Citrus Sinensis ID: 001067

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------117

MSQKPRVQPAFQSIKSLPVDFRFIGSPLSDQVEKSDDVNFRHSDVASLSVPENGELGNEFVEEGENEESPYCGNNIVVEDRPSVGDEDLDSAASPLPSVSASHTDRRWSDTTSYAGKKKLQSWFQLPNGNWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLKSVESKGNDSDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSERNSDASVNASDEVEYSWDTGSNCKGQESNGVRPMSAGLSVISRLAEEFDQRSQVFGDDAKFLVEVKSGQVEASLNPDKELRRLKQMFEAWKKDYGSRLRETKVILNKLGSEEGAIDRVKKKWWGRRNSTRIN

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEEEEEEccEEEEEcccccEEEEEcccccccccccccccHHHHHcccccHHHHHHHHHHHHcccccccccccEEEEEccccccccccHHHHHHccccccccccHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHccccccHHHHHHHHccHHHHHccccccccccccccccEEEEEcccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccEEEEEEcccccccccccHHHHHHHHHHcccHHHHHHHHcccEEEEcccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccEEcccccHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHccccccccccccccEEEEEccEEEEccccccccccccccHHHHHHHHHccccHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccEEEEcccccccccccccHHHHHHHHHccccHHHHHHccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc

ccccccccccccccccccccEEEccccccccccccccEEEcccccEcccccccccccccEcccccccccccccccEcccccccccHHHHHHHccccHHHccccHHHHHccccccccEcccEEEEEcccccEEEEEEEEEcccEEEEEEccccEEEEEccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHccEEEccccEEEEEccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHHHccccHHHHHHHHcHHHHHHccccEccccccccccEEEEEEEccccEEEcccEEHHHHHHccEEEEccccccHHHHHHHHccccHHHHHHHcccccccccEEccccEEEEcccccHHHHHHHHHHHHHEcccHHHHHHHHHHHHHHHHHccEEEEEccccccccccccHHHHHHHHHHcccHHHHHHHHcccEEEEcccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccEEcccccHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHccccEEEEEEcccHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccEEEEEEccEEEEEccHHHHcccccccHHHHHHHHHcccHHHHHHcccccHHccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEcccccccccccccHHHHHHHccccEEEEEEEEcccccccHHHHHHHHHHcHccHHHcccccHHHHHHHHHHHccccccccEEcccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcccccccccccccccccccccccccc

msqkprvqpafqsikslpvdfrfigsplsdqveksddvnfrhsdvaslsvpengelgnefveegeneespycgnnivvedrpsvgdedldsaasplpsvsashtdrrwsdttsyagKKKLQSwfqlpngnwelGKILSisgtesvislpegkvlkvksenlvsanpdildgvddlmqlsylnepsvlYNLHYrykqdmiytkagpvlvainpfkkvplygnYYIEAyksksiesphvyaiTDTAIREMIRDEVNQSIIisgesgagktETAKIAMQYLAALgggsgieyeilktnpileafgnaktsrndnssrFGKLIEIHFsetgkisgaNIQTFLLEKSRVVQCAEGERAYHIFYQLcvgappalREKLNLMSAKEYKYLRQSScysingvddaeQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFtvidnenhvepvadegLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVgkrrtgrsisildiygfesfdrnSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDwakvdfednkdclnlfekkplgllslldeestfpngtdlTFANKLKqhlnsnpcfrgerdksftvshyageviydttgfleknrdllhldsiellsscschlpqifasnmlsqsnkpvvgplykaggadsqkLSVATKFKGQLFQLMQRLesttphfircikpnnfqspglyeQGLVLQQLRCCGVLEVVRIsrsgfptrmshQKFARRYGFLLLEsvasqdplSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRrcsgdicllksveskgndsdevLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKslaiddsernsdasvnasdeveyswdtgsnckgqesngvrpmsaGLSVISRLAEEFdqrsqvfgddaKFLVEVKSgqveaslnpDKELRRLKQMFEAWKKDYGSRLRETKVILNKlgseegaidrvkkkwwgrrnstrin

msqkprvqpafqsikslpvdfRFIGSPLSDQVEKSDDVNFRHSdvaslsvpengeLGNEFVEEGENEESPYCGNNIVVEDRPSVGDEDLDSAasplpsvsashtdrrwSDTTSYAGKKKLQSWFQLPNGNWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAyksksiespHVYAITDTAIREMIRDEVNQSIIISgesgagktETAKIAMQYLAALGGGSGIEYEILKTNPILEAfgnaktsrndnsSRFGKLIEIHfsetgkisgANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIvqnltlsqatDTRDALAKSIYACLFEWLVEQINKSlavgkrrtgrsiSILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRIsrsgfptrmshQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVAlqsfirgekiRKEYALVLQRHRAAVVIQRQIKSRvarqklknikyssimIQSVIRGWLVRRCSGDICLLKsveskgndsdevLVKASFLAELQRRVLKAEAAlrekeeendilhqrLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKslaiddsernsdasvnasdeveyswdtgsnckgqesngvrpMSAGLSVISRLAEEFDQRSQVFGDDAKFLVEVksgqveaslnpdkelRRLKQMFEAWkkdygsrlrETKVilnklgseegaidrvkkkwwgrrnstrin

MSQKPRVQPAFQSIKSLPVDFRFIGSPLSDQVEKSDDVNFRHSDVASLSVPengelgnefveegeneeSPYCGNNIVVEDRPSVGDEDLDsaasplpsvsasHTDRRWSDTTSYAGKKKLQSWFQLPNGNWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLKSVESKGNDSDEVLVKASFLAELQRRVlkaeaalrekeeeNDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSERNSDASVNASDEVEYSWDTGSNCKGQESNGVRPMSAGLSVISRLAEEFDQRSQVFGDDAKFLVEVKSGQVEASLNPDKELRRLKQMFEAWKKDYGSRLRETKVILNKLGSEEGAIDRVKKKWWGRRNSTRIN

*****************PVDFRFI*******************************************************************************************GKKKLQSWFQLPNGNWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGN**********RFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQ**KPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLKSVE*******EVLVKASFLAELQRRVL**********************************************************************************************************************VFGDDAKFLVEV*****************LKQMFEAWKKDYGSRLRETKVILNKLGSEEGAIDRVKKKWWG********

*****************************************************************************************************************YAGKKKLQSWFQLPNGNWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSF****************LITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVG*RRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFA*******************************FKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESV*****LSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLKSVESKGNDSDEVLVKASFLAELQR********************************************************************************************************************************************************************************************************

**********FQSIKSLPVDFRFIGSPLSDQVEKSDDVNFRHSDVASLSVPENGELGNEFVEEGENEESPYCGNNIVVEDRPSV****************************SYAGKKKLQSWFQLPNGNWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLKSVESKGNDSDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQK******************LSIAKKSLAI*******************SWDTGSNCKGQESNGVRPMSAGLSVISRLAEEFDQRSQVFGDDAKFLVEVKSGQVEASLNPDKELRRLKQMFEAWKKDYGSRLRETKVILNKLGSEEGAIDRVKKKWWGRRNSTRIN

********PAFQSIKSLPVDFRFIGSPLSDQVEKSDDVNFRHSDV**************************************VGDED*DSAASPLPSVSASHTDRRWSDTTSYAGKKKLQSWFQLPNGNWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNM**********************LSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLKSVESKGNDSDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLS***********************************************AGLSVISRLAEEFDQRSQVFGDDAKFLVEVKSGQVEASLNPDKELRRLKQMFEAWKKDYGSRLRETKVILNKLG***********************

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MSQKPRVQPAFQSIKSLPVDFRFIGSPLSDQVEKSDDVNFRHSDVASLSVPENGELGNEFVEEGENEESPYCGNNIVVEDRPSVGDEDLDSAASPLPSVSASHTDRRWSDTTSYAGKKKLQSWFQLPNGNWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLKSVESKGNDSDEVLVKASFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxWQKQMRSLQSSLSIAKKSLAIDDSERNSDASVNASDEVEYSWDTGSNCKGQESNGVRPMSAGLSVISRLAEEFDQRSQVFGDDAKFLVEVKSGQVEASLNPDKELRRLKQMFEAWKKDYGSRLRETKVILNKLGSEEGAIDRVKKKWWGRRNSTRIN

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1167	2.2.26 [Sep-21-2011]
Q9Y4I1		1855	Unconventional myosin-Va	yes	no	0.692	0.435	0.426	0.0
Q9QYF3		1828	Unconventional myosin-Va	yes	no	0.689	0.440	0.427	0.0
Q02440		1829	Unconventional myosin-Va	yes	no	0.692	0.441	0.418	0.0
P54697		2245	Myosin-J heavy chain OS=D	yes	no	0.744	0.387	0.377	0.0
Q99104		1853	Unconventional myosin-Va	yes	no	0.689	0.434	0.425	0.0
P08799		2116	Myosin-2 heavy chain OS=D	no	no	0.622	0.343	0.442	0.0
P21271		1818	Unconventional myosin-Vb	no	no	0.655	0.420	0.429	1e-174
Q9NQX4		1742	Unconventional myosin-Vc	no	no	0.652	0.437	0.427	1e-173
Q9ULV0		1848	Unconventional myosin-Vb	no	no	0.658	0.415	0.416	1e-173
P70569		1846	Unconventional myosin-Vb	no	no	0.651	0.411	0.430	1e-173

>sp\|Q9Y4I1\|MYO5A_HUMAN Unconventional myosin-Va OS=Homo sapiens GN=MYO5A PE=1 SV=2	Back alignment and function desciption

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/844 (42%), Positives = 513/844 (60%), Gaps = 36/844 (4%)

Query: 123 WFQLPNGNW---ELGKILSISGTESVISLPEGKVLKV----KSENLVSA-NPDILDGVDD 174
           W   P   W   EL K         ++ L EGK L+     K++ L    NPDIL G +D
Sbjct: 14  WIPDPEEVWKSAELLKDYKPGDKVLLLHLEEGKDLEYHLDPKTKELPHLRNPDILVGEND 73

Query: 175 LMQLSYLNEPSVLYNLHYRY-KQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSI- 232
           L  LSYL+EP+VL+NL  R+    +IYT  G VLVAINP++++P+YG   I AY  +++ 
Sbjct: 74  LTALSYLHEPAVLHNLRVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMG 133

Query: 233 -ESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS---GIE 288
              PH++A+ + A ++M RDE NQSII+SGESGAGKT +AK AM+Y A + G +    +E
Sbjct: 134 DMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEANVE 193

Query: 289 YEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCA 348
            ++L +NPI+E+ GNAKT+RNDNSSRFGK IEI F +  +I GAN++T+LLEKSRVV  A
Sbjct: 194 EKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQA 253

Query: 349 EGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALD 408
           E ER YHIFYQLC  A     + L L +A  + Y +Q     I GVDDA++     +A  
Sbjct: 254 EEERNYHIFYQLCASAKLPEFKMLRLGNADNFNYTKQGGSPVIEGVDDAKEMAHTRQACT 313

Query: 409 IVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKL 468
           ++ +S+  Q  +F +LA +L LGNV FT  D ++   P   E L    +L+G D  E+  
Sbjct: 314 LLGISESHQMGIFRILAGILHLGNVGFTSRDADSCTIPPKHEPLCIFCELMGVDYEEMCH 373

Query: 469 ALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRS 528
            L  RK+    +T ++ ++  QAT+ RDALAK IYA LF W+V+ +N++L    ++    
Sbjct: 374 WLCHRKLATATETYIKPISKLQATNARDALAKHIYAKLFNWIVDNVNQALHSAVKQHS-F 432

Query: 529 ISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDN 588
           I +LDIYGFE+F+ NSFEQFCINYANE+LQQ FN H+FKLEQEEY+++ I W  +DF DN
Sbjct: 433 IGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDN 492

Query: 589 KDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKL-KQHLNSNPCFRGER--DKSFTVS 645
           + C+NL E K LG+L LLDEE   P GTD T+A KL   HLN    F   R  +K+F + 
Sbjct: 493 QPCINLIESK-LGILDLLDEECKMPKGTDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIQ 551

Query: 646 HYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCH-LPQIF--------ASNMLSQSNKP 696
           H+A +V Y   GFLEKN+D +  + I++L S     LP++F         ++  S    P
Sbjct: 552 HFADKVEYQCEGFLEKNKDTVFEEQIKVLKSSKFKMLPELFQDDEKAISPTSATSSGRTP 611

Query: 697 VV-GPLYKAGG-----ADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGL 750
           +   P     G     A   K +V  +F+  L  LM+ L +TTPH++RCIKPN+F+ P  
Sbjct: 612 LTRTPAKPTKGRPGQMAKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFT 671

Query: 751 YEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAIL 810
           +++   +QQLR CGVLE +RIS +GFP+R ++Q+F  RY  L+ +     D       +L
Sbjct: 672 FDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDRKQTCKNVL 731

Query: 811 HQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLH-GILRVQSCFRGHQARLCLKELRR 869
            +  +  + YQ G TK+FFRAGQ+  LE  R   L    +R+Q   RG   R     +R+
Sbjct: 732 EKLILDKDKYQFGKTKIFFRAGQVAYLEKLRADKLRAACIRIQKTIRGWLLRKKYLRMRK 791

Query: 870 GIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRG 929
             + +Q ++RG + R  YA  L+R +AA +IQ+  +  V R++ K  + ++I++QS +RG
Sbjct: 792 AAITMQRYVRGYQARC-YAKFLRRTKAATIIQKYWRMYVVRRRYKIRRAATIVLQSYLRG 850

Query: 930 WLVR 933
           +L R
Sbjct: 851 FLAR 854

Processive actin-based motor that can move in large steps approximating the 36-nm pseudo-repeat of the actin filament. Involved in melanosome transport. May also be required for some polarization process involved in dendrite formation.
Homo sapiens (taxid: 9606)

>sp\|Q9QYF3\|MYO5A_RAT Unconventional myosin-Va OS=Rattus norvegicus GN=Myo5a PE=1 SV=1	Back alignment and function description

>sp\|Q02440\|MYO5A_CHICK Unconventional myosin-Va OS=Gallus gallus GN=MYO5A PE=1 SV=1	Back alignment and function description

>sp\|P54697\|MYOJ_DICDI Myosin-J heavy chain OS=Dictyostelium discoideum GN=myoJ PE=4 SV=2	Back alignment and function description

>sp\|Q99104\|MYO5A_MOUSE Unconventional myosin-Va OS=Mus musculus GN=Myo5a PE=1 SV=2	Back alignment and function description

>sp\|P08799\|MYS2_DICDI Myosin-2 heavy chain OS=Dictyostelium discoideum GN=mhcA PE=1 SV=3	Back alignment and function description

>sp\|P21271\|MYO5B_MOUSE Unconventional myosin-Vb OS=Mus musculus GN=Myo5b PE=2 SV=2	Back alignment and function description

>sp\|Q9NQX4\|MYO5C_HUMAN Unconventional myosin-Vc OS=Homo sapiens GN=MYO5C PE=1 SV=2	Back alignment and function description

>sp\|Q9ULV0\|MYO5B_HUMAN Unconventional myosin-Vb OS=Homo sapiens GN=MYO5B PE=1 SV=3	Back alignment and function description

>sp\|P70569\|MYO5B_RAT Unconventional myosin-Vb OS=Rattus norvegicus GN=Myo5b PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1167
224083870		1173	predicted protein [Populus trichocarpa]	0.995	0.990	0.858	0.0
224096506		1174	predicted protein [Populus trichocarpa]	0.998	0.992	0.850	0.0
225463689		1197	PREDICTED: myosin-J heavy chain-like [Vi	1.0	0.974	0.840	0.0
255565536		1181	myosin vIII, putative [Ricinus communis]	0.986	0.974	0.837	0.0
297742765		1135	unnamed protein product [Vitis vinifera]	0.969	0.996	0.830	0.0
356576949		1176	PREDICTED: myosin-J heavy chain-like [Gl	0.999	0.991	0.813	0.0
356530262		1177	PREDICTED: myosin-J heavy chain-like [Gl	1.0	0.991	0.813	0.0
449458801		1175	PREDICTED: myosin-J heavy chain-like [Cu	0.997	0.990	0.806	0.0
357444921		1159	Myosin-like protein [Medicago truncatula	0.985	0.992	0.801	0.0
356536431		1106	PREDICTED: myosin-J heavy chain-like [Gl	0.943	0.995	0.840	0.0

>gi\|224083870\|ref\|XP_002307152.1\| predicted protein [Populus trichocarpa] gi\|222856601\|gb\|EEE94148.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 2086 bits (5405), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1007/1173 (85%), Positives = 1082/1173 (92%), Gaps = 11/1173 (0%)

Query: 1    MSQKPRVQPAFQSIKSLPVDFRFIGSPLSDQVEKSDDVNFRHSDVASLSVPENGELGNEF 60
            + +K +V P+FQSIKSLPVDFRF+GSP S+Q E ++ VN   S+ A LSVPE  +L N  
Sbjct: 2    LQKKSQVLPSFQSIKSLPVDFRFVGSPTSEQSENANLVN---SNTACLSVPEKNDLENGL 58

Query: 61   VEEGE-------NEESPYCGNNIVVEDRPSVGDEDLDSAASPLPSVSASHTDRRWSDTTS 113
            VE  E       NE+SPY    I+VE RPSVGDEDLD+  +PLP VS  H +RRW+DT+S
Sbjct: 59   VEGAEDSVGNDVNEDSPYSQAAILVEQRPSVGDEDLDTVPTPLPLVSTFHRERRWADTSS 118

Query: 114  YAGKKKLQSWFQLPNGNWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVD 173
            YA KKKLQSWFQL NG+WELGKILS SGTESVIS P+GKVLKVK+E+LV ANPDILDGVD
Sbjct: 119  YAAKKKLQSWFQLSNGDWELGKILSTSGTESVISPPDGKVLKVKTESLVPANPDILDGVD 178

Query: 174  DLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE 233
            DLMQLSYLNEPSVLYNL YRY +DMIYTKAGPVLVAINPFK+VPLYGN YIEAYK+KS+E
Sbjct: 179  DLMQLSYLNEPSVLYNLQYRYNRDMIYTKAGPVLVAINPFKEVPLYGNNYIEAYKNKSME 238

Query: 234  SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILK 293
            SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILK
Sbjct: 239  SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILK 298

Query: 294  TNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERA 353
            TNPILEAFGNAKT RNDNSSRFGKLIEIHFSETGKISGA IQTFLLEKSRVVQC EGER+
Sbjct: 299  TNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGAKIQTFLLEKSRVVQCMEGERS 358

Query: 354  YHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVS 413
            YHIFYQLC GA P LREK++L  A EYKYLRQS+CY+I GVDDAE+FR V+EALDIVHVS
Sbjct: 359  YHIFYQLCAGASPKLREKISLKIASEYKYLRQSNCYTITGVDDAERFRGVMEALDIVHVS 418

Query: 414  KEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTR 473
            KEDQESVFAMLAAVLWLGNVSF+++DNENHVEP+ADEGL TVAKLIGC++GELKLALSTR
Sbjct: 419  KEDQESVFAMLAAVLWLGNVSFSIVDNENHVEPLADEGLTTVAKLIGCNVGELKLALSTR 478

Query: 474  KMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILD 533
            KMRVGNDTIVQ L+LSQA DTRDALAKSIY+CLF+WLVEQ+NKSLAVGKRRTGRSISILD
Sbjct: 479  KMRVGNDTIVQKLSLSQAIDTRDALAKSIYSCLFDWLVEQVNKSLAVGKRRTGRSISILD 538

Query: 534  IYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLN 593
            IYGFESF+RNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDW KVDF+DN+DCLN
Sbjct: 539  IYGFESFERNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWTKVDFDDNQDCLN 598

Query: 594  LFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIY 653
            LFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSN CFRGER K+F+VSHYAGEV Y
Sbjct: 599  LFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNSCFRGERGKAFSVSHYAGEVTY 658

Query: 654  DTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLS 713
            DTTGFLEKNRDLLHLDSI+LLSSCSCHLPQIFASNML+QS KPVVGPLYKAGGADSQKLS
Sbjct: 659  DTTGFLEKNRDLLHLDSIQLLSSCSCHLPQIFASNMLTQSEKPVVGPLYKAGGADSQKLS 718

Query: 714  VATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISR 773
            VATKFKGQLFQLMQRLE+TTPHFIRCIKPNN QSPG YEQGLVLQQLRCCGVLEVVRISR
Sbjct: 719  VATKFKGQLFQLMQRLENTTPHFIRCIKPNNSQSPGSYEQGLVLQQLRCCGVLEVVRISR 778

Query: 774  SGFPTRMSHQKFARRYGFLLLESVA-SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAG 832
            SGFPTRMSHQKFARRYGFLLLESVA SQDPLS+SVAILHQF+ILPEMYQVGYTKLFFR G
Sbjct: 779  SGFPTRMSHQKFARRYGFLLLESVAYSQDPLSISVAILHQFDILPEMYQVGYTKLFFRTG 838

Query: 833  QIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQ 892
            QIG+LEDTRN TLHGILRVQSCFRGHQAR  L+EL+RGI  LQSF+RGEKIRKEYA+  Q
Sbjct: 839  QIGVLEDTRNHTLHGILRVQSCFRGHQARAYLRELKRGICVLQSFVRGEKIRKEYAVSQQ 898

Query: 893  RHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLKSVESKGNDS 952
            RHRAAVVIQR IKS +  +K K++  +SIMIQSVIRGWLVRR SGD+ LLKS  +KGN+S
Sbjct: 899  RHRAAVVIQRHIKSTICGKKYKDMHQASIMIQSVIRGWLVRRFSGDVGLLKSGATKGNES 958

Query: 953  DEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQ 1012
            DEVLVKASFLAELQRRVLKAEAALREKEEEND+LHQRLQQYE+RWSEYE KMKSMEEVWQ
Sbjct: 959  DEVLVKASFLAELQRRVLKAEAALREKEEENDVLHQRLQQYENRWSEYELKMKSMEEVWQ 1018

Query: 1013 KQMRSLQSSLSIAKKSLAIDDSERNSDASVNASDEVEYSWDTGSNCKGQESNGVRPMSAG 1072
            KQMRSLQSSLSIAKKSLAIDDSERNSDASVNASDE E+SWDTGSN +GQESN  RPMSAG
Sbjct: 1019 KQMRSLQSSLSIAKKSLAIDDSERNSDASVNASDEREFSWDTGSNHRGQESNSARPMSAG 1078

Query: 1073 LSVISRLAEEFDQRSQVFGDDAKFLVEVKSGQVEASLNPDKELRRLKQMFEAWKKDYGSR 1132
            LSVISR+AEEF+QRSQVFGDDAKFLVEVKSGQVEASLNPD+ELRRLKQMFEAWKKDYGSR
Sbjct: 1079 LSVISRMAEEFEQRSQVFGDDAKFLVEVKSGQVEASLNPDRELRRLKQMFEAWKKDYGSR 1138

Query: 1133 LRETKVILNKLGSEEGAIDRVKKKWWGRRNSTR 1165
            LRETKVILNKLG+EEGA+DRVK+KWWGRRNSTR
Sbjct: 1139 LRETKVILNKLGTEEGALDRVKRKWWGRRNSTR 1171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224096506\|ref\|XP_002310637.1\| predicted protein [Populus trichocarpa] gi\|222853540\|gb\|EEE91087.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225463689\|ref\|XP_002273898.1\| PREDICTED: myosin-J heavy chain-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255565536\|ref\|XP_002523758.1\| myosin vIII, putative [Ricinus communis] gi\|223536970\|gb\|EEF38607.1\| myosin vIII, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|297742765\|emb\|CBI35399.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356576949\|ref\|XP_003556592.1\| PREDICTED: myosin-J heavy chain-like [Glycine max]	Back alignment and taxonomy information

>gi\|356530262\|ref\|XP_003533701.1\| PREDICTED: myosin-J heavy chain-like [Glycine max]	Back alignment and taxonomy information

>gi\|449458801\|ref\|XP_004147135.1\| PREDICTED: myosin-J heavy chain-like [Cucumis sativus] gi\|449503518\|ref\|XP_004162042.1\| PREDICTED: myosin-J heavy chain-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357444921\|ref\|XP_003592738.1\| Myosin-like protein [Medicago truncatula] gi\|355481786\|gb\|AES62989.1\| Myosin-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356536431\|ref\|XP_003536741.1\| PREDICTED: myosin-J heavy chain-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1167
TAIR\|locus:2011922		1153	VIIIA [Arabidopsis thaliana (t	0.982	0.994	0.759	0.0
TAIR\|locus:2162550		1220	ATM2 "myosin 2" [Arabidopsis t	0.894	0.855	0.552	1.2e-303
TAIR\|locus:2125929		1522	XI-I [Arabidopsis thaliana (ta	0.675	0.517	0.424	4.3e-174
TAIR\|locus:2025535		1538	XIC [Arabidopsis thaliana (tax	0.678	0.514	0.429	7.5e-174
TAIR\|locus:2149932		1545	XIK [Arabidopsis thaliana (tax	0.679	0.513	0.423	1.4e-172
UNIPROTKB\|Q02440		1829	MYO5A "Unconventional myosin-V	0.484	0.308	0.450	1.8e-172
UNIPROTKB\|F8WE88		1852	MYO5A "Unconventional myosin-V	0.687	0.433	0.42	2.8e-172
UNIPROTKB\|Q9Y4I1		1855	MYO5A "Unconventional myosin-V	0.687	0.432	0.42	2.8e-172
UNIPROTKB\|F1RZC1		1743	MYO5C "Uncharacterized protein	0.688	0.460	0.422	2.9e-172
UNIPROTKB\|Q9NQX4		1742	MYO5C "Unconventional myosin-V	0.688	0.460	0.420	1.1e-170

TAIR\|locus:2011922 VIIIA [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 4460 (1575.1 bits), Expect = 0., P = 0.
 Identities = 882/1162 (75%), Positives = 971/1162 (83%)

Query:     6 RVQPAFQSIKSLPVDFRFIGSPLSDQVEKSDDVNFRHSDVASLSVPXXXXXXXXXXXXXX 65
             +V+ +FQS+K++P D+RF+GSP+SD +E     N        L                 
Sbjct:     4 KVKASFQSLKTMPADYRFLGSPISDHLE----TNLITPPNGHLKNGVNGTASSVGGMDSV 59

Query:    66 XXXSPYCGNNIVVEDRPSVGDEDLDXXXXXXXXXXXXHTDRRWSDTTSYAGKKKLQSWFQ 125
                SPY   +I+  +R S+GD D                DR+WSDT  YA KK LQ W Q
Sbjct:    60 NEDSPYSVRSILNGERSSIGDGD-------SILPLPESNDRKWSDTNVYARKKVLQFWVQ 112

Query:   126 LPNGNWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPS 185
             LPNGNWELGKI+S SG ESVI + EGKVLKVKSE LV ANPDILDGVDDLMQLSYLNEP+
Sbjct:   113 LPNGNWELGKIMSTSGEESVIVVTEGKVLKVKSETLVPANPDILDGVDDLMQLSYLNEPA 172

Query:   186 VLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAI 245
             VLYNL YRY QDMIYTKAGPVLVA+NPFK+VPLYGN  IEAY+ +S ESPHVYAI DTAI
Sbjct:   173 VLYNLEYRYNQDMIYTKAGPVLVAVNPFKEVPLYGNRNIEAYRKRSNESPHVYAIADTAI 232

Query:   246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAK 305
             REMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAK
Sbjct:   233 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAK 292

Query:   306 TSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAP 365
             T RNDNSSRFGKLIEIHFSETGKISGA IQTFLLEKSRVVQC EGER+YHIFYQLC GA 
Sbjct:   293 TLRNDNSSRFGKLIEIHFSETGKISGAQIQTFLLEKSRVVQCTEGERSYHIFYQLCAGAS 352

Query:   366 PALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLA 425
             P LREKLNL SAK+Y YL+QS+CYSINGVDDAE+F  V EALDIVHVSKEDQE+VFAMLA
Sbjct:   353 PTLREKLNLTSAKQYNYLKQSNCYSINGVDDAERFHAVKEALDIVHVSKEDQENVFAMLA 412

Query:   426 AVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQN 485
             AVLWLGNVSFT+IDNENHVEP  DE L TVAKLIGC+I ELKLALS R MRV NDTIVQ 
Sbjct:   413 AVLWLGNVSFTIIDNENHVEPEPDESLSTVAKLIGCNINELKLALSKRNMRVNNDTIVQK 472

Query:   486 LTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSF 545
             LTLSQA D RDALAKSIYACLF+WLVEQINKSLAVGKRRTGRSISILDIYGFESF++NSF
Sbjct:   473 LTLSQAIDARDALAKSIYACLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFNKNSF 532

Query:   546 EQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKKPLGLLSL 605
             EQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDW +VDFEDN++CL+LFEKKPLGLLSL
Sbjct:   533 EQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWTRVDFEDNQECLSLFEKKPLGLLSL 592

Query:   606 LDEESTFPNGTDLTFANKLKQHLNSNPCFRGERDKSFTVSHYAGEVIYDTTGFLEKNRDL 665
             LDEESTFPNGTDLT ANKLKQHLN N CFRG+R K+FTV+HYAGEV Y+TTGFLEKNRDL
Sbjct:   593 LDEESTFPNGTDLTLANKLKQHLNDNSCFRGDRGKAFTVAHYAGEVTYETTGFLEKNRDL 652

Query:   666 LHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQL 725
             LH DSI+LLSSCSCHLPQ FAS+ML  S KP+VGPL+KAGGADSQ+LSVATKFKGQLFQL
Sbjct:   653 LHSDSIQLLSSCSCHLPQAFASSMLIYSEKPLVGPLHKAGGADSQRLSVATKFKGQLFQL 712

Query:   726 MQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKF 785
             MQRL +TTPHFIRCIKPNN QS GLYEQGLVLQQLRCCGVLEVVRISRSGFPTRM H KF
Sbjct:   713 MQRLGNTTPHFIRCIKPNNVQSAGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMFHHKF 772

Query:   786 ARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTL 845
             ARRYGFLLLE++A++DPLSVSVAILHQFNILPEMYQVGYTKLFFR GQIG+LEDTRNRTL
Sbjct:   773 ARRYGFLLLENIAAKDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTL 832

Query:   846 HGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIK 905
             HGILR+QS FRGHQAR  LKEL+ GI  LQSF+RGEK+RKEY  +LQRHRA+  IQ  +K
Sbjct:   833 HGILRLQSYFRGHQARCRLKELKTGITILQSFVRGEKMRKEYTELLQRHRASAAIQSHVK 892

Query:   906 SRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLKSVESKGNDSDEVLVKASFLAEL 965
              R+A Q+ K    +S +IQS IRG LVRRC+GDI  L S  +K N+SDEVLVKAS+L++L
Sbjct:   893 RRIASQQYKATVDASAVIQSAIRGELVRRCAGDIGWLSSGGTKRNESDEVLVKASYLSDL 952

Query:   966 QRRVXXXXXXXXXXXXXNDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIA 1025
             QRRV             NDIL QR+QQY++RWSEYE KMKSMEE+WQKQM+SLQSSLSIA
Sbjct:   953 QRRVLRTEAALREKEEENDILRQRVQQYDNRWSEYETKMKSMEEIWQKQMKSLQSSLSIA 1012

Query:  1026 KKSLAIDDSERNSDASVNASDEVEYSWDTGSNCKGQESNGVRPMSAGLSVISRLAEEFDQ 1085
             KKSL ++DS RNSDASVNASD  +   D+G +         R +  GLSVISRLAEEF Q
Sbjct:  1013 KKSLEVEDSARNSDASVNASDATDL--DSGGSHYQMGHGRSRSVGVGLSVISRLAEEFGQ 1070

Query:  1086 RSQVFGDDAKFLVEVKSGQVEASLNPDKELRRLKQMFEAWKKDYGSRLRETKVILNKLGS 1145
             R+QVFGDD KFL+EVKSGQVEA+LNPD+ELRRLKQMFE WKKDYG RLRETK+IL+KLGS
Sbjct:  1071 RAQVFGDDRKFLMEVKSGQVEANLNPDRELRRLKQMFETWKKDYGGRLRETKLILSKLGS 1130

Query:  1146 EE--GAIDRVKKKWWGRRNSTR 1165
             EE  G+ ++VK  WWGR  STR
Sbjct:  1131 EETGGSAEKVKMNWWGRLRSTR 1152

GO:0003774 "motor activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016459 "myosin complex" evidence=ISS

GO:0030048 "actin filament-based movement" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR\|locus:2162550 ATM2 "myosin 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2125929 XI-I [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2025535 XIC [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2149932 XIK [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q02440 MYO5A "Unconventional myosin-Va" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F8WE88 MYO5A "Unconventional myosin-Va" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Y4I1 MYO5A "Unconventional myosin-Va" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RZC1 MYO5C "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9NQX4 MYO5C "Unconventional myosin-Vc" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1167
cd01383		677	cd01383, MYSc_type_VIII, Myosin motor domain, plan	0.0
smart00242		677	smart00242, MYSc, Myosin	0.0
cd00124		679	cd00124, MYSc, Myosin motor domain	0.0
pfam00063		679	pfam00063, Myosin_head, Myosin head (motor domain)	0.0
cd01384		674	cd01384, MYSc_type_XI, Myosin motor domain, plant-	0.0
COG5022		1463	COG5022, COG5022, Myosin heavy chain [Cytoskeleton	0.0
cd01377		693	cd01377, MYSc_type_II, Myosin motor domain, type I	0.0
cd01380		691	cd01380, MYSc_type_V, Myosin motor domain, type V	0.0
cd01378		674	cd01378, MYSc_type_I, Myosin motor domain, type I	0.0
cd01381		671	cd01381, MYSc_type_VII, Myosin motor domain, type	0.0
cd01387		677	cd01387, MYSc_type_XV, Myosin motor domain, type X	0.0
cd01385		692	cd01385, MYSc_type_IX, Myosin motor domain, type I	0.0
cd01382		717	cd01382, MYSc_type_VI, Myosin motor domain, type V	1e-180
cd01379		653	cd01379, MYSc_type_III, Myosin motor domain, type	1e-162
PTZ00014		821	PTZ00014, PTZ00014, myosin-A; Provisional	1e-158
cd01386		767	cd01386, MYSc_type_XVIII, Myosin motor domain, typ	6e-73
cd01363		186	cd01363, Motor_domain, Myosin and Kinesin motor do	5e-12

>gnl\|CDD\|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata	Back alignment and domain information

 Score = 1355 bits (3509), Expect = 0.0
 Identities = 585/678 (86%), Positives = 624/678 (92%), Gaps = 2/678 (0%)

Query: 164 ANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYY 223
           ANPDILDGVDDLMQLSYLNEPSVLYNL YRY QD+IYTKAGPVLVA+NPFK+VPLYGN Y
Sbjct: 2   ANPDILDGVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVPLYGNDY 61

Query: 224 IEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG 283
           IEAY+ KS +SPHVYAI DTA  EM+RDEVNQSIIISGESGAGKTETAKIAMQYLA+LGG
Sbjct: 62  IEAYRKKSNDSPHVYAIADTAYNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGG 121

Query: 284 GSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSR 343
           GSGIEYEIL+TNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGA IQTFLLEKSR
Sbjct: 122 GSGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGAKIQTFLLEKSR 181

Query: 344 VVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIV 403
           VVQCA GER+YHIFYQLC GAPPAL+EKLNL SA EYKYL+QS CYSINGVDDA++F  +
Sbjct: 182 VVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQRFHTL 241

Query: 404 VEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDI 463
           VEALDIVH+SKEDQE+VFAMLAAVLWLGNVSFTVIDNENHVEPVADE L T AKLIGC+I
Sbjct: 242 VEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVADEALSTAAKLIGCNI 301

Query: 464 GELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKR 523
            +L LALSTRKM V ND IVQ LTL QA D RDALAKSIYA LF+WLVEQINKSL VGKR
Sbjct: 302 EDLMLALSTRKMHVNNDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKR 361

Query: 524 RTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKV 583
           RTGRSISILDIYGFESFD+NSFEQFCINYANERLQQHFNRHLFKLEQEEY +DGIDW KV
Sbjct: 362 RTGRSISILDIYGFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKV 421

Query: 584 DFEDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGERDKSFT 643
           +FEDN++CL+LFEKKPLGLLSLLDEESTFPN TDLTFANKLKQHL +N CFRGER  +FT
Sbjct: 422 EFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKTNSCFRGERGGAFT 481

Query: 644 VSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYK 703
           V HYAGEV YDTTGFLEKNRDLLH DSI+LLSSC C LPQ+FAS+ML QS  PVVGPLY 
Sbjct: 482 VRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQLFASSMLIQS--PVVGPLYV 539

Query: 704 AGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCC 763
           A  ADSQKLSV TKFKGQLF+LMQ+LE+TTPHFIRCIKPNN Q PG+YEQGLVLQQLRCC
Sbjct: 540 ASAADSQKLSVGTKFKGQLFKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCC 599

Query: 764 GVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVG 823
           GVLEVVRISRSG+PTRM+HQ+FARRYGFLLLE++ASQDPLSVSVAIL QFNILPEMYQVG
Sbjct: 600 GVLEVVRISRSGYPTRMTHQEFARRYGFLLLENIASQDPLSVSVAILQQFNILPEMYQVG 659

Query: 824 YTKLFFRAGQIGMLEDTR 841
           YTKLFFR GQIG LEDTR
Sbjct: 660 YTKLFFRTGQIGALEDTR 677

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 677

>gnl\|CDD\|214580 smart00242, MYSc, Myosin	Back alignment and domain information

>gnl\|CDD\|238071 cd00124, MYSc, Myosin motor domain	Back alignment and domain information

>gnl\|CDD\|215687 pfam00063, Myosin_head, Myosin head (motor domain)	Back alignment and domain information

>gnl\|CDD\|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI myosin, involved in organelle transport	Back alignment and domain information

>gnl\|CDD\|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton]	Back alignment and domain information

>gnl\|CDD\|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins	Back alignment and domain information

>gnl\|CDD\|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins	Back alignment and domain information

>gnl\|CDD\|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins	Back alignment and domain information

>gnl\|CDD\|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins	Back alignment and domain information

>gnl\|CDD\|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins	Back alignment and domain information

>gnl\|CDD\|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins	Back alignment and domain information

>gnl\|CDD\|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins	Back alignment and domain information

>gnl\|CDD\|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins	Back alignment and domain information

>gnl\|CDD\|240229 PTZ00014, PTZ00014, myosin-A; Provisional	Back alignment and domain information

>gnl\|CDD\|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins	Back alignment and domain information

>gnl\|CDD\|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1167
COG5022		1463	Myosin heavy chain [Cytoskeleton]	100.0
PTZ00014		821	myosin-A; Provisional	100.0
cd01383		677	MYSc_type_VIII Myosin motor domain, plant-specific	100.0
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	100.0
cd01381		671	MYSc_type_VII Myosin motor domain, type VII myosin	100.0
cd01377		693	MYSc_type_II Myosin motor domain, type II myosins.	100.0
cd01380		691	MYSc_type_V Myosin motor domain, type V myosins. M	100.0
cd01384		674	MYSc_type_XI Myosin motor domain, plant-specific t	100.0
cd01378		674	MYSc_type_I Myosin motor domain, type I myosins. M	100.0
cd01387		677	MYSc_type_XV Myosin motor domain, type XV myosins.	100.0
cd01385		692	MYSc_type_IX Myosin motor domain, type IX myosins.	100.0
cd01382		717	MYSc_type_VI Myosin motor domain, type VI myosins.	100.0
KOG0164		1001	consensus Myosin class I heavy chain [Cytoskeleton	100.0
smart00242		677	MYSc Myosin. Large ATPases. ATPase; molecular moto	100.0
cd01379		653	MYSc_type_III Myosin motor domain, type III myosin	100.0
cd00124		679	MYSc Myosin motor domain. This catalytic (head) do	100.0
cd01386		767	MYSc_type_XVIII Myosin motor domain, type XVIII my	100.0
KOG0160		862	consensus Myosin class V heavy chain [Cytoskeleton	100.0
KOG0163		1259	consensus Myosin class VI heavy chain [Cytoskeleto	100.0
KOG0162		1106	consensus Myosin class I heavy chain [Cytoskeleton	100.0
PF00063		689	Myosin_head: Myosin head (motor domain); InterPro:	100.0
KOG4229		1062	consensus Myosin VII, myosin IXB and related myosi	100.0
cd01363		186	Motor_domain Myosin and Kinesin motor domain. Thes	98.73
PF02736		42	Myosin_N: Myosin N-terminal SH3-like domain; Inter	97.74
KOG0160		862	consensus Myosin class V heavy chain [Cytoskeleton	97.62
KOG0520		975	consensus Uncharacterized conserved protein, conta	97.58
KOG0161		1930	consensus Myosin class II heavy chain [Cytoskeleto	96.93
KOG2128		1401	consensus Ras GTPase-activating protein family - I	96.91
PF00612		21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	96.84
COG5022		1463	Myosin heavy chain [Cytoskeleton]	96.52
PF00612		21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	96.38
KOG0164		1001	consensus Myosin class I heavy chain [Cytoskeleton	96.37
KOG0925		699	consensus mRNA splicing factor ATP-dependent RNA h	96.09
KOG2128		1401	consensus Ras GTPase-activating protein family - I	95.95
PTZ00014		821	myosin-A; Provisional	95.34
PF13207		121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	94.91
smart00015		26	IQ Short calmodulin-binding motif containing conse	94.87
KOG0520		975	consensus Uncharacterized conserved protein, conta	94.75
smart00015		26	IQ Short calmodulin-binding motif containing conse	94.73
PF13401		131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	93.76
PF13191		185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	93.61
PF13238		129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	93.59
TIGR03015		269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	93.49
cd00009		151	AAA The AAA+ (ATPases Associated with a wide varie	93.48
TIGR02322		179	phosphon_PhnN phosphonate metabolism protein/1,5-b	93.25
cd02019		69	NK Nucleoside/nucleotide kinase (NK) is a protein	92.9
KOG0163		1259	consensus Myosin class VI heavy chain [Cytoskeleto	92.48
PF00004		132	AAA: ATPase family associated with various cellula	92.45
PRK05480		209	uridine/cytidine kinase; Provisional	92.34
cd01131		198	PilT Pilus retraction ATPase PilT. PilT is a nucle	92.24
PRK06696		223	uridine kinase; Validated	92.16
PF01583		156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	92.08
PF00485		194	PRK: Phosphoribulokinase / Uridine kinase family;	91.97
cd00820		107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	91.93
smart00382		148	AAA ATPases associated with a variety of cellular	91.92
PRK13833		323	conjugal transfer protein TrbB; Provisional	91.92
cd01918		149	HprK_C HprK/P, the bifunctional histidine-containi	91.88
PRK00300		205	gmk guanylate kinase; Provisional	91.76
cd02023		198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	91.74
cd01129		264	PulE-GspE PulE/GspE The type II secretory pathway	91.67
PRK09270		229	nucleoside triphosphate hydrolase domain-containin	91.66
TIGR00150		133	HI0065_YjeE ATPase, YjeE family. Members of this f	91.65
TIGR00235		207	udk uridine kinase. Model contains a number of lon	91.58
PRK08233		182	hypothetical protein; Provisional	91.53
PRK06762		166	hypothetical protein; Provisional	91.4
COG0444		316	DppD ABC-type dipeptide/oligopeptide/nickel transp	91.39
COG0194		191	Gmk Guanylate kinase [Nucleotide transport and met	91.38
PRK05541		176	adenylylsulfate kinase; Provisional	91.08
PF12846		304	AAA_10: AAA-like domain	91.03
PTZ00301		210	uridine kinase; Provisional	91.03
TIGR02173		171	cyt_kin_arch cytidylate kinase, putative. Proteins	90.99
TIGR03420		226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	90.93
cd02020		147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	90.91
cd02028		179	UMPK_like Uridine monophosphate kinase_like (UMPK_	90.84
PRK07261		171	topology modulation protein; Provisional	90.81
cd02025		220	PanK Pantothenate kinase (PanK) catalyzes the phos	90.71
PRK06547		172	hypothetical protein; Provisional	90.7
PRK00131		175	aroK shikimate kinase; Reviewed	90.63
TIGR02782		299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	90.62
PF13245		76	AAA_19: Part of AAA domain	90.37
PF05729		166	NACHT: NACHT domain	90.37
PF07724		171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	90.35
PRK08118		167	topology modulation protein; Reviewed	90.27
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	90.25
TIGR00554		290	panK_bact pantothenate kinase, bacterial type. Sho	90.24
cd01130		186	VirB11-like_ATPase Type IV secretory pathway compo	90.22
PRK07196		434	fliI flagellum-specific ATP synthase; Validated	90.15
PRK08084		235	DNA replication initiation factor; Provisional	90.07
PF15290		305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	90.02
cd00227		175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	89.89
PRK00889		175	adenylylsulfate kinase; Provisional	89.83
TIGR01420		343	pilT_fam pilus retraction protein PilT. This model	89.81
PRK10078		186	ribose 1,5-bisphosphokinase; Provisional	89.72
PRK14737		186	gmk guanylate kinase; Provisional	89.71
cd00071		137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	89.64
TIGR02928		365	orc1/cdc6 family replication initiation protein. M	89.59
PF03266		168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	89.58
TIGR01313		163	therm_gnt_kin carbohydrate kinase, thermoresistant	89.43
PRK13851		344	type IV secretion system protein VirB11; Provision	89.43
cd02024		187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	89.38
PF03668		284	ATP_bind_2: P-loop ATPase protein family; InterPro	89.36
PRK14738		206	gmk guanylate kinase; Provisional	89.32
PRK03846		198	adenylylsulfate kinase; Provisional	89.27
PRK14961		363	DNA polymerase III subunits gamma and tau; Provisi	89.27
PF00910		107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	89.26
PRK10751		173	molybdopterin-guanine dinucleotide biosynthesis pr	89.07
TIGR02524		358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	89.04
cd02027		149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	89.03
cd01124		187	KaiC KaiC is a circadian clock protein primarily f	88.85
PF00437		270	T2SE: Type II/IV secretion system protein; InterPr	88.83
PF13671		143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	88.72
PF03205		140	MobB: Molybdopterin guanine dinucleotide synthesis	88.7
PRK06217		183	hypothetical protein; Validated	88.7
cd01120		165	RecA-like_NTPases RecA-like NTPases. This family i	88.69
PRK13900		332	type IV secretion system ATPase VirB11; Provisiona	88.64
COG1125		309	OpuBA ABC-type proline/glycine betaine transport s	88.54
TIGR03263		180	guanyl_kin guanylate kinase. Members of this famil	88.52
TIGR02525		372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	88.51
COG0572		218	Udk Uridine kinase [Nucleotide transport and metab	88.3
PRK12377		248	putative replication protein; Provisional	88.25
PRK12608		380	transcription termination factor Rho; Provisional	88.19
COG1102		179	Cmk Cytidylate kinase [Nucleotide transport and me	88.01
PRK00411		394	cdc6 cell division control protein 6; Reviewed	87.87
PF07106		169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	87.74
cd00464		154	SK Shikimate kinase (SK) is the fifth enzyme in th	87.73
TIGR01360		188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	87.7
PRK08903		227	DnaA regulatory inactivator Hda; Validated	87.61
PRK12402		337	replication factor C small subunit 2; Reviewed	87.5
COG1660		286	Predicted P-loop-containing kinase [General functi	87.46
PHA02544		316	44 clamp loader, small subunit; Provisional	87.36
PRK13764		602	ATPase; Provisional	87.36
PRK07003		830	DNA polymerase III subunits gamma and tau; Validat	87.24
cd02021		150	GntK Gluconate kinase (GntK) catalyzes the phospho	87.19
COG0529		197	CysC Adenylylsulfate kinase and related kinases [I	87.15
PRK04040		188	adenylate kinase; Provisional	86.92
PRK14527		191	adenylate kinase; Provisional	86.92
cd02029		277	PRK_like Phosphoribulokinase-like (PRK-like) is a	86.84
PRK04182		180	cytidylate kinase; Provisional	86.79
PRK07667		193	uridine kinase; Provisional	86.67
TIGR02533		486	type_II_gspE general secretory pathway protein E.	86.5
COG0563		178	Adk Adenylate kinase and related kinases [Nucleoti	86.42
PHA00729		226	NTP-binding motif containing protein	86.38
PRK05057		172	aroK shikimate kinase I; Reviewed	86.32
PRK00440		319	rfc replication factor C small subunit; Reviewed	86.26
cd03115		173	SRP The signal recognition particle (SRP) mediates	86.22
PRK14086		617	dnaA chromosomal replication initiation protein; P	86.21
COG4608		268	AppF ABC-type oligopeptide transport system, ATPas	86.2
PRK14087		450	dnaA chromosomal replication initiation protein; P	86.16
PRK14964		491	DNA polymerase III subunits gamma and tau; Provisi	86.08
PF07475		171	Hpr_kinase_C: HPr Serine kinase C-terminal domain;	86.05
PRK09825		176	idnK D-gluconate kinase; Provisional	85.97
PRK08727		233	hypothetical protein; Validated	85.87
PRK11637		428	AmiB activator; Provisional	85.87
TIGR00176		155	mobB molybdopterin-guanine dinucleotide biosynthes	85.82
PRK14956		484	DNA polymerase III subunits gamma and tau; Provisi	85.74
PRK14732		196	coaE dephospho-CoA kinase; Provisional	85.65
TIGR01359		183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	85.54
PRK13894		319	conjugal transfer ATPase TrbB; Provisional	85.53
PRK06893		229	DNA replication initiation factor; Validated	85.44
PRK15453		290	phosphoribulokinase; Provisional	85.42
PRK14974		336	cell division protein FtsY; Provisional	85.32
PF00625		183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	85.3
PRK06645		507	DNA polymerase III subunits gamma and tau; Validat	85.3
TIGR03499		282	FlhF flagellar biosynthetic protein FlhF.	85.24
PF13555		62	AAA_29: P-loop containing region of AAA domain	85.24
PRK06761		282	hypothetical protein; Provisional	85.2
COG2204		464	AtoC Response regulator containing CheY-like recei	85.17
KOG0971		1243	consensus Microtubule-associated protein dynactin	85.13
PRK00698		205	tmk thymidylate kinase; Validated	85.03
PF02367		123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	84.99
COG1124		252	DppF ABC-type dipeptide/oligopeptide/nickel transp	84.92
cd03293		220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	84.84
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	84.64
PRK14531		183	adenylate kinase; Provisional	84.62
PRK05416		288	glmZ(sRNA)-inactivating NTPase; Provisional	84.61
PF07728		139	AAA_5: AAA domain (dynein-related subfamily); Inte	84.61
TIGR01166		190	cbiO cobalt transport protein ATP-binding subunit.	84.55
PRK08356		195	hypothetical protein; Provisional	84.52
TIGR00152		188	dephospho-CoA kinase. This model produces scores i	84.52
PF00308		219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	84.51
TIGR02881		261	spore_V_K stage V sporulation protein K. Members o	84.49
COG0802		149	Predicted ATPase or kinase [General function predi	84.46
PF09755		310	DUF2046: Uncharacterized conserved protein H4 (DUF	84.46
cd03116		159	MobB Molybdenum is an essential trace element in t	84.44
PF03193		161	DUF258: Protein of unknown function, DUF258; Inter	84.42
PF13604		196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	84.36
TIGR02673		214	FtsE cell division ATP-binding protein FtsE. This	84.34
TIGR00960		216	3a0501s02 Type II (General) Secretory Pathway (IIS	84.29
KOG0976		1265	consensus Rho/Rac1-interacting serine/threonine ki	84.25
cd01983		99	Fer4_NifH The Fer4_NifH superfamily contains a var	84.24
PRK13342		413	recombination factor protein RarA; Reviewed	84.19
TIGR02788		308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	84.17
PRK14528		186	adenylate kinase; Provisional	84.1
PRK10416		318	signal recognition particle-docking protein FtsY;	84.1
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	84.09
PRK15093		330	antimicrobial peptide ABC transporter ATP-binding	84.07
COG4172		534	ABC-type uncharacterized transport system, duplica	84.03
PRK15177		213	Vi polysaccharide export ATP-binding protein VexC;	83.99
cd03259		213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	83.96
COG2805		353	PilT Tfp pilus assembly protein, pilus retraction	83.94
COG4172		534	ABC-type uncharacterized transport system, duplica	83.91
PRK14957		546	DNA polymerase III subunits gamma and tau; Provisi	83.9
PRK03839		180	putative kinase; Provisional	83.9
cd01672		200	TMPK Thymidine monophosphate kinase (TMPK), also k	83.9
cd03225		211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	83.89
TIGR00455		184	apsK adenylylsulfate kinase (apsK). Important resi	83.82
PRK09111		598	DNA polymerase III subunits gamma and tau; Validat	83.82
TIGR00064		272	ftsY signal recognition particle-docking protein F	83.8
COG2884		223	FtsE Predicted ATPase involved in cell division [C	83.74
COG1123		539	ATPase components of various ABC-type transport sy	83.73
PF00005		137	ABC_tran: ABC transporter This structure is on hol	83.73
COG1123		539	ATPase components of various ABC-type transport sy	83.72
PRK14962		472	DNA polymerase III subunits gamma and tau; Provisi	83.71
PRK08116		268	hypothetical protein; Validated	83.7
PRK11308		327	dppF dipeptide transporter ATP-binding subunit; Pr	83.64
PHA02530		300	pseT polynucleotide kinase; Provisional	83.63
PRK09112		351	DNA polymerase III subunit delta'; Validated	83.57
TIGR03574		249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	83.55
cd03255		218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	83.52
TIGR03608		206	L_ocin_972_ABC putative bacteriocin export ABC tra	83.45
cd02034		116	CooC The accessory protein CooC, which contains a	83.44
PRK13768		253	GTPase; Provisional	83.44
COG1493		308	HprK Serine kinase of the HPr protein, regulates c	83.38
PF04665		241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	83.32
PLN03025		319	replication factor C subunit; Provisional	83.31
cd03260		227	ABC_PstB_phosphate_transporter Phosphate uptake is	83.27
TIGR02902		531	spore_lonB ATP-dependent protease LonB. Members of	83.26
PRK09473		330	oppD oligopeptide transporter ATP-binding componen	83.23
cd03292		214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	83.22
cd03296		239	ABC_CysA_sulfate_importer Part of the ABC transpor	83.21
PRK15079		331	oligopeptide ABC transporter ATP-binding protein O	83.18
PLN02318		656	phosphoribulokinase/uridine kinase	83.18
COG4619		223	ABC-type uncharacterized transport system, ATPase	83.13
cd03229		178	ABC_Class3 This class is comprised of all BPD (Bin	83.07
cd03258		233	ABC_MetN_methionine_transporter MetN (also known a	83.05
PRK10436		462	hypothetical protein; Provisional	83.0
PRK05439		311	pantothenate kinase; Provisional	82.97
PF01637		234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	82.92
PF06785		401	UPF0242: Uncharacterised protein family (UPF0242);	82.91
TIGR02868		529	CydC thiol reductant ABC exporter, CydC subunit. T	82.88
TIGR02880		284	cbbX_cfxQ probable Rubsico expression protein CbbX	82.82
cd03224		222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	82.7
cd02026		273	PRK Phosphoribulokinase (PRK) is an enzyme involve	82.69
PRK14963		504	DNA polymerase III subunits gamma and tau; Provisi	82.68
TIGR00678		188	holB DNA polymerase III, delta' subunit. At positi	82.61
PRK14734		200	coaE dephospho-CoA kinase; Provisional	82.56
cd03235		213	ABC_Metallic_Cations ABC component of the metal-ty	82.53
smart00072		184	GuKc Guanylate kinase homologues. Active enzymes c	82.52
PRK02496		184	adk adenylate kinase; Provisional	82.38
PRK11022		326	dppD dipeptide transporter ATP-binding subunit; Pr	82.37
TIGR03864		236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	82.32
PRK04220		301	2-phosphoglycerate kinase; Provisional	82.32
cd03297		214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	82.3
cd03256		241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	82.21
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	82.2
PLN02796		347	D-glycerate 3-kinase	82.04
TIGR02315		243	ABC_phnC phosphonate ABC transporter, ATP-binding	82.03
cd03268		208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	81.99
KOG0924		1042	consensus mRNA splicing factor ATP-dependent RNA h	81.89
PF01695		178	IstB_IS21: IstB-like ATP binding protein; InterPro	81.87
PRK14969		527	DNA polymerase III subunits gamma and tau; Provisi	81.86
PF13173		128	AAA_14: AAA domain	81.82
cd03265		220	ABC_DrrA DrrA is the ATP-binding protein component	81.76
PTZ00112		1164	origin recognition complex 1 protein; Provisional	81.68
COG2804		500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	81.65
TIGR02903		615	spore_lon_C ATP-dependent protease, Lon family. Me	81.65
cd03266		218	ABC_NatA_sodium_exporter NatA is the ATPase compon	81.65
cd03269		210	ABC_putative_ATPase This subfamily is involved in	81.61
smart00787		312	Spc7 Spc7 kinetochore protein. This domain is foun	81.61
cd03219		236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	81.61
PRK11124		242	artP arginine transporter ATP-binding subunit; Pro	81.57
PRK00023		225	cmk cytidylate kinase; Provisional	81.53
COG1428		216	Deoxynucleoside kinases [Nucleotide transport and	81.48
TIGR01184		230	ntrCD nitrate transport ATP-binding subunits C and	81.46
TIGR02640		262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	81.45
PRK14530		215	adenylate kinase; Provisional	81.43
PF00448		196	SRP54: SRP54-type protein, GTPase domain; InterPro	81.42
PRK13539		207	cytochrome c biogenesis protein CcmA; Provisional	81.38
cd03262		213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	81.36
PRK13695		174	putative NTPase; Provisional	81.34
cd03226		205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	81.34
TIGR03238		504	dnd_assoc_3 dnd system-associated protein 3. cereu	81.33
COG2274		709	SunT ABC-type bacteriocin/lantibiotic exporters, c	81.32
PRK14959		624	DNA polymerase III subunits gamma and tau; Provisi	81.3
cd03223		166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	81.26
cd03230		173	ABC_DR_subfamily_A This family of ATP-binding prot	81.21
PRK06620		214	hypothetical protein; Validated	81.21
PRK05428		308	HPr kinase/phosphorylase; Provisional	81.18
PRK05342		412	clpX ATP-dependent protease ATP-binding subunit Cl	81.18
PRK11176		582	lipid transporter ATP-binding/permease protein; Pr	81.18
COG1618		179	Predicted nucleotide kinase [Nucleotide transport	81.15
PF01580		205	FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00	81.12
PRK10908		222	cell division protein FtsE; Provisional	81.11
TIGR00972		247	3a0107s01c2 phosphate ABC transporter, ATP-binding	81.1
PRK14950		585	DNA polymerase III subunits gamma and tau; Provisi	81.1
cd03245		220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	81.09
TIGR01978		243	sufC FeS assembly ATPase SufC. SufC is part of the	81.04
PRK05896		605	DNA polymerase III subunits gamma and tau; Validat	80.98
TIGR02858		270	spore_III_AA stage III sporulation protein AA. Mem	80.97
PRK03731		171	aroL shikimate kinase II; Reviewed	80.92
PF13479		213	AAA_24: AAA domain	80.9
TIGR03410		230	urea_trans_UrtE urea ABC transporter, ATP-binding	80.88
TIGR02211		221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	80.86
PRK10646		153	ADP-binding protein; Provisional	80.8
PRK08533		230	flagellar accessory protein FlaH; Reviewed	80.8
PRK10584		228	putative ABC transporter ATP-binding protein YbbA;	80.79
PF00158		168	Sigma54_activat: Sigma-54 interaction domain; Inte	80.75
TIGR00041		195	DTMP_kinase thymidylate kinase. Function: phosphor	80.69
cd03301		213	ABC_MalK_N The N-terminal ATPase domain of the mal	80.67
TIGR02538		564	type_IV_pilB type IV-A pilus assembly ATPase PilB.	80.67
PRK05973		237	replicative DNA helicase; Provisional	80.64
cd03218		232	ABC_YhbG The ABC transporters belonging to the Yhb	80.6
PLN02348		395	phosphoribulokinase	80.56
cd03294		269	ABC_Pro_Gly_Bertaine This family comprises the gly	80.5
TIGR02746		797	TraC-F-type type-IV secretion system protein TraC.	80.47
PRK11248		255	tauB taurine transporter ATP-binding subunit; Prov	80.46
cd03270		226	ABC_UvrA_I The excision repair protein UvrA domain	80.44
PRK11629		233	lolD lipoprotein transporter ATP-binding subunit;	80.42
PRK04195		482	replication factor C large subunit; Provisional	80.41
PF06414		199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	80.41
PRK14242		253	phosphate transporter ATP-binding protein; Provisi	80.37
cd03234		226	ABCG_White The White subfamily represents ABC tran	80.3
COG1136		226	SalX ABC-type antimicrobial peptide transport syst	80.3
PRK13541		195	cytochrome c biogenesis protein CcmA; Provisional	80.29
TIGR02770		230	nickel_nikD nickel import ATP-binding protein NikD	80.27
PRK09435		332	membrane ATPase/protein kinase; Provisional	80.27
PRK14731		208	coaE dephospho-CoA kinase; Provisional	80.25
TIGR00017		217	cmk cytidylate kinase. This family consists of cyt	80.25
cd03238		176	ABC_UvrA The excision repair protein UvrA; Nucleot	80.17
TIGR00635		305	ruvB Holliday junction DNA helicase, RuvB subunit.	80.16
PRK09087		226	hypothetical protein; Validated	80.1
KOG0922		674	consensus DEAH-box RNA helicase [RNA processing an	80.07
PRK06067		234	flagellar accessory protein FlaH; Validated	80.07
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	80.06

>COG5022 Myosin heavy chain [Cytoskeleton]	Back alignment and domain information

Probab=100.00  E-value=1.9e-208  Score=1898.37  Aligned_cols=801  Identities=43%  Similarity=0.721  Sum_probs=737.7

Q ss_pred             ccCcEEEEecCCCCEEeEEEEEecC--CeeEEEc--CCCcEEEEeCCCcc--cCCCCccCCccccccCCCCCchhHHHHH
Q 001067          117 KKKLQSWFQLPNGNWELGKILSISG--TESVISL--PEGKVLKVKSENLV--SANPDILDGVDDLMQLSYLNEPSVLYNL  190 (1167)
Q Consensus       117 ~~~~~vw~~~~~~~~~~~~v~~~~~--~~~~v~~--~~g~~~~v~~~~~~--~~np~~~~~~~Dl~~L~~LnE~svL~~L  190 (1167)
                      ..|..||+|+.+..|..+.+.+..-  +.++...  .+|....|+...+.  ..+||.++++|||+.|+|||||+|||||
T Consensus         7 ~~g~~~w~p~~e~~Wi~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~P~~~~vdDLt~LSyLNEpsVl~nL   86 (1463)
T COG5022           7 EVGSGCWIPDEEKGWIWAEIIKEAFNKGKVTEEGKKEDGESVSVKKKVLGNDRIKLPKFDGVDDLTELSYLNEPAVLHNL   86 (1463)
T ss_pred             ccCceeeeeccccceeeeeechhhhhccccccchhhccCcccceeehhcccccccCccccCchhhhhhhccCcHHHHHHH
Confidence            4577899999999999999998743  3332222  25555555555443  3457799999999999999999999999


Q ss_pred             HHHhhcCcceeccCCceEecCCCCCCCCCcHHHHHHhhcCCCC--CCchhHHHHHHHHHHHhcCceEEEEEeCCCCCChh
Q 001067          191 HYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKT  268 (1167)
Q Consensus       191 ~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~Y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKT  268 (1167)
                      ++||.+++||||+|-+|||||||+.+|||++++++.|.++...  +|||||||+.||+.|+..++|||||||||||||||
T Consensus        87 ~kRY~n~~IYTYSGlvLIAvNPy~~L~iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiISGESGAGKT  166 (1463)
T COG5022          87 EKRYNNGQIYTYSGLVLIAVNPYRDLGIYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESGAGKT  166 (1463)
T ss_pred             HHHhhcCceeEEeeeEEEEecCcccCCCccHHHHHHhccCccccCCchHHHHHHHHHHHHHhcCCCceEEEecCCCCCch
Confidence            9999999999999999999999999999999999999998876  79999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHccCCC-----CcchhhhhhhHHHHhhcCcccCCCCCCCcccceEEEEEcCCCceeeeeeeeeecccee
Q 001067          269 ETAKIAMQYLAALGGGS-----GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSR  343 (1167)
Q Consensus       269 e~~K~il~yLa~~~~~~-----~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~Ga~i~~yLLEKsR  343 (1167)
                      |+||.||+|||++++++     .|+++||++||||||||||||+||||||||||||+|.||.+|.|+||+|++|||||||
T Consensus       167 e~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~~YLLEKSR  246 (1463)
T COG5022         167 ENAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIETYLLEKSR  246 (1463)
T ss_pred             HHHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceechhhhhhhhhhhh
Confidence            99999999999998765     5899999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeccCCCccchhhHHHHcCCCHHHHhhccCCCccccccccCCCcccCCCcchHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 001067          344 VVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAM  423 (1167)
Q Consensus       344 Vv~q~~gERnfHIFYqLl~G~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~l~~Al~~lg~s~~e~~~i~~i  423 (1167)
                      ||+|+.+|||||||||||+|++..+++.|++..+.+|.||++++|..++|+||+++|+.|+.||++|||+.++|.+||+|
T Consensus       247 VV~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~eeq~~IF~i  326 (1463)
T COG5022         247 VVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEEQDQIFKI  326 (1463)
T ss_pred             hccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence            99999999999999999999888888888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCeeeEeeCCCCccccCChhHHHHHHHhcCCCHHHHHHhHccceeeeCCceEEecCCHHHHHHHHHHHHHHHH
Q 001067          424 LAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIY  503 (1167)
Q Consensus       424 LaAILhLGni~F~~~~~~~~~~~~~~~~l~~aa~LLgv~~~~L~~aL~~~~i~~~~e~i~~~lt~~qA~~~rdalak~LY  503 (1167)
                      ||||||||||+|..+. ++.+.+.+.+.++.+|.|||||+..|.++|+.|.|++|+|.|.+++|..||..+||||||+||
T Consensus       327 LAaILhiGNIef~~~r-~g~a~~~~~~~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~irdslAK~lY  405 (1463)
T COG5022         327 LAAILHIGNIEFKEDR-NGAAIFSDNSVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALY  405 (1463)
T ss_pred             HHHHHhhcceeeeecc-cchhhcCCchHHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHHHHHHHHH
Confidence            9999999999998643 456778899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCCCcceeeeecccCCccCCCCChhHHHHHHhhHHHHHHHHHhhhHHHHHHHHhcCCceeec
Q 001067          504 ACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKV  583 (1167)
Q Consensus       504 ~~LF~wiV~~IN~~L~~~~~~~~~~IgILDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~ey~~EgI~~~~v  583 (1167)
                      ++||+|||++||.+|..+.. ..+|||||||||||+|+.|||||||||||||||||+||+|||++||+||.+|||+|++|
T Consensus       406 ~~lFdwiV~rIN~sL~~~~~-~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~I  484 (1463)
T COG5022         406 SNLFDWIVDRINKSLDHSAA-ASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFI  484 (1463)
T ss_pred             HHHHHHHHHHHHhhccCccc-cccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence            99999999999999987544 56899999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcHhHHHHhhc-CCCccccccccccCCCCCCcHHHHHHHHHHhC--CCCCcccCC--CCceEEEeecceeeecccch
Q 001067          584 DFEDNKDCLNLFEK-KPLGLLSLLDEESTFPNGTDLTFANKLKQHLN--SNPCFRGER--DKSFTVSHYAGEVIYDTTGF  658 (1167)
Q Consensus       584 ~f~dn~~~ldlie~-~p~Gll~lLDee~~~p~~td~~f~~kl~~~~~--~~~~f~~~~--~~~F~I~HyaG~V~Y~~~gf  658 (1167)
                      +|.|||+||||||+ .|.|||++|||||.+|.|||++|..||.+.+.  +++.|+++|  ...|+|+||||+|+|+++||
T Consensus       485 dy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDVeY~veg~  564 (1463)
T COG5022         485 DYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVEYDVEGF  564 (1463)
T ss_pred             ccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhccccCccccccccCCCceEEEeecccceeeccch
Confidence            99999999999997 47999999999999999999999999999886  467788775  56899999999999999999


Q ss_pred             hhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCcccHHHHHHHHHHHHHHHHhccCCeee
Q 001067          659 LEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFI  737 (1167)
Q Consensus       659 leKNrD~l~~d~~~ll~~S~~~l-~~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~tv~~~f~~qL~~Lm~~L~~t~phfI  737 (1167)
                      ++||+|+++.+++.||..|++++ ..+|.......              ..+.++|+++.||.||.+||.+|++|+||||
T Consensus       565 ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~~~--------------~K~~~pT~gs~~K~sl~~Lm~tl~sTqphyI  630 (1463)
T COG5022         565 LDKNKDPLNDDLLELLKASTNEFVSTLFDDEENIE--------------SKGRFPTLGSRFKESLNSLMSTLNSTQPHYI  630 (1463)
T ss_pred             hhhCcchhhHHHHHHHhhccchHHHHhhhhhhhcc--------------ccCCCCcHHHHHHHHHHHHHHHHHhcCCcee
Confidence            99999999999999999999875 66886332111              1245799999999999999999999999999


Q ss_pred             eecCCCCCCCCCCcchhhhhhhhhccCchHhhHhhhcCCCCccChHHHHHHhhhhccccccC------CChHHHHHHHHH
Q 001067          738 RCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS------QDPLSVSVAILH  811 (1167)
Q Consensus       738 rCIkPN~~~~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~------~d~~~~~~~il~  811 (1167)
                      ||||||..|.|+.||..+|++|||||||||+|||+|+|||.|++|+||+.||++|.|.....      .|.+.+|..||.
T Consensus       631 RCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~  710 (1463)
T COG5022         631 RCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSILE  710 (1463)
T ss_pred             EeeCCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999975432      356889999999


Q ss_pred             HcCcCCcceeeCceeeeeeecccccccccccccccc-hhhhhhhhccchhhhhhhhhchhhhhHHHHHHhHHHHHHHHHH
Q 001067          812 QFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHG-ILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALV  890 (1167)
Q Consensus       812 ~~~~~~~~~~iGkTKVFLr~~~l~~LE~~R~~~l~a-av~IQ~~~Rg~~aR~~y~~lr~aai~IQs~~Rg~~aRr~y~~l  890 (1167)
                      .+.++...||+|.||||||+++++.||++|...+.. ++.||+.|||++.|++|......+..+|...+|+..|+.+..-
T Consensus       711 ~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~  790 (1463)
T COG5022         711 ELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYE  790 (1463)
T ss_pred             hhcCChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccc
Confidence            999999999999999999999999999999999876 4799999999999999999999999999999999999876544


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH-HHHHhHHHHH
Q 001067          891 LQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQ-SVIRGWLVRR  934 (1167)
Q Consensus       891 ~~~~~AAi~IQ~~~R~~~~Rr~y~~~r~aai~iQ-s~~Rg~laRr  934 (1167)
                      . ..++++.+|..||....|+.|......++.+| ..+|....+.
T Consensus       791 ~-~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~  834 (1463)
T COG5022         791 L-KWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRE  834 (1463)
T ss_pred             h-HHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            3 45789999999999999999999999999999 5556555544

>PTZ00014 myosin-A; Provisional	Back alignment and domain information

>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins	Back alignment and domain information

>cd01377 MYSc_type_II Myosin motor domain, type II myosins	Back alignment and domain information

>cd01380 MYSc_type_V Myosin motor domain, type V myosins	Back alignment and domain information

>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport	Back alignment and domain information

>cd01378 MYSc_type_I Myosin motor domain, type I myosins	Back alignment and domain information

>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins	Back alignment and domain information

>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins	Back alignment and domain information

>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins	Back alignment and domain information

>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]	Back alignment and domain information

>smart00242 MYSc Myosin	Back alignment and domain information

>cd01379 MYSc_type_III Myosin motor domain, type III myosins	Back alignment and domain information

>cd00124 MYSc Myosin motor domain	Back alignment and domain information

>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins	Back alignment and domain information

>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]	Back alignment and domain information

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]	Back alignment and domain information

>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]	Back alignment and domain information

>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]	Back alignment and domain information

>cd01363 Motor_domain Myosin and Kinesin motor domain	Back alignment and domain information

>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold	Back alignment and domain information

>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]	Back alignment and domain information

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]	Back alignment and domain information

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]	Back alignment and domain information

>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]	Back alignment and domain information

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K	Back alignment and domain information

>COG5022 Myosin heavy chain [Cytoskeleton]	Back alignment and domain information

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K	Back alignment and domain information

>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]	Back alignment and domain information

>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]	Back alignment and domain information

>PTZ00014 myosin-A; Provisional	Back alignment and domain information

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A	Back alignment and domain information

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues	Back alignment and domain information

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]	Back alignment and domain information

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues	Back alignment and domain information

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B	Back alignment and domain information

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A	Back alignment and domain information

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C	Back alignment and domain information

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily	Back alignment and domain information

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	Back alignment and domain information

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN	Back alignment and domain information

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars	Back alignment and domain information

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]	Back alignment and domain information

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport	Back alignment and domain information

>PRK05480 uridine/cytidine kinase; Provisional	Back alignment and domain information

>cd01131 PilT Pilus retraction ATPase PilT	Back alignment and domain information

>PRK06696 uridine kinase; Validated	Back alignment and domain information

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases	Back alignment and domain information

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2	Back alignment and domain information

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis	Back alignment and domain information

>smart00382 AAA ATPases associated with a variety of cellular activities	Back alignment and domain information

>PRK13833 conjugal transfer protein TrbB; Provisional	Back alignment and domain information

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria	Back alignment and domain information

>PRK00300 gmk guanylate kinase; Provisional	Back alignment and domain information

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2	Back alignment and domain information

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)	Back alignment and domain information

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed	Back alignment and domain information

>TIGR00150 HI0065_YjeE ATPase, YjeE family	Back alignment and domain information

>TIGR00235 udk uridine kinase	Back alignment and domain information

>PRK08233 hypothetical protein; Provisional	Back alignment and domain information

>PRK06762 hypothetical protein; Provisional	Back alignment and domain information

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	Back alignment and domain information

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]	Back alignment and domain information

>PRK05541 adenylylsulfate kinase; Provisional	Back alignment and domain information

>PF12846 AAA_10: AAA-like domain	Back alignment and domain information

>PTZ00301 uridine kinase; Provisional	Back alignment and domain information

>TIGR02173 cyt_kin_arch cytidylate kinase, putative	Back alignment and domain information

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda	Back alignment and domain information

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor	Back alignment and domain information

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2	Back alignment and domain information

>PRK07261 topology modulation protein; Provisional	Back alignment and domain information

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway	Back alignment and domain information

>PRK06547 hypothetical protein; Provisional	Back alignment and domain information

>PRK00131 aroK shikimate kinase; Reviewed	Back alignment and domain information

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB	Back alignment and domain information

>PF13245 AAA_19: Part of AAA domain	Back alignment and domain information

>PF05729 NACHT: NACHT domain	Back alignment and domain information

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []	Back alignment and domain information

>PRK08118 topology modulation protein; Reviewed	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>TIGR00554 panK_bact pantothenate kinase, bacterial type	Back alignment and domain information

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases	Back alignment and domain information

>PRK07196 fliI flagellum-specific ATP synthase; Validated	Back alignment and domain information

>PRK08084 DNA replication initiation factor; Provisional	Back alignment and domain information

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp	Back alignment and domain information

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)	Back alignment and domain information

>PRK00889 adenylylsulfate kinase; Provisional	Back alignment and domain information

>TIGR01420 pilT_fam pilus retraction protein PilT	Back alignment and domain information

>PRK10078 ribose 1,5-bisphosphokinase; Provisional	Back alignment and domain information

>PRK14737 gmk guanylate kinase; Provisional	Back alignment and domain information

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2	Back alignment and domain information

>TIGR02928 orc1/cdc6 family replication initiation protein	Back alignment and domain information

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []	Back alignment and domain information

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family	Back alignment and domain information

>PRK13851 type IV secretion system protein VirB11; Provisional	Back alignment and domain information

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)	Back alignment and domain information

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins	Back alignment and domain information

>PRK14738 gmk guanylate kinase; Provisional	Back alignment and domain information

>PRK03846 adenylylsulfate kinase; Provisional	Back alignment and domain information

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)	Back alignment and domain information

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional	Back alignment and domain information

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB	Back alignment and domain information

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)	Back alignment and domain information

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs	Back alignment and domain information

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]	Back alignment and domain information

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B	Back alignment and domain information

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A	Back alignment and domain information

>PRK06217 hypothetical protein; Validated	Back alignment and domain information

>cd01120 RecA-like_NTPases RecA-like NTPases	Back alignment and domain information

>PRK13900 type IV secretion system ATPase VirB11; Provisional	Back alignment and domain information

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR03263 guanyl_kin guanylate kinase	Back alignment and domain information

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ	Back alignment and domain information

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]	Back alignment and domain information

>PRK12377 putative replication protein; Provisional	Back alignment and domain information

>PRK12608 transcription termination factor Rho; Provisional	Back alignment and domain information

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]	Back alignment and domain information

>PRK00411 cdc6 cell division control protein 6; Reviewed	Back alignment and domain information

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences	Back alignment and domain information

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants	Back alignment and domain information

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily	Back alignment and domain information

>PRK08903 DnaA regulatory inactivator Hda; Validated	Back alignment and domain information

>PRK12402 replication factor C small subunit 2; Reviewed	Back alignment and domain information

>COG1660 Predicted P-loop-containing kinase [General function prediction only]	Back alignment and domain information

>PHA02544 44 clamp loader, small subunit; Provisional	Back alignment and domain information

>PRK13764 ATPase; Provisional	Back alignment and domain information

>PRK07003 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate	Back alignment and domain information

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK04040 adenylate kinase; Provisional	Back alignment and domain information

>PRK14527 adenylate kinase; Provisional	Back alignment and domain information

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes	Back alignment and domain information

>PRK04182 cytidylate kinase; Provisional	Back alignment and domain information

>PRK07667 uridine kinase; Provisional	Back alignment and domain information

>TIGR02533 type_II_gspE general secretory pathway protein E	Back alignment and domain information

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]	Back alignment and domain information

>PHA00729 NTP-binding motif containing protein	Back alignment and domain information

>PRK05057 aroK shikimate kinase I; Reviewed	Back alignment and domain information

>PRK00440 rfc replication factor C small subunit; Reviewed	Back alignment and domain information

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes	Back alignment and domain information

>PRK14086 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]	Back alignment and domain information

>PRK14087 dnaA chromosomal replication initiation protein; Provisional	Back alignment and domain information

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []	Back alignment and domain information

>PRK09825 idnK D-gluconate kinase; Provisional	Back alignment and domain information

>PRK08727 hypothetical protein; Validated	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB	Back alignment and domain information

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14732 coaE dephospho-CoA kinase; Provisional	Back alignment and domain information

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family	Back alignment and domain information

>PRK13894 conjugal transfer ATPase TrbB; Provisional	Back alignment and domain information

>PRK06893 DNA replication initiation factor; Validated	Back alignment and domain information

>PRK15453 phosphoribulokinase; Provisional	Back alignment and domain information

>PRK14974 cell division protein FtsY; Provisional	Back alignment and domain information

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2	Back alignment and domain information

>PRK06645 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>TIGR03499 FlhF flagellar biosynthetic protein FlhF	Back alignment and domain information

>PF13555 AAA_29: P-loop containing region of AAA domain	Back alignment and domain information

>PRK06761 hypothetical protein; Provisional	Back alignment and domain information

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	Back alignment and domain information

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]	Back alignment and domain information

>PRK00698 tmk thymidylate kinase; Validated	Back alignment and domain information

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop	Back alignment and domain information

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	Back alignment and domain information

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PRK14531 adenylate kinase; Provisional	Back alignment and domain information

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional	Back alignment and domain information

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []	Back alignment and domain information

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit	Back alignment and domain information

>PRK08356 hypothetical protein; Provisional	Back alignment and domain information

>TIGR00152 dephospho-CoA kinase	Back alignment and domain information

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication	Back alignment and domain information

>TIGR02881 spore_V_K stage V sporulation protein K	Back alignment and domain information

>COG0802 Predicted ATPase or kinase [General function prediction only]	Back alignment and domain information

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain	Back alignment and domain information

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes	Back alignment and domain information

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis	Back alignment and domain information

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A	Back alignment and domain information

>TIGR02673 FtsE cell division ATP-binding protein FtsE	Back alignment and domain information

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein	Back alignment and domain information

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]	Back alignment and domain information

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain	Back alignment and domain information

>PRK13342 recombination factor protein RarA; Reviewed	Back alignment and domain information

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11	Back alignment and domain information

>PRK14528 adenylate kinase; Provisional	Back alignment and domain information

>PRK10416 signal recognition particle-docking protein FtsY; Provisional	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional	Back alignment and domain information

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]	Back alignment and domain information

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional	Back alignment and domain information

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup	Back alignment and domain information

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]	Back alignment and domain information

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK03839 putative kinase; Provisional	Back alignment and domain information

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor	Back alignment and domain information

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota	Back alignment and domain information

>TIGR00455 apsK adenylylsulfate kinase (apsK)	Back alignment and domain information

>PRK09111 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>TIGR00064 ftsY signal recognition particle-docking protein FtsY	Back alignment and domain information

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]	Back alignment and domain information

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	Back alignment and domain information

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems	Back alignment and domain information

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	Back alignment and domain information

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK08116 hypothetical protein; Validated	Back alignment and domain information

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PHA02530 pseT polynucleotide kinase; Provisional	Back alignment and domain information

>PRK09112 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal	Back alignment and domain information

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)	Back alignment and domain information

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group	Back alignment and domain information

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)	Back alignment and domain information

>PRK13768 GTPase; Provisional	Back alignment and domain information

>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]	Back alignment and domain information

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein	Back alignment and domain information

>PLN03025 replication factor C subunit; Provisional	Back alignment and domain information

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient	Back alignment and domain information

>TIGR02902 spore_lonB ATP-dependent protease LonB	Back alignment and domain information

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional	Back alignment and domain information

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane	Back alignment and domain information

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import	Back alignment and domain information

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional	Back alignment and domain information

>PLN02318 phosphoribulokinase/uridine kinase	Back alignment and domain information

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]	Back alignment and domain information

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment	Back alignment and domain information

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport	Back alignment and domain information

>PRK10436 hypothetical protein; Provisional	Back alignment and domain information

>PRK05439 pantothenate kinase; Provisional	Back alignment and domain information

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP	Back alignment and domain information

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function	Back alignment and domain information

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit	Back alignment and domain information

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX	Back alignment and domain information

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids	Back alignment and domain information

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes	Back alignment and domain information

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR00678 holB DNA polymerase III, delta' subunit	Back alignment and domain information

>PRK14734 coaE dephospho-CoA kinase; Provisional	Back alignment and domain information

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters	Back alignment and domain information

>smart00072 GuKc Guanylate kinase homologues	Back alignment and domain information

>PRK02496 adk adenylate kinase; Provisional	Back alignment and domain information

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional	Back alignment and domain information

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system	Back alignment and domain information

>PRK04220 2-phosphoglycerate kinase; Provisional	Back alignment and domain information

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB	Back alignment and domain information

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PLN02796 D-glycerate 3-kinase	Back alignment and domain information

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein	Back alignment and domain information

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance	Back alignment and domain information

>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif	Back alignment and domain information

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PF13173 AAA_14: AAA domain	Back alignment and domain information

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin	Back alignment and domain information

>PTZ00112 origin recognition complex 1 protein; Provisional	Back alignment and domain information

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family	Back alignment and domain information

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake	Back alignment and domain information

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity	Back alignment and domain information

>smart00787 Spc7 Spc7 kinetochore protein	Back alignment and domain information

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine	Back alignment and domain information

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK00023 cmk cytidylate kinase; Provisional	Back alignment and domain information

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]	Back alignment and domain information

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D	Back alignment and domain information

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN	Back alignment and domain information

>PRK14530 adenylate kinase; Provisional	Back alignment and domain information

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]	Back alignment and domain information

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional	Back alignment and domain information

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively	Back alignment and domain information

>PRK13695 putative NTPase; Provisional	Back alignment and domain information

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota	Back alignment and domain information

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3	Back alignment and domain information

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]	Back alignment and domain information

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome	Back alignment and domain information

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity	Back alignment and domain information

>PRK06620 hypothetical protein; Validated	Back alignment and domain information

>PRK05428 HPr kinase/phosphorylase; Provisional	Back alignment and domain information

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional	Back alignment and domain information

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional	Back alignment and domain information

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]	Back alignment and domain information

>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies	Back alignment and domain information

>PRK10908 cell division protein FtsE; Provisional	Back alignment and domain information

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein	Back alignment and domain information

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters	Back alignment and domain information

>TIGR01978 sufC FeS assembly ATPase SufC	Back alignment and domain information

>PRK05896 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>TIGR02858 spore_III_AA stage III sporulation protein AA	Back alignment and domain information

>PRK03731 aroL shikimate kinase II; Reviewed	Back alignment and domain information

>PF13479 AAA_24: AAA domain	Back alignment and domain information

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE	Back alignment and domain information

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein	Back alignment and domain information

>PRK10646 ADP-binding protein; Provisional	Back alignment and domain information

>PRK08533 flagellar accessory protein FlaH; Reviewed	Back alignment and domain information

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional	Back alignment and domain information

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor	Back alignment and domain information

>TIGR00041 DTMP_kinase thymidylate kinase	Back alignment and domain information

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK	Back alignment and domain information

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB	Back alignment and domain information

>PRK05973 replicative DNA helicase; Provisional	Back alignment and domain information

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids	Back alignment and domain information

>PLN02348 phosphoribulokinase	Back alignment and domain information

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea	Back alignment and domain information

>TIGR02746 TraC-F-type type-IV secretion system protein TraC	Back alignment and domain information

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional	Back alignment and domain information

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion	Back alignment and domain information

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional	Back alignment and domain information

>PRK04195 replication factor C large subunit; Provisional	Back alignment and domain information

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []	Back alignment and domain information

>PRK14242 phosphate transporter ATP-binding protein; Provisional	Back alignment and domain information

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors	Back alignment and domain information

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	Back alignment and domain information

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional	Back alignment and domain information

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD	Back alignment and domain information

>PRK09435 membrane ATPase/protein kinase; Provisional	Back alignment and domain information

>PRK14731 coaE dephospho-CoA kinase; Provisional	Back alignment and domain information

>TIGR00017 cmk cytidylate kinase	Back alignment and domain information

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion	Back alignment and domain information

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit	Back alignment and domain information

>PRK09087 hypothetical protein; Validated	Back alignment and domain information

>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK06067 flagellar accessory protein FlaH; Validated	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

Homologous Structure Templates