Query 001068
Match_columns 1166
No_of_seqs 416 out of 2601
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 14:57:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001068.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001068hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 3E-209 6E-214 1905.6 73.3 800 117-933 7-834 (1463)
2 PTZ00014 myosin-A; Provisional 100.0 4E-201 1E-205 1846.7 69.3 756 118-910 32-817 (821)
3 KOG0161 Myosin class II heavy 100.0 4E-191 9E-196 1824.7 67.5 819 111-977 24-863 (1930)
4 cd01383 MYSc_type_VIII Myosin 100.0 4E-190 8E-195 1730.4 66.4 676 163-840 1-677 (677)
5 cd01380 MYSc_type_V Myosin mot 100.0 2E-185 5E-190 1696.5 65.6 670 171-840 1-691 (691)
6 cd01381 MYSc_type_VII Myosin m 100.0 1E-184 3E-189 1683.1 65.2 658 171-840 1-671 (671)
7 cd01377 MYSc_type_II Myosin mo 100.0 4E-184 9E-189 1686.0 67.4 670 166-840 1-693 (693)
8 cd01384 MYSc_type_XI Myosin mo 100.0 2E-183 3E-188 1671.5 63.9 658 170-844 1-674 (674)
9 cd01378 MYSc_type_I Myosin mot 100.0 5E-183 1E-187 1671.5 64.7 655 171-840 1-674 (674)
10 cd01387 MYSc_type_XV Myosin mo 100.0 5E-182 1E-186 1661.6 65.4 666 170-840 1-677 (677)
11 cd01385 MYSc_type_IX Myosin mo 100.0 1E-181 3E-186 1660.9 65.0 667 169-841 6-689 (692)
12 cd01382 MYSc_type_VI Myosin mo 100.0 2E-180 5E-185 1655.7 64.6 662 169-840 3-716 (717)
13 smart00242 MYSc Myosin. Large 100.0 4E-178 9E-183 1635.5 64.9 663 165-841 1-677 (677)
14 KOG0164 Myosin class I heavy c 100.0 8E-179 2E-183 1521.7 52.7 743 169-938 7-789 (1001)
15 cd01379 MYSc_type_III Myosin m 100.0 2E-177 3E-182 1613.5 63.2 633 171-840 1-653 (653)
16 cd00124 MYSc Myosin motor doma 100.0 5E-176 1E-180 1621.3 65.3 667 171-840 1-679 (679)
17 cd01386 MYSc_type_XVIII Myosin 100.0 2E-175 4E-180 1614.5 64.4 666 172-840 2-767 (767)
18 KOG0160 Myosin class V heavy c 100.0 1E-174 2E-179 1574.5 56.0 748 164-933 3-758 (862)
19 KOG0163 Myosin class VI heavy 100.0 1E-171 3E-176 1460.3 66.7 756 121-888 6-834 (1259)
20 KOG0162 Myosin class I heavy c 100.0 9E-173 2E-177 1470.5 43.8 699 168-886 16-735 (1106)
21 PF00063 Myosin_head: Myosin h 100.0 5E-170 1E-174 1583.3 59.8 658 172-829 1-689 (689)
22 KOG4229 Myosin VII, myosin IXB 100.0 2E-115 3E-120 1082.7 24.7 769 163-938 54-1011(1062)
23 cd01363 Motor_domain Myosin an 98.7 1.7E-08 3.7E-13 107.5 6.6 86 237-330 8-98 (186)
24 KOG0161 Myosin class II heavy 98.1 0.00014 3.1E-09 98.2 23.2 568 334-1006 217-871 (1930)
25 PF02736 Myosin_N: Myosin N-te 97.9 3.8E-05 8.2E-10 61.7 6.3 41 120-160 2-42 (42)
26 KOG0520 Uncharacterized conser 97.5 6.2E-05 1.3E-09 94.7 4.7 94 845-938 811-936 (975)
27 KOG0160 Myosin class V heavy c 97.5 0.001 2.2E-08 84.1 13.8 75 864-942 670-744 (862)
28 KOG2128 Ras GTPase-activating 96.9 0.0058 1.3E-07 79.4 11.9 147 849-997 540-704 (1401)
29 PF00612 IQ: IQ calmodulin-bin 96.7 0.0018 3.8E-08 44.2 3.2 19 894-912 2-20 (21)
30 PF00612 IQ: IQ calmodulin-bin 96.4 0.0028 6E-08 43.2 2.8 20 868-887 2-21 (21)
31 COG5022 Myosin heavy chain [Cy 96.4 0.056 1.2E-06 71.1 16.2 99 844-943 793-892 (1463)
32 KOG0164 Myosin class I heavy c 96.3 0.0046 1E-07 74.9 5.6 61 866-937 695-755 (1001)
33 KOG0925 mRNA splicing factor A 95.9 0.0061 1.3E-07 71.5 3.9 65 209-279 23-88 (699)
34 KOG0520 Uncharacterized conser 95.4 0.05 1.1E-06 69.5 9.2 49 893-941 810-858 (975)
35 PTZ00014 myosin-A; Provisional 95.1 0.04 8.7E-07 71.1 7.5 42 893-934 777-818 (821)
36 PF13207 AAA_17: AAA domain; P 94.8 0.021 4.6E-07 55.8 3.1 23 256-278 1-23 (121)
37 smart00015 IQ Short calmodulin 94.8 0.024 5.2E-07 40.7 2.4 19 894-912 4-22 (26)
38 KOG0163 Myosin class VI heavy 94.4 2.4 5.2E-05 52.6 19.1 28 846-873 815-842 (1259)
39 smart00015 IQ Short calmodulin 94.3 0.045 9.9E-07 39.3 3.0 19 868-886 4-22 (26)
40 PF13401 AAA_22: AAA domain; P 93.7 0.048 1E-06 53.9 2.9 29 252-280 2-30 (131)
41 PF13191 AAA_16: AAA ATPase do 93.6 0.048 1E-06 57.1 3.0 34 248-281 18-51 (185)
42 PF13238 AAA_18: AAA domain; P 93.6 0.05 1.1E-06 53.3 2.9 22 257-278 1-22 (129)
43 cd00009 AAA The AAA+ (ATPases 93.4 0.094 2E-06 51.6 4.6 31 249-279 14-44 (151)
44 TIGR03015 pepcterm_ATPase puta 93.2 0.14 2.9E-06 57.5 5.9 28 252-279 41-68 (269)
45 TIGR02322 phosphon_PhnN phosph 93.1 0.067 1.4E-06 56.3 3.1 25 255-279 2-26 (179)
46 KOG2128 Ras GTPase-activating 92.8 0.36 7.8E-06 63.6 9.3 74 844-917 565-646 (1401)
47 cd02019 NK Nucleoside/nucleoti 92.8 0.097 2.1E-06 46.6 3.1 22 257-278 2-23 (69)
48 PF00004 AAA: ATPase family as 92.4 0.093 2E-06 51.6 2.8 23 257-279 1-23 (132)
49 PRK05480 uridine/cytidine kina 92.2 0.12 2.7E-06 55.9 3.7 27 252-278 4-30 (209)
50 cd01131 PilT Pilus retraction 92.2 0.1 2.2E-06 56.3 3.1 25 256-280 3-27 (198)
51 PRK13833 conjugal transfer pro 92.1 0.16 3.5E-06 58.9 4.7 35 244-280 136-170 (323)
52 PRK06696 uridine kinase; Valid 92.1 0.19 4.1E-06 55.2 5.0 40 239-280 9-48 (223)
53 PF01583 APS_kinase: Adenylyls 92.0 0.17 3.7E-06 52.6 4.2 29 254-282 2-30 (156)
54 PF00485 PRK: Phosphoribulokin 91.9 0.11 2.4E-06 55.6 2.9 26 257-282 2-27 (194)
55 smart00382 AAA ATPases associa 91.9 0.1 2.2E-06 50.7 2.4 28 254-281 2-29 (148)
56 cd00820 PEPCK_HprK Phosphoenol 91.8 0.13 2.9E-06 50.0 3.0 23 253-275 14-36 (107)
57 cd01129 PulE-GspE PulE/GspE Th 91.7 0.19 4E-06 56.9 4.5 35 245-280 72-106 (264)
58 cd01918 HprK_C HprK/P, the bif 91.7 0.14 3E-06 52.8 3.2 24 254-277 14-37 (149)
59 PRK00300 gmk guanylate kinase; 91.7 0.12 2.5E-06 55.7 2.8 26 253-278 4-29 (205)
60 PRK09270 nucleoside triphospha 91.6 0.38 8.2E-06 53.0 6.7 35 250-284 29-63 (229)
61 cd02023 UMPK Uridine monophosp 91.6 0.13 2.9E-06 55.1 3.0 22 257-278 2-23 (198)
62 TIGR00235 udk uridine kinase. 91.5 0.17 3.7E-06 54.8 3.8 28 252-279 4-31 (207)
63 TIGR00150 HI0065_YjeE ATPase, 91.5 0.27 5.9E-06 49.8 4.9 28 252-279 20-47 (133)
64 PRK08233 hypothetical protein; 91.4 0.12 2.6E-06 54.2 2.5 25 255-279 4-28 (182)
65 COG0194 Gmk Guanylate kinase [ 91.3 0.14 3E-06 54.4 2.7 25 254-278 4-28 (191)
66 PRK06762 hypothetical protein; 91.2 0.18 3.9E-06 52.4 3.5 25 254-278 2-26 (166)
67 COG0444 DppD ABC-type dipeptid 91.2 0.13 2.8E-06 58.9 2.5 28 252-279 29-56 (316)
68 PRK05541 adenylylsulfate kinas 91.1 0.15 3.3E-06 53.6 2.9 29 252-280 5-33 (176)
69 PF12846 AAA_10: AAA-like doma 91.0 0.18 3.8E-06 57.0 3.5 30 254-283 1-30 (304)
70 TIGR03420 DnaA_homol_Hda DnaA 91.0 0.31 6.8E-06 53.1 5.3 39 242-280 26-64 (226)
71 TIGR02173 cyt_kin_arch cytidyl 90.9 0.16 3.5E-06 52.6 2.8 23 256-278 2-24 (171)
72 PTZ00301 uridine kinase; Provi 90.8 0.18 3.9E-06 55.1 3.1 24 257-280 6-29 (210)
73 TIGR02782 TrbB_P P-type conjug 90.8 0.26 5.7E-06 56.7 4.7 34 245-280 125-158 (299)
74 cd02020 CMPK Cytidine monophos 90.7 0.19 4.1E-06 50.6 3.1 22 257-278 2-23 (147)
75 cd02028 UMPK_like Uridine mono 90.7 0.19 4.1E-06 53.4 3.1 24 257-280 2-25 (179)
76 PRK06547 hypothetical protein; 90.6 0.36 7.8E-06 51.0 5.1 29 250-278 11-39 (172)
77 cd02025 PanK Pantothenate kina 90.6 0.19 4.1E-06 55.3 3.1 24 257-280 2-25 (220)
78 PF08317 Spc7: Spc7 kinetochor 90.6 4.8 0.0001 47.0 14.8 24 1109-1132 273-296 (325)
79 PRK07261 topology modulation p 90.5 0.19 4.2E-06 52.9 3.0 23 256-278 2-24 (171)
80 PRK07196 fliI flagellum-specif 90.5 0.44 9.5E-06 57.4 6.3 42 236-277 137-178 (434)
81 PRK00131 aroK shikimate kinase 90.4 0.22 4.8E-06 51.6 3.3 26 253-278 3-28 (175)
82 PF13245 AAA_19: Part of AAA d 90.3 0.33 7.3E-06 44.2 3.9 28 253-280 9-36 (76)
83 PRK08118 topology modulation p 90.3 0.22 4.8E-06 52.3 3.2 25 255-279 2-26 (167)
84 PF05729 NACHT: NACHT domain 90.3 0.24 5.2E-06 50.6 3.4 27 256-282 2-28 (166)
85 PF07724 AAA_2: AAA domain (Cd 90.2 0.25 5.5E-06 52.1 3.5 25 256-280 5-29 (171)
86 cd01130 VirB11-like_ATPase Typ 90.2 0.19 4.1E-06 53.6 2.6 26 254-279 25-50 (186)
87 TIGR00554 panK_bact pantothena 89.9 0.54 1.2E-05 53.9 6.1 31 251-281 59-89 (290)
88 PRK08084 DNA replication initi 89.9 0.46 1E-05 52.7 5.5 41 241-281 32-72 (235)
89 cd00227 CPT Chloramphenicol (C 89.9 0.26 5.5E-06 51.9 3.3 25 254-278 2-26 (175)
90 TIGR01420 pilT_fam pilus retra 89.8 0.22 4.9E-06 58.4 3.0 35 245-280 114-148 (343)
91 PRK13851 type IV secretion sys 89.7 0.29 6.2E-06 57.4 3.8 31 247-279 157-187 (344)
92 PRK14737 gmk guanylate kinase; 89.7 0.23 5E-06 53.2 2.7 25 254-278 4-28 (186)
93 PRK10078 ribose 1,5-bisphospho 89.6 0.2 4.4E-06 53.3 2.3 23 255-277 3-25 (186)
94 PRK00889 adenylylsulfate kinas 89.6 0.38 8.3E-06 50.5 4.3 29 253-281 3-31 (175)
95 cd00071 GMPK Guanosine monopho 89.5 0.22 4.7E-06 50.6 2.3 23 257-279 2-24 (137)
96 TIGR02928 orc1/cdc6 family rep 89.5 0.34 7.4E-06 56.9 4.3 37 244-280 30-66 (365)
97 PF03266 NTPase_1: NTPase; In 89.4 0.29 6.2E-06 51.6 3.1 24 257-280 2-25 (168)
98 TIGR01313 therm_gnt_kin carboh 89.3 0.21 4.6E-06 51.7 2.2 22 257-278 1-22 (163)
99 PRK14738 gmk guanylate kinase; 89.3 0.28 6.1E-06 53.2 3.1 26 252-277 11-36 (206)
100 cd02024 NRK1 Nicotinamide ribo 89.2 0.26 5.6E-06 52.9 2.7 22 257-278 2-23 (187)
101 TIGR02524 dot_icm_DotB Dot/Icm 89.1 0.28 6E-06 57.9 3.1 29 253-281 133-161 (358)
102 KOG0976 Rho/Rac1-interacting s 89.1 5 0.00011 50.3 13.5 62 1076-1144 350-431 (1265)
103 PF00910 RNA_helicase: RNA hel 89.1 0.3 6.6E-06 47.2 2.9 25 257-281 1-25 (107)
104 PRK03846 adenylylsulfate kinas 89.1 0.51 1.1E-05 50.8 4.9 32 251-282 21-52 (198)
105 PF03668 ATP_bind_2: P-loop AT 89.1 0.27 5.8E-06 55.7 2.8 20 255-274 2-21 (284)
106 PF09755 DUF2046: Uncharacteri 89.1 26 0.00057 40.3 18.4 91 983-1090 152-246 (310)
107 PRK13900 type IV secretion sys 89.0 0.39 8.4E-06 56.1 4.2 32 246-279 154-185 (332)
108 PF00437 T2SE: Type II/IV secr 89.0 0.25 5.5E-06 55.7 2.6 29 253-281 126-154 (270)
109 PRK14961 DNA polymerase III su 88.9 0.51 1.1E-05 55.8 5.2 53 224-280 7-64 (363)
110 PRK10751 molybdopterin-guanine 88.9 0.34 7.3E-06 51.3 3.2 27 256-282 8-34 (173)
111 cd02027 APSK Adenosine 5'-phos 88.9 0.33 7.1E-06 49.9 3.1 24 257-280 2-25 (149)
112 TIGR02525 plasmid_TraJ plasmid 88.7 0.31 6.8E-06 57.7 3.1 28 254-281 149-176 (372)
113 cd01124 KaiC KaiC is a circadi 88.6 0.45 9.8E-06 50.0 4.1 27 256-282 1-27 (187)
114 PF13671 AAA_33: AAA domain; P 88.6 0.26 5.7E-06 49.4 2.2 23 257-279 2-24 (143)
115 PRK06217 hypothetical protein; 88.5 0.31 6.8E-06 51.7 2.8 23 256-278 3-25 (183)
116 TIGR03263 guanyl_kin guanylate 88.4 0.25 5.4E-06 51.9 2.0 24 255-278 2-25 (180)
117 cd01120 RecA-like_NTPases RecA 88.4 0.41 9E-06 48.4 3.5 25 257-281 2-26 (165)
118 PF03205 MobB: Molybdopterin g 88.4 0.39 8.5E-06 49.0 3.3 27 256-282 2-28 (140)
119 COG1125 OpuBA ABC-type proline 88.3 0.26 5.6E-06 54.7 2.0 28 256-283 29-56 (309)
120 COG0572 Udk Uridine kinase [Nu 88.1 0.37 8E-06 52.6 3.0 26 254-279 6-33 (218)
121 COG1102 Cmk Cytidylate kinase 87.9 0.4 8.6E-06 49.8 2.9 23 257-279 3-25 (179)
122 PF07106 TBPIP: Tat binding pr 87.9 6.3 0.00014 41.5 12.1 25 1109-1133 142-166 (169)
123 PRK12377 putative replication 87.9 0.76 1.6E-05 51.5 5.4 46 235-282 84-129 (248)
124 PRK00411 cdc6 cell division co 87.7 0.53 1.2E-05 55.9 4.4 38 244-281 45-82 (394)
125 PRK13764 ATPase; Provisional 87.7 0.5 1.1E-05 59.1 4.2 26 255-280 258-283 (602)
126 PRK12608 transcription termina 87.6 0.46 1E-05 56.0 3.6 42 239-280 118-159 (380)
127 TIGR01360 aden_kin_iso1 adenyl 87.6 0.42 9.2E-06 50.3 3.1 23 256-278 5-27 (188)
128 cd00464 SK Shikimate kinase (S 87.5 0.4 8.7E-06 48.7 2.8 23 256-278 1-23 (154)
129 PRK12402 replication factor C 87.5 0.68 1.5E-05 53.6 5.0 34 247-280 29-62 (337)
130 COG0529 CysC Adenylylsulfate k 87.5 0.78 1.7E-05 48.4 4.7 33 250-282 19-51 (197)
131 PF15290 Syntaphilin: Golgi-lo 87.5 5.6 0.00012 44.5 11.4 40 961-1000 70-109 (305)
132 PRK08903 DnaA regulatory inact 87.4 0.97 2.1E-05 49.5 5.9 31 252-282 40-70 (227)
133 COG1660 Predicted P-loop-conta 87.3 0.37 8.1E-06 53.5 2.4 19 256-274 3-21 (286)
134 cd02021 GntK Gluconate kinase 87.1 0.42 9.2E-06 48.6 2.6 21 257-277 2-22 (150)
135 PHA02544 44 clamp loader, smal 86.8 0.62 1.3E-05 53.7 4.1 35 244-278 32-67 (316)
136 PRK04040 adenylate kinase; Pro 86.8 0.55 1.2E-05 50.4 3.4 25 255-279 3-27 (188)
137 PRK04182 cytidylate kinase; Pr 86.7 0.46 1E-05 49.6 2.7 23 256-278 2-24 (180)
138 TIGR02533 type_II_gspE general 86.7 0.59 1.3E-05 57.4 4.0 35 244-279 233-267 (486)
139 PRK14527 adenylate kinase; Pro 86.6 0.5 1.1E-05 50.5 3.0 28 252-279 4-31 (191)
140 cd02029 PRK_like Phosphoribulo 86.5 0.58 1.3E-05 52.8 3.5 25 257-281 2-26 (277)
141 PRK14087 dnaA chromosomal repl 86.5 2.3 4.9E-05 51.9 8.8 27 255-281 142-168 (450)
142 PRK14964 DNA polymerase III su 86.4 0.78 1.7E-05 56.2 4.8 55 225-282 5-63 (491)
143 COG0563 Adk Adenylate kinase a 86.4 0.54 1.2E-05 50.0 3.0 22 257-278 3-24 (178)
144 PF12718 Tropomyosin_1: Tropom 86.2 8.1 0.00017 39.7 11.3 22 1072-1093 103-124 (143)
145 PRK14086 dnaA chromosomal repl 86.2 2.4 5.2E-05 53.2 8.9 26 256-281 316-341 (617)
146 PRK07667 uridine kinase; Provi 86.2 0.98 2.1E-05 48.5 5.0 27 255-281 18-44 (193)
147 PRK05057 aroK shikimate kinase 86.1 0.56 1.2E-05 49.5 3.0 25 254-278 4-28 (172)
148 PRK00440 rfc replication facto 86.1 1.1 2.3E-05 51.5 5.6 38 243-280 27-64 (319)
149 PRK11637 AmiB activator; Provi 86.1 7.4 0.00016 47.2 12.9 21 1076-1096 169-189 (428)
150 PHA00729 NTP-binding motif con 85.9 1.1 2.4E-05 49.4 5.2 38 241-279 5-42 (226)
151 PRK09825 idnK D-gluconate kina 85.8 0.61 1.3E-05 49.4 3.1 26 254-279 3-28 (176)
152 cd03115 SRP The signal recogni 85.8 0.76 1.6E-05 48.1 3.8 27 256-282 2-28 (173)
153 PF07475 Hpr_kinase_C: HPr Ser 85.7 0.59 1.3E-05 49.2 2.8 23 254-276 18-40 (171)
154 PRK07003 DNA polymerase III su 85.7 2.1 4.6E-05 54.6 8.1 54 224-281 7-65 (830)
155 KOG0971 Microtubule-associated 85.6 25 0.00054 45.2 16.8 79 952-1030 969-1051(1243)
156 TIGR00176 mobB molybdopterin-g 85.6 0.74 1.6E-05 47.8 3.5 26 257-282 2-27 (155)
157 PRK08727 hypothetical protein; 85.5 1.2 2.6E-05 49.4 5.3 32 251-282 38-69 (233)
158 PRK14732 coaE dephospho-CoA ki 85.5 0.45 9.8E-06 51.4 1.9 48 257-304 2-54 (196)
159 COG2204 AtoC Response regulato 85.5 0.89 1.9E-05 55.0 4.6 64 252-320 162-233 (464)
160 PF13555 AAA_29: P-loop contai 85.5 0.85 1.8E-05 40.0 3.2 21 256-276 25-45 (62)
161 COG4608 AppF ABC-type oligopep 85.4 0.44 9.6E-06 53.5 1.9 32 252-283 37-68 (268)
162 PRK13894 conjugal transfer ATP 85.4 0.64 1.4E-05 54.0 3.3 35 245-281 141-175 (319)
163 TIGR01359 UMP_CMP_kin_fam UMP- 85.3 0.63 1.4E-05 49.0 2.9 23 257-279 2-24 (183)
164 PRK14956 DNA polymerase III su 85.3 0.88 1.9E-05 55.4 4.4 53 225-281 10-67 (484)
165 PF00625 Guanylate_kin: Guanyl 85.2 0.64 1.4E-05 49.3 2.9 25 255-279 3-27 (183)
166 PRK15453 phosphoribulokinase; 85.2 0.72 1.6E-05 52.4 3.4 27 253-279 4-30 (290)
167 PRK14974 cell division protein 85.0 1.4 3E-05 51.6 5.7 31 252-282 138-168 (336)
168 PRK06893 DNA replication initi 85.0 1.3 2.9E-05 48.8 5.4 46 235-282 22-67 (229)
169 TIGR03499 FlhF flagellar biosy 85.0 0.82 1.8E-05 52.2 3.8 29 253-281 193-221 (282)
170 PRK06761 hypothetical protein; 84.9 0.61 1.3E-05 53.2 2.7 26 255-280 4-29 (282)
171 PF02367 UPF0079: Uncharacteri 84.9 1.3 2.8E-05 44.3 4.7 27 252-278 13-39 (123)
172 PRK00698 tmk thymidylate kinas 84.8 0.94 2E-05 48.5 4.0 28 254-281 3-30 (205)
173 COG2805 PilT Tfp pilus assembl 84.8 0.72 1.6E-05 52.4 3.1 75 195-281 70-152 (353)
174 TIGR02881 spore_V_K stage V sp 84.6 0.82 1.8E-05 51.5 3.6 31 252-282 40-70 (261)
175 PF07728 AAA_5: AAA domain (dy 84.6 0.73 1.6E-05 46.2 2.9 23 256-278 1-23 (139)
176 PRK14531 adenylate kinase; Pro 84.5 0.82 1.8E-05 48.5 3.4 24 255-278 3-26 (183)
177 cd03293 ABC_NrtD_SsuB_transpor 84.4 0.68 1.5E-05 50.5 2.8 27 252-278 28-54 (220)
178 COG1124 DppF ABC-type dipeptid 84.4 0.71 1.5E-05 51.0 2.8 31 252-282 31-61 (252)
179 PRK08356 hypothetical protein; 84.4 0.65 1.4E-05 49.9 2.5 22 255-276 6-27 (195)
180 PRK05416 glmZ(sRNA)-inactivati 84.3 0.7 1.5E-05 52.9 2.9 21 254-274 6-26 (288)
181 cd03116 MobB Molybdenum is an 84.3 1 2.3E-05 47.0 3.9 28 255-282 2-29 (159)
182 PRK13342 recombination factor 84.2 1.1 2.4E-05 54.0 4.6 43 235-278 18-60 (413)
183 TIGR01166 cbiO cobalt transpor 84.2 0.75 1.6E-05 48.9 2.9 24 253-276 17-40 (190)
184 PF03193 DUF258: Protein of un 84.1 0.51 1.1E-05 49.4 1.5 25 253-277 34-58 (161)
185 TIGR02673 FtsE cell division A 84.0 0.75 1.6E-05 49.8 2.8 27 252-278 26-52 (214)
186 COG4172 ABC-type uncharacteriz 84.0 0.6 1.3E-05 54.8 2.1 28 255-282 37-64 (534)
187 PRK14528 adenylate kinase; Pro 84.0 0.88 1.9E-05 48.6 3.3 24 255-278 2-25 (186)
188 TIGR02788 VirB11 P-type DNA tr 83.9 0.59 1.3E-05 54.1 2.1 26 254-279 144-169 (308)
189 TIGR00960 3a0501s02 Type II (G 83.9 0.75 1.6E-05 50.0 2.8 26 253-278 28-53 (216)
190 PF13604 AAA_30: AAA domain; P 83.9 1.4 3.1E-05 47.4 4.9 39 243-282 8-46 (196)
191 cd01983 Fer4_NifH The Fer4_Nif 83.9 1.1 2.4E-05 41.0 3.5 26 257-282 2-27 (99)
192 COG0802 Predicted ATPase or ki 83.9 1.8 3.9E-05 44.6 5.2 30 251-280 22-51 (149)
193 TIGR00152 dephospho-CoA kinase 83.8 0.75 1.6E-05 49.0 2.7 46 257-302 2-53 (188)
194 PRK15093 antimicrobial peptide 83.8 0.75 1.6E-05 53.7 2.9 27 252-278 31-57 (330)
195 COG4172 ABC-type uncharacteriz 83.8 0.65 1.4E-05 54.6 2.3 30 252-281 311-340 (534)
196 PF00308 Bac_DnaA: Bacterial d 83.8 1.8 3.8E-05 47.7 5.6 43 241-283 19-63 (219)
197 PRK03839 putative kinase; Prov 83.7 0.85 1.8E-05 48.1 3.1 23 256-278 2-24 (180)
198 COG2884 FtsE Predicted ATPase 83.7 0.76 1.7E-05 49.1 2.6 23 255-277 29-51 (223)
199 PRK10416 signal recognition pa 83.7 1.1 2.4E-05 52.1 4.2 31 252-282 112-142 (318)
200 cd01672 TMPK Thymidine monopho 83.7 0.97 2.1E-05 47.7 3.5 25 257-281 3-27 (200)
201 COG1123 ATPase components of v 83.7 0.61 1.3E-05 57.3 2.1 29 253-281 34-62 (539)
202 PRK15177 Vi polysaccharide exp 83.6 0.8 1.7E-05 49.9 2.9 28 252-279 11-38 (213)
203 cd03259 ABC_Carb_Solutes_like 83.6 0.83 1.8E-05 49.5 3.0 27 252-278 24-50 (213)
204 TIGR00455 apsK adenylylsulfate 83.6 1.4 2.9E-05 46.8 4.5 29 252-280 16-44 (184)
205 PF00005 ABC_tran: ABC transpo 83.5 0.69 1.5E-05 46.1 2.2 27 253-279 10-36 (137)
206 PRK14962 DNA polymerase III su 83.5 1.3 2.8E-05 54.3 4.9 52 225-280 6-62 (472)
207 cd03260 ABC_PstB_phosphate_tra 83.5 0.78 1.7E-05 50.2 2.7 27 252-278 24-50 (227)
208 TIGR00064 ftsY signal recognit 83.5 1.9 4.2E-05 49.0 6.0 46 237-282 46-100 (272)
209 TIGR02902 spore_lonB ATP-depen 83.4 1.3 2.8E-05 55.1 5.0 31 249-279 81-111 (531)
210 PRK10436 hypothetical protein; 83.4 0.79 1.7E-05 55.9 3.0 36 244-280 209-244 (462)
211 PRK09112 DNA polymerase III su 83.4 1.5 3.2E-05 51.7 5.2 41 241-281 31-72 (351)
212 TIGR03574 selen_PSTK L-seryl-t 83.4 0.87 1.9E-05 50.8 3.1 24 257-280 2-25 (249)
213 PF07888 CALCOCO1: Calcium bin 83.3 12 0.00026 46.2 12.8 21 1108-1128 279-299 (546)
214 PLN03025 replication factor C 83.3 1.5 3.2E-05 50.9 5.1 37 244-280 24-60 (319)
215 PRK14957 DNA polymerase III su 83.3 1.4 2.9E-05 54.9 5.0 55 224-281 7-65 (546)
216 cd03258 ABC_MetN_methionine_tr 83.3 0.62 1.3E-05 51.2 1.9 28 252-279 29-56 (233)
217 PRK11308 dppF dipeptide transp 83.3 0.8 1.7E-05 53.5 2.9 27 252-278 39-65 (327)
218 PRK09111 DNA polymerase III su 83.3 1.2 2.5E-05 56.2 4.4 32 250-281 42-73 (598)
219 PRK08116 hypothetical protein; 83.3 1.8 3.9E-05 49.1 5.6 47 235-281 94-141 (268)
220 PHA02530 pseT polynucleotide k 83.2 0.84 1.8E-05 52.2 3.0 24 255-278 3-26 (300)
221 KOG0804 Cytoplasmic Zn-finger 83.2 14 0.0003 44.1 12.6 75 955-1029 378-452 (493)
222 cd03225 ABC_cobalt_CbiO_domain 83.2 0.67 1.5E-05 50.1 2.0 26 253-278 26-51 (211)
223 PF04665 Pox_A32: Poxvirus A32 83.2 0.87 1.9E-05 50.7 2.9 26 255-280 14-39 (241)
224 cd03255 ABC_MJ0796_Lo1CDE_FtsE 83.2 0.86 1.9E-05 49.5 2.9 27 252-278 28-54 (218)
225 TIGR03608 L_ocin_972_ABC putat 83.1 0.86 1.9E-05 49.0 2.9 26 253-278 23-48 (206)
226 TIGR02868 CydC thiol reductant 83.1 0.58 1.3E-05 58.0 1.7 29 252-280 359-387 (529)
227 COG1123 ATPase components of v 83.1 0.5 1.1E-05 58.0 1.1 30 253-282 316-345 (539)
228 TIGR02880 cbbX_cfxQ probable R 83.0 0.99 2.1E-05 51.6 3.4 28 256-283 60-87 (284)
229 COG1493 HprK Serine kinase of 83.0 0.95 2.1E-05 51.4 3.1 28 254-281 145-172 (308)
230 PRK13768 GTPase; Provisional 83.0 1.1 2.3E-05 50.5 3.6 27 256-282 4-30 (253)
231 cd03292 ABC_FtsE_transporter F 82.9 0.88 1.9E-05 49.2 2.9 27 252-278 25-51 (214)
232 cd02034 CooC The accessory pro 82.9 1.2 2.6E-05 44.0 3.5 26 257-282 2-27 (116)
233 COG4619 ABC-type uncharacteriz 82.9 0.86 1.9E-05 47.7 2.5 23 254-276 29-51 (223)
234 PLN02318 phosphoribulokinase/u 82.9 1.4 3E-05 54.9 4.7 44 235-278 45-89 (656)
235 PRK09473 oppD oligopeptide tra 82.9 0.79 1.7E-05 53.5 2.6 26 253-278 41-66 (330)
236 cd03296 ABC_CysA_sulfate_impor 82.9 0.89 1.9E-05 50.3 2.9 27 252-278 26-52 (239)
237 PRK06645 DNA polymerase III su 82.9 1.2 2.5E-05 55.1 4.1 45 234-281 26-70 (507)
238 PRK15079 oligopeptide ABC tran 82.8 0.85 1.8E-05 53.3 2.8 27 252-278 45-71 (331)
239 cd03229 ABC_Class3 This class 82.7 0.95 2.1E-05 47.7 2.9 27 252-278 24-50 (178)
240 TIGR00678 holB DNA polymerase 82.5 1.8 3.9E-05 46.0 4.9 37 245-281 4-41 (188)
241 smart00072 GuKc Guanylate kina 82.4 0.94 2E-05 48.2 2.7 23 256-278 4-26 (184)
242 cd03224 ABC_TM1139_LivF_branch 82.4 1 2.2E-05 49.1 3.0 26 252-277 24-49 (222)
243 PF01637 Arch_ATPase: Archaeal 82.3 0.92 2E-05 48.9 2.7 34 245-278 11-44 (234)
244 COG2804 PulE Type II secretory 82.3 0.98 2.1E-05 54.8 3.1 39 242-281 247-285 (500)
245 smart00787 Spc7 Spc7 kinetocho 82.3 26 0.00057 40.7 14.6 24 1109-1132 268-291 (312)
246 cd02026 PRK Phosphoribulokinas 82.3 0.97 2.1E-05 51.4 3.0 22 257-278 2-23 (273)
247 cd03235 ABC_Metallic_Cations A 82.2 0.91 2E-05 49.2 2.6 26 252-277 23-48 (213)
248 KOG1029 Endocytic adaptor prot 82.2 64 0.0014 41.0 18.0 33 1068-1100 526-558 (1118)
249 PRK02496 adk adenylate kinase; 82.1 1.1 2.3E-05 47.5 3.1 22 257-278 4-25 (184)
250 PRK14734 coaE dephospho-CoA ki 82.1 0.88 1.9E-05 49.3 2.4 49 256-304 3-56 (200)
251 PRK11022 dppD dipeptide transp 82.0 0.93 2E-05 52.9 2.8 27 252-278 31-57 (326)
252 PRK14963 DNA polymerase III su 82.0 1.4 3E-05 54.5 4.4 45 234-281 19-63 (504)
253 TIGR03864 PQQ_ABC_ATP ABC tran 82.0 1 2.2E-05 49.7 2.9 26 253-278 26-51 (236)
254 cd03297 ABC_ModC_molybdenum_tr 81.9 1.1 2.3E-05 48.7 3.0 26 252-278 22-47 (214)
255 PRK04220 2-phosphoglycerate ki 81.8 1.6 3.4E-05 50.2 4.4 27 252-278 90-116 (301)
256 cd03256 ABC_PhnC_transporter A 81.8 1 2.2E-05 49.7 2.9 26 253-278 26-51 (241)
257 PLN02796 D-glycerate 3-kinase 81.7 1.1 2.3E-05 52.5 3.0 25 256-280 102-126 (347)
258 TIGR03238 dnd_assoc_3 dnd syst 81.7 1.4 2.9E-05 53.6 4.0 37 236-272 9-50 (504)
259 TIGR02315 ABC_phnC phosphonate 81.6 1 2.3E-05 49.7 2.9 27 252-278 26-52 (243)
260 cd03268 ABC_BcrA_bacitracin_re 81.5 1.1 2.4E-05 48.3 3.0 27 252-278 24-50 (208)
261 TIGR02903 spore_lon_C ATP-depe 81.5 1.8 3.9E-05 54.9 5.2 35 246-280 167-201 (615)
262 KOG0924 mRNA splicing factor A 81.5 0.92 2E-05 56.0 2.4 29 251-282 368-396 (1042)
263 PRK11176 lipid transporter ATP 81.4 0.88 1.9E-05 57.2 2.4 29 252-280 367-395 (582)
264 PRK06620 hypothetical protein; 81.4 1.9 4.1E-05 47.2 4.7 20 255-274 45-64 (214)
265 cd03265 ABC_DrrA DrrA is the A 81.4 1.1 2.4E-05 48.8 2.9 24 253-276 25-48 (220)
266 PRK14969 DNA polymerase III su 81.4 1.7 3.6E-05 54.1 4.8 43 234-280 21-64 (527)
267 COG1428 Deoxynucleoside kinase 81.3 1.3 2.8E-05 48.1 3.3 44 254-302 4-47 (216)
268 cd03219 ABC_Mj1267_LivG_branch 81.3 1.1 2.3E-05 49.5 2.8 25 253-277 25-49 (236)
269 cd03269 ABC_putative_ATPase Th 81.3 1.1 2.5E-05 48.3 3.0 25 253-277 25-49 (210)
270 PRK11124 artP arginine transpo 81.3 1.1 2.4E-05 49.6 2.9 26 252-277 26-51 (242)
271 cd03266 ABC_NatA_sodium_export 81.2 1.1 2.5E-05 48.6 2.9 25 252-276 29-53 (218)
272 PRK00023 cmk cytidylate kinase 81.2 1.2 2.6E-05 49.2 3.1 26 254-279 4-29 (225)
273 TIGR02858 spore_III_AA stage I 81.2 1.3 2.9E-05 50.2 3.5 41 240-280 97-137 (270)
274 PRK14530 adenylate kinase; Pro 81.2 1.2 2.6E-05 48.6 3.1 24 256-279 5-28 (215)
275 PRK13695 putative NTPase; Prov 81.2 1.4 3.1E-05 46.2 3.5 24 257-280 3-26 (174)
276 TIGR02538 type_IV_pilB type IV 81.2 1.1 2.3E-05 56.4 3.0 26 254-279 316-341 (564)
277 PF01695 IstB_IS21: IstB-like 81.1 1.5 3.2E-05 46.6 3.7 30 252-281 45-74 (178)
278 PF01580 FtsK_SpoIIIE: FtsK/Sp 81.1 1.2 2.7E-05 47.9 3.2 26 256-281 40-65 (205)
279 cd03226 ABC_cobalt_CbiO_domain 81.1 1.1 2.4E-05 48.2 2.8 26 252-277 24-49 (205)
280 PRK13539 cytochrome c biogenes 81.0 1.2 2.5E-05 48.3 2.9 26 252-277 26-51 (207)
281 TIGR02640 gas_vesic_GvpN gas v 81.0 1.8 3.9E-05 48.9 4.5 40 235-277 5-44 (262)
282 cd03262 ABC_HisP_GlnQ_permease 81.0 1.2 2.5E-05 48.3 2.9 26 253-278 25-50 (213)
283 TIGR01184 ntrCD nitrate transp 81.0 1.1 2.5E-05 49.2 2.9 27 253-279 10-36 (230)
284 PF13479 AAA_24: AAA domain 81.0 1 2.2E-05 49.2 2.4 22 253-274 2-23 (213)
285 PF00448 SRP54: SRP54-type pro 81.0 1.4 3E-05 47.6 3.5 28 254-281 1-28 (196)
286 cd03223 ABCD_peroxisomal_ALDP 81.0 1.2 2.6E-05 46.6 2.9 28 252-279 25-52 (166)
287 COG2274 SunT ABC-type bacterio 81.0 0.98 2.1E-05 57.9 2.6 28 253-280 498-525 (709)
288 COG1618 Predicted nucleotide k 80.9 1.5 3.3E-05 45.7 3.4 53 255-337 6-58 (179)
289 TIGR03410 urea_trans_UrtE urea 80.8 0.83 1.8E-05 50.1 1.7 28 252-279 24-51 (230)
290 PRK05342 clpX ATP-dependent pr 80.8 2 4.2E-05 51.8 4.9 61 218-278 59-132 (412)
291 PF13173 AAA_14: AAA domain 80.8 1.4 3E-05 43.9 3.2 26 254-279 2-27 (128)
292 cd03245 ABCC_bacteriocin_expor 80.7 1.2 2.5E-05 48.5 2.8 26 252-277 28-53 (220)
293 cd03230 ABC_DR_subfamily_A Thi 80.7 1.2 2.7E-05 46.6 2.9 26 252-277 24-49 (173)
294 TIGR00972 3a0107s01c2 phosphat 80.7 1.2 2.5E-05 49.6 2.9 27 252-278 25-51 (247)
295 PRK03731 aroL shikimate kinase 80.7 1.3 2.9E-05 46.1 3.2 25 255-279 3-27 (171)
296 TIGR00041 DTMP_kinase thymidyl 80.7 1.5 3.2E-05 46.7 3.5 27 254-280 3-29 (195)
297 PTZ00112 origin recognition co 80.7 2.4 5.2E-05 54.8 5.7 38 244-281 770-808 (1164)
298 PRK10908 cell division protein 80.6 1.2 2.6E-05 48.6 2.9 26 252-277 26-51 (222)
299 PF00158 Sigma54_activat: Sigm 80.6 1 2.2E-05 47.5 2.2 25 252-276 20-44 (168)
300 TIGR01978 sufC FeS assembly AT 80.6 1.2 2.6E-05 49.3 2.8 25 253-277 25-49 (243)
301 PRK05428 HPr kinase/phosphoryl 80.6 1.2 2.7E-05 51.2 3.0 23 255-277 147-169 (308)
302 TIGR02211 LolD_lipo_ex lipopro 80.5 1.2 2.7E-05 48.4 2.9 25 253-277 30-54 (221)
303 PRK14959 DNA polymerase III su 80.5 1.8 4E-05 54.3 4.7 53 224-280 7-64 (624)
304 PRK10584 putative ABC transpor 80.4 1.2 2.7E-05 48.7 2.9 26 253-278 35-60 (228)
305 PRK10646 ADP-binding protein; 80.4 2.9 6.3E-05 43.4 5.4 26 254-279 28-53 (153)
306 COG1136 SalX ABC-type antimicr 80.3 1.1 2.5E-05 49.3 2.5 21 254-274 31-51 (226)
307 cd03301 ABC_MalK_N The N-termi 80.3 1.3 2.8E-05 48.0 3.0 26 253-278 25-50 (213)
308 PRK14950 DNA polymerase III su 80.2 2 4.3E-05 54.2 5.0 46 234-282 21-66 (585)
309 cd03218 ABC_YhbG The ABC trans 80.2 1.3 2.8E-05 48.6 3.0 27 252-278 24-50 (232)
310 COG1126 GlnQ ABC-type polar am 80.2 1.2 2.5E-05 48.6 2.5 22 253-274 27-48 (240)
311 PRK08533 flagellar accessory p 80.2 2.2 4.9E-05 47.2 4.8 28 253-280 23-50 (230)
312 TIGR00635 ruvB Holliday juncti 80.2 2 4.2E-05 49.3 4.6 28 251-278 27-54 (305)
313 COG4026 Uncharacterized protei 80.2 27 0.00059 38.0 12.4 11 817-827 33-43 (290)
314 PRK11629 lolD lipoprotein tran 80.1 1.3 2.8E-05 48.8 2.9 25 253-277 34-58 (233)
315 cd03238 ABC_UvrA The excision 80.1 1.3 2.9E-05 47.0 2.9 23 253-275 20-42 (176)
316 PF06414 Zeta_toxin: Zeta toxi 80.0 1.5 3.1E-05 47.3 3.2 30 250-279 11-40 (199)
317 cd03234 ABCG_White The White s 80.0 1.4 3E-05 48.3 3.1 28 252-279 31-58 (226)
318 TIGR02746 TraC-F-type type-IV 80.0 1.8 3.9E-05 56.6 4.7 50 253-302 429-478 (797)
319 PRK11248 tauB taurine transpor 80.0 1.3 2.8E-05 49.8 2.9 26 253-278 26-51 (255)
320 COG0630 VirB11 Type IV secreto 80.0 1.6 3.5E-05 50.6 3.8 39 241-280 131-169 (312)
321 cd03270 ABC_UvrA_I The excisio 80.0 1.3 2.8E-05 48.8 2.9 24 252-275 19-42 (226)
322 cd03294 ABC_Pro_Gly_Bertaine T 80.0 1.3 2.7E-05 50.2 2.9 27 252-278 48-74 (269)
323 PRK05973 replicative DNA helic 80.0 2 4.3E-05 47.9 4.3 31 252-282 62-92 (237)
324 PRK14242 phosphate transporter 80.0 1.3 2.7E-05 49.5 2.8 26 252-277 30-55 (253)
325 PRK13541 cytochrome c biogenes 79.9 1.3 2.9E-05 47.3 2.9 26 253-278 25-50 (195)
326 TIGR02770 nickel_nikD nickel i 79.9 1.3 2.7E-05 48.8 2.8 27 252-278 10-36 (230)
327 TIGR00017 cmk cytidylate kinas 79.8 1.5 3.2E-05 48.2 3.3 24 256-279 4-27 (217)
328 PLN02348 phosphoribulokinase 79.8 2.1 4.7E-05 50.8 4.7 29 252-280 47-75 (395)
329 PRK09435 membrane ATPase/prote 79.8 3.1 6.7E-05 48.7 6.0 32 251-282 53-84 (332)
330 TIGR00101 ureG urease accessor 79.7 1.6 3.4E-05 47.3 3.4 26 255-280 2-27 (199)
331 PF12775 AAA_7: P-loop contain 79.7 2.8 6E-05 47.7 5.5 41 235-276 15-55 (272)
332 CHL00081 chlI Mg-protoporyphyr 79.7 2.1 4.5E-05 50.4 4.5 31 251-281 35-65 (350)
333 PRK09087 hypothetical protein; 79.7 2.2 4.7E-05 47.2 4.5 24 253-276 43-66 (226)
334 PRK13947 shikimate kinase; Pro 79.7 1.5 3.3E-05 45.5 3.2 23 256-278 3-25 (171)
335 PRK14731 coaE dephospho-CoA ki 79.6 1.2 2.5E-05 48.6 2.3 22 256-277 7-28 (208)
336 cd03237 ABC_RNaseL_inhibitor_d 79.6 1.4 2.9E-05 49.4 2.9 26 253-278 24-49 (246)
337 PRK05439 pantothenate kinase; 79.5 2.7 5.8E-05 48.7 5.3 31 251-281 83-113 (311)
338 PRK13645 cbiO cobalt transport 79.5 0.95 2.1E-05 51.7 1.7 27 253-279 36-62 (289)
339 PRK06067 flagellar accessory p 79.5 2.1 4.6E-05 47.1 4.4 28 253-280 24-51 (234)
340 PRK04195 replication factor C 79.4 1.8 3.8E-05 53.3 4.1 26 253-278 38-63 (482)
341 PRK13540 cytochrome c biogenes 79.4 1.4 3.1E-05 47.3 2.9 26 252-277 25-50 (200)
342 cd03261 ABC_Org_Solvent_Resist 79.4 1.4 3E-05 48.6 2.9 26 253-278 25-50 (235)
343 cd03267 ABC_NatA_like Similar 79.4 1.4 3E-05 48.8 2.8 26 252-277 45-70 (236)
344 PRK01184 hypothetical protein; 79.4 1.3 2.9E-05 46.7 2.7 18 256-273 3-20 (184)
345 cd03298 ABC_ThiQ_thiamine_tran 79.3 1.4 3E-05 47.6 2.9 27 252-278 22-48 (211)
346 PRK10247 putative ABC transpor 79.3 1.4 3.1E-05 48.3 2.9 25 253-277 32-56 (225)
347 PRK13538 cytochrome c biogenes 79.3 1.5 3.2E-05 47.4 2.9 26 253-278 26-51 (204)
348 PRK14955 DNA polymerase III su 79.2 2.5 5.4E-05 50.7 5.2 38 244-281 27-65 (397)
349 PRK06526 transposase; Provisio 79.2 1.6 3.5E-05 49.1 3.4 30 253-282 97-126 (254)
350 cd01394 radB RadB. The archaea 79.2 2.1 4.6E-05 46.5 4.2 37 245-281 8-46 (218)
351 PRK09099 type III secretion sy 79.2 4.4 9.4E-05 49.2 7.2 38 240-277 149-186 (441)
352 PRK14251 phosphate ABC transpo 79.2 1.4 3E-05 49.1 2.9 27 252-278 28-54 (251)
353 TIGR03877 thermo_KaiC_1 KaiC d 79.2 2.4 5.1E-05 47.1 4.6 27 253-279 20-46 (237)
354 PRK14247 phosphate ABC transpo 79.1 1.4 3.1E-05 49.0 2.9 26 253-278 28-53 (250)
355 TIGR02237 recomb_radB DNA repa 79.1 2.1 4.5E-05 46.2 4.1 28 253-280 11-38 (209)
356 PRK11247 ssuB aliphatic sulfon 79.1 1.4 3E-05 49.6 2.9 27 253-279 37-63 (257)
357 PRK14730 coaE dephospho-CoA ki 79.1 1.7 3.6E-05 46.9 3.3 47 257-304 4-57 (195)
358 KOG0922 DEAH-box RNA helicase 79.0 2.1 4.5E-05 53.2 4.3 61 237-303 52-121 (674)
359 cd00046 DEXDc DEAD-like helica 79.0 1.8 3.8E-05 41.9 3.2 26 256-281 2-27 (144)
360 PF12774 AAA_6: Hydrolytic ATP 79.0 1.8 3.9E-05 48.0 3.6 41 240-280 17-58 (231)
361 PRK04328 hypothetical protein; 79.0 2.3 5E-05 47.7 4.5 34 245-278 12-47 (249)
362 cd03214 ABC_Iron-Siderophores_ 78.9 1.5 3.3E-05 46.3 2.9 26 253-278 24-49 (180)
363 cd03257 ABC_NikE_OppD_transpor 78.9 1.4 3.1E-05 48.1 2.8 25 253-277 30-54 (228)
364 PRK14248 phosphate ABC transpo 78.9 1.5 3.1E-05 49.6 2.9 27 252-278 45-71 (268)
365 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 78.8 1.4 3.1E-05 48.3 2.8 25 253-277 47-71 (224)
366 cd03283 ABC_MutS-like MutS-lik 78.8 1.3 2.9E-05 47.8 2.5 21 255-275 26-46 (199)
367 cd03247 ABCC_cytochrome_bd The 78.8 1.5 3.3E-05 46.2 2.9 26 253-278 27-52 (178)
368 PRK07429 phosphoribulokinase; 78.8 1.5 3.2E-05 51.3 2.9 26 253-278 7-32 (327)
369 cd03232 ABC_PDR_domain2 The pl 78.7 1.5 3.3E-05 46.9 2.8 25 252-276 31-55 (192)
370 cd03263 ABC_subfamily_A The AB 78.7 1.5 3.3E-05 47.6 3.0 26 253-278 27-52 (220)
371 PRK14493 putative bifunctional 78.7 1.8 3.8E-05 49.3 3.5 27 256-282 3-29 (274)
372 PRK14958 DNA polymerase III su 78.7 2.4 5.2E-05 52.5 4.9 54 224-281 7-65 (509)
373 cd03222 ABC_RNaseL_inhibitor T 78.7 1.1 2.3E-05 47.8 1.6 29 252-280 23-51 (177)
374 cd03236 ABC_RNaseL_inhibitor_d 78.6 1.1 2.5E-05 50.3 1.9 32 252-283 24-55 (255)
375 TIGR00679 hpr-ser Hpr(Ser) kin 78.5 1.5 3.3E-05 50.3 2.9 24 254-277 146-169 (304)
376 PF03215 Rad17: Rad17 cell cyc 78.5 2.4 5.1E-05 52.6 4.8 37 243-279 33-70 (519)
377 cd03250 ABCC_MRP_domain1 Domai 78.5 1.5 3.4E-05 47.1 2.9 27 252-278 29-55 (204)
378 PF14532 Sigma54_activ_2: Sigm 78.5 0.9 2E-05 45.9 1.0 26 252-277 19-44 (138)
379 PRK10419 nikE nickel transport 78.4 1.5 3.2E-05 49.6 2.8 24 253-276 37-60 (268)
380 TIGR02323 CP_lyasePhnK phospho 78.4 1.5 3.3E-05 48.9 2.8 26 253-278 28-53 (253)
381 PRK09493 glnQ glutamine ABC tr 78.3 1.6 3.4E-05 48.3 2.9 26 253-278 26-51 (240)
382 cd03215 ABC_Carb_Monos_II This 78.3 1.6 3.4E-05 46.3 2.8 26 253-278 25-50 (182)
383 cd01428 ADK Adenylate kinase ( 78.2 1.6 3.5E-05 46.2 2.9 22 257-278 2-23 (194)
384 PRK13648 cbiO cobalt transport 78.2 1.6 3.4E-05 49.4 2.9 27 252-278 33-59 (269)
385 TIGR01277 thiQ thiamine ABC tr 78.1 1.6 3.4E-05 47.5 2.8 27 252-278 22-48 (213)
386 cd03252 ABCC_Hemolysin The ABC 78.1 1.6 3.4E-05 48.2 2.8 28 252-279 26-53 (237)
387 PRK14250 phosphate ABC transpo 78.1 1.6 3.4E-05 48.4 2.9 25 253-277 28-52 (241)
388 PRK05537 bifunctional sulfate 78.1 2.6 5.6E-05 52.9 5.0 44 235-280 375-418 (568)
389 cd03290 ABCC_SUR1_N The SUR do 78.0 1.6 3.5E-05 47.5 2.8 27 252-278 25-51 (218)
390 TIGR02203 MsbA_lipidA lipid A 78.0 1.3 2.9E-05 55.4 2.5 31 252-282 356-386 (571)
391 TIGR01189 ccmA heme ABC export 78.0 1.7 3.7E-05 46.5 3.0 25 253-277 25-49 (198)
392 PRK07952 DNA replication prote 78.0 2.5 5.4E-05 47.3 4.4 29 254-282 99-127 (244)
393 TIGR00968 3a0106s01 sulfate AB 78.0 1.6 3.6E-05 48.2 2.9 27 252-278 24-50 (237)
394 COG1474 CDC6 Cdc6-related prot 77.9 2.4 5.2E-05 50.3 4.4 40 244-283 32-71 (366)
395 PRK11300 livG leucine/isoleuci 77.9 1.7 3.6E-05 48.5 3.0 26 253-278 30-55 (255)
396 PRK13657 cyclic beta-1,2-gluca 77.9 1.2 2.6E-05 56.2 2.0 30 252-281 359-388 (588)
397 cd03254 ABCC_Glucan_exporter_l 77.8 1.3 2.8E-05 48.6 2.0 27 252-278 27-53 (229)
398 TIGR03005 ectoine_ehuA ectoine 77.8 1.6 3.5E-05 48.6 2.9 25 253-277 25-49 (252)
399 PF13086 AAA_11: AAA domain; P 77.8 2.3 5E-05 45.8 4.0 33 244-278 9-41 (236)
400 PRK14238 phosphate transporter 77.8 1.6 3.5E-05 49.4 2.9 27 253-279 49-75 (271)
401 cd03295 ABC_OpuCA_Osmoprotecti 77.7 1.7 3.6E-05 48.2 2.9 25 252-276 25-49 (242)
402 PRK14267 phosphate ABC transpo 77.7 1.7 3.6E-05 48.5 2.9 27 252-278 28-54 (253)
403 PRK00279 adk adenylate kinase; 77.7 1.8 3.9E-05 47.2 3.1 24 256-279 2-25 (215)
404 PRK11264 putative amino-acid A 77.6 1.7 3.7E-05 48.3 2.9 27 252-278 27-53 (250)
405 PRK08154 anaerobic benzoate ca 77.6 2.7 5.8E-05 48.7 4.6 42 237-278 116-157 (309)
406 PRK10744 pstB phosphate transp 77.6 1.6 3.5E-05 48.9 2.8 27 252-278 37-63 (260)
407 TIGR02204 MsbA_rel ABC transpo 77.6 1.4 3.1E-05 55.2 2.6 29 252-280 364-392 (576)
408 TIGR01351 adk adenylate kinase 77.6 1.7 3.7E-05 47.2 2.8 22 257-278 2-23 (210)
409 PRK14273 phosphate ABC transpo 77.6 1.7 3.6E-05 48.6 2.9 26 253-278 32-57 (254)
410 PF06745 KaiC: KaiC; InterPro 77.6 2 4.4E-05 47.0 3.5 27 253-279 18-44 (226)
411 cd03112 CobW_like The function 77.5 1.6 3.5E-05 45.4 2.5 21 257-277 3-23 (158)
412 TIGR02324 CP_lyasePhnL phospho 77.5 1.7 3.7E-05 47.4 2.9 27 252-278 32-58 (224)
413 PRK10418 nikD nickel transport 77.5 1.7 3.6E-05 48.6 2.9 27 252-278 27-53 (254)
414 PF09726 Macoilin: Transmembra 77.4 4.7 0.0001 51.7 7.0 58 973-1034 460-517 (697)
415 cd03216 ABC_Carb_Monos_I This 77.4 1.8 3.8E-05 45.2 2.8 26 253-278 25-50 (163)
416 PRK00625 shikimate kinase; Pro 77.4 1.9 4.1E-05 45.7 3.1 23 256-278 2-24 (173)
417 cd03213 ABCG_EPDR ABCG transpo 77.4 1.8 3.8E-05 46.5 2.9 27 252-278 33-59 (194)
418 TIGR03878 thermo_KaiC_2 KaiC d 77.3 2.3 5.1E-05 47.9 4.0 28 253-280 35-62 (259)
419 cd03246 ABCC_Protease_Secretio 77.3 1.6 3.4E-05 45.8 2.5 28 252-279 26-53 (173)
420 cd03233 ABC_PDR_domain1 The pl 77.3 1.8 3.8E-05 46.8 2.9 28 252-279 31-58 (202)
421 PRK11174 cysteine/glutathione 77.3 1.3 2.7E-05 55.9 2.0 27 252-278 374-400 (588)
422 cd03228 ABCC_MRP_Like The MRP 77.3 1.8 4E-05 45.3 2.9 27 252-278 26-52 (171)
423 PRK14949 DNA polymerase III su 77.3 2.6 5.7E-05 54.8 4.7 52 225-280 8-64 (944)
424 PRK07994 DNA polymerase III su 77.2 2.8 6.1E-05 53.1 5.0 54 224-281 7-65 (647)
425 PRK05642 DNA replication initi 77.2 3.9 8.4E-05 45.4 5.6 27 255-281 46-72 (234)
426 cd03231 ABC_CcmA_heme_exporter 77.2 1.8 3.9E-05 46.6 2.9 27 252-278 24-50 (201)
427 PRK10771 thiQ thiamine transpo 77.2 1.7 3.8E-05 47.8 2.8 26 252-277 23-48 (232)
428 TIGR03881 KaiC_arch_4 KaiC dom 77.2 3 6.5E-05 45.7 4.7 28 253-280 19-46 (229)
429 CHL00181 cbbX CbbX; Provisiona 77.2 2.2 4.8E-05 48.9 3.7 28 255-282 60-87 (287)
430 PRK14240 phosphate transporter 77.1 1.8 3.8E-05 48.2 2.9 25 253-277 28-52 (250)
431 PRK05563 DNA polymerase III su 77.1 2.8 6.1E-05 52.6 4.9 45 234-281 21-65 (559)
432 PRK13632 cbiO cobalt transport 77.1 1.7 3.8E-05 49.1 2.9 27 252-278 33-59 (271)
433 PRK13341 recombination factor 77.0 2.6 5.7E-05 54.2 4.7 36 243-278 41-76 (725)
434 cd03244 ABCC_MRP_domain2 Domai 77.0 1.5 3.1E-05 47.9 2.1 28 252-279 28-55 (221)
435 PRK13543 cytochrome c biogenes 76.9 1.8 3.9E-05 47.1 2.8 26 253-278 36-61 (214)
436 PRK13946 shikimate kinase; Pro 76.9 1.8 4E-05 45.9 2.9 26 253-278 9-34 (184)
437 TIGR03740 galliderm_ABC gallid 76.9 1.9 4E-05 47.2 3.0 27 252-278 24-50 (223)
438 TIGR01288 nodI ATP-binding ABC 76.8 1.8 3.9E-05 49.9 2.9 26 253-278 29-54 (303)
439 PRK09544 znuC high-affinity zi 76.8 1.8 4E-05 48.4 2.9 26 253-278 29-54 (251)
440 PRK14269 phosphate ABC transpo 76.8 1.8 4E-05 48.1 2.9 25 253-277 27-51 (246)
441 PRK13646 cbiO cobalt transport 76.8 1.7 3.8E-05 49.5 2.8 27 252-278 31-57 (286)
442 PRK06921 hypothetical protein; 76.8 3.7 8E-05 46.6 5.4 29 253-281 116-144 (266)
443 PRK14532 adenylate kinase; Pro 76.8 1.8 3.9E-05 45.9 2.7 23 256-278 2-24 (188)
444 PRK06851 hypothetical protein; 76.8 2.6 5.7E-05 49.8 4.3 31 251-281 27-57 (367)
445 PRK13638 cbiO cobalt transport 76.7 1.7 3.7E-05 49.1 2.7 25 253-277 26-50 (271)
446 PRK13949 shikimate kinase; Pro 76.7 2 4.3E-05 45.2 3.0 24 256-279 3-26 (169)
447 TIGR00929 VirB4_CagE type IV s 76.6 2.3 4.9E-05 55.5 4.1 31 253-283 433-463 (785)
448 cd01128 rho_factor Transcripti 76.6 1.4 3E-05 49.6 1.8 38 243-280 5-42 (249)
449 PRK14255 phosphate ABC transpo 76.6 1.8 4E-05 48.2 2.9 25 252-276 29-53 (252)
450 cd03249 ABC_MTABC3_MDL1_MDL2 M 76.6 1.8 3.9E-05 47.8 2.8 27 252-278 27-53 (238)
451 cd03221 ABCF_EF-3 ABCF_EF-3 E 76.6 1.9 4E-05 44.1 2.6 26 253-278 25-50 (144)
452 cd03114 ArgK-like The function 76.6 2.5 5.3E-05 43.6 3.6 27 257-283 2-28 (148)
453 KOG0056 Heavy metal exporter H 76.6 2.1 4.6E-05 51.3 3.3 32 253-284 563-594 (790)
454 PRK14274 phosphate ABC transpo 76.6 1.9 4E-05 48.4 2.9 27 252-278 36-62 (259)
455 PRK10790 putative multidrug tr 76.5 1.4 3E-05 55.6 2.0 29 252-280 365-393 (592)
456 PRK11701 phnK phosphonate C-P 76.5 1.8 3.9E-05 48.4 2.8 27 252-278 30-56 (258)
457 PRK12323 DNA polymerase III su 76.5 3.1 6.8E-05 52.4 5.0 54 225-281 8-65 (700)
458 PRK10575 iron-hydroxamate tran 76.4 1.7 3.8E-05 48.9 2.6 27 252-278 35-61 (265)
459 PRK00771 signal recognition pa 76.4 4 8.7E-05 49.5 5.8 30 252-281 93-122 (437)
460 PF06785 UPF0242: Uncharacteri 76.4 1.1E+02 0.0025 35.3 16.4 67 958-1024 140-213 (401)
461 TIGR03411 urea_trans_UrtD urea 76.4 1.9 4.2E-05 47.6 2.9 26 253-278 27-52 (242)
462 cd03248 ABCC_TAP TAP, the Tran 76.3 1.9 4.2E-05 47.1 2.9 27 252-278 38-64 (226)
463 PF13476 AAA_23: AAA domain; P 76.3 2.4 5.2E-05 44.7 3.5 26 254-279 19-44 (202)
464 PRK14263 phosphate ABC transpo 76.2 1.9 4.2E-05 48.5 2.9 26 253-278 33-58 (261)
465 PRK05896 DNA polymerase III su 76.2 3.4 7.4E-05 51.8 5.2 55 224-282 7-66 (605)
466 PRK10619 histidine/lysine/argi 76.2 1.9 4.2E-05 48.2 2.9 26 253-278 30-55 (257)
467 TIGR03771 anch_rpt_ABC anchore 76.2 2 4.3E-05 47.1 2.9 26 253-278 5-30 (223)
468 PLN02200 adenylate kinase fami 76.2 2.4 5.3E-05 47.1 3.6 26 253-278 42-67 (234)
469 PF13177 DNA_pol3_delta2: DNA 76.2 4 8.6E-05 42.7 5.0 35 249-283 14-48 (162)
470 TIGR01188 drrA daunorubicin re 76.2 1.9 4.2E-05 49.6 3.0 27 252-278 17-43 (302)
471 TIGR01193 bacteriocin_ABC ABC- 76.1 1.5 3.1E-05 56.7 2.1 28 253-280 499-526 (708)
472 PRK14239 phosphate transporter 76.1 1.9 4.2E-05 47.9 2.9 24 253-276 30-53 (252)
473 cd03217 ABC_FeS_Assembly ABC-t 76.1 2 4.4E-05 46.2 2.9 26 252-277 24-49 (200)
474 TIGR00382 clpX endopeptidase C 76.0 3.1 6.7E-05 50.1 4.7 24 255-278 117-140 (413)
475 COG1936 Predicted nucleotide k 76.0 1.8 4E-05 45.6 2.4 19 257-275 3-21 (180)
476 PRK08699 DNA polymerase III su 76.0 3.3 7.3E-05 48.3 4.9 40 243-282 8-49 (325)
477 COG4778 PhnL ABC-type phosphon 76.0 2 4.3E-05 45.2 2.6 21 254-274 37-57 (235)
478 cd03264 ABC_drug_resistance_li 76.0 1.8 4E-05 46.7 2.6 23 256-278 27-49 (211)
479 PRK13548 hmuV hemin importer A 76.0 1.9 4.1E-05 48.4 2.8 26 253-278 27-52 (258)
480 cd00268 DEADc DEAD-box helicas 76.0 5.8 0.00013 42.3 6.4 43 236-281 21-64 (203)
481 PRK14237 phosphate transporter 76.0 2 4.3E-05 48.5 3.0 27 252-278 44-70 (267)
482 PRK09183 transposase/IS protei 76.0 2.4 5.1E-05 47.9 3.5 27 254-280 102-128 (259)
483 PRK15056 manganese/iron transp 76.0 1.9 4.2E-05 48.7 2.8 26 253-278 32-57 (272)
484 cd00267 ABC_ATPase ABC (ATP-bi 75.9 2.1 4.5E-05 44.1 2.9 23 253-275 24-46 (157)
485 PRK11831 putative ABC transpor 75.9 1.9 4.2E-05 48.6 2.8 25 253-277 32-56 (269)
486 PF00580 UvrD-helicase: UvrD/R 75.9 2.7 5.9E-05 47.6 4.1 36 247-283 7-42 (315)
487 cd04155 Arl3 Arl3 subfamily. 75.9 2.7 5.9E-05 43.3 3.7 30 246-275 6-35 (173)
488 PRK14722 flhF flagellar biosyn 75.9 2.4 5.2E-05 50.3 3.6 28 253-280 136-163 (374)
489 PRK11144 modC molybdate transp 75.9 1.9 4.2E-05 50.8 2.9 24 253-276 23-46 (352)
490 cd03369 ABCC_NFT1 Domain 2 of 75.9 1.7 3.7E-05 46.8 2.3 28 252-279 32-59 (207)
491 PRK14268 phosphate ABC transpo 75.8 2 4.4E-05 48.1 2.9 25 253-277 37-61 (258)
492 PRK14952 DNA polymerase III su 75.8 3.1 6.7E-05 52.3 4.7 44 234-281 18-62 (584)
493 COG3839 MalK ABC-type sugar tr 75.7 1.8 3.9E-05 50.6 2.5 34 400-433 93-126 (338)
494 PRK13975 thymidylate kinase; P 75.7 2.2 4.8E-05 45.4 3.1 24 255-278 3-26 (196)
495 COG4107 PhnK ABC-type phosphon 75.7 1.3 2.8E-05 46.6 1.2 26 255-280 33-58 (258)
496 TIGR00362 DnaA chromosomal rep 75.7 3.8 8.2E-05 49.2 5.4 27 255-281 137-163 (405)
497 PRK00081 coaE dephospho-CoA ki 75.6 1.8 3.8E-05 46.6 2.3 50 255-304 3-57 (194)
498 PRK14265 phosphate ABC transpo 75.6 2 4.4E-05 48.7 2.9 25 253-277 45-69 (274)
499 PRK13631 cbiO cobalt transport 75.6 2 4.3E-05 50.0 2.9 28 252-279 50-77 (320)
500 PRK05201 hslU ATP-dependent pr 75.6 3.8 8.1E-05 49.3 5.1 25 254-278 50-74 (443)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.7e-209 Score=1905.61 Aligned_cols=800 Identities=44% Similarity=0.723 Sum_probs=738.4
Q ss_pred ccCcEEEEecCCCCEEeEEEEEecC--CeeEEEc--CCCcEEEEeCCCcc--cCCCCccCCccccccCCCCCchhHHHHH
Q 001068 117 KKKLQSWFQLPNGNWELGKILSISG--TESVISL--PEGKVLKVKSENLV--SANPDILDGVDDLMQLSYLNEPSVLYNL 190 (1166)
Q Consensus 117 ~~~~~vw~~~~~~~~~~~~v~~~~~--~~~~v~~--~~g~~~~v~~~~~~--~~np~~~~~v~Dl~~L~~LnE~svL~~L 190 (1166)
..|..||+|+.+..|+.|.+.+..- +.++... .+|....|+...+. ..+||.+++||||+.|+|||||+|||||
T Consensus 7 ~~g~~~w~p~~e~~Wi~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~P~~~~vdDLt~LSyLNEpsVl~nL 86 (1463)
T COG5022 7 EVGSGCWIPDEEKGWIWAEIIKEAFNKGKVTEEGKKEDGESVSVKKKVLGNDRIKLPKFDGVDDLTELSYLNEPAVLHNL 86 (1463)
T ss_pred ccCceeeeeccccceeeeeechhhhhccccccchhhccCcccceeehhcccccccCccccCchhhhhhhccCcHHHHHHH
Confidence 4577899999999999999998743 3332222 25555556555443 3457799999999999999999999999
Q ss_pred HHHhhcCccccccCCceEEeCCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChh
Q 001068 191 HYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKT 268 (1166)
Q Consensus 191 ~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKT 268 (1166)
++||.+++||||+|.||||||||+.+|||++++++.|.++... +|||||||+.||+.|+..++|||||||||||||||
T Consensus 87 ~kRY~n~~IYTYSGlvLIAvNPy~~L~iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiISGESGAGKT 166 (1463)
T COG5022 87 EKRYNNGQIYTYSGLVLIAVNPYRDLGIYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESGAGKT 166 (1463)
T ss_pred HHHhhcCceeEEeeeEEEEecCcccCCCccHHHHHHhccCccccCCchHHHHHHHHHHHHHhcCCCceEEEecCCCCCch
Confidence 9999999999999999999999999999999999999999876 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCC-----CchhhhhhhhHHHHhhcCcccCCCCCCCccccEEEEEEcCCCceecceeeeeeccccc
Q 001068 269 ETAKIAMQYLAALGGGS-----GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSR 343 (1166)
Q Consensus 269 e~~K~il~yLa~~~~~~-----~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~F~~~g~i~Ga~i~~yLLEKsR 343 (1166)
|+||.||+|||++++++ .||++||++||||||||||||+||||||||||||+|.||.+|.|+||+|++|||||||
T Consensus 167 e~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~~YLLEKSR 246 (1463)
T COG5022 167 ENAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIETYLLEKSR 246 (1463)
T ss_pred HHHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceechhhhhhhhhhhh
Confidence 99999999999998765 5899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcchhHHHHhcCCCHHhHhhcCCCCccccccccCCCccCCCCcchHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q 001068 344 VVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAM 423 (1166)
Q Consensus 344 Vv~q~~gERnfHIFYqLl~g~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~i 423 (1166)
||+|+.+|||||||||||+|++...++.+++..+.+|.||++++|..++|+||+++|+.|+.||++|||++++|.+||+|
T Consensus 247 VV~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~eeq~~IF~i 326 (1463)
T COG5022 247 VVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEEQDQIFKI 326 (1463)
T ss_pred hccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 99999999999999999999888888888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeeeEEeCCCCccccCChhHHHHHHHHhCCCHHHHHHhHccceeeeCCceEEecCCHHHHHHHHHHHHHHHH
Q 001068 424 LAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIY 503 (1166)
Q Consensus 424 LaAILhLGni~F~~~~~~~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~i~~~~e~~~~~lt~~qA~~~rdalak~LY 503 (1166)
||||||||||+|..+. ++.+.+.+.+.++.||+|||||+..|.++|+.|.|++|+|.|.+++|..||..+||||||+||
T Consensus 327 LAaILhiGNIef~~~r-~g~a~~~~~~~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~irdslAK~lY 405 (1463)
T COG5022 327 LAAILHIGNIEFKEDR-NGAAIFSDNSVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALY 405 (1463)
T ss_pred HHHHHhhcceeeeecc-cchhhcCCchHHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHHHHHHHHH
Confidence 9999999999998643 456778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCcceEEEeecccCcCCCCCChHHHHHhhhhhHHHHhHhhhhhHHHHHHHHhcCCccccc
Q 001068 504 ACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKV 583 (1166)
Q Consensus 504 ~~LF~wiV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~ey~~EgI~~~~v 583 (1166)
++||+|||++||.+|..+.. ..+|||||||||||+|+.|||||||||||||||||+||+|||++||+||.+|||+|++|
T Consensus 406 ~~lFdwiV~rIN~sL~~~~~-~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~I 484 (1463)
T COG5022 406 SNLFDWIVDRINKSLDHSAA-ASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFI 484 (1463)
T ss_pred HHHHHHHHHHHHhhccCccc-cccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 99999999999999987544 56899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcHhHHHhhcC--CCccccccccccCCCCCChHHHHHHHHHHhC--CCCCcccCC--CCCeEEEeecceeeecccch
Q 001068 584 DFEDNKDCLNLFEK--PLGLLSLLDEESTFPNGTDLTFANKLKQHLN--SNPCFRGER--DKSFTVSHYAGEVIYDTTGF 657 (1166)
Q Consensus 584 ~f~dn~~~ldLie~--p~Gll~lLDee~~~p~~td~~f~~kl~~~~~--~~~~f~~~~--~~~F~I~HyaG~V~Y~~~gf 657 (1166)
+|.|||+||||||+ |.|||++|||||.+|.|||++|..||.+.+. +++.|+++| ...|+|+||||+|+|+++||
T Consensus 485 dy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDVeY~veg~ 564 (1463)
T COG5022 485 DYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVEYDVEGF 564 (1463)
T ss_pred ccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhccccCccccccccCCCceEEEeecccceeeccch
Confidence 99999999999999 9999999999999999999999999999886 467788775 56899999999999999999
Q ss_pred hhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeee
Q 001068 658 LEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFI 736 (1166)
Q Consensus 658 leKN~D~l~~d~~~ll~~s~~~l-~~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~Lm~~L~~t~phfI 736 (1166)
++||+|+++.+++.||..|++++ ..+|....... ....++|+++.||.||..||.+|++|+||||
T Consensus 565 ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~~~--------------~K~~~pT~gs~~K~sl~~Lm~tl~sTqphyI 630 (1463)
T COG5022 565 LDKNKDPLNDDLLELLKASTNEFVSTLFDDEENIE--------------SKGRFPTLGSRFKESLNSLMSTLNSTQPHYI 630 (1463)
T ss_pred hhhCcchhhHHHHHHHhhccchHHHHhhhhhhhcc--------------ccCCCCcHHHHHHHHHHHHHHHHHhcCCcee
Confidence 99999999999999999999875 67886332111 1245799999999999999999999999999
Q ss_pred eecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHHHHHHhhhhccccccC------CChHHHHHHHHH
Q 001068 737 RCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS------QDPLSVSVAILH 810 (1166)
Q Consensus 737 rCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~------~d~~~~~~~il~ 810 (1166)
||||||..|.|+.||..+|++|||||||||+|||+|+|||.|++|+||+.||++|.|..... .|.+.+|..||.
T Consensus 631 RCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~ 710 (1463)
T COG5022 631 RCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSILE 710 (1463)
T ss_pred EeeCCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999975432 356889999999
Q ss_pred HcCcCCcceeecceeeeeeecccccccccccccccch-hhhhhhhcccccchhhhccchhhhhHHHHHHhHHHHHHHHHH
Q 001068 811 QFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGI-LRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALV 889 (1166)
Q Consensus 811 ~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R~~~l~aa-v~IQa~~Rg~~aRr~y~~lr~aai~IQs~~RG~~aRr~y~~l 889 (1166)
.+.++...||+|.||||||+++++.||++|+..+..+ +.||+.|||++.|++|....+.+..||...+|+..|+.+..-
T Consensus 711 ~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~ 790 (1463)
T COG5022 711 ELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYE 790 (1463)
T ss_pred hhcCChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccc
Confidence 9999999999999999999999999999999998764 799999999999999999999999999999999999876544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHH-HHHhhHHHHH
Q 001068 890 LQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQ-SVIRGWLVRR 933 (1166)
Q Consensus 890 ~~r~~AAi~IQ~~~R~~~aRk~~~~~r~aai~IQ-s~~Rg~laRr 933 (1166)
. ..++++.+|..||....|+.|.....+++.+| ..+|....+.
T Consensus 791 ~-~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~ 834 (1463)
T COG5022 791 L-KWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRE 834 (1463)
T ss_pred h-HHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3 45789999999999999999999999999999 5555555444
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=4.5e-201 Score=1846.66 Aligned_cols=756 Identities=33% Similarity=0.535 Sum_probs=688.3
Q ss_pred cCcEEEE-------ecCCCCEEeEEEE-EecCCeeEEEc---CCCcEEEEeCCCcccCCCCc-cCCccccccCCCCCchh
Q 001068 118 KKLQSWF-------QLPNGNWELGKIL-SISGTESVISL---PEGKVLKVKSENLVSANPDI-LDGVDDLMQLSYLNEPS 185 (1166)
Q Consensus 118 ~~~~vw~-------~~~~~~~~~~~v~-~~~~~~~~v~~---~~g~~~~v~~~~~~~~np~~-~~~v~Dl~~L~~LnE~s 185 (1166)
++..||+ ++|+..|..|.|+ ...++.++|.. ++|++++|+.+++.++||+. .++++||+.|+|||||+
T Consensus 32 ~g~~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~n~~~~~~~~~Dl~~L~~lnE~~ 111 (821)
T PTZ00014 32 KGFYVWTDKAPAVKEDPDLMFAKCLVLPGSTGEKLTLKQIDPPTNSTFEVKPEHAFNANSQIDPMTYGDIGLLPHTNIPC 111 (821)
T ss_pred cCCeEEeeCCCCCCCCchhheeeEEEEEecCCCEEEEEEecCCCCcEEEeeHHHhhhcCCCCCcCCcchhhhCCCCCHHH
Confidence 4567776 6788999999999 78888888874 47999999999999999997 78999999999999999
Q ss_pred HHHHHHHHhhcCccccccCCceEEeCCCCCCCCCCHHHHHHhhcCCC---CCCchhHHHHHHHHHHHHcCceEEEEEcCC
Q 001068 186 VLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSI---ESPHVYAITDTAIREMIRDEVNQSIIISGE 262 (1166)
Q Consensus 186 vL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~y~~~~~---~~PHiyavA~~Ay~~m~~~~~~QsIiisGE 262 (1166)
|||||+.||.+++||||+|++|||||||+.+|+|+++++..|+++.. .|||||+||+.||+.|+.+++|||||||||
T Consensus 112 vL~nL~~Ry~~~~IYTy~G~iLIavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~m~~~~~~QsIiiSGE 191 (821)
T PTZ00014 112 VLDFLKHRYLKNQIYTTADPLLVAINPFKDLGNTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQTIIVSGE 191 (821)
T ss_pred HHHHHHHHHcCCCCeeeECCEEEEECCCCCCCCCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 99999999999999999999999999999999999999999998542 389999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHhccCCC---CchhhhhhhhHHHHhhcCcccCCCCCCCccccEEEEEEcCCCceecceeeeeec
Q 001068 263 SGAGKTETAKIAMQYLAALGGGS---GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLL 339 (1166)
Q Consensus 263 SGaGKTe~~K~il~yLa~~~~~~---~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~F~~~g~i~Ga~i~~yLL 339 (1166)
|||||||+||++|+|||..+++. .|+++|+++||||||||||||++|||||||||||+|+||.+|.|+||+|++|||
T Consensus 192 SGAGKTe~tK~im~yla~~~~~~~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLL 271 (821)
T PTZ00014 192 SGAGKTEATKQIMRYFASSKSGNMDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRYGSIVAFLL 271 (821)
T ss_pred CCCCchHHHHHHHHHHHHhccCCCcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEeeEEEEEEec
Confidence 99999999999999999987653 699999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCcchhHHHHhcCCCHHhHhhcCCCCccccccccCCCccCCCCcchHHHHHHHHHHHhhcCCCHHHHHH
Q 001068 340 EKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQES 419 (1166)
Q Consensus 340 EKsRVv~q~~gERnfHIFYqLl~g~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~ 419 (1166)
||||||+|++||||||||||||+|+++++|++|+|.++.+|+||++ +|..++++||+++|..++.||++|||+++++..
T Consensus 272 EKSRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~-~~~~~~~~dD~~~f~~~~~A~~~lg~s~~e~~~ 350 (821)
T PTZ00014 272 EKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINP-KCLDVPGIDDVKDFEEVMESFDSMGLSESQIED 350 (821)
T ss_pred cCceeeecCCCCCCEeHHHHHHhCCCHHHHHHcCCCChHhccccCC-CCccCCCCchHHHHHHHHHHHHHcCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999995 588999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCeeeEEeCC---CCccccCC--hhHHHHHHHHhCCCHHHHHHhHccceeeeCCceEEecCCHHHHHHH
Q 001068 420 VFAMLAAVLWLGNVSFTVIDN---ENHVEPVA--DEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDT 494 (1166)
Q Consensus 420 i~~iLaAILhLGni~F~~~~~---~~~~~~~~--~~~l~~aA~LLgv~~~~L~~~L~~~~i~~~~e~~~~~lt~~qA~~~ 494 (1166)
||+|||||||||||+|...+. ++.+.+.+ .+.++.||.||||++++|.++|+++++.+|++.+++++|++||.++
T Consensus 351 If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~~~~~qA~~~ 430 (821)
T PTZ00014 351 IFSILSGVLLLGNVEIEGKEEGGLTDAAAISDESLEVFNEACELLFLDYESLKKELTVKVTYAGNQKIEGPWSKDESEML 430 (821)
T ss_pred HHHHHHHHHhhcceeEeccccCCCCCceeccCCCHHHHHHHHHHhCCCHHHHHHHhhceEEEeCCeeEecCCCHHHHHHH
Confidence 999999999999999986543 23444544 4589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEEEeecccCcCCCCCChHHHHHhhhhhHHHHhHhhhhhHHHHHHHH
Q 001068 495 RDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYI 574 (1166)
Q Consensus 495 rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~ey~ 574 (1166)
||||||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+|||+||+|+|+.||+||.
T Consensus 431 rdalaK~lY~rLF~wiV~~IN~~l~~~~-~~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~ 509 (821)
T PTZ00014 431 KDSLSKAVYEKLFLWIIRNLNATIEPPG-GFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYK 509 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998753 346799999999999999999999999999999999999999999999999
Q ss_pred hcCCcccccccCCcHhHHHhhcC-CCccccccccccCCCCCChHHHHHHHHHHhCCCCCcccCC---CCCeEEEeeccee
Q 001068 575 QDGIDWAKVDFEDNKDCLNLFEK-PLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER---DKSFTVSHYAGEV 650 (1166)
Q Consensus 575 ~EgI~~~~v~f~dn~~~ldLie~-p~Gll~lLDee~~~p~~td~~f~~kl~~~~~~~~~f~~~~---~~~F~I~HyaG~V 650 (1166)
+|||+|+.|+|.||++||||||+ |.|||++|||||++|++||++|++||++++++|++|.+++ ...|+|+||||+|
T Consensus 510 ~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~F~I~HyAG~V 589 (821)
T PTZ00014 510 DEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPKYKPAKVDSNKNFVIKHTIGDI 589 (821)
T ss_pred HccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCccCCCCCCCCceEEEEeceee
Confidence 99999999999999999999997 8999999999999999999999999999999999998764 4789999999999
Q ss_pred eecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHh
Q 001068 651 IYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLE 729 (1166)
Q Consensus 651 ~Y~~~gfleKN~D~l~~d~~~ll~~s~~~l-~~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~Lm~~L~ 729 (1166)
+|+++||++||+|.|+++++++|++|++++ ..+|....... +...+..||+++|+.||+.||++|+
T Consensus 590 ~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~-------------~~~~k~~tv~s~Fk~qL~~Lm~~L~ 656 (821)
T PTZ00014 590 QYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVEK-------------GKLAKGQLIGSQFLNQLDSLMSLIN 656 (821)
T ss_pred eeccCcHHHhccccchHHHHHHHHhCccHHHHHHhccccccc-------------ccccCCCcHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999885 56775422110 1112347999999999999999999
Q ss_pred ccCCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHHHHHHhhhhcccccc--CCChHHHHHH
Q 001068 730 STTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVA--SQDPLSVSVA 807 (1166)
Q Consensus 730 ~t~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~--~~d~~~~~~~ 807 (1166)
+|+||||||||||+.+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|+.||++|.+...+ ..|+++.|+.
T Consensus 657 ~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~ 736 (821)
T PTZ00014 657 STEPHFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAEK 736 (821)
T ss_pred ccCCeEEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHHHhcCcccccCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999886544 3589999999
Q ss_pred HHHHcCcCCcceeecceeeeeeecccccccccccccccchhhhhhhhcccccchhhhccchhhhhHHHHHHhHHHHHHHH
Q 001068 808 ILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYA 887 (1166)
Q Consensus 808 il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R~~~l~aav~IQa~~Rg~~aRr~y~~lr~aai~IQs~~RG~~aRr~y~ 887 (1166)
||..+++++++|++|+||||||++++..||+.|...+.. ....++.||++||||++|++|.
T Consensus 737 il~~~~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~-------------------~~~~~~~iq~~~r~~~~r~~~~ 797 (821)
T PTZ00014 737 LLERSGLPKDSYAIGKTMVFLKKDAAKELTQIQREKLAA-------------------WEPLVSVLEALILKIKKKRKVR 797 (821)
T ss_pred HHHHcCCCcccEEecCCeEEEcCcHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887655431 1123556666666666666664
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001068 888 LVLQRHRAAVVIQRQIKSRVARQ 910 (1166)
Q Consensus 888 ~l~~r~~AAi~IQ~~~R~~~aRk 910 (1166)
++ ..|+++||++||+|++++
T Consensus 798 ~~---~~~~~~iQ~~~R~~l~~~ 817 (821)
T PTZ00014 798 KN---IKSLVRIQAHLRRHLVIA 817 (821)
T ss_pred HH---HHHHHHHHHHHHHHHHHh
Confidence 43 246666777777766654
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=4e-191 Score=1824.68 Aligned_cols=819 Identities=42% Similarity=0.689 Sum_probs=747.3
Q ss_pred ccccccccCcEEEEecCCCCEEeEEEEEecCCeeEEEcCCCcEEE-EeCCCcccCCCCccCCccccccCCCCCchhHHHH
Q 001068 111 TTSYAGKKKLQSWFQLPNGNWELGKILSISGTESVISLPEGKVLK-VKSENLVSANPDILDGVDDLMQLSYLNEPSVLYN 189 (1166)
Q Consensus 111 ~~~~~~~~~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~-v~~~~~~~~np~~~~~v~Dl~~L~~LnE~svL~~ 189 (1166)
+.+|+.|+ +||||+++++|+.|.|.+..|++|+|.+.+|.+++ |+.+++.|+|||.++.+|||+.|+||||||||||
T Consensus 24 ~~~~d~kk--~vWvpd~~e~fv~~~i~~~~~~~v~v~~~~~~~~~~v~~~~v~~~NPPkfdk~eDMa~LT~lNeasVL~n 101 (1930)
T KOG0161|consen 24 SRPFDSKK--WVWVPDPKEGFVKAEIKSEEGEKVTVETEEGGTLTQVKEDDVQKMNPPKFDKVEDMAELTFLNEASVLHN 101 (1930)
T ss_pred ccchhhcc--eeeecCCCCCeeeeeeeccCCCceEEEEcCCceeEEecHHHcCcCCCCCccccccHHHhcccChHHHHhh
Confidence 35677776 89999999999999999998888999998877777 9999999999999999999999999999999999
Q ss_pred HHHHhhcCccccccCCceEEeCCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHcCceEEEEEcCCCCCCh
Q 001068 190 LHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGK 267 (1166)
Q Consensus 190 L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGK 267 (1166)
|++||.+++||||+|.+||+||||+++|||+++++++|+++.+. ||||||||+.||+.|+.+++||||+|+|||||||
T Consensus 102 L~~RY~~~lIyTYSGLFcVviNPyk~lpiYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL~~renQSiLiTGESGAGK 181 (1930)
T KOG0161|consen 102 LKQRYASDLIYTYSGLFCVVINPYKRLPIYTESVVRMYKGKKREEMPPHIFAVADEAYRNMLQDRENQSILITGESGAGK 181 (1930)
T ss_pred HHHHHHhChHHHcccceeEEecCCcCCCCCCHHHHHHhcccccccCCchHHHHHHHHHHHHHhcCCCceEeeecCCCCCc
Confidence 99999999999999999999999999999999999999998665 8999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCC--------CCchhhhhhhhHHHHhhcCcccCCCCCCCccccEEEEEEcCCCceecceeeeeec
Q 001068 268 TETAKIAMQYLAALGGG--------SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLL 339 (1166)
Q Consensus 268 Te~~K~il~yLa~~~~~--------~~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~F~~~g~i~Ga~i~~yLL 339 (1166)
||+||.||+|||.++++ +.++++|+++||||||||||+|++|+|||||||||+|+||.+|.|+||.|++|||
T Consensus 182 TeNTKkVIqyla~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLL 261 (1930)
T KOG0161|consen 182 TENTKKVIQYLASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLL 261 (1930)
T ss_pred chhHHHHHHHHHHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHH
Confidence 99999999999999886 4789999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCcchhHHHHhcCCCHHhHhhcCCCC-ccccccccCCCccCCCCcchHHHHHHHHHHHhhcCCCHHHHH
Q 001068 340 EKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMS-AKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQE 418 (1166)
Q Consensus 340 EKsRVv~q~~gERnfHIFYqLl~g~~~~~r~~l~L~~-~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~ 418 (1166)
|||||++|+++||||||||||++|.++.++..|.|+. +.+|.|++++.. .++|+||+++|+.+..||++|||+++++.
T Consensus 262 EKsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~g~dd~eef~~t~~a~~ilgfs~~E~~ 340 (1930)
T KOG0161|consen 262 EKSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSDNVKDYKFLSNGES-TIPGVDDAEEFQETDEAMDILGFSEEEKI 340 (1930)
T ss_pred HHhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcccchhhhhhccccC-CCCCcchHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999999999999999999999999975 999999999876 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCeeeEEeCCCCccccCChhHHHHHHHHhCCCHHHHHHhHccceeeeCCceEEecCCHHHHHHHHHHH
Q 001068 419 SVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDAL 498 (1166)
Q Consensus 419 ~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~i~~~~e~~~~~lt~~qA~~~rdal 498 (1166)
+||+|+|||||||||.|....+.+++.+.+.+.++.+|+||||+..+|.++|+++++++|++.|.+..+.+|+..+..+|
T Consensus 341 ~~~~i~sailhlGn~~f~~~~~~~qa~~~~~~~a~ka~~llg~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~al 420 (1930)
T KOG0161|consen 341 SIFRIVSAILHLGNIKFKQEPREEQAEFDNTEVADKACHLLGINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVEAL 420 (1930)
T ss_pred HHHHHHHHHHHhcchhhhccccccccCCCCchHHHHHHHHcCCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHHHH
Confidence 99999999999999999987777889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCCcceEEEeecccCcCCCCCChHHHHHhhhhhHHHHhHhhhhhHHHHHHHHhcCC
Q 001068 499 AKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGI 578 (1166)
Q Consensus 499 ak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~ey~~EgI 578 (1166)
||++|+|||.|||.+||.+|+.. ....+|||||||+|||+|+.||||||||||+||+|||+||||||.+||++|.+|||
T Consensus 421 Ak~lYerlF~wlV~riN~sld~~-~~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgI 499 (1930)
T KOG0161|consen 421 AKALYERLFGWLVKRINKSLDSK-QQRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGI 499 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc-cccCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCC
Confidence 99999999999999999999976 56678999999999999999999999999999999999999999999999999999
Q ss_pred cccccccC-CcHhHHHhhcCCCccccccccccCCCCCChHHHHHHHHHHh-CCCCCcccCC----CCCeEEEeecceeee
Q 001068 579 DWAKVDFE-DNKDCLNLFEKPLGLLSLLDEESTFPNGTDLTFANKLKQHL-NSNPCFRGER----DKSFTVSHYAGEVIY 652 (1166)
Q Consensus 579 ~~~~v~f~-dn~~~ldLie~p~Gll~lLDee~~~p~~td~~f~~kl~~~~-~~~~~f~~~~----~~~F~I~HyaG~V~Y 652 (1166)
.|++|+|. |-++||||||+|.||||+|||||++|++||.||++||...| ++||.|.+++ ..+|.|.||||+|.|
T Consensus 500 ew~fidfG~Dlq~~idLIEkp~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V~Y 579 (1930)
T KOG0161|consen 500 EWDFIDFGLDLQPTIDLIEKPMGILSLLDEECVVPKATDKTFLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTVDY 579 (1930)
T ss_pred ceeeeccccchhhhHHHHhchhhHHHHHHHHHhcCCCccchHHHHHHHHhhccCccccCcccccchhhhheeeecceecc
Confidence 99999998 99999999999999999999999999999999999999877 8899999884 579999999999999
Q ss_pred cccchhhhccCcCcHHHHHHHhhcCcc-hhHHhhccccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhcc
Q 001068 653 DTTGFLEKNRDLLHLDSIELLSSCSCH-LPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLEST 731 (1166)
Q Consensus 653 ~~~gfleKN~D~l~~d~~~ll~~s~~~-l~~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~Lm~~L~~t 731 (1166)
+++|||+||+||++..++.+|..|++. ++.+|.+...... ....+.. ...+..+.+.||+..|+.||+.||.+|++|
T Consensus 580 ~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~-~~~~~~~-~~~~K~g~F~Tvs~~~keql~~Lm~~l~~T 657 (1930)
T KOG0161|consen 580 NVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAA-AAKGGEA-LKKTKKGSFRTVSQLYKEQLNKLMTTLRST 657 (1930)
T ss_pred CccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccch-hhhhhhh-hcccCCcchhhHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999998876 5678876221000 0000000 022334567899999999999999999999
Q ss_pred CCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHHHHHHhhhhccccccC--CChHHHHHHHH
Q 001068 732 TPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVSVAIL 809 (1166)
Q Consensus 732 ~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~--~d~~~~~~~il 809 (1166)
+|||||||.||+.|.||.+|.++|+.||||.||||+|||+|.|||.|++|.+|..||.++.+...+. .|.+.+|+.|+
T Consensus 658 ~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~ 737 (1930)
T KOG0161|consen 658 HPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKIL 737 (1930)
T ss_pred CCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999554444332 57789999999
Q ss_pred HHcCcCCcceeecceeeeeeecccccccccccccccchhhhhhhhcccccchhhhccchhhhhHHHHHHhHHHHHHHHHH
Q 001068 810 HQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALV 889 (1166)
Q Consensus 810 ~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R~~~l~aav~IQa~~Rg~~aRr~y~~lr~aai~IQs~~RG~~aRr~y~~l 889 (1166)
..+.++..-|.+|.||||||+|+++.||+.|+..+..+ ++.+|+.+|||++|+.|.+.
T Consensus 738 ~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~i----------------------i~~fQA~~Rg~l~r~~~~kr 795 (1930)
T KOG0161|consen 738 EELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQI----------------------ITLFQAAIRGYLARKEFKKR 795 (1930)
T ss_pred HHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999777655 67889999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHhhHHHHHHHHHhhhhhhhhcccCchhHHHHHHHHHHHHHHHHH
Q 001068 890 LQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLKSVESKGNDSDEVLVKASFLAELQRRVL 969 (1166)
Q Consensus 890 ~~r~~AAi~IQ~~~R~~~aRk~~~~~r~aai~IQs~~Rg~laRr~~~~lr~~~~~~~~~~~~~~l~~~~~~l~~Lq~r~~ 969 (1166)
..+..|+.+||+++|.|.. .|.|.|.+.|.+++++.. .....+++..+..++..++..+.
T Consensus 796 ~~~~~ai~~iQ~N~r~~~~-----------------lr~w~W~~Lf~kvkPLL~---~~~~ee~~~~~~~e~~~l~~~l~ 855 (1930)
T KOG0161|consen 796 LQQLDAIKVIQRNIRAYLK-----------------LRTWPWWRLFTKVKPLLK---VTKTEEEMRAKEEEIQKLKEELQ 855 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHh-----------------hccCHHHHHHHHHHHHHH---hhhhHHHHHHhHHHHHHHHHHHH
Confidence 8889999999999998755 678999999999888765 33334444444445555555544
Q ss_pred HHHHHHHH
Q 001068 970 KAEAALRE 977 (1166)
Q Consensus 970 k~e~~l~e 977 (1166)
+.+....+
T Consensus 856 ~~e~~~~e 863 (1930)
T KOG0161|consen 856 KSESKRKE 863 (1930)
T ss_pred HHHHHHHH
Confidence 44444333
No 4
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=3.9e-190 Score=1730.39 Aligned_cols=676 Identities=86% Similarity=1.317 Sum_probs=645.7
Q ss_pred cCCCCccCCccccccCCCCCchhHHHHHHHHhhcCccccccCCceEEeCCCCCCCCCCHHHHHHhhcCCCCCCchhHHHH
Q 001068 163 SANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIESPHVYAITD 242 (1166)
Q Consensus 163 ~~np~~~~~v~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~y~~~~~~~PHiyavA~ 242 (1166)
|+||+.++++|||+.|++|||++|||+|+.||.+++||||+|++|||||||+.+|+|+++++..|+++...|||||+||+
T Consensus 1 ~~np~~~~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~ly~~~~~~~y~~~~~~~PHifaiA~ 80 (677)
T cd01383 1 PANPDILDGVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVPLYGNDYIEAYRKKSNDSPHVYAIAD 80 (677)
T ss_pred CCCcccccCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEEECCEEEEEcCCcCCCCCCHHHHHHhhCCCCCCCCHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred HHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhccCCCCchhhhhhhhHHHHhhcCcccCCCCCCCccccEEEEE
Q 001068 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIH 322 (1166)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~ 322 (1166)
+||+.|..+++||||||||||||||||++|++|+||+.++++++++++|+++||||||||||||++||||||||||++|+
T Consensus 81 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~l~ 160 (677)
T cd01383 81 TAYNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGGSGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEIH 160 (677)
T ss_pred HHHHHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHhhccccCCCCCcCccceeEEEE
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EcCCCceecceeeeeeccccccccccCCCCcchhHHHHhcCCCHHhHhhcCCCCccccccccCCCccCCCCcchHHHHHH
Q 001068 323 FSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRI 402 (1166)
Q Consensus 323 F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERnfHIFYqLl~g~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~ 402 (1166)
||.+|.|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+++|+.
T Consensus 161 f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~f~~ 240 (677)
T cd01383 161 FSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQRFHT 240 (677)
T ss_pred ECCCCcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeeEEeCCCCccccCChhHHHHHHHHhCCCHHHHHHhHccceeeeCCceE
Q 001068 403 VVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTI 482 (1166)
Q Consensus 403 ~~~Al~~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~i~~~~e~~ 482 (1166)
++.||+.|||+++++..||+|||||||||||+|...++++.+++.+.+.++.||.||||++++|.++|+++++.++++.+
T Consensus 241 ~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~ 320 (677)
T cd01383 241 LVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVADEALSTAAKLIGCNIEDLMLALSTRKMHVNNDNI 320 (677)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCChHHHHHHHHHhCCCHHHHHHHhhhcEEEeCCceE
Confidence 99999999999999999999999999999999998777677788889999999999999999999999999999999999
Q ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEEEeecccCcCCCCCChHHHHHhhhhhHHHHhHh
Q 001068 483 VQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFN 562 (1166)
Q Consensus 483 ~~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~ 562 (1166)
.+++|++||.++||||||+||++||+|||.+||.+|.++......+||||||||||+|+.|||||||||||||+||++||
T Consensus 321 ~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~ 400 (677)
T cd01383 321 VQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANERLQQHFN 400 (677)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998665567899999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHhcCCcccccccCCcHhHHHhhcC-CCccccccccccCCCCCChHHHHHHHHHHhCCCCCcccCCCCCe
Q 001068 563 RHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK-PLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGERDKSF 641 (1166)
Q Consensus 563 ~~~F~~eq~ey~~EgI~~~~v~f~dn~~~ldLie~-p~Gll~lLDee~~~p~~td~~f~~kl~~~~~~~~~f~~~~~~~F 641 (1166)
+++|+.||++|.+|||+|+.|+|.||++||||||+ |.|||++|||||++|++||.+|++||++++++|++|.++++..|
T Consensus 401 ~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~F 480 (677)
T cd01383 401 RHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKTNSCFRGERGGAF 480 (677)
T ss_pred HHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHHHHhCCCCCCCCCCCCce
Confidence 99999999999999999999999999999999997 89999999999999999999999999999999999998888899
Q ss_pred EEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcchhHHhhccccccCCCCccCCCccCCCCCCCCccHHHHHHHHH
Q 001068 642 TVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQL 721 (1166)
Q Consensus 642 ~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~s~~~l~~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~tv~~~fk~qL 721 (1166)
+|+||||+|+|+++||++||+|.++++++++|++|++++..+|......++. ..++..+.++...+..||+++|+.||
T Consensus 481 ~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~~f~~~~~~~s~--~~~~~~~~~~~~~~~~tv~~~fk~qL 558 (677)
T cd01383 481 TVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQLFASSMLIQSP--VVGPLYVASAADSQKLSVGTKFKGQL 558 (677)
T ss_pred EEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHHHHHhhhhcccc--ccccccccccccccCcchHHHHHHHH
Confidence 9999999999999999999999999999999999999998898654322221 11222222333456789999999999
Q ss_pred HHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHHHHHHhhhhccccccCCCh
Q 001068 722 FQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDP 801 (1166)
Q Consensus 722 ~~Lm~~L~~t~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~ 801 (1166)
+.||++|++|+||||||||||+.+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|++||++|++......|+
T Consensus 559 ~~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~ 638 (677)
T cd01383 559 FKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLLENIASQDP 638 (677)
T ss_pred HHHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHHhCccccCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987777789
Q ss_pred HHHHHHHHHHcCcCCcceeecceeeeeeecccccccccc
Q 001068 802 LSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 840 (1166)
Q Consensus 802 ~~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 840 (1166)
+..|+.||+.+++++++|++|+||||||.++++.||+.|
T Consensus 639 ~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 639 LSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred HHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 999999999999999999999999999999999999876
No 5
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=2.3e-185 Score=1696.45 Aligned_cols=670 Identities=49% Similarity=0.817 Sum_probs=623.9
Q ss_pred CccccccCCCCCchhHHHHHHHHhhcCccccccCCceEEeCCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHH
Q 001068 171 GVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREM 248 (1166)
Q Consensus 171 ~v~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m 248 (1166)
|+|||+.|++|||++|||+|+.||.+++||||+|+||||||||+.+|+|+++++..|+++... |||||+||+.||+.|
T Consensus 1 g~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m 80 (691)
T cd01380 1 GKDDLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLPIYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQM 80 (691)
T ss_pred CchhhhhCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEeCCCCCCCcCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999988765 899999999999999
Q ss_pred HHcCceEEEEEcCCCCCChhHHHHHHHHHHHhccCCC-------CchhhhhhhhHHHHhhcCcccCCCCCCCccccEEEE
Q 001068 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS-------GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEI 321 (1166)
Q Consensus 249 ~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~-------~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l 321 (1166)
+.+++||||||||||||||||++|+||+||+.++++. .|+++|+++||||||||||||++||||||||||++|
T Consensus 81 ~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l 160 (691)
T cd01380 81 TRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQI 160 (691)
T ss_pred HhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEEE
Confidence 9999999999999999999999999999999998643 689999999999999999999999999999999999
Q ss_pred EEcCCCceecceeeeeeccccccccccCCCCcchhHHHHhcCCCHHhHhhcCCCCccccccccCCCccCCCCcchHHHHH
Q 001068 322 HFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFR 401 (1166)
Q Consensus 322 ~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERnfHIFYqLl~g~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 401 (1166)
+||.+|.|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+++|+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f~ 240 (691)
T cd01380 161 LFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDFN 240 (691)
T ss_pred EECCCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeeEEeCCCCccccCChhHHHHHHHHhCCCHHHHHHhHccceeeeCCce
Q 001068 402 IVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDT 481 (1166)
Q Consensus 402 ~~~~Al~~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~i~~~~e~ 481 (1166)
.++.||+.|||+++++..||+|||||||||||+|...+++..+...+.+.++.||.||||++++|.++|+++++.+++|.
T Consensus 241 ~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~ 320 (691)
T cd01380 241 ATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRNDSSSISPKDENLQIACELLGVDASDLRKWLVKRQIVTRSEK 320 (691)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCccceecCChHHHHHHHHHhCCCHHHHHHHHHhCEEEECCee
Confidence 99999999999999999999999999999999999766544344456788999999999999999999999999999999
Q ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC--CCCcceEEEeecccCcCCCCCChHHHHHhhhhhHHHH
Q 001068 482 IVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGK--RRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQ 559 (1166)
Q Consensus 482 ~~~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~--~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~ 559 (1166)
+++++|++||.++||+|||+||++||+|||.+||.+|.+.. .....+||||||||||+|+.|||||||||||||+||+
T Consensus 321 i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~ 400 (691)
T cd01380 321 IVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANEKLQQ 400 (691)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhHHHHH
Confidence 99999999999999999999999999999999999998753 3456799999999999999999999999999999999
Q ss_pred hHhhhhhHHHHHHHHhcCCcccccccCCcHhHHHhhcCCCccccccccccCCCCCChHHHHHHHHHHhC--CCCCcccCC
Q 001068 560 HFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKPLGLLSLLDEESTFPNGTDLTFANKLKQHLN--SNPCFRGER 637 (1166)
Q Consensus 560 ~f~~~~F~~eq~ey~~EgI~~~~v~f~dn~~~ldLie~p~Gll~lLDee~~~p~~td~~f~~kl~~~~~--~~~~f~~~~ 637 (1166)
+||+|+|+.||++|.+|||+|+.|+|.||++||||||+|.|||++|||||++|++||.+|++||+++++ +|++|.+++
T Consensus 401 ~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~ 480 (691)
T cd01380 401 QFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESKLGILSLLDEECRLPKGSDESWAQKLYNKLPKKKNPHFEKPR 480 (691)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhCCCchHHHhHHhhcCCCCChHHHHHHHHHHhcccCCCCccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 899998765
Q ss_pred --CCCeEEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCc---cCC-CccCCCCCCCC
Q 001068 638 --DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPV---VGP-LYKAGGADSQK 710 (1166)
Q Consensus 638 --~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~s~~~l-~~lf~~~~~~~s~~~~---~~~-~~~~~~~~~~~ 710 (1166)
...|+|+||||+|+|+++||++||+|.|+++++++|++|++++ ..+|.......+.... .++ .+..++...+.
T Consensus 481 ~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (691)
T cd01380 481 FGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELASSSSSSAKSKPAAKRPPKRAKQHK 560 (691)
T ss_pred CCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccccccccccccccccccccccccCC
Confidence 4689999999999999999999999999999999999999875 5677543211110000 000 01112234456
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHHHHHHhhh
Q 001068 711 LSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGF 790 (1166)
Q Consensus 711 ~tv~~~fk~qL~~Lm~~L~~t~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~ 790 (1166)
.||+++|+.||+.||++|++|+||||||||||+.+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|+.||++
T Consensus 561 ~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~ry~~ 640 (691)
T cd01380 561 PTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPSRWTYEEFAQRYRV 640 (691)
T ss_pred CcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCccccHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccc-cCCChHHHHHHHHHHcCcCCcceeecceeeeeeecccccccccc
Q 001068 791 LLLESV-ASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 840 (1166)
Q Consensus 791 L~~~~~-~~~d~~~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 840 (1166)
|++... ...|++..|+.||..+.+++..|++|+||||||++++..||+.|
T Consensus 641 L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 641 LVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred hCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 999876 35688999999999999889999999999999999999999876
No 6
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=1.2e-184 Score=1683.13 Aligned_cols=658 Identities=43% Similarity=0.733 Sum_probs=622.2
Q ss_pred CccccccCCCCCchhHHHHHHHHhhcCccccccCCceEEeCCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHH
Q 001068 171 GVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREM 248 (1166)
Q Consensus 171 ~v~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m 248 (1166)
|||||+.|++|||++|||+|+.||.+++||||+|++|||||||+.+|+|+++++..|+++... |||||+||+.||+.|
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 80 (671)
T cd01381 1 GVEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILPIYTADEIKLYKNKSIGELPPHIFAISDNAYTNM 80 (671)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHccCCCeEeeCCEEEEeCCCccCCCCCHHHHHHHhcCCccccCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999987654 899999999999999
Q ss_pred HHcCceEEEEEcCCCCCChhHHHHHHHHHHHhccCCC-CchhhhhhhhHHHHhhcCcccCCCCCCCccccEEEEEEcCCC
Q 001068 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS-GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETG 327 (1166)
Q Consensus 249 ~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~-~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~F~~~g 327 (1166)
+++++||||||||||||||||++|++|+||+.+++.. .++++|++|||||||||||||++||||||||||++|+||.+|
T Consensus 81 ~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~F~~~g 160 (671)
T cd01381 81 QREKKNQCIIISGESGAGKTESTKLILQYLAAISGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNKRG 160 (671)
T ss_pred HHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCC
Confidence 9999999999999999999999999999999998764 799999999999999999999999999999999999999999
Q ss_pred ceecceeeeeeccccccccccCCCCcchhHHHHhcCCCHHhHhhcCCCCccccccccCCCccCCCCcchHHHHHHHHHHH
Q 001068 328 KISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEAL 407 (1166)
Q Consensus 328 ~i~Ga~i~~yLLEKsRVv~q~~gERnfHIFYqLl~g~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al 407 (1166)
.|+||+|++||||||||++|++||||||||||||+|+++++|++|+|.++.+|+||++++|..++++||+++|+.++.||
T Consensus 161 ~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al 240 (671)
T cd01381 161 AIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFADIRSAM 240 (671)
T ss_pred cEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHhcCeeeEEeCC--CCccccCChhHHHHHHHHhCCCHHHHHHhHccceeeeCCceEEec
Q 001068 408 DIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN--ENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQN 485 (1166)
Q Consensus 408 ~~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~--~~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~i~~~~e~~~~~ 485 (1166)
+.|||+++++..||+|||||||||||+|...+. ++.+++.+.+.++.||.||||++++|.++||++++.++++.+.++
T Consensus 241 ~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~~~ 320 (671)
T cd01381 241 KVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDDTPNLQRVAQLLGVPIQDLMDALTSRTIFTRGETVVTP 320 (671)
T ss_pred HHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCChHHHHHHHHHhCCCHHHHhhhhceEEEEeCCceEEec
Confidence 999999999999999999999999999987642 356888999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEEEeecccCcCCCCCChHHHHHhhhhhHHHHhHhhhh
Q 001068 486 LTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHL 565 (1166)
Q Consensus 486 lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~ 565 (1166)
++++||.++||||||+||++||+|||.+||.+|.........+||||||||||+|+.|||||||||||||+||++||+++
T Consensus 321 ~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkLQ~~f~~~v 400 (671)
T cd01381 321 LSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENLQQFFVQHI 400 (671)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986534467899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCcccccccCCcHhHHHhhcC-CCccccccccccCCCCCChHHHHHHHHHHhCCCCCcccCC---CCCe
Q 001068 566 FKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK-PLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER---DKSF 641 (1166)
Q Consensus 566 F~~eq~ey~~EgI~~~~v~f~dn~~~ldLie~-p~Gll~lLDee~~~p~~td~~f~~kl~~~~~~~~~f~~~~---~~~F 641 (1166)
|+.||++|.+|||+|..|+|.||++||||||+ |.|||++|||||++|+|||.+|++||++++++|++|..++ +..|
T Consensus 401 f~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~~~~~F 480 (671)
T cd01381 401 FKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHSQHGLHSNYLKPKSTQETQF 480 (671)
T ss_pred HHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHHHHhcCCCCcccCCCCCCCce
Confidence 99999999999999999999999999999997 9999999999999999999999999999999999997653 5789
Q ss_pred EEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCCccHHHHHHHH
Q 001068 642 TVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQ 720 (1166)
Q Consensus 642 ~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~s~~~l-~~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~tv~~~fk~q 720 (1166)
+|+||||+|+|+++||++||+|.++++++++|++|++.+ ..+|..... .+ .+...+..||+++|+.|
T Consensus 481 ~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~-~~-----------~~~~~k~~tv~~~fk~q 548 (671)
T cd01381 481 GINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVE-MG-----------AETRKKKPTLSSQFRRS 548 (671)
T ss_pred EEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhccccc-cc-----------ccccccCCcHHHHHHHH
Confidence 999999999999999999999999999999999999886 456754321 00 01123458999999999
Q ss_pred HHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHHHHHHhhhhcccccc---
Q 001068 721 LFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVA--- 797 (1166)
Q Consensus 721 L~~Lm~~L~~t~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~--- 797 (1166)
|+.||++|++|+||||||||||..+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|+.||++|++...+
T Consensus 549 L~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~ 628 (671)
T cd01381 549 LDLLMRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVPGVKPAYK 628 (671)
T ss_pred HHHHHHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred CCChHHHHHHHHHHcCcCCcceeecceeeeeeecccccccccc
Q 001068 798 SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 840 (1166)
Q Consensus 798 ~~d~~~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 840 (1166)
..|++..|..|++.+.+++++|++|+||||||++++..||..|
T Consensus 629 ~~~~~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 629 QDCLAGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred cccHHHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 3477889999999999999999999999999999999999876
No 7
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=3.9e-184 Score=1685.96 Aligned_cols=670 Identities=47% Similarity=0.760 Sum_probs=624.6
Q ss_pred CCccCCccccccCCCCCchhHHHHHHHHhhcCccccccCCceEEeCCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHH
Q 001068 166 PDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDT 243 (1166)
Q Consensus 166 p~~~~~v~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~ 243 (1166)
||.+++|+||+.|++|||++|||+|+.||.++.||||+|+||||||||+++|+|+++++..|+++... |||||+||+.
T Consensus 1 p~~~~~v~Dl~~L~~l~E~~il~~L~~Ry~~~~iYT~~G~iLIavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHiyaiA~~ 80 (693)
T cd01377 1 PPKFDKVEDMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLPIYTEEVVEMYRGKKREEMPPHIFAIADN 80 (693)
T ss_pred CCcccCcchhhhCCcCCHHHHHHHHHHHHhcCCcEEeecceeEeecCCccCCCCCHHHHHHhcCCCCCCCCCCHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999999987654 8999999999
Q ss_pred HHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhccCCC-----------CchhhhhhhhHHHHhhcCcccCCCCCC
Q 001068 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS-----------GIEYEILKTNPILEAFGNAKTSRNDNS 312 (1166)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~-----------~ie~~il~snpiLEAFGNAkT~~N~NS 312 (1166)
||+.|..+++||||||||||||||||++|+||+||+.++++. .|+++|+++||||||||||||++||||
T Consensus 81 Ay~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NS 160 (693)
T cd01377 81 AYRSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNS 160 (693)
T ss_pred HHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCc
Confidence 999999999999999999999999999999999999997642 689999999999999999999999999
Q ss_pred CccccEEEEEEcCCCceecceeeeeeccccccccccCCCCcchhHHHHhcCCCHHhHhhcCCCCc-cccccccCCCccCC
Q 001068 313 SRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSA-KEYKYLRQSSCYSI 391 (1166)
Q Consensus 313 SRfGk~i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERnfHIFYqLl~g~~~~~r~~l~L~~~-~~y~yL~~~~~~~~ 391 (1166)
||||||++|+||.+|+|+||+|.+|||||||||+|++||||||||||||+|+++++|++|+|.+. .+|+||++++| .+
T Consensus 161 SRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~-~~ 239 (693)
T cd01377 161 SRFGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGEL-TI 239 (693)
T ss_pred cccceeEEEEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCc-cC
Confidence 99999999999999999999999999999999999999999999999999999999999999875 89999999876 57
Q ss_pred CCcchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeeEEeCCCCccccCChhHHHHHHHHhCCCHHHHHHhHc
Q 001068 392 NGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALS 471 (1166)
Q Consensus 392 ~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~ 471 (1166)
+++||+++|+.++.||+.|||+++++..||+|||||||||||+|...++++.+.+.+.+.++.||.||||++++|.++|+
T Consensus 240 ~~~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~ 319 (693)
T cd01377 240 PGVDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGTEEADKAAHLLGVNSADLLKALL 319 (693)
T ss_pred CCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCChHHHHHHHHHhCCCHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999987666778899999999999999999999999999
Q ss_pred cceeeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEEEeecccCcCCCCCChHHHHHh
Q 001068 472 TRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCIN 551 (1166)
Q Consensus 472 ~~~i~~~~e~~~~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcIN 551 (1166)
++++.+|++.+.+++|++||.++||+|||+||++||+|||.+||.+|.+. .....+||||||||||+|+.|||||||||
T Consensus 320 ~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~-~~~~~~IgiLDIfGFE~f~~NsfEQLcIN 398 (693)
T cd01377 320 HPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTK-QQRAYFIGVLDIAGFEIFDFNSFEQLCIN 398 (693)
T ss_pred ceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCceEEEEecccccccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999875 34568999999999999999999999999
Q ss_pred hhhhHHHHhHhhhhhHHHHHHHHhcCCcccccccC-CcHhHHHhhcC-CCccccccccccCCCCCChHHHHHHHHHHhCC
Q 001068 552 YANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEK-PLGLLSLLDEESTFPNGTDLTFANKLKQHLNS 629 (1166)
Q Consensus 552 yaNEkLQ~~f~~~~F~~eq~ey~~EgI~~~~v~f~-dn~~~ldLie~-p~Gll~lLDee~~~p~~td~~f~~kl~~~~~~ 629 (1166)
||||+||++||+++|+.||++|.+|||+|+.|+|. ||++|||||++ |.|||++|||||++|++||.+|++||++++++
T Consensus 399 yaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~~~~~~ 478 (693)
T cd01377 399 YTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHLG 478 (693)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999995 99999999999 99999999999999999999999999999999
Q ss_pred CCCccc--C--CCCCeEEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCC
Q 001068 630 NPCFRG--E--RDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAG 704 (1166)
Q Consensus 630 ~~~f~~--~--~~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~s~~~l-~~lf~~~~~~~s~~~~~~~~~~~~ 704 (1166)
+++|.. + .+..|+|+||||+|+|+++||++||+|.+++|++++|++|++++ ..+|.......+. ..++. +.+
T Consensus 479 ~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~--~~~~~-~~~ 555 (693)
T cd01377 479 KSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGD--GGGGG-GKK 555 (693)
T ss_pred CCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhcccccc--ccccc-CCC
Confidence 988732 2 25689999999999999999999999999999999999999885 5577543211100 00111 111
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHHH
Q 001068 705 GADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKF 784 (1166)
Q Consensus 705 ~~~~~~~tv~~~fk~qL~~Lm~~L~~t~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF 784 (1166)
...++..||+++|+.||+.||++|++|+||||||||||+.+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|
T Consensus 556 ~~~~~~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R~~f~~F 635 (693)
T cd01377 556 KKGGSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNRILYAEF 635 (693)
T ss_pred CcCCccccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCccccHHHH
Confidence 12234589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcccccc--CCChHHHHHHHHHHcCcCCcceeecceeeeeeecccccccccc
Q 001068 785 ARRYGFLLLESVA--SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 840 (1166)
Q Consensus 785 ~~RY~~L~~~~~~--~~d~~~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 840 (1166)
++||++|++...+ ..|++..|+.||+.+++++.+|++|+||||||++++..||..|
T Consensus 636 ~~rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 636 RQRYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred HHHHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 9999999997643 4588999999999999999999999999999999999999876
No 8
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=1.5e-183 Score=1671.51 Aligned_cols=658 Identities=48% Similarity=0.821 Sum_probs=618.5
Q ss_pred CCccccccCCCCCchhHHHHHHHHhhcCccccccCCceEEeCCCCCCC-CCCHHHHHHhhcCCCC--CCchhHHHHHHHH
Q 001068 170 DGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIE--SPHVYAITDTAIR 246 (1166)
Q Consensus 170 ~~v~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~ 246 (1166)
++||||+.|++|||++|||+|+.||.++.||||+|+||||||||+.+| +|+++++..|+++... |||||+||++||+
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~ 80 (674)
T cd01384 1 EGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYR 80 (674)
T ss_pred CCcchHhhCCCCCHHHHHHHHHHHHhcCCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999 9999999999988754 8999999999999
Q ss_pred HHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhccCCC-----CchhhhhhhhHHHHhhcCcccCCCCCCCccccEEEE
Q 001068 247 EMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS-----GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEI 321 (1166)
Q Consensus 247 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~-----~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l 321 (1166)
+|.++++||||||||||||||||++|++|+||+.++++. .|+++|+++||||||||||||++|+||||||||++|
T Consensus 81 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l 160 (674)
T cd01384 81 AMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 160 (674)
T ss_pred HHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEE
Confidence 999999999999999999999999999999999997642 689999999999999999999999999999999999
Q ss_pred EEcCCCceecceeeeeeccccccccccCCCCcchhHHHHhcCCCHHhHhhcCCCCccccccccCCCccCCCCcchHHHHH
Q 001068 322 HFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFR 401 (1166)
Q Consensus 322 ~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERnfHIFYqLl~g~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 401 (1166)
+||.+|.|+||+|++||||||||++|++||||||||||||+| +++++++|+|.++.+|+||++++|..++++||+++|+
T Consensus 161 ~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g-~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~ 239 (674)
T cd01384 161 QFDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAA-PPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYL 239 (674)
T ss_pred EECCCCcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcC-CHHHHHHcCCCChHhCccccCCCCccccccchHHHHH
Confidence 999999999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeeEEeCCCCccccCC---hhHHHHHHHHhCCCHHHHHHhHccceeeeC
Q 001068 402 IVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVA---DEGLITVAKLIGCDIGELKLALSTRKMRVG 478 (1166)
Q Consensus 402 ~~~~Al~~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~---~~~l~~aA~LLgv~~~~L~~~L~~~~i~~~ 478 (1166)
.++.||+.|||+++++..||+|||||||||||+|...++.+.+.+.+ .+.++.||.||||++++|.++|+++++.++
T Consensus 240 ~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~ 319 (674)
T cd01384 240 ATRRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTP 319 (674)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeC
Confidence 99999999999999999999999999999999998765444444433 588999999999999999999999999999
Q ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEEEeecccCcCCCCCChHHHHHhhhhhHHH
Q 001068 479 NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQ 558 (1166)
Q Consensus 479 ~e~~~~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ 558 (1166)
++.++++++++||.++||+|||+||++||+|||.+||.+|.+.. ....+||||||||||+|+.|||||||||||||+||
T Consensus 320 ~e~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ 398 (674)
T cd01384 320 EEVITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDP-DSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQ 398 (674)
T ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCeEEEEEecccccccCcCCHHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999998753 34689999999999999999999999999999999
Q ss_pred HhHhhhhhHHHHHHHHhcCCcccccccCCcHhHHHhhcC-CCccccccccccCCCCCChHHHHHHHHHHhCCCCCcccCC
Q 001068 559 QHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK-PLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER 637 (1166)
Q Consensus 559 ~~f~~~~F~~eq~ey~~EgI~~~~v~f~dn~~~ldLie~-p~Gll~lLDee~~~p~~td~~f~~kl~~~~~~~~~f~~~~ 637 (1166)
++||+++|+.||++|.+|||+|+.|+|.||++|||||++ |.|||++|||||++|++||.+|++||++++++|++|.+++
T Consensus 399 ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~ 478 (674)
T cd01384 399 QHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFEKPK 478 (674)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999999998764
Q ss_pred --CCCeEEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCCccHH
Q 001068 638 --DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVA 714 (1166)
Q Consensus 638 --~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~s~~~l-~~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~tv~ 714 (1166)
+..|+|+||||+|+|+++||++||+|.++++++++|++|++++ ..+|...... . +...+..||+
T Consensus 479 ~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~-~------------~~~~k~~tv~ 545 (674)
T cd01384 479 LSRTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEE-T------------SKSSKFSSIG 545 (674)
T ss_pred CCCCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhcccccc-c------------ccccccccHH
Confidence 5789999999999999999999999999999999999999885 5577543210 0 1123457999
Q ss_pred HHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHHHHHHhhhhccc
Q 001068 715 TKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLE 794 (1166)
Q Consensus 715 ~~fk~qL~~Lm~~L~~t~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~ 794 (1166)
++|+.||+.||++|++|+||||||||||+.+.|+.||.++|++||||+||||+|||+|+|||+|++|.+|+.||++|++.
T Consensus 546 ~~fk~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~~ 625 (674)
T cd01384 546 SRFKQQLQSLMETLSTTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAPE 625 (674)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccc-CCChHHHHHHHHHHcCcCCcceeecceeeeeeecccccccccccccc
Q 001068 795 SVA-SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTL 844 (1166)
Q Consensus 795 ~~~-~~d~~~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R~~~l 844 (1166)
..+ ..|++..|+.||..+++ +.|++|+||||||++++..||..|+..+
T Consensus 626 ~~~~~~~~~~~~~~il~~~~~--~~~~~GktkVFlr~~~~~~LE~~R~~~~ 674 (674)
T cd01384 626 VLKGSSDDKAACKKILDKMGL--KGYQIGKTKVFLRAGQMAELDARRTEVL 674 (674)
T ss_pred cccCCCcHHHHHHHHHHhCCC--CCEEecCeeEEEcCCHHHHHHHHHHhcC
Confidence 654 45788999999998765 5799999999999999999999998653
No 9
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=5.3e-183 Score=1671.54 Aligned_cols=655 Identities=45% Similarity=0.736 Sum_probs=619.4
Q ss_pred CccccccCCCCCchhHHHHHHHHhhcCccccccCCceEEeCCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHH
Q 001068 171 GVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREM 248 (1166)
Q Consensus 171 ~v~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m 248 (1166)
|||||+.|++|||++|||+|+.||.+|+||||+|++|||||||+++|+|+++++..|+++... |||||+||+.||+.|
T Consensus 1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~m 80 (674)
T cd01378 1 GVDDLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLPIYTDETIELYKGKSRYELPPHIYALADNAYRSM 80 (674)
T ss_pred CcchhhhCCCCCHHHHHHHHHHHHhcCCCeeccCCcEEEEcCCCCCCCCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999988764 899999999999999
Q ss_pred HHcCceEEEEEcCCCCCChhHHHHHHHHHHHhccCCC----CchhhhhhhhHHHHhhcCcccCCCCCCCccccEEEEEEc
Q 001068 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS----GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFS 324 (1166)
Q Consensus 249 ~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~----~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~F~ 324 (1166)
+.+++||||||||||||||||++|++|+||+.+++++ .++++|+++||||||||||||++|+||||||||++|+|+
T Consensus 81 ~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f~ 160 (674)
T cd01378 81 KSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQKVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQFD 160 (674)
T ss_pred HHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEEEC
Confidence 9999999999999999999999999999999998764 588999999999999999999999999999999999999
Q ss_pred CCCceecceeeeeeccccccccccCCCCcchhHHHHhcCCCHHhHhhcCCCCccccccccCCCccCCCCcchHHHHHHHH
Q 001068 325 ETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVV 404 (1166)
Q Consensus 325 ~~g~i~Ga~i~~yLLEKsRVv~q~~gERnfHIFYqLl~g~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~ 404 (1166)
.+|.|+||+|++||||||||+.|++||||||||||||+|+++++|++|+|.++.+|+||++++|+.++++||+++|+.++
T Consensus 161 ~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~ 240 (674)
T cd01378 161 FKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKETQ 240 (674)
T ss_pred CCCCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHhcCeeeEEeCCCCccccCChhHHHHHHHHhCCCHHHHHHhHccceeeeCC----c
Q 001068 405 EALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGN----D 480 (1166)
Q Consensus 405 ~Al~~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~i~~~~----e 480 (1166)
.||+.|||+++++..||+|||||||||||+|...++ +.+.+.+.+.++.||.||||++++|.++|+++++.+++ |
T Consensus 241 ~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~-~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~e 319 (674)
T cd01378 241 NAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGD-GAAVISDKDVLDFAAYLLGVDPSELEKALTSRTIETGGGGRGE 319 (674)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCC-CccccCChHHHHHHHHHcCCCHHHHHHHhcccEEEeCCCCCce
Confidence 999999999999999999999999999999987554 33778899999999999999999999999999999998 9
Q ss_pred eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEEEeecccCcCCCCCChHHHHHhhhhhHHHHh
Q 001068 481 TIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQH 560 (1166)
Q Consensus 481 ~~~~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~ 560 (1166)
.+++++|++||.++||+|||+||++||+|||.+||.+|.+.......+||||||||||+|+.|||||||||||||+||++
T Consensus 320 ~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~ 399 (674)
T cd01378 320 VYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNEKLQQI 399 (674)
T ss_pred eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999986445678999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHhcCCcccccccCCcHhHHHhhcC--CCccccccccccCCC-CCChHHHHHHHHHHhCCCCCcccC-
Q 001068 561 FNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK--PLGLLSLLDEESTFP-NGTDLTFANKLKQHLNSNPCFRGE- 636 (1166)
Q Consensus 561 f~~~~F~~eq~ey~~EgI~~~~v~f~dn~~~ldLie~--p~Gll~lLDee~~~p-~~td~~f~~kl~~~~~~~~~f~~~- 636 (1166)
||+|+|+.||++|.+|||+|+.|+|.||++|+|||++ |.|||++|||||++| ++||++|++||++++++|+++..+
T Consensus 400 f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~~~~~~~~~~~~~ 479 (674)
T cd01378 400 FIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSSHPHSDHFS 479 (674)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHHHhccCCCCCCCC
Confidence 9999999999999999999999999999999999996 899999999999999 999999999999999999986544
Q ss_pred -CCCCeEEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCCccHH
Q 001068 637 -RDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVA 714 (1166)
Q Consensus 637 -~~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~s~~~l-~~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~tv~ 714 (1166)
.+..|+|+||||+|+|+++||++||+|.++++++++|++|++++ ..+|....... ...+..||+
T Consensus 480 ~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~--------------~~~~~~tv~ 545 (674)
T cd01378 480 SGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSDAD--------------SKKRPTTAG 545 (674)
T ss_pred CCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhccccccc--------------ccCCCCcHH
Confidence 36799999999999999999999999999999999999999886 45675321100 012347999
Q ss_pred HHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHHHHHHhhhhccc
Q 001068 715 TKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLE 794 (1166)
Q Consensus 715 ~~fk~qL~~Lm~~L~~t~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~ 794 (1166)
++|+.||+.||++|++|+||||||||||+.+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|++||++|++.
T Consensus 546 ~~fk~qL~~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~~ 625 (674)
T cd01378 546 FKIKTSANALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSPK 625 (674)
T ss_pred HHHHHHHHHHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccc--CCChHHHHHHHHHHcCcCCcceeecceeeeeeec-ccccccccc
Q 001068 795 SVA--SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAG-QIGMLEDTR 840 (1166)
Q Consensus 795 ~~~--~~d~~~~~~~il~~~~~~~~~~~iGkTKVFlr~~-~~~~LE~~R 840 (1166)
... ..|++..|+.||..+++++++|++|+||||||++ ++..||+.|
T Consensus 626 ~~~~~~~~~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 626 TWPTWPGDAKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred cccccCCCHHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 543 4588999999999999999999999999999997 799999876
No 10
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=4.5e-182 Score=1661.59 Aligned_cols=666 Identities=41% Similarity=0.723 Sum_probs=616.4
Q ss_pred CCccccccCCCCCchhHHHHHHHHhhcCccccccCCceEEeCCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHH
Q 001068 170 DGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIRE 247 (1166)
Q Consensus 170 ~~v~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~ 247 (1166)
++||||+.|++|||++|||+|+.||.+|+||||+|++|||||||+.+|+|+++++..|+++... |||||+||+.||+.
T Consensus 1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~~ 80 (677)
T cd01387 1 DGVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFPIYGPEQVQQYAGRALGENPPHLFAIANLAFAK 80 (677)
T ss_pred CCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999999987654 89999999999999
Q ss_pred HHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhccCCC--CchhhhhhhhHHHHhhcCcccCCCCCCCccccEEEEEEcC
Q 001068 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS--GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSE 325 (1166)
Q Consensus 248 m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~--~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~F~~ 325 (1166)
|+.+++||||||||||||||||++|++|+||+.+++++ .++++|+++||||||||||||++||||||||||++|+|+
T Consensus 81 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~f~- 159 (677)
T cd01387 81 MLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGGSAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFLE- 159 (677)
T ss_pred HHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEEEec-
Confidence 99999999999999999999999999999999987543 689999999999999999999999999999999999995
Q ss_pred CCceecceeeeeeccccccccccCCCCcchhHHHHhcCCCHHhHhhcCCCCccccccccCCCccCCCCcchHHHHHHHHH
Q 001068 326 TGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVE 405 (1166)
Q Consensus 326 ~g~i~Ga~i~~yLLEKsRVv~q~~gERnfHIFYqLl~g~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~ 405 (1166)
+|.|+||+|++||||||||++|++||||||||||||+|+++++|++|+|.++.+|+||++++|..+++++|+++|+.++.
T Consensus 160 ~g~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~ 239 (677)
T cd01387 160 GGVIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFRRLLA 239 (677)
T ss_pred CCcEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHhcCeeeEEeCC--CCccccCChhHHHHHHHHhCCCHHHHHHhHccceeeeCCceEE
Q 001068 406 ALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN--ENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIV 483 (1166)
Q Consensus 406 Al~~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~--~~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~i~~~~e~~~ 483 (1166)
||+.|||+++++..||+|||||||||||+|...++ .+.+++.+.+.++.||.||||++++|.++|+++++.+++|.+.
T Consensus 240 al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~ 319 (677)
T cd01387 240 AMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVSAREIQAVAELLQISPEGLQKAITFKVTETRREKIF 319 (677)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeCCceEe
Confidence 99999999999999999999999999999987543 2357788899999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEEEeecccCcCCCCCChHHHHHhhhhhHHHHhHhh
Q 001068 484 QNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNR 563 (1166)
Q Consensus 484 ~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~ 563 (1166)
++++++||.++||+|||+||++||+|||.+||.+|.+. ....+||||||||||+|+.|||||||||||||+||++||+
T Consensus 320 ~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~--~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~ 397 (677)
T cd01387 320 TPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT--QDTLSIAILDIYGFEDLSFNSFEQLCINYANENLQYLFNK 397 (677)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCceEEEEecCccccCCCCCHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999873 3467999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhcCCcccccccCCcHhHHHhhcC-CCccccccccccCCCCCChHHHHHHHHHHhCCCCCcccCC--CCC
Q 001068 564 HLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK-PLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER--DKS 640 (1166)
Q Consensus 564 ~~F~~eq~ey~~EgI~~~~v~f~dn~~~ldLie~-p~Gll~lLDee~~~p~~td~~f~~kl~~~~~~~~~f~~~~--~~~ 640 (1166)
++|+.||++|.+|||+|+.|+|.||++|||||++ |.|||+||||||++|++||.+|++|++.++++|++|.+++ ...
T Consensus 398 ~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~~~~~~~ 477 (677)
T cd01387 398 IVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCHYHHGANPLYSKPKMPLPE 477 (677)
T ss_pred HHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHHHhccCCccccCCCCCCCe
Confidence 9999999999999999999999999999999997 9999999999999999999999999999999999998765 468
Q ss_pred eEEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcchh-HHhhccccccCCCCccCCCccCCCCCCCCccHHHHHHH
Q 001068 641 FTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKG 719 (1166)
Q Consensus 641 F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~s~~~l~-~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~tv~~~fk~ 719 (1166)
|+|+||||+|+|+++||++||+|.++++++++|.+|+++++ .+|.......+.+. .+...+++...+..||+++|+.
T Consensus 478 F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~--~~~~s~~~~~~~~~tv~~~f~~ 555 (677)
T cd01387 478 FTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKR--LGKSSSGTRLYKAHTVAAKFQQ 555 (677)
T ss_pred eEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhccccccc--ccCCCccccccCCCcHHHHHHH
Confidence 99999999999999999999999999999999999998864 56654321111100 0001111123346799999999
Q ss_pred HHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHHHHHHhhhhccccccCC
Q 001068 720 QLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQ 799 (1166)
Q Consensus 720 qL~~Lm~~L~~t~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~ 799 (1166)
||+.||++|++|+||||||||||+.+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|+.||++|++......
T Consensus 556 sL~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~ 635 (677)
T cd01387 556 SLLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDRYRCLVALKLARP 635 (677)
T ss_pred HHHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHHHHHhCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999765444
Q ss_pred ChHHH-HHHHHHHcCcCCcceeecceeeeeeecccccccccc
Q 001068 800 DPLSV-SVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 840 (1166)
Q Consensus 800 d~~~~-~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 840 (1166)
++.+. +..++..++++++.|++|+||||||++++..||..|
T Consensus 636 ~~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 636 APGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred CcHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 44444 478888899999999999999999999999999876
No 11
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=1.3e-181 Score=1660.92 Aligned_cols=667 Identities=40% Similarity=0.677 Sum_probs=617.4
Q ss_pred cCCccccccCCCCCchhHHHHHHHHhhcCccccccCCceEEeCCCCCCCCCCHHHHHHhhcCC-C--CCCchhHHHHHHH
Q 001068 169 LDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKS-I--ESPHVYAITDTAI 245 (1166)
Q Consensus 169 ~~~v~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~y~~~~-~--~~PHiyavA~~Ay 245 (1166)
.+++|||+.|++|||++|||+|+.||.+++||||+|++|||||||+++|+|+++++..|+++. . .|||||+||++||
T Consensus 6 ~~~~~Dl~~L~~lnE~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~Ay 85 (692)
T cd01385 6 QREYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLPIYNPKYVRLYENQQRLGKLPPHIFAIADVAY 85 (692)
T ss_pred cCCCChhhhCCCCCHHHHHHHHHHHHhcCCCeEeECCEEEEECCCcCCCCCCHHHHHHHhcCCCcCCCCCCHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999999999999999998876 2 3899999999999
Q ss_pred HHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhccCC----CCchhhhhhhhHHHHhhcCcccCCCCCCCccccEEEE
Q 001068 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG----SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEI 321 (1166)
Q Consensus 246 ~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~----~~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l 321 (1166)
+.|+.+++||||||||||||||||++|++|+||+.+++. ++++++|+++||||||||||||++|+||||||||++|
T Consensus 86 ~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~~~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~l 165 (692)
T cd01385 86 YNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQKGYAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQV 165 (692)
T ss_pred HHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEE
Confidence 999999999999999999999999999999999998752 3799999999999999999999999999999999999
Q ss_pred EEcCCCceecceeeeeeccccccccccCCCCcchhHHHHhcCCCHHhHhhcCCCCccccccccCCCccCCCCcchHHHHH
Q 001068 322 HFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFR 401 (1166)
Q Consensus 322 ~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERnfHIFYqLl~g~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 401 (1166)
+|+.+|.|+||+|++||||||||++|++||||||||||||+|+++++|++++|.++.+|+||++++|...+++||+.+|.
T Consensus 166 ~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~f~ 245 (692)
T cd01385 166 NYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHEFE 245 (692)
T ss_pred EECCCCCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888899999999887778999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeeEEeCC---CCccccCChhHHHHHHHHhCCCHHHHHHhHccceeeeC
Q 001068 402 IVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN---ENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVG 478 (1166)
Q Consensus 402 ~~~~Al~~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~---~~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~i~~~ 478 (1166)
.++.||+.|||+++++..||+|||||||||||+|...++ ++.+.+.+.+.+..||.||||++++|.++|+++++.++
T Consensus 246 ~~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~ 325 (692)
T cd01385 246 RLKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGNPEVVDLLSQLLKVKRETLMEALTKKRTVTV 325 (692)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeC
Confidence 999999999999999999999999999999999987532 45678889999999999999999999999999999999
Q ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC--CCcceEEEeecccCcCCCC-CChHHHHHhhhhh
Q 001068 479 NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKR--RTGRSISILDIYGFESFDR-NSFEQFCINYANE 555 (1166)
Q Consensus 479 ~e~~~~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~--~~~~~IgILDi~GFE~f~~-NsfEQLcINyaNE 555 (1166)
||.++++++++||.++||+|||+||++||+|||++||.+|.+... ....+||||||||||+|+. |||||||||||||
T Consensus 326 ~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQLcINyaNE 405 (692)
T cd01385 326 NETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCINYANE 405 (692)
T ss_pred CCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999986432 2467999999999999999 9999999999999
Q ss_pred HHHHhHhhhhhHHHHHHHHhcCCcccccccCCcHhHHHhhcC-CCccccccccccCCCCCChHHHHHHHHHHhCCCCCcc
Q 001068 556 RLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK-PLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFR 634 (1166)
Q Consensus 556 kLQ~~f~~~~F~~eq~ey~~EgI~~~~v~f~dn~~~ldLie~-p~Gll~lLDee~~~p~~td~~f~~kl~~~~~~~~~f~ 634 (1166)
+||++||+++|+.||++|.+|||+|+.|+|.||++|||||++ |.|||++|||||++|++||.+|++|+++++++|++|.
T Consensus 406 kLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~~~~~~~~~~~ 485 (692)
T cd01385 406 QLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFNQQHKDNKYYE 485 (692)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhCCCCCcc
Confidence 999999999999999999999999999999999999999997 8999999999999999999999999999999999997
Q ss_pred cCC--CCCeEEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCCc
Q 001068 635 GER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKL 711 (1166)
Q Consensus 635 ~~~--~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~s~~~l-~~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~ 711 (1166)
+++ ...|+|+||||+|+|+++||++||+|.|+++++++|++|++++ ..+|.......... +..++........
T Consensus 486 ~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~----~~~~~~~~~~~~~ 561 (692)
T cd01385 486 GPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVFRW----AVLRAAFRAMAAP 561 (692)
T ss_pred CCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCccccccc----ccccccccCccCC
Confidence 653 5689999999999999999999999999999999999999986 45775322110000 0011111122347
Q ss_pred cHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHHHHHHhhhh
Q 001068 712 SVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFL 791 (1166)
Q Consensus 712 tv~~~fk~qL~~Lm~~L~~t~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L 791 (1166)
||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|.|||+|++|.+|++||++|
T Consensus 562 tV~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~~F~~rY~~L 641 (692)
T cd01385 562 SVSAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQDFTQQYRIL 641 (692)
T ss_pred cHHHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCChHHHHHHHHHHcCcCCcceeecceeeeeeeccccccccccc
Q 001068 792 LLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRN 841 (1166)
Q Consensus 792 ~~~~~~~~d~~~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R~ 841 (1166)
+|.... +.++.|+.||..+++++.+|++|+||||||++++..||+...
T Consensus 642 ~~~~~~--~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~~ 689 (692)
T cd01385 642 LPKGAQ--SCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETLH 689 (692)
T ss_pred Cccccc--chHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHHh
Confidence 986532 345679999999999999999999999999999999987644
No 12
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=2.1e-180 Score=1655.72 Aligned_cols=662 Identities=39% Similarity=0.661 Sum_probs=612.9
Q ss_pred cCCccccccCCCCCchhHHHHHHHHhhcCccccccCCceEEeCCCCCCC-CCCHHHHHHhhcCCCC--CCchhHHHHHHH
Q 001068 169 LDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIE--SPHVYAITDTAI 245 (1166)
Q Consensus 169 ~~~v~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-iY~~~~~~~y~~~~~~--~PHiyavA~~Ay 245 (1166)
.++||||+.|++|||++|||+|+.||.++.||||+|++|||||||+.+| +|+++++..|+++... |||||+||+.||
T Consensus 3 ~~~v~Dl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay 82 (717)
T cd01382 3 KKDVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKAY 82 (717)
T ss_pred CCCcchhhcCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999998 9999999999988754 799999999999
Q ss_pred HHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhccCC-CCchhhhhhhhHHHHhhcCcccCCCCCCCccccEEEEEEc
Q 001068 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG-SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFS 324 (1166)
Q Consensus 246 ~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~-~~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~F~ 324 (1166)
+.|+.+++||||||||||||||||++|++|+||+.++++ ..|+++|+++||||||||||||++|+||||||||++|+||
T Consensus 83 ~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~ 162 (717)
T cd01382 83 RDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFN 162 (717)
T ss_pred HHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHhhccccCCCCCcccceeEEEEEEC
Confidence 999999999999999999999999999999999998764 4899999999999999999999999999999999999999
Q ss_pred CCCceecceeeeeeccccccccccCCCCcchhHHHHhcCCCHHhHhhcCCCCccccccccCCC-----------------
Q 001068 325 ETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSS----------------- 387 (1166)
Q Consensus 325 ~~g~i~Ga~i~~yLLEKsRVv~q~~gERnfHIFYqLl~g~~~~~r~~l~L~~~~~y~yL~~~~----------------- 387 (1166)
.+|+|+||+|++||||||||+.|++||||||||||||+|+++++|+.|+|.++.+|+||+++.
T Consensus 163 ~~g~i~Ga~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~~~~~~ 242 (717)
T cd01382 163 EKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQILQNR 242 (717)
T ss_pred CCCCEeEEEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCcccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999752
Q ss_pred ---------ccCCCCcchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeeEEeCCC-Ccc--ccCChhHHHHH
Q 001068 388 ---------CYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNE-NHV--EPVADEGLITV 455 (1166)
Q Consensus 388 ---------~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~~-~~~--~~~~~~~l~~a 455 (1166)
|..++++||+++|+.++.||++|||+++++..||+|||||||||||+|...+.. +.+ ...+.+.++.|
T Consensus 243 ~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~ 322 (717)
T cd01382 243 KSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKNQSEQSLEYC 322 (717)
T ss_pred cccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecCCCHHHHHHH
Confidence 234578999999999999999999999999999999999999999999875432 223 34567899999
Q ss_pred HHHhCCCHHHHHHhHccceee-----eCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEE
Q 001068 456 AKLIGCDIGELKLALSTRKMR-----VGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSIS 530 (1166)
Q Consensus 456 A~LLgv~~~~L~~~L~~~~i~-----~~~e~~~~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~Ig 530 (1166)
|.||||++++|.++|+++++. ++++.+.++++++||.++||+|||+||++||+|||.+||.+|.... ...+||
T Consensus 323 a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~--~~~~Ig 400 (717)
T cd01382 323 AELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFET--SSNFIG 400 (717)
T ss_pred HHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCcEEE
Confidence 999999999999999999998 7889999999999999999999999999999999999999997643 467999
Q ss_pred EeecccCcCCCCCChHHHHHhhhhhHHHHhHhhhhhHHHHHHHHhcCCcccccccCCcHhHHHhhcC-CCcccccccccc
Q 001068 531 ILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK-PLGLLSLLDEES 609 (1166)
Q Consensus 531 ILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~ey~~EgI~~~~v~f~dn~~~ldLie~-p~Gll~lLDee~ 609 (1166)
||||||||+|+.|||||||||||||+||++||+++|..||++|.+|||+|+.|+|.||++||||||+ |.|||++|||||
T Consensus 401 iLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~ 480 (717)
T cd01382 401 VLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEEN 480 (717)
T ss_pred EEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 899999999999
Q ss_pred CCCCCChHHHHHHHHHHhCCCCCcccCC------------CCCeEEEeecceeeecccchhhhccCcCcHHHHHHHhhcC
Q 001068 610 TFPNGTDLTFANKLKQHLNSNPCFRGER------------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCS 677 (1166)
Q Consensus 610 ~~p~~td~~f~~kl~~~~~~~~~f~~~~------------~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~s~ 677 (1166)
++|++||.+|++||++.+++|++|..++ +..|+|+||||+|+|+++||++||+|.|+++++++|++|+
T Consensus 481 ~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~ll~~S~ 560 (717)
T cd01382 481 RLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESK 560 (717)
T ss_pred cCCCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHHHHhCc
Confidence 9999999999999999999888775432 2479999999999999999999999999999999999999
Q ss_pred cchh-HHhhccccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhh
Q 001068 678 CHLP-QIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVL 756 (1166)
Q Consensus 678 ~~l~-~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~Lm~~L~~t~phfIrCIkPN~~k~p~~fd~~~V~ 756 (1166)
+++. .+|........ ...+....+..||+++||.||+.||++|++|+||||||||||..+.|+.||.++|+
T Consensus 561 n~~i~~lf~~~~~~~~--------~~~~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~ 632 (717)
T cd01382 561 DKFLRSLFESSTNNND--------TKQKAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQIL 632 (717)
T ss_pred hHHHHHHhcccccccc--------ccccccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHH
Confidence 8864 56754321100 00011123457999999999999999999999999999999999999999999999
Q ss_pred HhhhccChhHHHHHhhcCCCCccChHHHHHHhhhhccccccCCChHHHHHHHHHHcCcCCcceeecceeeeeeecccccc
Q 001068 757 QQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGML 836 (1166)
Q Consensus 757 ~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~~~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~L 836 (1166)
+||||+||||+|||+|.|||+|++|.+|++||++|++......|++..|++||+.+++++++|++|+||||||+++++.|
T Consensus 633 ~QLr~~GvLE~vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~l 712 (717)
T cd01382 633 SQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMPPKLVRLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEF 712 (717)
T ss_pred HHHHhcchHHHHHHHHccCchhhhHHHHHHHHHHhCCcccCCCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHH
Confidence 99999999999999999999999999999999999987776778999999999999999999999999999999999999
Q ss_pred cccc
Q 001068 837 EDTR 840 (1166)
Q Consensus 837 E~~R 840 (1166)
|...
T Consensus 713 e~~~ 716 (717)
T cd01382 713 DQIM 716 (717)
T ss_pred HHHh
Confidence 8753
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=4e-178 Score=1635.52 Aligned_cols=663 Identities=53% Similarity=0.869 Sum_probs=627.1
Q ss_pred CCCccCCccccccCCCCCchhHHHHHHHHhhcCccccccCCceEEeCCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHH
Q 001068 165 NPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITD 242 (1166)
Q Consensus 165 np~~~~~v~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~ 242 (1166)
||+..++++||+.|++|||++||++|+.||.+++||||+|++|||||||+++|+|+++++..|+++... |||||+||+
T Consensus 1 np~~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~y~~~~~~~y~~~~~~~~~PHifavA~ 80 (677)
T smart00242 1 NPPKFEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLPIYTDEVIKKYRGKSRGELPPHVFAIAD 80 (677)
T ss_pred CCcccCCcchhhcCCCCCHHHHHHHHHHHHhhCCccccccceEEEecCCccCCCCCHHHHHHccCCCCCCCCCCHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999988654 899999999
Q ss_pred HHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhccCCC----CchhhhhhhhHHHHhhcCcccCCCCCCCccccE
Q 001068 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS----GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKL 318 (1166)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~----~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~ 318 (1166)
+||+.|+.+++||||||||||||||||++|++|+||+.++++. +|+++|+++||||||||||||++|+||||||||
T Consensus 81 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~ 160 (677)
T smart00242 81 NAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNTSVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKF 160 (677)
T ss_pred HHHHHHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCCccccHHHHHHHHHHHHHHhhccccCCCCCccchhee
Confidence 9999999999999999999999999999999999999998653 799999999999999999999999999999999
Q ss_pred EEEEEcCCCceecceeeeeeccccccccccCCCCcchhHHHHhcCCCHHhHhhcCCCCccccccccCCCccCCCCcchHH
Q 001068 319 IEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAE 398 (1166)
Q Consensus 319 i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERnfHIFYqLl~g~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~ 398 (1166)
++|+|+.+|.|+||+|++||||||||+.|++||||||||||||+|++++++++|+|.++.+|+||++++|..++++||++
T Consensus 161 ~~l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~ 240 (677)
T smart00242 161 IEIHFDAKGKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAE 240 (677)
T ss_pred EEEEECCCCcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeeEEeCCCCc-cccCChhHHHHHHHHhCCCHHHHHHhHccceeee
Q 001068 399 QFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENH-VEPVADEGLITVAKLIGCDIGELKLALSTRKMRV 477 (1166)
Q Consensus 399 ~f~~~~~Al~~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~~~~-~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~i~~ 477 (1166)
+|+.++.||+.|||+++++..||+|||||||||||+|...++++. ..+.+.+.++.||.||||++++|.++|+++++.+
T Consensus 241 ~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 320 (677)
T smart00242 241 EFKETLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVKDKEELENAAELLGVDPEELEKALTKRKIKT 320 (677)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEe
Confidence 999999999999999999999999999999999999987664332 3478889999999999999999999999999999
Q ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEEEeecccCcCCCCCChHHHHHhhhhhHH
Q 001068 478 GNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERL 557 (1166)
Q Consensus 478 ~~e~~~~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkL 557 (1166)
++|.+++++++++|.++||+|||+||++||+|||.+||.+|.+.. ....+||||||||||+|..|||||||||||||+|
T Consensus 321 ~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~-~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkL 399 (677)
T smart00242 321 GGEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKD-GSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKL 399 (677)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCceEEEEEecccccccccCCHHHHHhHhhHHHH
Confidence 999999999999999999999999999999999999999998753 4568999999999999999999999999999999
Q ss_pred HHhHhhhhhHHHHHHHHhcCCcccccccCCcHhHHHhhcC-CCccccccccccCCCCCChHHHHHHHHHHhCCCCCcccC
Q 001068 558 QQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK-PLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGE 636 (1166)
Q Consensus 558 Q~~f~~~~F~~eq~ey~~EgI~~~~v~f~dn~~~ldLie~-p~Gll~lLDee~~~p~~td~~f~~kl~~~~~~~~~f~~~ 636 (1166)
|++||+++|+.||++|.+|||+|+.|+|.||++|||||++ |.|||++|||||++|++||.+|++||++++++|++|.++
T Consensus 400 q~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~~~~~~~~~~~~~ 479 (677)
T smart00242 400 QQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLNQTHEKHPHFSKP 479 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCccCC
Confidence 9999999999999999999999999999999999999998 899999999999999999999999999999999999875
Q ss_pred C---CCCeEEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCCcc
Q 001068 637 R---DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKLS 712 (1166)
Q Consensus 637 ~---~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~s~~~l-~~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~t 712 (1166)
+ +..|+|+||||+|+|+++||++||+|.++++++++|++|++++ ..+|...... .+...+..|
T Consensus 480 ~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~-------------~~~~~~~~t 546 (677)
T smart00242 480 RKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESN-------------AGSKKRFRT 546 (677)
T ss_pred CCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhcccccc-------------ccccCCCCc
Confidence 3 5789999999999999999999999999999999999999886 4567543211 011234579
Q ss_pred HHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHHHHHHhhhhc
Q 001068 713 VATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLL 792 (1166)
Q Consensus 713 v~~~fk~qL~~Lm~~L~~t~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~ 792 (1166)
|+++|+.||+.||++|++|+||||||||||+.+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|+.||++|+
T Consensus 547 v~~~fk~~L~~L~~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry~~L~ 626 (677)
T smart00242 547 VGSQFKESLNKLMDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRYRVLL 626 (677)
T ss_pred HHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC--CChHHHHHHHHHHcCcCCcceeecceeeeeeeccccccccccc
Q 001068 793 LESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRN 841 (1166)
Q Consensus 793 ~~~~~~--~d~~~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R~ 841 (1166)
+...+. .|+++.|+.||..+++++.+|++|+||||||++++..||+.|+
T Consensus 627 ~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 627 PDTWPPWGGDAKEACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred cccccccCCCHHHHHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 976543 4689999999999999999999999999999999999999874
No 14
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=8.2e-179 Score=1521.74 Aligned_cols=743 Identities=37% Similarity=0.623 Sum_probs=677.5
Q ss_pred cCCccccccCCCCCchhHHHHHHHHhhcCccccccCCceEEeCCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHH
Q 001068 169 LDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIR 246 (1166)
Q Consensus 169 ~~~v~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~ 246 (1166)
--||+|++-|+.++|++++.||+.||.++.||||+|++||+||||+.++||++++|+.|++...- |||+||||+.||+
T Consensus 7 ~~Gv~DfVLle~~~~~~f~~NLrlRf~~g~IYTyIGeV~VsvNPYrql~IYg~~ti~kYkgre~yE~~PHlfAiad~aYr 86 (1001)
T KOG0164|consen 7 EVGVQDFVLLETVSEESFMENLRLRFENGRIYTYIGEVLVSVNPYRQLNIYGPETIEKYKGREFYERPPHLFAIADAAYR 86 (1001)
T ss_pred ccCceeeEeeccccHHHHHHHHHHHHhcCceEEEEccEEEEecchhhcCccCHHHHHHhCCeeecccCchHHHhHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999998754 8999999999999
Q ss_pred HHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhccCCC------CchhhhhhhhHHHHhhcCcccCCCCCCCccccEEE
Q 001068 247 EMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS------GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIE 320 (1166)
Q Consensus 247 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~------~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~ 320 (1166)
.|.+..+||||+|||||||||||++|+||+|+|++.+.+ .+.+.+|+|||||||||||||.||||||||||||.
T Consensus 87 slk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYMD 166 (1001)
T KOG0164|consen 87 SLKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYMD 166 (1001)
T ss_pred HHHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhccee
Confidence 999999999999999999999999999999999997654 35678899999999999999999999999999999
Q ss_pred EEEcCCCceecceeeeeeccccccccccCCCCcchhHHHHhcCCCHHhHhhcCC-CCccccccccCCCccCCCCcchHHH
Q 001068 321 IHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNL-MSAKEYKYLRQSSCYSINGVDDAEQ 399 (1166)
Q Consensus 321 l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERnfHIFYqLl~g~~~~~r~~l~L-~~~~~y~yL~~~~~~~~~~~dD~~~ 399 (1166)
|.||-+|..+|+.|..|||||||||.|.+||||||||||||.|+++.+...|+| +++..|.||+++ |..+.+++|+.+
T Consensus 167 InFDfKGdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg-~~~v~sinD~~d 245 (1001)
T KOG0164|consen 167 INFDFKGDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQG-SAKVSSINDASD 245 (1001)
T ss_pred eeccccCCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhh-hhhhcccccHHH
Confidence 999999999999999999999999999999999999999999999999999999 579999999998 788999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeeEEeCCCCccccCChhHHHHHHHHhCCCHHHHHHhHccceeeeCC
Q 001068 400 FRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGN 479 (1166)
Q Consensus 400 f~~~~~Al~~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~i~~~~ 479 (1166)
|+.+.+||.+|||+++|++++|+|+|||||||||.|...++ ..-+++...+..+|+||++.+++|.++|++|+|.+++
T Consensus 246 fk~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~ed--~~~~~~~~~l~~~aell~v~~del~~aL~~Rtvaa~~ 323 (1001)
T KOG0164|consen 246 FKAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNED--SSGIVNGAQLKYIAELLSVTGDELERALTSRTVAAGG 323 (1001)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecCc--ccccchhHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999986543 3334455889999999999999999999999999999
Q ss_pred ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC----CCcceEEEeecccCcCCCCCChHHHHHhhhhh
Q 001068 480 DTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKR----RTGRSISILDIYGFESFDRNSFEQFCINYANE 555 (1166)
Q Consensus 480 e~~~~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~----~~~~~IgILDi~GFE~f~~NsfEQLcINyaNE 555 (1166)
|.+.+++|++||..+||||||+||+|||+|||.+||.+|..... ....-||+|||||||+|+.|||||||||||||
T Consensus 324 e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcINYCNE 403 (1001)
T KOG0164|consen 324 EIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCINYCNE 403 (1001)
T ss_pred chhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987532 22367999999999999999999999999999
Q ss_pred HHHHhHhhhhhHHHHHHHHhcCCcccccccCCcHhHHHhhcC-CCccccccccccCCCC-CChHHHHHHHHHHhCCCCCc
Q 001068 556 RLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK-PLGLLSLLDEESTFPN-GTDLTFANKLKQHLNSNPCF 633 (1166)
Q Consensus 556 kLQ~~f~~~~F~~eq~ey~~EgI~~~~v~f~dn~~~ldLie~-p~Gll~lLDee~~~p~-~td~~f~~kl~~~~~~~~~f 633 (1166)
||||.|++-+++.|||||++|||+|++|+|.+|+-++||+|. ..||++||||||+.|+ .||.+|+++|.+++++|++|
T Consensus 404 KLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~~~~H~Hy 483 (1001)
T KOG0164|consen 404 KLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQKLKKHPHY 483 (1001)
T ss_pred HHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHHhhhCCcc
Confidence 999999999999999999999999999999999999999999 6899999999999985 69999999999999999999
Q ss_pred ccCC---------CCCeEEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccC
Q 001068 634 RGER---------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKA 703 (1166)
Q Consensus 634 ~~~~---------~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~s~~~l-~~lf~~~~~~~s~~~~~~~~~~~ 703 (1166)
.+.. -.+|.|.||||+|+|++.||++||+|.|-.|+-.+|.+|++++ ..+|.... +....
T Consensus 484 ~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~fpeG~------~~~~~---- 553 (1001)
T KOG0164|consen 484 TSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSLFPEGN------PDIAE---- 553 (1001)
T ss_pred hhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHhCCCCC------hhHHh----
Confidence 6421 2589999999999999999999999999999999999999885 56774321 10000
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHH
Q 001068 704 GGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQK 783 (1166)
Q Consensus 704 ~~~~~~~~tv~~~fk~qL~~Lm~~L~~t~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~e 783 (1166)
...+..|++++|+.++..||.+|.+-+|+||||||||+.|.|+.||...|.+|.+|+|+||-+|++|+||.+|.+|+.
T Consensus 554 --~tkRP~Tagt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~~ 631 (1001)
T KOG0164|consen 554 --VTKRPPTAGTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYER 631 (1001)
T ss_pred --hhcCCCcHHHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchHH
Confidence 012347999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccccccC---CChHHHHHHHHHHcCcCCcceeecceeeeeeec-ccccccccccccccch-hhhhhhhcccc
Q 001068 784 FARRYGFLLLESVAS---QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAG-QIGMLEDTRNRTLHGI-LRVQSCFRGHQ 858 (1166)
Q Consensus 784 F~~RY~~L~~~~~~~---~d~~~~~~~il~~~~~~~~~~~iGkTKVFlr~~-~~~~LE~~R~~~l~aa-v~IQa~~Rg~~ 858 (1166)
|+.||+++++.+++. .+.++.|..+++..++. +++++|+||||+|++ .+..||+.|..++..+ +.||+.||||+
T Consensus 632 FL~RYKmi~~~TWPn~~~g~dkd~v~vL~e~~g~~-~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~ 710 (1001)
T KOG0164|consen 632 FLLRYKMICESTWPNWRGGSDKDGVKVLLEHLGLA-GDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWL 710 (1001)
T ss_pred HHHHHHhhCcccCCCCCCCCchhHHHHHHHHhccc-hhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999884 35678899999999887 789999999999986 5889999999988875 58999999999
Q ss_pred cchhhhccchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch----------hhHHHHHHHHhh
Q 001068 859 ARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIK----------YSSIMIQSVIRG 928 (1166)
Q Consensus 859 aRr~y~~lr~aai~IQs~~RG~~aRr~y~~l~~r~~AAi~IQ~~~R~~~aRk~~~~~r----------~aai~IQs~~Rg 928 (1166)
+|.+|++|+.+++.|+ +||.+.. ..++..||+.+|++..++.|.+.. .+.-.+|..+-.
T Consensus 711 ~R~ry~rmka~~~ii~-wyR~~K~----------ks~v~el~~~~rg~k~~r~ygk~~~WP~pP~~Lr~~~~~L~~lf~r 779 (1001)
T KOG0164|consen 711 ARQRYRRMKASATIIR-WYRRYKL----------KSYVQELQRRFRGAKQMRDYGKSIRWPAPPLVLREFEELLRELFIR 779 (1001)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHH----------HHHHHHHHHHHHhhhhccccCCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 9999999999999999 7773322 245677899999999999887653 355567777777
Q ss_pred HHHHHHHHHh
Q 001068 929 WLVRRCSGDI 938 (1166)
Q Consensus 929 ~laRr~~~~l 938 (1166)
|.+++....+
T Consensus 780 wra~~~~~~i 789 (1001)
T KOG0164|consen 780 WRAWQILKSI 789 (1001)
T ss_pred HHHHHHHHhC
Confidence 8777766554
No 15
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=1.6e-177 Score=1613.45 Aligned_cols=633 Identities=39% Similarity=0.683 Sum_probs=594.7
Q ss_pred CccccccCCCCCchhHHHHHHHHhhcCccccccCCceEEeCCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHH
Q 001068 171 GVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREM 248 (1166)
Q Consensus 171 ~v~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m 248 (1166)
.+|||+.|++|||++|||+|+.||.++.||||+|++|||||||+.+|+|+++++..|+++... |||||+||+.||+.|
T Consensus 1 ~~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m 80 (653)
T cd01379 1 DMDDLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLGLYTTQHSRLYTGQKRSSNPPHIFAIADAAYQSL 80 (653)
T ss_pred CcchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999887544 899999999999999
Q ss_pred HHcCceEEEEEcCCCCCChhHHHHHHHHHHHhccCCC--CchhhhhhhhHHHHhhcCcccCCCCCCCccccEEEEEEcCC
Q 001068 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS--GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSET 326 (1166)
Q Consensus 249 ~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~--~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~F~~~ 326 (1166)
+..++||||||||||||||||++|++|+||+.++++. .++++|+++||||||||||||++||||||||||++|+|+.+
T Consensus 81 ~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~f~~~ 160 (653)
T cd01379 81 VTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKANNRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFTRS 160 (653)
T ss_pred HhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEEECCC
Confidence 9999999999999999999999999999999987643 79999999999999999999999999999999999999999
Q ss_pred CceecceeeeeeccccccccccCCCCcchhHHHHhcCCCHHhH-hhcCCCCccccccccCCCccCCCCcc----hHHHHH
Q 001068 327 GKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALR-EKLNLMSAKEYKYLRQSSCYSINGVD----DAEQFR 401 (1166)
Q Consensus 327 g~i~Ga~i~~yLLEKsRVv~q~~gERnfHIFYqLl~g~~~~~r-~~l~L~~~~~y~yL~~~~~~~~~~~d----D~~~f~ 401 (1166)
|.|+||+|++||||||||++|++||||||||||||+|++++++ +.|+|.++.+|+||++++|..+++++ |+++|+
T Consensus 161 g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~~~f~ 240 (653)
T cd01379 161 GAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYKDQFE 240 (653)
T ss_pred CcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHHHHHH
Confidence 9999999999999999999999999999999999999998776 78999998999999999887666664 578999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeeEEeCC---CCccccCChhHHHHHHHHhCCCHHHHHHhHccceeeeC
Q 001068 402 IVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN---ENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVG 478 (1166)
Q Consensus 402 ~~~~Al~~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~---~~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~i~~~ 478 (1166)
.++.||.+|||+++++..||+|||||||||||+|...++ .+.+.+.+.+.++.||.||||+.++|.++|+++++.++
T Consensus 241 ~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~~~~~l~~~A~LLgv~~~~L~~~L~~~~~~~~ 320 (653)
T cd01379 241 QIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVSNVAALENAASLLCIRSDELQEALTSHCVVTR 320 (653)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEeC
Confidence 999999999999999999999999999999999987543 24577889999999999999999999999999999999
Q ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC----CCcceEEEeecccCcCCCCCChHHHHHhhhh
Q 001068 479 NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKR----RTGRSISILDIYGFESFDRNSFEQFCINYAN 554 (1166)
Q Consensus 479 ~e~~~~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~----~~~~~IgILDi~GFE~f~~NsfEQLcINyaN 554 (1166)
|+.++++++++||.++||||||+||++||+|||.+||.+|.+... ....+||||||||||+|+.||||||||||||
T Consensus 321 ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaN 400 (653)
T cd01379 321 GETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQLCINIAN 400 (653)
T ss_pred CceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHHHHhhhhH
Confidence 999999999999999999999999999999999999999987532 2457999999999999999999999999999
Q ss_pred hHHHHhHhhhhhHHHHHHHHhcCCcccccccCCcHhHHHhhcC-CCccccccccccCCCCCChHHHHHHHHHHhCCCCCc
Q 001068 555 ERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK-PLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCF 633 (1166)
Q Consensus 555 EkLQ~~f~~~~F~~eq~ey~~EgI~~~~v~f~dn~~~ldLie~-p~Gll~lLDee~~~p~~td~~f~~kl~~~~~~~~~f 633 (1166)
|+||++||+++|+.||++|.+|||+|+.|+|.||++|||||++ |.|||++|||||++|+|||.+|++|++.++++ +.|
T Consensus 401 EkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~~~~~~-~~~ 479 (653)
T cd01379 401 EQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFEDNLKS-KFF 479 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHHHhcCC-CCc
Confidence 9999999999999999999999999999999999999999976 99999999999999999999999999998864 455
Q ss_pred ccCC--CCCeEEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcchhHHhhccccccCCCCccCCCccCCCCCCCCc
Q 001068 634 RGER--DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKL 711 (1166)
Q Consensus 634 ~~~~--~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~s~~~l~~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~ 711 (1166)
.+++ ...|+|+||||+|+|+++||++||+|.|++|++++|++| +
T Consensus 480 ~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S----------------------------------~ 525 (653)
T cd01379 480 WRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS----------------------------------Q 525 (653)
T ss_pred cCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC----------------------------------c
Confidence 5443 468999999999999999999999999999999999765 4
Q ss_pred cHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHHHHHHhhhh
Q 001068 712 SVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFL 791 (1166)
Q Consensus 712 tv~~~fk~qL~~Lm~~L~~t~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L 791 (1166)
||+++||.||.+||++|.+|+||||||||||+.+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|+.||++|
T Consensus 526 tv~~~fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l 605 (653)
T cd01379 526 TVASYFRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFL 605 (653)
T ss_pred HHHHHHHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc-CCChHHHHHHHHHHcCcCCcceeecceeeeeeecccccccccc
Q 001068 792 LLESVA-SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 840 (1166)
Q Consensus 792 ~~~~~~-~~d~~~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 840 (1166)
++.... ..+.++.|..||..+++ ++|++|+||||||++++..||..|
T Consensus 606 ~~~~~~~~~~~~~~~~~il~~~~~--~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 606 AYRFEEEPVSSPESCALILEKAKL--DNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred ccccccccCChHHHHHHHHHhCCC--CCEEecceEEEEecCHHHHHHhcC
Confidence 876543 34678999999998776 579999999999999999998765
No 16
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=4.9e-176 Score=1621.31 Aligned_cols=667 Identities=51% Similarity=0.825 Sum_probs=619.2
Q ss_pred CccccccCCCCCchhHHHHHHHHhhcCccccccCCceEEeCCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHH
Q 001068 171 GVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREM 248 (1166)
Q Consensus 171 ~v~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m 248 (1166)
+++||+.|++|||++|||+|+.||.+++||||+|++|||||||+.+|+|+++++..|+++... |||||+||++||+.|
T Consensus 1 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m 80 (679)
T cd00124 1 GVDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLPNYGPETIRKYRGKSRSELPPHVFAIADRAYRNM 80 (679)
T ss_pred CCcchhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999987754 899999999999999
Q ss_pred HHcCceEEEEEcCCCCCChhHHHHHHHHHHHhccCC--CCchhhhhhhhHHHHhhcCcccCCCCCCCccccEEEEEEcCC
Q 001068 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG--SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSET 326 (1166)
Q Consensus 249 ~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~--~~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~F~~~ 326 (1166)
+.+++||||||||||||||||++|++|+||+.++++ ..++++|+++||||||||||||++|+||||||||++|+|+.+
T Consensus 81 ~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~f~~~ 160 (679)
T cd00124 81 LRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSNDTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQFDET 160 (679)
T ss_pred HhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCCcchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEEECCC
Confidence 999999999999999999999999999999999875 379999999999999999999999999999999999999999
Q ss_pred CceecceeeeeeccccccccccCCCCcchhHHHHhcCCCHHhHhhcCCCCccccccccCCCccCCCCcchHHHHHHHHHH
Q 001068 327 GKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEA 406 (1166)
Q Consensus 327 g~i~Ga~i~~yLLEKsRVv~q~~gERnfHIFYqLl~g~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~A 406 (1166)
|.|+||+|++||||||||++|++||||||||||||+|+++++|++|+|+++.+|+||++++|..++++||+++|+.++.|
T Consensus 161 g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~a 240 (679)
T cd00124 161 GKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEELKEA 240 (679)
T ss_pred CcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHhcCeeeEEeCCCCc--cccCChhHHHHHHHHhCCCHHHHHHhHccceeeeCCceEEe
Q 001068 407 LDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENH--VEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQ 484 (1166)
Q Consensus 407 l~~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~~~~--~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~i~~~~e~~~~ 484 (1166)
|++|||+++++..||+|||||||||||+|...++++. +.+.+.+.++.||.||||++++|.++|+++++.++++.+.+
T Consensus 241 l~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~ 320 (679)
T cd00124 241 LKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVKNTEVLSKAAELLGLDPEELEEALTYKVTKVGGEVITI 320 (679)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecCCHHHHHHHHHHhCCCHHHHHHHhhccEEEeCCceEEe
Confidence 9999999999999999999999999999997665443 77889999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEEEeecccCcCCCCCChHHHHHhhhhhHHHHhHhhh
Q 001068 485 NLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRH 564 (1166)
Q Consensus 485 ~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~ 564 (1166)
++++++|.++||+|||+||++||+|||.+||.+|.+. .....+||||||||||+|+.|||||||||||||+||++|+++
T Consensus 321 ~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq~~f~~~ 399 (679)
T cd00124 321 PLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPK-DGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQQFFNQH 399 (679)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCceeeEEeccccccCCCCCHHHHhcccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999874 235689999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCcccccccCCcHhHHHhhcC-CCccccccccccCCCCCChHHHHHHHHHHhCCCCCcccC---CCCC
Q 001068 565 LFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK-PLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGE---RDKS 640 (1166)
Q Consensus 565 ~F~~eq~ey~~EgI~~~~v~f~dn~~~ldLie~-p~Gll~lLDee~~~p~~td~~f~~kl~~~~~~~~~f~~~---~~~~ 640 (1166)
+|+.||++|.+|||+|+.++|.||++|||||++ |.|||++|||||++|+++|.+|++||++++++|++|... .+..
T Consensus 400 ~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~~~~~~~ 479 (679)
T cd00124 400 VFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKLKSNNAFYPAKKNAPTE 479 (679)
T ss_pred HHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCcccccCCCCCCCc
Confidence 999999999999999999999999999999999 999999999999999999999999999999999986322 3579
Q ss_pred eEEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCCccHHHHHHH
Q 001068 641 FTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKG 719 (1166)
Q Consensus 641 F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~s~~~l-~~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~tv~~~fk~ 719 (1166)
|+|+||||+|+|+++||++||+|.++++++++|++|++++ ..+|.......+. ... .....+....+..||+++|+.
T Consensus 480 F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~-~~~-~~~~~~~~~~~~~tv~~~f~~ 557 (679)
T cd00124 480 FTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGN-SST-GSTSSKGKKKKGQTVGSQFRT 557 (679)
T ss_pred eEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccc-ccc-ccccccccccCCCcHHHHHHH
Confidence 9999999999999999999999999999999999999885 5567543211110 000 001111223356899999999
Q ss_pred HHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHHHHHHhhhhccccccCC
Q 001068 720 QLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQ 799 (1166)
Q Consensus 720 qL~~Lm~~L~~t~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~ 799 (1166)
||+.||++|++|+||||||||||+.+.|+.||.++|++||||+||||+|||+|.|||+|++|.+|+.||++|++...+..
T Consensus 558 qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~rY~~L~~~~~~~~ 637 (679)
T cd00124 558 SLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSRYRFLAPDLLEKV 637 (679)
T ss_pred HHHHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHHHHHhCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998766533
Q ss_pred -ChHHHHHHHHHHcCcCCcceeecceeeeeeecccccccccc
Q 001068 800 -DPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 840 (1166)
Q Consensus 800 -d~~~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 840 (1166)
.....|..+|..+++++++|++|+||||||++++..||..|
T Consensus 638 ~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 638 SLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred CCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 22334999999999999999999999999999999999875
No 17
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=1.6e-175 Score=1614.50 Aligned_cols=666 Identities=30% Similarity=0.473 Sum_probs=592.1
Q ss_pred ccccccCCCCCchhHHHHHHHHhhcCccccccCCceEEeCCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHH
Q 001068 172 VDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMI 249 (1166)
Q Consensus 172 v~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~ 249 (1166)
||||+.|++|||++|||+|+.||.++.||||+|++|||||||+.+|+|+++++..|+++... |||||+||+.||+.|+
T Consensus 2 v~Dl~~L~~l~E~~il~~L~~Ry~~~~IYT~~G~iLIavNPyk~l~iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~ 81 (767)
T cd01386 2 VEDLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLALYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRALL 81 (767)
T ss_pred cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCeEEEECCCCCCCCCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999988754 8999999999999999
Q ss_pred HcCceEEEEEcCCCCCChhHHHHHHHHHHHhccCCC---CchhhhhhhhHHHHhhcCcccCCCCCCCccccEEEEEEcCC
Q 001068 250 RDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS---GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSET 326 (1166)
Q Consensus 250 ~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~---~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~F~~~ 326 (1166)
.+++||||||||||||||||++|+||+||+.++++. ...++|+++||||||||||||++||||||||||++|+|+.+
T Consensus 82 ~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~~~~~e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F~~~ 161 (767)
T cd01386 82 ETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVDGRVSVEKVRALFTILEAFGNVSTALNGNATRFTQILSLDFDQT 161 (767)
T ss_pred HcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCCcccHHHHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEECCC
Confidence 999999999999999999999999999999998653 23467999999999999999999999999999999999999
Q ss_pred CceecceeeeeeccccccccccCCCCcchhHHHHhcCCCHHhHhhcCCCCccccccccCCC-ccCCCCcchHHHHHHHHH
Q 001068 327 GKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSS-CYSINGVDDAEQFRIVVE 405 (1166)
Q Consensus 327 g~i~Ga~i~~yLLEKsRVv~q~~gERnfHIFYqLl~g~~~~~r~~l~L~~~~~y~yL~~~~-~~~~~~~dD~~~f~~~~~ 405 (1166)
|.|+||+|++|||||||||+|++||||||||||||+|++++++++|+|.+..++.++.... +...++++|+++|+.++.
T Consensus 162 g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~~~~ 241 (767)
T cd01386 162 GQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSRLQQ 241 (767)
T ss_pred CcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998754433333222 234577899999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHhcCeeeEEeCCCCccccCChhHHHHHHHHhCCCHHHHHHhHccceeeeCCce----
Q 001068 406 ALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDT---- 481 (1166)
Q Consensus 406 Al~~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~i~~~~e~---- 481 (1166)
||++|||+++++..||+|||||||||||+|... .+.+.+.+.+.++.||.||||+.++|.++|++++++++++.
T Consensus 242 Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~--~~~~~~~~~~~~~~vA~LLgv~~~~L~~al~~~~~~~~~~~~~~~ 319 (767)
T cd01386 242 AMEVLGISEGEQRAIWRVLAAIYHLGAAGATKV--AGRKQFARPEWAQKAAELLGCPLEELSSATFKHTLRGGINQMTTG 319 (767)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhccCceeeec--CCccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEeecceeeecc
Confidence 999999999999999999999999999999862 34567888899999999999999999999999988776543
Q ss_pred ---------EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEEEeecccCcCCCC------CChH
Q 001068 482 ---------IVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDR------NSFE 546 (1166)
Q Consensus 482 ---------~~~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~------NsfE 546 (1166)
+...+++++|.++||||||+||++||+|||.+||.+|.+.. ....+||||||||||+|+. ||||
T Consensus 320 ~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~-~~~~~IgiLDIfGFE~f~~n~~~~~NsfE 398 (767)
T cd01386 320 PQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSH-HSIASIMLVDTPGFQNPASQGKDRAATFE 398 (767)
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCcEEEEEecccccccccccccCCCCHH
Confidence 33467889999999999999999999999999999998753 3457999999999999974 8999
Q ss_pred HHHHhhhhhHHHHhHhhhhhHHHHHHHHhcCCccccccc-CCcHhHHHhhcC-C--------------CccccccccccC
Q 001068 547 QFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDF-EDNKDCLNLFEK-P--------------LGLLSLLDEEST 610 (1166)
Q Consensus 547 QLcINyaNEkLQ~~f~~~~F~~eq~ey~~EgI~~~~v~f-~dn~~~ldLie~-p--------------~Gll~lLDee~~ 610 (1166)
|||||||||+|||+||+++|+.||+||.+|||+|+.+.+ .||++||+|||+ | .|||++|||||+
T Consensus 399 QLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lLDEec~ 478 (767)
T cd01386 399 ELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLLDEEAL 478 (767)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhhhHhhc
Confidence 999999999999999999999999999999999987655 599999999997 4 499999999999
Q ss_pred CCCCChHHHHHHHHHHhCCCCCcccC--------CCCCeEEEeecce--eeecccchhhhccCcC-cHHHHHHHhhcCcc
Q 001068 611 FPNGTDLTFANKLKQHLNSNPCFRGE--------RDKSFTVSHYAGE--VIYDTTGFLEKNRDLL-HLDSIELLSSCSCH 679 (1166)
Q Consensus 611 ~p~~td~~f~~kl~~~~~~~~~f~~~--------~~~~F~I~HyaG~--V~Y~~~gfleKN~D~l-~~d~~~ll~~s~~~ 679 (1166)
+|++||++|++||++++++|++|... ....|+|+||||+ |+|+++||++||||.+ ..|++++|++|+++
T Consensus 479 ~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNkD~~~~~~~~~ll~~S~~~ 558 (767)
T cd01386 479 VPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKPNPAALNAPQLLQDSKRE 558 (767)
T ss_pred CCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcCCCCChHHHHHHHHhCCcH
Confidence 99999999999999999988887541 2468999999995 9999999999999965 68999999999987
Q ss_pred -hhHHhhccccc-----cCCC-C---ccCCCccC---------CCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecC
Q 001068 680 -LPQIFASNMLS-----QSNK-P---VVGPLYKA---------GGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIK 740 (1166)
Q Consensus 680 -l~~lf~~~~~~-----~s~~-~---~~~~~~~~---------~~~~~~~~tv~~~fk~qL~~Lm~~L~~t~phfIrCIk 740 (1166)
+..+|...... .+.. + ...+.++. +....++.||+++||.||+.||++|++|+||||||||
T Consensus 559 ~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~qFk~qL~~Lm~~L~~t~phfIRCIK 638 (767)
T cd01386 559 EINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCVQVKLQVDALIDTLRRSGLHFVHCYL 638 (767)
T ss_pred HHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhccCCeeEEEeC
Confidence 46788543200 0000 0 00000110 0112345799999999999999999999999999999
Q ss_pred CCCCCC----------------------CCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHHHHHHhhhhcccccc-
Q 001068 741 PNNFQS----------------------PGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVA- 797 (1166)
Q Consensus 741 PN~~k~----------------------p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~- 797 (1166)
||+.|. |+.||.++|++||||+||||+|||+|+|||+|++|.+|+.||++|.+...+
T Consensus 639 PN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~RY~~L~~~~~~~ 718 (767)
T cd01386 639 PQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLGEFVRRFGLLAEGLTKK 718 (767)
T ss_pred ccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccHHHHHHHHHhhChhhccc
Confidence 999874 789999999999999999999999999999999999999999999886432
Q ss_pred ------CCChHHHHHHHHHHcCcCCcceeecceeeeeeecccccccccc
Q 001068 798 ------SQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTR 840 (1166)
Q Consensus 798 ------~~d~~~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 840 (1166)
..|+++.|..||..+++++++|+||+||||||++++..||+.|
T Consensus 719 ~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 719 VGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 3588999999999999999999999999999999999999876
No 18
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=1e-174 Score=1574.50 Aligned_cols=748 Identities=53% Similarity=0.849 Sum_probs=707.4
Q ss_pred CCCCccCCccccccCCCCCchhHHHHHHHHhhcCccccccCCceEEeCCCCCCC-CCCHHHHHHhhc-CCCCCCchhHHH
Q 001068 164 ANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKS-KSIESPHVYAIT 241 (1166)
Q Consensus 164 ~np~~~~~v~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-iY~~~~~~~y~~-~~~~~PHiyavA 241 (1166)
.||+. .++|||+.|+|||||+|||||+.||..+.||||.|.+|||||||+.+| +|+++.|..|+. .....||+|++|
T Consensus 3 ~~~~~-~~~dDlt~lsyl~epaVL~~L~~Ry~~~~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~~~~~~l~ph~favA 81 (862)
T KOG0160|consen 3 PNPPP-MGVDDLTTLSYLHEPAVLHNLAKRYEQNQIYTYKGIVLIAINPFKRLPHLYGKKMISAYQAIQGELSPHLFAVA 81 (862)
T ss_pred CCCCC-CCccccccCCccCcHHHHHHHHHhhhhcccchhhceeeeeeccccccchhccHHHHHhhcccccccCcchhhHH
Confidence 45666 899999999999999999999999999999999999999999999999 999999999992 223379999999
Q ss_pred HHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhccCC--C-CchhhhhhhhHHHHhhcCcccCCCCCCCccccE
Q 001068 242 DTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG--S-GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKL 318 (1166)
Q Consensus 242 ~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~--~-~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~ 318 (1166)
+.||+.|..++.||+||||||||||||+++|++|+||++++++ . +||++||.+|||+||||||||.+||||||||||
T Consensus 82 ~~ay~~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~ 161 (862)
T KOG0160|consen 82 EEAYRDMTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGSVEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKV 161 (862)
T ss_pred HHHHHHhhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhccchhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhH
Confidence 9999999999999999999999999999999999999999987 3 899999999999999999999999999999999
Q ss_pred EEEEEcCCCceecceeeeeeccccccccccCCCCcchhHHHHhcCCCHHhHhhcCCCCccccccccCCCccCCCCcchHH
Q 001068 319 IEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAE 398 (1166)
Q Consensus 319 i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERnfHIFYqLl~g~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~ 398 (1166)
++|+||..|+|+||+|.|||||||||+.++++|||||||||+|+|++ +++++|.|..+..|.|++|++|..+++++|+.
T Consensus 162 iei~Fd~~~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~-~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~ 240 (862)
T KOG0160|consen 162 IEITFDQQGRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAP-EELEKLKLGTLRRFSYLNQSACVLISGVSDAE 240 (862)
T ss_pred HHHhhhhhcccccceeeeEEeecceeeecCccccchHHHHHHhcCCc-hhhhccCcCccccceecccccchhhcccccHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeeEEeCCCCccccCChhHHHHHHHHhCCCHHHHHHhHccceeeeC
Q 001068 399 QFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVG 478 (1166)
Q Consensus 399 ~f~~~~~Al~~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~i~~~ 478 (1166)
+|..++.||..+||+.++|+.||++||||||||||+|...++++.+.+..+ .+..+|.||||+++.|...|+.|.|.++
T Consensus 241 e~~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~~-~~~~~a~Llg~~~~~l~~~L~~r~i~~~ 319 (862)
T KOG0160|consen 241 EFLSTTEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVDD-HLWTAAELLGCDEEALEQWLSKRKILTA 319 (862)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEeecccccccccccch-HHHHHHHHhCCCHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999998776654444444 8999999999999999999999999999
Q ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEEEeecccCcCCCCCChHHHHHhhhhhHHH
Q 001068 479 NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQ 558 (1166)
Q Consensus 479 ~e~~~~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ 558 (1166)
++.++++++..+|...||+|||.||++||+|+|.+||.+|..++.....+||||||||||.|..|||||||||||||+||
T Consensus 320 ~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINyanEkLq 399 (862)
T KOG0160|consen 320 RESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYANEKLQ 399 (862)
T ss_pred cceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccccCcHHHhhhhhHHHHhh
Confidence 99999999999999999999999999999999999999999876666789999999999999999999999999999999
Q ss_pred HhHhhhhhHHHHHHHHhcCCcccccccCCcHhHHHhhcCCCccccccccccCCCCCChHHHHHHHHHHhCCCCCcccCC-
Q 001068 559 QHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER- 637 (1166)
Q Consensus 559 ~~f~~~~F~~eq~ey~~EgI~~~~v~f~dn~~~ldLie~p~Gll~lLDee~~~p~~td~~f~~kl~~~~~~~~~f~~~~- 637 (1166)
|+||+|+|+.||++|..|+|+|..|+|.||++|+++||+|.|+++||||||++|.++|.+|..||.+.+.+|++|.+++
T Consensus 400 q~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~~~Gi~~Llde~c~lp~~t~~~~a~KL~~~~~~~~~f~kpr~ 479 (862)
T KOG0160|consen 400 QQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEKPLGILALLDEECMLPKGTDETLAQKLYQTLKRNKRFTKPRL 479 (862)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhccccchhhccchhccCCCCCcchHHHHHHHHhccCCccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred -CCCeEEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcchhHHhhccccccCCCCccCCCccCCCCCCCCccHHHH
Q 001068 638 -DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATK 716 (1166)
Q Consensus 638 -~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~s~~~l~~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~tv~~~ 716 (1166)
...|+|.||||+|+|++.|||+||||++++++++++..|++.+...+......++ .+.+++.||+++
T Consensus 480 ~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~------------~~~~~~~tv~s~ 547 (862)
T KOG0160|consen 480 SRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADS------------SAKSKRSTVGSQ 547 (862)
T ss_pred CcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcch------------hhhhhcccHHHH
Confidence 3589999999999999999999999999999999999999987665543221111 135667899999
Q ss_pred HHHHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHHHHHHhhhhccccc
Q 001068 717 FKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESV 796 (1166)
Q Consensus 717 fk~qL~~Lm~~L~~t~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~ 796 (1166)
|+.+|..||.+|++|.||||||||||..+.|..|+..+|++|||||||||+|||+.+|||.|.+|.||+.||++|+| ..
T Consensus 548 fk~~l~~Lm~~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~~~L~~-~~ 626 (862)
T KOG0160|consen 548 FKLQLISLMETLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRYGILMP-ND 626 (862)
T ss_pred HHHHHHHHHHHhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHHhhcCc-ch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 55
Q ss_pred cCCChHHHHHHHHHHcCcCCcceeecceeeeeeecccccccccccccccch-hhhhhhhcccccchhhhccchhhhhHHH
Q 001068 797 ASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGI-LRVQSCFRGHQARLCLKELRRGIVALQS 875 (1166)
Q Consensus 797 ~~~d~~~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R~~~l~aa-v~IQa~~Rg~~aRr~y~~lr~aai~IQs 875 (1166)
...|++..|..||+..+++ .|++|+||||||+++++.|+..|...+.++ +.||+.+|+|+.|+.|..+|++++.||+
T Consensus 627 ~~~~~~~~~~~il~~~~~~--~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~ 704 (862)
T KOG0160|consen 627 SASDDLSLCKVILEKLGLE--LYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQA 704 (862)
T ss_pred hcccchHHHHHHHHHhchh--ceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667799999999999887 999999999999999999999999998875 5699999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHhhHHHHH
Q 001068 876 FIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRR 933 (1166)
Q Consensus 876 ~~RG~~aRr~y~~l~~r~~AAi~IQ~~~R~~~aRk~~~~~r~aai~IQs~~Rg~laRr 933 (1166)
++||+++|+. .+ +..||+.||+.||++..|+.|...+.+++.+|+.+|++++|+
T Consensus 705 ~~rG~~~r~~--~~--~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 705 YSRGVLARRE--TE--REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred hhhHHHHHHh--hH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999992 22 678999999999999999999999999999999999999998
No 19
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.3e-171 Score=1460.32 Aligned_cols=756 Identities=37% Similarity=0.618 Sum_probs=674.7
Q ss_pred EEEEecCCCCEEeEEEEEecCCeeEEEcC--CCcEEEEeCCCcccCCCCccCCccccccCCCCCchhHHHHHHHHhhcCc
Q 001068 121 QSWFQLPNGNWELGKILSISGTESVISLP--EGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDM 198 (1166)
Q Consensus 121 ~vw~~~~~~~~~~~~v~~~~~~~~~v~~~--~g~~~~v~~~~~~~~np~~~~~v~Dl~~L~~LnE~svL~~L~~Ry~~~~ 198 (1166)
.||++|+.++|..|.|+.+..+..++..- .|.+++-..++++++..+...+|||-|.|-||||+.+|+|++.||.+|.
T Consensus 6 ~VWi~d~tdGf~~~rI~di~~~~ftl~~~d~k~~t~~~~~edv~a~eeD~~k~veDNC~Lm~LNEATlL~Nik~RY~k~k 85 (1259)
T KOG0163|consen 6 LVWIRDATDGFIAGRITDIGAKGFTLTPLDRKGPTVTRHFEDVHACEEDSPKDVEDNCELMHLNEATLLNNIKLRYYKDK 85 (1259)
T ss_pred eEeecccccchhheeeeeecCCceEEeecccCCcceeehhhhccccccccccccccccceeeccHHHHhhhhhhhhccCc
Confidence 69999999999999999998888887543 6778888889999987777789999999999999999999999999999
Q ss_pred cccccCCceEEeCCCCCCC-CCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHH
Q 001068 199 IYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 199 iYT~~G~iLiavNP~k~l~-iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il 275 (1166)
||||+.+||||||||..|+ +|+++.+..|++++.+ ||||||||+.||+.|..-+.+||||+||||||||||++|.++
T Consensus 86 IYtYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k~SQSIIVSGESGAGKTEstK~vL 165 (1259)
T KOG0163|consen 86 IYTYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYKLSQSIIVSGESGAGKTESTKAVL 165 (1259)
T ss_pred hhhhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHhhcccEEEecCCCCCcchhHHHHH
Confidence 9999999999999999998 9999999999999976 899999999999999999999999999999999999999999
Q ss_pred HHHHhccC-CCCchhhhhhhhHHHHhhcCcccCCCCCCCccccEEEEEEcCCCceecceeeeeeccccccccccCCCCcc
Q 001068 276 QYLAALGG-GSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAY 354 (1166)
Q Consensus 276 ~yLa~~~~-~~~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERnf 354 (1166)
+||+.--| +..|+.+||.+||||||||||||+||+||||||||++|||+.+|.++|+-|.+||||||||+.|+.+||||
T Consensus 166 rYLces~gsag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvGGyvSHYLLEkSRiC~Qaa~ERNY 245 (1259)
T KOG0163|consen 166 RYLCESWGSAGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVGGYVSHYLLEKSRICRQAAEERNY 245 (1259)
T ss_pred HHHHhccCCCCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCceechhhhHHHHHHhHHHHhhhcccch
Confidence 99998644 34899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhcCCCHHhHhhcCCCCccccccccCCCcc---------------------------CCCCcchHHHHHHHHHHH
Q 001068 355 HIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCY---------------------------SINGVDDAEQFRIVVEAL 407 (1166)
Q Consensus 355 HIFYqLl~g~~~~~r~~l~L~~~~~y~yL~~~~~~---------------------------~~~~~dD~~~f~~~~~Al 407 (1166)
||||||++|++|+++++|.|..|++|+||+.+ |. .-+-+||..+|+.+..||
T Consensus 246 HiFY~LiAGas~dl~~kL~L~~pd~f~YL~rG-~t~yFan~~t~~ki~~nr~S~~~~~~~~~kD~iidD~~dF~rl~~Al 324 (1259)
T KOG0163|consen 246 HIFYQLIAGASPDLRKKLSLGKPDDFRYLKRG-CTQYFANAKTEQKIPGNRKSKNHQQKGSLKDPIIDDYQDFHRLEKAL 324 (1259)
T ss_pred hHHHHHHcCCCHHHHHHhccCCchhhhHHhcc-hhhhccCcchhhcCcccccCccccccCcccCcccccHHHHHHHHHHH
Confidence 99999999999999999999999999999853 21 112378999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHhcCeeeEEeCC--CCcccc--CChhHHHHHHHHhCCCHHHHHHhHccceeee-----C
Q 001068 408 DIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN--ENHVEP--VADEGLITVAKLIGCDIGELKLALSTRKMRV-----G 478 (1166)
Q Consensus 408 ~~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~--~~~~~~--~~~~~l~~aA~LLgv~~~~L~~~L~~~~i~~-----~ 478 (1166)
+.+|++++|+..||+++|||||||||+|+...+ .+.|.+ .+...|..+|+|||++.++|...||.|.|.+ .
T Consensus 325 ~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n~seqsL~~~a~LLGld~~elr~~L~aRvMqtt~GG~k 404 (1259)
T KOG0163|consen 325 KLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSNGSEQSLTIAAELLGLDQTELRTGLCARVMQTTKGGFK 404 (1259)
T ss_pred HhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceecccCchhhHHHHHHHhCCCHHHHHHHHHHHHHHhccCCcc
Confidence 999999999999999999999999999987543 234554 4456799999999999999999999998864 3
Q ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEEEeecccCcCCCCCChHHHHHhhhhhHHH
Q 001068 479 NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQ 558 (1166)
Q Consensus 479 ~e~~~~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ 558 (1166)
|..|.+||.+.+|..+||||||+||++||||||.+||+++... .+..+||||||.|||-|.+|||||||||||||+||
T Consensus 405 GTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPFe--~St~fiGVLDiAGFEyf~~NSFEQFCINyCNEKLQ 482 (1259)
T KOG0163|consen 405 GTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPFE--KSTFFIGVLDIAGFEYFAVNSFEQFCINYCNEKLQ 482 (1259)
T ss_pred ceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhcccccc--cccceeEEEeeccceeeecccHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999764 34679999999999999999999999999999999
Q ss_pred HhHhhhhhHHHHHHHHhcCCcccccccCCcHhHHHhhcC-CCccccccccccCCCCCChHHHHHHHHHHhCCCCCcccCC
Q 001068 559 QHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK-PLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER 637 (1166)
Q Consensus 559 ~~f~~~~F~~eq~ey~~EgI~~~~v~f~dn~~~ldLie~-p~Gll~lLDee~~~p~~td~~f~~kl~~~~~~~~~f~~~~ 637 (1166)
+|||+.|++.||+.|+.||+....|+|.||++||+|||. ..|||.|||||..+|+.++..|....++.+++|=....||
T Consensus 483 ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~HfRL~~PR 562 (1259)
T KOG0163|consen 483 KFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHESNKNHFRLDLPR 562 (1259)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHhhhcceeecCCc
Confidence 999999999999999999999999999999999999998 8999999999999999999999999998776653322221
Q ss_pred ------------CCCeEEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCC
Q 001068 638 ------------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAG 704 (1166)
Q Consensus 638 ------------~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~s~~~l-~~lf~~~~~~~s~~~~~~~~~~~~ 704 (1166)
...|.|+||||.|+|++.-|+|||.|.|+..+-.|+..|++++ +.+|.+...+. ..+.
T Consensus 563 kSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ll~sLF~S~s~t~-a~~~-------- 633 (1259)
T KOG0163|consen 563 KSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNPLLVSLFPSGSSTS-AKQT-------- 633 (1259)
T ss_pred hhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHHhccchHHHHHccCCCCCc-cccc--------
Confidence 3579999999999999999999999999999999999999874 67886432111 1111
Q ss_pred CCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHHH
Q 001068 705 GADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKF 784 (1166)
Q Consensus 705 ~~~~~~~tv~~~fk~qL~~Lm~~L~~t~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF 784 (1166)
+.....-||+++|+.||..||+.|++|+.|||||||||..+.|..||...++.||.|+|+..++++.+.|||.|.+|.+.
T Consensus 634 ~gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~LMq~GyPSR~~F~dL 713 (1259)
T KOG0163|consen 634 RGKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLELMQHGYPSRTSFADL 713 (1259)
T ss_pred cceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHHHhcCCCccccHHHH
Confidence 11334579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccccccCCChHHHHHHHHHHcCcCCcceeecceeeeeeecccccccccccccccchhhhhhhhcccccchhhh
Q 001068 785 ARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLK 864 (1166)
Q Consensus 785 ~~RY~~L~~~~~~~~d~~~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R~~~l~aav~IQa~~Rg~~aRr~y~ 864 (1166)
..-|+-.+|+.....||+-.|.++...++++..+|++|.||||||.|-++..+.....--..+..+-+.+.-|+.+.+++
T Consensus 714 YamYkk~lPpkLarLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMksDPe~m~~lv~kVn~WLv~sRWk 793 (1259)
T KOG0163|consen 714 YAMYKKVLPPKLARLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMKSDPETMLELVAKVNKWLVRSRWK 793 (1259)
T ss_pred HHHHHhhCCHhhhcCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHhcCHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999998888999999999999999999999999999999999998887766544333443444444555555554
Q ss_pred ccc-----------------hhhhhHHHHHHhHHHHHHHHH
Q 001068 865 ELR-----------------RGIVALQSFIRGEKIRKEYAL 888 (1166)
Q Consensus 865 ~lr-----------------~aai~IQs~~RG~~aRr~y~~ 888 (1166)
+.. .+++.+|+++|||++|+++..
T Consensus 794 k~q~~a~sVIKLkNkI~yRae~v~k~Q~~~Rg~L~rkr~~~ 834 (1259)
T KOG0163|consen 794 KSQYGALSVIKLKNKIIYRAECVLKAQRIARGYLARKRHRP 834 (1259)
T ss_pred HhhhhhhheeehhhHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 432 345666677777776666643
No 20
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=8.6e-173 Score=1470.53 Aligned_cols=699 Identities=41% Similarity=0.683 Sum_probs=649.6
Q ss_pred ccCCccccccCCCCCchhHHHHHHHHhhcCccccccCCceEEeCCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHH
Q 001068 168 ILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAI 245 (1166)
Q Consensus 168 ~~~~v~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay 245 (1166)
...||+||+-|+-++|.+|..||+.||..+.||||+|+|||+||||+.+|+|++..|..|+++..- ||||||+|+++|
T Consensus 16 k~vGVdDm~LLsKiteesI~eNLkkRf~n~~IfTYIG~VLISVNPFk~m~~ft~~~~~~YqG~~q~E~pPHiyAladnmY 95 (1106)
T KOG0162|consen 16 KHVGVDDMVLLSKITEESINENLKKRFMNGYIFTYIGHVLISVNPFKQMPYFTEKEMELYQGAAQYENPPHIYALADNMY 95 (1106)
T ss_pred eeccccceeehhhccHHHHHHHHHHHhhcCceEEEeeeEEEeecchhccccchHHHHHHhhchhhccCCchhhhhHHHHH
Confidence 456899999999999999999999999999999999999999999999999999999999998764 899999999999
Q ss_pred HHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhccCCC----CchhhhhhhhHHHHhhcCcccCCCCCCCccccEEEE
Q 001068 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS----GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEI 321 (1166)
Q Consensus 246 ~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~----~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l 321 (1166)
++|..+.+|||||||||||||||+++|.||+|++.+++++ .|.+-||++||+|||||||||+||+||||||||++|
T Consensus 96 ~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~~g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~Ei 175 (1106)
T KOG0162|consen 96 RNMKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSGGGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYLEI 175 (1106)
T ss_pred HHhhhccccceEEEecCCCCCchHHHHHHHHHHHHhccCCcchhhhhhHhhccchHHHHhcchhhhccCCcccccceEEE
Confidence 9999999999999999999999999999999999998765 567889999999999999999999999999999999
Q ss_pred EEcCCCceecceeeeeeccccccccccCCCCcchhHHHHhcCCCHHhHhhcCCCCccccccccCCCccCCCCcchHHHHH
Q 001068 322 HFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFR 401 (1166)
Q Consensus 322 ~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERnfHIFYqLl~g~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~ 401 (1166)
+|+..|..+|++|..|||||||||.|.+|||||||||||+.||+.+.|..||+..++.|.||+.++|+.++++||..+|+
T Consensus 176 ~Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kdfq 255 (1106)
T KOG0162|consen 176 QFSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKDFQ 255 (1106)
T ss_pred EecCCCCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeeccccceeccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeeEEeCCCCccccCChhHHHHHHHHhCCCHHHHHHhHccceeeeC---
Q 001068 402 IVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVG--- 478 (1166)
Q Consensus 402 ~~~~Al~~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~i~~~--- 478 (1166)
.++.||+++|+.++||+.||++||+|||||||.|.. .++.+.+.+.+.++-.|.||||++..|.+.||.|.|...
T Consensus 256 ~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~E--e~~~a~V~~~~~~~f~ayLlgi~s~~l~~~Lt~R~M~s~~G~ 333 (1106)
T KOG0162|consen 256 ETLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIE--EGNYAAVSDKSVLEFPAYLLGIDSARLEEKLTSRIMESKWGG 333 (1106)
T ss_pred HHHHHheeccCChHHHHHHHHHHHHHHhccceeEEe--eCCcceeccchHHHhHHHHhcCCHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999997 345677888899999999999999999999999998753
Q ss_pred -CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEEEeecccCcCCCCCChHHHHHhhhhhHH
Q 001068 479 -NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERL 557 (1166)
Q Consensus 479 -~e~~~~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkL 557 (1166)
.+.+..+|+++||...||||||+||.+||||||++||.+|...+.....+||||||||||+|+.||||||||||.||+|
T Consensus 334 kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CINfVNEKL 413 (1106)
T KOG0162|consen 334 KREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCINFVNEKL 413 (1106)
T ss_pred cceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHHHHHHHH
Confidence 4889999999999999999999999999999999999999865555678999999999999999999999999999999
Q ss_pred HHhHhhhhhHHHHHHHHhcCCcccccccCCcHhHHHhhcC--CCccccccccccCCC----CCChHHHHHHHHHHhCCCC
Q 001068 558 QQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK--PLGLLSLLDEESTFP----NGTDLTFANKLKQHLNSNP 631 (1166)
Q Consensus 558 Q~~f~~~~F~~eq~ey~~EgI~~~~v~f~dn~~~ldLie~--p~Gll~lLDee~~~p----~~td~~f~~kl~~~~~~~~ 631 (1166)
||.|++-+++.|||||.+|||.|++|+|.||.-++||||. |.||+++|||-|... .|.|.+|+.+|...+++||
T Consensus 414 QQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~~~s~p 493 (1106)
T KOG0162|consen 414 QQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRLNKLFGSHP 493 (1106)
T ss_pred HHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999997 999999999999754 5679999999999999999
Q ss_pred CcccCCCCCeEEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCC
Q 001068 632 CFRGERDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQK 710 (1166)
Q Consensus 632 ~f~~~~~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~s~~~l-~~lf~~~~~~~s~~~~~~~~~~~~~~~~~~ 710 (1166)
+|.. +...|+|+||||+|+||++||.+||||.|..|++.||.+|+++| ..+|.......+ ..+.
T Consensus 494 hF~~-~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe~v~~ds--------------krRP 558 (1106)
T KOG0162|consen 494 HFES-RSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPENVDADS--------------KRRP 558 (1106)
T ss_pred cccc-ccCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCchhhcccc--------------cCCC
Confidence 9974 46789999999999999999999999999999999999999876 456754432211 2234
Q ss_pred ccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHHHHHHhhh
Q 001068 711 LSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGF 790 (1166)
Q Consensus 711 ~tv~~~fk~qL~~Lm~~L~~t~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~ 790 (1166)
+|.+.+.+.|-+.|+.+|..|.||||||||||+.|.|+.||...|++|+.|+|+-|-|||+|+||.+|..|+.|++||.+
T Consensus 559 ~Tag~kIkkqANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyai 638 (1106)
T KOG0162|consen 559 PTAGDKIKKQANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAI 638 (1106)
T ss_pred CCchhhHHhhHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHhee
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccC--CChHHHHHHHHHHcCcCCcceeecceeeeeeec-ccccccccccccccch-hhhhhhhcccccchhhhcc
Q 001068 791 LLLESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAG-QIGMLEDTRNRTLHGI-LRVQSCFRGHQARLCLKEL 866 (1166)
Q Consensus 791 L~~~~~~~--~d~~~~~~~il~~~~~~~~~~~iGkTKVFlr~~-~~~~LE~~R~~~l~aa-v~IQa~~Rg~~aRr~y~~l 866 (1166)
|.|.++++ .|.+.+|+.||...++++++||+|.||||+|.. .+..||+.|++..... .+||++||.|.+|+.|.++
T Consensus 639 lsp~t~~twqGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWRrfv~rrky~k~ 718 (1106)
T KOG0162|consen 639 LSPQTWPTWQGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWRRFVARRKYEKM 718 (1106)
T ss_pred cCcccccccccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999885 478999999999999999999999999999985 5889999999988764 5788888888888888888
Q ss_pred chhhhhHHHHHHhHHHHHHH
Q 001068 867 RRGIVALQSFIRGEKIRKEY 886 (1166)
Q Consensus 867 r~aai~IQs~~RG~~aRr~y 886 (1166)
|.-+..| .-|-..||+|
T Consensus 719 ree~t~l---l~gKKeRRr~ 735 (1106)
T KOG0162|consen 719 REEATKL---LLGKKERRRY 735 (1106)
T ss_pred HHHHHHH---hcchHHHHHH
Confidence 7655543 2355555555
No 21
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=4.8e-170 Score=1583.32 Aligned_cols=658 Identities=50% Similarity=0.845 Sum_probs=577.8
Q ss_pred ccccccCCCCCchhHHHHHHHHhhcCccccccCCceEEeCCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHH
Q 001068 172 VDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMI 249 (1166)
Q Consensus 172 v~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~ 249 (1166)
||||+.|++|||++|||+|+.||..|.||||+|++||+||||+++|+|+++++..|+++... |||||++|++||+.|+
T Consensus 1 veDl~~l~~l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m~ 80 (689)
T PF00063_consen 1 VEDLASLSHLNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKPLPLYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQML 80 (689)
T ss_dssp -SBGGGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--STSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHHH
T ss_pred CChhhhCCCCCHHHHHHHHHHHHccCCccccCCCeEEEECCchhhhhhhhhhhhhhhhhccccccCccchhhhccccccc
Confidence 79999999999999999999999999999999999999999999999999999999987544 8999999999999999
Q ss_pred HcCceEEEEEcCCCCCChhHHHHHHHHHHHhccCCC------CchhhhhhhhHHHHhhcCcccCCCCCCCccccEEEEEE
Q 001068 250 RDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS------GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHF 323 (1166)
Q Consensus 250 ~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~------~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~F 323 (1166)
++++||||||||||||||||++|++|+||+.++.+. .++++|+++||||||||||||++|+||||||||++|+|
T Consensus 81 ~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~f 160 (689)
T PF00063_consen 81 RTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQF 160 (689)
T ss_dssp HHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEE
T ss_pred ccccccceeeccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEEe
Confidence 999999999999999999999999999999998764 48899999999999999999999999999999999999
Q ss_pred cCCCceecceeeeeeccccccccccCCCCcchhHHHHhcCCCHHhHhhcCCCCccccccccCCCccCCCCcchHHHHHHH
Q 001068 324 SETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIV 403 (1166)
Q Consensus 324 ~~~g~i~Ga~i~~yLLEKsRVv~q~~gERnfHIFYqLl~g~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~ 403 (1166)
+.+|.++||+|++||||||||+.+++||||||||||||+|+++++|++|+|.++.+|+||++++|..+++.+|+.+|+.+
T Consensus 161 ~~~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~l 240 (689)
T PF00063_consen 161 DDSGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQEL 240 (689)
T ss_dssp ETTSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHHH
T ss_pred cccccccccceecccccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeeEEeCCCCccccCChhHHHHHHHHhCCCHHHHHHhHccceeeeCCceEE
Q 001068 404 VEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIV 483 (1166)
Q Consensus 404 ~~Al~~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~i~~~~e~~~ 483 (1166)
+.||++|||+++++..||+|||||||||||+|...++++.+.+.+.+.++.||.||||++++|.++|+++++.+++|.++
T Consensus 241 ~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~ 320 (689)
T PF00063_consen 241 KDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENSEELQKAAELLGVDSEELEKALTTRTIKVGGETVT 320 (689)
T ss_dssp HHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTSHHHHHHHHHTTS-HHHHHHHHHSEEEESTTSEEE
T ss_pred hhhhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechHHHHHHhhhhcCCCHHHHHHHHhhccccccccccc
Confidence 99999999999999999999999999999999998877778899999999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEEEeecccCcCCCCCChHHHHHhhhhhHHHHhHhh
Q 001068 484 QNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNR 563 (1166)
Q Consensus 484 ~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~ 563 (1166)
++++++||.++||+|||+||++||+|||.+||.+|.+.......+||||||||||+|..|||||||||||||+||++|++
T Consensus 321 ~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~~f~~ 400 (689)
T PF00063_consen 321 KPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQFFNQ 400 (689)
T ss_dssp EE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCccccccccccccccceeeeccccccceeee
Confidence 99999999999999999999999999999999999986645678999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhcCCccccccc-CCcHhHHHhhcC-CCccccccccccCCCCCChHHHHHHHHHHh-CCCCCcccC----
Q 001068 564 HLFKLEQEEYIQDGIDWAKVDF-EDNKDCLNLFEK-PLGLLSLLDEESTFPNGTDLTFANKLKQHL-NSNPCFRGE---- 636 (1166)
Q Consensus 564 ~~F~~eq~ey~~EgI~~~~v~f-~dn~~~ldLie~-p~Gll~lLDee~~~p~~td~~f~~kl~~~~-~~~~~f~~~---- 636 (1166)
++|..||++|.+|||+|..++| .||++|||||++ |.|||++|||||.+|+++|++|+++|...+ +++++|.++
T Consensus 401 ~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~~~~~~~~~~~~~~~~~~ 480 (689)
T PF00063_consen 401 HIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLLKRHSGKHPSFVKPRFSR 480 (689)
T ss_dssp HHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHHHHHTTTSTTEECTSSST
T ss_pred ecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHHhhcccCCCccccccccc
Confidence 9999999999999999999999 899999999998 999999999999999999999999999999 888888665
Q ss_pred --CCCCeEEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCC--------CccCCCccCCC
Q 001068 637 --RDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNK--------PVVGPLYKAGG 705 (1166)
Q Consensus 637 --~~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~s~~~l-~~lf~~~~~~~s~~--------~~~~~~~~~~~ 705 (1166)
....|+|+||||+|+|+++||++||+|.++++++++|++|++.+ ..+|+......... ...+......+
T Consensus 481 ~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (689)
T PF00063_consen 481 STSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEATATSSSSSSLSRRSSSSSTQSRSSG 560 (689)
T ss_dssp SSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH---S-S-S-BTTTTCCCTTSSCCC
T ss_pred ccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCcccccccccccccccccccccccccccccccccccc
Confidence 36799999999999999999999999999999999999999875 56776543200000 00001111222
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHHHH
Q 001068 706 ADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFA 785 (1166)
Q Consensus 706 ~~~~~~tv~~~fk~qL~~Lm~~L~~t~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~ 785 (1166)
...+..||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||+|+++|++.|||+|++|.+|+
T Consensus 561 ~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~Gyp~r~~~~eF~ 640 (689)
T PF00063_consen 561 SKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQGYPVRLTFDEFL 640 (689)
T ss_dssp GGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHCSSSEEEEHHHHH
T ss_pred cccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhcccceecchhhhh
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcccccc-----CCChHHHHHHHHHHcCcCCcceeecceeeeee
Q 001068 786 RRYGFLLLESVA-----SQDPLSVSVAILHQFNILPEMYQVGYTKLFFR 829 (1166)
Q Consensus 786 ~RY~~L~~~~~~-----~~d~~~~~~~il~~~~~~~~~~~iGkTKVFlr 829 (1166)
+||++|++.... ..++++.|+.||+.++++++.|++|+||||||
T Consensus 641 ~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 641 RRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp HHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 999999998764 36899999999999999999999999999997
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=1.6e-115 Score=1082.72 Aligned_cols=769 Identities=36% Similarity=0.502 Sum_probs=658.8
Q ss_pred cCCCCccCCccccccCCCCCchhHHHHHHHHhhcCccccccCCceEEeCCCCCCC-CCCHHHHHHhhcCCCC--CCchhH
Q 001068 163 SANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIE--SPHVYA 239 (1166)
Q Consensus 163 ~~np~~~~~v~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~-iY~~~~~~~y~~~~~~--~PHiya 239 (1166)
...++...+++||++|.+++|+.+++||..||..+.||||+|.+|++||||+.+| +|.++++..|.++..+ +||||+
T Consensus 54 ~~~~~~~~~~~Dl~~l~~l~e~~~~~nl~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa 133 (1062)
T KOG4229|consen 54 ALHRPQVEDVEDLAQLEDLSEATILENLLVRYKRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFA 133 (1062)
T ss_pred cccccccccHHHHhhccccchhhhhHHHHHHHccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCcchhh
Confidence 4456678899999999999999999999999999999999999999999999999 9999999999966654 799999
Q ss_pred HHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhcc-CCC-CchhhhhhhhHHHHhhcCcccCCCCCCCcccc
Q 001068 240 ITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALG-GGS-GIEYEILKTNPILEAFGNAKTSRNDNSSRFGK 317 (1166)
Q Consensus 240 vA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~-~~~-~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk 317 (1166)
+|+.||++|++...||||+|||||||||||+|+++++||+.++ +.. .++..|+.++|+|||||||+|++|||||||||
T Consensus 134 ~ad~~y~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk 213 (1062)
T KOG4229|consen 134 IADLAYQDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQGNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGK 213 (1062)
T ss_pred hhhhHHHhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHhcCCCCchhhhhhcchHHHHHhcccCCcccCchhhhhh
Confidence 9999999999999999999999999999999999999999999 433 78999999999999999999999999999999
Q ss_pred EEEEEEcCCCceecceeeeeeccccccccccCCCCcchhHHHHhcCCCHHhHhhcCCCCccccccccCCCccCC-CCcch
Q 001068 318 LIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSI-NGVDD 396 (1166)
Q Consensus 318 ~i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERnfHIFYqLl~g~~~~~r~~l~L~~~~~y~yL~~~~~~~~-~~~dD 396 (1166)
||+++|..+|.|.||+|..||||||||+.|+.+||||||||++++|++..++..+.|..+.+|.||+++.+..+ ++.++
T Consensus 214 ~i~~~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~ 293 (1062)
T KOG4229|consen 214 YIKVNFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGEDD 293 (1062)
T ss_pred eEEeccccCCCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeeEEeCC--CCccccCChhHHHHHHHHhCCCHHHHHHhHccce
Q 001068 397 AEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN--ENHVEPVADEGLITVAKLIGCDIGELKLALSTRK 474 (1166)
Q Consensus 397 ~~~f~~~~~Al~~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~--~~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~ 474 (1166)
..+|..+..||..+||+.+++..||+++|||||+|||+|..... .+.+.+.+.+.+..+|.||.++.+.|.++|+.++
T Consensus 294 ~~~~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~~~~v~~vA~lL~~~~~~l~~alt~~~ 373 (1062)
T KOG4229|consen 294 VAQFIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVENEEAVERVACLLLIKEKLLQEALTARV 373 (1062)
T ss_pred HHhHHHHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhcccchHHHHHHHHhhcCHHHhhhhhcccc
Confidence 99999999999999999999999999999999999999976433 3457788999999999999999999999999999
Q ss_pred eeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCC-CcceEEEeecccCcCCCCCChHHHHHhhh
Q 001068 475 MRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRR-TGRSISILDIYGFESFDRNSFEQFCINYA 553 (1166)
Q Consensus 475 i~~~~e~~~~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~-~~~~IgILDi~GFE~f~~NsfEQLcINya 553 (1166)
....||.+..+++.++|.++||++||+||++||+|||.+||..+.+.... ...+||||||||||+|..|+|||||||||
T Consensus 374 ~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in~A 453 (1062)
T KOG4229|consen 374 NVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNSFEQLCINLA 453 (1062)
T ss_pred eeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999864321 36899999999999999999999999999
Q ss_pred hhHHHHhHhhhhhHHHHHHHHhcCCcccccccCCcHhHHHhhcC-CCccccccccccCCCCCChHHHHHHHHHHhCCCCC
Q 001068 554 NERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK-PLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPC 632 (1166)
Q Consensus 554 NEkLQ~~f~~~~F~~eq~ey~~EgI~~~~v~f~dn~~~ldLie~-p~Gll~lLDee~~~p~~td~~f~~kl~~~~~~~~~ 632 (1166)
||+||++||+|||..||+||..|+|+|..+.|.||..|+|+|.. |.||+.+||||+.||+++|.|++.|++.+++.+..
T Consensus 454 ne~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k~~~q~~~~~~ 533 (1062)
T KOG4229|consen 454 NEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLKLNMQHGSNNL 533 (1062)
T ss_pred HHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHHHHHHhhhhhhcccc
Confidence 99999999999999999999999999999999999999999998 99999999999999999999999999999987665
Q ss_pred cccC---CCCCeEEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcchhHHhhcccc--------------------
Q 001068 633 FRGE---RDKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHLPQIFASNML-------------------- 689 (1166)
Q Consensus 633 f~~~---~~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~s~~~l~~lf~~~~~-------------------- 689 (1166)
|..+ ....|+|.||||.|.|++.||++||+|.++.|+..++.+|...+...+.....
T Consensus 534 y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~~~~~ 613 (1062)
T KOG4229|consen 534 YVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRWFELRALKVAMPVPL 613 (1062)
T ss_pred cccccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcchhhhhhcccccccc
Confidence 5433 25799999999999999999999999999999999999987654332211000
Q ss_pred --------ccCCCCc---------------cC----CC------ccCCCCC-----------------C-----------
Q 001068 690 --------SQSNKPV---------------VG----PL------YKAGGAD-----------------S----------- 708 (1166)
Q Consensus 690 --------~~s~~~~---------------~~----~~------~~~~~~~-----------------~----------- 708 (1166)
..+..+. .+ |. .-.+|.. +
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~ 693 (1062)
T KOG4229|consen 614 EVTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSS 693 (1062)
T ss_pred hhhhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhh
Confidence 0000000 00 00 0001100 0
Q ss_pred --------CC-c--------------------------------------------------------------------
Q 001068 709 --------QK-L-------------------------------------------------------------------- 711 (1166)
Q Consensus 709 --------~~-~-------------------------------------------------------------------- 711 (1166)
.. .
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e 773 (1062)
T KOG4229|consen 694 RGSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRRE 773 (1062)
T ss_pred cccccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCccccc
Confidence 00 0
Q ss_pred cHHH----------------HHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCC
Q 001068 712 SVAT----------------KFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGF 775 (1166)
Q Consensus 712 tv~~----------------~fk~qL~~Lm~~L~~t~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gy 775 (1166)
.++. ++......++..+....|.|++|++-|..+....|+...|.+|+++.|+++..++++.+|
T Consensus 774 ~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~ 853 (1062)
T KOG4229|consen 774 RVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLY 853 (1062)
T ss_pred hhhhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccc
Confidence 0011 111122235555566678888888888777778899999999999999999999999999
Q ss_pred CCccChHHHHHHhhhhccccccCCChHHHHHHHHHHcCcCCcceeecceeeeeeeccccccccccccc-cc-chhhhhhh
Q 001068 776 PTRMSHQKFARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRT-LH-GILRVQSC 853 (1166)
Q Consensus 776 p~r~~~~eF~~RY~~L~~~~~~~~d~~~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R~~~-l~-aav~IQa~ 853 (1166)
+..+++.+|...+.++.+.... .........+......++.|.+++|+...-...++..-... .. .+...|++
T Consensus 854 ~~~i~~~~~~~~~~i~~~~~~~-----~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~ 928 (1062)
T KOG4229|consen 854 FAEISPQDSVNQSRIGLPETVD-----TVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKW 928 (1062)
T ss_pred cccccchhccccccccCCccch-----hhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHH
Confidence 9999999999999998883221 12222333334567789999999999876644443322111 11 25568999
Q ss_pred hcccccchhhhccchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHhhHHHHH
Q 001068 854 FRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRR 933 (1166)
Q Consensus 854 ~Rg~~aRr~y~~lr~aai~IQs~~RG~~aRr~y~~l~~r~~AAi~IQ~~~R~~~aRk~~~~~r~aai~IQs~~Rg~laRr 933 (1166)
++....++.+.++..+.+.+| |+++..|+.-.-......+|..+|..|+.+..+..+...+++.+.+|..+++...+.
T Consensus 929 ~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 1006 (1062)
T KOG4229|consen 929 FRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTM 1006 (1062)
T ss_pred HHhhhccccchhhcchhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhhh
Confidence 999999999999999999999 888888885443344567899999999999999999999999999999999887776
Q ss_pred HHHHh
Q 001068 934 CSGDI 938 (1166)
Q Consensus 934 ~~~~l 938 (1166)
.+...
T Consensus 1007 ~~~~~ 1011 (1062)
T KOG4229|consen 1007 IFAAD 1011 (1062)
T ss_pred hHHHh
Confidence 65443
No 23
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.71 E-value=1.7e-08 Score=107.52 Aligned_cols=86 Identities=27% Similarity=0.361 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhccCCCCc----hhhhhhhhHHHHhhc-CcccCCCCC
Q 001068 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGI----EYEILKTNPILEAFG-NAKTSRNDN 311 (1166)
Q Consensus 237 iyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~i----e~~il~snpiLEAFG-NAkT~~N~N 311 (1166)
||..+..++..|+ ++.|+||+..|+||||||.|+.--. ...++ -+.+++.....+++. +|.|.+|++
T Consensus 8 vf~~~~~~v~~~~-~G~n~~i~~yG~tGsGKT~Tm~G~~-------~~~Giip~~~~~~~~ll~~g~~~R~~~~t~~N~~ 79 (186)
T cd01363 8 VFRDVGPLLQSAL-DGYNVCIFAYGQTGSGKTYTMEGKR-------EGAGIIPRTVTDVIDLMDKGNANRTTAATAMNEH 79 (186)
T ss_pred HHHHHHHHHHHHh-CCcceeEEEECCCCCcceEecCCCC-------CCCCcchHHHHHHHHHHhhccccccccccCCCCc
Confidence 8888889999998 5799999999999999998865211 00111 123667888888999 999999999
Q ss_pred CCccccEEEEEEcCCCcee
Q 001068 312 SSRFGKLIEIHFSETGKIS 330 (1166)
Q Consensus 312 SSRfGk~i~l~F~~~g~i~ 330 (1166)
|||+..+++|++.......
T Consensus 80 SSRsH~i~~i~v~~~~~~~ 98 (186)
T cd01363 80 SSRSHSVFRIHFGGKNALA 98 (186)
T ss_pred cCcccEEEEEEEEEeecCC
Confidence 9999999999997654443
No 24
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.14 E-value=0.00014 Score=98.19 Aligned_cols=568 Identities=17% Similarity=0.152 Sum_probs=268.8
Q ss_pred eeeeeccccccccccCCCCcchhHHHHhcCCCHHh----HhhcCCCCccccccccCCCccCCCCcchHHHHHHHHHHHhh
Q 001068 334 IQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPAL----REKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDI 409 (1166)
Q Consensus 334 i~~yLLEKsRVv~q~~gERnfHIFYqLl~g~~~~~----r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~ 409 (1166)
...+....+..+.++++.++||-|+.+.-+..+.. .+.|.| ..++.+.|.. + ...|+-+-.-|.-
T Consensus 217 npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLL---EKsRv~~Q~~-----~---Er~yhiFyqlls~ 285 (1930)
T KOG0161|consen 217 NPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLL---EKSRVIRQAP-----G---ERNYHIFYQLLSG 285 (1930)
T ss_pred CchHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHH---HHhHhhccCc-----c---hhHHHHHHHHHhC
Confidence 33445557888999999999999999988765432 233333 2334444432 2 2334433333332
Q ss_pred cCCCHHHHHHHHHHHHHHHH-hcCeeeEEeCCCCcccc---CC---hhHHHHHHHHhCCCHHHHHHhHc--cceeeeCCc
Q 001068 410 VHVSKEDQESVFAMLAAVLW-LGNVSFTVIDNENHVEP---VA---DEGLITVAKLIGCDIGELKLALS--TRKMRVGND 480 (1166)
Q Consensus 410 lg~s~~e~~~i~~iLaAILh-LGni~F~~~~~~~~~~~---~~---~~~l~~aA~LLgv~~~~L~~~L~--~~~i~~~~e 480 (1166)
. ++......+ +-+ .-+..|...+ .. .+ .+ ...+..|-..||+++++....+. .-.+..|+-
T Consensus 286 ~--~~~l~~~l~-----L~~~~~~Y~f~~~~--~~-~i~g~dd~eef~~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~ 355 (1930)
T KOG0161|consen 286 A--DPELKEELL-----LSDNVKDYKFLSNG--ES-TIPGVDDAEEFQETDEAMDILGFSEEEKISIFRIVSAILHLGNI 355 (1930)
T ss_pred C--CHHHHHHHh-----hcccchhhhhhccc--cC-CCCCcchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcch
Confidence 2 222222211 000 0012222111 11 11 11 12456777899999998887653 222344443
Q ss_pred eEEecCCHHHHHHHH----HHHHHHH-HHHHHHHHHHHhhhhhcCCCCCCcceEEEeecccCcCCCCCChHHHHHhhhhh
Q 001068 481 TIVQNLTLSQATDTR----DALAKSI-YACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANE 555 (1166)
Q Consensus 481 ~~~~~lt~~qA~~~r----dalak~L-Y~~LF~wiV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNE 555 (1166)
.+...-..+||.-.. +..|.-| |...+-| +..+.+ .....+-.++.|+.. +| .++|=+
T Consensus 356 ~f~~~~~~~qa~~~~~~~a~ka~~llg~~~~~~~-----~al~~p----riKvg~e~v~k~q~~------~q--~~~~v~ 418 (1930)
T KOG0161|consen 356 KFKQEPREEQAEFDNTEVADKACHLLGINVEEFL-----KALLRP----RIKVGREWVSKAQNV------EQ--VLFAVE 418 (1930)
T ss_pred hhhccccccccCCCCchHHHHHHHHcCCCHHHHH-----HHhccc----ceeccchhhhhcchH------HH--HHHHHH
Confidence 333322334443222 2222211 2222222 222222 112333444555533 33 777888
Q ss_pred HHHHhHhhhhhHHHHHHHHhcCCcccccccCCcHhHHHhhcCCCccccccccccCCCCCChHH----H-HHHHHHHhCCC
Q 001068 556 RLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEKPLGLLSLLDEESTFPNGTDLT----F-ANKLKQHLNSN 630 (1166)
Q Consensus 556 kLQ~~f~~~~F~~eq~ey~~EgI~~~~v~f~dn~~~ldLie~p~Gll~lLDee~~~p~~td~~----f-~~kl~~~~~~~ 630 (1166)
-|...-+..+|.+ .-.+...+++|. .+-..+|.+++-|.+.+.-++ +=+. | .+||.+.++.|
T Consensus 419 alAk~lYerlF~w-lV~riN~sld~~----~~~~~fIgvLDiaGFEIfe~n--------SFEQLciNytnEkLQqfFnh~ 485 (1930)
T KOG0161|consen 419 ALAKALYERLFGW-LVKRINKSLDSK----QQRDYFIGVLDIAGFEIFEFN--------SFEQLCINYTNEKLQQFFNHH 485 (1930)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHhhhc----cccCCcceeeeeccccccCcC--------CHHHHHHHHHHHHHHhhhcch
Confidence 8888777888865 566778889887 455667777776554443221 1111 1 24565555433
Q ss_pred CCcccCC------CCCeEEEeecceeeecccchhhhccCcCcHHHHHHHhh-c-----C-c-chhHHhhccccccCCCCc
Q 001068 631 PCFRGER------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSS-C-----S-C-HLPQIFASNMLSQSNKPV 696 (1166)
Q Consensus 631 ~~f~~~~------~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~-s-----~-~-~l~~lf~~~~~~~s~~~~ 696 (1166)
- |.... +-++..-||+=+ .=.+.+-|+|=. -++.+|.. | + . .+-+++.... + .
T Consensus 486 m-FvlEqeeY~~EgIew~fidfG~D-lq~~idLIEkp~-----Gi~slLdEEc~~PkAtd~tf~~kL~~~~~-g--k--- 552 (1930)
T KOG0161|consen 486 M-FVLEQEEYQREGIEWDFIDFGLD-LQPTIDLIEKPM-----GILSLLDEECVVPKATDKTFLEKLCDQHL-G--K--- 552 (1930)
T ss_pred h-hhhhHHHHHHhCCceeeeccccc-hhhhHHHHhchh-----hHHHHHHHHHhcCCCccchHHHHHHHHhh-c--c---
Confidence 2 33211 346777777211 111122222211 22222211 0 0 0 1111221110 0 0
Q ss_pred cCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCC
Q 001068 697 VGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFP 776 (1166)
Q Consensus 697 ~~~~~~~~~~~~~~~tv~~~fk~qL~~Lm~~L~~t~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp 776 (1166)
.| ..+++. ..+....+....-+++ |+|.-++--.++..-....|+.+|+|++ .+.|...-+|
T Consensus 553 -~~-------~f~~~k-----~~~~~~~F~l~HyaG~--V~Y~~~~WL~Knkdpln~~v~~ll~~s~-~~~v~~l~~~-- 614 (1930)
T KOG0161|consen 553 -HP-------KFQKPK-----GKKAEAHFALVHYAGT--VDYNVDGWLEKNKDPLNDNVVSLLKQST-NKLVSSLFQD-- 614 (1930)
T ss_pred -Cc-------cccCcc-----cccchhhhheeeecce--eccCccchhhcCCCCchHHHHHHHHhcc-cHHHHHHhhh--
Confidence 01 111111 2223333333444444 9999999888888888899999999999 8888877666
Q ss_pred CccChHHHHHHhhhhccccccCCChHHHH-------HHHHHHcCcCCcceeecceeeeeeeccccccccc--cc-ccccc
Q 001068 777 TRMSHQKFARRYGFLLLESVASQDPLSVS-------VAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDT--RN-RTLHG 846 (1166)
Q Consensus 777 ~r~~~~eF~~RY~~L~~~~~~~~d~~~~~-------~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~--R~-~~l~a 846 (1166)
+..+..+..++.. ..... ...-+..| -.++..+.-....|. +-=|+.....-+.+..- +. .++.+
T Consensus 615 -~~~~~~~~~~~~~-~~~~K-~g~F~Tvs~~~keql~~Lm~~l~~T~phFv--RCiIPn~~K~~g~ld~~lvl~QLrcng 689 (1930)
T KOG0161|consen 615 -YAGAAAAAKGGEA-LKKTK-KGSFRTVSQLYKEQLNKLMTTLRSTHPHFV--RCIIPNEEKKPGKLDAPLVLNQLRCNG 689 (1930)
T ss_pred -hhccchhhhhhhh-hcccC-CcchhhHHHHHHHHHHHHHHHhccCCCcee--EEeccCccccccccCHHHHHHHhhccC
Confidence 7777777777765 21111 11111122 122223322111111 11111111111111100 00 01111
Q ss_pred hh-hhhhhhcccccchhhhccc-------------------hhhhhHHH----------------HHH-hHHHHHHHHHH
Q 001068 847 IL-RVQSCFRGHQARLCLKELR-------------------RGIVALQS----------------FIR-GEKIRKEYALV 889 (1166)
Q Consensus 847 av-~IQa~~Rg~~aRr~y~~lr-------------------~aai~IQs----------------~~R-G~~aRr~y~~l 889 (1166)
++ .|--|-.||-.|..|...+ .+...|.. ++| |.+++-.=.+.
T Consensus 690 VLEgIRicR~GfPnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd 769 (1930)
T KOG0161|consen 690 VLEGIRICRQGFPNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRD 769 (1930)
T ss_pred cHHHHHHHHhhCccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHH
Confidence 11 1222234444444332211 11111111 222 34444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchh---hHHHHHHHHhhHHHHHHHHHhhhhhhhhcccCchhHHHHHHHHHHHHHH
Q 001068 890 LQRHRAAVVIQRQIKSRVARQKLKNIKY---SSIMIQSVIRGWLVRRCSGDICLLKSVESKGNDSDEVLVKASFLAELQR 966 (1166)
Q Consensus 890 ~~r~~AAi~IQ~~~R~~~aRk~~~~~r~---aai~IQs~~Rg~laRr~~~~lr~~~~~~~~~~~~~~l~~~~~~l~~Lq~ 966 (1166)
.....-.+.+|+.+|||++|+.|.+... ++..||..+|.|+..|.+.+.+...+ +++. -
T Consensus 770 ~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~~Lf~k------------vkPL------L 831 (1930)
T KOG0161|consen 770 EKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPWWRLFTK------------VKPL------L 831 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHH------------HHHH------H
Confidence 3344568889999999999999987744 88999999999999998888776654 1111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001068 967 RVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSM 1006 (1166)
Q Consensus 967 r~~k~e~~l~ekeeen~~L~~eL~~~e~r~~E~e~~~~~~ 1006 (1166)
.+.+-+.++.+++++...++.+++..+....+++..+..+
T Consensus 832 ~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~ 871 (1930)
T KOG0161|consen 832 KVTKTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKL 871 (1930)
T ss_pred HhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333444445555555555555555555544444333
No 25
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=97.87 E-value=3.8e-05 Score=61.71 Aligned_cols=41 Identities=22% Similarity=0.460 Sum_probs=38.1
Q ss_pred cEEEEecCCCCEEeEEEEEecCCeeEEEcCCCcEEEEeCCC
Q 001068 120 LQSWFQLPNGNWELGKILSISGTESVISLPEGKVLKVKSEN 160 (1166)
Q Consensus 120 ~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~ 160 (1166)
..||+|+++++|+.|+|++..+++++|.+.+|+.++|+.++
T Consensus 2 ~~vWvpD~~egfv~g~I~~~~g~~vtV~~~~G~~~tv~~dd 42 (42)
T PF02736_consen 2 KWVWVPDPKEGFVKGEIIEEEGDKVTVKTEDGKEVTVKKDD 42 (42)
T ss_dssp TEEEEEESSSSEEEEEEEEEESSEEEEEETTTEEEEEEGGG
T ss_pred CEEEEeCCcccEEEEEEEEEcCCEEEEEECCCCEEEeCCCC
Confidence 37999999999999999999999999999999999998764
No 26
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.55 E-value=6.2e-05 Score=94.73 Aligned_cols=94 Identities=20% Similarity=0.227 Sum_probs=66.5
Q ss_pred cchhhhhhhhcccccchhhhccchhhhhHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH------
Q 001068 845 HGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQ-------RHRAAVVIQRQIKSRVARQK------ 911 (1166)
Q Consensus 845 ~aav~IQa~~Rg~~aRr~y~~lr~aai~IQs~~RG~~aRr~y~~l~~-------r~~AAi~IQ~~~R~~~aRk~------ 911 (1166)
.++..||..||||+.|+.|..++.-++.||+.+||+..|+.|.++.- ---++..+|+.+|+|..|..
T Consensus 811 ~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~ 890 (975)
T KOG0520|consen 811 AAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQET 890 (975)
T ss_pred hHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhcccc
Confidence 45679999999999999999999999999999999999999966421 12244555555555554443
Q ss_pred -------------------hhhchhhHHHHHHHHhhHHHHHHHHHh
Q 001068 912 -------------------LKNIKYSSIMIQSVIRGWLVRRCSGDI 938 (1166)
Q Consensus 912 -------------------~~~~r~aai~IQs~~Rg~laRr~~~~l 938 (1166)
|.++-+|+++||+.+|.+.+|..|+++
T Consensus 891 a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~ 936 (975)
T KOG0520|consen 891 AATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRL 936 (975)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 444445666666666666666555544
No 27
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.47 E-value=0.001 Score=84.12 Aligned_cols=75 Identities=27% Similarity=0.307 Sum_probs=63.7
Q ss_pred hccchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHhhHHHHHHHHHhhhhh
Q 001068 864 KELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLLK 942 (1166)
Q Consensus 864 ~~lr~aai~IQs~~RG~~aRr~y~~l~~r~~AAi~IQ~~~R~~~aRk~~~~~r~aai~IQs~~Rg~laRr~~~~lr~~~ 942 (1166)
..+..+++.||+.+|||..|+.|..+ +++++.||+.+||+++|+... ...|++.||..+|+++.|+.|..++...
T Consensus 670 ~vl~~~~~~iq~~~r~~~~r~~f~~~---r~~~~~~Q~~~rG~~~r~~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~ 744 (862)
T KOG0160|consen 670 DVLSAAKVLIQRQIRGYLARKKFLQL---RSAVIIIQAYSRGVLARRETE-REAAAIGIQKECRSYLNRRRYRALIPAS 744 (862)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhhHHHHHHhhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33456788899999999999999654 489999999999999998444 5678999999999999999998876553
No 28
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.86 E-value=0.0058 Score=79.40 Aligned_cols=147 Identities=19% Similarity=0.193 Sum_probs=84.8
Q ss_pred hhhhhhcccccchhhhcc-------chhhhhHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh-
Q 001068 849 RVQSCFRGHQARLCLKEL-------RRGIVALQSFIRGEKI---RKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKY- 917 (1166)
Q Consensus 849 ~IQa~~Rg~~aRr~y~~l-------r~aai~IQs~~RG~~a---Rr~y~~l~~r~~AAi~IQ~~~R~~~aRk~~~~~r~- 917 (1166)
++|+..||+..|..+... --.+..||++|||++. +..|- .....-++.+|+..|++.+|+.|....+
T Consensus 540 ~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~--~~~~~evv~~qs~~R~~lsrk~~~~~~q~ 617 (1401)
T KOG2128|consen 540 RIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYL--DSAKKEVVKFQSLTRGALSRKKYSRKLQY 617 (1401)
T ss_pred hhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHH--HHhhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 348888888877765432 2457788888888874 11111 1123457888888888888887766533
Q ss_pred ------hHHHHHHHHhhHHHHHHHHHhhhhhhh-hcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001068 918 ------SSIMIQSVIRGWLVRRCSGDICLLKSV-ESKGNDSDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQ 990 (1166)
Q Consensus 918 ------aai~IQs~~Rg~laRr~~~~lr~~~~~-~~~~~~~~~l~~~~~~l~~Lq~r~~k~e~~l~ekeeen~~L~~eL~ 990 (1166)
.++.||+.+|..+.|..|..+.-...- ....+....+........+.+..+++...++..+-..|.+|+..+.
T Consensus 618 ~~~~~~~~i~iqs~~r~f~~r~~y~~L~~s~npsl~~vrkFV~lld~~~~df~~e~~le~lr~eIsrk~~sne~Lekdi~ 697 (1401)
T KOG2128|consen 618 FKDNMTKIIKIQSKIRKFPNRKDYKLLFTSENPSLETVRKFVHLLDQTDVDFEEELELEKLREEISRKIRSNEQLEKDIN 697 (1401)
T ss_pred HHHhhhhHHHHHHHHHhcccchHHHHHhcCCCCchhhHHhhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999988877654321 1111111111112222233344444445555555555555555554
Q ss_pred HHHHHHH
Q 001068 991 QYESRWS 997 (1166)
Q Consensus 991 ~~e~r~~ 997 (1166)
++..++.
T Consensus 698 ~md~kIg 704 (1401)
T KOG2128|consen 698 EMDEKIG 704 (1401)
T ss_pred HHHHHHh
Confidence 4444433
No 29
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.71 E-value=0.0018 Score=44.15 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 001068 894 RAAVVIQRQIKSRVARQKL 912 (1166)
Q Consensus 894 ~AAi~IQ~~~R~~~aRk~~ 912 (1166)
+||++||+.||||++|+.|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3455555555555555444
No 30
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.44 E-value=0.0028 Score=43.18 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=17.8
Q ss_pred hhhhhHHHHHHhHHHHHHHH
Q 001068 868 RGIVALQSFIRGEKIRKEYA 887 (1166)
Q Consensus 868 ~aai~IQs~~RG~~aRr~y~ 887 (1166)
++++.||++|||+++|+.|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999883
No 31
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=96.40 E-value=0.056 Score=71.12 Aligned_cols=99 Identities=21% Similarity=0.219 Sum_probs=85.9
Q ss_pred ccchhhhhhhhcccccchhhhccchhhhhHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHH
Q 001068 844 LHGILRVQSCFRGHQARLCLKELRRGIVALQ-SFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMI 922 (1166)
Q Consensus 844 l~aav~IQa~~Rg~~aRr~y~~lr~aai~IQ-s~~RG~~aRr~y~~l~~r~~AAi~IQ~~~R~~~aRk~~~~~r~aai~I 922 (1166)
....+.+|..|+....|..|+.....++.+| ..+|....+..+.... .++|++.+|+.||.+..+++|..+.+..+.+
T Consensus 793 ~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~-~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~ 871 (1463)
T COG5022 793 WRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEF-SLKAEVLIQKFGRSLKAKKRFSLLKKETIYL 871 (1463)
T ss_pred HHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHhhhhhHHHHHhhhHHHHH
Confidence 3567899999999999999999999999999 7777777776544433 5689999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHhhhhhh
Q 001068 923 QSVIRGWLVRRCSGDICLLKS 943 (1166)
Q Consensus 923 Qs~~Rg~laRr~~~~lr~~~~ 943 (1166)
|+.+|.-.++|.+..++...+
T Consensus 872 ~~~~r~~~a~r~~~e~k~~~~ 892 (1463)
T COG5022 872 QSAQRVELAERQLQELKIDVK 892 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999988776544
No 32
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.33 E-value=0.0046 Score=74.92 Aligned_cols=61 Identities=25% Similarity=0.177 Sum_probs=47.7
Q ss_pred cchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHhhHHHHHHHHH
Q 001068 866 LRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGD 937 (1166)
Q Consensus 866 lr~aai~IQs~~RG~~aRr~y~~l~~r~~AAi~IQ~~~R~~~aRk~~~~~r~aai~IQs~~Rg~laRr~~~~ 937 (1166)
+..-++.||+.|||+++|.+|++++ .++++|+ +||.|.. +..+..||..+||+..++.|.+
T Consensus 695 l~~lvtllQK~~RG~~~R~ry~rmk---a~~~ii~-wyR~~K~-------ks~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 695 LPSLVTLLQKAWRGWLARQRYRRMK---ASATIIR-WYRRYKL-------KSYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HHHHHHH-------HHHHHHHHHHHHhhhhccccCC
Confidence 3456899999999999999997765 5666666 8885433 4466789999999998887754
No 33
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.92 E-value=0.0061 Score=71.49 Aligned_cols=65 Identities=29% Similarity=0.382 Sum_probs=47.0
Q ss_pred EeCCCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHH-HHHHHH
Q 001068 209 AINPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI-AMQYLA 279 (1166)
Q Consensus 209 avNP~k~l~iY~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~-il~yLa 279 (1166)
++|||...| |++.+-..++.+...|-|-| -+..|-.-..||+||++||.|||||+-.-. ++.|-.
T Consensus 23 ~~Npf~~~p-~s~rY~~ilk~R~~LPvw~~-----k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~ 88 (699)
T KOG0925|consen 23 AINPFNGKP-YSQRYYDILKKRRELPVWEQ-----KEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYEL 88 (699)
T ss_pred hcCCCCCCc-CcHHHHHHHHHHhcCchHHh-----HHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHH
Confidence 499999998 78888877776665554433 344555566799999999999999986433 444433
No 34
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=95.36 E-value=0.05 Score=69.52 Aligned_cols=49 Identities=24% Similarity=0.348 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHhhHHHHHHHHHhhhh
Q 001068 893 HRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLL 941 (1166)
Q Consensus 893 ~~AAi~IQ~~~R~~~aRk~~~~~r~aai~IQs~~Rg~laRr~~~~lr~~ 941 (1166)
..||..||..+|+|..|+.|..++.-++.||+++||+..|+.|+++-..
T Consensus 810 ~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wS 858 (975)
T KOG0520|consen 810 PAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWS 858 (975)
T ss_pred hhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechh
Confidence 4689999999999999999999999999999999999999999887554
No 35
>PTZ00014 myosin-A; Provisional
Probab=95.09 E-value=0.04 Score=71.05 Aligned_cols=42 Identities=21% Similarity=0.166 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHhhHHHHHH
Q 001068 893 HRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRC 934 (1166)
Q Consensus 893 ~~AAi~IQ~~~R~~~aRk~~~~~r~aai~IQs~~Rg~laRr~ 934 (1166)
...+..||++||+|++|++|.+.+.+++.||+.+|+|++++.
T Consensus 777 ~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 777 EPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 357899999999999999999999999999999999998874
No 36
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.82 E-value=0.021 Score=55.78 Aligned_cols=23 Identities=48% Similarity=0.612 Sum_probs=21.3
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1166)
.|+|+|.||||||+.++.+.+.|
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999876
No 37
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.78 E-value=0.024 Score=40.71 Aligned_cols=19 Identities=37% Similarity=0.600 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 001068 894 RAAVVIQRQIKSRVARQKL 912 (1166)
Q Consensus 894 ~AAi~IQ~~~R~~~aRk~~ 912 (1166)
.+|+.||+.||||++|+.|
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4555555555555555555
No 38
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=94.37 E-value=2.4 Score=52.63 Aligned_cols=28 Identities=29% Similarity=0.280 Sum_probs=21.5
Q ss_pred chhhhhhhhcccccchhhhccchhhhhH
Q 001068 846 GILRVQSCFRGHQARLCLKELRRGIVAL 873 (1166)
Q Consensus 846 aav~IQa~~Rg~~aRr~y~~lr~aai~I 873 (1166)
.++++|++.|||++|++++..-..+..+
T Consensus 815 ~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~ 842 (1259)
T KOG0163|consen 815 CVLKAQRIARGYLARKRHRPRIAGIRKI 842 (1259)
T ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHH
Confidence 4678999999999999987655444433
No 39
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.35 E-value=0.045 Score=39.26 Aligned_cols=19 Identities=37% Similarity=0.545 Sum_probs=10.6
Q ss_pred hhhhhHHHHHHhHHHHHHH
Q 001068 868 RGIVALQSFIRGEKIRKEY 886 (1166)
Q Consensus 868 ~aai~IQs~~RG~~aRr~y 886 (1166)
.+++.||++|||+++|+.|
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4555555555555555544
No 40
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=93.68 E-value=0.048 Score=53.89 Aligned_cols=29 Identities=34% Similarity=0.487 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
+...+++|+|++|+|||..++.+++-+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 35688999999999999999999887764
No 41
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=93.62 E-value=0.048 Score=57.06 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=23.3
Q ss_pred HHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 248 m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
+...+....|+|.|++|+|||...+.+++++..-
T Consensus 18 ~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 18 AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3456778999999999999999999999888763
No 42
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.62 E-value=0.05 Score=53.29 Aligned_cols=22 Identities=50% Similarity=0.519 Sum_probs=21.0
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 001068 257 IIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yL 278 (1166)
|+|+|.+|||||+.++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999986
No 43
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.43 E-value=0.094 Score=51.60 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=26.3
Q ss_pred HHcCceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 249 ~~~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
.......+|+|.|++|+|||+.++.+.+.+.
T Consensus 14 ~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 14 LELPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred HhCCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 3344567999999999999999999998876
No 44
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.20 E-value=0.14 Score=57.49 Aligned_cols=28 Identities=36% Similarity=0.504 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
.....++|+|++|+|||+.++.+...+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3356899999999999999999876654
No 45
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.11 E-value=0.067 Score=56.32 Aligned_cols=25 Identities=40% Similarity=0.457 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
+.|+|+|.||||||+.++.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999998877653
No 46
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=92.78 E-value=0.36 Score=63.60 Aligned_cols=74 Identities=26% Similarity=0.337 Sum_probs=60.8
Q ss_pred ccchhhhhhhhccccc----chhhhccchhhhhHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhc
Q 001068 844 LHGILRVQSCFRGHQA----RLCLKELRRGIVALQSFIRGEKIRKEYALVLQ----RHRAAVVIQRQIKSRVARQKLKNI 915 (1166)
Q Consensus 844 l~aav~IQa~~Rg~~a----Rr~y~~lr~aai~IQs~~RG~~aRr~y~~l~~----r~~AAi~IQ~~~R~~~aRk~~~~~ 915 (1166)
...+..||+.|||++. ...+.....-++.+|++.||+.+|+.|.+..+ ...+++.||+++|....|..|..+
T Consensus 565 ~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L 644 (1401)
T KOG2128|consen 565 TPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLL 644 (1401)
T ss_pred CchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHH
Confidence 3467789999999985 22334566789999999999999999977655 456899999999999999999987
Q ss_pred hh
Q 001068 916 KY 917 (1166)
Q Consensus 916 r~ 917 (1166)
..
T Consensus 645 ~~ 646 (1401)
T KOG2128|consen 645 FT 646 (1401)
T ss_pred hc
Confidence 54
No 47
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=92.76 E-value=0.097 Score=46.59 Aligned_cols=22 Identities=45% Similarity=0.625 Sum_probs=20.9
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 001068 257 IIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yL 278 (1166)
|.|+|.+|||||+.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 48
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=92.36 E-value=0.093 Score=51.56 Aligned_cols=23 Identities=43% Similarity=0.745 Sum_probs=21.7
Q ss_pred EEEcCCCCCChhHHHHHHHHHHH
Q 001068 257 IIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa 279 (1166)
|+|.|++|+|||+.++.+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 79999999999999999999974
No 49
>PRK05480 uridine/cytidine kinase; Provisional
Probab=92.25 E-value=0.12 Score=55.90 Aligned_cols=27 Identities=37% Similarity=0.388 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.+.--|.|+|.||||||+.++.|.+.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998876
No 50
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.21 E-value=0.1 Score=56.29 Aligned_cols=25 Identities=24% Similarity=0.635 Sum_probs=22.7
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 256 SIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.|+|+|++|||||++.+.++.++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999999999988764
No 51
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.13 E-value=0.16 Score=58.95 Aligned_cols=35 Identities=37% Similarity=0.593 Sum_probs=28.7
Q ss_pred HHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
....++..+. .|||+|..|||||++++.++.++..
T Consensus 136 ~L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 136 VIRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3456666665 5999999999999999999998864
No 52
>PRK06696 uridine kinase; Validated
Probab=92.06 E-value=0.19 Score=55.18 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 239 AITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 239 avA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.+|+..+.. ..+.+--|.|+|.||||||+.++.|.+.|..
T Consensus 9 ~la~~~~~~--~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 9 ELAEHILTL--NLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHh--CCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344544431 3556788999999999999999999998864
No 53
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=91.97 E-value=0.17 Score=52.60 Aligned_cols=29 Identities=38% Similarity=0.429 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
.-.|.|+|.||||||+.++.+-+.|-..+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g 30 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG 30 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 45799999999999999999999998765
No 54
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=91.88 E-value=0.11 Score=55.64 Aligned_cols=26 Identities=50% Similarity=0.546 Sum_probs=23.6
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 257 IIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
|-|+|.||||||+.++.+...|...+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~~ 27 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKRG 27 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccC
Confidence 77999999999999999999998654
No 55
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=91.88 E-value=0.1 Score=50.68 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=24.6
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
.+.|+|.|.+|+|||+.++.+...+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999998877654
No 56
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.78 E-value=0.13 Score=49.97 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCChhHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il 275 (1166)
..+.+.|.|+||||||+.++.++
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 35789999999999999999975
No 57
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=91.73 E-value=0.19 Score=56.90 Aligned_cols=35 Identities=29% Similarity=0.521 Sum_probs=27.4
Q ss_pred HHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 245 y~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
+..++... .-.|+|+|++|||||++.+.++.++..
T Consensus 72 l~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 72 FRKLLEKP-HGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred HHHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 45555433 346999999999999999999998854
No 58
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=91.71 E-value=0.14 Score=52.80 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~y 277 (1166)
...|+|+|+|||||||.+..+++.
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 688999999999999999877764
No 59
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.69 E-value=0.12 Score=55.67 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.|+|.|.||||||+.++.+.+.+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46789999999999999999998875
No 60
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=91.59 E-value=0.38 Score=53.04 Aligned_cols=35 Identities=26% Similarity=0.280 Sum_probs=29.9
Q ss_pred HcCceEEEEEcCCCCCChhHHHHHHHHHHHhccCC
Q 001068 250 RDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG 284 (1166)
Q Consensus 250 ~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~ 284 (1166)
..+.+.-|.|+|.||||||+.++.+...|...++.
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~ 63 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGEL 63 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence 34678899999999999999999999998876653
No 61
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.57 E-value=0.13 Score=55.09 Aligned_cols=22 Identities=45% Similarity=0.593 Sum_probs=20.2
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 001068 257 IIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yL 278 (1166)
|.|+|.||||||+.++.+...|
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998877
No 62
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=91.52 E-value=0.17 Score=54.84 Aligned_cols=28 Identities=36% Similarity=0.392 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
.+...|.|+|.||||||+.++.+...|.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567788999999999999998877654
No 63
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.49 E-value=0.27 Score=49.79 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
.....|+++|+.|||||+.+|.+++.|-
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3456899999999999999999988763
No 64
>PRK08233 hypothetical protein; Provisional
Probab=91.43 E-value=0.12 Score=54.17 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
.-|.|+|.||||||+.++.+..+|.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5688999999999999999887764
No 65
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=91.35 E-value=0.14 Score=54.39 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
-.-|||||.||+|||+.+|.++.-.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4568999999999999999998765
No 66
>PRK06762 hypothetical protein; Provisional
Probab=91.22 E-value=0.18 Score=52.37 Aligned_cols=25 Identities=48% Similarity=0.595 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+..|+|+|.+|||||+.++.+.++|
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999888
No 67
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.18 E-value=0.13 Score=58.90 Aligned_cols=28 Identities=39% Similarity=0.488 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
++.+.+=|.||||||||++++-||..|-
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 3567888999999999999999999885
No 68
>PRK05541 adenylylsulfate kinase; Provisional
Probab=91.11 E-value=0.15 Score=53.56 Aligned_cols=29 Identities=34% Similarity=0.376 Sum_probs=25.6
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
..+..|+|+|.||||||+.++.+...|..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999988864
No 69
>PF12846 AAA_10: AAA-like domain
Probab=91.03 E-value=0.18 Score=56.98 Aligned_cols=30 Identities=33% Similarity=0.463 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1166)
|..++|.|.||||||++++.++..++..+.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~ 30 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGP 30 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCC
Confidence 567999999999999999999998888663
No 70
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=91.02 E-value=0.31 Score=53.06 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 242 DTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 242 ~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
-.+.+.+.....+..|+|.|++|+|||..++.+.+++..
T Consensus 26 ~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 26 LAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred HHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 334445544667889999999999999999999988764
No 71
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=90.86 E-value=0.16 Score=52.63 Aligned_cols=23 Identities=52% Similarity=0.660 Sum_probs=20.8
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1166)
-|+|+|++|||||+.++.+.+.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998765
No 72
>PTZ00301 uridine kinase; Provisional
Probab=90.83 E-value=0.18 Score=55.10 Aligned_cols=24 Identities=42% Similarity=0.484 Sum_probs=20.7
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHh
Q 001068 257 IIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa~ 280 (1166)
|-|+|.||||||+.++.|.+-|..
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l~~ 29 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELMA 29 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHHHh
Confidence 668999999999999998877643
No 73
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=90.82 E-value=0.26 Score=56.72 Aligned_cols=34 Identities=29% Similarity=0.535 Sum_probs=27.7
Q ss_pred HHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 245 y~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
...++..+ ..|+|+|.+|||||+.++.++.++..
T Consensus 125 L~~~v~~~--~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 125 LREAVLAR--KNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred HHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 34445444 57999999999999999999999876
No 74
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=90.74 E-value=0.19 Score=50.60 Aligned_cols=22 Identities=41% Similarity=0.662 Sum_probs=20.3
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 001068 257 IIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yL 278 (1166)
|+|+|.+|||||+.++.+...|
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998765
No 75
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=90.67 E-value=0.19 Score=53.36 Aligned_cols=24 Identities=42% Similarity=0.461 Sum_probs=22.0
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHh
Q 001068 257 IIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa~ 280 (1166)
|.|+|.||||||+.++.+...|..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999988864
No 76
>PRK06547 hypothetical protein; Provisional
Probab=90.58 E-value=0.36 Score=51.05 Aligned_cols=29 Identities=28% Similarity=0.286 Sum_probs=24.8
Q ss_pred HcCceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 250 RDEVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 250 ~~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
......-|+|+|.||||||+.++.+.+.+
T Consensus 11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 11 CGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred hcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35667889999999999999999988764
No 77
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=90.57 E-value=0.19 Score=55.27 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.3
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHh
Q 001068 257 IIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa~ 280 (1166)
|-|+|.||||||+.++.|...|..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhh
Confidence 568999999999999999888764
No 78
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.56 E-value=4.8 Score=46.97 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=18.8
Q ss_pred CChHHHHHHHHHHHHHHhHHHhhh
Q 001068 1109 NPDKELRRLKQMFEAWKKDYGSRL 1132 (1166)
Q Consensus 1109 ~~~~El~~Lk~~f~~wkkd~~~rl 1132 (1166)
-...|+.+||.+|+.+.+--+-++
T Consensus 273 ~t~~Ev~~Lk~~~~~Le~~~gw~~ 296 (325)
T PF08317_consen 273 WTRSEVKRLKAKVDALEKLTGWKI 296 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHHCcEE
Confidence 578899999999998877655444
No 79
>PRK07261 topology modulation protein; Provisional
Probab=90.52 E-value=0.19 Score=52.87 Aligned_cols=23 Identities=39% Similarity=0.437 Sum_probs=19.7
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1166)
-|+|.|.||||||+.++.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999885543
No 80
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=90.48 E-value=0.44 Score=57.40 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=33.9
Q ss_pred chhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 236 HVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 236 HiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
.++.+.-.|...++.-.+.|.+.|.|.||+|||+..++|+.+
T Consensus 137 ~~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 137 TPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred cccccceeeccceEeEecceEEEEECCCCCCccHHHHHHhcc
Confidence 344555667888877788999999999999999998877654
No 81
>PRK00131 aroK shikimate kinase; Reviewed
Probab=90.41 E-value=0.22 Score=51.61 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.+..|+|+|.+|||||+.++.+-+.|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998877
No 82
>PF13245 AAA_19: Part of AAA domain
Probab=90.27 E-value=0.33 Score=44.23 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.+...+|.|..|||||++...++.++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4666778999999999999998888885
No 83
>PRK08118 topology modulation protein; Reviewed
Probab=90.26 E-value=0.22 Score=52.26 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
+-|+|.|.+|||||+.++.+-+.+-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999987753
No 84
>PF05729 NACHT: NACHT domain
Probab=90.26 E-value=0.24 Score=50.58 Aligned_cols=27 Identities=37% Similarity=0.442 Sum_probs=23.9
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
-++|+|+.|+|||+.++.++..++...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 479999999999999999999888744
No 85
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=90.17 E-value=0.25 Score=52.12 Aligned_cols=25 Identities=40% Similarity=0.595 Sum_probs=22.7
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 256 SIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
++++.|.||.|||++++.+-++|-.
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 6899999999999999999999883
No 86
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.17 E-value=0.19 Score=53.61 Aligned_cols=26 Identities=31% Similarity=0.641 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
...|+|+|++|||||++.+.++.++-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 46799999999999999999988764
No 87
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=89.92 E-value=0.54 Score=53.85 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=25.6
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
.+.+.-|-|+|.||||||++++.+...|...
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~ 89 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRW 89 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 3557778899999999999999887777654
No 88
>PRK08084 DNA replication initiation factor; Provisional
Probab=89.90 E-value=0.46 Score=52.67 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=31.9
Q ss_pred HHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 241 TDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 241 A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
|-.+.+.+.......+++|.|++|+|||+.+..+.+++...
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~ 72 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR 72 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34455556555566799999999999999999888887753
No 89
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=89.85 E-value=0.26 Score=51.93 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.+-|+++|-||||||+.+|.+.+-+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3579999999999999999887654
No 90
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=89.80 E-value=0.22 Score=58.39 Aligned_cols=35 Identities=26% Similarity=0.562 Sum_probs=27.2
Q ss_pred HHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 245 y~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
+..+.. .....|+|+|++|||||++.+.++.++..
T Consensus 114 l~~~~~-~~~g~ili~G~tGSGKTT~l~al~~~i~~ 148 (343)
T TIGR01420 114 LRELAE-RPRGLILVTGPTGSGKSTTLASMIDYINK 148 (343)
T ss_pred HHHHHh-hcCcEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 444443 23577999999999999999999988754
No 91
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=89.67 E-value=0.29 Score=57.42 Aligned_cols=31 Identities=19% Similarity=0.450 Sum_probs=25.1
Q ss_pred HHHHcCceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 247 EMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 247 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
.+++.+ ..|+|+|.+|||||+.++.++.++-
T Consensus 157 ~~v~~~--~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 157 ACVVGR--LTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred HHHHcC--CeEEEECCCCccHHHHHHHHHcccC
Confidence 344444 5599999999999999999988864
No 92
>PRK14737 gmk guanylate kinase; Provisional
Probab=89.66 E-value=0.23 Score=53.18 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+--|||+|.||||||+.++.+++.+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4569999999999999999998754
No 93
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=89.60 E-value=0.2 Score=53.31 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCChhHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~y 277 (1166)
+.|+|+|.||||||+..+.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 57999999999999999988543
No 94
>PRK00889 adenylylsulfate kinase; Provisional
Probab=89.56 E-value=0.38 Score=50.47 Aligned_cols=29 Identities=31% Similarity=0.381 Sum_probs=25.7
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
....|+|.|.+|||||+.++.+...|...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999999753
No 95
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=89.51 E-value=0.22 Score=50.58 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=20.4
Q ss_pred EEEcCCCCCChhHHHHHHHHHHH
Q 001068 257 IIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa 279 (1166)
|+|.|.||||||+.++.+++.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 78999999999999999988753
No 96
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=89.51 E-value=0.34 Score=56.93 Aligned_cols=37 Identities=32% Similarity=0.570 Sum_probs=30.2
Q ss_pred HHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
++........+.+|+|+|++|+|||.+++.+++.|..
T Consensus 30 ~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 30 ALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred HHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3444445677889999999999999999999988864
No 97
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=89.37 E-value=0.29 Score=51.60 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=21.6
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHh
Q 001068 257 IIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa~ 280 (1166)
|+|+|++|+|||+..+.++++|..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 899999999999999999999865
No 98
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=89.35 E-value=0.21 Score=51.66 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.1
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 001068 257 IIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yL 278 (1166)
|+|.|.||||||+.++.+-+.|
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 6899999999999999998876
No 99
>PRK14738 gmk guanylate kinase; Provisional
Probab=89.26 E-value=0.28 Score=53.24 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.-|||+|.||||||+.++.+++.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35688999999999999988887654
No 100
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=89.18 E-value=0.26 Score=52.86 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=19.6
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 001068 257 IIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yL 278 (1166)
|.|+|-||||||+.++.+.+.|
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999887764
No 101
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=89.14 E-value=0.28 Score=57.94 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=25.9
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
...-|+|+|++|||||++.+.+++++...
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~ 161 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEA 161 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 46789999999999999999999998753
No 102
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=89.12 E-value=5 Score=50.28 Aligned_cols=62 Identities=26% Similarity=0.298 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhhhccccccceeeccCcccccCCCChHHHHHHH-----------------HHHHHHHhHHHhh---hHHH
Q 001068 1076 SRLAEEFDQRSQVFGDDAKFLVEVKSGQVEASLNPDKELRRLK-----------------QMFEAWKKDYGSR---LRET 1135 (1166)
Q Consensus 1076 ~~L~~Efe~r~q~f~~~a~~l~E~~~~~~~~~~~~~~El~~Lk-----------------~~f~~wkkd~~~r---lr~~ 1135 (1166)
+.+..|+|+++.....|++.|.|++. |-..||++|+ -+|+.-|||-.+- |-||
T Consensus 350 ddk~~eLEKkrd~al~dvr~i~e~k~-------nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a 422 (1265)
T KOG0976|consen 350 DDKLNELEKKRDMALMDVRSIQEKKE-------NVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEA 422 (1265)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHH
Confidence 44577888888888888888888887 5566666665 2577788887653 6666
Q ss_pred HHHHhhhcC
Q 001068 1136 KVILNKLGS 1144 (1166)
Q Consensus 1136 k~~l~~~~~ 1144 (1166)
--.|+++|.
T Consensus 423 ~ekld~mgt 431 (1265)
T KOG0976|consen 423 LEKLDLMGT 431 (1265)
T ss_pred HHHHHHHhH
Confidence 666766654
No 103
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=89.08 E-value=0.3 Score=47.24 Aligned_cols=25 Identities=36% Similarity=0.357 Sum_probs=22.4
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 257 IIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
|.|.|++|.|||..++.++++|...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999888753
No 104
>PRK03846 adenylylsulfate kinase; Provisional
Probab=89.07 E-value=0.51 Score=50.80 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=27.8
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
..++..|+|+|.||||||+.++.+...|...+
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~ 52 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELG 52 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 45678999999999999999999999886544
No 105
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=89.07 E-value=0.27 Score=55.68 Aligned_cols=20 Identities=40% Similarity=0.642 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCChhHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIA 274 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~i 274 (1166)
+-|||||-||||||++.+.+
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l 21 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL 21 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH
Confidence 56999999999999987765
No 106
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=89.05 E-value=26 Score=40.25 Aligned_cols=91 Identities=20% Similarity=0.172 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhccccccccccccCCCCcccccccccCCCccC
Q 001068 983 DILHQRLQQYESRWSEYEQKMKSMEEV----WQKQMRSLQSSLSIAKKSLAIDDSERNSDASVNASDEVEYSWDTGSNCK 1058 (1166)
Q Consensus 983 ~~L~~eL~~~e~r~~E~e~~~~~~ee~----lqkq~~~LQ~~l~~lk~~Le~~e~~r~~~~~~~~~~~~d~~~~~~s~~~ 1058 (1166)
..++..+.++.....++|..+...++. ++++|..|..+...++..|+..-. .++.|.+....+..
T Consensus 152 ~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s-----~~~s~~d~~~~~~~------ 220 (310)
T PF09755_consen 152 SAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVS-----APPSPRDTVNVSEE------ 220 (310)
T ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-----CCCCcchHHhhccc------
Confidence 334444455555555555555554443 688888888888888888764211 11111111100000
Q ss_pred CCCCCCCccCCCcchHHHHHHHHHHHhhhhcc
Q 001068 1059 GQESNGVRPMSAGLSVISRLAEEFDQRSQVFG 1090 (1166)
Q Consensus 1059 ~s~~~~~~~~~~~~s~v~~L~~Efe~r~q~f~ 1090 (1166)
...+....+.|..|..|..+.++++.
T Consensus 221 ------~Dt~e~~~shI~~Lr~EV~RLR~qL~ 246 (310)
T PF09755_consen 221 ------NDTAERLSSHIRSLRQEVSRLRQQLA 246 (310)
T ss_pred ------CCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 11133455678888888888777663
No 107
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=89.02 E-value=0.39 Score=56.13 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=25.8
Q ss_pred HHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 246 ~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
..+++.+ ..|+|+|++|||||+..+.++.++.
T Consensus 154 ~~~v~~~--~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 154 EHAVISK--KNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred HHHHHcC--CcEEEECCCCCCHHHHHHHHHhhCC
Confidence 3445555 4599999999999999999988874
No 108
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=88.96 E-value=0.25 Score=55.67 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=25.3
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
....|+|+|+.|||||++.+.++.++-.-
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred cceEEEEECCCccccchHHHHHhhhcccc
Confidence 35789999999999999999999887653
No 109
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.92 E-value=0.51 Score=55.85 Aligned_cols=53 Identities=19% Similarity=0.391 Sum_probs=38.2
Q ss_pred HHHhhcCCCC----CCchhHHHHHHHHHHHHc-CceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 224 IEAYKSKSIE----SPHVYAITDTAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 224 ~~~y~~~~~~----~PHiyavA~~Ay~~m~~~-~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.++|+-.... .+|+-.. +.+++.. +-+++++++|+.|+|||+.++.+.+.|-+
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~----l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTA----ISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred HHHhCCCchhhccChHHHHHH----HHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 4566654433 4776544 4444444 56899999999999999999999998853
No 110
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=88.89 E-value=0.34 Score=51.33 Aligned_cols=27 Identities=37% Similarity=0.391 Sum_probs=24.0
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
-|.|+|.||||||+..+.++..|...+
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~l~~~g 34 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPALCARG 34 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHHHhhcC
Confidence 678899999999999999999997643
No 111
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=88.89 E-value=0.33 Score=49.93 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=22.1
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHh
Q 001068 257 IIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa~ 280 (1166)
|+|+|.||||||+.++.+..+|..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998874
No 112
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=88.66 E-value=0.31 Score=57.69 Aligned_cols=28 Identities=29% Similarity=0.307 Sum_probs=24.8
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
+--|+|+|++|||||++.+.+++|+...
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~~ 176 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGET 176 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4469999999999999999999998753
No 113
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=88.61 E-value=0.45 Score=50.05 Aligned_cols=27 Identities=37% Similarity=0.359 Sum_probs=22.9
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
+++|+|++|+|||..+-.++...+.-+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g 27 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARG 27 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 489999999999999988888777544
No 114
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=88.61 E-value=0.26 Score=49.41 Aligned_cols=23 Identities=39% Similarity=0.587 Sum_probs=20.4
Q ss_pred EEEcCCCCCChhHHHHHHHHHHH
Q 001068 257 IIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa 279 (1166)
|+++|.+|||||+.++.+.+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 89999999999999999876654
No 115
>PRK06217 hypothetical protein; Validated
Probab=88.48 E-value=0.31 Score=51.69 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.7
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1166)
-|+|+|-||||||+.++.+-+.|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 49999999999999999987765
No 116
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=88.45 E-value=0.25 Score=51.91 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+-|+|.|.||||||+.++.+++.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 568999999999999999998865
No 117
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=88.44 E-value=0.41 Score=48.41 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.9
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 257 IIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
++|+|++|+|||+.++.++..++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~ 26 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK 26 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc
Confidence 7899999999999999999998773
No 118
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=88.39 E-value=0.39 Score=49.01 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=24.6
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
.|.|.|-+|||||+.++.++++|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 378999999999999999999999755
No 119
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=88.29 E-value=0.26 Score=54.66 Aligned_cols=28 Identities=32% Similarity=0.555 Sum_probs=22.2
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHhccC
Q 001068 256 SIIISGESGAGKTETAKIAMQYLAALGG 283 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1166)
-+++-|+||||||++.|+|-+-+.-.+|
T Consensus 29 f~vliGpSGsGKTTtLkMINrLiept~G 56 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIEPTSG 56 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCCc
Confidence 4678899999999999999776554443
No 120
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=88.11 E-value=0.37 Score=52.63 Aligned_cols=26 Identities=46% Similarity=0.606 Sum_probs=21.3
Q ss_pred eEEEE--EcCCCCCChhHHHHHHHHHHH
Q 001068 254 NQSII--ISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 254 ~QsIi--isGESGaGKTe~~K~il~yLa 279 (1166)
+++|| |+|-||||||+.++.+..-|-
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 45555 599999999999999987765
No 121
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=87.94 E-value=0.4 Score=49.83 Aligned_cols=23 Identities=43% Similarity=0.554 Sum_probs=21.4
Q ss_pred EEEcCCCCCChhHHHHHHHHHHH
Q 001068 257 IIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa 279 (1166)
|.|||.+|||||+.++.+-.+|.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 88999999999999999998875
No 122
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=87.94 E-value=6.3 Score=41.47 Aligned_cols=25 Identities=24% Similarity=0.629 Sum_probs=22.0
Q ss_pred CChHHHHHHHHHHHHHHhHHHhhhH
Q 001068 1109 NPDKELRRLKQMFEAWKKDYGSRLR 1133 (1166)
Q Consensus 1109 ~~~~El~~Lk~~f~~wkkd~~~rlr 1133 (1166)
-+.+|..++...|..|.|.|+.|=|
T Consensus 142 vs~ee~~~~~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 142 VSPEEKEKLEKEYKKWRKEWKKRKR 166 (169)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999865
No 123
>PRK12377 putative replication protein; Provisional
Probab=87.93 E-value=0.76 Score=51.52 Aligned_cols=46 Identities=22% Similarity=0.284 Sum_probs=33.9
Q ss_pred CchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 235 PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 235 PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
-|+++.|..-...... ..++|+|+|.+|+|||..+..|.++|..-+
T Consensus 84 ~~a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~~g 129 (248)
T PRK12377 84 RYALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAKG 129 (248)
T ss_pred HHHHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3455555544444332 357999999999999999999999998643
No 124
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=87.71 E-value=0.53 Score=55.95 Aligned_cols=38 Identities=32% Similarity=0.510 Sum_probs=30.6
Q ss_pred HHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
++........+.+++|+|.+|+|||.+++.+++.+...
T Consensus 45 ~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~ 82 (394)
T PRK00411 45 ALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEI 82 (394)
T ss_pred HHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 33344556678899999999999999999999988653
No 125
>PRK13764 ATPase; Provisional
Probab=87.65 E-value=0.5 Score=59.12 Aligned_cols=26 Identities=35% Similarity=0.630 Sum_probs=23.6
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
..|+|+|.+|||||+++..++.|+..
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 44999999999999999999999874
No 126
>PRK12608 transcription termination factor Rho; Provisional
Probab=87.63 E-value=0.46 Score=55.97 Aligned_cols=42 Identities=19% Similarity=0.087 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 239 AITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 239 avA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.+..++...|.--++-|-++|+|++|+|||+.++.+.+.+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 567788888888889999999999999999999999888765
No 127
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=87.59 E-value=0.42 Score=50.30 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=21.0
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1166)
.|+|.|.+|||||+.++.+.+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998776
No 128
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=87.55 E-value=0.4 Score=48.73 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.3
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1166)
+|+|.|.+|||||+.+|.+-++|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998877
No 129
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=87.51 E-value=0.68 Score=53.63 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=27.4
Q ss_pred HHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 247 EMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 247 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.+...+....++|+|++|+|||+.++.+.+++..
T Consensus 29 ~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 29 RAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred HHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3444555457999999999999999999998864
No 130
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=87.47 E-value=0.78 Score=48.43 Aligned_cols=33 Identities=30% Similarity=0.389 Sum_probs=28.4
Q ss_pred HcCceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 250 RDEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 250 ~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
...++-.|-++|-||||||+.+..+-+-|...|
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G 51 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKG 51 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcC
Confidence 345578899999999999999999999888766
No 131
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=87.45 E-value=5.6 Score=44.47 Aligned_cols=40 Identities=28% Similarity=0.499 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001068 961 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYE 1000 (1166)
Q Consensus 961 l~~Lq~r~~k~e~~l~ekeeen~~L~~eL~~~e~r~~E~e 1000 (1166)
+-.|+.++.+.+.++.+-+-|+..|+.+|..+++.|.|.|
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEE 109 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEE 109 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666666666666666666666666544
No 132
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=87.41 E-value=0.97 Score=49.54 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=26.1
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
..+..++|.|++|+|||+.++.+.+.+...+
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~ 70 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGG 70 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 4567899999999999999999988776533
No 133
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=87.27 E-value=0.37 Score=53.50 Aligned_cols=19 Identities=37% Similarity=0.667 Sum_probs=16.6
Q ss_pred EEEEcCCCCCChhHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIA 274 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~i 274 (1166)
-|||||-||||||++.+.+
T Consensus 3 lvIVTGlSGAGKsvAl~~l 21 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVL 21 (286)
T ss_pred EEEEecCCCCcHHHHHHHH
Confidence 4899999999999987765
No 134
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=87.08 E-value=0.42 Score=48.64 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=18.8
Q ss_pred EEEcCCCCCChhHHHHHHHHH
Q 001068 257 IIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~y 277 (1166)
|+|+|.+|||||+.++.+.+-
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 789999999999999988665
No 135
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=86.77 E-value=0.62 Score=53.70 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=26.1
Q ss_pred HHHHHHHcC-ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 244 AIREMIRDE-VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 244 Ay~~m~~~~-~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
........+ -+..++++|++|+|||+.++.+.+.+
T Consensus 32 ~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 32 TFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred HHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 344444333 46778889999999999999998765
No 136
>PRK04040 adenylate kinase; Provisional
Probab=86.77 E-value=0.55 Score=50.39 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=22.7
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
.-|+|+|.+|||||+.++.+.+.|.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5699999999999999999988883
No 137
>PRK04182 cytidylate kinase; Provisional
Probab=86.71 E-value=0.46 Score=49.59 Aligned_cols=23 Identities=43% Similarity=0.635 Sum_probs=20.5
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1166)
-|+|+|.+|||||+.++.+-+.|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999997665
No 138
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=86.65 E-value=0.59 Score=57.45 Aligned_cols=35 Identities=31% Similarity=0.524 Sum_probs=26.6
Q ss_pred HHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
.++.+...+ .--|+|+|++|||||++...++.++.
T Consensus 233 ~l~~~~~~~-~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 233 RFERLIRRP-HGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred HHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 445555432 34689999999999999998888775
No 139
>PRK14527 adenylate kinase; Provisional
Probab=86.64 E-value=0.5 Score=50.48 Aligned_cols=28 Identities=36% Similarity=0.434 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
.+.+-|+|.|.+|||||+.++.+.+.+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578899999999999999999876663
No 140
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=86.54 E-value=0.58 Score=52.76 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=21.9
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 257 IIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
|.|+|-||||||+.++.+.+.|...
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~~ 26 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFARE 26 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 7899999999999999998887653
No 141
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=86.48 E-value=2.3 Score=51.95 Aligned_cols=27 Identities=41% Similarity=0.597 Sum_probs=23.4
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
-.++|.|++|+|||+.+..+..+|...
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~ 168 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESN 168 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHh
Confidence 359999999999999999888888754
No 142
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.44 E-value=0.78 Score=56.24 Aligned_cols=55 Identities=29% Similarity=0.407 Sum_probs=38.8
Q ss_pred HHhhcCCCC----CCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 225 EAYKSKSIE----SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 225 ~~y~~~~~~----~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
.+|+-+... .+|+-..-.+|+ ..++-+|++|++|..|.|||++++++-+.|-+..
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~---~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~ 63 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAF---TLNKIPQSILLVGASGVGKTTCARIISLCLNCSN 63 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHH---HcCCCCceEEEECCCCccHHHHHHHHHHHHcCcC
Confidence 456544432 477655443333 2356689999999999999999999998886543
No 143
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=86.38 E-value=0.54 Score=50.03 Aligned_cols=22 Identities=45% Similarity=0.593 Sum_probs=20.4
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 001068 257 IIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yL 278 (1166)
|+|.|.|||||||-++.|.+.+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998873
No 144
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=86.24 E-value=8.1 Score=39.75 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=13.4
Q ss_pred chHHHHHHHHHHHhhhhccccc
Q 001068 1072 LSVISRLAEEFDQRSQVFGDDA 1093 (1166)
Q Consensus 1072 ~s~v~~L~~Efe~r~q~f~~~a 1093 (1166)
+..++.-+.+|+++.+.++...
T Consensus 103 l~e~d~~ae~~eRkv~~le~~~ 124 (143)
T PF12718_consen 103 LREADVKAEHFERKVKALEQER 124 (143)
T ss_pred HHHHHHHhHHHHHHHHHHHhhH
Confidence 3345556777777777765433
No 145
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=86.21 E-value=2.4 Score=53.21 Aligned_cols=26 Identities=38% Similarity=0.519 Sum_probs=23.6
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 256 SIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
.|+|.|.||+|||..++.|.+++...
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~ 341 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRL 341 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 49999999999999999999998764
No 146
>PRK07667 uridine kinase; Provisional
Probab=86.20 E-value=0.98 Score=48.49 Aligned_cols=27 Identities=22% Similarity=0.107 Sum_probs=23.0
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
--|-|+|-||||||+.++.+.+.|...
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 356789999999999999999988753
No 147
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=86.11 E-value=0.56 Score=49.47 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
++.|+|.|.+|||||+.++.+...|
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5679999999999999999987765
No 148
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=86.09 E-value=1.1 Score=51.48 Aligned_cols=38 Identities=18% Similarity=0.375 Sum_probs=29.1
Q ss_pred HHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
...+..+..+..-.++|+|+.|+|||+.++.+.+.+..
T Consensus 27 ~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~ 64 (319)
T PRK00440 27 ERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG 64 (319)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34555555555456999999999999999999887753
No 149
>PRK11637 AmiB activator; Provisional
Probab=86.08 E-value=7.4 Score=47.17 Aligned_cols=21 Identities=14% Similarity=0.146 Sum_probs=9.9
Q ss_pred HHHHHHHHHhhhhccccccce
Q 001068 1076 SRLAEEFDQRSQVFGDDAKFL 1096 (1166)
Q Consensus 1076 ~~L~~Efe~r~q~f~~~a~~l 1096 (1166)
..+.+++....+.+.+..+.|
T Consensus 169 ~~~l~~l~~~~~~L~~~k~~l 189 (428)
T PRK11637 169 QETIAELKQTREELAAQKAEL 189 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444444333
No 150
>PHA00729 NTP-binding motif containing protein
Probab=85.94 E-value=1.1 Score=49.40 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 241 TDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 241 A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
|......+. +..-..|+|+|.+|+|||+.+..+.+.+.
T Consensus 5 ~k~~~~~l~-~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 5 AKKIVSAYN-NNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHHHh-cCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 333333333 33456899999999999999999988765
No 151
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=85.80 E-value=0.61 Score=49.42 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
...|+|.|.||||||+.++.+...+.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35789999999999999999988764
No 152
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=85.77 E-value=0.76 Score=48.08 Aligned_cols=27 Identities=41% Similarity=0.555 Sum_probs=23.9
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
.|+++|++|+|||+.+..+...++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 478999999999999999999888754
No 153
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=85.66 E-value=0.59 Score=49.17 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCChhHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~ 276 (1166)
...|+|+|+||+||||++-.+++
T Consensus 18 G~GVLi~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 18 GVGVLITGPSGIGKSELALELIK 40 (171)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988876
No 154
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=85.65 E-value=2.1 Score=54.62 Aligned_cols=54 Identities=20% Similarity=0.405 Sum_probs=38.7
Q ss_pred HHHhhcCCCC----CCchhHHHHHHHHHHHHc-CceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 224 IEAYKSKSIE----SPHVYAITDTAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 224 ~~~y~~~~~~----~PHiyavA~~Ay~~m~~~-~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
.++|+-+..+ ..||-. ..++++.. +-.+++||+|..|.|||++++++.+.|-+.
T Consensus 7 arKYRPqtFdEVIGQe~Vv~----~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 7 ARKWRPKDFASLVGQEHVVR----ALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred HHHhCCCcHHHHcCcHHHHH----HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 3556644432 466644 44444444 458899999999999999999999988753
No 155
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=85.61 E-value=25 Score=45.19 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001068 952 DEVLVKASFLAELQRRVLKAEAALR----EKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKS 1027 (1166)
Q Consensus 952 ~~l~~~~~~l~~Lq~r~~k~e~~l~----ekeeen~~L~~eL~~~e~r~~E~e~~~~~~ee~lqkq~~~LQ~~l~~lk~~ 1027 (1166)
+..+.+...+.+++-|...+|.++. ......+.+++++++.+..+..-|....+....++..+..|+.+.+.++..
T Consensus 969 k~aKmkqeelSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a~lr~Ke~efeetmdaLq~di~~lEsek~elKqr 1048 (1243)
T KOG0971|consen 969 KSAKMKQEELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQALLRKKEKEFEETMDALQADIDQLESEKAELKQR 1048 (1243)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3444566778888888888888877 334455677777777766666555555555566788888888888888887
Q ss_pred ccc
Q 001068 1028 LAI 1030 (1166)
Q Consensus 1028 Le~ 1030 (1166)
+..
T Consensus 1049 l~~ 1051 (1243)
T KOG0971|consen 1049 LNS 1051 (1243)
T ss_pred hhh
Confidence 644
No 156
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=85.61 E-value=0.74 Score=47.83 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=23.4
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 257 IIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
|.|+|.+|||||+.+..++..|...|
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G 27 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARG 27 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 67899999999999999999998654
No 157
>PRK08727 hypothetical protein; Validated
Probab=85.52 E-value=1.2 Score=49.40 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=26.6
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
....+.|+|+|+||+|||+.+..+...+...+
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~ 69 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQAG 69 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 34557899999999999999999888877643
No 158
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=85.48 E-value=0.45 Score=51.38 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=29.6
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHhccCCCCchhhhhhhh-----HHHHhhcCc
Q 001068 257 IIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTN-----PILEAFGNA 304 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa~~~~~~~ie~~il~sn-----piLEAFGNA 304 (1166)
|.|+|.+|||||+.++++-.+=+..=....+...++.-+ .|.+.||..
T Consensus 2 i~itG~~gsGKst~~~~l~~~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~ 54 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEELGAFGISADRLAKRYTEPDSPILSELVSLLGPS 54 (196)
T ss_pred EEEECCCCccHHHHHHHHHHCCCEEEecchHHHHHHhcCcHHHHHHHHHhChh
Confidence 789999999999999876543111001124555555532 266777764
No 159
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=85.46 E-value=0.89 Score=55.04 Aligned_cols=64 Identities=30% Similarity=0.503 Sum_probs=40.1
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHhccCCC-------CchhhhhhhhHHHHhhcCcccC-CCCCCCccccEEE
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAALGGGS-------GIEYEILKTNPILEAFGNAKTS-RNDNSSRFGKLIE 320 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~-------~ie~~il~snpiLEAFGNAkT~-~N~NSSRfGk~i~ 320 (1166)
..+=+|+|+||||+||-..++.|=+ +....++. .|...++++ |-||..|-. .-.+.+|-|+|-.
T Consensus 162 ~s~a~VLI~GESGtGKElvAr~IH~-~S~R~~~PFVavNcaAip~~l~ES----ELFGhekGAFTGA~~~r~G~fE~ 233 (464)
T COG2204 162 PSDASVLITGESGTGKELVARAIHQ-ASPRAKGPFIAVNCAAIPENLLES----ELFGHEKGAFTGAITRRIGRFEQ 233 (464)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHh-hCcccCCCceeeecccCCHHHHHH----HhhcccccCcCCcccccCcceeE
Confidence 4567899999999999887766533 33332222 233333322 449988832 2456788999863
No 160
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=85.45 E-value=0.85 Score=40.03 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=17.3
Q ss_pred EEEEcCCCCCChhHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~ 276 (1166)
..+|+|++|||||+..-.+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999988766543
No 161
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=85.42 E-value=0.44 Score=53.46 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=26.3
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1166)
.+..++-|-||||+|||++.|.++.-+--.+|
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G 68 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSG 68 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCc
Confidence 34577888999999999999999987765554
No 162
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=85.42 E-value=0.64 Score=54.04 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=27.2
Q ss_pred HHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 245 y~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
...++..+ ..|+|+|.+|||||+.++.++.++...
T Consensus 141 L~~~v~~~--~~ilI~G~tGSGKTTll~aL~~~~~~~ 175 (319)
T PRK13894 141 IIAAVRAH--RNILVIGGTGSGKTTLVNAIINEMVIQ 175 (319)
T ss_pred HHHHHHcC--CeEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 33444443 679999999999999999999887543
No 163
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=85.29 E-value=0.63 Score=49.00 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=20.7
Q ss_pred EEEcCCCCCChhHHHHHHHHHHH
Q 001068 257 IIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa 279 (1166)
|+|.|.+|||||+.++.+.+.+-
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999988763
No 164
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.29 E-value=0.88 Score=55.41 Aligned_cols=53 Identities=19% Similarity=0.361 Sum_probs=37.9
Q ss_pred HHhhcCCCC----CCchhHHHHHHHHHHHHcC-ceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 225 EAYKSKSIE----SPHVYAITDTAIREMIRDE-VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 225 ~~y~~~~~~----~PHiyavA~~Ay~~m~~~~-~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
++|+-+... ..|+... ...++..+ ..+++|++|+.|.|||++++++.+.|-+.
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~----L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGA----LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred HHhCCCCHHHHhChHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 456544332 4777654 44444444 47889999999999999999999988753
No 165
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=85.23 E-value=0.64 Score=49.28 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
.-|||+|.||||||+.++.+++-+-
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcc
Confidence 4689999999999999999988654
No 166
>PRK15453 phosphoribulokinase; Provisional
Probab=85.17 E-value=0.72 Score=52.42 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
+.=-|.|+|-||||||+.++.+.+-|.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 334689999999999999988765543
No 167
>PRK14974 cell division protein FtsY; Provisional
Probab=85.03 E-value=1.4 Score=51.65 Aligned_cols=31 Identities=32% Similarity=0.393 Sum_probs=27.0
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
+++..|+++|..|+|||+++..+..+|...+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 4578999999999999999999999887643
No 168
>PRK06893 DNA replication initiation factor; Validated
Probab=84.97 E-value=1.3 Score=48.81 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=32.7
Q ss_pred CchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 235 PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 235 PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
+|.. .+..+.+.+ ....+-+++|.|+||+|||+.+..+.+.++.-+
T Consensus 22 ~~~~-~~~~~~~~~-~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~ 67 (229)
T PRK06893 22 NNLL-LLDSLRKNF-IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQ 67 (229)
T ss_pred ChHH-HHHHHHHHh-hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 4543 333344443 345567899999999999999999998876643
No 169
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=84.96 E-value=0.82 Score=52.23 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=25.7
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
+...|+|.|.+|+|||+++..+..|++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45689999999999999999999998764
No 170
>PRK06761 hypothetical protein; Provisional
Probab=84.93 E-value=0.61 Score=53.16 Aligned_cols=26 Identities=42% Similarity=0.560 Sum_probs=23.6
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.-|+|+|.+|||||+.++.+.++|..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46999999999999999999999864
No 171
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=84.89 E-value=1.3 Score=44.34 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+....|+++|+=|||||+-+|-+++.|
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 556889999999999999999998887
No 172
>PRK00698 tmk thymidylate kinase; Validated
Probab=84.84 E-value=0.94 Score=48.46 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=24.5
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
+-.|+|.|.+|||||+.++.+-++|...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3579999999999999999999988653
No 173
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.78 E-value=0.72 Score=52.41 Aligned_cols=75 Identities=24% Similarity=0.407 Sum_probs=48.4
Q ss_pred hcCccccccCCceEEeCCCCCCCCCCHHHHHHhhcCCC--------CCCchhHHHHHHHHHHHHcCceEEEEEcCCCCCC
Q 001068 195 KQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSI--------ESPHVYAITDTAIREMIRDEVNQSIIISGESGAG 266 (1166)
Q Consensus 195 ~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~y~~~~~--------~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaG 266 (1166)
.-|.-||..|.-=+-||-|+...-|+- .++--+. .-|-|+ .. +-...+--|+++|.+|||
T Consensus 70 E~Dfs~~~~~~~RfRvN~f~qr~~~a~----vlR~Ip~~i~~~e~LglP~i~-------~~-~~~~~~GLILVTGpTGSG 137 (353)
T COG2805 70 ELDFSYTLPGVARFRVNAFKQRGGYAL----VLRLIPSKIPTLEELGLPPIV-------RE-LAESPRGLILVTGPTGSG 137 (353)
T ss_pred ceeEEEecCCcceEEeehhhhcCCcEE----EEeccCccCCCHHHcCCCHHH-------HH-HHhCCCceEEEeCCCCCc
Confidence 456778888888888888875432210 0110000 113332 22 224557889999999999
Q ss_pred hhHHHHHHHHHHHhc
Q 001068 267 KTETAKIAMQYLAAL 281 (1166)
Q Consensus 267 KTe~~K~il~yLa~~ 281 (1166)
||+|.--++.|+-.-
T Consensus 138 KSTTlAamId~iN~~ 152 (353)
T COG2805 138 KSTTLAAMIDYINKH 152 (353)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999998753
No 174
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=84.64 E-value=0.82 Score=51.47 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=26.4
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
...-.|++.|++|+|||+.++.+-+.|...+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 3457899999999999999999999886544
No 175
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=84.57 E-value=0.73 Score=46.24 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.8
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1166)
.|+|.|++|+|||+.++.+.+-+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999988877
No 176
>PRK14531 adenylate kinase; Provisional
Probab=84.50 E-value=0.82 Score=48.55 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yL 278 (1166)
|-|+|.|.+|||||+.++.+-+.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 569999999999999999998775
No 177
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.42 E-value=0.68 Score=50.48 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..|.++-.+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 346889999999999999999886543
No 178
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=84.39 E-value=0.71 Score=51.02 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=25.4
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
.+..++=|.||||||||+.++.++-+...-.
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~ 61 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKPSS 61 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCCCC
Confidence 4567888999999999999999987765533
No 179
>PRK08356 hypothetical protein; Provisional
Probab=84.39 E-value=0.65 Score=49.87 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCChhHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~ 276 (1166)
--|+|+|.+|||||+.++.+-.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999998843
No 180
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=84.26 E-value=0.7 Score=52.93 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCChhHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIA 274 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~i 274 (1166)
.+-|+|+|.||||||+.++.+
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l 26 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRAL 26 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHH
Confidence 468999999999999999988
No 181
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=84.25 E-value=1 Score=46.98 Aligned_cols=28 Identities=36% Similarity=0.399 Sum_probs=24.7
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
+.|.|+|.||||||+.++.++..|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g 29 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3688999999999999999999987654
No 182
>PRK13342 recombination factor protein RarA; Reviewed
Probab=84.23 E-value=1.1 Score=54.00 Aligned_cols=43 Identities=30% Similarity=0.407 Sum_probs=34.0
Q ss_pred CchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 235 PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 235 PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.|+... ....+.++..+...+|||+|++|+|||+.++.+.+.+
T Consensus 18 ~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 18 EHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 555443 4556777778888899999999999999999987654
No 183
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=84.15 E-value=0.75 Score=48.95 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~ 276 (1166)
..+.+.|.|++|||||+..+.++-
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 468899999999999999888764
No 184
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=84.06 E-value=0.51 Score=49.38 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
+++.+++.|.||+|||+....++..
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3589999999999999988777654
No 185
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=83.97 E-value=0.75 Score=49.83 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..+.++-.+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999999886543
No 186
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=83.96 E-value=0.6 Score=54.79 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=24.3
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
-++-+-||||||||.|+.-+|+-|..-+
T Consensus 37 EtlAlVGESGSGKSvTa~sim~LLp~~~ 64 (534)
T COG4172 37 ETLALVGESGSGKSVTALSILGLLPSPA 64 (534)
T ss_pred CEEEEEecCCCCccHHHHHHHHhcCCCc
Confidence 4677889999999999999999998743
No 187
>PRK14528 adenylate kinase; Provisional
Probab=83.96 E-value=0.88 Score=48.57 Aligned_cols=24 Identities=46% Similarity=0.632 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+-|+|.|.+|||||+.++.+-+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999999997765
No 188
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=83.95 E-value=0.59 Score=54.06 Aligned_cols=26 Identities=38% Similarity=0.562 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
...|+|+|.+|||||+..+.++.++.
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCC
Confidence 36899999999999999999887764
No 189
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=83.94 E-value=0.75 Score=49.96 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|+||||||+..|.+.-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46889999999999999988886543
No 190
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=83.89 E-value=1.4 Score=47.41 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=31.4
Q ss_pred HHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
.|++.++.+ .++.++|.|..|+|||++.+.+.+++...+
T Consensus 8 ~a~~~~l~~-~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g 46 (196)
T PF13604_consen 8 EAVRAILTS-GDRVSVLQGPAGTGKTTLLKALAEALEAAG 46 (196)
T ss_dssp HHHHHHHHC-TCSEEEEEESTTSTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhc-CCeEEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence 455566544 578899999999999999999999888753
No 191
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=83.87 E-value=1.1 Score=40.97 Aligned_cols=26 Identities=38% Similarity=0.549 Sum_probs=23.6
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 257 IIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
|+++|..|+|||+.+..+...|+..+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g 27 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG 27 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 78899999999999999999999843
No 192
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=83.86 E-value=1.8 Score=44.62 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=26.1
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
-..+=.|+++|+=|||||+-+|-+++.|..
T Consensus 22 l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 22 LKAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 345667889999999999999999999875
No 193
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=83.85 E-value=0.75 Score=49.01 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=30.8
Q ss_pred EEEcCCCCCChhHHHHHHHHHH-HhccCCCCchhhhhhhh-----HHHHhhc
Q 001068 257 IIISGESGAGKTETAKIAMQYL-AALGGGSGIEYEILKTN-----PILEAFG 302 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yL-a~~~~~~~ie~~il~sn-----piLEAFG 302 (1166)
|.|+|-.|||||+.++++-+.. ..+=....+..+++..+ .|.+.||
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg 53 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFG 53 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHC
Confidence 7899999999999998776653 22211234455555533 3788888
No 194
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=83.83 E-value=0.75 Score=53.73 Aligned_cols=27 Identities=30% Similarity=0.260 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.+.+.+.|.|+||||||+..+.|+..+
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 457889999999999999999987554
No 195
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=83.80 E-value=0.65 Score=54.56 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=26.7
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
++.|++=|-||||||||+.-..+++-+.+-
T Consensus 311 ~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 311 RRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 568999999999999999999998887664
No 196
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=83.79 E-value=1.8 Score=47.65 Aligned_cols=43 Identities=16% Similarity=0.175 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCc--eEEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 001068 241 TDTAIREMIRDEV--NQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1166)
Q Consensus 241 A~~Ay~~m~~~~~--~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1166)
|-.|...+..... -..++|.|+||+|||+..+.+..++.....
T Consensus 19 a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~ 63 (219)
T PF00308_consen 19 AYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHP 63 (219)
T ss_dssp HHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccc
Confidence 3345555555432 357999999999999999998888776543
No 197
>PRK03839 putative kinase; Provisional
Probab=83.75 E-value=0.85 Score=48.09 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=20.5
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1166)
-|+|.|-+|||||+.++.+-+.|
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999987765
No 198
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=83.75 E-value=0.76 Score=49.08 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCChhHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~y 277 (1166)
--+.++|.||||||+..|+|+.-
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 45688999999999999998654
No 199
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=83.73 E-value=1.1 Score=52.08 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=27.3
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
+..+.|.+.|.+|||||+++..+..++...+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g 142 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG 142 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 4578999999999999999999999988654
No 200
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=83.71 E-value=0.97 Score=47.73 Aligned_cols=25 Identities=36% Similarity=0.508 Sum_probs=22.9
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 257 IIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
|+|.|..|||||+.++.+-++|...
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~~ 27 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEAR 27 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 8899999999999999999998753
No 201
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=83.67 E-value=0.61 Score=57.26 Aligned_cols=29 Identities=34% Similarity=0.361 Sum_probs=25.5
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
.-+.+=|-||||||||+++..+|.+|-.-
T Consensus 34 ~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 34 PGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 45778899999999999999999998764
No 202
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=83.64 E-value=0.8 Score=49.95 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
...+.+.|.|+||||||+..|.++-.+.
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 3468899999999999999999876554
No 203
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.61 E-value=0.83 Score=49.52 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999998887544
No 204
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=83.59 E-value=1.4 Score=46.78 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=25.1
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
+..-.|+|+|.||||||+.++.+...|..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44568999999999999999999998864
No 205
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=83.53 E-value=0.69 Score=46.14 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
..+.+.|.|++|||||+..+.+...+.
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCCEEEEEccCCCccccceeeeccccc
Confidence 457899999999999998887754443
No 206
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.51 E-value=1.3 Score=54.28 Aligned_cols=52 Identities=27% Similarity=0.504 Sum_probs=36.5
Q ss_pred HHhhcCCCC----CCchhHHHHHHHHHHHHc-CceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 225 EAYKSKSIE----SPHVYAITDTAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 225 ~~y~~~~~~----~PHiyavA~~Ay~~m~~~-~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
+.|+-+... .+|+- ...+.++.. +-++++|++|+.|.|||+.++.+.+.|-.
T Consensus 6 ~kyRP~~~~divGq~~i~----~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVK----KLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHHCCCCHHHccCcHHHH----HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 455544432 57773 344455544 44688999999999999999999887654
No 207
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=83.47 E-value=0.78 Score=50.25 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356889999999999999999998776
No 208
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=83.46 E-value=1.9 Score=48.95 Aligned_cols=46 Identities=24% Similarity=0.391 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHH---------cCceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 237 VYAITDTAIREMIR---------DEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 237 iyavA~~Ay~~m~~---------~~~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
++.+...++..++. .+..+.|++.|.+|+|||+++-.+..+|+..+
T Consensus 46 ~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g 100 (272)
T TIGR00064 46 LKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQG 100 (272)
T ss_pred HHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 44555555555542 23468999999999999999999888887654
No 209
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=83.45 E-value=1.3 Score=55.11 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=26.2
Q ss_pred HHcCceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 249 ~~~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
+....+|.|+|+||+|+|||..++.+.++.-
T Consensus 81 l~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 81 LCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred HhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 4456689999999999999999999977643
No 210
>PRK10436 hypothetical protein; Provisional
Probab=83.43 E-value=0.79 Score=55.90 Aligned_cols=36 Identities=31% Similarity=0.493 Sum_probs=27.4
Q ss_pred HHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.++.+.. ...--|||+|.+|||||++...++.++..
T Consensus 209 ~l~~~~~-~~~GliLvtGpTGSGKTTtL~a~l~~~~~ 244 (462)
T PRK10436 209 QFRQALQ-QPQGLILVTGPTGSGKTVTLYSALQTLNT 244 (462)
T ss_pred HHHHHHH-hcCCeEEEECCCCCChHHHHHHHHHhhCC
Confidence 4445543 23457899999999999999999888754
No 211
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=83.42 E-value=1.5 Score=51.72 Aligned_cols=41 Identities=15% Similarity=0.312 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcC-ceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 241 TDTAIREMIRDE-VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 241 A~~Ay~~m~~~~-~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
|...+..++..+ -+++++|+|+.|.|||+.++.+.++|.+-
T Consensus 31 a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 31 AEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred HHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 445666665544 48999999999999999999999998763
No 212
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=83.35 E-value=0.87 Score=50.81 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=22.3
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHh
Q 001068 257 IIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa~ 280 (1166)
|+|+|-+|||||+.++.+-++|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999864
No 213
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=83.33 E-value=12 Score=46.20 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=11.8
Q ss_pred CCChHHHHHHHHHHHHHHhHH
Q 001068 1108 LNPDKELRRLKQMFEAWKKDY 1128 (1166)
Q Consensus 1108 ~~~~~El~~Lk~~f~~wkkd~ 1128 (1166)
.....|+..||.++.++....
T Consensus 279 ~~~~~e~e~LkeqLr~~qe~l 299 (546)
T PF07888_consen 279 QQLQQENEALKEQLRSAQEQL 299 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666554433
No 214
>PLN03025 replication factor C subunit; Provisional
Probab=83.33 E-value=1.5 Score=50.93 Aligned_cols=37 Identities=27% Similarity=0.396 Sum_probs=30.3
Q ss_pred HHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
..+.+...+.-.+++++|++|+|||++++.+.+.|..
T Consensus 24 ~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 24 RLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3455666666678999999999999999999988753
No 215
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.31 E-value=1.4 Score=54.91 Aligned_cols=55 Identities=20% Similarity=0.392 Sum_probs=38.5
Q ss_pred HHHhhcCCCC----CCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 224 IEAYKSKSIE----SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 224 ~~~y~~~~~~----~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
.++|+-.... .+|+...-..+++ ..+-++++|++|+.|+|||+.++.+.++|-+.
T Consensus 7 a~KyRP~~f~diiGq~~~v~~L~~~i~---~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~ 65 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNSLVHALE---TQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCK 65 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3556544432 4777654333332 23567889999999999999999999998753
No 216
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.30 E-value=0.62 Score=51.23 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
...+.+.|.|+||||||+..|.+...+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4578999999999999999888865543
No 217
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=83.30 E-value=0.8 Score=53.45 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.||||||||+..+.|+..+
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 346899999999999999999887654
No 218
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=83.30 E-value=1.2 Score=56.23 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=28.3
Q ss_pred HcCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 250 RDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 250 ~~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
..+..|++|++|.+|.|||++++.+.+.|-+.
T Consensus 42 ~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 42 TGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 34568999999999999999999999998764
No 219
>PRK08116 hypothetical protein; Validated
Probab=83.28 E-value=1.8 Score=49.10 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=33.6
Q ss_pred CchhHHHHHHHHHHHHc-CceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 235 PHVYAITDTAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 235 PHiyavA~~Ay~~m~~~-~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
.+.|..|..-....... ..+..++|.|.+|+|||..+..+.++|...
T Consensus 94 ~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 94 EKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred HHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 33455555444433322 345679999999999999999999999875
No 220
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=83.24 E-value=0.84 Score=52.17 Aligned_cols=24 Identities=25% Similarity=0.273 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+.||++|.+|||||+.++.+.+.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 679999999999999999988765
No 221
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=83.24 E-value=14 Score=44.05 Aligned_cols=75 Identities=23% Similarity=0.259 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001068 955 LVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLA 1029 (1166)
Q Consensus 955 ~~~~~~l~~Lq~r~~k~e~~l~ekeeen~~L~~eL~~~e~r~~E~e~~~~~~ee~lqkq~~~LQ~~l~~lk~~Le 1029 (1166)
+.....+.+++.++.+.+.++.+.++++..|.+........+.+.+++.++.....++++..||+++..+---++
T Consensus 378 k~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le 452 (493)
T KOG0804|consen 378 KIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLE 452 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehh
Confidence 344556677888888888888888888888888888888888888888777777777788888888776654443
No 222
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=83.18 E-value=0.67 Score=50.10 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|+||||||+..+.++-.+
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 46889999999999999999887554
No 223
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=83.17 E-value=0.87 Score=50.69 Aligned_cols=26 Identities=38% Similarity=0.571 Sum_probs=23.2
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
=.|+|-|.||||||+..+.++.++..
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcc
Confidence 46899999999999999999988764
No 224
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=83.15 E-value=0.86 Score=49.52 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..|.++-.+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 346889999999999999999887554
No 225
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=83.15 E-value=0.86 Score=49.00 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|++|||||+..+.++-.+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 46889999999999999988886443
No 226
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=83.10 E-value=0.58 Score=58.04 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=25.3
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
++.+.|.|.|+||||||+..|.++.++.-
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 387 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLDP 387 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 56799999999999999999999877543
No 227
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=83.07 E-value=0.5 Score=57.99 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=24.1
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
+-.++=|.||||||||+.+|.++..+.--+
T Consensus 316 ~GE~lglVGeSGsGKSTlar~i~gL~~P~~ 345 (539)
T COG1123 316 EGETLGLVGESGSGKSTLARILAGLLPPSS 345 (539)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 345667789999999999999988776533
No 228
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=83.04 E-value=0.99 Score=51.60 Aligned_cols=28 Identities=36% Similarity=0.453 Sum_probs=25.1
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHhccC
Q 001068 256 SIIISGESGAGKTETAKIAMQYLAALGG 283 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1166)
.|+|.|++|+|||+.++.+-+++...+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 5999999999999999999999987653
No 229
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=83.00 E-value=0.95 Score=51.37 Aligned_cols=28 Identities=36% Similarity=0.458 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
-.-|+|+|+||+||||++=-+++-=..+
T Consensus 145 GvGVLItG~SG~GKSElALeLi~rghrL 172 (308)
T COG1493 145 GVGVLITGPSGAGKSELALELIKRGHRL 172 (308)
T ss_pred eeEEEEECCCCCCHhHHHHHHHHhccce
Confidence 3679999999999999988777654433
No 230
>PRK13768 GTPase; Provisional
Probab=82.99 E-value=1.1 Score=50.45 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=24.6
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
.|+|+|.+|+|||+.+..+..+|+..|
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g 30 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQG 30 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcC
Confidence 589999999999999999999998754
No 231
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=82.95 E-value=0.88 Score=49.25 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999988886543
No 232
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=82.94 E-value=1.2 Score=44.00 Aligned_cols=26 Identities=46% Similarity=0.747 Sum_probs=24.0
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 257 IIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
|+++|.+|+|||+.+..+.++|+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g 27 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKG 27 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 89999999999999999999998744
No 233
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=82.93 E-value=0.86 Score=47.73 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCChhHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~ 276 (1166)
--.|.|+|.||+|||+..|.+..
T Consensus 29 Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHh
Confidence 46799999999999998887643
No 234
>PLN02318 phosphoribulokinase/uridine kinase
Probab=82.91 E-value=1.4 Score=54.87 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=31.7
Q ss_pred CchhHHHHHHHHHHHHcC-ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 235 PHVYAITDTAIREMIRDE-VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 235 PHiyavA~~Ay~~m~~~~-~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
-|=|-++-+|-+-+..+. ..--|-|+|.||||||+.++.|...+
T Consensus 45 d~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 45 EKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred ccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 455667777776665533 34567789999999999999886543
No 235
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=82.88 E-value=0.79 Score=53.54 Aligned_cols=26 Identities=42% Similarity=0.578 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.||||||||+.++.|+..+
T Consensus 41 ~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 41 AGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 46889999999999999999887554
No 236
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.87 E-value=0.89 Score=50.29 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|++|||||+..|.++-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999998886543
No 237
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=82.85 E-value=1.2 Score=55.11 Aligned_cols=45 Identities=18% Similarity=0.356 Sum_probs=34.4
Q ss_pred CCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 234 SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 234 ~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
.+|+...-..| +..++.++++|++|+.|.|||++++++.+.|-+.
T Consensus 26 q~~vv~~L~~a---i~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 26 QEVLVKVLSYT---ILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred cHHHHHHHHHH---HHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 46665543333 2345668999999999999999999999988764
No 238
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=82.84 E-value=0.85 Score=53.33 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.||||||||+..|.|+..+
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 356889999999999999999987544
No 239
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.71 E-value=0.95 Score=47.75 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999998886544
No 240
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=82.46 E-value=1.8 Score=46.02 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=30.2
Q ss_pred HHHHHHc-CceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 245 IREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 245 y~~m~~~-~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
+..++.. +-++++++.|++|.|||+.++.+.+.|...
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3445544 467999999999999999999999988764
No 241
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=82.40 E-value=0.94 Score=48.16 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.4
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1166)
-|||+|.||||||+.++.+++..
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999998887764
No 242
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=82.40 E-value=1 Score=49.11 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
...+.+.|.|+||||||+..+.+.-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 35689999999999999998877543
No 243
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=82.34 E-value=0.92 Score=48.91 Aligned_cols=34 Identities=29% Similarity=0.495 Sum_probs=27.4
Q ss_pred HHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 245 y~~m~~~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
....+..+.+++|+|.|..|+|||..++.+++.+
T Consensus 11 l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 11 LKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 3445556678999999999999999999998877
No 244
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.33 E-value=0.98 Score=54.77 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=28.9
Q ss_pred HHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 242 DTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 242 ~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
...++.++... .-=|+++|..|||||+|..-++++|-+-
T Consensus 247 ~~~~~~~~~~p-~GliLvTGPTGSGKTTTLY~~L~~ln~~ 285 (500)
T COG2804 247 LARLLRLLNRP-QGLILVTGPTGSGKTTTLYAALSELNTP 285 (500)
T ss_pred HHHHHHHHhCC-CeEEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence 44566665432 3345679999999999999999998763
No 245
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=82.26 E-value=26 Score=40.70 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=19.0
Q ss_pred CChHHHHHHHHHHHHHHhHHHhhh
Q 001068 1109 NPDKELRRLKQMFEAWKKDYGSRL 1132 (1166)
Q Consensus 1109 ~~~~El~~Lk~~f~~wkkd~~~rl 1132 (1166)
-...|..+||.+|..+.+--.-+.
T Consensus 268 ~t~~Ei~~Lk~~~~~Le~l~g~~~ 291 (312)
T smart00787 268 FTFKEIEKLKEQLKLLQSLTGWKI 291 (312)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCee
Confidence 667899999999998887655554
No 246
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=82.25 E-value=0.97 Score=51.40 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.4
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 001068 257 IIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yL 278 (1166)
|.|+|.||||||+.++.+...|
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6789999999999999887666
No 247
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=82.20 E-value=0.91 Score=49.19 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
...+.+.|.|+||||||+..+.+.-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 35688999999999999999887544
No 248
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.18 E-value=64 Score=41.05 Aligned_cols=33 Identities=12% Similarity=0.017 Sum_probs=22.0
Q ss_pred CCCcchHHHHHHHHHHHhhhhccccccceeecc
Q 001068 1068 MSAGLSVISRLAEEFDQRSQVFGDDAKFLVEVK 1100 (1166)
Q Consensus 1068 ~~~~~s~v~~L~~Efe~r~q~f~~~a~~l~E~~ 1100 (1166)
-+++.+....+.++=+--+|.+.|.++.|.-.+
T Consensus 526 ~~~~~s~L~aa~~~ke~irq~ikdqldelskE~ 558 (1118)
T KOG1029|consen 526 TTQRKSELEAARRKKELIRQAIKDQLDELSKET 558 (1118)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667777777888888887765433
No 249
>PRK02496 adk adenylate kinase; Provisional
Probab=82.12 E-value=1.1 Score=47.48 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.3
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 001068 257 IIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yL 278 (1166)
|+|.|.+|||||+.++.+-+.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998766
No 250
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=82.08 E-value=0.88 Score=49.26 Aligned_cols=49 Identities=22% Similarity=0.347 Sum_probs=30.7
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHhccCCCCchhhhhh-----hhHHHHhhcCc
Q 001068 256 SIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILK-----TNPILEAFGNA 304 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa~~~~~~~ie~~il~-----snpiLEAFGNA 304 (1166)
.|.|+|.+|||||+.++++..+=+.+=....+...++. ...|.+.||..
T Consensus 3 ~igitG~igsGKst~~~~l~~~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~ 56 (200)
T PRK14734 3 RIGLTGGIGSGKSTVADLLSSEGFLIVDADQVARDIVEPGQPALAELAEAFGDD 56 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCcc
Confidence 58999999999999998887531111111233344444 24567777764
No 251
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=82.05 E-value=0.93 Score=52.86 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+-|.||||||||+.++.|+..+
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 346788999999999999999998755
No 252
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.02 E-value=1.4 Score=54.48 Aligned_cols=45 Identities=27% Similarity=0.427 Sum_probs=33.3
Q ss_pred CCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 234 SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 234 ~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
..|+...-..++. ..+-.+++|++|++|+|||+.++.+.+.|.+.
T Consensus 19 q~~v~~~L~~~i~---~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 19 QEHVKEVLLAALR---QGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred hHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3666444333332 34567889999999999999999999988754
No 253
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=81.95 E-value=1 Score=49.73 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|+||||||+..+.+.-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 46889999999999999988886443
No 254
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.86 E-value=1.1 Score=48.69 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.. +.+.|.|++|||||+..+.++-.+
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 45 899999999999999998886544
No 255
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=81.80 E-value=1.6 Score=50.22 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=24.9
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+.+=.|+|+|.||||||+.+..+-.+|
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999999888
No 256
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.76 E-value=1 Score=49.69 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|+||||||+..|.+.-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 46889999999999999999887544
No 257
>PLN02796 D-glycerate 3-kinase
Probab=81.73 E-value=1.1 Score=52.54 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=21.3
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 256 SIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
-|-|+|.||||||+.++.|...|..
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL~~ 126 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLFNA 126 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4788999999999999988877653
No 258
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=81.65 E-value=1.4 Score=53.57 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=28.6
Q ss_pred chhHHHHHHHHHHHHc-----CceEEEEEcCCCCCChhHHHH
Q 001068 236 HVYAITDTAIREMIRD-----EVNQSIIISGESGAGKTETAK 272 (1166)
Q Consensus 236 HiyavA~~Ay~~m~~~-----~~~QsIiisGESGaGKTe~~K 272 (1166)
||=.-.+..+...+.+ ...+.|.|.|+||||||+..+
T Consensus 9 hi~r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 9 YVKRKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred eechHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 4444455566666655 678999999999999999998
No 259
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=81.60 E-value=1 Score=49.72 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 456899999999999999988886443
No 260
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=81.54 E-value=1.1 Score=48.33 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 356889999999999999999886443
No 261
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=81.49 E-value=1.8 Score=54.88 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=28.6
Q ss_pred HHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 246 ~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
..++....+++|+|.|++|+|||+.++.+......
T Consensus 167 ~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~ 201 (615)
T TIGR02903 167 LAKVASPFPQHIILYGPPGVGKTTAARLALEEAKK 201 (615)
T ss_pred HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 34445667899999999999999999999877544
No 262
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=81.46 E-value=0.92 Score=55.97 Aligned_cols=29 Identities=45% Similarity=0.621 Sum_probs=24.5
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
-++||.|||.||+|||||+- +-|||..-|
T Consensus 368 ir~n~vvvivgETGSGKTTQ---l~QyL~edG 396 (1042)
T KOG0924|consen 368 IRENQVVVIVGETGSGKTTQ---LAQYLYEDG 396 (1042)
T ss_pred HhhCcEEEEEecCCCCchhh---hHHHHHhcc
Confidence 36799999999999999974 678888765
No 263
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=81.39 E-value=0.88 Score=57.16 Aligned_cols=29 Identities=21% Similarity=0.510 Sum_probs=25.3
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.+.|.|.|.|+||||||+..|+++..+.-
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~p 395 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYDI 395 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 45799999999999999999999887654
No 264
>PRK06620 hypothetical protein; Validated
Probab=81.38 E-value=1.9 Score=47.22 Aligned_cols=20 Identities=40% Similarity=0.516 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCChhHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIA 274 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~i 274 (1166)
.+++|.|++|+|||+.++.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~ 64 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIW 64 (214)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 78999999999999988864
No 265
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.37 E-value=1.1 Score=48.81 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~ 276 (1166)
..+.+.|.|++|||||+..+.+.-
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 468889999999999999998854
No 266
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.35 E-value=1.7 Score=54.11 Aligned_cols=43 Identities=23% Similarity=0.456 Sum_probs=33.1
Q ss_pred CCchhHHHHHHHHHHHH-cCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 234 SPHVYAITDTAIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 234 ~PHiyavA~~Ay~~m~~-~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.+|+-.. ..+++. .+-++++|++|++|.|||+.++.+.+.|-+
T Consensus 21 q~~v~~~----L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 21 QEHVVRA----LTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred cHHHHHH----HHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4666553 444444 456788999999999999999999998865
No 267
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=81.34 E-value=1.3 Score=48.07 Aligned_cols=44 Identities=34% Similarity=0.530 Sum_probs=34.7
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHHhccCCCCchhhhhhhhHHHHhhc
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFG 302 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~ie~~il~snpiLEAFG 302 (1166)
+=.|+|.|.=|+|||+.++.+-++|-+ .+..++..=||+|+-|=
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~-----~~~~E~vednp~L~~FY 47 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGF-----KVFYELVEDNPFLDLFY 47 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCC-----ceeeecccCChHHHHHH
Confidence 457999999999999999999888763 34455666678887774
No 268
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=81.31 E-value=1.1 Score=49.46 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|+||||||+..|.+.-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 5688999999999999999988643
No 269
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.29 E-value=1.1 Score=48.31 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|++|||||+..+.+.-.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4578899999999999999988643
No 270
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=81.27 E-value=1.1 Score=49.59 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
...+.+.|.|+||||||+..|.+.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999999887543
No 271
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=81.23 E-value=1.1 Score=48.59 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~ 276 (1166)
...+.+.|.|+||||||+..|.+.-
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3568899999999999999988854
No 272
>PRK00023 cmk cytidylate kinase; Provisional
Probab=81.20 E-value=1.2 Score=49.16 Aligned_cols=26 Identities=38% Similarity=0.509 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
+-.|.|+|.+|||||+.++.+.+.|-
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998873
No 273
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=81.19 E-value=1.3 Score=50.23 Aligned_cols=41 Identities=17% Similarity=0.236 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 240 ITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 240 vA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.++.....+...+.-++++|.|.+|||||+..+.+...+..
T Consensus 97 ~~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 97 AADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred cHHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 35555555665555589999999999999999988776654
No 274
>PRK14530 adenylate kinase; Provisional
Probab=81.17 E-value=1.2 Score=48.56 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.6
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa 279 (1166)
-|+|.|.+|||||+.++.+.+.+-
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999988763
No 275
>PRK13695 putative NTPase; Provisional
Probab=81.17 E-value=1.4 Score=46.23 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.8
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHh
Q 001068 257 IIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa~ 280 (1166)
|+|+|++|+|||+..+.+...+..
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999888765
No 276
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=81.15 E-value=1.1 Score=56.36 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
.--|+|+|+.|||||++...+|.++.
T Consensus 316 ~Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 316 QGMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhC
Confidence 35688999999999999999988874
No 277
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=81.12 E-value=1.5 Score=46.64 Aligned_cols=30 Identities=27% Similarity=0.323 Sum_probs=24.9
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
...+.|+|.|.+|.|||..+..+.+.++.-
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~ 74 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK 74 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC
Confidence 356889999999999999999999988873
No 278
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=81.07 E-value=1.2 Score=47.87 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=21.6
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 256 SIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
.++|.|.||||||...+.++.-|+..
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~~ 65 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLALT 65 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHHH
Confidence 79999999999999999998888764
No 279
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=81.06 E-value=1.1 Score=48.24 Aligned_cols=26 Identities=38% Similarity=0.520 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
...+.+.|.|+||||||+..+.+.-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34688999999999999999988543
No 280
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=81.03 E-value=1.2 Score=48.29 Aligned_cols=26 Identities=19% Similarity=0.525 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
...+.+.|.|+||||||+..+.++..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35788999999999999998888643
No 281
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=81.02 E-value=1.8 Score=48.85 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=29.8
Q ss_pred CchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 235 PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 235 PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
|++=.+-+.+...+.. +..|+|.|++|+|||+.++.+-+.
T Consensus 5 ~~~~~l~~~~l~~l~~---g~~vLL~G~~GtGKT~lA~~la~~ 44 (262)
T TIGR02640 5 DAVKRVTSRALRYLKS---GYPVHLRGPAGTGKTTLAMHVARK 44 (262)
T ss_pred HHHHHHHHHHHHHHhc---CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 5555556666555543 578999999999999999887653
No 282
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=81.01 E-value=1.2 Score=48.28 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|+||||||+..|.+.-.+
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56889999999999999988886543
No 283
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=81.01 E-value=1.1 Score=49.22 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
..+.+.|.|+||||||+..|.+.-.+.
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467899999999999999999876543
No 284
>PF13479 AAA_24: AAA domain
Probab=81.00 E-value=1 Score=49.19 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=18.9
Q ss_pred ceEEEEEcCCCCCChhHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIA 274 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~i 274 (1166)
++..|+|.|+||+|||+.++.+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 5789999999999999876654
No 285
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=80.99 E-value=1.4 Score=47.61 Aligned_cols=28 Identities=29% Similarity=0.319 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
++.|++.|.+|+|||+|+-.+-.|+...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 4679999999999999987777777654
No 286
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=80.98 E-value=1.2 Score=46.58 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
...+.+.|.|++|||||+..+.++-.+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3568899999999999999998876543
No 287
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=80.97 E-value=0.98 Score=57.86 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
..|.|-|.|+||||||+.+|+++.++.-
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3588999999999999999999876554
No 288
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=80.86 E-value=1.5 Score=45.72 Aligned_cols=53 Identities=30% Similarity=0.392 Sum_probs=39.7
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHHhccCCCCchhhhhhhhHHHHhhcCcccCCCCCCCccccEEEEEEcCCCceeccee
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANI 334 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~~~~~~~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~F~~~g~i~Ga~i 334 (1166)
=.|.|||..|+||||.++.+...|..-+- .-|=|+.-.....|+-+|.+|
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~------------------------------kvgGf~t~EVR~gGkR~GF~I 55 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGY------------------------------KVGGFITPEVREGGKRIGFKI 55 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCc------------------------------eeeeEEeeeeecCCeEeeeEE
Confidence 46999999999999999999999886431 234455555556788888877
Q ss_pred eee
Q 001068 335 QTF 337 (1166)
Q Consensus 335 ~~y 337 (1166)
.+.
T Consensus 56 vdl 58 (179)
T COG1618 56 VDL 58 (179)
T ss_pred EEc
Confidence 764
No 289
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=80.79 E-value=0.83 Score=50.13 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
...+.+.|.|+||||||+..+.+.-.+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3568899999999999999998875543
No 290
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=80.78 E-value=2 Score=51.82 Aligned_cols=61 Identities=21% Similarity=0.189 Sum_probs=37.1
Q ss_pred CCCHHHHHHhhcCC-CC-CCchhHHHHHHHHHHHHcC-----------ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 218 LYGNYYIEAYKSKS-IE-SPHVYAITDTAIREMIRDE-----------VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 218 iY~~~~~~~y~~~~-~~-~PHiyavA~~Ay~~m~~~~-----------~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+.++..+..|-+.. .+ .+-+=+++..+|.++.+-. ...+|+|.|++|+|||+.++.+-+.+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 45666665554432 12 2333345555554332221 24789999999999999999886554
No 291
>PF13173 AAA_14: AAA domain
Probab=80.77 E-value=1.4 Score=43.86 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
++.++|.|.-|+|||+.++.+++++.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 46799999999999999999998876
No 292
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=80.75 E-value=1.2 Score=48.54 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
...+.+.|.|+||||||+..+.++-.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45788999999999999998888643
No 293
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.71 E-value=1.2 Score=46.64 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
...+.+.|.|+||||||+..|.+.-.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34688999999999999988887543
No 294
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=80.71 E-value=1.2 Score=49.59 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 356889999999999999999876443
No 295
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=80.70 E-value=1.3 Score=46.07 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.2
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
+.|+|+|-+|||||+.++.+-+.|.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999999987763
No 296
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=80.67 E-value=1.5 Score=46.70 Aligned_cols=27 Identities=37% Similarity=0.522 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
..-|+|.|-.|||||+.++.+-++|..
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 356999999999999999999888765
No 297
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=80.66 E-value=2.4 Score=54.75 Aligned_cols=38 Identities=34% Similarity=0.399 Sum_probs=29.0
Q ss_pred HHHHHHH-cCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 244 AIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 244 Ay~~m~~-~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
++...+. ...+.++.|+|.+|.|||.+++.+++-|...
T Consensus 770 fL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqee 808 (1164)
T PTZ00112 770 FLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHK 808 (1164)
T ss_pred HHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4444444 3445667799999999999999999998653
No 298
>PRK10908 cell division protein FtsE; Provisional
Probab=80.63 E-value=1.2 Score=48.59 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
...+.+.|.|+||||||+..+.+.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999999988643
No 299
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=80.62 E-value=1 Score=47.46 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~ 276 (1166)
..+..|+|.||+|+||+..++.|-+
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 4468999999999999999988855
No 300
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=80.60 E-value=1.2 Score=49.27 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|+||||||+..|.++-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4688999999999999999888644
No 301
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=80.58 E-value=1.2 Score=51.17 Aligned_cols=23 Identities=43% Similarity=0.640 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCChhHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~y 277 (1166)
-.|+|+|+||+||||++--+++.
T Consensus 147 ~GvLi~G~SG~GKSelALeLi~r 169 (308)
T PRK05428 147 IGVLITGESGIGKSETALELIKR 169 (308)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 67899999999999999888876
No 302
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=80.52 E-value=1.2 Score=48.39 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|++|||||+..+.+.-.
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4688999999999999998888543
No 303
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.51 E-value=1.8 Score=54.34 Aligned_cols=53 Identities=26% Similarity=0.444 Sum_probs=38.5
Q ss_pred HHHhhcCCCC----CCchhHHHHHHHHHHHHc-CceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 224 IEAYKSKSIE----SPHVYAITDTAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 224 ~~~y~~~~~~----~PHiyavA~~Ay~~m~~~-~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
..+|+-+... .+|+-.+ +..++.. +-.+++|++|+.|.|||++++.+.++|-+
T Consensus 7 a~KyRP~sf~dIiGQe~v~~~----L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 7 TARYRPQTFAEVAGQETVKAI----LSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHhCCCCHHHhcCCHHHHHH----HHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 3556654432 5777444 3444444 44899999999999999999999999865
No 304
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=80.38 E-value=1.2 Score=48.69 Aligned_cols=26 Identities=31% Similarity=0.403 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|++|||||+..+.+.-.+
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 46899999999999999998886543
No 305
>PRK10646 ADP-binding protein; Provisional
Probab=80.37 E-value=2.9 Score=43.42 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
.-.|++.|+-|||||+-+|.+++.|.
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34788999999999999999998874
No 306
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=80.33 E-value=1.1 Score=49.31 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=16.7
Q ss_pred eEEEEEcCCCCCChhHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIA 274 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~i 274 (1166)
.-.+.|.|+||||||+...++
T Consensus 31 Ge~vaI~GpSGSGKSTLLnii 51 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLL 51 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 456889999999999875544
No 307
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=80.27 E-value=1.3 Score=47.96 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|++|||||+..|.++-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999998887544
No 308
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.22 E-value=2 Score=54.21 Aligned_cols=46 Identities=28% Similarity=0.411 Sum_probs=34.2
Q ss_pred CCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 234 SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 234 ~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
..|+...-..++. ..+..+++||+|++|.|||+.++.+.++|.+..
T Consensus 21 q~~~~~~L~~~i~---~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~ 66 (585)
T PRK14950 21 QEHVVQTLRNAIA---EGRVAHAYLFTGPRGVGKTSTARILAKAVNCTT 66 (585)
T ss_pred CHHHHHHHHHHHH---hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 4666554333332 345689999999999999999999999987543
No 309
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=80.19 E-value=1.3 Score=48.63 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999988886443
No 310
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=80.19 E-value=1.2 Score=48.64 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=17.8
Q ss_pred ceEEEEEcCCCCCChhHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIA 274 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~i 274 (1166)
+-.-++|.|.||||||+..+.+
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3467899999999999876544
No 311
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=80.17 E-value=2.2 Score=47.17 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
....++|.|++|+|||+.+..++.-++.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~ 50 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ 50 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3568999999999999997555544544
No 312
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=80.17 E-value=2 Score=49.29 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=23.8
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.+..+.++|+|++|+|||+.++.+.+.+
T Consensus 27 ~~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 27 QEALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3456889999999999999999887655
No 313
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=80.16 E-value=27 Score=37.95 Aligned_cols=11 Identities=9% Similarity=0.407 Sum_probs=5.6
Q ss_pred cceeecceeee
Q 001068 817 EMYQVGYTKLF 827 (1166)
Q Consensus 817 ~~~~iGkTKVF 827 (1166)
..|.|--|-|-
T Consensus 33 ~eYnITisSIi 43 (290)
T COG4026 33 SEYNITISSII 43 (290)
T ss_pred ccceeEEEeec
Confidence 34665555443
No 314
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=80.12 E-value=1.3 Score=48.82 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|+||||||+..+.+.-.
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999888643
No 315
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=80.07 E-value=1.3 Score=46.99 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCCChhHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il 275 (1166)
...-+.|.|+||||||+..+.++
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45678999999999999999774
No 316
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=80.05 E-value=1.5 Score=47.32 Aligned_cols=30 Identities=30% Similarity=0.496 Sum_probs=22.3
Q ss_pred HcCceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 250 RDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 250 ~~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
....+..|||.|.+|||||+....++..+.
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~ 40 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFG 40 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhcc
Confidence 346789999999999999999988877654
No 317
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=80.04 E-value=1.4 Score=48.34 Aligned_cols=28 Identities=32% Similarity=0.373 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
...+.+.|.|+||||||+..|.+...+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 4678999999999999999998876553
No 318
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=80.04 E-value=1.8 Score=56.64 Aligned_cols=50 Identities=24% Similarity=0.186 Sum_probs=32.3
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhccCCCCchhhhhhhhHHHHhhc
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFG 302 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~ie~~il~snpiLEAFG 302 (1166)
.|-.++|.|.||||||.+++.++..+...++..-+-+.=-...++.+++|
T Consensus 429 ~n~n~~I~G~tGsGKS~~~~~l~~~~~~~g~~v~iiD~~~sy~~l~~~~g 478 (797)
T TIGR02746 429 TNYNIAVVGGSGAGKSFFMQELIVDNLSRGGKVWVIDVGRSYKKLCEMLG 478 (797)
T ss_pred CccceEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHHcC
Confidence 35679999999999999999998766655432111000012344567776
No 319
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=80.03 E-value=1.3 Score=49.77 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|+||||||+..+.++-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46889999999999999999987554
No 320
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.01 E-value=1.6 Score=50.61 Aligned_cols=39 Identities=23% Similarity=0.383 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 241 TDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 241 A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.+.||-.+.-. ...+|+|+|+.|||||+..+.+|.++-.
T Consensus 131 ~~~ayL~~~ie-~~~siii~G~t~sGKTt~lnall~~Ip~ 169 (312)
T COG0630 131 EQAAYLWLAIE-ARKSIIICGGTASGKTTLLNALLDFIPP 169 (312)
T ss_pred HHHHHHHHHHH-cCCcEEEECCCCCCHHHHHHHHHHhCCc
Confidence 34455433322 2578999999999999999999888653
No 321
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=80.01 E-value=1.3 Score=48.77 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=19.7
Q ss_pred CceEEEEEcCCCCCChhHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il 275 (1166)
+..+.+.|.|+||||||+.+.-++
T Consensus 19 ~~Ge~~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 19 PRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHH
Confidence 457899999999999999974333
No 322
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.99 E-value=1.3 Score=50.16 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356899999999999999999886543
No 323
>PRK05973 replicative DNA helicase; Provisional
Probab=79.99 E-value=2 Score=47.90 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=25.7
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
...+.++|.|++|+|||..+-.++...+.-+
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~G 92 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSG 92 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 3568999999999999999988887776543
No 324
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=79.99 E-value=1.3 Score=49.52 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
...+.+.|.|++|||||+..|.+.-.
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35688999999999999999988754
No 325
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=79.94 E-value=1.3 Score=47.29 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|++|||||+..+.++--+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 56889999999999999988886543
No 326
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=79.90 E-value=1.3 Score=48.81 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|.+|||||+..|.+.-.+
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999988887544
No 327
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=79.85 E-value=1.5 Score=48.19 Aligned_cols=24 Identities=46% Similarity=0.594 Sum_probs=21.1
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa 279 (1166)
.|.|.|.||||||+.++.+...|.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987653
No 328
>PLN02348 phosphoribulokinase
Probab=79.85 E-value=2.1 Score=50.80 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
++.--|-|+|-||||||+.++.|.+.|-.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34445568999999999999999888854
No 329
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=79.75 E-value=3.1 Score=48.68 Aligned_cols=32 Identities=25% Similarity=0.216 Sum_probs=28.7
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
.+..-.|-|+|.+|||||+.+..+..+|...+
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g 84 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQG 84 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 67788999999999999999999999998653
No 330
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=79.69 E-value=1.6 Score=47.26 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.9
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
--|.|+|..|||||+..+.+++.|..
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~ 27 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQ 27 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 36889999999999999999988764
No 331
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=79.69 E-value=2.8 Score=47.73 Aligned_cols=41 Identities=20% Similarity=0.393 Sum_probs=26.5
Q ss_pred CchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHH
Q 001068 235 PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 235 PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~ 276 (1166)
|-+=.+.....-.++-. .++.+++.|++|+|||...+.+++
T Consensus 15 pT~dt~r~~~ll~~l~~-~~~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 15 PTVDTVRYSYLLDLLLS-NGRPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp --HHHHHHHHHHHHHHH-CTEEEEEESSTTSSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH-cCCcEEEECCCCCchhHHHHhhhc
Confidence 44434444444444433 378999999999999998777553
No 332
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=79.68 E-value=2.1 Score=50.44 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=26.8
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
+..-..|+|+|++|+|||+.++.+-+||-..
T Consensus 35 ~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~ 65 (350)
T CHL00081 35 DPKIGGVMIMGDRGTGKSTTIRALVDLLPEI 65 (350)
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 4445789999999999999999999998753
No 333
>PRK09087 hypothetical protein; Validated
Probab=79.67 E-value=2.2 Score=47.16 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~ 276 (1166)
.+..++|.|+||+|||+.+..+..
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~ 66 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWRE 66 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 356699999999999988886554
No 334
>PRK13947 shikimate kinase; Provisional
Probab=79.67 E-value=1.5 Score=45.51 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.4
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1166)
.|+|.|-+|||||+.++.+-+-|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 49999999999999999887655
No 335
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=79.57 E-value=1.2 Score=48.56 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=18.8
Q ss_pred EEEEcCCCCCChhHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~y 277 (1166)
-|.|+|.+|||||+.++++..+
T Consensus 7 ~igitG~igsGKSt~~~~l~~~ 28 (208)
T PRK14731 7 LVGVTGGIGSGKSTVCRFLAEM 28 (208)
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 3678999999999999888764
No 336
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=79.57 E-value=1.4 Score=49.37 Aligned_cols=26 Identities=35% Similarity=0.370 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|++|||||+..|+|.-.+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999886544
No 337
>PRK05439 pantothenate kinase; Provisional
Probab=79.50 E-value=2.7 Score=48.70 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=25.8
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
.+.+--|.|+|.+|||||+.++.+...|...
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~ 113 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRW 113 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4556778899999999999999988877644
No 338
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=79.50 E-value=0.95 Score=51.71 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
..+.+.|.|+||||||+..|.++-.+.
T Consensus 36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 62 (289)
T PRK13645 36 KNKVTCVIGTTGSGKSTMIQLTNGLII 62 (289)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 468899999999999999999876543
No 339
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=79.47 E-value=2.1 Score=47.15 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
+...++|+|++|||||..+.+++.-.+.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~ 51 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK 51 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh
Confidence 5688999999999999999888655444
No 340
>PRK04195 replication factor C large subunit; Provisional
Probab=79.43 E-value=1.8 Score=53.33 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+++|+|++|+|||+.++.+.+.+
T Consensus 38 ~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 38 PKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 36899999999999999999987765
No 341
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=79.43 E-value=1.4 Score=47.32 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
...+.+.|.|+||||||+..++++-.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35688999999999999999988643
No 342
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.40 E-value=1.4 Score=48.57 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|+||||||+..+.+.-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999886443
No 343
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=79.39 E-value=1.4 Score=48.83 Aligned_cols=26 Identities=38% Similarity=0.426 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
...+.+.|.|++|||||+..+.|+-.
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35689999999999999999988643
No 344
>PRK01184 hypothetical protein; Provisional
Probab=79.39 E-value=1.3 Score=46.71 Aligned_cols=18 Identities=44% Similarity=0.573 Sum_probs=16.0
Q ss_pred EEEEcCCCCCChhHHHHH
Q 001068 256 SIIISGESGAGKTETAKI 273 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~ 273 (1166)
-|+|+|.+|||||+.+++
T Consensus 3 ~i~l~G~~GsGKsT~a~~ 20 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSKI 20 (184)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999884
No 345
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.33 E-value=1.4 Score=47.65 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|++|||||+..|.++..+
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999988886543
No 346
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=79.30 E-value=1.4 Score=48.28 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|.+|||||+..++++-.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4689999999999999998887643
No 347
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=79.26 E-value=1.5 Score=47.39 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
....+.|.|++|||||+..+.++..+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45788999999999999999887544
No 348
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.24 E-value=2.5 Score=50.69 Aligned_cols=38 Identities=29% Similarity=0.443 Sum_probs=31.4
Q ss_pred HHHHHHHc-CceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 244 AIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 244 Ay~~m~~~-~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
..+.++.. +-++++|++|+.|.|||+.++.+-++|-+-
T Consensus 27 ~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 27 TIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred HHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 45666655 567899999999999999999999888653
No 349
>PRK06526 transposase; Provisional
Probab=79.22 E-value=1.6 Score=49.09 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=25.4
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
..+.|+|.|.+|+|||..+..+...++..+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g 126 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAG 126 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCC
Confidence 356799999999999999999988877643
No 350
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=79.22 E-value=2.1 Score=46.53 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=27.5
Q ss_pred HHHHHHcC--ceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 245 IREMIRDE--VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 245 y~~m~~~~--~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
...|+..+ ....++|+|++|+|||+.+.+++..++..
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~ 46 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ 46 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 44455433 35678999999999999999887776543
No 351
>PRK09099 type III secretion system ATPase; Provisional
Probab=79.22 E-value=4.4 Score=49.20 Aligned_cols=38 Identities=13% Similarity=0.088 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 240 ITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 240 vA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..-.+...++.-.+.|.+.|.|.||+|||+.++.+..+
T Consensus 149 TGi~~ID~l~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~ 186 (441)
T PRK09099 149 TGVRIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARG 186 (441)
T ss_pred CCceeccceeeecCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33446666666678999999999999999988776543
No 352
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.21 E-value=1.4 Score=49.06 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 356889999999999999999987544
No 353
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=79.17 E-value=2.4 Score=47.07 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
...+|+|+|++|||||+.+-.++..-+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~ 46 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL 46 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999998766554433
No 354
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=79.14 E-value=1.4 Score=48.99 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|+||||||+..+.+.-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 46889999999999999988886443
No 355
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=79.14 E-value=2.1 Score=46.21 Aligned_cols=28 Identities=29% Similarity=0.262 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
..+.+.|+|++|||||..+..+....+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~ 38 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR 38 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999998766555544
No 356
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=79.11 E-value=1.4 Score=49.59 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
..+.+.|.|+||||||+..|.|+-.+.
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467899999999999999998876543
No 357
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=79.10 E-value=1.7 Score=46.91 Aligned_cols=47 Identities=26% Similarity=0.340 Sum_probs=31.1
Q ss_pred EEEcCCCCCChhHHHHHHHHHHH--hccCCCCchhhhhhh-----hHHHHhhcCc
Q 001068 257 IIISGESGAGKTETAKIAMQYLA--ALGGGSGIEYEILKT-----NPILEAFGNA 304 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa--~~~~~~~ie~~il~s-----npiLEAFGNA 304 (1166)
|.|+|..|||||+.++++-+.+. .+. ...+..+++.. ..|.+.||..
T Consensus 4 i~itG~~gsGKst~~~~l~~~~g~~~i~-~D~~~~~~~~~~~~~~~~l~~~fg~~ 57 (195)
T PRK14730 4 IGLTGGIASGKSTVGNYLAQQKGIPILD-ADIYAREALAPGSPILKAILQRYGNK 57 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCeEee-CcHHHHHHHhcCchHHHHHHHHhCHH
Confidence 78999999999999998877531 121 12344444431 4577788874
No 358
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=79.03 E-value=2.1 Score=53.25 Aligned_cols=61 Identities=33% Similarity=0.496 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhccCCC--Cc----hhhhhh---hhHHHHhhcC
Q 001068 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGS--GI----EYEILK---TNPILEAFGN 303 (1166)
Q Consensus 237 iyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~--~i----e~~il~---snpiLEAFGN 303 (1166)
||+.-+.-...+ ..||.+||.||+|||||+ .|=|||...|-.. .| -.+|.+ |.-|=|..|+
T Consensus 52 I~~~r~~il~~v---e~nqvlIviGeTGsGKST---QipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~ 121 (674)
T KOG0922|consen 52 IYKYRDQILYAV---EDNQVLIVIGETGSGKST---QIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGC 121 (674)
T ss_pred HHHHHHHHHHHH---HHCCEEEEEcCCCCCccc---cHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCC
Confidence 444444433333 358999999999999997 4779998765322 11 123322 5566677665
No 359
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=79.00 E-value=1.8 Score=41.93 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=23.2
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 256 SIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
.++|.|++|+|||..+-.++..+...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~ 27 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS 27 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc
Confidence 37899999999999999999888765
No 360
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=78.96 E-value=1.8 Score=48.02 Aligned_cols=41 Identities=32% Similarity=0.403 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHc-CceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 240 ITDTAIREMIRD-EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 240 vA~~Ay~~m~~~-~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
+.+++|..|... ..+.+-.+.|++|+||||++|.+=+.|..
T Consensus 17 lt~r~~~~l~~al~~~~~~~~~GpagtGKtetik~La~~lG~ 58 (231)
T PF12774_consen 17 LTDRCFLTLTQALSLNLGGALSGPAGTGKTETIKDLARALGR 58 (231)
T ss_dssp HHHHHHHHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHhCC
Confidence 457777776542 45688899999999999999988776653
No 361
>PRK04328 hypothetical protein; Provisional
Probab=78.96 E-value=2.3 Score=47.65 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=24.8
Q ss_pred HHHHHHcC--ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 245 IREMIRDE--VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 245 y~~m~~~~--~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...|+..+ ...+|+|+|++|||||..+-.++..-
T Consensus 12 LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~ 47 (249)
T PRK04328 12 MDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNG 47 (249)
T ss_pred HHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34444433 57899999999999999877665443
No 362
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=78.93 E-value=1.5 Score=46.28 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|.||||||+..+.+.-.+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56889999999999999888886543
No 363
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=78.92 E-value=1.4 Score=48.07 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|++|||||+..+++.-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4688999999999999998888644
No 364
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=78.91 E-value=1.5 Score=49.57 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..+.++-.+
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 357889999999999999999987643
No 365
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=78.85 E-value=1.4 Score=48.27 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|++|||||+..+.+.-.
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4688999999999999999988643
No 366
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=78.80 E-value=1.3 Score=47.80 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCChhHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il 275 (1166)
..++|+|++|||||+..|.+.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~ 46 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIG 46 (199)
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 788999999999999999984
No 367
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=78.78 E-value=1.5 Score=46.17 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|.+|||||+..|.+.-.+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 46889999999999999988886543
No 368
>PRK07429 phosphoribulokinase; Provisional
Probab=78.77 E-value=1.5 Score=51.28 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+.=-|-|+|.||||||+.++.+...|
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll 32 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLL 32 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHh
Confidence 34467789999999999998887655
No 369
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.75 E-value=1.5 Score=46.87 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~ 276 (1166)
...+.+.|.|+||||||+..|.+.-
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3568899999999999999888863
No 370
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=78.70 E-value=1.5 Score=47.62 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|+||||||+..|.+.-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45788999999999999988886543
No 371
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=78.70 E-value=1.8 Score=49.33 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=24.9
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
.|.|+|.||||||+.+..++..|...|
T Consensus 3 ~i~i~G~~gSGKTTLi~~Li~~L~~~G 29 (274)
T PRK14493 3 VLSIVGYKATGKTTLVERLVDRLSGRG 29 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 488999999999999999999999865
No 372
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.68 E-value=2.4 Score=52.51 Aligned_cols=54 Identities=17% Similarity=0.393 Sum_probs=39.4
Q ss_pred HHHhhcCCCC----CCchhHHHHHHHHHHH-HcCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 224 IEAYKSKSIE----SPHVYAITDTAIREMI-RDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 224 ~~~y~~~~~~----~PHiyavA~~Ay~~m~-~~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
.++|+-+... .+||-. +..+++ ..+-++++|++|..|.|||++++.+.+.|-+.
T Consensus 7 ~~kyRP~~f~divGq~~v~~----~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVVR----ALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred HHHHCCCCHHHhcCCHHHHH----HHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4566654432 477644 444444 45678999999999999999999999988653
No 373
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=78.66 E-value=1.1 Score=47.77 Aligned_cols=29 Identities=34% Similarity=0.416 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.....+.|.|+||||||+..|.+.-.+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 51 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIP 51 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 45678899999999999999988766543
No 374
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=78.64 E-value=1.1 Score=50.29 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=27.0
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1166)
...+.+.|.|+||||||+..|.++-.+..-+|
T Consensus 24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G 55 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLG 55 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 56789999999999999999999888765443
No 375
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=78.52 E-value=1.5 Score=50.29 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~y 277 (1166)
...|+|+|+||+||||++--+++.
T Consensus 146 g~gvli~G~sg~GKS~lal~Li~r 169 (304)
T TIGR00679 146 GVGVLITGKSGVGKSETALELINR 169 (304)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 478999999999999999888775
No 376
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=78.50 E-value=2.4 Score=52.58 Aligned_cols=37 Identities=30% Similarity=0.518 Sum_probs=26.9
Q ss_pred HHHHHHHHcCc-eEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 243 TAIREMIRDEV-NQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 243 ~Ay~~m~~~~~-~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
.....|..... .+-+|++|.+|+|||++.+.+.+-|.
T Consensus 33 ~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 33 SWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred HHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34455554443 45667799999999999999887763
No 377
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=78.50 E-value=1.5 Score=47.10 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|++|||||+..+.++-.+
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 456899999999999999998886543
No 378
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=78.45 E-value=0.9 Score=45.88 Aligned_cols=26 Identities=31% Similarity=0.631 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+..|+|+||+|+||+..++.+-.+
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 45778999999999999987765443
No 379
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=78.41 E-value=1.5 Score=49.56 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~ 276 (1166)
..+.+.|.|+||||||+..|.|.-
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~l~G 60 (268)
T PRK10419 37 SGETVALLGRSGCGKSTLARLLVG 60 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 468999999999999998888753
No 380
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=78.37 E-value=1.5 Score=48.86 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|+||||||+..+.+.-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 28 PGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46889999999999999888776443
No 381
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=78.31 E-value=1.6 Score=48.32 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|++|||||+..+.++-.+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56889999999999999999887654
No 382
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=78.28 E-value=1.6 Score=46.25 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|++|||||+..+.+.-.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999888876443
No 383
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=78.24 E-value=1.6 Score=46.21 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.8
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 001068 257 IIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yL 278 (1166)
|+|.|.+|||||+.++.+-+.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8999999999999999887764
No 384
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=78.19 E-value=1.6 Score=49.35 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..+.|.-.+
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 357889999999999999988886543
No 385
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=78.14 E-value=1.6 Score=47.46 Aligned_cols=27 Identities=26% Similarity=0.462 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999999986544
No 386
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=78.10 E-value=1.6 Score=48.22 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
...+.+.|.|+||||||+..+.+.-.+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFYV 53 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4578899999999999999998875543
No 387
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=78.09 E-value=1.6 Score=48.45 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|+||||||+..|.+.-.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4688999999999999998888643
No 388
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=78.08 E-value=2.6 Score=52.92 Aligned_cols=44 Identities=32% Similarity=0.385 Sum_probs=34.0
Q ss_pred CchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 235 PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 235 PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
|-|.++-..+|.. +.++.-.|+|+|.||||||+.++.+...|..
T Consensus 375 peV~~iL~~~~~~--r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 375 PEVVAELRRTYPP--RHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred HHHHHHHHHHhcc--ccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 6666666666543 3445568999999999999999999988865
No 389
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=78.03 E-value=1.6 Score=47.50 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..+.+.--+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 457899999999999999988876443
No 390
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=78.01 E-value=1.3 Score=55.37 Aligned_cols=31 Identities=19% Similarity=0.432 Sum_probs=26.0
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
+..+.|.|.|+||||||+..|.++..+..-+
T Consensus 356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~ 386 (571)
T TIGR02203 356 EPGETVALVGRSGSGKSTLVNLIPRFYEPDS 386 (571)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCCCC
Confidence 4578999999999999999999987765433
No 391
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=77.98 E-value=1.7 Score=46.55 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|++|||||+..+.+.-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4688999999999999998887643
No 392
>PRK07952 DNA replication protein DnaC; Validated
Probab=77.97 E-value=2.5 Score=47.30 Aligned_cols=29 Identities=34% Similarity=0.411 Sum_probs=26.2
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
.+.++++|.+|+|||+.+..+..+|...+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g 127 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRG 127 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 46899999999999999999999998754
No 393
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=77.97 E-value=1.6 Score=48.19 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..|.++-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356899999999999999988886544
No 394
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=77.92 E-value=2.4 Score=50.28 Aligned_cols=40 Identities=35% Similarity=0.487 Sum_probs=33.9
Q ss_pred HHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 001068 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1166)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1166)
++...++...+=.|+|.|.+|+|||.++|++++-|-..+.
T Consensus 32 ~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~ 71 (366)
T COG1474 32 FLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSA 71 (366)
T ss_pred HHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc
Confidence 4667777777777999999999999999999999887654
No 395
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=77.92 E-value=1.7 Score=48.51 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|+||||||+..+.+.-.+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 56899999999999999999887544
No 396
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=77.90 E-value=1.2 Score=56.16 Aligned_cols=30 Identities=23% Similarity=0.415 Sum_probs=25.5
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
...+.|.|.|+||||||+.+|.++..+.-.
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~ 388 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVFDPQ 388 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 457889999999999999999998776543
No 397
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.84 E-value=1.3 Score=48.58 Aligned_cols=27 Identities=30% Similarity=0.597 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...|.+.|.|++|||||+..+.+.-.+
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 456889999999999999998886544
No 398
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=77.79 E-value=1.6 Score=48.61 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|+||||||+..|.+.-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4688999999999999998888543
No 399
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=77.76 E-value=2.3 Score=45.77 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=23.8
Q ss_pred HHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
|...++.... ..+|.|..|+|||++...++.++
T Consensus 9 Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 9 AIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 4444444332 68999999999999999998888
No 400
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=77.75 E-value=1.6 Score=49.37 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
..+.+.|.|+||||||+..+.|...+.
T Consensus 49 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 49 ENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 468899999999999999999987654
No 401
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.69 E-value=1.7 Score=48.20 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~ 276 (1166)
...+.+.|.|+||||||+..+.+.-
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINR 49 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3568899999999999999888754
No 402
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=77.68 E-value=1.7 Score=48.54 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 346889999999999999988876543
No 403
>PRK00279 adk adenylate kinase; Reviewed
Probab=77.65 E-value=1.8 Score=47.19 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.1
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa 279 (1166)
-|+|.|.+|||||+.++.+-+.+-
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999877654
No 404
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=77.62 E-value=1.7 Score=48.34 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 346889999999999999999886544
No 405
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=77.61 E-value=2.7 Score=48.70 Aligned_cols=42 Identities=21% Similarity=0.242 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 237 iyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+..+.+.-+.....-..+..|+|+|-+|||||+.++.+-+.|
T Consensus 116 ~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 116 VRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred HHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 334444433333344567899999999999999999987765
No 406
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=77.60 E-value=1.6 Score=48.91 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 356889999999999999999987544
No 407
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=77.60 E-value=1.4 Score=55.18 Aligned_cols=29 Identities=21% Similarity=0.503 Sum_probs=25.4
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
++.+.|.|.|+||||||+..|.++..+.-
T Consensus 364 ~~Ge~i~IvG~sGsGKSTLlklL~gl~~p 392 (576)
T TIGR02204 364 RPGETVALVGPSGAGKSTLFQLLLRFYDP 392 (576)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 56799999999999999999999886653
No 408
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=77.59 E-value=1.7 Score=47.21 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.8
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 001068 257 IIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yL 278 (1166)
|+|.|.+|||||+.++.+-+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8999999999999999987654
No 409
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=77.56 E-value=1.7 Score=48.58 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|+||||||+..|.+.-.+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 32 KNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 46899999999999999999886544
No 410
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=77.55 E-value=2 Score=46.98 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
++..++|+|++|+|||..+..++..-+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~ 44 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGL 44 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhh
Confidence 568999999999999998776554333
No 411
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=77.55 E-value=1.6 Score=45.37 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=18.7
Q ss_pred EEEcCCCCCChhHHHHHHHHH
Q 001068 257 IIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~y 277 (1166)
++|+|.+|||||+..+.+++.
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 689999999999999987765
No 412
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=77.47 E-value=1.7 Score=47.44 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|++|||||+..+.++..+
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999999887554
No 413
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=77.46 E-value=1.7 Score=48.65 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 27 QRGRVLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999988886544
No 414
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=77.42 E-value=4.7 Score=51.68 Aligned_cols=58 Identities=19% Similarity=0.294 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 001068 973 AALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSE 1034 (1166)
Q Consensus 973 ~~l~ekeeen~~L~~eL~~~e~r~~E~e~~~~~~ee~lqkq~~~LQ~~l~~lk~~Le~~e~~ 1034 (1166)
..+.+++.+++.|+.++..+......-...+..+| +++.+.+.....++++|.++..+
T Consensus 460 ~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LE----krL~eE~~~R~~lEkQL~eErk~ 517 (697)
T PF09726_consen 460 SELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLE----KRLAEERRQRASLEKQLQEERKA 517 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554444444333344443 33333333334444444443333
No 415
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=77.42 E-value=1.8 Score=45.17 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|.||||||+..+.++-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46889999999999999999886543
No 416
>PRK00625 shikimate kinase; Provisional
Probab=77.39 E-value=1.9 Score=45.67 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.8
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1166)
-|+|.|-.|||||+.++.+-+.|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 39999999999999999997775
No 417
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=77.36 E-value=1.8 Score=46.46 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999888886543
No 418
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=77.34 E-value=2.3 Score=47.89 Aligned_cols=28 Identities=25% Similarity=0.181 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
....++|+|++|+|||..+-+++...+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~ 62 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS 62 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4688999999999999987776655544
No 419
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=77.30 E-value=1.6 Score=45.84 Aligned_cols=28 Identities=36% Similarity=0.578 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
...+.+.|.|++|||||+..+.+.-.+.
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 3467899999999999999888876543
No 420
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.29 E-value=1.8 Score=46.79 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
...+.+.|.|++|||||+..+.+.-.+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 4578999999999999999888765543
No 421
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=77.29 E-value=1.3 Score=55.87 Aligned_cols=27 Identities=37% Similarity=0.550 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+..+.+.|.|+||||||+..+.++.++
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467999999999999999999999887
No 422
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=77.26 E-value=1.8 Score=45.30 Aligned_cols=27 Identities=26% Similarity=0.503 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 456889999999999999888876543
No 423
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.25 E-value=2.6 Score=54.78 Aligned_cols=52 Identities=19% Similarity=0.441 Sum_probs=37.7
Q ss_pred HHhhcCCCC----CCchhHHHHHHHHHHHH-cCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 225 EAYKSKSIE----SPHVYAITDTAIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 225 ~~y~~~~~~----~PHiyavA~~Ay~~m~~-~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
++||-.... ..||-.. +++++. .+-.+++||+|+.|.|||++++++.+.|-+
T Consensus 8 eKyRP~tFddIIGQe~Iv~~----LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHA----LTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHH----HHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 456544432 4777544 444444 466788899999999999999999998865
No 424
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=77.23 E-value=2.8 Score=53.09 Aligned_cols=54 Identities=20% Similarity=0.421 Sum_probs=39.1
Q ss_pred HHHhhcCCCC----CCchhHHHHHHHHHHHH-cCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 224 IEAYKSKSIE----SPHVYAITDTAIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 224 ~~~y~~~~~~----~PHiyavA~~Ay~~m~~-~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
.++|+-+... .+|+.. +...++. ++-.+++|++|+.|.|||+.++.+.+.|-+.
T Consensus 7 a~KyRP~~f~divGQe~vv~----~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 7 ARKWRPQTFAEVVGQEHVLT----ALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred HHHhCCCCHHHhcCcHHHHH----HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 3556544432 577765 4444444 4567889999999999999999999988763
No 425
>PRK05642 DNA replication initiation factor; Validated
Probab=77.19 E-value=3.9 Score=45.40 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
-.++|.|++|+|||+.+..+..++...
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~ 72 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR 72 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 458999999999999999888777643
No 426
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=77.19 E-value=1.8 Score=46.64 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|++|||||+..+.++..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999999886543
No 427
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=77.19 E-value=1.7 Score=47.77 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
...+.+.|.|++|||||+..+.++-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999998887643
No 428
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=77.17 E-value=3 Score=45.69 Aligned_cols=28 Identities=21% Similarity=0.101 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
+...++|.|++|+|||+.+..++...+.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~ 46 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR 46 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh
Confidence 4688999999999999999887655444
No 429
>CHL00181 cbbX CbbX; Provisional
Probab=77.16 E-value=2.2 Score=48.91 Aligned_cols=28 Identities=32% Similarity=0.442 Sum_probs=24.5
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
-.|++.|++|+|||+.++.+-+++...+
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g 87 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLG 87 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3489999999999999999999887654
No 430
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=77.13 E-value=1.8 Score=48.24 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|+||||||+..+.|.-.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 28 ENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4688999999999999999988653
No 431
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=77.08 E-value=2.8 Score=52.56 Aligned_cols=45 Identities=29% Similarity=0.499 Sum_probs=34.9
Q ss_pred CCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 234 SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 234 ~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
.+|+-..=.+++. ..+-.+++|++|+.|.|||+++|.+.+.|.+.
T Consensus 21 q~~v~~~L~~~i~---~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 21 QEHITKTLKNAIK---QGKISHAYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred cHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 5777654444443 24568899999999999999999999988754
No 432
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=77.08 E-value=1.7 Score=49.09 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 33 NEGEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999888876543
No 433
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=77.01 E-value=2.6 Score=54.22 Aligned_cols=36 Identities=31% Similarity=0.450 Sum_probs=31.3
Q ss_pred HHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.++..+...++||.|++|+|||+.++.+-+++
T Consensus 41 ~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 41 RLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 567777788888899999999999999999998765
No 434
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=77.00 E-value=1.5 Score=47.86 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
...+.+.|.|.+|||||+.++.+.-.+.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3568899999999999999988875543
No 435
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=76.94 E-value=1.8 Score=47.09 Aligned_cols=26 Identities=27% Similarity=0.616 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|+||||||+..+.+.-.+
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 46889999999999999988886543
No 436
>PRK13946 shikimate kinase; Provisional
Probab=76.93 E-value=1.8 Score=45.94 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.+..|++.|-+|||||+..+.+-+.|
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999988776
No 437
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=76.89 E-value=1.9 Score=47.16 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|++|||||+..+.++-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999988886543
No 438
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=76.84 E-value=1.8 Score=49.85 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|++|||||+..|.++-.+
T Consensus 29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 29 RGECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46889999999999999999987544
No 439
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=76.83 E-value=1.8 Score=48.42 Aligned_cols=26 Identities=19% Similarity=0.471 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|++|||||+..+.|.-.+
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56889999999999999999886544
No 440
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=76.82 E-value=1.8 Score=48.05 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|+||||||+..+.+.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4688999999999999998887643
No 441
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=76.80 E-value=1.7 Score=49.53 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..+++.-.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl~ 57 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999999987543
No 442
>PRK06921 hypothetical protein; Provisional
Probab=76.80 E-value=3.7 Score=46.56 Aligned_cols=29 Identities=31% Similarity=0.367 Sum_probs=25.0
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
....+++.|++|+|||..+..|...+...
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 46889999999999999999888877653
No 443
>PRK14532 adenylate kinase; Provisional
Probab=76.77 E-value=1.8 Score=45.89 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.5
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1166)
.|+|.|.+|||||+.++.+-+.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999997665
No 444
>PRK06851 hypothetical protein; Provisional
Probab=76.76 E-value=2.6 Score=49.83 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=27.4
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
...++.+||+|.+|+|||+.++.+++.+...
T Consensus 27 ~~~~~~~il~G~pGtGKStl~~~i~~~~~~~ 57 (367)
T PRK06851 27 DGANRIFILKGGPGTGKSTLMKKIGEEFLEK 57 (367)
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4568999999999999999999999988764
No 445
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=76.73 E-value=1.7 Score=49.08 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|+||||||+..|.+.-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 26 LSPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4688999999999999998887543
No 446
>PRK13949 shikimate kinase; Provisional
Probab=76.70 E-value=2 Score=45.21 Aligned_cols=24 Identities=38% Similarity=0.464 Sum_probs=21.3
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa 279 (1166)
.|+|.|..|||||+.++.+-+.|-
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 599999999999999998877663
No 447
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=76.64 E-value=2.3 Score=55.54 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=26.3
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1166)
.|-.++|.|.||||||+.++.++..+...++
T Consensus 433 ~~~n~~I~G~tGsGKS~~~~~l~~~~~~~~~ 463 (785)
T TIGR00929 433 VLGHTLIFGPTGSGKTTLLNFLLAQMQKYGG 463 (785)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhhccCC
Confidence 3788999999999999999999877766544
No 448
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=76.63 E-value=1.4 Score=49.55 Aligned_cols=38 Identities=16% Similarity=0.080 Sum_probs=29.9
Q ss_pred HHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
+|...|..-++.|-++|.|++|+|||+.++.+.+.+..
T Consensus 5 ~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 5 RVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred hheeeecccCCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 34445556678899999999999999998888776543
No 449
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=76.62 E-value=1.8 Score=48.16 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~ 276 (1166)
...+.+.|.|+||||||+..+.|.-
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 29 NQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3568999999999999999888854
No 450
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=76.62 E-value=1.8 Score=47.75 Aligned_cols=27 Identities=19% Similarity=0.481 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|++|||||+..+.++-.+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 356899999999999999999887554
No 451
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=76.59 E-value=1.9 Score=44.09 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|++|||||+..+.+...+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 46888999999999999988875443
No 452
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=76.58 E-value=2.5 Score=43.57 Aligned_cols=27 Identities=37% Similarity=0.447 Sum_probs=23.5
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHhccC
Q 001068 257 IIISGESGAGKTETAKIAMQYLAALGG 283 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa~~~~ 283 (1166)
|.++|.+|||||+.++.+..++...+.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~ 28 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGK 28 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCC
Confidence 788999999999999999988876543
No 453
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=76.57 E-value=2.1 Score=51.35 Aligned_cols=32 Identities=22% Similarity=0.538 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhccCC
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAALGGG 284 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~~~ 284 (1166)
.-|.|-+-|+|||||++.++++++|+-.-+|+
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGs 594 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGS 594 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhhccCce
Confidence 34899999999999999999999998776653
No 454
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=76.57 E-value=1.9 Score=48.40 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|++|||||+..+.|.-.+
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356889999999999999999887554
No 455
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=76.51 E-value=1.4 Score=55.62 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=24.9
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
+..|.|.|.|+||||||+..|.++..+.-
T Consensus 365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p 393 (592)
T PRK10790 365 PSRGFVALVGHTGSGKSTLASLLMGYYPL 393 (592)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 45799999999999999999999876544
No 456
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=76.47 E-value=1.8 Score=48.45 Aligned_cols=27 Identities=33% Similarity=0.336 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999988886443
No 457
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.46 E-value=3.1 Score=52.44 Aligned_cols=54 Identities=19% Similarity=0.395 Sum_probs=38.1
Q ss_pred HHhhcCCCC----CCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 225 EAYKSKSIE----SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 225 ~~y~~~~~~----~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
++|+-+... ..||-..-.+++ ...+-.+++|++|+.|.|||++++.+.+.|-+.
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al---~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~ 65 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHAL---EQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCT 65 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHH---HhCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 455544432 467655333333 234567889999999999999999999999763
No 458
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=76.42 E-value=1.7 Score=48.89 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..+.++-.+
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 346889999999999999999886543
No 459
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=76.38 E-value=4 Score=49.52 Aligned_cols=30 Identities=33% Similarity=0.444 Sum_probs=26.2
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
..+..|++.|..|+|||+++..+..+|...
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 347789999999999999999999988864
No 460
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=76.36 E-value=1.1e+02 Score=35.32 Aligned_cols=67 Identities=22% Similarity=0.153 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 001068 958 ASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQK-------MKSMEEVWQKQMRSLQSSLSIA 1024 (1166)
Q Consensus 958 ~~~l~~Lq~r~~k~e~~l~ekeeen~~L~~eL~~~e~r~~E~e~~-------~~~~ee~lqkq~~~LQ~~l~~l 1024 (1166)
..+-..++..+..+..+.++++++...|..++.+..+...++.+. -.+|-...|..+..|+..+.++
T Consensus 140 ~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDL 213 (401)
T PF06785_consen 140 REENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDL 213 (401)
T ss_pred HHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHH
Confidence 334445555556666666677777777766666554443333222 2223344455556666555553
No 461
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=76.36 E-value=1.9 Score=47.61 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|++|||||+..|.+.-.+
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46889999999999999988886544
No 462
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=76.30 E-value=1.9 Score=47.10 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 457899999999999999998886544
No 463
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=76.27 E-value=2.4 Score=44.69 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
+.-.||+|++|+|||+.+..|+-.|.
T Consensus 19 ~g~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 46789999999999999977755553
No 464
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=76.23 E-value=1.9 Score=48.50 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|++|||||+..|.+.-.+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (261)
T PRK14263 33 KNEITGFIGPSGCGKSTVLRSLNRMN 58 (261)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccc
Confidence 46899999999999999999885443
No 465
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=76.22 E-value=3.4 Score=51.81 Aligned_cols=55 Identities=24% Similarity=0.414 Sum_probs=39.1
Q ss_pred HHHhhcCCCC----CCchhHHHHHHHHHHH-HcCceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 224 IEAYKSKSIE----SPHVYAITDTAIREMI-RDEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 224 ~~~y~~~~~~----~PHiyavA~~Ay~~m~-~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
.+.|+-+... .+|+-. .+..++ ..+.++++|++|+.|.|||+.++.+-+.|.+..
T Consensus 7 ~~KyRP~~F~dIIGQe~iv~----~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~ 66 (605)
T PRK05896 7 YRKYRPHNFKQIIGQELIKK----ILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN 66 (605)
T ss_pred HHHhCCCCHHHhcCcHHHHH----HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 3556544432 466643 444444 346689999999999999999999999987643
No 466
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=76.21 E-value=1.9 Score=48.22 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|+||||||+..+.++-.+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 30 AGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46788999999999999999886543
No 467
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=76.21 E-value=2 Score=47.14 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|++|||||+..+.+...+
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999887544
No 468
>PLN02200 adenylate kinase family protein
Probab=76.20 E-value=2.4 Score=47.06 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.+--|+|.|.+|||||+.++.+.+.+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999998765
No 469
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=76.18 E-value=4 Score=42.67 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=27.0
Q ss_pred HHcCceEEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 001068 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1166)
Q Consensus 249 ~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1166)
..++-+|++|+.|++|+||++.++.+.+.|.....
T Consensus 14 ~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~ 48 (162)
T PF13177_consen 14 KSGRLPHALLFHGPSGSGKKTLALAFARALLCSNP 48 (162)
T ss_dssp HCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-
T ss_pred HcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence 34567999999999999999999999998876543
No 470
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=76.17 E-value=1.9 Score=49.58 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|++|||||+..|+++-.+
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356788999999999999999987544
No 471
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=76.13 E-value=1.5 Score=56.67 Aligned_cols=28 Identities=36% Similarity=0.584 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
..|.|.|.|+||||||+..|.++..+.-
T Consensus 499 ~G~~vaIvG~SGsGKSTLlklL~gl~~p 526 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAKLLVGFFQA 526 (708)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 4588999999999999999999876543
No 472
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=76.12 E-value=1.9 Score=47.91 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~ 276 (1166)
..+.+.|.|+||||||+..+.+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 30 PNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 468899999999999999888864
No 473
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=76.07 E-value=2 Score=46.23 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
...+.+.|.|+||||||+..+.+.-.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999988887543
No 474
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=76.05 E-value=3.1 Score=50.05 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yL 278 (1166)
-+|+|.|++|+|||+.++.+-+.|
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhc
Confidence 689999999999999999886544
No 475
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=76.04 E-value=1.8 Score=45.56 Aligned_cols=19 Identities=42% Similarity=0.669 Sum_probs=17.9
Q ss_pred EEEcCCCCCChhHHHHHHH
Q 001068 257 IIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il 275 (1166)
|+|+|-.|.|||+.|+.+-
T Consensus 3 I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred EEEeCCCCCchHHHHHHHH
Confidence 8999999999999999885
No 476
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=76.04 E-value=3.3 Score=48.30 Aligned_cols=40 Identities=25% Similarity=0.343 Sum_probs=32.7
Q ss_pred HHHHHHH--HcCceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 243 TAIREMI--RDEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 243 ~Ay~~m~--~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
.+|+.+. ..+-+++++++|++|.|||+.++.+-+.|.+..
T Consensus 8 ~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~ 49 (325)
T PRK08699 8 EQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCET 49 (325)
T ss_pred HHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 4555555 457899999999999999999999998887643
No 477
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=76.02 E-value=2 Score=45.16 Aligned_cols=21 Identities=24% Similarity=0.563 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCCChhHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIA 274 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~i 274 (1166)
--|+++.|.|||||++..|.+
T Consensus 37 GECvvL~G~SG~GKStllr~L 57 (235)
T COG4778 37 GECVVLHGPSGSGKSTLLRSL 57 (235)
T ss_pred ccEEEeeCCCCCcHHHHHHHH
Confidence 479999999999999987776
No 478
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=76.02 E-value=1.8 Score=46.73 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=19.7
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1166)
.+.|.|+||||||+..+.+.-.+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999998886443
No 479
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=76.01 E-value=1.9 Score=48.42 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|.+|||||+..+.|.-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 27 PGEVVAILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46889999999999999988886543
No 480
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=76.00 E-value=5.8 Score=42.28 Aligned_cols=43 Identities=21% Similarity=0.289 Sum_probs=30.7
Q ss_pred chhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHH-HHHHHHHHhc
Q 001068 236 HVYAITDTAIREMIRDEVNQSIIISGESGAGKTETA-KIAMQYLAAL 281 (1166)
Q Consensus 236 HiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~-K~il~yLa~~ 281 (1166)
.++..=..|+..+.. ++.+++.+++|+|||.+. -.+++.+...
T Consensus 21 ~~~~~Q~~~~~~~~~---~~~~li~~~TG~GKT~~~~~~~l~~~~~~ 64 (203)
T cd00268 21 KPTPIQARAIPPLLS---GRDVIGQAQTGSGKTAAFLIPILEKLDPS 64 (203)
T ss_pred CCCHHHHHHHHHHhc---CCcEEEECCCCCcHHHHHHHHHHHHHHhh
Confidence 344555667877776 577999999999999884 3445555554
No 481
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=75.99 E-value=2 Score=48.49 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 44 EKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 357899999999999999988886543
No 482
>PRK09183 transposase/IS protein; Provisional
Probab=75.97 E-value=2.4 Score=47.91 Aligned_cols=27 Identities=33% Similarity=0.363 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.+.|+|.|++|+|||+.+..+...++.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 467999999999999999988665554
No 483
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=75.97 E-value=1.9 Score=48.74 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|+||||||+..|.+.-.+
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999998886543
No 484
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.94 E-value=2.1 Score=44.06 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCCChhHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il 275 (1166)
..+.+.|.|++|||||+..+.+.
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~ 46 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIA 46 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45889999999999999888774
No 485
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=75.91 E-value=1.9 Score=48.63 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|++|||||+..|.|.-.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 32 RGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4688999999999999988887644
No 486
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=75.91 E-value=2.7 Score=47.65 Aligned_cols=36 Identities=31% Similarity=0.553 Sum_probs=27.9
Q ss_pred HHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 001068 247 EMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1166)
Q Consensus 247 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1166)
.+++. .++.++|.|-.|||||++.-+-+-||...++
T Consensus 7 ~~i~~-~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~ 42 (315)
T PF00580_consen 7 RIIRS-TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG 42 (315)
T ss_dssp HHHHS--SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS
T ss_pred HHHhC-CCCCEEEEeCCCCCchHHHHHHHHHhhcccc
Confidence 34555 7899999999999999999888888887654
No 487
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=75.89 E-value=2.7 Score=43.33 Aligned_cols=30 Identities=30% Similarity=0.378 Sum_probs=22.9
Q ss_pred HHHHHcCceEEEEEcCCCCCChhHHHHHHH
Q 001068 246 REMIRDEVNQSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 246 ~~m~~~~~~QsIiisGESGaGKTe~~K~il 275 (1166)
+.+....+.-.|+|.|.+|||||+..+.+.
T Consensus 6 ~~~~~~~~~~~v~i~G~~g~GKStLl~~l~ 35 (173)
T cd04155 6 RKLRKSSEEPRILILGLDNAGKTTILKQLA 35 (173)
T ss_pred HHhhccCCccEEEEEccCCCCHHHHHHHHh
Confidence 344445556779999999999999877664
No 488
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=75.87 E-value=2.4 Score=50.34 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
+...|++.|.+|+|||+++..+..+++.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~ 163 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVM 163 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999998876653
No 489
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=75.86 E-value=1.9 Score=50.82 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~ 276 (1166)
..+.+.|.|+||||||+..|.|.-
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~iaG 46 (352)
T PRK11144 23 AQGITAIFGRSGAGKTSLINAISG 46 (352)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999888753
No 490
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=75.85 E-value=1.7 Score=46.85 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
...+.+.|.|++|||||+..+.+.-.+.
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3578999999999999999998876543
No 491
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=75.77 E-value=2 Score=48.14 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|+||||||+..+.|.-.
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 37 KNSVTALIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4688999999999999999888643
No 492
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.76 E-value=3.1 Score=52.31 Aligned_cols=44 Identities=27% Similarity=0.463 Sum_probs=33.7
Q ss_pred CCchhHHHHHHHHHHHH-cCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 234 SPHVYAITDTAIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 234 ~PHiyavA~~Ay~~m~~-~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
..||-.. .+.++. .+-++++|++|..|.|||++++.+.+.|-+.
T Consensus 18 q~~i~~~----L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 18 QEHVTEP----LSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred cHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 4676555 334333 4567889999999999999999999887764
No 493
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=75.73 E-value=1.8 Score=50.59 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=24.3
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCe
Q 001068 400 FRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNV 433 (1166)
Q Consensus 400 f~~~~~Al~~lg~s~~e~~~i~~iLaAILhLGni 433 (1166)
|+.+-=.|+.-|++.++++.-.+-+|.+|+|.++
T Consensus 93 ~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~l 126 (338)
T COG3839 93 YENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHL 126 (338)
T ss_pred HHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhH
Confidence 5556667777788888877777777777776663
No 494
>PRK13975 thymidylate kinase; Provisional
Probab=75.72 E-value=2.2 Score=45.37 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.-|+|.|..|||||+.++.+-+.|
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999987776
No 495
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=75.71 E-value=1.3 Score=46.57 Aligned_cols=26 Identities=38% Similarity=0.434 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
+-.=|.||||||||+..+.+-..|+-
T Consensus 33 eVLgiVGESGSGKtTLL~~is~rl~p 58 (258)
T COG4107 33 EVLGIVGESGSGKTTLLKCISGRLTP 58 (258)
T ss_pred cEEEEEecCCCcHHhHHHHHhcccCC
Confidence 56678899999999987776555543
No 496
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=75.67 E-value=3.8 Score=49.20 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=24.3
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
..++|+|.+|+|||..++.+..++...
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~ 163 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILEN 163 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 469999999999999999999988764
No 497
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=75.62 E-value=1.8 Score=46.61 Aligned_cols=50 Identities=28% Similarity=0.416 Sum_probs=31.4
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHHhccCCCCchhhhhhh-----hHHHHhhcCc
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKT-----NPILEAFGNA 304 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~~~~~~~ie~~il~s-----npiLEAFGNA 304 (1166)
.-|.|+|-+|||||+.++++-++=..+=....+..+++.. .-|.+.||..
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~ 57 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAELGAPVIDADAIAHEVVEPGGPALQAIVEAFGPE 57 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHHcCCEEEEecHHHHHHhhccHHHHHHHHHHhCHH
Confidence 4699999999999999998877311110111344444431 3467788864
No 498
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=75.61 E-value=2 Score=48.69 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|++|||||+..|.+.-.
T Consensus 45 ~Ge~~~IiG~nGsGKSTLl~~l~Gl 69 (274)
T PRK14265 45 AKKIIAFIGPSGCGKSTLLRCFNRM 69 (274)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4688999999999999998888644
No 499
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=75.61 E-value=2 Score=50.04 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
...+.+.|.|+||||||+..+++.-.+.
T Consensus 50 ~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~ 77 (320)
T PRK13631 50 EKNKIYFIIGNSGSGKSTLVTHFNGLIK 77 (320)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4578999999999999999998875543
No 500
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=75.58 E-value=3.8 Score=49.27 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+..|++.|.+|+|||+.++.+-+.+
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 5899999999999999999986664
Done!