~~~g~~~~~~ 38 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWI-ELKRDVYLTE 38 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-TTTSCEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH-hhcCCEEEec
Confidence 38999999999999999999988 321 355544
No 407
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.72 E-value=0.033 Score=57.42 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=23.4
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
.++..+.|.||+|+||||+++.|+..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 345678899999999999999999876
No 408
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.72 E-value=0.045 Score=58.08 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=22.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
.|+|.|+||+||||+++.|+..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999999886
No 409
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.72 E-value=0.04 Score=56.40 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=24.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEE
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQK 1139 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fis 1139 (1167)
++|.||+|+|||.|+++|+..+.| -.++.
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~~g-~~~i~ 33 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQLDN-SAYIE 33 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSS-EEEEE
T ss_pred EEEECCCCCcHHHHHHHHhcccCC-eEEEc
Confidence 789999999999999999997754 34444
No 410
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.67 E-value=0.044 Score=62.60 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=28.1
Q ss_pred eEEE--EcCCCCcHHHHHHHHHHhccc-------ceEEEEeehh
Q 001066 1109 RVLI--SGSPGSGQRHLAACLLHSFIG-------NVEIQKVDLA 1143 (1167)
Q Consensus 1109 ~iLf--~GPpGtGKT~LAkaLA~~l~G-------~L~fisvD~s 1143 (1167)
.+|+ |||||||||.||+++++.+.. +..++.++..
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAF 95 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGG
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECC
Confidence 3888 999999999999999987631 2567888753
No 411
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.67 E-value=0.021 Score=59.25 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSF 1131 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l 1131 (1167)
-|.|.|+||+|||.+|+.|+..|
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999987
No 412
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.67 E-value=0.062 Score=57.41 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=24.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEE
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCARGDKRIAYF 754 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~ 754 (1167)
-.+++||.|+|||+.+-.++..+......+-++
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~ 62 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVF 62 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 355789999999999988888775554444444
No 413
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.65 E-value=0.1 Score=59.37 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=22.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
.-|+|.||+|+|||+|+..||..++
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 4688999999999999999999876
No 414
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.62 E-value=0.099 Score=67.09 Aligned_cols=24 Identities=17% Similarity=0.044 Sum_probs=20.4
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHH
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIG 742 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~ 742 (1167)
...-++|+||.|+||||+.+.||.
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999854
No 415
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.60 E-value=0.039 Score=57.12 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=24.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR 756 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l 756 (1167)
.|.|.|++|+||||+++.||. ++ +.++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g-----~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG-----AYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT-----CEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC-----CEEEEc
Confidence 488999999999999999998 65 555554
No 416
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.60 E-value=0.042 Score=62.98 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=23.4
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 717 LTPPRGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 717 l~~~~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
+....-+.|.||+|+|||||++.||...
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3445568899999999999999999864
No 417
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.57 E-value=0.036 Score=57.78 Aligned_cols=22 Identities=27% Similarity=0.597 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSF 1131 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l 1131 (1167)
|+|+||||+|||.|++.|+..+
T Consensus 15 i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp EEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999999987
No 418
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.53 E-value=0.042 Score=56.23 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=22.4
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
..-+.|.||+|+|||||++.|+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35688999999999999999998753
No 419
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.51 E-value=0.15 Score=59.59 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=23.7
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
..+.-|+|+|+||+||||+|+.|+..++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3455688999999999999999998765
No 420
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.50 E-value=0.057 Score=58.51 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=29.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHh
Q 001066 1108 FRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATIS 1146 (1167)
Q Consensus 1108 p~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell 1146 (1167)
..|-|.||+|+|||.||+.||..| | +.-+|.-.++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L-g---~~~~d~g~i~ 62 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL-N---WRLLDSGAIY 62 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT-T---CEEEEHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc-C---CCcCCCCcee
Confidence 348999999999999999999988 5 5666777776
No 421
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.50 E-value=0.052 Score=55.09 Aligned_cols=26 Identities=38% Similarity=0.323 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
+..|.|.|++|+||||+++.|+..+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45688999999999999999999873
No 422
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.48 E-value=0.053 Score=56.67 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSF 1131 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l 1131 (1167)
+.|+||+|+|||.|+++|+..+
T Consensus 28 ~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999854
No 423
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.47 E-value=0.034 Score=60.72 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=24.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
...|.|.|++|+||||+++.||..++
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999999987
No 424
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.47 E-value=0.17 Score=57.64 Aligned_cols=38 Identities=29% Similarity=0.368 Sum_probs=29.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEec
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARK 757 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~ 757 (1167)
...|.|.|+||+|||||+..++..+......+.++..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 45688999999999999999998876555555555544
No 425
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.46 E-value=0.065 Score=63.06 Aligned_cols=37 Identities=27% Similarity=0.293 Sum_probs=28.4
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR 756 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l 756 (1167)
+..|+|+|++|+||||++..||..+......+.++..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 4679999999999999999999987644344444443
No 426
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.46 E-value=0.087 Score=59.21 Aligned_cols=29 Identities=28% Similarity=0.476 Sum_probs=24.5
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
.+.+...+.|.||+|+|||||++.|+..+
T Consensus 76 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 76 TVMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 34566779999999999999999998764
No 427
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.30 E-value=0.042 Score=58.14 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSF 1131 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l 1131 (1167)
|+|.||||+||+.+|+.||+.|
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999875
No 428
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.28 E-value=0.042 Score=56.34 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=28.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEG 1149 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~ky 1149 (1167)
|.|.|+||+|||.+|+.||+.|...+.....++..++..|
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~ 42 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQY 42 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHH
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHH
Confidence 8999999999999999999965433333444443444444
No 429
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.27 E-value=0.053 Score=56.54 Aligned_cols=34 Identities=12% Similarity=0.245 Sum_probs=26.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---ccceEEEEeehh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSF---IGNVEIQKVDLA 1143 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l---~G~L~fisvD~s 1143 (1167)
++|+||||+|||.|+++||..+ .|++-++..+++
T Consensus 26 ~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 26 IALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES 62 (235)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC
Confidence 8999999999999999999654 234666666553
No 430
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.27 E-value=0.046 Score=57.31 Aligned_cols=30 Identities=27% Similarity=0.552 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEee
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVD 1141 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD 1141 (1167)
-|.|.|++|+|||.+|+.|+. + | ..++..|
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-l-g-~~~id~D 35 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-L-G-INVIDAD 35 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-T-T-CEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-c-C-CEEEEcc
Confidence 389999999999999999998 7 5 7888775
No 431
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.27 E-value=0.058 Score=55.09 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 001066 723 VLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 723 VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
|.|.|++|+||||+++.|+..+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999883
No 432
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.27 E-value=0.049 Score=56.19 Aligned_cols=30 Identities=23% Similarity=0.459 Sum_probs=25.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR 756 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l 756 (1167)
.|.|.|++|+||||+++.||..++ ++++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg-----~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG-----VPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-----CCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC-----Cceecc
Confidence 588999999999999999999887 555543
No 433
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.25 E-value=0.041 Score=57.72 Aligned_cols=22 Identities=18% Similarity=0.569 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSF 1131 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l 1131 (1167)
|+|.||||+|||.+|+.||..|
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999854
No 434
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.24 E-value=0.064 Score=58.00 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=23.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
+..|.|.||+|+||||+++.||..++
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45689999999999999999999887
No 435
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.23 E-value=0.058 Score=56.51 Aligned_cols=36 Identities=28% Similarity=0.436 Sum_probs=28.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcc---cceEEEEeehhhHh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFI---GNVEIQKVDLATIS 1146 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~---G~L~fisvD~sell 1146 (1167)
|+|.|+||+|||.+|+.|+..|. | ..++.+|+-.+.
T Consensus 28 i~~~G~~GsGKsT~~~~l~~~l~~~~g-~~~~~~~~d~~r 66 (211)
T 1m7g_A 28 IWLTGLSASGKSTLAVELEHQLVRDRR-VHAYRLDGDNIR 66 (211)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHC-CCEEEECHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhccccC-CcEEEECChHHh
Confidence 89999999999999999999772 2 347777765553
No 436
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.16 E-value=0.052 Score=55.92 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=22.4
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
+..-+.|.||+|+|||||++.|+..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34568899999999999999999875
No 437
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.15 E-value=0.048 Score=56.04 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHH
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGS 743 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~ 743 (1167)
+..|.|.|++|+||||+++.||..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 456889999999999999999986
No 438
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.14 E-value=0.049 Score=63.02 Aligned_cols=33 Identities=36% Similarity=0.419 Sum_probs=27.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLA 1143 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~s 1143 (1167)
.++|+||||+|||.|+++||..+.| .++.+.+|
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~~g--~~~~~~~~ 203 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELCGG--KALNVNLP 203 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC--EEECCSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCC--cEEEEecc
Confidence 3899999999999999999998854 56555544
No 439
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.13 E-value=0.047 Score=57.25 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=23.1
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
++.-+.|.||+|+|||||++.|+..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999998764
No 440
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.13 E-value=0.043 Score=59.23 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=29.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceE--------EEEeehhhHhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVE--------IQKVDLATISQ 1147 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~--------fisvD~sell~ 1147 (1167)
.|.+.|++|+|||.+|+.||..| | +. ++-|++-.++.
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l-g-~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL-G-QNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT-T-GGGSCGGGCSEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-h-hhcccccCCceEEEecCcccc
Confidence 48999999999999999999988 4 43 33566666654
No 441
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=93.12 E-value=0.13 Score=57.11 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=19.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
..+++.+|+|+|||.++-..+...
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 579999999999998876555444
No 442
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.09 E-value=0.051 Score=55.93 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
+..|.|.|++|+||||+++.|+..+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999987
No 443
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=93.08 E-value=0.12 Score=53.23 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCcHHHHHH
Q 001066 721 RGVLLHGHPGTGKTLVVR 738 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAr 738 (1167)
.++++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 579999999999997554
No 444
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.05 E-value=0.056 Score=56.21 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=22.3
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
++.-|.|.|++|+||||+++.|+..+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34568899999999999999998765
No 445
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.02 E-value=0.062 Score=57.37 Aligned_cols=34 Identities=24% Similarity=0.464 Sum_probs=27.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATIS 1146 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell 1146 (1167)
.|.|.|++|+|||.+|+.||..| | +.++ |.-.++
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~l-g-~~~~--d~d~~~ 51 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDF-G-FTYL--DTGAMY 51 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH-C-CEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-C-Ccee--cCCCee
Confidence 38999999999999999999988 5 5554 554554
No 446
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.93 E-value=0.19 Score=52.30 Aligned_cols=28 Identities=18% Similarity=0.147 Sum_probs=23.7
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhc
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCAR 746 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~ 746 (1167)
.+.-+.|.|++|+||||+++.|+..+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3456889999999999999999988753
No 447
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.90 E-value=0.069 Score=54.53 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=25.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcc--cceEEEEeeh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFI--GNVEIQKVDL 1142 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~--G~L~fisvD~ 1142 (1167)
|.|.|++|+|||.+|+.|+..|. | +.++..+-
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g-~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRG-KKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCC-C-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEeeC
Confidence 79999999999999999999872 2 56666543
No 448
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.88 E-value=0.065 Score=59.21 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=25.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEee
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVD 1141 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD 1141 (1167)
-|.|+|++|+|||.+|+.|+ .+ | +.++..|
T Consensus 77 iI~I~G~~GSGKSTva~~La-~l-g-~~~id~D 106 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK-NL-G-AYIIDSD 106 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HH-T-CEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHH-HC-C-CcEEehh
Confidence 48999999999999999999 57 5 6666554
No 449
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=92.84 E-value=0.14 Score=54.41 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCcHHHHHH
Q 001066 721 RGVLLHGHPGTGKTLVVR 738 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAr 738 (1167)
..+++.+|+|+|||..+-
T Consensus 68 ~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 68 YDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCEEECCCSSHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 579999999999997643
No 450
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=92.82 E-value=0.36 Score=50.23 Aligned_cols=24 Identities=29% Similarity=0.224 Sum_probs=18.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
..+++.+|+|+|||..+-..+...
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHHh
Confidence 569999999999998766554443
No 451
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.81 E-value=0.089 Score=54.97 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=29.0
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG 758 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~ 758 (1167)
.+...+.|.||+|+|||||++.|+..+........++.++.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 34456889999999999999999998763211244555444
No 452
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.79 E-value=0.053 Score=57.47 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSF 1131 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l 1131 (1167)
|+|.||||+|||.+|+.||..|
T Consensus 3 I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999864
No 453
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.79 E-value=0.061 Score=56.16 Aligned_cols=25 Identities=28% Similarity=0.627 Sum_probs=21.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
+.|+|.||+|+|||||++.|.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4699999999999999999987653
No 454
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.77 E-value=0.054 Score=55.38 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
.++|.||+|+||||+++.|+...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 47899999999999999998744
No 455
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.76 E-value=0.059 Score=55.89 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSF 1131 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l 1131 (1167)
-|.|.|+||+|||.+|+.|+..|
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999999976
No 456
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.75 E-value=0.04 Score=64.42 Aligned_cols=30 Identities=30% Similarity=0.351 Sum_probs=25.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEee
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVD 1141 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD 1141 (1167)
|+|+|+||+|||.+|++|+..+ | ..+++.|
T Consensus 261 Iil~G~pGSGKSTla~~L~~~~-~-~~~i~~D 290 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLVSA-G-YVHVNRD 290 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTGGG-T-CEECCGG
T ss_pred EEEECCCCCCHHHHHHHHHHhc-C-cEEEccc
Confidence 8899999999999999999987 4 5555544
No 457
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.72 E-value=0.07 Score=55.80 Aligned_cols=30 Identities=23% Similarity=0.236 Sum_probs=25.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR 756 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l 756 (1167)
.|.|+|++||||||+++.++..++ ++++..
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg-----~~vid~ 43 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYG-----AHVVNV 43 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-----CEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC-----CEEEEC
Confidence 478999999999999999999876 566553
No 458
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.70 E-value=0.052 Score=56.33 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 722 GVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 722 ~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
.|.|.||+|+||||+++.|+. ++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg 26 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LG 26 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TT
T ss_pred EEEEECCCCCCHHHHHHHHHH-CC
Confidence 478999999999999999987 54
No 459
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.65 E-value=0.067 Score=56.00 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=24.2
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
..+..|+|.|++|+||||+++.|+..+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3445688999999999999999999875
No 460
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.64 E-value=0.063 Score=55.36 Aligned_cols=22 Identities=27% Similarity=0.708 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSF 1131 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l 1131 (1167)
+.|+||+|+|||.|+++|+..+
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999764
No 461
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.59 E-value=0.063 Score=54.91 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSF 1131 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l 1131 (1167)
+.|+||+|+|||.|+++|+..+
T Consensus 8 i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 8999999999999999999865
No 462
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.58 E-value=0.066 Score=55.81 Aligned_cols=27 Identities=33% Similarity=0.631 Sum_probs=22.3
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
+...+.|.||+|+|||||++.|+..+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 345689999999999999999988753
No 463
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.57 E-value=0.31 Score=55.34 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=30.0
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEecc
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKG 758 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~ 758 (1167)
.....+.|.||||+|||||++.|+..+......+.+...+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~ 93 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP 93 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcC
Confidence 34456889999999999999999987754444455555443
No 464
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=92.55 E-value=0.16 Score=53.59 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCcHHHHHH
Q 001066 720 PRGVLLHGHPGTGKTLVVR 738 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAr 738 (1167)
...+++.+|+|+|||..+-
T Consensus 62 ~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 62 GKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHH
Confidence 3579999999999998644
No 465
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.53 E-value=0.32 Score=54.49 Aligned_cols=36 Identities=28% Similarity=0.319 Sum_probs=28.0
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEE
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYF 754 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~ 754 (1167)
.+..+.|.||+|+||||+++.||..+......+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 345688999999999999999999887544444443
No 466
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=92.43 E-value=0.51 Score=59.67 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=21.7
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHH
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGS 743 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~ 743 (1167)
....++|+||.|+||||+.+.|+..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3456889999999999999999875
No 467
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.43 E-value=0.068 Score=54.86 Aligned_cols=25 Identities=28% Similarity=0.627 Sum_probs=22.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
..+.|.||+|+|||||++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3578999999999999999998764
No 468
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=92.42 E-value=0.28 Score=51.44 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCcHHHHHH
Q 001066 720 PRGVLLHGHPGTGKTLVVR 738 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAr 738 (1167)
...+++.+|+|+|||..+-
T Consensus 57 ~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCChHHHHHH
Confidence 3579999999999997644
No 469
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=92.40 E-value=0.026 Score=51.62 Aligned_cols=54 Identities=9% Similarity=0.132 Sum_probs=44.9
Q ss_pred chhHHHHHHHHHHhhhHHHHHHhhHHHHHhhhhhhhhhhhccccChHHHHHhhHHHHHHHhhccCc
Q 001066 604 GDQYLARIKKLKARKMKMEIRKLSNDAWRKDMEAEEKWLENCGEDEEFLKREGKRLHRDLLRIAPV 669 (1167)
Q Consensus 604 g~q~le~Lk~~tkk~sgAEI~~l~~~A~~~~i~r~~~~l~~~~~d~~~lk~~~~d~~~aL~~v~p~ 669 (1167)
.+.++..++..|.+|+||||+.+|++|+..++.+.. ..++..+|..++.++.|.
T Consensus 31 ~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~------------~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 31 RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR------------VHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp TTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTC------------SEECHHHHHHHHHHHHCC
T ss_pred cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcC------------CCCCHHHHHHHHHHHccC
Confidence 567789999999999999999999999988876541 245678999999988764
No 470
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=92.39 E-value=0.058 Score=49.36 Aligned_cols=56 Identities=16% Similarity=0.149 Sum_probs=45.6
Q ss_pred cchhHHHHHHHHHHhhhHHHHHHhhHHHHHhhhhhhhhhhhccccChHHHHHhhHHHHHHHhhccCcc
Q 001066 603 YGDQYLARIKKLKARKMKMEIRKLSNDAWRKDMEAEEKWLENCGEDEEFLKREGKRLHRDLLRIAPVY 670 (1167)
Q Consensus 603 ~g~q~le~Lk~~tkk~sgAEI~~l~~~A~~~~i~r~~~~l~~~~~d~~~lk~~~~d~~~aL~~v~p~~ 670 (1167)
..+.++..++..|.+|+||+|..+|+.|+..++.+... .++..+|..++.++.+..
T Consensus 20 ~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~------------~i~~~df~~Al~~v~~~~ 75 (88)
T 3vlf_B 20 ERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK------------VATEKDFLKAVDKVISGY 75 (88)
T ss_dssp CSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCS------------SBCHHHHHHHHHHHTC--
T ss_pred CCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccc------------cCCHHHHHHHHHHHhcCc
Confidence 35788999999999999999999999999888866321 356789999999988654
No 471
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.37 E-value=0.088 Score=55.05 Aligned_cols=31 Identities=16% Similarity=0.397 Sum_probs=26.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR 756 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l 756 (1167)
..|.|.|++|+|||++++.|+..++ +.++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g-----~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS-----MIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT-----CEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC-----CceecC
Confidence 4689999999999999999999887 555543
No 472
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.37 E-value=0.1 Score=56.57 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.4
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
...|.|.||+|+||||+++.||..++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34688999999999999999999887
No 473
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.36 E-value=0.074 Score=56.35 Aligned_cols=28 Identities=18% Similarity=0.420 Sum_probs=23.2
Q ss_pred CCCCCcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 717 LTPPRGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 717 l~~~~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
+.+...+.|.||+|+|||||++.|+..+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3455678999999999999999999876
No 474
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.34 E-value=0.063 Score=56.27 Aligned_cols=22 Identities=18% Similarity=0.493 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSF 1131 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l 1131 (1167)
|.|+||+|+|||.|++.|+..+
T Consensus 11 i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHST
T ss_pred EEEECcCCCCHHHHHHHHHhhC
Confidence 8899999999999999999977
No 475
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.32 E-value=0.13 Score=44.87 Aligned_cols=48 Identities=19% Similarity=0.143 Sum_probs=34.2
Q ss_pred CCCCcceecCCCCCCCCCcceeccCCCCccccccCCCCCCCCCCcccccCCCC
Q 001066 443 KQGRRCGLCGCGNDGKPPKRLIQDAGDSENEVYSGSSASEEPNYDIWDGFGDE 495 (1167)
Q Consensus 443 ~~~~~C~lC~~~~~~~~~~~v~cd~c~~~vh~~c~g~~~~~~~~~~~~~~~~~ 495 (1167)
.....|.+|+.+ ..+++||.|+...|+.|........+.+.|.+..+.
T Consensus 10 ~~~~~C~vC~~~-----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~ 57 (66)
T 2lri_C 10 APGARCGVCGDG-----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCS 57 (66)
T ss_dssp CTTCCCTTTSCC-----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTT
T ss_pred CCCCCcCCCCCC-----CeEEECCCCCCceecccCCCccCcCCCCCEECcccc
Confidence 345679999753 459999999999999998655444444556655553
No 476
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.31 E-value=0.086 Score=55.22 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=24.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEe
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFAR 756 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l 756 (1167)
+..|.|.|++|+||||+++.|+. ++ +.++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg-----~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LG-----INVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TT-----CEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cC-----CEEEEc
Confidence 34688999999999999999987 55 455543
No 477
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.27 E-value=0.072 Score=55.96 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=29.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhh
Q 001066 1108 FRVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQ 1147 (1167)
Q Consensus 1108 p~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~ 1147 (1167)
+-|.+.||+|+|||.+|+.||..| | +.|+ | -+++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l-g-~~~~--D-~~~~~ 41 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY-N-IPLY--S-KELLD 41 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT-T-CCEE--C-HHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh-C-cCEE--C-HHHHH
Confidence 348999999999999999999999 5 8887 5 44543
No 478
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.26 E-value=0.082 Score=55.25 Aligned_cols=33 Identities=36% Similarity=0.568 Sum_probs=27.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcc--c-ceEEEEeeh
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFI--G-NVEIQKVDL 1142 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~--G-~L~fisvD~ 1142 (1167)
+.+.||+|+|||.|+++|+..+. | +.-.+.+|+
T Consensus 25 v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 25 VALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp EEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 78999999999999999999872 0 156777765
No 479
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.19 E-value=0.069 Score=58.78 Aligned_cols=24 Identities=33% Similarity=0.554 Sum_probs=21.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
.-|+|.|+||+||||+++.|+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999999853
No 480
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.18 E-value=0.067 Score=55.11 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 001066 1110 VLISGSPGSGQRHLAACLLHSF 1131 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l 1131 (1167)
|.|.||+|+|||.|++.|+..+
T Consensus 9 i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 9 IVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 8999999999999999999976
No 481
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.17 E-value=0.079 Score=53.71 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=24.8
Q ss_pred CCCCCCcEEEEcCCCCcHHHHHHHHHHHh
Q 001066 716 GLTPPRGVLLHGHPGTGKTLVVRALIGSC 744 (1167)
Q Consensus 716 gl~~~~~VLL~GPpGTGKTtLAraLA~~l 744 (1167)
.+.+...+.|.||.|+|||||++.|+..+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34555568899999999999999999987
No 482
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.17 E-value=0.13 Score=47.77 Aligned_cols=48 Identities=21% Similarity=0.378 Sum_probs=34.4
Q ss_pred CCCCCcceecCCCCCCCCCcceeccCCCCccccccCCCCCCCCCCccccc
Q 001066 442 IKQGRRCGLCGCGNDGKPPKRLIQDAGDSENEVYSGSSASEEPNYDIWDG 491 (1167)
Q Consensus 442 ~~~~~~C~lC~~~~~~~~~~~v~cd~c~~~vh~~c~g~~~~~~~~~~~~~ 491 (1167)
......|.+|+...+ .+.+++||.|+..-|+.|.+......+.+.|.+
T Consensus 13 ~~~~~~C~vC~~~~~--~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C 60 (92)
T 2e6r_A 13 FIDSYICQVCSRGDE--DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRC 60 (92)
T ss_dssp CCCCCCCSSSCCSGG--GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCC
T ss_pred ccCCCCCccCCCcCC--CCCEEEcCCCCchhccccCCCCcccCCCCCcCC
Confidence 445668999976643 478999999999999999984433333344553
No 483
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=92.15 E-value=0.29 Score=52.69 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCcHHHHHH
Q 001066 721 RGVLLHGHPGTGKTLVVR 738 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAr 738 (1167)
+.+++.+|+|+|||..+-
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 679999999999997644
No 484
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.13 E-value=0.087 Score=55.52 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=23.1
Q ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 719 PPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 719 ~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
....+.|.||+|+|||||++.|+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456688999999999999999998753
No 485
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.10 E-value=0.11 Score=55.48 Aligned_cols=28 Identities=14% Similarity=0.297 Sum_probs=24.5
Q ss_pred CCCCcEEEEcCCCCcHHHHHHHHHHHhh
Q 001066 718 TPPRGVLLHGHPGTGKTLVVRALIGSCA 745 (1167)
Q Consensus 718 ~~~~~VLL~GPpGTGKTtLAraLA~~l~ 745 (1167)
..+..|.|.|++|+||||+++.||..++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3445689999999999999999999887
No 486
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.06 E-value=0.11 Score=58.50 Aligned_cols=36 Identities=17% Similarity=0.100 Sum_probs=28.4
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccccc
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGADC 761 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~~l 761 (1167)
.-|+|.||+|+|||+|+..||..++ ..+++.+...+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~-----~~iis~Ds~Qv 39 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN-----GEVISGDSMQV 39 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT-----EEEEECCGGGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc-----cceeecCcccc
Confidence 3478899999999999999999876 46666655543
No 487
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.05 E-value=0.21 Score=59.23 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhc
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCAR 746 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~ 746 (1167)
...++|+|++|+|||+|+..++.....
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 346899999999999999999887653
No 488
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=92.04 E-value=0.25 Score=56.15 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHH
Q 001066 720 PRGVLLHGHPGTGKTLVVRAL 740 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraL 740 (1167)
...+++.+|+|+|||+.+-..
T Consensus 77 ~~~~lv~a~TGsGKT~~~~~~ 97 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFAIS 97 (414)
T ss_dssp TCCEEECCCSCSSSHHHHHHH
T ss_pred CCCEEEECCCCCcccHHHHHH
Confidence 356999999999999875433
No 489
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.03 E-value=0.11 Score=59.35 Aligned_cols=34 Identities=12% Similarity=0.087 Sum_probs=28.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEeccc
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARKGA 759 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~~~ 759 (1167)
.-|+|.||+|+|||+||..||..++ ..++..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence 3588999999999999999999886 566666554
No 490
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.99 E-value=0.082 Score=57.04 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.8
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhc
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCAR 746 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~ 746 (1167)
+..|.|.|++|+||||+++.|+..++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 456889999999999999999998773
No 491
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=91.91 E-value=0.47 Score=61.59 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=20.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHH
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIG 742 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~ 742 (1167)
...++|+||.|+||||+++.|+.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iGl 811 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAGL 811 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 46788999999999999999843
No 492
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.89 E-value=0.076 Score=56.04 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 001066 1110 VLISGSPGSGQRHLAACLLHS 1130 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~ 1130 (1167)
++|+||||+|||.||.+||..
T Consensus 27 ~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 27 TEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999999984
No 493
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=91.89 E-value=0.12 Score=55.35 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=25.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEE
Q 001066 721 RGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFA 755 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~ 755 (1167)
..|.|.|++|||||++++.||..++ ++|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg-----~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELG-----IHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT-----CEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcC-----CcEEc
Confidence 4578899999999999999999998 56644
No 494
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=91.88 E-value=0.1 Score=55.95 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=30.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhhHhhhcccchHHHHH
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLATISQEGRGDLVQGLT 1158 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~sell~kyiGesE~nvr 1158 (1167)
-|.+.|++|+|||.+|+.||..| | +.|+.-|+=..+.+-.|-++.-+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~l-g-~~~~d~~~~~~~a~~~g~~~~~~~ 63 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEEL-G-IHFYDDDILKLASEKSAVGEQFFR 63 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH-T-CEEECHHHHHHHHHCC--------
T ss_pred EEEEeCCCCCCHHHHHHHHHHHc-C-CcEEcHHHHHHHHHHcCCCHHHHH
Confidence 48999999999999999999999 5 888654443333344454544443
No 495
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=91.85 E-value=0.17 Score=43.88 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=32.5
Q ss_pred CCCCCcceecCCCCCCCCCcceeccCCCCccccccCCCCCCCCCCccccc
Q 001066 442 IKQGRRCGLCGCGNDGKPPKRLIQDAGDSENEVYSGSSASEEPNYDIWDG 491 (1167)
Q Consensus 442 ~~~~~~C~lC~~~~~~~~~~~v~cd~c~~~vh~~c~g~~~~~~~~~~~~~ 491 (1167)
......|.+|+.+ ..+++||.|+..-|..|.+......+.+.|.+
T Consensus 5 ~~~~~~C~vC~~~-----g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C 49 (66)
T 1xwh_A 5 QKNEDECAVCRDG-----GELICCDGCPRAFHLACLSPPLREIPSGTWRC 49 (66)
T ss_dssp CSCCCSBSSSSCC-----SSCEECSSCCCEECTTTSSSCCSSCCSSCCCC
T ss_pred CCCCCCCccCCCC-----CCEEEcCCCChhhcccccCCCcCcCCCCCeEC
Confidence 4456789999754 46999999999999999995433323344543
No 496
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=91.85 E-value=0.37 Score=54.60 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=17.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHH
Q 001066 721 RGVLLHGHPGTGKTLVVRALIG 742 (1167)
Q Consensus 721 ~~VLL~GPpGTGKTtLAraLA~ 742 (1167)
..+++.+|+|+|||..+-..+.
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~~ 80 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPTL 80 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHHH
Confidence 5699999999999986654443
No 497
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.85 E-value=0.077 Score=55.08 Aligned_cols=32 Identities=19% Similarity=0.041 Sum_probs=23.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcccceEEEEee
Q 001066 1110 VLISGSPGSGQRHLAACLLHSFIGNVEIQKVD 1141 (1167)
Q Consensus 1110 iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD 1141 (1167)
++|+||||+|||.||..||..-.+++-++..+
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 89999999999999999997332234444443
No 498
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.81 E-value=0.17 Score=52.11 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=28.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHhhcCCCceEEEEec
Q 001066 720 PRGVLLHGHPGTGKTLVVRALIGSCARGDKRIAYFARK 757 (1167)
Q Consensus 720 ~~~VLL~GPpGTGKTtLAraLA~~l~~~~~~i~~~~l~ 757 (1167)
..-+.|.|++|+|||||++.|+..+......+..+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~ 43 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeC
Confidence 45688999999999999999998876444444444443
No 499
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.80 E-value=0.2 Score=61.76 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHccccChhhhhccCCCCCCcEEEEcCCCCcHHHHHHHHHHHhhcC
Q 001066 691 LQDVIRCMKEVVILPLLYPEFFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGSCARG 747 (1167)
Q Consensus 691 le~~k~~L~e~l~~pl~~~e~~~~lgl~~~~~VLL~GPpGTGKTtLAraLA~~l~~~ 747 (1167)
...+++.+..++.. ..-.||+||||||||+++-.+...+...
T Consensus 191 N~~Q~~AV~~al~~---------------~~~~lI~GPPGTGKT~ti~~~I~~l~~~ 232 (646)
T 4b3f_X 191 DTSQKEAVLFALSQ---------------KELAIIHGPPGTGKTTTVVEIILQAVKQ 232 (646)
T ss_dssp CHHHHHHHHHHHHC---------------SSEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhcC---------------CCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 45666667666532 1247899999999997665555544433
No 500
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.76 E-value=0.11 Score=57.74 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=27.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcccceEEEEeehhh
Q 001066 1109 RVLISGSPGSGQRHLAACLLHSFIGNVEIQKVDLAT 1144 (1167)
Q Consensus 1109 ~iLf~GPpGtGKT~LAkaLA~~l~G~L~fisvD~se 1144 (1167)
-++++||+|+|||.|++.+++.+. -.++-+++..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~--~~~~~~~~~~ 65 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELN--LPYIYLDLRK 65 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT--CCEEEEEGGG
T ss_pred cEEEECCCCCCHHHHHHHHHHhcC--CCEEEEEchh
Confidence 499999999999999999999873 3455666543
Done!