Query 001068
Match_columns 1166
No_of_seqs 416 out of 2601
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 09:25:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001068.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001068hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dfs_A Myosin-5A; myosin-V, in 100.0 2E-215 6E-220 2051.0 77.6 823 117-941 8-864 (1080)
2 1kk8_A Myosin heavy chain, str 100.0 2E-207 7E-212 1920.7 76.7 783 97-911 11-823 (837)
3 1i84_S Smooth muscle myosin he 100.0 2E-203 6E-208 1979.5 82.4 775 113-912 27-837 (1184)
4 1w7j_A Myosin VA; motor protei 100.0 1E-203 3E-208 1879.0 65.5 750 117-889 8-790 (795)
5 4db1_A Myosin-7; S1DC, cardiac 100.0 1E-202 5E-207 1860.0 64.5 754 85-845 2-782 (783)
6 4anj_A Unconventional myosin-V 100.0 1E-203 5E-208 1915.2 55.8 797 118-924 3-854 (1052)
7 2ycu_A Non muscle myosin 2C, a 100.0 2E-198 8E-203 1879.8 74.7 788 113-905 4-824 (995)
8 1g8x_A Myosin II heavy chain f 100.0 8E-197 3E-201 1862.5 81.6 760 113-906 28-808 (1010)
9 1w9i_A Myosin II heavy chain; 100.0 4E-198 1E-202 1814.5 62.7 715 118-848 31-766 (770)
10 2v26_A Myosin VI; calmodulin-b 100.0 6E-197 2E-201 1818.2 64.9 729 121-858 2-784 (784)
11 1lkx_A Myosin IE heavy chain; 100.0 7E-191 2E-195 1742.6 58.5 662 168-844 6-696 (697)
12 2dfs_A Myosin-5A; myosin-V, in 99.7 4.2E-17 1.4E-21 210.8 17.3 188 844-1032 816-1043(1080)
13 2ix7_C Myosin-5A; contractIle 98.7 2.7E-09 9.3E-14 90.5 2.1 45 846-890 7-51 (58)
14 1n2d_C IQ2 and IQ3 motifs from 98.7 1.6E-08 5.5E-13 82.3 6.6 46 866-912 2-47 (48)
15 2ix7_C Myosin-5A; contractIle 98.7 2.1E-08 7.2E-13 85.0 7.0 49 893-941 5-53 (58)
16 1n2d_C IQ2 and IQ3 motifs from 98.4 3.2E-07 1.1E-11 74.6 6.0 42 894-935 4-47 (48)
17 1i84_S Smooth muscle myosin he 98.4 1E-06 3.5E-11 116.4 14.2 139 892-1030 791-938 (1184)
18 2bl0_A Major plasmodial myosin 98.0 9.9E-06 3.4E-10 69.7 7.4 59 866-941 3-61 (63)
19 1wdc_A Scallop myosin; calcium 98.0 1.3E-05 4.5E-10 69.2 7.3 46 865-910 4-49 (64)
20 1kk8_A Myosin heavy chain, str 96.7 0.0018 6.2E-08 81.9 7.6 51 892-942 778-831 (837)
21 1wdc_A Scallop myosin; calcium 96.5 0.0032 1.1E-07 54.1 5.3 47 894-940 7-56 (64)
22 2bl0_A Major plasmodial myosin 96.4 0.0027 9.2E-08 54.4 4.3 48 894-941 5-55 (63)
23 3gn4_A Myosin-VI; unconvention 95.5 0.057 1.9E-06 53.7 9.7 31 888-918 40-70 (148)
24 1jbk_A CLPB protein; beta barr 94.8 0.011 3.7E-07 59.8 2.6 33 248-280 37-69 (195)
25 3gn4_A Myosin-VI; unconvention 94.8 0.49 1.7E-05 47.0 14.0 54 875-937 13-66 (148)
26 2p65_A Hypothetical protein PF 94.4 0.037 1.3E-06 55.7 5.5 33 248-280 37-69 (187)
27 4eun_A Thermoresistant glucoki 93.9 0.028 9.7E-07 58.6 3.4 33 246-278 21-53 (200)
28 3uie_A Adenylyl-sulfate kinase 93.7 0.048 1.7E-06 56.8 4.8 31 249-279 20-50 (200)
29 1ex7_A Guanylate kinase; subst 93.5 0.033 1.1E-06 58.1 2.9 22 257-278 4-25 (186)
30 3c8u_A Fructokinase; YP_612366 93.3 0.037 1.2E-06 58.1 3.0 30 251-280 19-48 (208)
31 1kgd_A CASK, peripheral plasma 92.8 0.044 1.5E-06 56.2 2.7 26 254-279 5-30 (180)
32 3a00_A Guanylate kinase, GMP k 92.5 0.043 1.5E-06 56.6 2.1 25 255-279 2-26 (186)
33 1lvg_A Guanylate kinase, GMP k 92.5 0.053 1.8E-06 56.7 2.8 26 254-279 4-29 (198)
34 3bos_A Putative DNA replicatio 92.4 0.11 3.9E-06 54.5 5.4 38 244-281 42-79 (242)
35 3ec2_A DNA replication protein 92.4 0.072 2.4E-06 54.3 3.7 28 253-280 37-64 (180)
36 1qhx_A CPT, protein (chloramph 92.3 0.057 1.9E-06 54.6 2.7 25 254-278 3-27 (178)
37 1zp6_A Hypothetical protein AT 92.3 0.062 2.1E-06 55.0 3.0 29 248-276 3-31 (191)
38 2w58_A DNAI, primosome compone 92.3 0.096 3.3E-06 54.3 4.4 27 255-281 55-81 (202)
39 2eyu_A Twitching motility prot 92.1 0.12 4.2E-06 56.6 5.2 37 244-281 16-52 (261)
40 3asz_A Uridine kinase; cytidin 91.8 0.087 3E-06 55.0 3.5 29 251-279 3-31 (211)
41 3tr0_A Guanylate kinase, GMP k 91.6 0.078 2.7E-06 54.8 2.9 26 253-278 6-31 (205)
42 3tau_A Guanylate kinase, GMP k 91.6 0.067 2.3E-06 56.2 2.4 27 252-278 6-32 (208)
43 3kb2_A SPBC2 prophage-derived 91.6 0.091 3.1E-06 52.5 3.3 24 256-279 3-26 (173)
44 3t61_A Gluconokinase; PSI-biol 91.5 0.09 3.1E-06 54.6 3.2 24 255-278 19-42 (202)
45 1zuh_A Shikimate kinase; alpha 91.5 0.097 3.3E-06 52.6 3.4 26 254-279 7-32 (168)
46 3vaa_A Shikimate kinase, SK; s 91.2 0.11 3.7E-06 54.1 3.4 25 254-278 25-49 (199)
47 1knq_A Gluconate kinase; ALFA/ 91.2 0.13 4.5E-06 51.9 3.9 26 253-278 7-32 (175)
48 2qor_A Guanylate kinase; phosp 91.2 0.078 2.7E-06 55.3 2.3 26 253-278 11-36 (204)
49 1kht_A Adenylate kinase; phosp 91.1 0.11 3.7E-06 52.9 3.2 26 254-279 3-28 (192)
50 1m7g_A Adenylylsulfate kinase; 91.0 0.17 5.9E-06 53.0 4.8 31 249-279 20-50 (211)
51 1znw_A Guanylate kinase, GMP k 90.9 0.098 3.3E-06 54.8 2.8 27 252-278 18-44 (207)
52 2j41_A Guanylate kinase; GMP, 90.9 0.086 2.9E-06 54.5 2.3 26 253-278 5-30 (207)
53 2l53_B CAM, voltage-gated sodi 90.9 0.19 6.7E-06 36.6 3.4 22 892-913 5-26 (31)
54 1rz3_A Hypothetical protein rb 90.8 0.15 5.1E-06 53.2 4.0 32 252-283 20-51 (201)
55 1np6_A Molybdopterin-guanine d 90.8 0.13 4.6E-06 52.8 3.6 28 255-282 7-34 (174)
56 1s96_A Guanylate kinase, GMP k 90.7 0.1 3.5E-06 55.6 2.7 27 253-279 15-41 (219)
57 2pez_A Bifunctional 3'-phospho 90.6 0.15 5.1E-06 51.8 3.8 28 253-280 4-31 (179)
58 2kxw_B Sodium channel protein 90.6 0.15 5.1E-06 36.1 2.5 20 892-911 5-24 (27)
59 3iij_A Coilin-interacting nucl 90.6 0.12 4.2E-06 52.5 3.1 26 253-278 10-35 (180)
60 2kjq_A DNAA-related protein; s 90.5 0.14 4.9E-06 51.0 3.4 28 253-280 35-62 (149)
61 1p9r_A General secretion pathw 90.4 0.2 6.7E-06 58.8 5.0 36 244-280 158-193 (418)
62 1htw_A HI0065; nucleotide-bind 90.4 0.16 5.5E-06 51.3 3.7 27 252-278 31-57 (158)
63 3ney_A 55 kDa erythrocyte memb 90.3 0.14 4.8E-06 53.8 3.3 27 253-279 18-44 (197)
64 2rhm_A Putative kinase; P-loop 90.3 0.15 5.2E-06 52.0 3.6 26 253-278 4-29 (193)
65 1ye8_A Protein THEP1, hypothet 90.3 0.14 4.8E-06 52.7 3.2 23 256-278 2-24 (178)
66 3jvv_A Twitching mobility prot 90.3 0.21 7.1E-06 57.3 5.0 37 244-281 114-150 (356)
67 2chg_A Replication factor C sm 90.3 0.22 7.5E-06 51.2 4.7 37 244-280 28-64 (226)
68 1odf_A YGR205W, hypothetical 3 90.2 0.16 5.6E-06 56.5 3.9 30 251-280 28-57 (290)
69 1nks_A Adenylate kinase; therm 90.2 0.13 4.4E-06 52.3 2.8 25 256-280 3-27 (194)
70 1z6g_A Guanylate kinase; struc 90.0 0.11 3.7E-06 55.1 2.2 26 253-278 22-47 (218)
71 1xjc_A MOBB protein homolog; s 90.0 0.18 6E-06 51.8 3.6 28 255-282 5-32 (169)
72 2f1r_A Molybdopterin-guanine d 90.0 0.079 2.7E-06 54.4 1.0 27 255-281 3-29 (171)
73 2bbw_A Adenylate kinase 4, AK4 89.8 0.17 5.7E-06 54.5 3.4 26 254-279 27-52 (246)
74 3tqf_A HPR(Ser) kinase; transf 89.7 0.16 5.4E-06 52.3 3.0 23 254-276 16-38 (181)
75 1kag_A SKI, shikimate kinase I 89.7 0.15 5E-06 51.3 2.7 24 255-278 5-28 (173)
76 2z0h_A DTMP kinase, thymidylat 89.6 0.19 6.6E-06 51.4 3.7 26 257-282 3-28 (197)
77 1njg_A DNA polymerase III subu 89.6 0.33 1.1E-05 50.4 5.5 30 251-280 42-71 (250)
78 1l8q_A Chromosomal replication 89.6 0.24 8.2E-06 55.4 4.7 45 235-281 18-64 (324)
79 3lw7_A Adenylate kinase relate 89.6 0.14 4.8E-06 50.8 2.5 19 256-274 3-21 (179)
80 1gvn_B Zeta; postsegregational 89.6 0.17 5.8E-06 56.1 3.4 27 252-278 31-57 (287)
81 3trf_A Shikimate kinase, SK; a 89.6 0.19 6.5E-06 51.1 3.5 25 254-278 5-29 (185)
82 2bdt_A BH3686; alpha-beta prot 89.6 0.19 6.4E-06 51.5 3.5 22 255-276 3-24 (189)
83 3e70_C DPA, signal recognition 89.5 0.24 8.2E-06 56.1 4.6 33 251-283 126-158 (328)
84 3cm0_A Adenylate kinase; ATP-b 89.3 0.23 7.9E-06 50.5 3.9 26 253-278 3-28 (186)
85 1gtv_A TMK, thymidylate kinase 89.2 0.09 3.1E-06 54.8 0.8 26 256-281 2-27 (214)
86 3aez_A Pantothenate kinase; tr 89.2 0.24 8.3E-06 55.7 4.3 31 251-281 87-117 (312)
87 2jaq_A Deoxyguanosine kinase; 89.1 0.19 6.6E-06 51.6 3.2 24 256-279 2-25 (205)
88 1e6c_A Shikimate kinase; phosp 89.1 0.2 6.9E-06 50.2 3.3 23 256-278 4-26 (173)
89 1sq5_A Pantothenate kinase; P- 89.1 0.31 1.1E-05 54.5 5.1 28 252-279 78-105 (308)
90 1d2n_A N-ethylmaleimide-sensit 89.1 0.39 1.3E-05 52.2 5.8 28 251-278 61-88 (272)
91 2ewv_A Twitching motility prot 89.1 0.22 7.4E-06 57.5 3.9 31 251-281 133-163 (372)
92 2yvu_A Probable adenylyl-sulfa 89.1 0.29 9.8E-06 50.0 4.4 30 253-282 12-41 (186)
93 1cke_A CK, MSSA, protein (cyti 89.0 0.2 6.9E-06 52.6 3.3 25 254-278 5-29 (227)
94 4gp7_A Metallophosphoesterase; 89.0 0.24 8.2E-06 50.3 3.7 21 253-273 8-28 (171)
95 2pt5_A Shikimate kinase, SK; a 89.0 0.21 7.1E-06 49.9 3.2 23 256-278 2-24 (168)
96 3cr8_A Sulfate adenylyltranfer 88.9 0.37 1.3E-05 58.5 5.9 31 252-282 367-397 (552)
97 2iyv_A Shikimate kinase, SK; t 88.5 0.23 8E-06 50.4 3.3 24 256-279 4-27 (184)
98 3b9q_A Chloroplast SRP recepto 88.4 0.31 1.1E-05 54.5 4.5 31 253-283 99-129 (302)
99 1rj9_A FTSY, signal recognitio 88.3 0.27 9.4E-06 55.0 3.9 31 253-283 101-131 (304)
100 1via_A Shikimate kinase; struc 88.2 0.25 8.4E-06 50.0 3.2 23 256-278 6-28 (175)
101 2vp4_A Deoxynucleoside kinase; 88.2 0.15 5E-06 54.5 1.6 26 252-277 18-43 (230)
102 3lnc_A Guanylate kinase, GMP k 88.2 0.18 6E-06 53.6 2.2 26 253-278 26-52 (231)
103 1qf9_A UMP/CMP kinase, protein 88.2 0.22 7.6E-06 50.5 2.9 25 254-278 6-30 (194)
104 3fb4_A Adenylate kinase; psych 88.1 0.25 8.4E-06 51.7 3.3 22 257-278 3-24 (216)
105 1ly1_A Polynucleotide kinase; 88.1 0.27 9.2E-06 49.4 3.4 22 255-276 3-24 (181)
106 1fnn_A CDC6P, cell division co 88.0 0.43 1.5E-05 54.1 5.5 37 243-279 31-69 (389)
107 2jeo_A Uridine-cytidine kinase 88.0 0.3 1E-05 52.4 3.9 27 252-278 23-49 (245)
108 3te6_A Regulatory protein SIR3 87.9 0.34 1.2E-05 54.7 4.4 38 244-281 35-72 (318)
109 2qby_B CDC6 homolog 3, cell di 87.9 0.4 1.4E-05 54.4 5.1 40 242-281 33-72 (384)
110 3tlx_A Adenylate kinase 2; str 87.8 0.59 2E-05 50.3 6.1 27 252-278 27-53 (243)
111 4anj_A Unconventional myosin-V 87.8 0.27 9.1E-06 63.7 3.9 39 868-910 776-814 (1052)
112 2pbr_A DTMP kinase, thymidylat 87.8 0.27 9.2E-06 50.0 3.2 26 256-281 2-27 (195)
113 3n70_A Transport activator; si 87.8 0.21 7.1E-06 49.2 2.2 25 252-276 22-46 (145)
114 2plr_A DTMP kinase, probable t 87.7 0.27 9.3E-06 50.8 3.2 27 254-280 4-30 (213)
115 1svm_A Large T antigen; AAA+ f 87.6 0.49 1.7E-05 54.7 5.6 45 234-278 148-193 (377)
116 1ofh_A ATP-dependent HSL prote 87.6 0.38 1.3E-05 52.8 4.5 27 252-278 48-74 (310)
117 2bwj_A Adenylate kinase 5; pho 87.6 0.25 8.6E-06 50.6 2.9 26 254-279 12-37 (199)
118 2c95_A Adenylate kinase 1; tra 87.4 0.26 8.9E-06 50.4 2.9 25 254-278 9-33 (196)
119 3ake_A Cytidylate kinase; CMP 87.3 0.3 1E-05 50.4 3.3 23 256-278 4-26 (208)
120 2xk0_A Polycomb protein PCL; t 87.3 3.3 0.00011 35.6 8.8 47 118-164 18-64 (69)
121 2wwf_A Thymidilate kinase, put 87.3 0.27 9.1E-06 51.0 2.9 27 254-280 10-36 (212)
122 4e22_A Cytidylate kinase; P-lo 87.3 0.27 9.2E-06 53.3 3.0 27 253-279 26-52 (252)
123 1tev_A UMP-CMP kinase; ploop, 87.0 0.37 1.3E-05 49.0 3.7 25 254-278 3-27 (196)
124 2v9p_A Replication protein E1; 87.0 0.32 1.1E-05 54.6 3.5 35 244-278 115-150 (305)
125 2qt1_A Nicotinamide riboside k 86.9 0.21 7.3E-06 51.9 1.9 26 253-278 20-45 (207)
126 3a4m_A L-seryl-tRNA(SEC) kinas 86.9 0.34 1.2E-05 52.6 3.6 29 254-282 4-32 (260)
127 3dl0_A Adenylate kinase; phosp 86.9 0.26 9E-06 51.5 2.6 22 257-278 3-24 (216)
128 2w0m_A SSO2452; RECA, SSPF, un 86.9 0.38 1.3E-05 50.2 3.8 30 253-282 22-51 (235)
129 2og2_A Putative signal recogni 86.9 0.43 1.5E-05 54.8 4.5 47 236-282 128-185 (359)
130 2gza_A Type IV secretion syste 86.8 0.15 5.1E-06 58.5 0.7 27 254-280 175-201 (361)
131 1uf9_A TT1252 protein; P-loop, 86.8 0.33 1.1E-05 49.9 3.2 26 252-277 6-31 (203)
132 2cdn_A Adenylate kinase; phosp 86.7 0.38 1.3E-05 49.7 3.7 28 251-278 17-44 (201)
133 1zd8_A GTP:AMP phosphotransfer 86.7 0.25 8.6E-06 52.3 2.3 26 253-278 6-31 (227)
134 1lv7_A FTSH; alpha/beta domain 86.6 0.37 1.2E-05 51.9 3.6 26 253-278 44-69 (257)
135 2vli_A Antibiotic resistance p 86.6 0.23 7.9E-06 50.2 1.9 25 254-278 5-29 (183)
136 3bas_A Myosin heavy chain, str 86.6 7.4 0.00025 35.4 11.7 79 947-1029 9-87 (89)
137 1zak_A Adenylate kinase; ATP:A 86.5 0.31 1.1E-05 51.3 2.9 25 255-279 6-30 (222)
138 1a7j_A Phosphoribulokinase; tr 86.4 0.26 8.9E-06 54.8 2.3 26 254-279 5-30 (290)
139 2i3b_A HCR-ntpase, human cance 86.4 0.34 1.1E-05 50.4 3.0 25 255-279 2-26 (189)
140 3tif_A Uncharacterized ABC tra 86.3 0.28 9.6E-06 52.8 2.5 24 253-276 30-53 (235)
141 1vma_A Cell division protein F 86.3 0.48 1.7E-05 53.1 4.4 30 253-282 103-132 (306)
142 4a74_A DNA repair and recombin 86.2 0.33 1.1E-05 50.8 2.9 27 253-279 24-50 (231)
143 2p5t_B PEZT; postsegregational 86.2 0.3 1E-05 52.9 2.6 27 252-278 30-56 (253)
144 2qz4_A Paraplegin; AAA+, SPG7, 86.2 0.4 1.4E-05 51.4 3.6 27 252-278 37-63 (262)
145 2z4s_A Chromosomal replication 86.2 0.54 1.8E-05 55.3 5.0 40 242-281 117-157 (440)
146 1nn5_A Similar to deoxythymidy 86.1 0.38 1.3E-05 49.9 3.3 29 253-281 8-36 (215)
147 2ehv_A Hypothetical protein PH 86.1 0.44 1.5E-05 50.6 3.8 27 253-279 29-55 (251)
148 2yhs_A FTSY, cell division pro 86.1 0.48 1.6E-05 56.5 4.5 49 235-283 265-322 (503)
149 2fxo_A Myosin heavy chain, car 85.8 8.3 0.00028 37.5 12.4 74 962-1035 51-127 (129)
150 3nwj_A ATSK2; P loop, shikimat 85.7 0.34 1.2E-05 52.8 2.7 25 254-278 48-72 (250)
151 2oap_1 GSPE-2, type II secreti 85.7 0.33 1.1E-05 58.4 2.9 29 249-279 257-285 (511)
152 2v54_A DTMP kinase, thymidylat 85.7 0.28 9.7E-06 50.5 2.0 25 254-278 4-28 (204)
153 1y63_A LMAJ004144AAA protein; 85.6 0.41 1.4E-05 49.0 3.2 24 254-277 10-33 (184)
154 3syl_A Protein CBBX; photosynt 85.6 0.7 2.4E-05 50.9 5.3 31 251-281 64-94 (309)
155 1ukz_A Uridylate kinase; trans 85.6 0.42 1.4E-05 49.3 3.3 26 253-278 14-39 (203)
156 1sxj_C Activator 1 40 kDa subu 85.3 0.61 2.1E-05 52.5 4.7 37 244-280 36-72 (340)
157 4edh_A DTMP kinase, thymidylat 85.3 0.47 1.6E-05 50.3 3.5 29 254-282 6-34 (213)
158 2ze6_A Isopentenyl transferase 85.3 0.42 1.4E-05 51.8 3.2 23 256-278 3-25 (253)
159 1iqp_A RFCS; clamp loader, ext 85.2 0.71 2.4E-05 50.9 5.1 35 245-279 37-71 (327)
160 1hqc_A RUVB; extended AAA-ATPa 85.1 0.93 3.2E-05 50.2 6.1 27 252-278 36-62 (324)
161 4fcw_A Chaperone protein CLPB; 85.1 0.52 1.8E-05 52.0 3.9 27 254-280 47-73 (311)
162 3pvs_A Replication-associated 85.1 0.51 1.8E-05 55.7 4.1 85 243-334 39-123 (447)
163 3uk6_A RUVB-like 2; hexameric 85.1 0.67 2.3E-05 52.4 4.9 25 255-279 71-95 (368)
164 2qby_A CDC6 homolog 1, cell di 85.1 0.31 1.1E-05 55.0 2.1 34 248-281 39-72 (386)
165 1zu4_A FTSY; GTPase, signal re 85.0 0.61 2.1E-05 52.6 4.5 31 253-283 104-134 (320)
166 2gks_A Bifunctional SAT/APS ki 84.9 0.78 2.7E-05 55.6 5.6 49 232-280 346-398 (546)
167 2v1u_A Cell division control p 84.9 0.34 1.2E-05 54.8 2.3 30 251-280 41-70 (387)
168 1e4v_A Adenylate kinase; trans 84.7 0.43 1.5E-05 50.0 2.9 22 257-278 3-24 (214)
169 1nij_A Hypothetical protein YJ 84.7 0.41 1.4E-05 53.8 2.9 24 254-277 4-27 (318)
170 1ixz_A ATP-dependent metallopr 84.6 0.41 1.4E-05 51.4 2.7 25 254-278 49-73 (254)
171 3r20_A Cytidylate kinase; stru 84.6 0.48 1.7E-05 51.0 3.2 26 254-279 9-34 (233)
172 1vht_A Dephospho-COA kinase; s 84.5 0.4 1.4E-05 50.2 2.5 23 254-276 4-26 (218)
173 1jjv_A Dephospho-COA kinase; P 84.4 0.41 1.4E-05 49.6 2.5 21 256-276 4-24 (206)
174 2if2_A Dephospho-COA kinase; a 84.2 0.38 1.3E-05 49.7 2.2 21 256-276 3-23 (204)
175 3b9p_A CG5977-PA, isoform A; A 84.1 0.47 1.6E-05 52.1 3.0 26 253-278 53-78 (297)
176 2xb4_A Adenylate kinase; ATP-b 84.1 0.52 1.8E-05 49.9 3.2 23 256-278 2-24 (223)
177 1sxj_E Activator 1 40 kDa subu 84.0 0.43 1.5E-05 53.8 2.7 37 244-280 25-62 (354)
178 1m8p_A Sulfate adenylyltransfe 84.0 0.85 2.9E-05 55.6 5.4 31 251-281 393-423 (573)
179 1g8f_A Sulfate adenylyltransfe 83.9 0.46 1.6E-05 57.0 3.0 45 234-280 377-421 (511)
180 2bjv_A PSP operon transcriptio 83.8 0.6 2.1E-05 50.4 3.7 26 253-278 28-53 (265)
181 4tmk_A Protein (thymidylate ki 83.6 0.56 1.9E-05 49.7 3.2 28 255-282 4-31 (213)
182 1mv5_A LMRA, multidrug resista 83.6 0.49 1.7E-05 51.1 2.8 28 252-279 26-53 (243)
183 3co5_A Putative two-component 83.5 0.23 8E-06 48.8 0.2 23 253-275 26-48 (143)
184 1sxj_D Activator 1 41 kDa subu 83.5 0.64 2.2E-05 52.1 3.9 37 244-280 48-84 (353)
185 2cbz_A Multidrug resistance-as 83.5 0.45 1.6E-05 51.2 2.5 26 253-278 30-55 (237)
186 2chq_A Replication factor C sm 83.4 0.58 2E-05 51.5 3.4 35 245-279 29-63 (319)
187 2ff7_A Alpha-hemolysin translo 83.4 0.44 1.5E-05 51.7 2.3 25 253-277 34-58 (247)
188 1aky_A Adenylate kinase; ATP:A 83.4 0.63 2.1E-05 48.9 3.5 25 254-278 4-28 (220)
189 4eaq_A DTMP kinase, thymidylat 83.3 0.72 2.5E-05 49.3 3.9 28 253-280 25-52 (229)
190 3lv8_A DTMP kinase, thymidylat 83.3 0.59 2E-05 50.4 3.2 29 254-282 27-55 (236)
191 3tqc_A Pantothenate kinase; bi 83.3 0.71 2.4E-05 52.1 4.0 27 254-280 92-118 (321)
192 2ghi_A Transport protein; mult 83.3 0.46 1.6E-05 51.9 2.5 27 252-278 44-70 (260)
193 3b85_A Phosphate starvation-in 83.2 0.73 2.5E-05 48.6 3.9 31 244-277 15-45 (208)
194 2onk_A Molybdate/tungstate ABC 83.2 0.54 1.9E-05 50.7 2.9 24 255-278 25-48 (240)
195 1jr3_A DNA polymerase III subu 83.2 1.1 3.6E-05 50.7 5.5 30 251-280 35-64 (373)
196 1r6b_X CLPA protein; AAA+, N-t 83.1 1.2 4.3E-05 55.8 6.6 66 214-280 167-233 (758)
197 1uj2_A Uridine-cytidine kinase 83.0 0.62 2.1E-05 50.2 3.3 27 253-279 21-47 (252)
198 1in4_A RUVB, holliday junction 82.9 1 3.6E-05 50.7 5.3 27 252-278 49-75 (334)
199 3llm_A ATP-dependent RNA helic 82.9 0.94 3.2E-05 48.2 4.7 41 237-280 62-103 (235)
200 3h4m_A Proteasome-activating n 82.9 0.57 2E-05 51.0 3.0 27 252-278 49-75 (285)
201 2d2e_A SUFC protein; ABC-ATPas 82.8 0.55 1.9E-05 50.9 2.8 25 253-277 28-52 (250)
202 2v4h_A NF-kappa-B essential mo 82.5 14 0.00048 34.7 11.6 69 961-1029 26-107 (110)
203 1ko7_A HPR kinase/phosphatase; 82.5 0.6 2E-05 52.5 3.0 24 254-277 144-167 (314)
204 2zu0_C Probable ATP-dependent 82.5 0.6 2E-05 51.2 3.0 25 253-277 45-69 (267)
205 2ixe_A Antigen peptide transpo 82.5 0.52 1.8E-05 51.8 2.5 26 253-278 44-69 (271)
206 3cf0_A Transitional endoplasmi 82.4 0.6 2.1E-05 51.8 3.0 27 252-278 47-73 (301)
207 1iy2_A ATP-dependent metallopr 82.4 0.59 2E-05 51.1 2.9 25 254-278 73-97 (278)
208 1b0u_A Histidine permease; ABC 82.4 0.52 1.8E-05 51.5 2.4 25 253-277 31-55 (262)
209 3pxg_A Negative regulator of g 82.3 1.4 4.9E-05 52.1 6.4 62 218-280 165-227 (468)
210 1knx_A Probable HPR(Ser) kinas 82.3 0.53 1.8E-05 52.9 2.5 23 254-276 147-169 (312)
211 3gfo_A Cobalt import ATP-bindi 82.3 0.49 1.7E-05 52.2 2.2 25 253-277 33-57 (275)
212 3v9p_A DTMP kinase, thymidylat 82.3 0.59 2E-05 50.1 2.7 29 253-281 24-52 (227)
213 4g1u_C Hemin import ATP-bindin 82.2 0.51 1.7E-05 51.8 2.3 26 253-278 36-61 (266)
214 2olj_A Amino acid ABC transpor 82.1 0.55 1.9E-05 51.5 2.4 25 253-277 49-73 (263)
215 2pcj_A ABC transporter, lipopr 82.0 0.53 1.8E-05 50.2 2.2 23 253-275 29-51 (224)
216 2pt7_A CAG-ALFA; ATPase, prote 81.8 0.28 9.7E-06 55.5 0.0 27 254-280 171-197 (330)
217 3hnw_A Uncharacterized protein 81.7 9 0.00031 37.7 10.8 67 958-1028 67-133 (138)
218 2dr3_A UPF0273 protein PH0284; 81.7 0.89 3E-05 48.0 3.9 30 253-282 22-51 (247)
219 3sop_A Neuronal-specific septi 81.6 0.63 2.2E-05 51.1 2.8 27 256-282 4-30 (270)
220 1sxj_B Activator 1 37 kDa subu 81.5 1.1 3.8E-05 49.2 4.8 35 245-279 33-67 (323)
221 3ld9_A DTMP kinase, thymidylat 81.4 1 3.5E-05 48.1 4.2 30 251-280 18-47 (223)
222 1g6h_A High-affinity branched- 81.4 0.58 2E-05 51.0 2.3 25 253-277 32-56 (257)
223 1sgw_A Putative ABC transporte 81.3 0.5 1.7E-05 50.2 1.7 25 253-277 34-58 (214)
224 2r62_A Cell division protease 81.2 0.48 1.6E-05 51.2 1.6 26 253-278 43-68 (268)
225 2pze_A Cystic fibrosis transme 81.2 0.59 2E-05 49.9 2.3 26 253-278 33-58 (229)
226 3pfi_A Holliday junction ATP-d 81.2 1 3.4E-05 50.4 4.3 28 251-278 52-79 (338)
227 2yz2_A Putative ABC transporte 81.1 0.62 2.1E-05 51.0 2.5 24 253-276 32-55 (266)
228 3foz_A TRNA delta(2)-isopenten 81.1 0.79 2.7E-05 51.5 3.3 31 248-278 4-34 (316)
229 2px0_A Flagellar biosynthesis 81.1 0.77 2.6E-05 51.1 3.2 29 252-280 103-131 (296)
230 1cr0_A DNA primase/helicase; R 81.0 0.88 3E-05 50.1 3.7 29 252-280 33-61 (296)
231 1vpl_A ABC transporter, ATP-bi 81.0 0.63 2.1E-05 50.8 2.4 24 253-276 40-63 (256)
232 4ag6_A VIRB4 ATPase, type IV s 80.8 0.79 2.7E-05 52.8 3.3 30 253-282 34-63 (392)
233 1um8_A ATP-dependent CLP prote 80.7 0.87 3E-05 52.0 3.6 26 253-278 71-96 (376)
234 2qmh_A HPR kinase/phosphorylas 80.6 0.75 2.6E-05 48.4 2.7 26 254-279 34-59 (205)
235 3be4_A Adenylate kinase; malar 80.6 0.76 2.6E-05 48.3 2.9 24 255-278 6-29 (217)
236 2grj_A Dephospho-COA kinase; T 80.6 0.87 3E-05 47.4 3.3 27 252-278 10-36 (192)
237 2cvh_A DNA repair and recombin 80.5 0.78 2.7E-05 47.6 2.8 25 252-276 18-42 (220)
238 3rlf_A Maltose/maltodextrin im 80.4 0.75 2.6E-05 53.1 3.0 26 253-278 28-53 (381)
239 1ak2_A Adenylate kinase isoenz 80.4 0.86 3E-05 48.4 3.2 26 254-279 16-41 (233)
240 3kl4_A SRP54, signal recogniti 80.4 1.7 5.9E-05 51.0 6.1 31 253-283 96-126 (433)
241 1ji0_A ABC transporter; ATP bi 80.4 0.66 2.3E-05 50.0 2.3 25 253-277 31-55 (240)
242 2ga8_A Hypothetical 39.9 kDa p 80.3 1.7 5.8E-05 49.7 5.8 41 239-279 6-49 (359)
243 1w5s_A Origin recognition comp 80.2 1.4 4.9E-05 50.2 5.3 35 246-280 40-78 (412)
244 1ls1_A Signal recognition part 80.2 1.2 4E-05 49.6 4.3 31 253-283 97-127 (295)
245 3vkg_A Dynein heavy chain, cyt 80.2 10 0.00035 54.7 14.4 74 958-1031 1933-2006(3245)
246 2fxo_A Myosin heavy chain, car 80.1 14 0.00047 35.9 11.4 52 952-1003 13-71 (129)
247 1g8p_A Magnesium-chelatase 38 80.0 0.76 2.6E-05 51.5 2.8 27 253-279 44-70 (350)
248 3na7_A HP0958; flagellar bioge 79.8 12 0.00041 40.6 12.1 31 1112-1142 132-162 (256)
249 3nh6_A ATP-binding cassette SU 79.8 0.35 1.2E-05 54.3 -0.2 28 252-279 78-105 (306)
250 1a5t_A Delta prime, HOLB; zinc 79.7 1.7 5.8E-05 48.9 5.5 32 250-281 20-51 (334)
251 2qgz_A Helicase loader, putati 79.6 1.6 5.6E-05 48.7 5.3 29 254-282 152-181 (308)
252 3hws_A ATP-dependent CLP prote 79.6 1 3.4E-05 51.3 3.6 26 253-278 50-75 (363)
253 2nq2_C Hypothetical ABC transp 79.5 0.72 2.5E-05 50.1 2.3 26 253-278 30-55 (253)
254 3tmk_A Thymidylate kinase; pho 79.4 0.88 3E-05 48.4 2.9 26 254-279 5-30 (216)
255 2qi9_C Vitamin B12 import ATP- 79.4 0.73 2.5E-05 50.0 2.3 25 253-277 25-49 (249)
256 2ihy_A ABC transporter, ATP-bi 79.3 0.73 2.5E-05 50.9 2.3 25 253-277 46-70 (279)
257 1q3t_A Cytidylate kinase; nucl 79.1 1.2 3.9E-05 47.5 3.7 27 252-278 14-40 (236)
258 3d3q_A TRNA delta(2)-isopenten 78.8 0.87 3E-05 51.8 2.7 25 255-279 8-32 (340)
259 3u61_B DNA polymerase accessor 78.8 2.2 7.5E-05 47.3 6.1 52 223-278 16-72 (324)
260 1ojl_A Transcriptional regulat 78.8 0.83 2.8E-05 50.9 2.5 27 252-278 23-49 (304)
261 1n0w_A DNA repair protein RAD5 78.7 0.9 3.1E-05 47.9 2.7 25 253-277 23-47 (243)
262 1ltq_A Polynucleotide kinase; 78.5 1.1 3.7E-05 49.3 3.4 23 255-277 3-25 (301)
263 1lw7_A Transcriptional regulat 78.2 0.88 3E-05 52.0 2.6 27 254-280 170-196 (365)
264 2pjz_A Hypothetical protein ST 78.1 0.82 2.8E-05 50.1 2.2 24 254-277 30-53 (263)
265 3fvq_A Fe(3+) IONS import ATP- 78.1 0.9 3.1E-05 52.1 2.6 26 253-278 29-54 (359)
266 3a7p_A Autophagy protein 16; c 78.0 29 0.00098 34.5 12.8 68 953-1020 69-136 (152)
267 2ocp_A DGK, deoxyguanosine kin 77.9 0.97 3.3E-05 48.2 2.7 26 254-279 2-27 (241)
268 2h92_A Cytidylate kinase; ross 77.8 1 3.4E-05 47.0 2.7 25 254-278 3-27 (219)
269 3dm5_A SRP54, signal recogniti 77.8 2.1 7.2E-05 50.4 5.7 30 253-282 99-128 (443)
270 3tui_C Methionine import ATP-b 77.8 1 3.5E-05 51.7 3.0 24 253-276 53-76 (366)
271 2yyz_A Sugar ABC transporter, 77.5 1.1 3.6E-05 51.5 3.0 25 253-277 28-52 (359)
272 3kta_A Chromosome segregation 77.4 1 3.5E-05 45.5 2.6 24 255-278 27-50 (182)
273 3eie_A Vacuolar protein sortin 77.4 1.2 4.1E-05 49.8 3.4 26 253-278 50-75 (322)
274 3t15_A Ribulose bisphosphate c 77.3 1.1 3.9E-05 49.5 3.1 27 252-278 34-60 (293)
275 2bbs_A Cystic fibrosis transme 77.2 0.87 3E-05 50.6 2.1 26 253-278 63-88 (290)
276 3d8b_A Fidgetin-like protein 1 77.2 1.1 3.7E-05 51.1 3.0 27 252-278 115-141 (357)
277 3na7_A HP0958; flagellar bioge 76.9 19 0.00066 38.9 12.7 77 950-1026 88-164 (256)
278 3pxi_A Negative regulator of g 76.9 2.5 8.5E-05 53.1 6.4 32 249-280 196-227 (758)
279 3sr0_A Adenylate kinase; phosp 76.8 1.3 4.5E-05 46.6 3.3 23 257-279 3-25 (206)
280 2it1_A 362AA long hypothetical 76.8 1.1 3.9E-05 51.3 3.0 25 253-277 28-52 (362)
281 2x8a_A Nuclear valosin-contain 76.8 1.1 3.8E-05 49.2 2.7 25 254-278 44-68 (274)
282 2ffh_A Protein (FFH); SRP54, s 76.8 1.6 5.4E-05 51.2 4.2 31 253-283 97-127 (425)
283 3o0z_A RHO-associated protein 76.6 13 0.00044 37.7 10.1 18 1112-1129 143-160 (168)
284 2f6r_A COA synthase, bifunctio 76.5 1.3 4.6E-05 48.6 3.4 24 253-276 74-97 (281)
285 3exa_A TRNA delta(2)-isopenten 76.4 0.98 3.3E-05 50.8 2.2 24 255-278 4-27 (322)
286 1z47_A CYSA, putative ABC-tran 76.3 1.2 4E-05 51.1 2.8 25 253-277 40-64 (355)
287 1v43_A Sugar-binding transport 76.1 1.2 4.1E-05 51.3 3.0 26 253-278 36-61 (372)
288 2hf9_A Probable hydrogenase ni 76.1 2.3 7.8E-05 44.3 4.9 34 246-279 30-63 (226)
289 1nlf_A Regulatory protein REPA 75.8 1.3 4.4E-05 48.4 3.0 27 253-279 29-55 (279)
290 3m6a_A ATP-dependent protease 75.7 1.6 5.4E-05 52.8 4.0 29 251-279 105-133 (543)
291 1vec_A ATP-dependent RNA helic 75.6 3.7 0.00013 42.0 6.3 56 212-273 4-59 (206)
292 2qm8_A GTPase/ATPase; G protei 75.6 2 6.8E-05 48.6 4.6 42 242-283 42-84 (337)
293 3pey_A ATP-dependent RNA helic 75.5 3.6 0.00012 46.2 6.7 62 210-275 4-65 (395)
294 1j8m_F SRP54, signal recogniti 75.4 1.9 6.5E-05 48.0 4.2 30 254-283 98-127 (297)
295 2wsm_A Hydrogenase expression/ 75.3 2.1 7.2E-05 44.4 4.3 28 252-279 28-55 (221)
296 1g29_1 MALK, maltose transport 75.3 1.3 4.3E-05 51.1 2.8 25 253-277 28-52 (372)
297 1xwi_A SKD1 protein; VPS4B, AA 75.3 1.3 4.6E-05 49.6 3.0 26 253-278 44-69 (322)
298 3ice_A Transcription terminati 75.0 2.3 7.9E-05 49.2 4.8 47 235-281 155-201 (422)
299 3gd7_A Fusion complex of cysti 75.0 1.2 4.2E-05 51.6 2.6 27 253-279 46-72 (390)
300 3eph_A TRNA isopentenyltransfe 74.9 1.3 4.6E-05 51.4 2.9 23 256-278 4-26 (409)
301 3hjn_A DTMP kinase, thymidylat 74.9 1.8 6.1E-05 45.1 3.6 26 257-282 3-28 (197)
302 3d31_A Sulfate/molybdate ABC t 74.6 0.98 3.4E-05 51.5 1.7 24 253-276 25-48 (348)
303 3zvl_A Bifunctional polynucleo 74.6 1 3.5E-05 52.5 1.9 28 251-278 255-282 (416)
304 3crm_A TRNA delta(2)-isopenten 74.4 1.3 4.4E-05 50.0 2.5 25 254-278 5-29 (323)
305 2l53_B CAM, voltage-gated sodi 74.4 1.8 6.1E-05 31.6 2.3 18 868-885 7-24 (31)
306 2qp9_X Vacuolar protein sortin 74.3 1.4 4.8E-05 50.1 2.9 25 254-278 84-108 (355)
307 3upu_A ATP-dependent DNA helic 74.2 2.8 9.5E-05 49.4 5.5 29 255-283 46-74 (459)
308 1x6v_B Bifunctional 3'-phospho 74.0 2.4 8.2E-05 52.1 4.9 29 253-281 51-79 (630)
309 1sxj_A Activator 1 95 kDa subu 73.9 1.4 4.9E-05 52.7 3.0 26 253-278 76-101 (516)
310 1tue_A Replication protein E1; 73.6 1.5 5.2E-05 46.3 2.7 36 243-278 46-82 (212)
311 3ch4_B Pmkase, phosphomevalona 73.6 1.6 5.5E-05 45.9 2.9 23 256-278 13-35 (202)
312 2npi_A Protein CLP1; CLP1-PCF1 73.5 1.1 3.6E-05 53.2 1.6 32 252-283 136-167 (460)
313 2yv5_A YJEQ protein; hydrolase 73.4 2 6.8E-05 47.8 3.8 30 246-275 157-186 (302)
314 1w36_D RECD, exodeoxyribonucle 73.3 3.9 0.00013 50.1 6.7 28 254-281 164-191 (608)
315 1w7j_A Myosin VA; motor protei 73.3 2.7 9.1E-05 53.1 5.2 27 893-919 768-794 (795)
316 2obl_A ESCN; ATPase, hydrolase 73.3 1.3 4.6E-05 50.4 2.3 36 243-278 60-95 (347)
317 2gxq_A Heat resistant RNA depe 72.9 3.9 0.00013 41.8 5.6 55 220-279 9-64 (207)
318 3umf_A Adenylate kinase; rossm 72.9 2.3 8E-05 45.1 4.0 27 252-278 27-53 (217)
319 3euj_A Chromosome partition pr 72.8 1.7 5.9E-05 51.7 3.2 29 255-283 30-58 (483)
320 2kxw_B Sodium channel protein 72.7 1.5 5.3E-05 31.0 1.6 17 868-884 7-23 (27)
321 2xau_A PRE-mRNA-splicing facto 72.4 3.5 0.00012 52.0 6.1 59 210-274 71-129 (773)
322 3ber_A Probable ATP-dependent 72.2 4.2 0.00014 43.5 5.9 64 211-280 43-107 (249)
323 3fdi_A Uncharacterized protein 72.0 1.6 5.3E-05 45.7 2.3 24 255-278 7-30 (201)
324 2jee_A YIIU; FTSZ, septum, coi 72.0 54 0.0018 29.2 11.7 38 961-998 8-45 (81)
325 3vfd_A Spastin; ATPase, microt 72.0 1.7 5.7E-05 50.0 2.8 25 253-277 147-171 (389)
326 2dpy_A FLII, flagellum-specifi 71.9 1.6 5.5E-05 51.4 2.6 37 243-279 146-182 (438)
327 1t6n_A Probable ATP-dependent 71.9 8.6 0.0003 39.7 8.1 63 209-277 12-74 (220)
328 1oxx_K GLCV, glucose, ABC tran 71.8 1 3.6E-05 51.4 1.0 25 253-277 30-54 (353)
329 3oja_B Anopheles plasmodium-re 71.4 52 0.0018 39.5 16.0 73 957-1029 507-582 (597)
330 1qde_A EIF4A, translation init 71.2 3.6 0.00012 42.7 5.0 62 212-279 15-77 (224)
331 1ic2_A Tropomyosin alpha chain 71.2 53 0.0018 29.1 11.8 38 966-1003 20-57 (81)
332 2zts_A Putative uncharacterize 71.0 2.8 9.6E-05 44.1 4.1 27 253-279 29-55 (251)
333 3b5x_A Lipid A export ATP-bind 70.8 1.4 5E-05 53.6 2.0 29 252-280 367-395 (582)
334 2qen_A Walker-type ATPase; unk 70.5 2.8 9.7E-05 46.4 4.2 23 255-277 32-54 (350)
335 1qvr_A CLPB protein; coiled co 70.5 2.3 8E-05 54.2 3.9 32 249-280 186-217 (854)
336 3hdt_A Putative kinase; struct 70.5 2 7E-05 45.7 2.8 26 254-279 14-39 (223)
337 3k1j_A LON protease, ATP-depen 70.2 2.2 7.4E-05 52.2 3.4 25 255-279 61-85 (604)
338 1pzn_A RAD51, DNA repair and r 70.0 2 7E-05 48.8 2.9 34 244-277 119-154 (349)
339 3jsv_C NF-kappa-B essential mo 69.8 29 0.001 31.7 9.7 23 1010-1032 66-88 (94)
340 3hu3_A Transitional endoplasmi 69.6 2 6.9E-05 51.2 2.9 26 252-277 236-261 (489)
341 1ry6_A Internal kinesin; kines 68.6 3.4 0.00012 47.3 4.3 36 236-271 66-102 (360)
342 2axn_A 6-phosphofructo-2-kinas 68.4 3 0.0001 50.2 4.0 29 253-281 34-62 (520)
343 1tf7_A KAIC; homohexamer, hexa 68.4 1.9 6.6E-05 51.8 2.3 37 244-280 27-66 (525)
344 3u1c_A Tropomyosin alpha-1 cha 68.3 64 0.0022 29.9 12.2 45 963-1007 27-71 (101)
345 2f9l_A RAB11B, member RAS onco 68.2 2.6 8.7E-05 43.1 2.9 20 256-275 7-26 (199)
346 2b8t_A Thymidine kinase; deoxy 68.1 3.7 0.00013 43.8 4.2 28 253-280 11-38 (223)
347 3qii_A PHD finger protein 20; 68.1 6.4 0.00022 35.5 5.0 45 119-166 28-73 (85)
348 3fht_A ATP-dependent RNA helic 68.0 4.4 0.00015 45.9 5.2 68 208-279 22-90 (412)
349 3b60_A Lipid A export ATP-bind 67.9 1.4 4.8E-05 53.7 1.0 27 252-278 367-393 (582)
350 2c9o_A RUVB-like 1; hexameric 67.7 4.6 0.00016 47.5 5.3 26 254-279 63-88 (456)
351 1yqt_A RNAse L inhibitor; ATP- 67.5 2.3 8E-05 51.3 2.8 26 254-279 47-72 (538)
352 2xxa_A Signal recognition part 67.5 3.6 0.00012 48.3 4.3 30 252-281 98-127 (433)
353 3o0z_A RHO-associated protein 67.4 54 0.0018 33.2 12.1 37 960-996 49-85 (168)
354 2yl4_A ATP-binding cassette SU 67.3 2 7E-05 52.4 2.3 27 252-278 368-394 (595)
355 1e9r_A Conjugal transfer prote 67.2 2.3 7.7E-05 49.6 2.6 29 253-281 52-80 (437)
356 3qf4_B Uncharacterized ABC tra 67.1 2.1 7.2E-05 52.3 2.4 27 252-278 379-405 (598)
357 4hlc_A DTMP kinase, thymidylat 67.1 3 0.0001 43.7 3.2 24 256-279 4-27 (205)
358 1p5z_B DCK, deoxycytidine kina 67.1 1 3.6E-05 48.7 -0.3 26 253-278 23-48 (263)
359 1oix_A RAS-related protein RAB 67.0 2.5 8.5E-05 43.1 2.5 20 256-275 31-50 (191)
360 3a8t_A Adenylate isopentenyltr 66.4 2.3 7.8E-05 48.3 2.2 26 252-277 38-63 (339)
361 2ycu_A Non muscle myosin 2C, a 66.4 0.9 3.1E-05 58.8 -1.2 42 896-937 767-808 (995)
362 1go4_E MAD1 (mitotic arrest de 66.2 17 0.00059 33.7 7.6 66 967-1032 13-95 (100)
363 1bif_A 6-phosphofructo-2-kinas 66.1 3.4 0.00012 48.8 3.8 29 252-280 37-65 (469)
364 2fna_A Conserved hypothetical 66.0 4.4 0.00015 44.8 4.6 24 255-278 31-54 (357)
365 2ce7_A Cell division protein F 65.9 3.2 0.00011 49.4 3.5 25 253-277 48-72 (476)
366 3e1s_A Exodeoxyribonuclease V, 65.8 4.3 0.00015 49.4 4.7 29 254-282 204-232 (574)
367 1hv8_A Putative ATP-dependent 65.8 8.2 0.00028 42.7 6.7 62 212-278 7-68 (367)
368 2qag_B Septin-6, protein NEDD5 65.7 2.8 9.7E-05 49.0 2.9 25 252-276 38-64 (427)
369 2zan_A Vacuolar protein sortin 65.7 2.6 9E-05 49.5 2.7 26 253-278 166-191 (444)
370 2eqb_B RAB guanine nucleotide 65.5 57 0.0019 30.1 10.8 51 957-1007 24-74 (97)
371 1q0u_A Bstdead; DEAD protein, 65.4 5.8 0.0002 41.1 5.1 62 211-278 4-66 (219)
372 3cvf_A Homer-3, homer protein 65.4 21 0.00072 31.7 7.7 53 968-1020 8-60 (79)
373 2pl3_A Probable ATP-dependent 65.2 6.9 0.00024 41.0 5.7 64 211-280 25-89 (236)
374 3cve_A Homer protein homolog 1 65.0 44 0.0015 29.1 9.5 51 970-1020 4-54 (72)
375 1qvr_A CLPB protein; coiled co 65.0 3.3 0.00011 52.8 3.6 26 255-280 589-614 (854)
376 1tq4_A IIGP1, interferon-induc 64.7 3.4 0.00012 48.2 3.4 25 254-278 69-93 (413)
377 3ozx_A RNAse L inhibitor; ATP 64.7 2.8 9.7E-05 50.6 2.8 28 252-279 23-50 (538)
378 3p8d_A Medulloblastoma antigen 64.4 8.9 0.00031 33.0 5.0 45 119-166 13-58 (67)
379 2gno_A DNA polymerase III, gam 64.0 5.3 0.00018 44.5 4.7 34 244-277 8-41 (305)
380 1u0l_A Probable GTPase ENGC; p 63.9 3.2 0.00011 46.0 2.9 24 253-276 168-191 (301)
381 1ypw_A Transitional endoplasmi 63.8 2.8 9.5E-05 53.2 2.6 27 252-278 236-262 (806)
382 3j16_B RLI1P; ribosome recycli 63.8 3 0.0001 51.1 2.8 27 253-279 102-128 (608)
383 1z2a_A RAS-related protein RAB 63.8 3.6 0.00012 40.0 2.9 21 255-275 6-26 (168)
384 1yrb_A ATP(GTP)binding protein 63.8 3.7 0.00013 43.8 3.2 28 252-279 12-39 (262)
385 2qag_C Septin-7; cell cycle, c 63.7 2.8 9.7E-05 48.9 2.4 25 251-275 28-52 (418)
386 3ol1_A Vimentin; structural ge 63.6 85 0.0029 29.9 12.4 69 958-1026 47-115 (119)
387 3hr8_A Protein RECA; alpha and 63.5 4.3 0.00015 46.3 3.9 39 244-282 48-89 (356)
388 3gbj_A KIF13B protein; kinesin 63.4 5.3 0.00018 45.6 4.6 21 251-271 90-110 (354)
389 2dhr_A FTSH; AAA+ protein, hex 63.4 3.1 0.00011 49.7 2.8 25 254-278 64-88 (499)
390 3pxi_A Negative regulator of g 63.2 3.6 0.00012 51.6 3.5 24 256-279 523-546 (758)
391 2rcn_A Probable GTPase ENGC; Y 63.2 3.4 0.00012 47.3 2.9 26 253-278 214-239 (358)
392 1f5n_A Interferon-induced guan 63.2 86 0.0029 38.1 15.4 22 253-274 37-58 (592)
393 4a82_A Cystic fibrosis transme 63.1 1.9 6.6E-05 52.5 0.9 27 252-278 365-391 (578)
394 2zej_A Dardarin, leucine-rich 62.9 3 0.0001 41.9 2.2 20 256-275 4-23 (184)
395 2v71_A Nuclear distribution pr 62.8 51 0.0018 34.0 11.3 64 964-1027 47-110 (189)
396 3dc4_A Kinesin-like protein NO 62.8 5.1 0.00017 45.5 4.3 21 251-271 92-112 (344)
397 2equ_A PHD finger protein 20-l 62.7 18 0.00063 31.7 6.8 50 118-167 12-62 (74)
398 3lda_A DNA repair protein RAD5 62.6 3 0.0001 48.5 2.4 32 244-275 166-199 (400)
399 2r44_A Uncharacterized protein 62.6 3.9 0.00013 45.5 3.3 24 255-278 47-70 (331)
400 1bg2_A Kinesin; motor protein, 62.6 5.5 0.00019 44.9 4.4 21 251-271 75-95 (325)
401 3qf4_A ABC transporter, ATP-bi 62.6 2.3 7.8E-05 51.9 1.4 28 252-279 367-394 (587)
402 2p67_A LAO/AO transport system 62.6 7.6 0.00026 43.8 5.7 41 243-283 44-85 (341)
403 2zj8_A DNA helicase, putative 62.4 4.9 0.00017 50.0 4.5 63 213-280 3-66 (720)
404 2qnr_A Septin-2, protein NEDD5 62.2 3 0.0001 46.3 2.2 25 252-276 16-40 (301)
405 2dyk_A GTP-binding protein; GT 62.0 4.1 0.00014 39.4 2.9 20 256-275 3-22 (161)
406 3tnu_B Keratin, type II cytosk 61.8 47 0.0016 32.1 10.4 60 959-1018 36-106 (129)
407 3eiq_A Eukaryotic initiation f 61.8 9.8 0.00033 43.1 6.5 62 211-278 40-102 (414)
408 4hcz_A PHD finger protein 1; p 61.6 26 0.00089 29.2 7.0 49 117-165 5-55 (58)
409 4a14_A Kinesin, kinesin-like p 61.6 5.8 0.0002 45.1 4.5 21 251-271 81-101 (344)
410 2orw_A Thymidine kinase; TMTK, 61.4 4.4 0.00015 41.6 3.1 25 254-278 3-28 (184)
411 3u1c_A Tropomyosin alpha-1 cha 61.3 1E+02 0.0035 28.5 12.5 46 964-1009 21-66 (101)
412 2wji_A Ferrous iron transport 61.1 4 0.00014 40.2 2.7 21 255-275 4-24 (165)
413 2ce2_X GTPase HRAS; signaling 61.1 3.8 0.00013 39.4 2.5 20 256-275 5-24 (166)
414 4i1u_A Dephospho-COA kinase; s 60.9 2.4 8.3E-05 44.8 1.1 46 255-304 10-64 (210)
415 3nwn_A Kinesin-like protein KI 60.9 5.4 0.00019 45.6 4.1 21 251-271 102-122 (359)
416 2zr9_A Protein RECA, recombina 60.9 4.5 0.00015 46.0 3.4 30 253-282 60-89 (349)
417 2y65_A Kinesin, kinesin heavy 60.7 6.1 0.00021 45.3 4.4 21 251-271 82-102 (365)
418 1r6b_X CLPA protein; AAA+, N-t 60.6 4.8 0.00016 50.4 3.9 24 255-278 489-512 (758)
419 2v3c_C SRP54, signal recogniti 60.6 4.1 0.00014 47.7 3.1 29 254-282 99-127 (432)
420 1s2m_A Putative ATP-dependent 60.5 11 0.00039 42.4 6.8 60 210-275 20-79 (400)
421 2wbe_C Bipolar kinesin KRP-130 60.5 6.7 0.00023 45.1 4.8 35 236-271 83-118 (373)
422 1u8z_A RAS-related protein RAL 60.5 4.5 0.00015 39.1 2.9 21 255-275 5-25 (168)
423 1tf7_A KAIC; homohexamer, hexa 60.3 4.2 0.00014 48.7 3.2 35 246-280 271-307 (525)
424 2owm_A Nckin3-434, related to 60.0 7.2 0.00025 45.9 5.0 21 251-271 134-154 (443)
425 2fz4_A DNA repair protein RAD2 60.0 4.7 0.00016 42.9 3.2 33 243-278 100-132 (237)
426 2wjg_A FEOB, ferrous iron tran 60.0 4.3 0.00015 40.5 2.7 21 255-275 8-28 (188)
427 3fe2_A Probable ATP-dependent 59.9 14 0.00047 39.0 6.9 66 209-280 27-93 (242)
428 2j37_W Signal recognition part 59.9 9 0.00031 45.8 5.9 30 253-282 100-129 (504)
429 3fmp_B ATP-dependent RNA helic 59.9 7 0.00024 45.8 5.0 61 209-273 90-150 (479)
430 3oja_B Anopheles plasmodium-re 59.8 47 0.0016 39.9 12.5 68 964-1031 507-577 (597)
431 3thx_A DNA mismatch repair pro 59.7 5.2 0.00018 51.4 4.0 30 253-282 661-692 (934)
432 1goj_A Kinesin, kinesin heavy 59.6 6.2 0.00021 45.1 4.2 36 235-271 62-98 (355)
433 1x88_A Kinesin-like protein KI 59.6 6.9 0.00024 44.7 4.7 21 251-271 86-106 (359)
434 2m0o_A PHD finger protein 1; t 59.6 50 0.0017 29.0 8.7 47 118-164 29-77 (79)
435 2ged_A SR-beta, signal recogni 59.5 4.6 0.00016 40.6 2.9 21 255-275 49-69 (193)
436 3p32_A Probable GTPase RV1496/ 59.4 9 0.00031 43.4 5.6 44 239-282 63-107 (355)
437 3lre_A Kinesin-like protein KI 59.3 5.7 0.00019 45.3 3.9 21 251-271 103-123 (355)
438 3bk7_A ABC transporter ATP-bin 59.2 3.9 0.00013 50.1 2.7 25 254-278 117-141 (607)
439 2nr8_A Kinesin-like protein KI 59.1 6.1 0.00021 45.2 4.1 21 251-271 101-121 (358)
440 1ek0_A Protein (GTP-binding pr 59.0 4.9 0.00017 39.0 2.9 20 256-275 5-24 (170)
441 2v71_A Nuclear distribution pr 59.0 90 0.0031 32.2 12.3 59 972-1030 48-106 (189)
442 1ky3_A GTP-binding protein YPT 58.9 4.9 0.00017 39.6 2.9 22 254-275 8-29 (182)
443 2r2a_A Uncharacterized protein 58.9 4.5 0.00015 42.2 2.7 18 256-273 7-24 (199)
444 2zfi_A Kinesin-like protein KI 58.9 6.8 0.00023 44.9 4.4 21 251-271 87-107 (366)
445 3l0o_A Transcription terminati 58.8 8.1 0.00028 44.7 5.0 59 207-280 143-201 (427)
446 3t0q_A AGR253WP; kinesin, alph 58.7 6.5 0.00022 44.7 4.2 22 250-271 82-103 (349)
447 3bor_A Human initiation factor 58.6 7 0.00024 41.2 4.2 28 243-273 59-86 (237)
448 3bh0_A DNAB-like replicative h 58.5 5.6 0.00019 44.3 3.6 27 252-278 66-92 (315)
449 1kao_A RAP2A; GTP-binding prot 58.3 5.1 0.00018 38.6 2.9 21 255-275 4-24 (167)
450 2va8_A SSO2462, SKI2-type heli 58.1 6.1 0.00021 49.1 4.2 63 213-280 10-73 (715)
451 3ly5_A ATP-dependent RNA helic 58.1 11 0.00038 40.5 5.8 36 242-280 82-118 (262)
452 1v5w_A DMC1, meiotic recombina 57.8 5.5 0.00019 45.0 3.4 33 244-276 110-144 (343)
453 2i1j_A Moesin; FERM, coiled-co 57.7 7.2 0.00025 47.4 4.6 156 934-1144 301-461 (575)
454 1c1y_A RAS-related protein RAP 57.7 5.3 0.00018 38.7 2.9 20 256-275 5-24 (167)
455 1t5c_A CENP-E protein, centrom 57.7 5.8 0.0002 45.2 3.6 21 251-271 75-95 (349)
456 3ozx_A RNAse L inhibitor; ATP 57.7 3.9 0.00013 49.3 2.3 27 253-279 293-319 (538)
457 1pui_A ENGB, probable GTP-bind 57.6 3.1 0.00011 42.5 1.2 24 252-275 24-47 (210)
458 3szr_A Interferon-induced GTP- 57.5 4 0.00014 50.0 2.4 21 257-277 48-68 (608)
459 1z08_A RAS-related protein RAB 57.5 5.3 0.00018 38.9 2.9 21 255-275 7-27 (170)
460 1z0j_A RAB-22, RAS-related pro 57.5 5.4 0.00018 38.8 2.9 19 256-274 8-26 (170)
461 1wt6_A Myotonin-protein kinase 57.4 70 0.0024 28.4 9.4 31 976-1006 27-57 (81)
462 1qhl_A Protein (cell division 57.3 2.7 9.3E-05 44.9 0.7 26 257-282 30-55 (227)
463 1wms_A RAB-9, RAB9, RAS-relate 57.2 5.4 0.00018 39.2 2.9 21 255-275 8-28 (177)
464 2www_A Methylmalonic aciduria 56.9 9.8 0.00033 43.1 5.3 29 254-282 74-102 (349)
465 2jee_A YIIU; FTSZ, septum, coi 56.9 75 0.0026 28.3 9.6 23 973-995 27-49 (81)
466 2erx_A GTP-binding protein DI- 56.8 5.3 0.00018 38.8 2.7 21 255-275 4-24 (172)
467 2fn4_A P23, RAS-related protei 56.8 4.9 0.00017 39.5 2.5 21 255-275 10-30 (181)
468 3b6u_A Kinesin-like protein KI 56.7 7.1 0.00024 44.8 4.1 21 251-271 99-119 (372)
469 3iv1_A Tumor susceptibility ge 56.5 77 0.0026 28.1 9.6 68 969-1036 10-77 (78)
470 2h58_A Kinesin-like protein KI 56.5 6.5 0.00022 44.4 3.7 21 251-271 78-98 (330)
471 3u59_A Tropomyosin beta chain; 56.4 1.2E+02 0.0042 27.8 12.3 82 953-1034 17-101 (101)
472 2vvg_A Kinesin-2; motor protei 56.4 7 0.00024 44.5 3.9 21 251-271 87-107 (350)
473 1v8k_A Kinesin-like protein KI 56.4 6.4 0.00022 45.8 3.6 21 251-271 152-172 (410)
474 3of5_A Dethiobiotin synthetase 56.3 7.5 0.00026 41.3 4.0 30 254-283 4-34 (228)
475 3b6e_A Interferon-induced heli 56.2 4.7 0.00016 41.3 2.3 34 243-279 40-73 (216)
476 1u94_A RECA protein, recombina 55.9 7.1 0.00024 44.5 3.9 30 253-282 62-91 (356)
477 3ux8_A Excinuclease ABC, A sub 55.9 3.2 0.00011 51.4 1.1 23 253-275 347-369 (670)
478 1nrj_B SR-beta, signal recogni 55.9 5.7 0.0002 40.9 2.9 23 254-276 12-34 (218)
479 1c9k_A COBU, adenosylcobinamid 55.8 5 0.00017 41.4 2.3 19 257-275 2-20 (180)
480 3tnu_A Keratin, type I cytoske 55.8 43 0.0015 32.5 8.9 29 990-1018 80-108 (131)
481 3cob_A Kinesin heavy chain-lik 55.6 5.9 0.0002 45.5 3.2 21 251-271 77-97 (369)
482 2lkc_A Translation initiation 55.5 5.8 0.0002 39.0 2.8 23 253-275 7-29 (178)
483 3lxx_A GTPase IMAP family memb 55.4 5.5 0.00019 42.1 2.7 22 254-275 29-50 (239)
484 2r6a_A DNAB helicase, replicat 55.3 6.5 0.00022 46.2 3.6 28 253-280 202-229 (454)
485 2a9k_A RAS-related protein RAL 55.1 6.1 0.00021 39.0 2.9 21 255-275 19-39 (187)
486 1z0f_A RAB14, member RAS oncog 55.1 6.2 0.00021 38.7 2.9 21 255-275 16-36 (179)
487 1g16_A RAS-related protein SEC 55.0 5.6 0.00019 38.6 2.5 20 256-275 5-24 (170)
488 3pqc_A Probable GTP-binding pr 54.9 5.1 0.00017 40.0 2.3 20 256-275 25-44 (195)
489 2nzj_A GTP-binding protein REM 54.9 5.9 0.0002 38.7 2.7 20 256-275 6-25 (175)
490 1upt_A ARL1, ADP-ribosylation 54.8 6.3 0.00022 38.4 2.9 20 255-274 8-27 (171)
491 2fh5_B SR-beta, signal recogni 54.6 6.4 0.00022 40.4 3.0 25 251-275 4-28 (214)
492 4dsu_A GTPase KRAS, isoform 2B 54.6 6.3 0.00021 39.1 2.9 20 256-275 6-25 (189)
493 1r2q_A RAS-related protein RAB 54.6 6.4 0.00022 38.1 2.9 21 255-275 7-27 (170)
494 1r8s_A ADP-ribosylation factor 54.6 6.5 0.00022 38.1 2.9 19 257-275 3-21 (164)
495 3con_A GTPase NRAS; structural 54.5 6.3 0.00022 39.4 2.9 21 255-275 22-42 (190)
496 2gj8_A MNME, tRNA modification 54.5 6.3 0.00022 39.2 2.9 22 254-275 4-25 (172)
497 2heh_A KIF2C protein; kinesin, 54.4 8 0.00027 44.6 4.0 21 251-271 132-152 (387)
498 2v4h_A NF-kappa-B essential mo 54.4 95 0.0032 29.2 10.3 44 980-1023 62-108 (110)
499 1f9v_A Kinesin-like protein KA 54.3 7.4 0.00025 44.3 3.7 21 251-271 82-102 (347)
500 3bc1_A RAS-related protein RAB 54.3 6.4 0.00022 39.1 2.9 20 257-276 14-33 (195)
No 1
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=1.8e-215 Score=2050.99 Aligned_cols=823 Identities=42% Similarity=0.703 Sum_probs=755.7
Q ss_pred ccCcEEEEecCCCCEEeEEEEEe---cCCeeEEEcCCCcEEEEeC----CCccc-CCCCccCCccccccCCCCCchhHHH
Q 001068 117 KKKLQSWFQLPNGNWELGKILSI---SGTESVISLPEGKVLKVKS----ENLVS-ANPDILDGVDDLMQLSYLNEPSVLY 188 (1166)
Q Consensus 117 ~~~~~vw~~~~~~~~~~~~v~~~---~~~~~~v~~~~g~~~~v~~----~~~~~-~np~~~~~v~Dl~~L~~LnE~svL~ 188 (1166)
.++.+||+|+|+++|..|+|++. +++.++|.+++|++++|+. +++.| +||+.++++|||+.|++|||++|||
T Consensus 8 ~~g~~vwv~~~~~~~~~~~v~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~np~~~~~~~Dl~~L~~l~e~~vl~ 87 (1080)
T 2dfs_A 8 TKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPPLRNPDILVGENDLTALSYLHEPAVLH 87 (1080)
T ss_dssp CTTCEEEEEETTTEEEEEECSSCCCTTCSEEECCCSSSSCCEEECCTTTCCCCCBCCCGGGSSCSBSTTCSSCSHHHHHH
T ss_pred ccCCEEEEECCCCceEEEEEEeeecCCCceEEEEECCCCEEEEecCCcccccccccCcccccchhhhhhhhhcchHHHHH
Confidence 44679999999999999999973 3446888888998888876 45777 5999999999999999999999999
Q ss_pred HHHHHh-hcCccccccCCceEEeCCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHcCceEEEEEcCCCCC
Q 001068 189 NLHYRY-KQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGA 265 (1166)
Q Consensus 189 ~L~~Ry-~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGa 265 (1166)
||+.|| ..+.||||+|+||||||||+++|+|+++++..|+++... ||||||||+.||++|+++++||||||||||||
T Consensus 88 nL~~Ry~~~~~iYTy~G~iLiavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGA 167 (1080)
T 2dfs_A 88 NLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGA 167 (1080)
T ss_dssp HHHHHHHTTCCCEEEETTEEEEECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTS
T ss_pred HHHHHHHhcCCchhccCceeEEecCCcccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCC
Confidence 999999 999999999999999999999999999999999998764 89999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhccCCC---CchhhhhhhhHHHHhhcCcccCCCCCCCccccEEEEEEcCCCceecceeeeeecccc
Q 001068 266 GKTETAKIAMQYLAALGGGS---GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKS 342 (1166)
Q Consensus 266 GKTe~~K~il~yLa~~~~~~---~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~F~~~g~i~Ga~i~~yLLEKs 342 (1166)
||||++|+||+||+++++++ .|+++|+++||||||||||||++|||||||||||+|+||.+|.|+||+|.+||||||
T Consensus 168 GKTe~~K~i~~yla~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLLEKs 247 (1080)
T 2dfs_A 168 GKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKS 247 (1080)
T ss_dssp SHHHHHHHHHHHHHHTTTCCTTTCTHHHHHHHHHHHHHHHEEEETTEEEEECSEEEEEEEECTTCCEEEEEEEEECCCCG
T ss_pred CccchHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHhcCCcCCCCCCccccceeEEEEECCCCCEeeecceeEeecCc
Confidence 99999999999999998764 799999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcchhHHHHhcCCCHHhHhhcCCCCccccccccCCCccCCCCcchHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 001068 343 RVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFA 422 (1166)
Q Consensus 343 RVv~q~~gERnfHIFYqLl~g~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~ 422 (1166)
|||+|++||||||||||||+|+++++++.|+|.++.+|+||++++|..++++||+++|..++.||++|||+++++..||+
T Consensus 248 RVv~q~~~ERnfHIFYqllag~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~A~~~lg~~~~e~~~i~~ 327 (1080)
T 2dfs_A 248 RVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFR 327 (1080)
T ss_dssp GGTCCCTTCCSBHHHHHHHHTTTSSGGGGTCCCCTTTCTTTSTTSCCSCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred eeeccCCCCCcchhHHHHHcCCChHHHHHccCCCHHhcCcccCCCCCCCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCeeeEEeCCCCccccCChhHHHHHHHHhCCCHHHHHHhHccceeeeCCceEEecCCHHHHHHHHHHHHHHH
Q 001068 423 MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSI 502 (1166)
Q Consensus 423 iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~i~~~~e~~~~~lt~~qA~~~rdalak~L 502 (1166)
|||||||||||+|...+++....+.+++.++.||.||||++++|.++||++++.+++|.+++++|++||.++||||||+|
T Consensus 328 ilaaILhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~l 407 (1080)
T 2dfs_A 328 ILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHI 407 (1080)
T ss_dssp HHHHHHHHTTCCCEEETTTEEECCSSCHHHHHHHHHHTCCHHHHHHHHHEEEECC----EEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCceEEecCCcceeecCChHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceEEeCCCHHHHHHHHHHHHHHH
Confidence 99999999999998766543333478899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcCCCCCCcceEEEeecccCcCCCCCChHHHHHhhhhhHHHHhHhhhhhHHHHHHHHhcCCcccc
Q 001068 503 YACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAK 582 (1166)
Q Consensus 503 Y~~LF~wiV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~ey~~EgI~~~~ 582 (1166)
|++||+|||.+||.+|.... ....+||||||||||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|+.
T Consensus 408 Y~~LF~wlV~~iN~~l~~~~-~~~~~IgvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~ 486 (1080)
T 2dfs_A 408 YANLFNWIVDHVNKALHSTV-KQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTL 486 (1080)
T ss_dssp HHHHHHHHHHHHHHHHCCSS-CCCEEEEEEEECCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTC
T ss_pred HHHHHHHHHHHHHHhhcccc-ccCceEEeeccCCccccCcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCcccc
Confidence 99999999999999998653 34689999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcHhHHHhhcCCCccccccccccCCCCCChHHHHHHHHHHh-CCCCCcccCC--CCCeEEEeecceeeecccchhh
Q 001068 583 VDFEDNKDCLNLFEKPLGLLSLLDEESTFPNGTDLTFANKLKQHL-NSNPCFRGER--DKSFTVSHYAGEVIYDTTGFLE 659 (1166)
Q Consensus 583 v~f~dn~~~ldLie~p~Gll~lLDee~~~p~~td~~f~~kl~~~~-~~~~~f~~~~--~~~F~I~HyaG~V~Y~~~gfle 659 (1166)
|+|.||++||||||+|.|||+||||||++|++||.+|++||+.+| ++|++|.+++ ..+|+|+||||+|+|+++|||+
T Consensus 487 i~f~dn~~~idlie~~~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfle 566 (1080)
T 2dfs_A 487 IDFYDNQPCINLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLE 566 (1080)
T ss_dssp CCCCCCHHHHHHHHSTTSHHHHHHHHTTSTTCCHHHHHHHHHHHHBTTBSSEECCTTCSSEEEEECSSCEEEEECTTHHH
T ss_pred ccccccHHHHHHHhcCCceeeeccccccCCCCChHHHHHHHHHHhhcCCCCccCCCCCCCceEEEecceEEEEehhhHHH
Confidence 999999999999999999999999999999999999999999988 9999998775 5799999999999999999999
Q ss_pred hccCcCcHHHHHHHhhc-Ccch-hHHhhccccccC---CC---------CccCCCc--cCCCCCCCCccHHHHHHHHHHH
Q 001068 660 KNRDLLHLDSIELLSSC-SCHL-PQIFASNMLSQS---NK---------PVVGPLY--KAGGADSQKLSVATKFKGQLFQ 723 (1166)
Q Consensus 660 KN~D~l~~d~~~ll~~s-~~~l-~~lf~~~~~~~s---~~---------~~~~~~~--~~~~~~~~~~tv~~~fk~qL~~ 723 (1166)
||+|+|++|++++|++| ++.+ ..+|.......+ .. ....+.+ .+++...+++||+++|+.||+.
T Consensus 567 KN~D~l~~~~~~ll~~S~~~~~v~~lf~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~sL~~ 646 (1080)
T 2dfs_A 567 KNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHL 646 (1080)
T ss_dssp HHBCCCCHHHHHHHHTCSSCSHHHHSCC-------------------------------------CCCBHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHcccccHHHHHHhcccccccccccccccccccccccccccccccccccccCCCCcHHHHHHHHHHH
Confidence 99999999999999999 8875 567754321100 00 0000000 0022344578999999999999
Q ss_pred HHHHHhccCCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHHHHHHhhhhccccccCCChHH
Q 001068 724 LMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLS 803 (1166)
Q Consensus 724 Lm~~L~~t~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~~~ 803 (1166)
||++|++|+||||||||||+.+.|+.||.++|++||||+||||+|||+|+|||+|++|.+|+.||++|+|...+..|+++
T Consensus 647 Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~eF~~RY~~L~~~~~~~~d~k~ 726 (1080)
T 2dfs_A 647 LMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDRKQ 726 (1080)
T ss_dssp HHHHHHSSEEEEEEEECCCSSCCTTCCCHHHHHHHHHTTTHHHHHHHHTTSCCEEEEHHHHHHHHTTTSCGGGCCSSHHH
T ss_pred HHHHHHhcCCeeEEEecCCCCCCchhcCHHhhHHHHhhcccHHHHhHHhcCCCchhhHHHHHHHHHHHCCccCCCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997665559999
Q ss_pred HHHHHHHHcCcCCcceeecceeeeeeeccccccccccccccc-chhhhhhhhcccccchhhhccchhhhhHHHHHHhHHH
Q 001068 804 VSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLH-GILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKI 882 (1166)
Q Consensus 804 ~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R~~~l~-aav~IQa~~Rg~~aRr~y~~lr~aai~IQs~~RG~~a 882 (1166)
.|+.||..++++++.|++|+||||||++.+..||..|...+. +++.||++||||++|++|++++.+++.||++|||+++
T Consensus 727 ~~~~il~~~~~~~~~~~~G~TKVF~r~g~l~~LE~~R~~~l~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~a 806 (1080)
T 2dfs_A 727 TCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQA 806 (1080)
T ss_dssp HHHHHHTTTSCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCChhhheeccccchhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988776 5789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHhhHHHHHHHHHhhhh
Q 001068 883 RKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLL 941 (1166)
Q Consensus 883 Rr~y~~l~~r~~AAi~IQ~~~R~~~aRk~~~~~r~aai~IQs~~Rg~laRr~~~~lr~~ 941 (1166)
|+.|..++ +.+||+.||++||+|.+|+.|..++.+++.||+.|||+++|+.+..++..
T Consensus 807 R~~~~~lr-~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~lr~~ 864 (1080)
T 2dfs_A 807 RCYATFLR-RTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLRE 864 (1080)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccc-cchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998765 67899999999999999999999999999999999999999999877653
No 2
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=2e-207 Score=1920.65 Aligned_cols=783 Identities=40% Similarity=0.701 Sum_probs=705.5
Q ss_pred CCCccccCCcccccccccccccCcEEEEecCCCCEEeEEEEEecCCeeEEEc-CCCcEEEEeCCCcccCCCCccCCcccc
Q 001068 97 PSVSASHTDRRWSDTTSYAGKKKLQSWFQLPNGNWELGKILSISGTESVISL-PEGKVLKVKSENLVSANPDILDGVDDL 175 (1166)
Q Consensus 97 p~~~~~~~~~~~~~~~~~~~~~~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~-~~g~~~~v~~~~~~~~np~~~~~v~Dl 175 (1166)
|.+..+..+..=.++.+|..++ +||+++++++|..|+|++..+++++|.+ ++|++++|+.+++.|+||+.++++|||
T Consensus 11 ~~l~~~~~~~~~~~~~~~~~~~--~vWv~~~~~~~~~~~v~~~~~~~~~v~~~~~g~~~~v~~~~~~~~np~~~~~~~Dl 88 (837)
T 1kk8_A 11 QYLAVDRKKLMKEQTAAFDGKK--NCWVPDEKEGFASAEIQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKFEKLEDM 88 (837)
T ss_dssp TTTCCCSSSSCC--CCCCCTTT--EEEEEETTTEEEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEECCCGGGTTCSBG
T ss_pred hhhhcCHHHHHHhhhcccccCC--EEEEECCCCCeeEEEEEeecCCeEEEEEcCCCceEEeeHHHccccCchhhcchhhh
Confidence 4555544333333555777665 8999999999999999999999999996 478899999999999999999999999
Q ss_pred ccCCCCCchhHHHHHHHHhhcCccccccCCceEEeCCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHcCc
Q 001068 176 MQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEV 253 (1166)
Q Consensus 176 ~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~ 253 (1166)
+.|++|||++|||||+.||..++||||+|++|||||||+++|+|+++++..|+++... ||||||||+.||++|+++++
T Consensus 89 ~~L~~l~E~svL~nL~~Ry~~~~IYTy~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~ 168 (837)
T 1kk8_A 89 ANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRE 168 (837)
T ss_dssp GGSSCCSHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTS
T ss_pred hhhhcccHHHHHHHHHHHHhcCCceeeccceeEEeCCCcCCCCCCHHHHHHhcCCCcCCCCCcHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999998765 89999999999999999999
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHHhccCC-------------CCchhhhhhhhHHHHhhcCcccCCCCCCCccccEEE
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLAALGGG-------------SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIE 320 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~~~~~-------------~~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~ 320 (1166)
||||||||||||||||++|+||+||++++++ +.|+++|+++||||||||||||++|||||||||||+
T Consensus 169 nQsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~ 248 (837)
T 1kk8_A 169 NQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIR 248 (837)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHHSCCCCCC--------CCCHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEE
T ss_pred CcEEEEeCCCCCCchhhHHHHHHHHHHhcccCCcccccccccccccHHHHHHHHHHHHHHhcCccCCCCCCCCCceeEEE
Confidence 9999999999999999999999999999763 257899999999999999999999999999999999
Q ss_pred EEEcCCCceecceeeeeeccccccccccCCCCcchhHHHHhcCCCHHhHhhcCC-CCccccccccCCCccCCCCcchHHH
Q 001068 321 IHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNL-MSAKEYKYLRQSSCYSINGVDDAEQ 399 (1166)
Q Consensus 321 l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERnfHIFYqLl~g~~~~~r~~l~L-~~~~~y~yL~~~~~~~~~~~dD~~~ 399 (1166)
|+||.+|.|+||+|++|||||||||.|++||||||||||||+|+++++++.|+| .++.+|+||+++. ..++++||+++
T Consensus 249 i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~~~~l~L~~~~~~y~yL~~g~-~~~~~~dD~~~ 327 (837)
T 1kk8_A 249 IHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQGC-LTVDNIDDVEE 327 (837)
T ss_dssp EEECTTSSEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHTSCSSGGGHHHHTCCSCGGGCTTTCSSC-SCBTTBCHHHH
T ss_pred EEECCCCCEeeeEEEEEeccCceeeeecCCCCceeehHHHHcCCCHHHHHHhCCCCChhhcccccCCC-cccCCcChHHH
Confidence 999999999999999999999999999999999999999999999999999999 7899999999975 78999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeeEEeCCCCccccCChhHHHHHHHHhCCCHHHHHHhHccceeeeCC
Q 001068 400 FRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGN 479 (1166)
Q Consensus 400 f~~~~~Al~~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~i~~~~ 479 (1166)
|+.+++||++|||+++++..||+|||||||||||+|...++++.+++.+.+.++.||.||||++++|.++||++++.+|+
T Consensus 328 f~~~~~Am~~lGfs~~e~~~i~~ilAaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~ 407 (837)
T 1kk8_A 328 FKLCDEAFDILGFTKEEKQSMFKCTASILHMGEMKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGT 407 (837)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEC----CCCEESCSHHHHHHHHHHTSCHHHHHHHHHSCEEC---
T ss_pred HHHHHHHHHhcCcCHHHHHHHHHHHHHHHhhccceEEecCCCCccccCCHHHHHHHHHHHCCCHHHHHHHhcCcEEEcCC
Confidence 99999999999999999999999999999999999998766677889999999999999999999999999999999999
Q ss_pred ceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEEEeecccCcCCCCCChHHHHHhhhhhHHHH
Q 001068 480 DTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQ 559 (1166)
Q Consensus 480 e~~~~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~ 559 (1166)
|.+++++|++||.++||||||+||++||+|||.+||.+|... .....+||||||||||+|+.|||||||||||||+|||
T Consensus 408 e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~-~~~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq 486 (837)
T 1kk8_A 408 EMVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTK-AKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQ 486 (837)
T ss_dssp -CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHH
T ss_pred ceEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCcceEEEEecCCccccccccHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999843 3456899999999999999999999999999999999
Q ss_pred hHhhhhhHHHHHHHHhcCCcccccccC-CcHhHHHhhcCCCccccccccccCCCCCChHHHHHHH-HHHhCCCCCcccCC
Q 001068 560 HFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKPLGLLSLLDEESTFPNGTDLTFANKL-KQHLNSNPCFRGER 637 (1166)
Q Consensus 560 ~f~~~~F~~eq~ey~~EgI~~~~v~f~-dn~~~ldLie~p~Gll~lLDee~~~p~~td~~f~~kl-~~~~~~~~~f~~~~ 637 (1166)
+||+|+|+.||+||.+|||+|+.|+|. ||++||||||+|.|||+||||||++|++||.+|++|| .+++++|++|.+++
T Consensus 487 ~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiekp~GIlslLDEec~~p~~tD~tf~~kl~~~~~~~~~~f~~p~ 566 (837)
T 1kk8_A 487 FFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPG 566 (837)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHSTTSHHHHHHHHTTCTTCCHHHHHHHHHHHHTTTCSSEECCC
T ss_pred HHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhcCCcHHHHHHHHhcCCCCChHHHHHHHHHHhcCCCcCccCCC
Confidence 999999999999999999999999995 9999999999999999999999999999999999996 56789999997664
Q ss_pred --------CCCeEEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCC
Q 001068 638 --------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADS 708 (1166)
Q Consensus 638 --------~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~s~~~l-~~lf~~~~~~~s~~~~~~~~~~~~~~~~ 708 (1166)
..+|+|+||||+|+|+++|||+||+|+|++|++++|++|++.+ ..+|..... .++ .+ .+..+...
T Consensus 567 ~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~Lf~~~~~-~~g---~~--~~~k~~~~ 640 (837)
T 1kk8_A 567 KPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEE-PAG---GG--KKKKGKSS 640 (837)
T ss_dssp SCSSTTCCCCSEEEEETTEEEEECCSSHHHHHSCCCCHHHHHHHHTCSSHHHHHHTCC----------------------
T ss_pred ccccccccCCceEEeeccCcccccHHHHHHhccccccHHHHHHHHhchHHHHHHHhccccc-ccC---CC--CCCCCCCC
Confidence 5689999999999999999999999999999999999999875 568864321 000 01 01111123
Q ss_pred CCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHHHHHHh
Q 001068 709 QKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRY 788 (1166)
Q Consensus 709 ~~~tv~~~fk~qL~~Lm~~L~~t~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY 788 (1166)
...||+++||.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|+.||
T Consensus 641 ~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~f~eF~~RY 720 (837)
T 1kk8_A 641 AFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEFKQRY 720 (837)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTEEEEEEEEECCCSSCCTTCCCHHHHHHHHTTSSSCC-----CCCSCEEEEHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHccCCeeeeeeCCCccCCcccccchheeeeccccCccHHHHHHHHhccccccHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccC--CChHHHHHHHHHHcCcCCcceeecceeeeeeecccccccccccccccchhhhhhhhcccccchhhhcc
Q 001068 789 GFLLLESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKEL 866 (1166)
Q Consensus 789 ~~L~~~~~~~--~d~~~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R~~~l~aav~IQa~~Rg~~aRr~y~~l 866 (1166)
++|.+...+. .|+++.|+.||..+++++++|++|+||||||++++..||+.|+..+..
T Consensus 721 ~~L~~~~~~~~~~d~k~~~~~ll~~~~~~~~~~~~G~TKVF~r~~~~~~LE~~r~~~l~~-------------------- 780 (837)
T 1kk8_A 721 SILAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERLSK-------------------- 780 (837)
T ss_dssp GGGSGGGCCC---CHHHHHHHHHHHHTCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHH--------------------
T ss_pred HHhcccccccCCCCHHHHHHHHHHHcCCCccceeecCEEEEehhhHHHHHHHHHHHHHHh--------------------
Confidence 9999987663 589999999999999999999999999999999999999998765543
Q ss_pred chhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001068 867 RRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQK 911 (1166)
Q Consensus 867 r~aai~IQs~~RG~~aRr~y~~l~~r~~AAi~IQ~~~R~~~aRk~ 911 (1166)
.++.||++||||++|++|.+++.++.|+++||++||+|++|+.
T Consensus 781 --~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~ 823 (837)
T 1kk8_A 781 --IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 823 (837)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4788999999999999999888788899999999999988664
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=1.8e-203 Score=1979.49 Aligned_cols=775 Identities=38% Similarity=0.645 Sum_probs=712.3
Q ss_pred ccccccCcEEEEecCCCCEEeEEEEEecCCeeEEEc-CCCcEEEEeCCCcccCCCCccCCccccccCCCCCchhHHHHHH
Q 001068 113 SYAGKKKLQSWFQLPNGNWELGKILSISGTESVISL-PEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLH 191 (1166)
Q Consensus 113 ~~~~~~~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~-~~g~~~~v~~~~~~~~np~~~~~v~Dl~~L~~LnE~svL~~L~ 191 (1166)
+|..+ .+||+|+|+++|.+|+|++..|++++|.+ ++|++++|+.+++.|+||+.+++++||+.|++|||++|||||+
T Consensus 27 ~~~~~--~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~~~n~~~~~~~~Dl~~l~~l~e~~vl~~L~ 104 (1184)
T 1i84_S 27 DWSAK--KLVWVPSEKHGFEAASIKEEKGDEVTVELQENGKKVTLSKDDIQKMNPPKFSKVEDMAELTCLNEASVLHNLR 104 (1184)
T ss_dssp HTTCT--TEEEECCTTTSSEEEEEEEEETTEEEEEETTTCCEEEEETTSCEECCCGGGTTCSBTTSSSCCCTTHHHHHHH
T ss_pred CcccC--CeEEEECCCCCeEEEEEEEecCCeEEEEEcCCCcEEEeeHHHccCCCCccccccchhhhhccccHHHHHHHHH
Confidence 45544 48999999999999999999999999985 5888999999999999999999999999999999999999999
Q ss_pred HHhhcCccccccCCceEEeCCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhH
Q 001068 192 YRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTE 269 (1166)
Q Consensus 192 ~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe 269 (1166)
.||..+.||||+|+||||||||+++|||+++++..|+++... ||||||||+.||++|+.+++||||||||||||||||
T Consensus 105 ~Ry~~~~iyT~~g~~li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~aia~~ay~~m~~~~~~Q~i~isGeSGaGKTe 184 (1184)
T 1i84_S 105 ERYFSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTE 184 (1184)
T ss_dssp HHHHHTCCEEEETTEEEEECCCSCCSCCSHHHHHHHSSCCSSSSCCCHHHHHHHHHHHHHHHTCCEEEECCCSTTSSTTH
T ss_pred HHhcCCCcEEecCcceeeeCCCcCCCCCCHHHHHHhcCcccccCCccHhhhHHHHHHHHHhcCCCcEEEEecCCCCCccH
Confidence 999999999999999999999999999999999999998765 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCC-----------------CCchhhhhhhhHHHHhhcCcccCCCCCCCccccEEEEEEcCCCceecc
Q 001068 270 TAKIAMQYLAALGGG-----------------SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGA 332 (1166)
Q Consensus 270 ~~K~il~yLa~~~~~-----------------~~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~F~~~g~i~Ga 332 (1166)
++|+||+||++++++ +.|+++|+++||||||||||||++|||||||||||+|+||.+|.|+||
T Consensus 185 ~~k~~~~yla~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~npileaFGnAkT~rN~NSSRfgk~~~i~f~~~g~i~ga 264 (1184)
T 1i84_S 185 NTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGA 264 (1184)
T ss_dssp HHHHHHHHHHHHSSCCSCC------CTTCCCCCSHHHHHHHHHHHHTTTTEEEETTEEEEECSCEEEEEEECSSSCEEEE
T ss_pred HHHHHHHHHHHHhcCCCcccccccccccccccchHHHHHHHHHHHHHHhcCCcCCCCccccccceeEEEEECCCCCEeee
Confidence 999999999999865 367899999999999999999999999999999999999999999999
Q ss_pred eeeeeeccccccccccCCCCcchhHHHHhcCCCHHhHhhcCCCCccccccccCCCccCCCCcchHHHHHHHHHHHhhcCC
Q 001068 333 NIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHV 412 (1166)
Q Consensus 333 ~i~~yLLEKsRVv~q~~gERnfHIFYqLl~g~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~ 412 (1166)
+|.+|||||||||+|++||||||||||||+|+++++++.|+|.++.+|+||+++. ..++++||+++|..|+.||++|||
T Consensus 265 ~i~~ylLEksRv~~q~~~ErnfhiFYqll~g~~~~~~~~l~l~~~~~~~yl~~~~-~~~~~~~d~~~f~~~~~a~~~lg~ 343 (1184)
T 1i84_S 265 NIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGH-VPIPAQQDDEMFQETLEAMTIMGF 343 (1184)
T ss_dssp EEEECCCCCGGGSCCCTTCCCCTHHHHHHHHCCHHHHHHTTCCCTTSCSSCTTSS-CCCTTCCHHHHHHHHHHHHHHHTC
T ss_pred EEeEeecCCceeeeecCCCCchhhHHHHHcCCCHHHHHHcCCCChHhCCccCCCC-cCCCCCChHHHHHHHHHHHHhcee
Confidence 9999999999999999999999999999999999999999999999999999874 589999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCeeeEEeCCCCccccCChhHHHHHHHHhCCCHHHHHHhHccceeeeCCceEEecCCHHHHH
Q 001068 413 SKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQAT 492 (1166)
Q Consensus 413 s~~e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~i~~~~e~~~~~lt~~qA~ 492 (1166)
+++++..||+|||||||||||+|...++++.+.+.+.+.++.||.||||++++|.++||++++.+|+|.+++++|++||.
T Consensus 344 ~~~e~~~i~~ilaaiLhlGni~f~~~~~~~~~~~~~~~~~~~~a~lLg~~~~~l~~~l~~~~~~~~~e~~~~~~~~~~a~ 423 (1184)
T 1i84_S 344 TEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQAD 423 (1184)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCCBCCTTTSCCBCCCSHHHHHHHHHTTSCHHHHHHHHHSCCCCCTTSCCCCCCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhcCceeeccCCCcCcccCChHHHHHHHHHHCCCHHHHHHHhcCcEEEeCCceEecCCCHHHHH
Confidence 99999999999999999999999977666778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEEEeecccCcCCCCCChHHHHHhhhhhHHHHhHhhhhhHHHHHH
Q 001068 493 DTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEE 572 (1166)
Q Consensus 493 ~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~e 572 (1166)
++||||||+||++||+|||.+||.+|.........+||||||||||+|+.|||||||||||||+|||+||+|+|+.||+|
T Consensus 424 ~~rdalak~lY~~lF~wlv~~iN~~l~~~~~~~~~~IgvLDi~GFE~f~~NsfeQlciNy~nEkLq~~f~~~~f~~eq~e 503 (1184)
T 1i84_S 424 FAIEALAKAKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEE 503 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCC------CEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCcceEEEeecCCcCCCCcchHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999999999865334568999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcccccccC-CcHhHHHhhcCCC---ccccccccccCCCCCChHHHHHHHHHHhCCCCCcccCC----CCCeEEE
Q 001068 573 YIQDGIDWAKVDFE-DNKDCLNLFEKPL---GLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER----DKSFTVS 644 (1166)
Q Consensus 573 y~~EgI~~~~v~f~-dn~~~ldLie~p~---Gll~lLDee~~~p~~td~~f~~kl~~~~~~~~~f~~~~----~~~F~I~ 644 (1166)
|.+|||+|++|+|. ||++||||||+|. |||+||||||++|++||.+|++||+++|++|++|.+++ ..+|+|+
T Consensus 504 y~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~~~~~~~~~F~i~ 583 (1184)
T 1i84_S 504 YQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCIL 583 (1184)
T ss_dssp HHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHHHHHTTSCTTCCHHHHHHHHHHHTSSCTTEEECSSCTTTCEEEEE
T ss_pred HHhcCCCccccccCCCcHHHHHHHhCCCCCCCchhhhhhhhCCCCCChHHHHHHHHHHhCCCCCccCCCCCCCCCcEEEE
Confidence 99999999999995 9999999999977 99999999999999999999999999999999998765 4799999
Q ss_pred eecceeeecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCCC-cc-C---CCCCCCCccHHHHHH
Q 001068 645 HYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPL-YK-A---GGADSQKLSVATKFK 718 (1166)
Q Consensus 645 HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~s~~~l-~~lf~~~~~~~s~~~~~~~~-~~-~---~~~~~~~~tv~~~fk 718 (1166)
||||+|+|+++|||+||+|+|+++++.+|.+|++.+ ..+|.......+.....++. .. + ....+.+.||+++|+
T Consensus 584 Hyag~V~Y~~~gfl~kN~d~l~~~~~~ll~~s~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~f~ 663 (1184)
T 1i84_S 584 HYAGKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVDRIVGLDQMAKMTESSLPSASKTKKGMFRTVGQLYK 663 (1184)
T ss_dssp CSSCEEEEECTTHHHHHHCCCCHHHHHHHHTCSCHHHHHHHSCCTTCCCC---------------------CCCHHHHHH
T ss_pred CCCceEEeccCCchhhccCcccHHHHHHHHhCchHHHHHHhccccccccccccccccccccCccccccCCCCCcHHHHHH
Confidence 999999999999999999999999999999999875 56886532111100000000 00 0 112234689999999
Q ss_pred HHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHHHHHHhhhhccccccC
Q 001068 719 GQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS 798 (1166)
Q Consensus 719 ~qL~~Lm~~L~~t~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~ 798 (1166)
.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|+.||++|.|...+.
T Consensus 664 ~~l~~L~~~l~~t~phfvRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~ry~~L~~~~~~~ 743 (1184)
T 1i84_S 664 EQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYEILAANAIPK 743 (1184)
T ss_dssp HHHHHHHHHHTTSEEEECCEECCCSSCCSSCCCHHHHHHHHHHTTHHHHHHHHHHSCCEEEEHHHHHHHTTTTCTTTSCS
T ss_pred HHHHHHHHHHHhcCCCceeeeCCCCcCCCCcccHHHHHHHHhhcCchHHHHhHhhcCcccccHHHHHHHHHHhccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876663
Q ss_pred --CChHHHHHHHHHHcCcCCcceeecceeeeeeecccccccccccccccchhhhhhhhcccccchhhhccchhhhhHHHH
Q 001068 799 --QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSF 876 (1166)
Q Consensus 799 --~d~~~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R~~~l~aav~IQa~~Rg~~aRr~y~~lr~aai~IQs~ 876 (1166)
.|++..|..||..++++++.|+||+||||||++.+..||..|...+. ..++.||++
T Consensus 744 ~~~d~k~~~~~lL~~l~l~~~~~~iG~TKVF~r~g~l~~LE~~r~~~l~----------------------~~~~~iQ~~ 801 (1184)
T 1i84_S 744 GFMDGKQACILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEERDLKIT----------------------DVIIAFQAQ 801 (1184)
T ss_dssp SCCCHHHHHHHHHHTTTCCTTTCCBCSSEEEECTTHHHHHHHHHHHHTH----------------------HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCccceeEcCeEEEEechHHHHHHHHHHHHHH----------------------HHHHHHHHH
Confidence 48899999999999999999999999999999999999998875443 457899999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001068 877 IRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKL 912 (1166)
Q Consensus 877 ~RG~~aRr~y~~l~~r~~AAi~IQ~~~R~~~aRk~~ 912 (1166)
||||++|++|.+++.++.|+++||++||+|++|+.|
T Consensus 802 ~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~ 837 (1184)
T 1i84_S 802 CRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW 837 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999998887888999999999999997653
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=9.5e-204 Score=1879.01 Aligned_cols=750 Identities=43% Similarity=0.727 Sum_probs=681.7
Q ss_pred ccCcEEEEecCCCCEEeEEEEEe---cCCeeEEEcCCCcEEEEeC----CCccc-CCCCccCCccccccCCCCCchhHHH
Q 001068 117 KKKLQSWFQLPNGNWELGKILSI---SGTESVISLPEGKVLKVKS----ENLVS-ANPDILDGVDDLMQLSYLNEPSVLY 188 (1166)
Q Consensus 117 ~~~~~vw~~~~~~~~~~~~v~~~---~~~~~~v~~~~g~~~~v~~----~~~~~-~np~~~~~v~Dl~~L~~LnE~svL~ 188 (1166)
.++.+||+|+|+++|..|+|++. .++.++|.+++|++++|+. +++.| +||+.++++|||+.|++|||++|||
T Consensus 8 ~~g~~vwv~~~~~~~~~~~v~~~~~~~~~~~~v~~~~g~~~~v~~~~~~~~~~~~~np~~~~~~~Dl~~L~~l~E~svL~ 87 (795)
T 1w7j_A 8 TKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPPLRNPDILVGENDLTALSYLHEPAVLH 87 (795)
T ss_dssp CTTCEEEEEETTTEEEEEEESSCCCTTCSEEEEECSSSSEEEEECCTTTTCCCCBCCCGGGTTCSSSTTCSCCSHHHHHH
T ss_pred ccCCEEEEECCCCceEEEEEEeeccCCCceEEEEECCCCEEEEeccCcccccccccCcchhccccchhhhhcccHHHHHH
Confidence 34569999999999999999973 3556899999999999887 45777 5999999999999999999999999
Q ss_pred HHHHHh-hcCccccccCCceEEeCCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHcCceEEEEEcCCCCC
Q 001068 189 NLHYRY-KQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGA 265 (1166)
Q Consensus 189 ~L~~Ry-~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGa 265 (1166)
||+.|| .++.||||+|++|||||||+++|+|+++++..|+++... ||||||||+.||++|+++++||||||||||||
T Consensus 88 nL~~Ry~~~~~IYTy~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGA 167 (795)
T 1w7j_A 88 NLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGA 167 (795)
T ss_dssp HHHHHHHHHCCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTS
T ss_pred HHHHHHHhcccchhccCcceEEecCccccCcCCHHHHHHHcCCCccCCCccHhHHHHHHHHHhHhcCCCeEEEEeCCCCC
Confidence 999999 999999999999999999999999999999999998765 89999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhccCCC---CchhhhhhhhHHHHhhcCcccCCCCCCCccccEEEEEEcCCCceecceeeeeecccc
Q 001068 266 GKTETAKIAMQYLAALGGGS---GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKS 342 (1166)
Q Consensus 266 GKTe~~K~il~yLa~~~~~~---~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~F~~~g~i~Ga~i~~yLLEKs 342 (1166)
||||++|++|+||+++++++ .|+++|+++||||||||||||++|||||||||||+|+||.+|+|+||+|++||||||
T Consensus 168 GKTe~tK~i~~yla~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKS 247 (795)
T 1w7j_A 168 GKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKS 247 (795)
T ss_dssp SHHHHHHHHHHHHHHHTCCSSSSCHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCGG
T ss_pred CcchHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHHHhcCccCCCCCCccccceEEEEEECCCCCEeeeeceEEecccc
Confidence 99999999999999998764 799999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcchhHHHHhcCCCHHhHhhcCCCCccccccccCCCccCCCCcchHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 001068 343 RVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFA 422 (1166)
Q Consensus 343 RVv~q~~gERnfHIFYqLl~g~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~ 422 (1166)
|||+|++||||||||||||+|++++++++|+|.++.+|+||++++|..++++||+++|+.++.||++|||+++++..||+
T Consensus 248 RVv~q~~gERNfHIFYqLlag~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~Am~~lG~s~~e~~~i~~ 327 (795)
T 1w7j_A 248 RVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFR 327 (795)
T ss_dssp GGTCCCTTCCSBHHHHHHHHTTTSGGGGGGCCCCTTTSHHHHTTSCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred eEeccCCCCCchHhHHHHHcCCCHHHHHHccCCChHhCccccCCCCCcCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCeeeEEeCCCCccccCChhHHHHHHHHhCCCHHHHHHhHccceeeeCCceEEecCCHHHHHHHHHHHHHHH
Q 001068 423 MLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSI 502 (1166)
Q Consensus 423 iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~i~~~~e~~~~~lt~~qA~~~rdalak~L 502 (1166)
|||||||||||+|...+++......+.+.++.||.||||++++|.++||+|++.+++|.+++++|++||.++||||||+|
T Consensus 328 ilaaILhLGNi~F~~~~~~~~~v~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~l 407 (795)
T 1w7j_A 328 ILAGILHLGNVEFASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHI 407 (795)
T ss_dssp HHHHHHHHHTCCCEEEETTEEECCTTCHHHHHHHHHHTCCHHHHHHHHSEEEEECSSCEEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCceEeecCCcceeecCChHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceecCCCCHHHHHHHHHHHHHHH
Confidence 99999999999998766543333367889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcCCCCCCcceEEEeecccCcCCCCCChHHHHHhhhhhHHHHhHhhhhhHHHHHHHHhcCCcccc
Q 001068 503 YACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAK 582 (1166)
Q Consensus 503 Y~~LF~wiV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~ey~~EgI~~~~ 582 (1166)
|++||+|||.+||.+|.... ....+||||||||||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|+.
T Consensus 408 Y~rLF~wlV~~IN~~l~~~~-~~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~ 486 (795)
T 1w7j_A 408 YANLFNWIVDHVNKALHSTV-KQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTL 486 (795)
T ss_dssp HHHHHHHHHHHHHHHHCCSS-CCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHhhcCCc-cccceEEeeccCcccccCcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 99999999999999998653 34689999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcHhHHHhhcCCCccccccccccCCCCCChHHHHHHHHHHh-CCCCCcccCC--CCCeEEEeecceeeecccchhh
Q 001068 583 VDFEDNKDCLNLFEKPLGLLSLLDEESTFPNGTDLTFANKLKQHL-NSNPCFRGER--DKSFTVSHYAGEVIYDTTGFLE 659 (1166)
Q Consensus 583 v~f~dn~~~ldLie~p~Gll~lLDee~~~p~~td~~f~~kl~~~~-~~~~~f~~~~--~~~F~I~HyaG~V~Y~~~gfle 659 (1166)
|+|.||++||||||+|.|||+||||||++|++||.+|++||+++| ++|++|.+++ ..+|+|+||||+|+|+++|||+
T Consensus 487 i~f~DN~~~idLie~~~GIlslLDEec~~p~~tD~~f~~kl~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfle 566 (795)
T 1w7j_A 487 IDFYDNQPCINLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLE 566 (795)
T ss_dssp CCCCCCHHHHHHHHSTTSHHHHHHHHHTSTTCCHHHHHHHHHHHHTTTCTTEECCTTCSSEEEEECSSCEEEEECTTHHH
T ss_pred cCccccHHHHHHHHhcCCHHHhhhhhccCCCCChHHHHHHHHHHhhccCCccccCCCCCCceEEEecceEEEEechhHHh
Confidence 999999999999999999999999999999999999999999988 9999998876 6799999999999999999999
Q ss_pred hccCcCcHHHHHHHhhcC-cch-hHHhhccccccC-C--C---------CccCCCc--cCCCCCCCCccHHHHHHHHHHH
Q 001068 660 KNRDLLHLDSIELLSSCS-CHL-PQIFASNMLSQS-N--K---------PVVGPLY--KAGGADSQKLSVATKFKGQLFQ 723 (1166)
Q Consensus 660 KN~D~l~~d~~~ll~~s~-~~l-~~lf~~~~~~~s-~--~---------~~~~~~~--~~~~~~~~~~tv~~~fk~qL~~ 723 (1166)
||+|+|++|++++|++|+ +.+ ..+|.......+ . . ....+.+ .+++...+++||+++||.||+.
T Consensus 567 KNkD~l~~~~~~ll~~S~~~~~v~~lf~~~~~~~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~Tv~~~fk~sL~~ 646 (795)
T 1w7j_A 567 KNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHL 646 (795)
T ss_dssp HHHCCCCHHHHHHHHTCSSCSHHHHTTC---------------------------------------CCHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHhccccHHHHHHhccccccccccccccccccccccccccccccccccccCCCCCcHHHHHHHHHHH
Confidence 999999999999999999 875 567854321100 0 0 0000000 0012334568999999999999
Q ss_pred HHHHHhccCCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHHHHHHhhhhccccccCCChHH
Q 001068 724 LMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVASQDPLS 803 (1166)
Q Consensus 724 Lm~~L~~t~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~~d~~~ 803 (1166)
||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|+.||++|++......|+++
T Consensus 647 Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF~~RY~~L~~~~~~~~d~k~ 726 (795)
T 1w7j_A 647 LMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWTYQEFFSRYRVLMKQKDVLSDRKQ 726 (795)
T ss_dssp HHHHHHTSEEEEEEEECCCTTCCTTCCCHHHHHHHHHHTTHHHHHHHHHHSCCEEEEHHHHHHHHGGGSCGGGCCSCHHH
T ss_pred HHHHHhcCCCeEEEEeCCCCcCChhhcCcccccchhhhCChHHHHHHHHcCCCccccHHHHHHHHHHhCCcccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997665559999
Q ss_pred HHHHHHHHcCcCCcceeecceeeeeeecccccccccccccccchhhhhhhhcccccchhhhccchhhhhHHHHHHhHHHH
Q 001068 804 VSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIR 883 (1166)
Q Consensus 804 ~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R~~~l~aav~IQa~~Rg~~aRr~y~~lr~aai~IQs~~RG~~aR 883 (1166)
.|+.||..+++++++|++|+||||||++++..||+.|+..+. .+++.||++||||++|
T Consensus 727 ~~~~il~~~~~~~~~~~~G~TKVF~r~~~~~~LE~~r~~~l~----------------------~~~~~iQ~~~Rg~l~R 784 (795)
T 1w7j_A 727 TCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLR----------------------AACIRIQKTIRGWLMR 784 (795)
T ss_dssp HHHHHHHHHCCCGGGEEECSSEEEECTTHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCccceEEcCceEEEchhHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999886554 3355666666666666
Q ss_pred HHHHHH
Q 001068 884 KEYALV 889 (1166)
Q Consensus 884 r~y~~l 889 (1166)
++|.++
T Consensus 785 ~~~~~~ 790 (795)
T 1w7j_A 785 KKYMRM 790 (795)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
No 5
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=1.5e-202 Score=1859.99 Aligned_cols=754 Identities=39% Similarity=0.667 Sum_probs=667.7
Q ss_pred CCCCcCcccCCCCCCccccCCcccccccccccccCcEEEEecCCCCEEeEEEEEecCCeeEEEcCCCcEEEEeCCCcccC
Q 001068 85 GDEDLDSAASPLPSVSASHTDRRWSDTTSYAGKKKLQSWFQLPNGNWELGKILSISGTESVISLPEGKVLKVKSENLVSA 164 (1166)
Q Consensus 85 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~~~~~ 164 (1166)
+|.+++....|.|.+..+..+..=.++.+|..++ +||+|+|+++|+.|+|++..+++++|.+++|++++|+.+++.|+
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~vWv~d~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~v~~~ 79 (783)
T 4db1_A 2 GDSEMAVFGAAAPYLRKSEKERLEAQTRPFDLKK--DVFVPDDKQEFVKAKIVSREGGKVTAETEYGKTVTVKEDQVMQQ 79 (783)
T ss_dssp TTGGGGGGGGGGGGTCCCHHHHHHHHHSCCCTTT--EEEEECSSSSEEEEEEEEECSSEEEEEETTTEEEEEEGGGCEEC
T ss_pred CCcchhhcCchhhHhccCHHHHHHhhccCCcCCC--EEEEECCCCCEEEEEEEEecCCEEEEEECCCCEEeCCHHHcccC
Confidence 4678888888889998866555556788888887 89999999999999999999999999999999999999999999
Q ss_pred CCCccCCccccccCCCCCchhHHHHHHHHhhcCccccccCCceEEeCCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHH
Q 001068 165 NPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITD 242 (1166)
Q Consensus 165 np~~~~~v~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~ 242 (1166)
||+.++++|||+.|++|||++|||||+.||.+++||||+|+||||||||+++|||+++++..|+++... ||||||||+
T Consensus 80 np~~~~~~eDl~~L~~LnE~svL~nL~~Ry~~~~IYTy~G~iLvavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~ 159 (783)
T 4db1_A 80 NPPKFDKIEDMAMLTFLHEPAVLYNLKDRYGSWMIYTYSGLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISD 159 (783)
T ss_dssp CCGGGTTCSBGGGCSCCSHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHH
T ss_pred CCCccCCcchhhccccccHHHHHHHHHHHhcCCceEEecCceeEecCCCccCCCCCHHHHHHhcCCCcCCCCchhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988764 899999999
Q ss_pred HHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhccCC------------CCchhhhhhhhHHHHhhcCcccCCCC
Q 001068 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGG------------SGIEYEILKTNPILEAFGNAKTSRND 310 (1166)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~------------~~ie~~il~snpiLEAFGNAkT~~N~ 310 (1166)
.||+.|+++++||||||||||||||||++|+||+|||+++++ +.++++|+++||||||||||||+|||
T Consensus 160 ~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~im~yla~v~~~~~~~~~~~~~~~~~ve~~il~snpiLEAFGNAkT~rNd 239 (783)
T 4db1_A 160 NAYQYMLTDRENQSILITGESGAGKTVNTKRVIQYFAVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKTVRND 239 (783)
T ss_dssp HHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHSBCCCC-------CCSCHHHHHHHHHHHHHHHHEECCSSCT
T ss_pred HHHHHHHhhCCCceEEEeCCCCCCCchHHHHHHHhhhhhccCCCccccccccccccHHHHHHHhHHHHHhccCcccCCCC
Confidence 999999999999999999999999999999999999998753 35899999999999999999999999
Q ss_pred CCCccccEEEEEEcCCCceecceeeeeeccccccccccCCCCcchhHHHHhcCCCHHhHhhcCCC-CccccccccCCCcc
Q 001068 311 NSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLM-SAKEYKYLRQSSCY 389 (1166)
Q Consensus 311 NSSRfGk~i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERnfHIFYqLl~g~~~~~r~~l~L~-~~~~y~yL~~~~~~ 389 (1166)
|||||||||+|+||.+|+|+||+|++|||||||||+|++||||||||||||+|+++++++.|+|. ++.+|+||+++ +.
T Consensus 240 NSSRFGK~i~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERnfHIFYqLlaG~~~~~~~~l~L~~~~~~y~yl~~g-~~ 318 (783)
T 4db1_A 240 NSSRFGKFIRIHFGATGKLASADIETYLLEKSRVIFQLKAERDYHIFYQILSNKKPELLDMLLITNNPYDYAFISQG-ET 318 (783)
T ss_dssp TEECSEEEEEEEECTTSBEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHHTCSSHHHHHHTTCCSCGGGCGGGCSS-CC
T ss_pred CCCccceeEEEEECCCCCEeeeEEEEeecccceeeccCCCCCcchhHHHHHcCCCHHHHHHhccCCCHHHCccccCC-Cc
Confidence 99999999999999999999999999999999999999999999999999999999999999994 79999999996 46
Q ss_pred CCCCcchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeeEEeCCCCccccCChhHHHHHHHHhCCCHHHHHHh
Q 001068 390 SINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLA 469 (1166)
Q Consensus 390 ~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aA~LLgv~~~~L~~~ 469 (1166)
.++++||+++|+.++.||++|||+++++..||+|||||||||||+|...++++.+++.+.+.++.||.||||++++|.++
T Consensus 319 ~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~a 398 (783)
T 4db1_A 319 TVASIDDAEELMATDNAFDVLGFTSEEKNSMYKLTGAIMHFGNMKFKLKQREEQAEPDGTEEADKSAYLMGLNSADLLKG 398 (783)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEECTTSSCEEESCCHHHHHHHHHTTCCHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccceeeccCCCcccccCChHHHHHHHHHhCCCHHHHHHh
Confidence 89999999999999999999999999999999999999999999999877777888999999999999999999999999
Q ss_pred HccceeeeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEEEeecccCcCCCCCChHHHH
Q 001068 470 LSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFC 549 (1166)
Q Consensus 470 L~~~~i~~~~e~~~~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLc 549 (1166)
||+|++.+|+|.+++++|++||.++||||||+||++||+|||.+||.+|... .....+||||||||||+|+.|||||||
T Consensus 399 L~~~~i~~~~e~v~~~~~~~qA~~~rdalAK~lY~rLF~wlV~~IN~~l~~~-~~~~~~IGvLDI~GFE~f~~NsFEQlC 477 (783)
T 4db1_A 399 LCHPRVKVGNEYVTKGQNVQQVIYATGALAKAVYERMFNWMVTRINATLETK-QPRQYFIGVLDIAGFEIFDFNSFEQLC 477 (783)
T ss_dssp HHSCC------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CCCSEEEEEEECCCCCCCSSCCHHHHH
T ss_pred hcceEEEeCCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCceEEEeccccccccccCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999864 344689999999999999999999999
Q ss_pred HhhhhhHHHHhHhhhhhHHHHHHHHhcCCcccccccC-CcHhHHHhhcCCCccccccccccCCCCCChHHHHHHHHHHh-
Q 001068 550 INYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFE-DNKDCLNLFEKPLGLLSLLDEESTFPNGTDLTFANKLKQHL- 627 (1166)
Q Consensus 550 INyaNEkLQ~~f~~~~F~~eq~ey~~EgI~~~~v~f~-dn~~~ldLie~p~Gll~lLDee~~~p~~td~~f~~kl~~~~- 627 (1166)
||||||+|||+||+|+|+.||+||.+|||+|+.|+|. ||++||||||+|.|||+||||||++|++||.+|++||++.|
T Consensus 478 INyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiekp~Gil~lLDEec~~p~~tD~tf~~kl~~~~~ 557 (783)
T 4db1_A 478 INFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEKPMGIMSILEEECMFPKATDMTFKAKLFDNHL 557 (783)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHSTTSHHHHHCC-TTCTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhCCCchHhhhhHHhcCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999995 99999999999999999999999999999999999998765
Q ss_pred CCCCCcccCC------CCCeEEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCCC
Q 001068 628 NSNPCFRGER------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPL 700 (1166)
Q Consensus 628 ~~~~~f~~~~------~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~s~~~l-~~lf~~~~~~~s~~~~~~~~ 700 (1166)
++|++|.+++ ..+|+|+||||+|+|+++|||+||+|+|++|++++|++|++.+ ..+|.......+ +. +..
T Consensus 558 ~~~~~f~~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~lf~~~~~~~~--~~-~~~ 634 (783)
T 4db1_A 558 GKSANFQKPRNIKGKPEAHFSLIHYAGIVDYNIIGWLQKNKDPLNETVVGLYQKSSLKLLSTLFANYAGADA--PI-EKG 634 (783)
T ss_dssp TTCTTEECCCC----C-CCEEEEETTEEEEECCTTHHHHHHCCCCHHHHHHHHTCSSHHHHHHHHSCC------------
T ss_pred CCCCCccCCCCCCCCCCCCeEEeCcCCceEEeCcChhhhccccccHHHHHHHHHCccHHHHHHhhccccccc--cc-cCc
Confidence 8899997664 3689999999999999999999999999999999999999875 678865431111 00 000
Q ss_pred ccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccC
Q 001068 701 YKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMS 780 (1166)
Q Consensus 701 ~~~~~~~~~~~tv~~~fk~qL~~Lm~~L~~t~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~ 780 (1166)
..+....+.++||+++||.||+.||++|++|+||||||||||+.|.|+.||..+|++||||+||||+|||+|+|||+|++
T Consensus 635 ~~~~~~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~ 714 (783)
T 4db1_A 635 KGKAKKGSSFQTVSALHRENLNKLMTNLRSTHPHFVRCIIPNETKSPGVMDNPLVMHQLRCNGVLEGIRICRKGFPNRIL 714 (783)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCTTCCCHHHHHHHHHHSSHHHHHHHHHTSCCEEEE
T ss_pred cCCCCcCCCCccHHHHHHHHHHHHHHHHHccCCEEEEeeCCCcccCCCcccchhhheeccccChHhheeehhcCCCccCc
Confidence 00011123458999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhccccccC---CChHHHHHHHHHHcCcCCcceeecceeeeeeeccccccccccccccc
Q 001068 781 HQKFARRYGFLLLESVAS---QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLH 845 (1166)
Q Consensus 781 ~~eF~~RY~~L~~~~~~~---~d~~~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R~~~l~ 845 (1166)
|.+|++||++|+|...+. .|+++.|+.||..++++++.|++|+||||||++++..||+.|+..+.
T Consensus 715 f~eF~~RY~~L~~~~~~~~~~~d~k~~~~~ll~~~~~~~~~~~~G~TKVFlr~g~~~~LE~~R~~~l~ 782 (783)
T 4db1_A 715 YGDFRQRYRILNPAAIPEGQFIDSRKGAEKLLSSLDIDHNQYKFGHTKVFFKAGLLGLLEEMRDERLS 782 (783)
T ss_dssp C--------------------------CCHHHHSSSSCGGGEEECSSEEEECTTHHHHHHHHC-----
T ss_pred HHHHHHHHHHhCccccCCCCCCCHHHHHHHHHHhCCCCcCeEEECCEEEEECcCHHHHHHHHHHHHhc
Confidence 999999999999987653 47899999999999999999999999999999999999999987653
No 6
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=1.4e-203 Score=1915.16 Aligned_cols=797 Identities=34% Similarity=0.573 Sum_probs=708.1
Q ss_pred cCcEEEEecCCCCEEeEEEEEecCCeeEEEcC--CCcEEEEeCCCcccCCCCccCCccccccCCCCCchhHHHHHHHHhh
Q 001068 118 KKLQSWFQLPNGNWELGKILSISGTESVISLP--EGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLHYRYK 195 (1166)
Q Consensus 118 ~~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~--~g~~~~v~~~~~~~~np~~~~~v~Dl~~L~~LnE~svL~~L~~Ry~ 195 (1166)
+|.+||+|||+++|.+|+|++..++.++|.+. +|++++++.+++.|+||+.++++|||+.|++|||++|||||+.||.
T Consensus 3 ~G~~VWv~d~~~~~~~a~v~~~~~~~~~v~~~~~~g~~~~~~~~~v~~~n~~~~~~veDl~~L~~LnE~svL~nL~~Ry~ 82 (1052)
T 4anj_A 3 DGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYS 82 (1052)
T ss_dssp -CCCEEEEETTTEEEEEEEEEECSSEEEEEEC----CCEEEEGGGCEECCSCSSCCCSBGGGSSSCSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCEEEEEEEEEcCCcEEEEEeCCCCcEEEecHHHcCCCCCCccCCCcccccCCCCCHHHHHHHHHHHHc
Confidence 46789999999999999999999999888754 6889999999999999999999999999999999999999999999
Q ss_pred cCccccccCCceEEeCCCCCCC-CCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHH
Q 001068 196 QDMIYTKAGPVLVAINPFKKVP-LYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAK 272 (1166)
Q Consensus 196 ~~~iYT~~G~iLiavNP~k~l~-iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K 272 (1166)
+++||||+|+||||||||+.+| ||+++++..|+++... ||||||||+.||+.|+++++||||||||||||||||++|
T Consensus 83 ~~~IYTy~G~iLIaVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK 162 (1052)
T 4anj_A 83 KDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTK 162 (1052)
T ss_dssp TTCCEEEETTEEEEECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHH
T ss_pred CCCcEEeECCEEEEECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHH
Confidence 9999999999999999999998 9999999999998765 899999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCC-CchhhhhhhhHHHHhhcCcccCCCCCCCccccEEEEEEcCCCceecceeeeeeccccccccccCCC
Q 001068 273 IAMQYLAALGGGS-GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGE 351 (1166)
Q Consensus 273 ~il~yLa~~~~~~-~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gE 351 (1166)
+||+|||++++++ .++++|+++||||||||||||++|||||||||||+|+||.+|+|+||+|++|||||||||.|++||
T Consensus 163 ~im~yLa~~~~~~~~ie~~Il~snpiLEAFGNAKT~rNdNSSRFGK~iel~F~~~G~i~Ga~I~~YLLEKSRVv~q~~gE 242 (1052)
T 4anj_A 163 FVLRYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEE 242 (1052)
T ss_dssp HHHHHHHHHHCC---CTTHHHHTHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCSGGGTCCCTTC
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHhccCCCCCCCCCcCCceeEEEEEECCCCCEEEEEEeccccccCceeecCCCC
Confidence 9999999987654 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHHhcCCCHHhHhhcCCCCccccccccCC--------------------------CccCCCCcchHHHHHHHHH
Q 001068 352 RAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQS--------------------------SCYSINGVDDAEQFRIVVE 405 (1166)
Q Consensus 352 RnfHIFYqLl~g~~~~~r~~l~L~~~~~y~yL~~~--------------------------~~~~~~~~dD~~~f~~~~~ 405 (1166)
||||||||||+|++++++++|+|.++++|+||+++ +|..++++||+++|..++.
T Consensus 243 RNfHIFYqLlaGa~~~~r~~l~L~~~~~y~yL~qg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dD~~~f~~~~~ 322 (1052)
T 4anj_A 243 RNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCT 322 (1052)
T ss_dssp CSBHHHHHHHHHCCHHHHHHHTCCCGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHHHCCBCCSSCCHHHHHHHHHH
T ss_pred CCcccHHHHhcCCCHHHHHHcCCCChHhCchhcCCCccccccccchhhhcccccchhhccCCCccCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999985 4667899999999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHhcCeeeEEeCCCC---ccccCChhHHHHHHHHhCCCHHHHHHhHccceee-----e
Q 001068 406 ALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVIDNEN---HVEPVADEGLITVAKLIGCDIGELKLALSTRKMR-----V 477 (1166)
Q Consensus 406 Al~~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~~~---~~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~i~-----~ 477 (1166)
||++|||+++++..||+|||||||||||+|...++.+ .+.+.+.+.++.||.||||++++|.++||++++. +
T Consensus 323 Am~~lGfs~~e~~~I~~iLAaILhLGNi~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aLt~r~~~~~~~~~ 402 (1052)
T 4anj_A 323 AMKKIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGA 402 (1052)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHTCCEEC-------CEECGGGHHHHHHHHHHTTCCHHHHHHHHHEEC--------
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCCCcccccCChHHHHHHHHHhCCCHHHHHHHHhhceeeeccccc
Confidence 9999999999999999999999999999998654322 3456667889999999999999999999998874 6
Q ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEEEeecccCcCCCCCChHHHHHhhhhhHH
Q 001068 478 GNDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERL 557 (1166)
Q Consensus 478 ~~e~~~~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkL 557 (1166)
++|.++++++++||.++||||||+||++||+|||++||.+|... ....+||||||||||+|+.|||||||||||||+|
T Consensus 403 ~~e~i~~~l~~~qA~~~rDaLAK~LY~rLF~wiV~~IN~~l~~~--~~~~~IGILDI~GFE~f~~NsFEQLCINyaNEkL 480 (1052)
T 4anj_A 403 KGTVIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFE--TSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKL 480 (1052)
T ss_dssp -----CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS--CCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHH
T ss_pred CceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc--cccceEEEEecCCCcccccCcHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999864 3467999999999999999999999999999999
Q ss_pred HHhHhhhhhHHHHHHHHhcCCcccccccCCcHhHHHhhcC-CCccccccccccCCCCCChHHHHHHHHHHhCCCCCcccC
Q 001068 558 QQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK-PLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGE 636 (1166)
Q Consensus 558 Q~~f~~~~F~~eq~ey~~EgI~~~~v~f~dn~~~ldLie~-p~Gll~lLDee~~~p~~td~~f~~kl~~~~~~~~~f~~~ 636 (1166)
||+||+|+|+.||+||.+|||+|+.|+|.||++||||||+ |.|||+||||||++|++||.+|++||++++++|++|..+
T Consensus 481 Qq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDEe~~~p~~tD~~f~~kl~~~~~~~~~~~~~ 560 (1052)
T 4anj_A 481 QQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIP 560 (1052)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHHHHHTTTTCTTEECG
T ss_pred HHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHHHhcCCCCcHHHHHHHHHHHhccCccccCC
Confidence 9999999999999999999999999999999999999997 899999999999999999999999999999999988644
Q ss_pred C------------CCCeEEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccC
Q 001068 637 R------------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKA 703 (1166)
Q Consensus 637 ~------------~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~s~~~l-~~lf~~~~~~~s~~~~~~~~~~~ 703 (1166)
+ +..|+|+||||+|+|+++|||+||+|+|++|++++|++|++++ ..+|......... .+.
T Consensus 561 ~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~~~~i~~Lf~~~~~~~~~-------~~~ 633 (1052)
T 4anj_A 561 RKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESSTNNNKD-------TKQ 633 (1052)
T ss_dssp GGCSCSTTTTCCTTSEEEEEETTEEEEEECTTHHHHHBCCCCHHHHHHHHTCSCHHHHHTTCC-----------------
T ss_pred cccccccccccCCCCCeEEEcCCccEEEecCChhhhccccccHHHHHHHHhCCcHHHHHhhhcccccccc-------ccC
Confidence 2 2469999999999999999999999999999999999999875 5678543211110 011
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHH
Q 001068 704 GGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQK 783 (1166)
Q Consensus 704 ~~~~~~~~tv~~~fk~qL~~Lm~~L~~t~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~e 783 (1166)
++....+.||+++|+.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+
T Consensus 634 ~~~~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvLE~irI~r~Gyp~R~~f~e 713 (1052)
T 4anj_A 634 KAGKLSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHE 713 (1052)
T ss_dssp ------CCBHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCSSCCCHHHHHHHHHHHTHHHHHHHTTTCCCEEEEHHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHcCcCCEEEEEECCCccCCCCcCCHHHHHHHHHHhhHHHHHHHHhcCCCCcCcHHH
Confidence 11233468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccccccCCChHHHHHHHHHHcCcCCcceeecceeeeeeecccccccccccccccchhhhhhhhcccccchhh
Q 001068 784 FARRYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQARLCL 863 (1166)
Q Consensus 784 F~~RY~~L~~~~~~~~d~~~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R~~~l~aav~IQa~~Rg~~aRr~y 863 (1166)
|++||++|+|...+..|+++.|+.||..+++++++|++|+||||||++++..||+.|...+..++.+|+.+|||++|++|
T Consensus 714 F~~RY~~L~~~~~~~~d~k~~~~~iL~~l~l~~~~y~iG~TKVFlr~~~~~~LE~~r~~~~~~~~~~iq~~r~~l~r~~~ 793 (1052)
T 4anj_A 714 LYNMYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRVNHWLICSRW 793 (1052)
T ss_dssp HHHHHHTTSCSSGGGSCHHHHHHHHHHHTSCCGGGEEECSSEEEECTTCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccccCCCHHHHHHHHHHHcCcCcccEEecCCEEeeCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888889999999999999999999999999999999999999999999888776666678999999999
Q ss_pred hccchhhhhHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHH
Q 001068 864 KELRRGIVALQSFIRGEKIRKEYALVLQ-RHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQS 924 (1166)
Q Consensus 864 ~~lr~aai~IQs~~RG~~aRr~y~~l~~-r~~AAi~IQ~~~R~~~aRk~~~~~r~aai~IQs 924 (1166)
++++.+++.||.++|++..|+.+..... ...++.-+++.||++..|++|...+ +...+|.
T Consensus 794 ~k~~~~a~~i~~~~r~~~~r~~~~~~w~~l~~~v~pll~~~~~~~~~r~~~~~~-~~~~~~~ 854 (1052)
T 4anj_A 794 KKVQWCSLSVIKLKNKIKYRAEAVSKGEELFTGVVPILVELDGDVNGHKFSVSG-EGEGDAT 854 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCEEEEEEEEEEETTEEEEEEE-EEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhhhhhHHHHHHHHHhhhhhccC-Cccccch
Confidence 9999999999999998876665422110 1112333444556666777665433 3344443
No 7
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=2.3e-198 Score=1879.78 Aligned_cols=788 Identities=38% Similarity=0.609 Sum_probs=721.0
Q ss_pred ccccccCcEEEEecCCCCEEeEEEEEecCCeeEEEcCC-CcEEEEeCCCcccCCCCccCCccccccCCCCCchhHHHHHH
Q 001068 113 SYAGKKKLQSWFQLPNGNWELGKILSISGTESVISLPE-GKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLH 191 (1166)
Q Consensus 113 ~~~~~~~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~-g~~~~v~~~~~~~~np~~~~~v~Dl~~L~~LnE~svL~~L~ 191 (1166)
+|..++ +||+++|+++|..|+|++..+++++|.+.+ |++++|+.+++.|+||+.++++|||+.|++|||++|||||+
T Consensus 4 ~~~~~~--~vwv~~~~~~~~~~~v~~~~~~~~~v~~~~~~~~~~v~~~~~~~~np~~~~~~~Dl~~L~~l~e~~vl~nL~ 81 (995)
T 2ycu_A 4 EWTARR--LVWVPSELHGFEAAALRDEGEEEAEVELAESGRRLRLPRDQIQRMNPPKFSKAEDMAELTCLNEASVLHNLR 81 (995)
T ss_dssp CCGGGC--EEEEEETTTEEEEEEEEEECSSEEEEEETTTCCEEEEEGGGCEECCCGGGTTCSBGGGCSSCSHHHHHHHHH
T ss_pred cccCCC--eEEEECCCCceEEEEEEEecCCeEEEEECCCCeEEEeeHHHcccCCCccccccchhhhhccccHHHHHHHHH
Confidence 455554 899999999999999999999999999864 56999999999999999999999999999999999999999
Q ss_pred HHhhcCccccccCCceEEeCCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhH
Q 001068 192 YRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTE 269 (1166)
Q Consensus 192 ~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe 269 (1166)
.||..+.||||+|+||||||||+++|||+++++..|+++... ||||||||+.||++|+++++||||||||||||||||
T Consensus 82 ~Ry~~~~iYTy~G~ilvavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe 161 (995)
T 2ycu_A 82 ERYYSGLIYTYSGLFCVVINPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTE 161 (995)
T ss_dssp HHHHTTCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHH
T ss_pred HHHhcCceeeecCceeeeeCCccccCCCCHHHHHHhcCCccCCCCchHHHHhHHHHHHHHhcCCCcEEEecCCCCCCchh
Confidence 999999999999999999999999999999999999998765 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCC----------CCchhhhhhhhHHHHhhcCcccCCCCCCCccccEEEEEEcCCCceecceeeeeec
Q 001068 270 TAKIAMQYLAALGGG----------SGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLL 339 (1166)
Q Consensus 270 ~~K~il~yLa~~~~~----------~~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~F~~~g~i~Ga~i~~yLL 339 (1166)
++|+||+||++++++ +.|+++|+++||||||||||||++|||||||||||+|+||.+|.|+||+|.+|||
T Consensus 162 ~~K~i~~yla~~~~~~~~~~~~~~~~~ie~~il~~npiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLL 241 (995)
T 2ycu_A 162 NTKKVIQYLAHVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGANIETYLL 241 (995)
T ss_dssp HHHHHHHHHHHHSCCSSSCSSSCCCC-CCSTTTSHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECC
T ss_pred hHHHHHHHHHHhcccCCccccccccccHHHHHHHHHHHHHHhcCccCCCCCCCCccceEEEEEECCCCCEeeeEEEEEec
Confidence 999999999999864 3589999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCcchhHHHHhcCCCHHhHhhcCCCCccccccccCCCccCCCCcchHHHHHHHHHHHhhcCCCHHHHHH
Q 001068 340 EKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQES 419 (1166)
Q Consensus 340 EKsRVv~q~~gERnfHIFYqLl~g~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~ 419 (1166)
||||||.|++||||||||||||+|+++++++.|+|.++.+|+||++++ ..+++ ||+++|..++.||++|||+++++..
T Consensus 242 EksRvv~q~~~ERnfHIFYqll~g~~~~~~~~l~L~~~~~y~yl~~~~-~~~~~-dD~~~f~~~~~A~~~lg~~~~e~~~ 319 (995)
T 2ycu_A 242 EKSRAIRQAKDECSFHIFYQLLGGAGEQLKADLLLEPCSHYRFLTNGP-SSSPG-QERELFQETLESLRVLGFSHEEIIS 319 (995)
T ss_dssp CGGGGTCCCTTCCCBHHHHHHHHHCCHHHHHHTTCCCGGGCTTSTTCS-CSSTT-THHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cCCeeeccCCCCCcchhHHHHHcCCCHHHHHHcCCCChHHcccccCCc-cccCC-cHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999987 57889 9999999999999999999999999
Q ss_pred HHHHHHHHHHhcCeeeEEeCCCCccccCChhHHHHHHHHhCCCHHHHHHhHccceeeeCCceEEecCCHHHHHHHHHHHH
Q 001068 420 VFAMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALA 499 (1166)
Q Consensus 420 i~~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~i~~~~e~~~~~lt~~qA~~~rdala 499 (1166)
||+|||||||||||+|...++++.+.+.+.+.++.||.||||++++|.++||++++.+|+|.+++++|++||.++|||||
T Consensus 320 i~~ilaaILhlGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdala 399 (995)
T 2ycu_A 320 MLRMVSAVLQFGNIALKRERNTDQATMPDNTAAQKLCRLLGLGVTDFSRALLTPRIKVGRDYVQKAQTKEQADFALEALA 399 (995)
T ss_dssp HHHHHHHHHHGGGCCCEECSSSCCEECSCCHHHHHHHHHTTCCHHHHHHHHHSCEEESSSSEEECCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccceEeecCCCcccccCChHHHHHHHHHHCCCHHHHHHHhcCcEEEcCCceecCCCCHHHHHHHHHHHH
Confidence 99999999999999999877667788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCcceEEEeecccCcCCCCCChHHHHHhhhhhHHHHhHhhhhhHHHHHHHHhcCCc
Q 001068 500 KSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGID 579 (1166)
Q Consensus 500 k~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~ey~~EgI~ 579 (1166)
|+||++||+|||.+||.+|.........+||||||||||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+
T Consensus 400 k~lY~~LF~wlV~~iN~~l~~~~~~~~~~IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~ 479 (995)
T 2ycu_A 400 KATYERLFRWLVLRLNRALDRSPRQGASFLGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIP 479 (995)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCSCCCSEEEEEEECCCBCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccceEEEeccccccccccchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCC
Confidence 99999999999999999998654325689999999999999999999999999999999999999999999999999999
Q ss_pred cccccc-CCcHhHHHhhcC---CCccccccccccCCCCCChHHHHHHHHHHhCCCCCcccCC----CCCeEEEeecceee
Q 001068 580 WAKVDF-EDNKDCLNLFEK---PLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER----DKSFTVSHYAGEVI 651 (1166)
Q Consensus 580 ~~~v~f-~dn~~~ldLie~---p~Gll~lLDee~~~p~~td~~f~~kl~~~~~~~~~f~~~~----~~~F~I~HyaG~V~ 651 (1166)
|+.|+| .||++||||||+ |.|||+||||||++|++||.+|++||+..|++|++|.+++ ..+|+|+||||+|+
T Consensus 480 w~~i~f~~dn~~~idlie~~~~p~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~~F~i~HyAG~V~ 559 (995)
T 2ycu_A 480 WTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFPKATDKSFVEKVAQEQGGHPKFQRPRHLRDQADFSVLHYAGKVD 559 (995)
T ss_dssp CCCCCCSCCCHHHHHHHHCCSSSCCHHHHHHHSSSSTTCCHHHHHHHHHHHHTTSTTEECCCTTTCCSSEEEEETTEEEE
T ss_pred ccccccccChHHHHHHHhccCCCCchhhhhHHHhcCCCCchHHHHHHHHHhcCCCCCcccCCccCCCCeeEEECCCCCcc
Confidence 999999 599999999998 8999999999999999999999999999899999998765 47999999999999
Q ss_pred ecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccC--CCc-cCCCCCCCCccHHHHHHHHHHHHHHH
Q 001068 652 YDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVG--PLY-KAGGADSQKLSVATKFKGQLFQLMQR 727 (1166)
Q Consensus 652 Y~~~gfleKN~D~l~~d~~~ll~~s~~~l-~~lf~~~~~~~s~~~~~~--~~~-~~~~~~~~~~tv~~~fk~qL~~Lm~~ 727 (1166)
|+++|||+||+|+|++|++++|++|++.+ ..+|.......+.....+ +.. .+....+.+.||+++||.||+.||++
T Consensus 560 Y~~~gfleKN~D~l~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~tv~~~fk~sL~~Lm~~ 639 (995)
T 2ycu_A 560 YKANEWLMKNMDPLNDNVAALLHQSTDRLTAEIWKDVEGIVGLEQVSSLGDGPPGGRPRRGMFRTVGQLYKESLSRLMAT 639 (995)
T ss_dssp ECCTTHHHHHHCCCCHHHHHHHHTCSSHHHHHHTSSCCSSCSCCC-------------CCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccccHHHHHHHHhCcHHHHHHHhhcccccccccccccccccccccCcCCCCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999875 568865321000000000 000 00112335689999999999999999
Q ss_pred HhccCCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHHHHHHhhhhccccccC--CChHHHH
Q 001068 728 LESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVS 805 (1166)
Q Consensus 728 L~~t~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~--~d~~~~~ 805 (1166)
|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|+.||++|.+...+. .|+++.|
T Consensus 640 L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~r~~~~~F~~RY~~L~~~~~~~~~~d~~~~~ 719 (995)
T 2ycu_A 640 LSNTNPSFVRCIVPNHEKRAGKLEPRLVLDQLRCNGVLEGIRICRQGFPNRILFQEFRQRYEILTPNAIPKGFMDGKQAC 719 (995)
T ss_dssp HHTSEEEEEEEECCCSSCCTTCCCTTTHHHHHHHHTHHHHHHHHHHSCCEEEEHHHHHHHHGGGSTTTSCSCCCCSCCSC
T ss_pred HHhcCcceeeeecCCccccccccCHHHHHHHhcccchHHHHHHHHhcCCccccHHHHHHHHHHhCcccccccCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987653 4788899
Q ss_pred HHHHHHcCcCCcceeecceeeeeeecccccccccccccccc------hhhhhhhhcccccchhhhccchhhhhHHHHHHh
Q 001068 806 VAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHG------ILRVQSCFRGHQARLCLKELRRGIVALQSFIRG 879 (1166)
Q Consensus 806 ~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R~~~l~a------av~IQa~~Rg~~aRr~y~~lr~aai~IQs~~RG 879 (1166)
+.||..++++++.|++|+||||||++++..||+.|+..+.. +..++.|+|+..++..+++.+.+++.||++||+
T Consensus 720 ~~ll~~~~~~~~~~~~G~tkVF~r~~~~~~LE~~R~~~l~~~eYe~~a~~Ll~WIr~k~a~l~~r~~~~sl~~IQ~~ir~ 799 (995)
T 2ycu_A 720 EKMIQALELDPNLYRVGQSKIFFRAGVLAQLEEERASEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNA 799 (995)
T ss_dssp CCSCCCSSEEESSEEEESSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCChhheeecceEEEEecchhhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999988763 345788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001068 880 EKIRKEYALVLQRHRAAVVIQRQIKS 905 (1166)
Q Consensus 880 ~~aRr~y~~l~~r~~AAi~IQ~~~R~ 905 (1166)
+.+++...+... ......||..++.
T Consensus 800 f~~fr~~ekpp~-~~ek~rLeal~~~ 824 (995)
T 2ycu_A 800 HKEYKKTEKPPK-GQEVSELEAIYNS 824 (995)
T ss_dssp HTTHHHHTHHHH-HHHHHHHCSSSCC
T ss_pred HHHHHHHhccch-HHHHHHHHHHHHH
Confidence 988888754331 1223556666653
No 8
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=7.8e-197 Score=1862.51 Aligned_cols=760 Identities=42% Similarity=0.704 Sum_probs=699.2
Q ss_pred ccccccCcEEE---EecCCCCEEeEEEEEecCCeeEEEcCCCcEEEEeCCCcccCCCCccCCccccccCCCCCchhHHHH
Q 001068 113 SYAGKKKLQSW---FQLPNGNWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYN 189 (1166)
Q Consensus 113 ~~~~~~~~~vw---~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~~~~~np~~~~~v~Dl~~L~~LnE~svL~~ 189 (1166)
+|..+ .+|| +++++++|..|+|++..+++++|.+++|++++|+.+++.|+||+.+++++||+.|++|||++||||
T Consensus 28 ~~~~~--~~vW~~~v~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~~~~~np~~~~~~~Dl~~L~~l~e~~vl~n 105 (1010)
T 1g8x_A 28 TVSDK--RYIWYNPDPDERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHN 105 (1010)
T ss_dssp CCCCC--CEEEECSSTTCTTCCEEEEEEEEETTEEEEECSSSSEEEEETTTCCBCCCGGGTTCSBGGGCSSCCHHHHHHH
T ss_pred chhcC--CceeCccCcCcccCeeEEEEEEecCCeEEEEecCCcEEEecHHhccccCcchhcchhhhhhhhcccHHHHHHH
Confidence 45544 4899 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCccccccCCceEEeCCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHcCceEEEEEcCCCCCCh
Q 001068 190 LHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGK 267 (1166)
Q Consensus 190 L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGK 267 (1166)
|+.||..+.||||+|++|||||||+++|||+++++..|+++... ||||||||+.||++|+++++||||||||||||||
T Consensus 106 L~~Ry~~~~iYTy~G~ilvavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGK 185 (1010)
T 1g8x_A 106 LRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGK 185 (1010)
T ss_dssp HHHHHTTTCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHTCCEEEEEEESTTSSH
T ss_pred HHHHHhhCCceeccCceeEEecCCccccCCCHHHHHHhcCCCccCCCccHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCc
Confidence 99999999999999999999999999999999999999998765 8999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCC------CchhhhhhhhHHHHhhcCcccCCCCCCCccccEEEEEEcCCCceecceeeeeeccc
Q 001068 268 TETAKIAMQYLAALGGGS------GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEK 341 (1166)
Q Consensus 268 Te~~K~il~yLa~~~~~~------~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~F~~~g~i~Ga~i~~yLLEK 341 (1166)
||++|+||+||+++++++ .|+++|++|||||||||||||++|||||||||||+|+||.+|.|+||+|.+|||||
T Consensus 186 Te~~K~i~~yla~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLLEk 265 (1010)
T 1g8x_A 186 TENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQFNNAGFISGASIQSYLLEK 265 (1010)
T ss_dssp HHHHHHHHHHHHHHHCCCCTTTSSHHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCG
T ss_pred chHHHHHHHHHHHhcccCCCcccchHHHHHHHHHHHHHHhCCCcCCCCCCccccceEEEEEECCCCCCcceEEEEEEcCC
Confidence 999999999999998653 58899999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCcchhHHHHhcCCCHHhHhhcCCCCccccccccCCCccCCCCcchHHHHHHHHHHHhhcCCCHHHHHHHH
Q 001068 342 SRVVQCAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVF 421 (1166)
Q Consensus 342 sRVv~q~~gERnfHIFYqLl~g~~~~~r~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~ 421 (1166)
||||.|++||||||||||||+|+++++++.|+|.++.+|+||++++|..++++||+++|..++.||++|||+++++..||
T Consensus 266 sRvv~q~~~ERnfHIFYqll~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~A~~~lg~~~~e~~~i~ 345 (1010)
T 1g8x_A 266 SRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFKITRQAMDIVGFSQEEQMSIF 345 (1010)
T ss_dssp GGGTCCCTTCCCBHHHHHHHHHCCHHHHHHHTCCCGGGCGGGSSSSCCCCBTCCHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred ceeeeecCCCCcchhHHHHHcCCCHHHHHHhCCCChHhcchhcCCCccccCCCChHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCeeeEEeCCCCccccCChhHHHHHHHHhCCCHHHHHHhHccceeeeCCceEEecCCHHHHHHHHHHHHHH
Q 001068 422 AMLAAVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKS 501 (1166)
Q Consensus 422 ~iLaAILhLGni~F~~~~~~~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~i~~~~e~~~~~lt~~qA~~~rdalak~ 501 (1166)
+|||||||||||+|...++ +.+.+.+.+.++.||.||||++++|.++||++++.+|+|.+++++|++||.++||||||+
T Consensus 346 ~ilaaILhLGni~F~~~~~-~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdalak~ 424 (1010)
T 1g8x_A 346 KIIAGILHLGNIKFEKGAG-EGAVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKA 424 (1010)
T ss_dssp HHHHHHHHHTTCCCBCCTT-SSCBCSCCHHHHHHHHHHTSCHHHHHHHHHSCEEESSSSEEECCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccceEEecCC-CccccCChHHHHHHHHHHCCCHHHHHHHHhCcEEEeCCeeEEeCCCHHHHHHHHHHHHHH
Confidence 9999999999999987655 678889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCCCcceEEEeecccCcCCCCCChHHHHHhhhhhHHHHhHhhhhhHHHHHHHHhcCCccc
Q 001068 502 IYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWA 581 (1166)
Q Consensus 502 LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~ey~~EgI~~~ 581 (1166)
||++||+|||.+||.+|.... ...+||||||||||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|+
T Consensus 425 lY~~LF~wlV~~IN~~l~~~~--~~~~IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~ 502 (1010)
T 1g8x_A 425 LYGRLFLWLVKKINNVLCSER--KAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWT 502 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHCCSS--CSEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCC--cCceeeeccCcccccCCcCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCcc
Confidence 999999999999999998643 578999999999999999999999999999999999999999999999999999999
Q ss_pred ccccC-CcHhHHHhhcC--CCccccccccccCCCCCChHHHHHHHHHHhC-CCCCcccCC--CCCeEEEeecceeeeccc
Q 001068 582 KVDFE-DNKDCLNLFEK--PLGLLSLLDEESTFPNGTDLTFANKLKQHLN-SNPCFRGER--DKSFTVSHYAGEVIYDTT 655 (1166)
Q Consensus 582 ~v~f~-dn~~~ldLie~--p~Gll~lLDee~~~p~~td~~f~~kl~~~~~-~~~~f~~~~--~~~F~I~HyaG~V~Y~~~ 655 (1166)
.|+|. ||++||||||+ |.|||+||||||++|++||.+|++|++++++ +|++|.+++ ...|+|+||||+|+|+++
T Consensus 503 ~i~f~~dn~~~idlie~~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~f~~~~~~~~~F~i~HyAG~V~Y~~~ 582 (1010)
T 1g8x_A 503 FIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQ 582 (1010)
T ss_dssp CCCCCCCSHHHHHHHHCTTTTCHHHHHHHHTTSSSCCHHHHHHHHHHHHTTTCTTEECCTTCSSEEEEEETTEEEEEECT
T ss_pred ccccccChHHHHHHHhcCCCCeeehhhhHHhCCCCCChHHHHHHHHHHhcCCCCCcccCCCCCCCEEEeeeceEEEEeec
Confidence 99995 99999999998 9999999999999999999999999999999 999998775 369999999999999999
Q ss_pred chhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCe
Q 001068 656 GFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPH 734 (1166)
Q Consensus 656 gfleKN~D~l~~d~~~ll~~s~~~l-~~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~Lm~~L~~t~ph 734 (1166)
|||+||+|+|++|++++|++|++.+ ..+|.... .+ +. ++....+.||+++|+.||+.||++|++|+||
T Consensus 583 gfleKN~D~l~~~~~~ll~~S~~~~~~~lf~~~~--~~-----~~----~~k~~~~~tv~~~fk~sL~~Lm~~L~~t~ph 651 (1010)
T 1g8x_A 583 DWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPN--IA-----SR----AKKGANFITVAAQYKEQLASLMATLETTNPH 651 (1010)
T ss_dssp THHHHHHCCCCHHHHHHHTTCSCHHHHHHHHCHH--HH-----SC----CCCSSSCCCHHHHHHHHHHHHHHHHTTSEEE
T ss_pred CccccccccccHHHHHHHHhCcHHHHHHHhcccc--cc-----cC----CCCCCCCCchHHHHHHHHHHHHHHHHhcCCe
Confidence 9999999999999999999999875 66886432 00 00 1112346899999999999999999999999
Q ss_pred eeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHHHHHHhhhhcccccc--CCChHHHHHHHHHHc
Q 001068 735 FIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVA--SQDPLSVSVAILHQF 812 (1166)
Q Consensus 735 fIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~--~~d~~~~~~~il~~~ 812 (1166)
||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|+.||++|.+. ++ ..|+++.|+.||..+
T Consensus 652 fVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~r~~~~~F~~RY~~L~~~-~~~~~~d~~~~~~~ll~~~ 730 (1010)
T 1g8x_A 652 FVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAPN-VPRDAEDSQKATDAVLKHL 730 (1010)
T ss_dssp EEEEECSCSSCCTTCCCHHHHHHHHHHSSHHHHHHHHTTSCCEEEEHHHHHHHHGGGSTT-CCTTCSCHHHHHHHHHHHT
T ss_pred eeeeecCCcccccCCcChhhcchhcccCccHHHHHHHHhCCcccccHHHHHHHHHHhCCC-CCcCCCCHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999987 54 348999999999999
Q ss_pred CcCCcceeecceeeeeeecccccccccccccccchh-hhhhhhcccccchhhhccchhhhhHHHHHHhHHHHHHHHHHHH
Q 001068 813 NILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGIL-RVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQ 891 (1166)
Q Consensus 813 ~~~~~~~~iGkTKVFlr~~~~~~LE~~R~~~l~aav-~IQa~~Rg~~aRr~y~~lr~aai~IQs~~RG~~aRr~y~~l~~ 891 (1166)
+++++.|++|+||||||++++..||+.|+..+..++ .||...+ +..++.++|+..++...+.
T Consensus 731 ~~~~~~~~~G~tkVF~r~~~l~~LE~~R~~~l~~~~~~iQY~~~--------------a~~L~~WIr~kqa~l~~r~--- 793 (1010)
T 1g8x_A 731 NIDPEQYRFGITKIFFRAGQLARIEEAREQRLGSEQTKSDYLKR--------------ANELVQWINDKQASLESRD--- 793 (1010)
T ss_dssp TCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHCCC---
T ss_pred CCCccceeehhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhhh---
Confidence 999999999999999999999999999998887654 4442111 2334455555555433311
Q ss_pred HHHHHHHHHHHHHHH
Q 001068 892 RHRAAVVIQRQIKSR 906 (1166)
Q Consensus 892 r~~AAi~IQ~~~R~~ 906 (1166)
...+...||+.++.+
T Consensus 794 ~~~sl~~IQ~ll~~f 808 (1010)
T 1g8x_A 794 FGDSIESVQSFMNAH 808 (1010)
T ss_dssp CCSSHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHH
Confidence 123456666666644
No 9
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=4.3e-198 Score=1814.47 Aligned_cols=715 Identities=44% Similarity=0.739 Sum_probs=633.5
Q ss_pred cCcEEEEecC---CCCEEeEEEEEecCCeeEEEcCCCcEEEEeCCCcccCCCCccCCccccccCCCCCchhHHHHHHHHh
Q 001068 118 KKLQSWFQLP---NGNWELGKILSISGTESVISLPEGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLHYRY 194 (1166)
Q Consensus 118 ~~~~vw~~~~---~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~~~~~np~~~~~v~Dl~~L~~LnE~svL~~L~~Ry 194 (1166)
.+.+||++++ +++|..|+|++..+++++|..++|++++|+.+++.++||+.++++|||+.|++|||++|||||+.||
T Consensus 31 ~~~~vWv~~~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~v~~~np~~~~~~~Dl~~L~~l~E~svL~nL~~Ry 110 (770)
T 1w9i_A 31 DKRYIWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHNLRVRY 110 (770)
T ss_dssp -CCEEEECSSTTCTTCCEEEEEEEECSSEEEEECTTSCEEEEETTTCEECCCGGGTTCSBGGGCSCCCHHHHHHHHHHHH
T ss_pred CCCEEEeeCCcccccCceEEEEEEecCCeEEeecCCCcEEEEchHhccccCcccccchhhhhhhccCCHHHHHHHHHHHH
Confidence 4568999999 8999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred hcCccccccCCceEEeCCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHH
Q 001068 195 KQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAK 272 (1166)
Q Consensus 195 ~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K 272 (1166)
..++||||+|++|||||||+++|||+++++..|+++... ||||||||+.||++|+++++||||||||||||||||++|
T Consensus 111 ~~~~IYTy~G~iLvavNPyk~l~iY~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK 190 (770)
T 1w9i_A 111 NQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTK 190 (770)
T ss_dssp HTTCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHH
T ss_pred hcCCceeccCceeEEecCCccccCCCHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHHH
Confidence 999999999999999999999999999999999998765 899999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCC------CchhhhhhhhHHHHhhcCcccCCCCCCCccccEEEEEEcCCCceecceeeeeecccccccc
Q 001068 273 IAMQYLAALGGGS------GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQ 346 (1166)
Q Consensus 273 ~il~yLa~~~~~~------~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~F~~~g~i~Ga~i~~yLLEKsRVv~ 346 (1166)
+||+||+++++++ .++++|+++||||||||||||++|||||||||||+|+||.+|.|+||+|++|||||||||.
T Consensus 191 ~i~~yla~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~yLLEKSRVv~ 270 (770)
T 1w9i_A 191 KVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVF 270 (770)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCGGGGTC
T ss_pred HHHHHHHHhccccCCcccCcHHHHHHHHHHHHHHhCCCcCCCCCCcCCcceEEEEEECCCCCEeeeEEEEEeccCceeec
Confidence 9999999998753 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcchhHHHHhcCCCHHhHhhcCCCCcccccc-ccCCCccCCCCcchHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 001068 347 CAEGERAYHIFYQLCVGAPPALREKLNLMSAKEYKY-LRQSSCYSINGVDDAEQFRIVVEALDIVHVSKEDQESVFAMLA 425 (1166)
Q Consensus 347 q~~gERnfHIFYqLl~g~~~~~r~~l~L~~~~~y~y-L~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLa 425 (1166)
|++||||||||||||+|+++++++.|+|.++.+|+| |+++ |..++++||+++|+.++.||++|||+++++..||+|||
T Consensus 271 q~~gERnfHIFYqLlaG~~~~~~~~l~L~~~~~y~yll~~g-~~~~~~~dD~~~f~~~~~Am~~lGf~~~e~~~i~~ila 349 (770)
T 1w9i_A 271 QSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSG-CVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIA 349 (770)
T ss_dssp CCTTCCSBHHHHHHHHHCCHHHHHHHTCCCGGGCTTTSSSS-CCCCTTCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ccCCCCcchhHHHHhcCCCHHHHHHhCCCChhhccccccCC-ccccCCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 7764 67899999999999999999999999999999999999
Q ss_pred HHHHhcCeeeEEeCCCCccccCChhHHHHHHHHhCCCHHHHHHhHccceeeeCCceEEecCCHHHHHHHHHHHHHHHHHH
Q 001068 426 AVLWLGNVSFTVIDNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKMRVGNDTIVQNLTLSQATDTRDALAKSIYAC 505 (1166)
Q Consensus 426 AILhLGni~F~~~~~~~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~i~~~~e~~~~~lt~~qA~~~rdalak~LY~~ 505 (1166)
||||||||+|. .++++.+.+.+.+.++.||.||||++++|.++|+++++.+|+|.+++++|++||.++||||||+||++
T Consensus 350 aILhLGNi~F~-~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~r 428 (770)
T 1w9i_A 350 GILHLGNIKFE-KGAGEGAVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGR 428 (770)
T ss_dssp HHHHHHTCCCE-ECSSSSEECSCCHHHHHHHHHHTCCHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCceEe-cCCCCccccCChHHHHHHHHHhCCCHHHHHHHhhCcEEEeCCeeEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999 55567788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCCCCcceEEEeecccCcCCCCCChHHHHHhhhhhHHHHhHhhhhhHHHHHHHHhcCCccccccc
Q 001068 506 LFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDF 585 (1166)
Q Consensus 506 LF~wiV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~ey~~EgI~~~~v~f 585 (1166)
||+|||.+||.+|..... ..+||||||||||+|+.|||||||||||||+|||+||+|+|+.||+||.+|||+|+.|+|
T Consensus 429 LF~wlV~~IN~~l~~~~~--~~~IGvLDI~GFE~F~~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f 506 (770)
T 1w9i_A 429 LFLWLVKKINNVLCQERK--AYFIGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDF 506 (770)
T ss_dssp HHHHHHHHHHHHHCCSCC--SEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCG
T ss_pred HHHHHHHHHHHHhcCCCC--CCeeeeccCccccccccCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeecc
Confidence 999999999999986433 789999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CcHhHHHhhcC--CCccccccccccCCCCCChHHHHHHH-HHHhCCCCCcccCCC--CCeEEEeecceeeecccchhh
Q 001068 586 E-DNKDCLNLFEK--PLGLLSLLDEESTFPNGTDLTFANKL-KQHLNSNPCFRGERD--KSFTVSHYAGEVIYDTTGFLE 659 (1166)
Q Consensus 586 ~-dn~~~ldLie~--p~Gll~lLDee~~~p~~td~~f~~kl-~~~~~~~~~f~~~~~--~~F~I~HyaG~V~Y~~~gfle 659 (1166)
. ||++||||||+ |.|||+||||||++|++||.+|++|| .+++++|++|.+++. .+|+|+||||+|+|+++|||+
T Consensus 507 ~~dn~~~idLiek~~p~GilslLDEec~~p~~tD~~f~~kL~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gfle 586 (770)
T 1w9i_A 507 GLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLE 586 (770)
T ss_dssp GGGGHHHHHHHHCTTTTCHHHHHHHHHSSSSCCHHHHHHHHHHHHTTTSTTEECCSSCSSEEEEEETTEEEEEECTTHHH
T ss_pred ccCcHHHHHHHhCCCCCchhhhhhhhhCCCCCChHHHHHHHHHHhcCCCCCccCCCCCCCceEeeccCccccccccChhh
Confidence 5 99999999998 99999999999999999999999996 567889999987763 799999999999999999999
Q ss_pred hccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeee
Q 001068 660 KNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRC 738 (1166)
Q Consensus 660 KN~D~l~~d~~~ll~~s~~~l-~~lf~~~~~~~s~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~Lm~~L~~t~phfIrC 738 (1166)
||+|+|++|++++|++|++.+ ..+|.... +. +. ++......||+++||.||+.||++|++|+||||||
T Consensus 587 KNkD~l~~~~~~ll~~S~~~~v~~Lf~~~~-~~------~~----~~k~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRC 655 (770)
T 1w9i_A 587 KNKDPLQQDLELCFKDSSDNVVTKLFNDPN-IA------SR----AKKGANFITVAAQYKEQLASLMATLETTNPHFVRC 655 (770)
T ss_dssp HHHCCCCHHHHHHHHTCSSTTHHHHHHCHH-HH------CC----CEETTEECCHHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred hccCcccHHHHHHHHhchHHHHHHHhhccC-CC------CC----CCCCCCCcchhHHHHHHHHHHHHHHHhcCceeeee
Confidence 999999999999999999875 67886432 00 00 00122358999999999999999999999999999
Q ss_pred cCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHHHHHHhhhhccccccC--CChHHHHHHHHHHcCcCC
Q 001068 739 IKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLESVAS--QDPLSVSVAILHQFNILP 816 (1166)
Q Consensus 739 IkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~RY~~L~~~~~~~--~d~~~~~~~il~~~~~~~ 816 (1166)
||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|+.||++|++ .++. .|+++.|+.||..+++++
T Consensus 656 IkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF~~RY~~L~~-~~~~~~~d~k~~~~~lL~~~~~~~ 734 (770)
T 1w9i_A 656 IIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFVKRYYLLAP-NVPRDAEDSQKATDAVLKHLNIDP 734 (770)
T ss_dssp ECSCSSCCSSCCCHHHHHHHHHHSSHHHHHHHTTSSCCEEEESCC-----------------------------------
T ss_pred ecCCcccccCccCchhhHhHhcccchHHHHHHHHhcCcccccHHHHHHHHHHhcc-ccccCCCCHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999999999998 5543 488999999999999999
Q ss_pred cceeecceeeeeeecccccccccccccccchh
Q 001068 817 EMYQVGYTKLFFRAGQIGMLEDTRNRTLHGIL 848 (1166)
Q Consensus 817 ~~~~iGkTKVFlr~~~~~~LE~~R~~~l~aav 848 (1166)
+.|++|+||||||++++..||+.|+..+..++
T Consensus 735 ~~~~~G~TKVF~r~~~l~~LE~~R~~~l~~~~ 766 (770)
T 1w9i_A 735 EQFRFGITKIFFRAGQLARIEEARELRGDYKD 766 (770)
T ss_dssp -CCCCCSSEEEECTTTTTC-------------
T ss_pred ccEEeCCeeEEecccHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998887653
No 10
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=6.4e-197 Score=1818.19 Aligned_cols=729 Identities=36% Similarity=0.622 Sum_probs=659.9
Q ss_pred EEEEecCCCCEEeEEEEEecCCeeEEEcC--CCcEEEEeCCCcccCCCCccCCccccccCCCCCchhHHHHHHHHhhcCc
Q 001068 121 QSWFQLPNGNWELGKILSISGTESVISLP--EGKVLKVKSENLVSANPDILDGVDDLMQLSYLNEPSVLYNLHYRYKQDM 198 (1166)
Q Consensus 121 ~vw~~~~~~~~~~~~v~~~~~~~~~v~~~--~g~~~~v~~~~~~~~np~~~~~v~Dl~~L~~LnE~svL~~L~~Ry~~~~ 198 (1166)
+||+++|+++|..|+|++..++.++|.+. +|++++|+.+++.|+||+..+++|||+.|++|||++|||||+.||.+++
T Consensus 2 ~vWv~~~~~~~~~~~v~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~L~E~svL~nL~~Ry~~~~ 81 (784)
T 2v26_A 2 PVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDR 81 (784)
T ss_dssp CEEEEETTTEEEEEEEEEECSSEEEEEC----CCCEEEEGGGCEECCSCSSCCCSBGGGSSSCSHHHHHHHHHHHHHTTC
T ss_pred eEEEEcCCCcEEEEEEEEecCCeEEEEEECCCCCEEEEehhhccccccccccccchhhhhhhccHHHHHHHHHHHHhcCc
Confidence 59999999999999999999999999864 6889999999999999999999999999999999999999999999999
Q ss_pred cccccCCceEEeCCCCCC-CCCCHHHHHHhhcCCCC--CCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHH
Q 001068 199 IYTKAGPVLVAINPFKKV-PLYGNYYIEAYKSKSIE--SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 199 iYT~~G~iLiavNP~k~l-~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il 275 (1166)
||||+|++|||||||+++ |||+++++..|+++... ||||||||+.||++|+++++||||||||||||||||++|+||
T Consensus 82 IYTy~G~iLiaVNPyk~l~~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~ 161 (784)
T 2v26_A 82 IYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 161 (784)
T ss_dssp CEEEETTEEEEECCSSCCTTTTSHHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred eeeeccceEEEecCCcCcCCCCCHHHHHHHhCCCcccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehHHHHH
Confidence 999999999999999999 69999999999998765 899999999999999999999999999999999999999999
Q ss_pred HHHHhccCCC-CchhhhhhhhHHHHhhcCcccCCCCCCCccccEEEEEEcCCCceecceeeeeeccccccccccCCCCcc
Q 001068 276 QYLAALGGGS-GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCAEGERAY 354 (1166)
Q Consensus 276 ~yLa~~~~~~-~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERnf 354 (1166)
+|||++++++ .|+++|+++||||||||||||+||||||||||||+|+||.+|+|+||+|++|||||||||.|++|||||
T Consensus 162 ~yla~~~~~~~~ie~~il~snpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNf 241 (784)
T 2v26_A 162 RYLTESYGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNY 241 (784)
T ss_dssp HHHHHHHC------CHHHHTHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCCGGGTCCCTTCCSB
T ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHHhCCCcCCCCCCcchhheEEEEEEecCCcEeeeeeeeeeccCCeEeeecCCCCcc
Confidence 9999987654 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhcCCCHHhHhhcCCCCccccccccCCCc--------------------------cCCCCcchHHHHHHHHHHHh
Q 001068 355 HIFYQLCVGAPPALREKLNLMSAKEYKYLRQSSC--------------------------YSINGVDDAEQFRIVVEALD 408 (1166)
Q Consensus 355 HIFYqLl~g~~~~~r~~l~L~~~~~y~yL~~~~~--------------------------~~~~~~dD~~~f~~~~~Al~ 408 (1166)
|||||||+|+++++|++|+|.++.+|+||+++.+ ..++++||+++|+.++.||+
T Consensus 242 HIFYqLlaG~~~~~~~~l~L~~~~~y~yL~~g~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Am~ 321 (784)
T 2v26_A 242 HIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMK 321 (784)
T ss_dssp HHHHHHHHHSCHHHHHHTTCCCGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHHHCCBCCSSCCHHHHHHHHHHHHH
T ss_pred hhhHHHHcCCCHHHHHHcCCCChhhCccccCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998753 24568999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhcCeeeEEeCC-CCcccc--CChhHHHHHHHHhCCCHHHHHHhHccceee-----eCCc
Q 001068 409 IVHVSKEDQESVFAMLAAVLWLGNVSFTVIDN-ENHVEP--VADEGLITVAKLIGCDIGELKLALSTRKMR-----VGND 480 (1166)
Q Consensus 409 ~lg~s~~e~~~i~~iLaAILhLGni~F~~~~~-~~~~~~--~~~~~l~~aA~LLgv~~~~L~~~L~~~~i~-----~~~e 480 (1166)
+|||+++++..||+|||||||||||+|...++ ++.+.+ .+.+.++.||.||||++++|.++||+|++. ++|+
T Consensus 322 ~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~v~~~~~~~l~~~a~LLgv~~~~L~~aL~~r~~~t~~g~~~ge 401 (784)
T 2v26_A 322 KIGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGT 401 (784)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHTCCEEECTTTTSSEEECGGGHHHHHHHHHHHTCCHHHHHHHHHEEEC----------
T ss_pred HcCCCHHHHHHHHHHHHHHHhcccceeeeccCCCCccccccCCHHHHHHHHHHhCCCHHHHHHHHhhcEEeccccCCCCC
Confidence 99999999999999999999999999997432 233333 467899999999999999999999999987 6789
Q ss_pred eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEEEeecccCcCCCCCChHHHHHhhhhhHHHHh
Q 001068 481 TIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQH 560 (1166)
Q Consensus 481 ~~~~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcINyaNEkLQ~~ 560 (1166)
.++++++++||.++||||||+||++||+|||.+||.+|... ....+||||||||||+|+.|||||||||||||+|||+
T Consensus 402 ~i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~--~~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~ 479 (784)
T 2v26_A 402 VIKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFE--TSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQF 479 (784)
T ss_dssp -CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS--CCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHH
T ss_pred eEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--cccceeeecccCCcccCCcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999753 3468999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHhcCCcccccccCCcHhHHHhhcC-CCccccccccccCCCCCChHHHHHHHHHHhCCCCCcccCC--
Q 001068 561 FNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK-PLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNPCFRGER-- 637 (1166)
Q Consensus 561 f~~~~F~~eq~ey~~EgI~~~~v~f~dn~~~ldLie~-p~Gll~lLDee~~~p~~td~~f~~kl~~~~~~~~~f~~~~-- 637 (1166)
||+|+|+.||+||.+|||+|+.|+|.||++||||||+ |.|||+||||||++|++||.+|++||++++++|++|..++
T Consensus 480 F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDEe~~~p~~tD~~f~~kl~~~~~~~~~~~~p~~~ 559 (784)
T 2v26_A 480 FNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKDHFRLSIPRKS 559 (784)
T ss_dssp HHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSCCHHHHHHHHHHHTTTCTTEECGGGC
T ss_pred HHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHHHHhcCCCCChHHHHHHHHHHhCCCcccccCCCc
Confidence 9999999999999999999999999999999999997 8999999999999999999999999999999999886543
Q ss_pred ----------CCCeEEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCccCCCC
Q 001068 638 ----------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLYKAGGA 706 (1166)
Q Consensus 638 ----------~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~s~~~l-~~lf~~~~~~~s~~~~~~~~~~~~~~ 706 (1166)
+.+|+|+||||+|+|+++|||+||+|+|+++++++|++|++.+ ..+|...... +.. .+....
T Consensus 560 ~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~l~~Lf~~~~~~-~~~------~~~~~~ 632 (784)
T 2v26_A 560 KLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRDKFIRELFESSTNN-NKD------TKQKAG 632 (784)
T ss_dssp SSGGGTTSCTTSEEEEEETTEEEEEECTTHHHHTBCCCCHHHHHHHHTCSCHHHHHHC----------------------
T ss_pred cccccccccCCCceEeeecCccEeeeccCHHHhccchhhHHHHHHHHhchhhHHHHHccccccc-ccC------cccCCC
Confidence 2489999999999999999999999999999999999999875 5688653211 000 000111
Q ss_pred CCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccChHHHHH
Q 001068 707 DSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFAR 786 (1166)
Q Consensus 707 ~~~~~tv~~~fk~qL~~Lm~~L~~t~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~~eF~~ 786 (1166)
...+.||+++||.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|.+|++
T Consensus 633 ~~~~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~f~eF~~ 712 (784)
T 2v26_A 633 KLSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYN 712 (784)
T ss_dssp -CCCCBHHHHHHHHHHHHHHHHHTSEEEEEEEECCCSSCCSSCCCHHHHHHHHHHTTHHHHHHHHTSCCSEEEEHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHHHHHccCCeeEEEecCCcccccCccccccccccccccccHHHHHHHHhcCCccccHHHHHH
Confidence 23458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccccccCCChHHHHHHHHHHcCcCCcceeecceeeeeeecccccccccccccccchhhhhhhhcccc
Q 001068 787 RYGFLLLESVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRAGQIGMLEDTRNRTLHGILRVQSCFRGHQ 858 (1166)
Q Consensus 787 RY~~L~~~~~~~~d~~~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R~~~l~aav~IQa~~Rg~~ 858 (1166)
||++|+|...+..|++..|+.||..+++++++|++|+||||||+++++.||..+......+..|++.+|+|+
T Consensus 713 RY~~L~~~~~~~~d~~~~~~~ll~~~~~~~~~~~~G~TKVF~r~g~~~~le~~~~~~~~~~~~ii~~v~~wl 784 (784)
T 2v26_A 713 MYKKYMPDKLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKRVNHWL 784 (784)
T ss_dssp HHGGGCCHHHHTSCHHHHHHHHHHHTTCCGGGEEECSSEEEECTTCHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_pred HHhhcCCcccCCCCHHHHHHHHHHHcCCCcCcEEeCCceEEEcCCHHHHHHHHHhhCHHHHHHHHHHHHhhC
Confidence 999999987767799999999999999999999999999999999999999886655545555666666663
No 11
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=7e-191 Score=1742.56 Aligned_cols=662 Identities=39% Similarity=0.663 Sum_probs=607.7
Q ss_pred ccCCccccccCCCCCchhHHHHHHHHhhcCccccccCCceEEeCCCCCCCCCCHHHHHHhhcCCCC--CCchhHHHHHHH
Q 001068 168 ILDGVDDLMQLSYLNEPSVLYNLHYRYKQDMIYTKAGPVLVAINPFKKVPLYGNYYIEAYKSKSIE--SPHVYAITDTAI 245 (1166)
Q Consensus 168 ~~~~v~Dl~~L~~LnE~svL~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iY~~~~~~~y~~~~~~--~PHiyavA~~Ay 245 (1166)
..+++|||+.|++|||++|||||+.||..+.||||+|++|||||||+++|+|+++++..|+++... ||||||||+.||
T Consensus 6 ~~~~~~Dl~~L~~l~E~~vl~nL~~Ry~~~~IYTy~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay 85 (697)
T 1lkx_A 6 KAEGVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAY 85 (697)
T ss_dssp ---CCSSGGGCSSCSHHHHHHHHHHHHHTTCCEEESSSCEEEECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHH
T ss_pred cccCCcccccCCCCCHHHHHHHHHHHHhcCCcEEeeCCeEEEEcCCcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHH
Confidence 356899999999999999999999999999999999999999999999999999999999998764 899999999999
Q ss_pred HHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhccC-CC----CchhhhhhhhHHHHhhcCcccCCCCCCCccccEEE
Q 001068 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG-GS----GIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIE 320 (1166)
Q Consensus 246 ~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~-~~----~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~ 320 (1166)
+.|+++++||||||||||||||||++|+||+||+++++ ++ .|+++|++|||||||||||||+||||||||||||+
T Consensus 86 ~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~ 165 (697)
T 1lkx_A 86 RSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYME 165 (697)
T ss_dssp HHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHBBCCSSCSSCBCSEEEEE
T ss_pred HHHHhcCCCcEEEecCCCCCCchhhHHHHHHHHHhhcCCCCCccccHHHHHHhcchHHHHhcCcccCCCCCcchhheeEE
Confidence 99999999999999999999999999999999999987 32 58899999999999999999999999999999999
Q ss_pred EEEcCCCceecceeeeeeccccccccccCCCCcchhHHHHhcCCCHHhHhhcCCC-CccccccccCCCccCCCCcchHHH
Q 001068 321 IHFSETGKISGANIQTFLLEKSRVVQCAEGERAYHIFYQLCVGAPPALREKLNLM-SAKEYKYLRQSSCYSINGVDDAEQ 399 (1166)
Q Consensus 321 l~F~~~g~i~Ga~i~~yLLEKsRVv~q~~gERnfHIFYqLl~g~~~~~r~~l~L~-~~~~y~yL~~~~~~~~~~~dD~~~ 399 (1166)
|+||.+|.|+||+|++|||||||||.|++||||||||||||+|++++++++|+|. ++.+|+||++++|..++++||+++
T Consensus 166 i~F~~~g~i~Ga~I~~yLLEKSRVv~q~~gERnfHIFYqllaG~~~~~~~~l~L~~~~~~y~yL~~~~~~~~~~~dD~~~ 245 (697)
T 1lkx_A 166 MQFNAVGSPIGGKITNYLLEKSRVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGE 245 (697)
T ss_dssp EEECTTCCEEEEEEEEECCCGGGGTCCCTTCCCBHHHHHHHTTSCHHHHHHHTCCSCGGGSHHHHHTTCCCCTTCCHHHH
T ss_pred EEECCCCCEeeeeeeeeeccCceeeeecCCCCceeehhHHhcCCCHHHHHHhcCCCChhhCccccCCCCcccCCCchHHH
Confidence 9999999999999999999999999999999999999999999999999999998 899999999999999999999999
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhcCeeeEEe----CCCCccccCChhHHHHHHHHhCCCHHHHHHhHcccee
Q 001068 400 FRIVVEALDIVHVSKEDQESVFAMLAAVLWLGNVSFTVI----DNENHVEPVADEGLITVAKLIGCDIGELKLALSTRKM 475 (1166)
Q Consensus 400 f~~~~~Al~~lg~s~~e~~~i~~iLaAILhLGni~F~~~----~~~~~~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~i 475 (1166)
|+.++.||++|||+++++..||+|||||||||||+|... ++.+.+++.+.+.++.||.||||++++|.++||+|++
T Consensus 246 f~~~~~Am~~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~~L~~r~~ 325 (697)
T 1lkx_A 246 FKIIVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSI 325 (697)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEEETTC----CEEEESSHHHHHHHHHHHTSCHHHHHHHHHBCC-
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccceEeecccccCCCCcceeCCHHHHHHHHHhhCCCHHHHHHHHhccEE
Confidence 999999999999999999999999999999999999872 2225788999999999999999999999999999999
Q ss_pred eeC----CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEEEeecccCcCCCCCChHHHHHh
Q 001068 476 RVG----NDTIVQNLTLSQATDTRDALAKSIYACLFEWLVEQINKSLAVGKRRTGRSISILDIYGFESFDRNSFEQFCIN 551 (1166)
Q Consensus 476 ~~~----~e~~~~~lt~~qA~~~rdalak~LY~~LF~wiV~~IN~~L~~~~~~~~~~IgILDi~GFE~f~~NsfEQLcIN 551 (1166)
.++ +|.+++++|++||.++||||||+||++||+|||.+||.+|.... ....+||||||||||+|+.|||||||||
T Consensus 326 ~~~~g~~~e~i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~~-~~~~~IGvLDI~GFE~f~~NsFEQlcIN 404 (697)
T 1lkx_A 326 STGVGKRCSVISVPMDCNQAAYSRDALAKALYERLFNWLVSKINTIINCTT-EKGPVIGILDIYGFEVFQNNSFEQLNIN 404 (697)
T ss_dssp ---------CCCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS-CCCCEEEEEECCCCCCCSSBCHHHHHHH
T ss_pred eeccCCCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCceeEEeeccccccccCcCCHHHHHHH
Confidence 999 99999999999999999999999999999999999999998643 3468999999999999999999999999
Q ss_pred hhhhHHHHhHhhhhhHHHHHHHHhcCCcccccccCCcHhHHHhhcC-CCccccccccccCCCCCChHHHHHHHHHHhCCC
Q 001068 552 YANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFEDNKDCLNLFEK-PLGLLSLLDEESTFPNGTDLTFANKLKQHLNSN 630 (1166)
Q Consensus 552 yaNEkLQ~~f~~~~F~~eq~ey~~EgI~~~~v~f~dn~~~ldLie~-p~Gll~lLDee~~~p~~td~~f~~kl~~~~~~~ 630 (1166)
||||+|||+||+|+|+.||+||.+|||+|+.|+|.||++||||||+ |.|||+||||||++|++||.+|++||++++++|
T Consensus 405 y~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~~p~~tD~~f~~kl~~~~~~~ 484 (697)
T 1lkx_A 405 FCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSICKQFEKN 484 (697)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHSTTCCHHHHHHHHHHHSSSS
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhCCCCCChHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred CCcccCC--------CCCeEEEeecceeeecccchhhhccCcCcHHHHHHHhhcCcch-hHHhhccccccCCCCccCCCc
Q 001068 631 PCFRGER--------DKSFTVSHYAGEVIYDTTGFLEKNRDLLHLDSIELLSSCSCHL-PQIFASNMLSQSNKPVVGPLY 701 (1166)
Q Consensus 631 ~~f~~~~--------~~~F~I~HyaG~V~Y~~~gfleKN~D~l~~d~~~ll~~s~~~l-~~lf~~~~~~~s~~~~~~~~~ 701 (1166)
++|.+++ ..+|+|+||||+|+|+++|||+||+|+|++|++++|++|++.+ ..+|.....
T Consensus 485 ~~f~~~~~~~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~l~~lf~~~~~------------ 552 (697)
T 1lkx_A 485 PHLQSYVVSKDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQGLFPPTRP------------ 552 (697)
T ss_dssp TTEECTTTSCCTTSCTTEEEEEETTEEEEEECTTHHHHHHCCCCHHHHHHHHTCCSHHHHHHCC----------------
T ss_pred CccccCCCCCCCccccCceeeeeeeeEEEEccCChhhhhcccccHHHHHHHhccchHHHHHhcccccc------------
Confidence 9997542 4789999999999999999999999999999999999999875 567754221
Q ss_pred cCCCCCCCCccHHHHHHHHHHHHHHHHhccCCeeeeecCCCCCCCCCCcchhhhhHhhhccChhHHHHHhhcCCCCccCh
Q 001068 702 KAGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNFQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSH 781 (1166)
Q Consensus 702 ~~~~~~~~~~tv~~~fk~qL~~Lm~~L~~t~phfIrCIkPN~~k~p~~fd~~~V~~QLr~~gvle~vri~r~Gyp~r~~~ 781 (1166)
.+...+..||+++||.||+.||++|++|+||||||||||+.+.|+.||..+|++||||+||||+|||+|+|||+|++|
T Consensus 553 --~~~~~r~~Tv~~~fk~sL~~Lm~~L~~t~phfVRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~ 630 (697)
T 1lkx_A 553 --EDSKKRPETAGSQFRNAMNALITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRHQVRYLGLLENVRVRRAGFAGRIEY 630 (697)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHTTSEEEEEEEECCCTTCCTTCCCHHHHHHHHHHHTSHHHHHHHHHSCSBCCBS
T ss_pred --ccccCCCCcHHHHHHHHHHHHHHHHHccCCcceEeecCCCcCCCCCcChhhccccCcccccHHHHHHHhcCCCccccH
Confidence 011223579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccccccC--CChHHHHHHHHHHcCcCCcceeecceeeeeeec-ccccccccccccc
Q 001068 782 QKFARRYGFLLLESVAS--QDPLSVSVAILHQFNILPEMYQVGYTKLFFRAG-QIGMLEDTRNRTL 844 (1166)
Q Consensus 782 ~eF~~RY~~L~~~~~~~--~d~~~~~~~il~~~~~~~~~~~iGkTKVFlr~~-~~~~LE~~R~~~l 844 (1166)
.+|+.||++|++...+. .|+++.|+.||..+++++++|++|+||||||++ .+..||+.|+..+
T Consensus 631 ~eF~~RY~~L~~~~~~~~~~~~k~~~~~ll~~~~~~~~~~~~G~TKVF~r~~~~l~~LE~~R~~~l 696 (697)
T 1lkx_A 631 TRFYNRYKMLCKKTWPSFNGTAKQATELILQQHNIDKEEIRMGKTKVFIRNPTTLFYFEEKRELEM 696 (697)
T ss_dssp HHHHTTSCSSSCC---------CHHHHHHHHTTCCCGGGEEECSSBEEESSSHHHHHHHTCC----
T ss_pred HHHHHHHHHhCcccccccCCCHHHHHHHHHHHcCCCcCcEEeCCeeEEEeCCchHHHHHHHHHhhC
Confidence 99999999999976553 578899999999999999999999999999996 7899999998765
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.71 E-value=4.2e-17 Score=210.82 Aligned_cols=188 Identities=16% Similarity=0.229 Sum_probs=133.4
Q ss_pred ccchhhhhhhhcccccchhhhccchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHH
Q 001068 844 LHGILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQ 923 (1166)
Q Consensus 844 l~aav~IQa~~Rg~~aRr~y~~lr~aai~IQs~~RG~~aRr~y~~l~~r~~AAi~IQ~~~R~~~aRk~~~~~r~aai~IQ 923 (1166)
..+++.||++||||.+|+.|..++.+++.||++|||+++|+.|..++ +..||+.||++||+|++|+.|...+.+++.||
T Consensus 816 ~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~lr-~~~aav~IQ~~~Rg~l~R~~y~~~~~aai~iQ 894 (1080)
T 2dfs_A 816 TRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMML-REHKSIIIQKHVRGWLARVHYHRTLKAIVYLQ 894 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTTHHHHHTTTTHHHHHHHH
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 45788999999999999999999999999999999999999998765 45789999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHhhhhhhhhc----------------------ccCchhHH--------HHHHHHHHHH---------
Q 001068 924 SVIRGWLVRRCSGDICLLKSVES----------------------KGNDSDEV--------LVKASFLAEL--------- 964 (1166)
Q Consensus 924 s~~Rg~laRr~~~~lr~~~~~~~----------------------~~~~~~~l--------~~~~~~l~~L--------- 964 (1166)
+.||++++|+.+..++..++... ......++ .....++.+|
T Consensus 895 s~~R~~laRr~~~~Lk~ear~~~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~ 974 (1080)
T 2dfs_A 895 CCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974 (1080)
T ss_dssp HHHHHHHHHHHTTTC-----------------------------------------CHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988866543100 00000000 0111122222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 001068 965 -QRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDD 1032 (1166)
Q Consensus 965 -q~r~~k~e~~l~ekeeen~~L~~eL~~~e~r~~E~e~~~~~~ee~lqkq~~~LQ~~l~~lk~~Le~~e 1032 (1166)
+.+...++.++..++++++.++++++.+..+..+++++...+.+.+++++..|+++...+++++++++
T Consensus 975 ~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223334455566666666666666666666666766666666777777777777777776665554
No 13
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.73 E-value=2.7e-09 Score=90.54 Aligned_cols=45 Identities=22% Similarity=0.362 Sum_probs=28.4
Q ss_pred chhhhhhhhcccccchhhhccchhhhhHHHHHHhHHHHHHHHHHH
Q 001068 846 GILRVQSCFRGHQARLCLKELRRGIVALQSFIRGEKIRKEYALVL 890 (1166)
Q Consensus 846 aav~IQa~~Rg~~aRr~y~~lr~aai~IQs~~RG~~aRr~y~~l~ 890 (1166)
+++.||++||||++|+.|..++.+++.||++|||+++|+.|..++
T Consensus 7 aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r 51 (58)
T 2ix7_C 7 ACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLR 51 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666665544
No 14
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.73 E-value=1.6e-08 Score=82.33 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=39.7
Q ss_pred cchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001068 866 LRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKL 912 (1166)
Q Consensus 866 lr~aai~IQs~~RG~~aRr~y~~l~~r~~AAi~IQ~~~R~~~aRk~~ 912 (1166)
++.+++.||++|||+++|+.|..++ +..||+.||+.||||.+|+.|
T Consensus 2 ~r~a~i~iQ~~~Rg~l~R~~~~~~~-~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 2 ISQAIKYLQNNIKGFIIRQRVNDEM-KVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHhh
Confidence 5778999999999999999997765 456899999999999998876
No 15
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.71 E-value=2.1e-08 Score=85.04 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHhhHHHHHHHHHhhhh
Q 001068 893 HRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLL 941 (1166)
Q Consensus 893 ~~AAi~IQ~~~R~~~aRk~~~~~r~aai~IQs~~Rg~laRr~~~~lr~~ 941 (1166)
+.||+.||++||||++|+.|..++.+++.||+.|||+++|+.+..++..
T Consensus 5 ~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~~r~~ 53 (58)
T 2ix7_C 5 RAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRRT 53 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888888888888888888887776554
No 16
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.41 E-value=3.2e-07 Score=74.62 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchh--hHHHHHHHHhhHHHHHHH
Q 001068 894 RAAVVIQRQIKSRVARQKLKNIKY--SSIMIQSVIRGWLVRRCS 935 (1166)
Q Consensus 894 ~AAi~IQ~~~R~~~aRk~~~~~r~--aai~IQs~~Rg~laRr~~ 935 (1166)
.||+.||++|||+++|+.|..++. +++.||+.||||++|+.|
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 689999999999999999999988 999999999999999876
No 17
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.40 E-value=1e-06 Score=116.40 Aligned_cols=139 Identities=17% Similarity=0.167 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhch---hhHHHHHHHHhhHHHHHHHHHhhhhhhhh---cccCchhHHHHHHHHHHHHH
Q 001068 892 RHRAAVVIQRQIKSRVARQKLKNIK---YSSIMIQSVIRGWLVRRCSGDICLLKSVE---SKGNDSDEVLVKASFLAELQ 965 (1166)
Q Consensus 892 r~~AAi~IQ~~~R~~~aRk~~~~~r---~aai~IQs~~Rg~laRr~~~~lr~~~~~~---~~~~~~~~l~~~~~~l~~Lq 965 (1166)
...+++.||+.||||++|+.|.+++ .|++.||+.||+|++||.+..++...+.. ......+++..+...+.+++
T Consensus 791 l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~~~~rl~~klkpLl~~a~~~~El~~L~~eL~el~ 870 (1184)
T 1i84_S 791 ITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTK 870 (1184)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTTCCCCTHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999874 68999999999999998766555443311 12222344444555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhccc
Q 001068 966 RRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSME---EVWQKQMRSLQSSLSIAKKSLAI 1030 (1166)
Q Consensus 966 ~r~~k~e~~l~ekeeen~~L~~eL~~~e~r~~E~e~~~~~~e---e~lqkq~~~LQ~~l~~lk~~Le~ 1030 (1166)
.++..++..+.+++++...+++++..++.++.+....+...+ +.++.+...++.+++.++..+++
T Consensus 871 ~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee 938 (1184)
T 1i84_S 871 ERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEE 938 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555555555555555555555444443333332222 12233444444444444444433
No 18
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=98.03 E-value=9.9e-06 Score=69.72 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=49.3
Q ss_pred cchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHhhHHHHHHHHHhhhh
Q 001068 866 LRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGDICLL 941 (1166)
Q Consensus 866 lr~aai~IQs~~RG~~aRr~y~~l~~r~~AAi~IQ~~~R~~~aRk~~~~~r~aai~IQs~~Rg~laRr~~~~lr~~ 941 (1166)
+...++.||+.+||+++|+.|.+++.++.|+.+||+++|+|..+ |.|.+.+.|.+++++
T Consensus 3 l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l-----------------r~w~W~~L~~kikPL 61 (63)
T 2bl0_A 3 IGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEF-----------------KNWAWWKLFAKARPL 61 (63)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------TTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------------ccChHHHHHHHhhhc
Confidence 44678999999999999999999988888999999999999884 446666777776654
No 19
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.98 E-value=1.3e-05 Score=69.15 Aligned_cols=46 Identities=33% Similarity=0.429 Sum_probs=40.7
Q ss_pred ccchhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001068 865 ELRRGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQ 910 (1166)
Q Consensus 865 ~lr~aai~IQs~~RG~~aRr~y~~l~~r~~AAi~IQ~~~R~~~aRk 910 (1166)
++...++.||+.+||+++|+.|.+++.++.|+.+||+++|+|..++
T Consensus 4 ~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~ 49 (64)
T 1wdc_A 4 RLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456789999999999999999999888888999999999998854
No 20
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.70 E-value=0.0018 Score=81.91 Aligned_cols=51 Identities=25% Similarity=0.307 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc---hhhHHHHHHHHhhHHHHHHHHHhhhhh
Q 001068 892 RHRAAVVIQRQIKSRVARQKLKNI---KYSSIMIQSVIRGWLVRRCSGDICLLK 942 (1166)
Q Consensus 892 r~~AAi~IQ~~~R~~~aRk~~~~~---r~aai~IQs~~Rg~laRr~~~~lr~~~ 942 (1166)
...+|+.||+.||||++|++|.++ +.|++.||+.||+|++||.+.+++...
T Consensus 778 l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~w~~l~~ 831 (837)
T 1kk8_A 778 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWKLYS 831 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHh
Confidence 346799999999999999999998 679999999999999999887776543
No 21
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=96.45 E-value=0.0032 Score=54.10 Aligned_cols=47 Identities=28% Similarity=0.350 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc---hhhHHHHHHHHhhHHHHHHHHHhhh
Q 001068 894 RAAVVIQRQIKSRVARQKLKNI---KYSSIMIQSVIRGWLVRRCSGDICL 940 (1166)
Q Consensus 894 ~AAi~IQ~~~R~~~aRk~~~~~---r~aai~IQs~~Rg~laRr~~~~lr~ 940 (1166)
..++.||+.+||+++|+.|.++ +.|+..||..+|+|+.++.+...+.
T Consensus 7 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w~W~~l 56 (64)
T 1wdc_A 7 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWKL 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHH
Confidence 5689999999999999999999 7788899999999998876655443
No 22
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.36 E-value=0.0027 Score=54.43 Aligned_cols=48 Identities=23% Similarity=0.250 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc---hhhHHHHHHHHhhHHHHHHHHHhhhh
Q 001068 894 RAAVVIQRQIKSRVARQKLKNI---KYSSIMIQSVIRGWLVRRCSGDICLL 941 (1166)
Q Consensus 894 ~AAi~IQ~~~R~~~aRk~~~~~---r~aai~IQs~~Rg~laRr~~~~lr~~ 941 (1166)
..++.||+.+||+++|+.|.++ +.|+..||..+|+|+.++.+...+..
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w~W~~L~ 55 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNWAWWKLF 55 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 5678999999999999999999 77888999999999999987766544
No 23
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=95.47 E-value=0.057 Score=53.66 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhh
Q 001068 888 LVLQRHRAAVVIQRQIKSRVARQKLKNIKYS 918 (1166)
Q Consensus 888 ~l~~r~~AAi~IQ~~~R~~~aRk~~~~~r~a 918 (1166)
++..|..|++.||+.+|||++|+.|+....+
T Consensus 40 KI~yR~~~~i~iQktvR~~L~rkkhkPRi~g 70 (148)
T 3gn4_A 40 KIKYRAEACIKMQKTIRMWLCKRRHKPRIDG 70 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3444677888888888888888888776333
No 24
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.82 E-value=0.011 Score=59.76 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=27.7
Q ss_pred HHHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 248 m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.+..+....|+|+|++|+|||+.++.+.+.+..
T Consensus 37 ~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 37 VLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 344466789999999999999999999888765
No 25
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=94.78 E-value=0.49 Score=47.02 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=34.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHhhHHHHHHHHH
Q 001068 875 SFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGD 937 (1166)
Q Consensus 875 s~~RG~~aRr~y~~l~~r~~AAi~IQ~~~R~~~aRk~~~~~r~aai~IQs~~Rg~laRr~~~~ 937 (1166)
+-+..|+.|.++.+..--.-+++.+..-+ .| ...+++.||+.+|||++|+.++.
T Consensus 13 ~kV~~WLi~sRWrK~q~~~lsvIKLknKI-------~y--R~~~~i~iQktvR~~L~rkkhkP 66 (148)
T 3gn4_A 13 KRVNHWLICSRWKKVQWCSLSVIKLKNKI-------KY--RAEACIKMQKTIRMWLCKRRHKP 66 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH--HHHHHHHHHHHHHHHHHHHhhhh
Confidence 44566777777755442223344444332 12 23689999999999999998754
No 26
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.44 E-value=0.037 Score=55.69 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=27.8
Q ss_pred HHHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 248 m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.+.......|+|+|++|+|||+.++.+.+.+..
T Consensus 37 ~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 37 ILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp HHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred HHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 344566789999999999999999999888765
No 27
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.92 E-value=0.028 Score=58.56 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=23.9
Q ss_pred HHHHHcCceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 246 ~~m~~~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..|+.......|+|.|.||||||+.++.+...+
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 346666678899999999999999999998766
No 28
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.72 E-value=0.048 Score=56.77 Aligned_cols=31 Identities=32% Similarity=0.350 Sum_probs=27.3
Q ss_pred HHcCceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 249 ~~~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
+.......|+|.|.||||||+.++.+...|.
T Consensus 20 ~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 20 LLDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455678999999999999999999999886
No 29
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.45 E-value=0.033 Score=58.10 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=20.0
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 001068 257 IIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yL 278 (1166)
|||||.||||||+.++.+++-+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 9999999999999999988654
No 30
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.30 E-value=0.037 Score=58.14 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=26.9
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.+..+.|.|.|.||||||+.++.|...+..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 456789999999999999999999999874
No 31
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.83 E-value=0.044 Score=56.21 Aligned_cols=26 Identities=12% Similarity=0.377 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
..-|+|+|.||||||+.++.++..+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46799999999999999999988653
No 32
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.50 E-value=0.043 Score=56.55 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
..|+|+|.||||||+.++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999988764
No 33
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.48 E-value=0.053 Score=56.66 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
.+.|+|.|.||||||+..+.++..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46799999999999999999998764
No 34
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.45 E-value=0.11 Score=54.54 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=30.7
Q ss_pred HHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
....+......+.|+|+|++|+|||+.++.+.+.+..-
T Consensus 42 ~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 42 ALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp HHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34445555578999999999999999999999887753
No 35
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.44 E-value=0.072 Score=54.28 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=25.3
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
..+.|+|.|++|+|||+.++.+...+..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 64 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYE 64 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4688999999999999999999998873
No 36
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.29 E-value=0.057 Score=54.64 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+..|+|+|-||||||+.++.+-+.|
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999987765
No 37
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.28 E-value=0.062 Score=55.04 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=22.8
Q ss_pred HHHcCceEEEEEcCCCCCChhHHHHHHHH
Q 001068 248 MIRDEVNQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 248 m~~~~~~QsIiisGESGaGKTe~~K~il~ 276 (1166)
|..-.....|+|.|.||||||+.++.+..
T Consensus 3 m~~i~~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 3 MTDDLGGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp ---CCTTEEEEEEECTTSCHHHHHHHHHT
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence 45556678999999999999999998854
No 38
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.26 E-value=0.096 Score=54.25 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=24.5
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
+.|+|.|++|+|||+.++.+..++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 899999999999999999999888653
No 39
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.08 E-value=0.12 Score=56.59 Aligned_cols=37 Identities=22% Similarity=0.438 Sum_probs=30.1
Q ss_pred HHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
++..+. -...+.|+|+|+||||||++.+.++.++...
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 344444 4667899999999999999999999988654
No 40
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.78 E-value=0.087 Score=54.97 Aligned_cols=29 Identities=28% Similarity=0.263 Sum_probs=23.9
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
......|.|.|.||||||+.++.+...+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34567899999999999999999988763
No 41
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.65 E-value=0.078 Score=54.85 Aligned_cols=26 Identities=38% Similarity=0.461 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.|.|.|.||||||+.++++...+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35689999999999999999987764
No 42
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.64 E-value=0.067 Score=56.23 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
....-|+|+|.||||||+.++.++..+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 346789999999999999999987765
No 43
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.61 E-value=0.091 Score=52.51 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=21.3
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa 279 (1166)
-|+|+|.||||||+.++.+.+.|-
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999887763
No 44
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.54 E-value=0.09 Score=54.59 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yL 278 (1166)
--|+|+|.||||||+.++.+.+.|
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998876
No 45
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.53 E-value=0.097 Score=52.57 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
-|-|+|+|.+|||||+.++.+-+.|-
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 48999999999999999999887763
No 46
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.24 E-value=0.11 Score=54.06 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...|+|.|.||||||+.++.+.+.|
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999877
No 47
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.18 E-value=0.13 Score=51.91 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
....|+|.|.||||||+.++.+...+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999987765
No 48
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.16 E-value=0.078 Score=55.34 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...-|+|+|.||||||+.++.+.+.+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 46789999999999999999998776
No 49
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.07 E-value=0.11 Score=52.92 Aligned_cols=26 Identities=31% Similarity=0.673 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
+.-|+|+|.+|||||+.++.+-+.|.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999988775
No 50
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.99 E-value=0.17 Score=52.98 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=27.1
Q ss_pred HHcCceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 249 ~~~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
........|+|.|.+|||||+.++.+.++|.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4455678999999999999999999999886
No 51
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.94 E-value=0.098 Score=54.79 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..+.++..+
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 446789999999999999999998765
No 52
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.92 E-value=0.086 Score=54.53 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
....|+|.|.||||||+.++.+..++
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999987765
No 53
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=90.91 E-value=0.19 Score=36.62 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 001068 892 RHRAAVVIQRQIKSRVARQKLK 913 (1166)
Q Consensus 892 r~~AAi~IQ~~~R~~~aRk~~~ 913 (1166)
...||++||+.||+|+.|+...
T Consensus 5 Ee~aA~vIQrA~R~yl~rr~~~ 26 (31)
T 2l53_B 5 EEVSAMVIQRAFRRHLLQRSLK 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 4568888999988888876543
No 54
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.81 E-value=0.15 Score=53.18 Aligned_cols=32 Identities=31% Similarity=0.185 Sum_probs=27.2
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1166)
.....|.|+|.||||||+.++.+...|...++
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~ 51 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGI 51 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 45688999999999999999999998865443
No 55
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.79 E-value=0.13 Score=52.81 Aligned_cols=28 Identities=32% Similarity=0.340 Sum_probs=25.0
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
..|+|+|.||||||+.++.++..|...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g 34 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARG 34 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccC
Confidence 5789999999999999999999987654
No 56
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.71 E-value=0.1 Score=55.62 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
....|+|+|+||||||+..+.++..+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 457899999999999999999887653
No 57
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.64 E-value=0.15 Score=51.79 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=25.0
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
....|+|+|.+|||||+.++.+..+|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999998865
No 58
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=90.61 E-value=0.15 Score=36.08 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001068 892 RHRAAVVIQRQIKSRVARQK 911 (1166)
Q Consensus 892 r~~AAi~IQ~~~R~~~aRk~ 911 (1166)
...||++||+.||+|+.++.
T Consensus 5 Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45789999999999888653
No 59
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.58 E-value=0.12 Score=52.46 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
....|+|+|.||||||+.++.+.+.|
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998776
No 60
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.51 E-value=0.14 Score=51.01 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=25.4
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
..+.++|.|++|+|||+.++.+..++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999988764
No 61
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.40 E-value=0.2 Score=58.79 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=29.8
Q ss_pred HHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
++..++ ......|+|+|++|||||++.+.++.++..
T Consensus 158 ~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 158 NFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp HHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred HHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 566664 366788999999999999999999998754
No 62
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.35 E-value=0.16 Score=51.34 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=25.2
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|++|||||+.+|.+...+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 667899999999999999999999988
No 63
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.33 E-value=0.14 Score=53.83 Aligned_cols=27 Identities=15% Similarity=0.372 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
....|+|+|.||||||+.++.+++.+-
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 467899999999999999999988754
No 64
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.33 E-value=0.15 Score=51.97 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.+.-|+|+|.+|||||+.++.+.++|
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 35679999999999999999998876
No 65
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=90.31 E-value=0.14 Score=52.72 Aligned_cols=23 Identities=48% Similarity=0.692 Sum_probs=21.3
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1166)
.|.|.|++|||||+..|.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999887
No 66
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.29 E-value=0.21 Score=57.30 Aligned_cols=37 Identities=19% Similarity=0.426 Sum_probs=29.4
Q ss_pred HHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
.+..+.. .....|+|+|.||||||++.+.++.++..-
T Consensus 114 ~l~~l~~-~~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 114 VFKRVSD-VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp HHHHHHH-CSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 3445543 344599999999999999999999998765
No 67
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.29 E-value=0.22 Score=51.22 Aligned_cols=37 Identities=24% Similarity=0.350 Sum_probs=28.3
Q ss_pred HHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.....+..+....|+|+|++|+|||+.++.+.+.+..
T Consensus 28 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 28 RLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp HHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3344445555556999999999999999999888753
No 68
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.22 E-value=0.16 Score=56.46 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=26.6
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.+....|.|+|.||||||+.++.+..+|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 456789999999999999999999998864
No 69
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.18 E-value=0.13 Score=52.33 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.9
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 256 SIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
-|+|+|-+|||||+.++.+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5999999999999999999998864
No 70
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.05 E-value=0.11 Score=55.13 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|+||||||+..+.++..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998866
No 71
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=90.01 E-value=0.18 Score=51.78 Aligned_cols=28 Identities=18% Similarity=0.107 Sum_probs=24.8
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
..|.|+|.||||||+.+..++.+|...+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g 32 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREG 32 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcC
Confidence 4689999999999999999999998654
No 72
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.99 E-value=0.079 Score=54.39 Aligned_cols=27 Identities=30% Similarity=0.276 Sum_probs=24.7
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
+.|.|.|+||||||+.++.++.++...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 578899999999999999999999864
No 73
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=89.78 E-value=0.17 Score=54.45 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
+..|+|.|.+|||||+.++.+.+.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999999998873
No 74
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.73 E-value=0.16 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCChhHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~ 276 (1166)
...|+|+|+|||||||++..+++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999998887
No 75
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=89.65 E-value=0.15 Score=51.30 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..|+|+|.||||||+.++.+-..|
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999887654
No 76
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.64 E-value=0.19 Score=51.38 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=23.4
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 257 IIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
|+|+|-+|||||+.++.+.++|...+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g 28 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 89999999999999999999986543
No 77
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.63 E-value=0.33 Score=50.43 Aligned_cols=30 Identities=27% Similarity=0.501 Sum_probs=25.2
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.+.+..|+|+|++|+|||+.++.+.+.+..
T Consensus 42 ~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 42 GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp TCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344568999999999999999999887754
No 78
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=89.60 E-value=0.24 Score=55.42 Aligned_cols=45 Identities=22% Similarity=0.267 Sum_probs=32.6
Q ss_pred CchhHHHHHHHHHHHHcC--ceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 235 PHVYAITDTAIREMIRDE--VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 235 PHiyavA~~Ay~~m~~~~--~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
.|..+. .+.+.+.... ...+|+|+|++|+|||+.++.+.+++...
T Consensus 18 ~~~~a~--~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 18 GNRLAY--EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp TTHHHH--HHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred cHHHHH--HHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 454433 3344455443 46789999999999999999999988654
No 79
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=89.59 E-value=0.14 Score=50.85 Aligned_cols=19 Identities=47% Similarity=0.770 Sum_probs=17.8
Q ss_pred EEEEcCCCCCChhHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIA 274 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~i 274 (1166)
-|+|+|.+|||||+.++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999988
No 80
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=89.58 E-value=0.17 Score=56.13 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+..|||+|.||||||+.++.+.+.+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999998765
No 81
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.58 E-value=0.19 Score=51.13 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...|+|+|.+|||||+.++.+-+.|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998776
No 82
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=89.57 E-value=0.19 Score=51.47 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCChhHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~ 276 (1166)
+.|+|.|.||||||+.++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999865
No 83
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.51 E-value=0.24 Score=56.14 Aligned_cols=33 Identities=30% Similarity=0.334 Sum_probs=28.9
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1166)
..++..|.|.|+||||||++++.+..++...++
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g 158 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGF 158 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 456899999999999999999999999876554
No 84
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=89.28 E-value=0.23 Score=50.46 Aligned_cols=26 Identities=42% Similarity=0.512 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
....|+|+|.+|||||+.++.+.+.|
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998776
No 85
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.24 E-value=0.09 Score=54.78 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=23.3
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 256 SIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
-|+|.|.||||||+.++.+.++|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999999999998653
No 86
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=89.21 E-value=0.24 Score=55.68 Aligned_cols=31 Identities=29% Similarity=0.346 Sum_probs=26.8
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
-.....|.|.|.||||||+.++.|...+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 3567899999999999999999998887653
No 87
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=89.12 E-value=0.19 Score=51.58 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.7
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa 279 (1166)
-|+|.|.+|||||+.++.+.++|.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 489999999999999999988774
No 88
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.11 E-value=0.2 Score=50.17 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.9
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1166)
.|+|+|.+|||||+.++.+-+.|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999988766
No 89
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.09 E-value=0.31 Score=54.53 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=25.2
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
.....|-|+|.||||||+.++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5668899999999999999999988875
No 90
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=89.06 E-value=0.39 Score=52.21 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=24.6
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.....+|+|+|++|+|||+.++.+.+.+
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 5667899999999999999999887764
No 91
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.05 E-value=0.22 Score=57.46 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=27.2
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
-...+.|+|+|+||||||++.+.++.++...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 3457889999999999999999999998764
No 92
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=89.05 E-value=0.29 Score=49.99 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=26.2
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
...-|+|.|.+|||||+.++.+..+|...+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~ 41 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEG 41 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 457899999999999999999999987643
No 93
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=89.01 E-value=0.2 Score=52.63 Aligned_cols=25 Identities=40% Similarity=0.481 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+..|.|.|.||||||+.++.+...+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998866
No 94
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=88.99 E-value=0.24 Score=50.27 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=19.0
Q ss_pred ceEEEEEcCCCCCChhHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKI 273 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~ 273 (1166)
....+.|.|+||||||+.+|.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 457899999999999999997
No 95
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=88.99 E-value=0.21 Score=49.89 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=21.1
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1166)
.|+|+|.+|||||+.++.+-+.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998876
No 96
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=88.89 E-value=0.37 Score=58.50 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=26.8
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
.+.+.|+|.|.||||||+.++.|...|...+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~ 397 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMG 397 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTC
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccC
Confidence 3568899999999999999999998887544
No 97
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=88.46 E-value=0.23 Score=50.44 Aligned_cols=24 Identities=21% Similarity=0.410 Sum_probs=21.2
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa 279 (1166)
.|+|+|.+|||||+.++.+-+.|-
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 499999999999999999987663
No 98
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.42 E-value=0.31 Score=54.49 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=26.7
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1166)
....|.|.|++|||||++++.+..++..-+|
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g 129 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGT 129 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 4688999999999999999999988875443
No 99
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=88.28 E-value=0.27 Score=55.04 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=26.9
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1166)
..+.|.|.|.||||||++++.+..++..-++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g 131 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGK 131 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCC
Confidence 5689999999999999999999998876443
No 100
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=88.23 E-value=0.25 Score=49.99 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.8
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1166)
.|+|.|.+|||||+.++.+-+.|
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 49999999999999999997765
No 101
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.22 E-value=0.15 Score=54.47 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
.....|.|.|.+|||||+.++.+..+
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34689999999999999988887554
No 102
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.21 E-value=0.18 Score=53.65 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=16.7
Q ss_pred ceEEEEEcCCCCCChhHHHHHHH-HHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAM-QYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il-~yL 278 (1166)
..+.|.|+|.||||||+.++.+. ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35689999999999999999998 665
No 103
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=88.20 E-value=0.22 Score=50.55 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..-|+|+|.+|||||+.++.+.+.|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998876
No 104
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.14 E-value=0.25 Score=51.67 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.3
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 001068 257 IIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yL 278 (1166)
|+|+|.+|||||+.++.+.+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999997765
No 105
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=88.08 E-value=0.27 Score=49.40 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCChhHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~ 276 (1166)
..|+|+|.+|||||+.++.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5699999999999999999877
No 106
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=88.03 E-value=0.43 Score=54.14 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=29.0
Q ss_pred HHHHHHHHcCceE--EEEEcCCCCCChhHHHHHHHHHHH
Q 001068 243 TAIREMIRDEVNQ--SIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 243 ~Ay~~m~~~~~~Q--sIiisGESGaGKTe~~K~il~yLa 279 (1166)
.+.........+. +|+|+|++|+|||+.++.+.+.+.
T Consensus 31 ~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 31 ILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp HHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 3444555556667 999999999999999999887764
No 107
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=87.99 E-value=0.3 Score=52.44 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.....|-|+|.+|||||+.+|.+...|
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345788999999999999999998876
No 108
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=87.95 E-value=0.34 Score=54.69 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=32.9
Q ss_pred HHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
+.+..+..+.+-+|+|+|.+|+|||.+++.+++-|...
T Consensus 35 ~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 35 PIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp HHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 44556678899999999999999999999999999654
No 109
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=87.85 E-value=0.4 Score=54.42 Aligned_cols=40 Identities=30% Similarity=0.429 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 242 DTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 242 ~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
..+...+...+.+.+|+|+|++|+|||+.++.+.+.+...
T Consensus 33 ~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 33 AIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp HHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3455566667778899999999999999999999887543
No 110
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=87.84 E-value=0.59 Score=50.29 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+=-|+|+|.+|||||+.++.+.+.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456679999999999999999998876
No 111
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=87.83 E-value=0.27 Score=63.70 Aligned_cols=39 Identities=8% Similarity=-0.050 Sum_probs=23.9
Q ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001068 868 RGIVALQSFIRGEKIRKEYALVLQRHRAAVVIQRQIKSRVARQ 910 (1166)
Q Consensus 868 ~aai~IQs~~RG~~aRr~y~~l~~r~~AAi~IQ~~~R~~~aRk 910 (1166)
..++.|| .+|||++|++|.+++ ++|+.||+.+|++..|+
T Consensus 776 ~~~~~iq-~~r~~l~r~~~~k~~---~~a~~i~~~~r~~~~r~ 814 (1052)
T 4anj_A 776 HLAELVK-RVNHWLICSRWKKVQ---WCSLSVIKLKNKIKYRA 814 (1052)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4455555 467777777775543 56777777666655443
No 112
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=87.81 E-value=0.27 Score=50.03 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=22.8
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 256 SIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
-|+|+|-+|||||+.++.+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~ 27 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQK 27 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 38999999999999999999888543
No 113
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=87.76 E-value=0.21 Score=49.24 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~ 276 (1166)
..+..|+|.||+|+|||..++.+-+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHH
Confidence 4567799999999999999987643
No 114
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=87.71 E-value=0.27 Score=50.78 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
..-|+|.|-+|||||+.++.+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 457999999999999999999887743
No 115
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.65 E-value=0.49 Score=54.67 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=36.0
Q ss_pred CCchhHHHHHHHHHHHH-cCceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 234 SPHVYAITDTAIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 234 ~PHiyavA~~Ay~~m~~-~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
-|++......++..+.. -.....|+|.|.+|||||+.++.+...+
T Consensus 148 ~~~~~~~~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 148 LPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp STTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 36777777777777743 4567899999999999999999998754
No 116
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=87.59 E-value=0.38 Score=52.78 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+|+|.|++|+|||+.++.+.+.+
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998876
No 117
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=87.59 E-value=0.25 Score=50.60 Aligned_cols=26 Identities=23% Similarity=0.357 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
..-|+|+|.+|||||+.++.+.++|.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998874
No 118
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=87.45 E-value=0.26 Score=50.36 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...|+|+|.+|||||+.++.+-+.|
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998876
No 119
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=87.35 E-value=0.3 Score=50.44 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.9
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1166)
.|.|+|.+|||||+.++.+-+.|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68999999999999999987765
No 120
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=87.33 E-value=3.3 Score=35.58 Aligned_cols=47 Identities=13% Similarity=0.255 Sum_probs=41.0
Q ss_pred cCcEEEEecCCCCEEeEEEEEecCCeeEEEcCCCcEEEEeCCCcccC
Q 001068 118 KKLQSWFQLPNGNWELGKILSISGTESVISLPEGKVLKVKSENLVSA 164 (1166)
Q Consensus 118 ~~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~g~~~~v~~~~~~~~ 164 (1166)
.+..|.+...+|.|-+|+|+....+...|..+|..+..+...++...
T Consensus 18 ~geDVL~rw~DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv~~kdi~kl 64 (69)
T 2xk0_A 18 LQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQSEQWCEPDKLRKL 64 (69)
T ss_dssp TTCEEEEECTTSCEEEEEEEEECSSCEEEEETTCCEEEECTTTEECS
T ss_pred cCCeEEEEecCCCEEEEEEEecCCceEEEEecCCcceeeeHHHHHhh
Confidence 44589999999999999999988899999999999999988877654
No 121
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=87.32 E-value=0.27 Score=51.04 Aligned_cols=27 Identities=26% Similarity=0.535 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
..-|+|+|-+|||||+.++.+.++|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 457999999999999999999988764
No 122
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=87.30 E-value=0.27 Score=53.28 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
....|.|.|.||||||+.+|.+.+.|-
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456899999999999999999987653
No 123
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=87.04 E-value=0.37 Score=48.96 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+--|+|.|.+|||||+.++.+.+.|
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999988776
No 124
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.02 E-value=0.32 Score=54.57 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=28.5
Q ss_pred HHHHHH-HcCceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 244 AIREMI-RDEVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 244 Ay~~m~-~~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+.+.+- .-...+.|.|.|+||||||+.++.|+.++
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 444443 23567899999999999999999999998
No 125
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=86.94 E-value=0.21 Score=51.93 Aligned_cols=26 Identities=38% Similarity=0.291 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...-|.|+|.||||||+.++.+...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999886643
No 126
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=86.93 E-value=0.34 Score=52.64 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=25.1
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
..-|+|+|-+|||||+.++.+-++|...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g 32 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNN 32 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCC
Confidence 35799999999999999999999887543
No 127
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=86.90 E-value=0.26 Score=51.53 Aligned_cols=22 Identities=23% Similarity=0.438 Sum_probs=20.1
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 001068 257 IIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yL 278 (1166)
|+|+|.+|||||+.++.+.+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999987765
No 128
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=86.87 E-value=0.38 Score=50.21 Aligned_cols=30 Identities=27% Similarity=0.194 Sum_probs=25.5
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
..+.++|.|++|||||+.++.++..++..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~ 51 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDG 51 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 457899999999999999999997776544
No 129
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=86.86 E-value=0.43 Score=54.77 Aligned_cols=47 Identities=23% Similarity=0.319 Sum_probs=34.2
Q ss_pred chhHHHHHHHHHHHHc-----------CceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 236 HVYAITDTAIREMIRD-----------EVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 236 HiyavA~~Ay~~m~~~-----------~~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
.+..+.......++.. .....|.|.|++|||||++++.+..++..-+
T Consensus 128 ~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~ 185 (359)
T 2og2_A 128 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG 185 (359)
T ss_dssp HHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccC
Confidence 4555555555555432 2467899999999999999999999887544
No 130
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=86.81 E-value=0.15 Score=58.54 Aligned_cols=27 Identities=37% Similarity=0.601 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.+.|+|+|+||||||+..+.++.++-.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 468999999999999999999887654
No 131
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=86.76 E-value=0.33 Score=49.86 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
.++..|.|+|.+|||||+.++.+-+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999988764
No 132
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=86.69 E-value=0.38 Score=49.70 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=24.4
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+..|+|+|.+|||||+.++.+-++|
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455689999999999999999998877
No 133
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=86.68 E-value=0.25 Score=52.27 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+..-|+|.|-+|||||+.++.+.+.|
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34679999999999999999998765
No 134
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=86.61 E-value=0.37 Score=51.93 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.+..|+|.|++|+|||+.++.+...+
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 35679999999999999999987654
No 135
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=86.60 E-value=0.23 Score=50.20 Aligned_cols=25 Identities=40% Similarity=0.468 Sum_probs=17.6
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..-|+|+|.+|||||+.++.+-+.|
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999986654
No 136
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=86.58 E-value=7.4 Score=35.39 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=55.3
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001068 947 KGNDSDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKK 1026 (1166)
Q Consensus 947 ~~~~~~~l~~~~~~l~~Lq~r~~k~e~~l~ekeeen~~L~~eL~~~e~r~~E~e~~~~~~ee~lqkq~~~LQ~~l~~lk~ 1026 (1166)
..+..+++..+...+..++..+.+.+....+++..+..+.++...+..++.+.+++... +.++...|+..+..+..
T Consensus 9 ~~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~----L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 9 IARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEE----LLSKNYHLENEVARLKK 84 (89)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 34455677777788888888888888888888888888888877777665555555433 45556667777766666
Q ss_pred hcc
Q 001068 1027 SLA 1029 (1166)
Q Consensus 1027 ~Le 1029 (1166)
.++
T Consensus 85 rl~ 87 (89)
T 3bas_A 85 LVG 87 (89)
T ss_dssp HHT
T ss_pred Hhh
Confidence 554
No 137
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=86.55 E-value=0.31 Score=51.34 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.5
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
.-|+|.|.+|||||+.++.+.+.|-
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999988874
No 138
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=86.44 E-value=0.26 Score=54.78 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
.--|.|+|.||||||+.++.+.+.|-
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34689999999999999999988765
No 139
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=86.36 E-value=0.34 Score=50.42 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.9
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
+.|.|.|.+|||||++.+.+..++.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4588999999999999999999887
No 140
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=86.32 E-value=0.28 Score=52.76 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~ 276 (1166)
..+.+.|.|+||||||+..|.+.-
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 457899999999999999888753
No 141
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=86.27 E-value=0.48 Score=53.10 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=26.5
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
.+..|+|.|.+|||||++++.+..++...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g 132 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEG 132 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcC
Confidence 467899999999999999999999988654
No 142
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=86.24 E-value=0.33 Score=50.85 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
..+.+.|.|+||||||+.++.++-.+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 468999999999999999999876543
No 143
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=86.24 E-value=0.3 Score=52.90 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+..|+|+|.||||||+.++.+.+.|
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 446789999999999999999886654
No 144
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=86.23 E-value=0.4 Score=51.38 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+..|+|.|++|+|||+.++.+.+.+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999988765
No 145
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=86.15 E-value=0.54 Score=55.34 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCc-eEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 242 DTAIREMIRDEV-NQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 242 ~~Ay~~m~~~~~-~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
..+...+..... ..+++|.|++|+|||+.++.+..++...
T Consensus 117 ~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~ 157 (440)
T 2z4s_A 117 YHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN 157 (440)
T ss_dssp HHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 344445555433 7899999999999999999999888654
No 146
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=86.13 E-value=0.38 Score=49.92 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=25.2
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
++--|+|+|-+|||||+.++.+.+.|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45679999999999999999999888653
No 147
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=86.11 E-value=0.44 Score=50.56 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
..+.+.|.|++|||||+.++.++....
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 468899999999999999999985544
No 148
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=86.07 E-value=0.48 Score=56.49 Aligned_cols=49 Identities=20% Similarity=0.360 Sum_probs=38.1
Q ss_pred CchhHHHHHHHHHHHHc---------CceEEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 001068 235 PHVYAITDTAIREMIRD---------EVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1166)
Q Consensus 235 PHiyavA~~Ay~~m~~~---------~~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1166)
-.++.+-......++.. ...+.|.|.|.||||||++++.|..++..-+|
T Consensus 265 ~~~~~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G 322 (503)
T 2yhs_A 265 EALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGK 322 (503)
T ss_dssp GGHHHHHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCC
Confidence 35677766677666643 34689999999999999999999998876543
No 149
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=85.79 E-value=8.3 Score=37.47 Aligned_cols=74 Identities=23% Similarity=0.266 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcccccccc
Q 001068 962 AELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV---WQKQMRSLQSSLSIAKKSLAIDDSER 1035 (1166)
Q Consensus 962 ~~Lq~r~~k~e~~l~ekeeen~~L~~eL~~~e~r~~E~e~~~~~~ee~---lqkq~~~LQ~~l~~lk~~Le~~e~~r 1035 (1166)
..|+..+......+...++....|..+-..++..+.++++++..+++. +......++..+..+++.+++++..+
T Consensus 51 ~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~~l 127 (129)
T 2fxo_A 51 NDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTL 127 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333334445555555666666666666666666666665544 56677788888888888887766554
No 150
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=85.74 E-value=0.34 Score=52.75 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...|+|.|.||||||+.++.+.+.|
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998866
No 151
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=85.71 E-value=0.33 Score=58.36 Aligned_cols=29 Identities=34% Similarity=0.557 Sum_probs=23.7
Q ss_pred HHcCceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 249 ~~~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
+..+ +.|+|+|++|||||++.+.++.++.
T Consensus 257 v~~g--~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 257 IEHK--FSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp HHTT--CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HhCC--CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4444 4599999999999999999887763
No 152
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=85.69 E-value=0.28 Score=50.50 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+--|+|+|-+|||||+.++.+.+.|
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999988776
No 153
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=85.63 E-value=0.41 Score=48.95 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~y 277 (1166)
...|+|+|-+|||||+.++.+-+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999988776
No 154
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=85.61 E-value=0.7 Score=50.88 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=26.6
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
......|+|.|++|+|||+.++.+.+++...
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3456689999999999999999999988764
No 155
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=85.56 E-value=0.42 Score=49.32 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...-|+|+|-+|||||+.++.+.+.|
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34679999999999999999988765
No 156
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.32 E-value=0.61 Score=52.54 Aligned_cols=37 Identities=19% Similarity=0.352 Sum_probs=28.6
Q ss_pred HHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.....+..++-..++++|++|+|||+.++.+.+.|..
T Consensus 36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3444555555444999999999999999999998853
No 157
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=85.30 E-value=0.47 Score=50.27 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=25.5
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
..-|+|.|.+|||||+.++.+.++|...+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 34 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERG 34 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 45799999999999999999999997643
No 158
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=85.26 E-value=0.42 Score=51.82 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=20.5
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1166)
-|+|+|.+|||||+.++.+.+.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 48999999999999999987765
No 159
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=85.16 E-value=0.71 Score=50.92 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=28.0
Q ss_pred HHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 245 y~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
...++..+....++|+|++|+|||+.++.+.+.+.
T Consensus 37 l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 37 LKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp HHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 34455555555699999999999999999998874
No 160
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=85.13 E-value=0.93 Score=50.20 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+..|+|+|++|+|||+.++.+.+.+
T Consensus 36 ~~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 456889999999999999999998766
No 161
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=85.12 E-value=0.52 Score=51.96 Aligned_cols=27 Identities=37% Similarity=0.401 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
...|+|.|++|+|||+.++.+.+.+..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 468999999999999999999887753
No 162
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=85.10 E-value=0.51 Score=55.72 Aligned_cols=85 Identities=22% Similarity=0.264 Sum_probs=46.9
Q ss_pred HHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhccCCCCchhhhhhhhHHHHhhcCcccCCCCCCCccccEEEEE
Q 001068 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTSRNDNSSRFGKLIEIH 322 (1166)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~ie~~il~snpiLEAFGNAkT~~N~NSSRfGk~i~l~ 322 (1166)
...+.++..+.-.+|||.|++|+|||+.++.+.+.+..--. .+...-.....+-+.|..|.+.. .+|+..-|.
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~--~l~a~~~~~~~ir~~~~~a~~~~-----~~~~~~iLf 111 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVE--RISAVTSGVKEIREAIERARQNR-----NAGRRTILF 111 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEE--EEETTTCCHHHHHHHHHHHHHHH-----HTTCCEEEE
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeE--EEEeccCCHHHHHHHHHHHHHhh-----hcCCCcEEE
Confidence 35566666677789999999999999999999887632100 00000001122333343333321 145566777
Q ss_pred EcCCCceeccee
Q 001068 323 FSETGKISGANI 334 (1166)
Q Consensus 323 F~~~g~i~Ga~i 334 (1166)
+|+-+.+.....
T Consensus 112 IDEI~~l~~~~q 123 (447)
T 3pvs_A 112 VDEVHRFNKSQQ 123 (447)
T ss_dssp EETTTCC-----
T ss_pred EeChhhhCHHHH
Confidence 887777665443
No 163
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=85.08 E-value=0.67 Score=52.44 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=23.4
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
.+|+|+|++|+|||..++.+.+.+.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 7999999999999999999998875
No 164
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=85.06 E-value=0.31 Score=55.04 Aligned_cols=34 Identities=32% Similarity=0.491 Sum_probs=28.1
Q ss_pred HHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 248 m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
+...+..++|+|+|++|+|||+.++.+.+.+...
T Consensus 39 ~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 39 LYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp GGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3335678899999999999999999998877543
No 165
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=85.03 E-value=0.61 Score=52.58 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=27.3
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1166)
..+.|.|+|.+|+|||+++..+..+|+..++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~ 134 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGY 134 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 4678999999999999999999999987544
No 166
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=84.90 E-value=0.78 Score=55.59 Aligned_cols=49 Identities=18% Similarity=0.328 Sum_probs=34.1
Q ss_pred CCCCchhH---HHHHHHHHHH-HcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 232 IESPHVYA---ITDTAIREMI-RDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 232 ~~~PHiya---vA~~Ay~~m~-~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
..+||-|. |+......+. .......|+|+|-+|||||+.++.+-+.|..
T Consensus 346 ~~~p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 346 RKLPEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 34577766 5533333321 2334578999999999999999999888764
No 167
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=84.86 E-value=0.34 Score=54.83 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=26.6
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.+...+|+|+|++|+|||+.++.+.+.+..
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 467789999999999999999999888754
No 168
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=84.73 E-value=0.43 Score=49.98 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.8
Q ss_pred EEEcCCCCCChhHHHHHHHHHH
Q 001068 257 IIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yL 278 (1166)
|+|+|.+|||||+.++.+.+.|
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998876
No 169
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=84.73 E-value=0.41 Score=53.83 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~y 277 (1166)
=..++|+|.||||||+..++++..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 357899999999999999988765
No 170
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=84.59 E-value=0.41 Score=51.42 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+..|+|.|++|+|||+.++.+...+
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4559999999999999999988765
No 171
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=84.57 E-value=0.48 Score=51.02 Aligned_cols=26 Identities=19% Similarity=0.403 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
+-.|.|.|.||||||+.++.+.+.|-
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999988763
No 172
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=84.46 E-value=0.4 Score=50.23 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCChhHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~ 276 (1166)
+--|+|+|.+|||||+.++.+-.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988755
No 173
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=84.37 E-value=0.41 Score=49.59 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=18.7
Q ss_pred EEEEcCCCCCChhHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~ 276 (1166)
.|.|+|.+|||||+.++.+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999988865
No 174
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=84.22 E-value=0.38 Score=49.73 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.4
Q ss_pred EEEEcCCCCCChhHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~ 276 (1166)
.|.|+|.+|||||+.++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 489999999999999999877
No 175
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=84.12 E-value=0.47 Score=52.13 Aligned_cols=26 Identities=23% Similarity=0.334 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.+.+|+|.|++|+|||+.++.+...+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 46899999999999999999887654
No 176
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=84.06 E-value=0.52 Score=49.86 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=21.1
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1166)
-|+|.|.+|||||+.++.+.++|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999998877
No 177
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.02 E-value=0.43 Score=53.77 Aligned_cols=37 Identities=11% Similarity=0.275 Sum_probs=26.5
Q ss_pred HHHHHH-HcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 244 AIREMI-RDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 244 Ay~~m~-~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
+.+..+ ..++...++|+|++|+|||+.++.+...|..
T Consensus 25 ~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~ 62 (354)
T 1sxj_E 25 FLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62 (354)
T ss_dssp HHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSC
T ss_pred HHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 333444 3343333999999999999999999886643
No 178
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=83.96 E-value=0.85 Score=55.59 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=26.5
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
......|+|+|-||||||+.++.+-+.|...
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~ 423 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQ 423 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhccc
Confidence 4456789999999999999999998888753
No 179
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=83.92 E-value=0.46 Score=56.97 Aligned_cols=45 Identities=11% Similarity=0.095 Sum_probs=35.4
Q ss_pred CCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 234 SPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 234 ~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.|+|..+...+|..-. +....|+|+|-||||||+.++.+-+.|..
T Consensus 377 rpeV~~vLr~~~~~~~--~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 377 YPEVVKILRESNPPRP--KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CHHHHHHHHHHSCCGG--GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHhccccc--ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3778777777763322 33478999999999999999999999876
No 180
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=83.77 E-value=0.6 Score=50.42 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.+..|+|.||+|+|||+.++.+-+++
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 35789999999999999998886654
No 181
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=83.61 E-value=0.56 Score=49.70 Aligned_cols=28 Identities=39% Similarity=0.666 Sum_probs=24.8
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
--|+|.|.+|||||+.++.+.++|...+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 4699999999999999999999997643
No 182
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=83.58 E-value=0.49 Score=51.06 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
...+.+.|.|+||||||+..|.+.-.+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3468899999999999999998865543
No 183
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=83.52 E-value=0.23 Score=48.79 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=19.1
Q ss_pred ceEEEEEcCCCCCChhHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il 275 (1166)
.+..|+|.||+|+|||..++.+-
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGC
T ss_pred CCCcEEEECCCCccHHHHHHHHH
Confidence 45679999999999998877653
No 184
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.52 E-value=0.64 Score=52.06 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=28.2
Q ss_pred HHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
....++..+....++|+|++|+|||+.++.+.+.+..
T Consensus 48 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 84 (353)
T 1sxj_D 48 VLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYG 84 (353)
T ss_dssp HHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444455554345999999999999999999988753
No 185
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=83.47 E-value=0.45 Score=51.18 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|+||||||+..|.+.-.+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46789999999999999999886544
No 186
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=83.41 E-value=0.58 Score=51.46 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=27.3
Q ss_pred HHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 245 y~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
...++..+....++|+|++|+|||+.++.+.+.+.
T Consensus 29 l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 29 LKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp HHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc
Confidence 33444445545699999999999999999998874
No 187
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=83.40 E-value=0.44 Score=51.66 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|+||||||+..|.++-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3578899999999999999988544
No 188
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=83.36 E-value=0.63 Score=48.85 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.--|+|.|-+|||||+.++.+-+.|
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4569999999999999999998876
No 189
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=83.32 E-value=0.72 Score=49.27 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=25.2
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
...-|+|.|.+|||||+.++.+.++|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999999875
No 190
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=83.29 E-value=0.59 Score=50.42 Aligned_cols=29 Identities=31% Similarity=0.541 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
..-|+|.|.+|||||+.++.+.++|...+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~ 55 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNG 55 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 46899999999999999999999997644
No 191
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=83.27 E-value=0.71 Score=52.14 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
+--|-|+|.||||||+.++.+...|..
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 347889999999999999999888764
No 192
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=83.26 E-value=0.46 Score=51.87 Aligned_cols=27 Identities=22% Similarity=0.503 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..|.++-.+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 346889999999999999999986543
No 193
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=83.24 E-value=0.73 Score=48.58 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=25.2
Q ss_pred HHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
++..+ ...+.+.|.|+||||||+..|.+.-.
T Consensus 15 ~l~~i---~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 15 YVDAI---DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHH---HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred HHHhc---cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45554 34678999999999999999999876
No 194
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=83.20 E-value=0.54 Score=50.74 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+.+.|.|+||||||+..|.+.-.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 778899999999999999886543
No 195
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=83.17 E-value=1.1 Score=50.67 Aligned_cols=30 Identities=27% Similarity=0.501 Sum_probs=25.7
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.+.+.+++|+|++|+|||+.++.+.+.+..
T Consensus 35 ~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 35 GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp TCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 444678999999999999999999888754
No 196
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=83.11 E-value=1.2 Score=55.81 Aligned_cols=66 Identities=14% Similarity=0.140 Sum_probs=42.3
Q ss_pred CCCCCCCHHHHHHhhcCCCCC-CchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 214 KKVPLYGNYYIEAYKSKSIES-PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 214 k~l~iY~~~~~~~y~~~~~~~-PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
..+.-|+.+....|+....++ ..-=.... ....++..+....++|.|++|+|||+.++.+.+.+..
T Consensus 167 ~~l~~~~~~l~~~~~~~~~d~~iGr~~~i~-~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 167 ERLENFTTNLNQLARVGGIDPLIGREKELE-RAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp --CCSSSCBHHHHHHTTCSCCCCSCHHHHH-HHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHhHhHHHHHhcCCCCCccCCHHHHH-HHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 345567777777777654442 10001111 2233445567788999999999999999999988754
No 197
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=83.03 E-value=0.62 Score=50.22 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
..--|.|+|.+|||||+.++.+-+.|.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345799999999999999998877654
No 198
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=82.92 E-value=1 Score=50.68 Aligned_cols=27 Identities=37% Similarity=0.548 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.....++|.|++|+|||+.++.+...+
T Consensus 49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 49 EVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345789999999999999999999887
No 199
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=82.88 E-value=0.94 Score=48.16 Aligned_cols=41 Identities=22% Similarity=0.367 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHH-HHHHh
Q 001068 237 VYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAM-QYLAA 280 (1166)
Q Consensus 237 iyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il-~yLa~ 280 (1166)
+|.+-..++..+.. ++.++|+|++|||||+....++ ..+..
T Consensus 62 ~~~~q~~~i~~i~~---g~~~~i~g~TGsGKTt~~~~~~~~~~~~ 103 (235)
T 3llm_A 62 VKKFESEILEAISQ---NSVVIIRGATGCGKTTQVPQFILDDFIQ 103 (235)
T ss_dssp GGGGHHHHHHHHHH---CSEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhc---CCEEEEEeCCCCCcHHhHHHHHhcchhh
Confidence 34455556655544 4789999999999998776654 44433
No 200
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=82.85 E-value=0.57 Score=51.02 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+..|+|.|++|+|||+.++.+.+.+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456789999999999999999886654
No 201
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=82.82 E-value=0.55 Score=50.90 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|+||||||+..|.++-.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578899999999999999988654
No 202
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=82.52 E-value=14 Score=34.65 Aligned_cols=69 Identities=23% Similarity=0.298 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhh
Q 001068 961 LAELQRRVLKAEAALREKEEENDILHQRLQQYES----------RWSEYEQKMKSM---EEVWQKQMRSLQSSLSIAKKS 1027 (1166)
Q Consensus 961 l~~Lq~r~~k~e~~l~ekeeen~~L~~eL~~~e~----------r~~E~e~~~~~~---ee~lqkq~~~LQ~~l~~lk~~ 1027 (1166)
+..|..++..+|+.+..+..+.+.|++++.+.+. +..-|..--... .|.+..++..|+.+++.++..
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554444333 222222211111 133455566666666666655
Q ss_pred cc
Q 001068 1028 LA 1029 (1166)
Q Consensus 1028 Le 1029 (1166)
+.
T Consensus 106 ~~ 107 (110)
T 2v4h_A 106 FN 107 (110)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 203
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=82.51 E-value=0.6 Score=52.52 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~y 277 (1166)
...|+|+|+||+|||+++..+++.
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 479999999999999999988874
No 204
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=82.49 E-value=0.6 Score=51.21 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|+||||||+..|.+.-.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999988654
No 205
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=82.48 E-value=0.52 Score=51.84 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|+||||||+..|.|+-.+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46889999999999999999886554
No 206
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=82.38 E-value=0.6 Score=51.82 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+..|+|.|++|+|||..++.+...+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456789999999999999999887654
No 207
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=82.37 E-value=0.59 Score=51.08 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+..|+|.|++|+|||+.++.+...+
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCcChHHHHHHHHHHHc
Confidence 3459999999999999999988765
No 208
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=82.35 E-value=0.52 Score=51.51 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|+||||||+..|.+.-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578899999999999999887443
No 209
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=82.30 E-value=1.4 Score=52.11 Aligned_cols=62 Identities=18% Similarity=0.189 Sum_probs=38.0
Q ss_pred CCCHHHHHHhhcCCCCC-CchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 218 LYGNYYIEAYKSKSIES-PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 218 iY~~~~~~~y~~~~~~~-PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
-|+.+....|+....++ -.-=..-.. ...++..+....++|.|++|.|||..++.+.+.+..
T Consensus 165 ~~~~~l~~~~r~~~ld~iiGr~~~i~~-l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 165 SLARDLTAIAKEDSLDPVIGRSKEIQR-VIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SSCCBHHHHTTSSCSCCCCCCHHHHHH-HHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCCCccCcHHHHHH-HHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 45555566665444332 000011112 223344456678999999999999999999998854
No 210
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=82.29 E-value=0.53 Score=52.87 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCChhHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~ 276 (1166)
...|+|+|+||+||||++-.+++
T Consensus 147 g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 57899999999999999977665
No 211
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=82.29 E-value=0.49 Score=52.24 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|+||||||+..|.+.-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3578899999999999999988543
No 212
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=82.29 E-value=0.59 Score=50.11 Aligned_cols=29 Identities=28% Similarity=0.266 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
+.--|+|.|.+|||||+.++.+.++|...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 35679999999999999999999998753
No 213
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=82.24 E-value=0.51 Score=51.80 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|+||||||+..|.+.-.+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 35788999999999999999886544
No 214
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=82.07 E-value=0.55 Score=51.48 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|+||||||+..|.+.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 4678999999999999999987543
No 215
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=81.96 E-value=0.53 Score=50.17 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCCChhHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il 275 (1166)
..+.+.|.|+||||||+..|.+.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 35678899999999999988874
No 216
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=81.80 E-value=0.28 Score=55.54 Aligned_cols=27 Identities=30% Similarity=0.642 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.+.|+|+|+||||||+..+.++.++..
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 468999999999999999999887654
No 217
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=81.73 E-value=9 Score=37.74 Aligned_cols=67 Identities=12% Similarity=0.133 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001068 958 ASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSL 1028 (1166)
Q Consensus 958 ~~~l~~Lq~r~~k~e~~l~ekeeen~~L~~eL~~~e~r~~E~e~~~~~~ee~lqkq~~~LQ~~l~~lk~~L 1028 (1166)
..++.+++.+...++..+.++.+++..|..++...+.+..+.+....++ ++++..|+.++..++.++
T Consensus 67 adEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l----~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKEL----KSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 4455566666677777777777777777777777666666555544333 334444444444444433
No 218
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=81.71 E-value=0.89 Score=47.99 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=24.8
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
....++|.|++|||||+.+..++..++..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~ 51 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMG 51 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 357899999999999999888877776544
No 219
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=81.61 E-value=0.63 Score=51.11 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=21.4
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 256 SIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
.|.|.|+||||||+..+.++..+...+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~ 30 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRK 30 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 578999999999999999988765433
No 220
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.53 E-value=1.1 Score=49.25 Aligned_cols=35 Identities=29% Similarity=0.436 Sum_probs=27.1
Q ss_pred HHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 245 IREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 245 y~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
...++..+....++|+|++|+|||+.++.+.+.+.
T Consensus 33 l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 33 LQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp HHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 34445555444499999999999999999998874
No 221
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=81.43 E-value=1 Score=48.11 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=26.2
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
..+..-|+|.|-+|||||+.++.+.++|..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345678999999999999999999999876
No 222
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=81.38 E-value=0.58 Score=50.97 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|+||||||+..|.+.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578899999999999999988544
No 223
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=81.30 E-value=0.5 Score=50.17 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|+||||||+..|.+.-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3567889999999999999987543
No 224
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=81.18 E-value=0.48 Score=51.20 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.+..|+|.|++|+|||+.++.+.+.+
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 35679999999999999999987765
No 225
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=81.17 E-value=0.59 Score=49.94 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|+||||||+..|.++-.+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45788999999999999999886544
No 226
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=81.16 E-value=1 Score=50.43 Aligned_cols=28 Identities=36% Similarity=0.482 Sum_probs=23.1
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.....+|+|+|++|+|||+.++.+.+.+
T Consensus 52 ~~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 52 NECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp TSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 3456789999999999999999886553
No 227
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=81.15 E-value=0.62 Score=51.02 Aligned_cols=24 Identities=21% Similarity=0.548 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~ 276 (1166)
..+.+.|.|+||||||+..|.+.-
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 457889999999999999988743
No 228
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=81.11 E-value=0.79 Score=51.48 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=23.2
Q ss_pred HHHcCceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 248 MIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 248 m~~~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
|.....+.-|+|+|.||||||+.+..+.+.+
T Consensus 4 ~~~~~~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 4 ISKASLPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp ---CCCCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cccCCCCcEEEEECCCccCHHHHHHHHHHhC
Confidence 4445556789999999999999988876653
No 229
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=81.08 E-value=0.77 Score=51.13 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=25.8
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
...+.|+|.|.+|||||+++..+..+++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35678999999999999999999998875
No 230
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=81.04 E-value=0.88 Score=50.11 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=25.2
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
...+.++|.|++|||||+.++.+.-.++.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999877764
No 231
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=81.02 E-value=0.63 Score=50.77 Aligned_cols=24 Identities=33% Similarity=0.417 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~ 276 (1166)
..+.+.|.|+||||||+..|.+.-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 457889999999999999988743
No 232
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=80.83 E-value=0.79 Score=52.79 Aligned_cols=30 Identities=33% Similarity=0.346 Sum_probs=25.3
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
.+..++|.|.||||||+.+|.++..+...+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~ 63 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQG 63 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 577899999999999999999987766443
No 233
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=80.71 E-value=0.87 Score=52.04 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.+.+|+|.|++|+|||+.++.+-+.+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999887765
No 234
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=80.63 E-value=0.75 Score=48.43 Aligned_cols=26 Identities=38% Similarity=0.512 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
...|+|+|.||||||+.+..+.+.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 57899999999999999888776543
No 235
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=80.62 E-value=0.76 Score=48.25 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..|+|.|-+|||||+.++.+-+.|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998877
No 236
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=80.60 E-value=0.87 Score=47.37 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...--|.|+|-+|||||+.++.+-+.|
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 345678899999999999999998875
No 237
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=80.46 E-value=0.78 Score=47.59 Aligned_cols=25 Identities=20% Similarity=0.060 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~ 276 (1166)
...+.++|.|++|||||+.++.++.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999998865
No 238
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=80.44 E-value=0.75 Score=53.11 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|+||||||+..|.|.-.+
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 45788999999999999999886443
No 239
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=80.40 E-value=0.86 Score=48.38 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
..-|+|.|-+|||||+.++.+-++|.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999988763
No 240
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=80.38 E-value=1.7 Score=50.95 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=27.3
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1166)
.+..|+++|.+|||||+++..+..+|+..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~ 126 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGY 126 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 3678999999999999999999999987543
No 241
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=80.36 E-value=0.66 Score=49.96 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|+||||||+..|.+.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3577889999999999999887544
No 242
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=80.31 E-value=1.7 Score=49.66 Aligned_cols=41 Identities=22% Similarity=0.406 Sum_probs=30.5
Q ss_pred HHHHHHHHHHH---HcCceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 239 AITDTAIREMI---RDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 239 avA~~Ay~~m~---~~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
.+++.+...+. ..++-.+|+|.|.+|||||+.++.+...|.
T Consensus 6 ~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 6 KLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 45566655543 345556799999999999999998877654
No 243
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=80.22 E-value=1.4 Score=50.23 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=27.8
Q ss_pred HHHHHc--CceEEEEE--cCCCCCChhHHHHHHHHHHHh
Q 001068 246 REMIRD--EVNQSIII--SGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 246 ~~m~~~--~~~QsIii--sGESGaGKTe~~K~il~yLa~ 280 (1166)
..+... ...+.++| +|++|.|||+.++.+.+.+..
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 444444 56789999 999999999999988776543
No 244
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=80.19 E-value=1.2 Score=49.62 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=27.1
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1166)
..+.|.|+|.+|+|||+++..+..+++..++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~ 127 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR 127 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 4678999999999999999999999987554
No 245
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=80.18 E-value=10 Score=54.67 Aligned_cols=74 Identities=11% Similarity=0.092 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 001068 958 ASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAID 1031 (1166)
Q Consensus 958 ~~~l~~Lq~r~~k~e~~l~ekeeen~~L~~eL~~~e~r~~E~e~~~~~~ee~lqkq~~~LQ~~l~~lk~~Le~~ 1031 (1166)
...+++++.++...+..+.++.++.+++-+++...++...+.++.+.+.+++.+++.+..+...+.+++.|+++
T Consensus 1933 ~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A 2006 (3245)
T 3vkg_A 1933 EAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKA 2006 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44556666666666666666666666666666555544444444455555556666666666666666666553
No 246
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=80.11 E-value=14 Score=35.92 Aligned_cols=52 Identities=23% Similarity=0.285 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 001068 952 DEVLVKASFLAELQRRVLKAEAALREKEE-------ENDILHQRLQQYESRWSEYEQKM 1003 (1166)
Q Consensus 952 ~~l~~~~~~l~~Lq~r~~k~e~~l~ekee-------en~~L~~eL~~~e~r~~E~e~~~ 1003 (1166)
+++..+...+..++..+.+.+....+++. +...|..+++.....+.+.+++.
T Consensus 13 ~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~ 71 (129)
T 2fxo_A 13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERC 71 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33444444455555555444444444444 44444444444444444444443
No 247
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=80.04 E-value=0.76 Score=51.46 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
....|+|.|++|+|||+.++.+.+.+.
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 345699999999999999998877553
No 248
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=79.80 E-value=12 Score=40.58 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhHHHhhhHHHHHHHhhh
Q 001068 1112 KELRRLKQMFEAWKKDYGSRLRETKVILNKL 1142 (1166)
Q Consensus 1112 ~El~~Lk~~f~~wkkd~~~rlr~~k~~l~~~ 1142 (1166)
.++..++..++.-+..+.+.+-+++..+..+
T Consensus 132 ~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l 162 (256)
T 3na7_A 132 KEMLELEKLALELESLVENEVKNIKETQQII 162 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777666666544
No 249
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=79.76 E-value=0.35 Score=54.29 Aligned_cols=28 Identities=25% Similarity=0.519 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
...+.+.|.|+||||||+..|.++.++.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 3468899999999999999999876653
No 250
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=79.67 E-value=1.7 Score=48.94 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=27.4
Q ss_pred HcCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 250 RDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 250 ~~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
..+-+.+++++|+.|.|||+.++.+.+.|...
T Consensus 20 ~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 20 AGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred cCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 34557899999999999999999999988653
No 251
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=79.59 E-value=1.6 Score=48.67 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHH-hcc
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLA-ALG 282 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa-~~~ 282 (1166)
.+.|+|.|++|+|||..+..+...+. ..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g 181 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKG 181 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999999888 543
No 252
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=79.58 E-value=1 Score=51.31 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.+..|+|.|++|+|||+.++.+-+.+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999987765
No 253
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=79.49 E-value=0.72 Score=50.14 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|+||||||+..|.+.-.+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35778999999999999998875443
No 254
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=79.38 E-value=0.88 Score=48.35 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
..-|+|.|.+|||||+.++.+.++|.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46799999999999999999988874
No 255
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=79.37 E-value=0.73 Score=50.00 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|+||||||+..|.+.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4567899999999999999987544
No 256
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=79.29 E-value=0.73 Score=50.88 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|+||||||+..|.++-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3578899999999999999887544
No 257
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=79.06 E-value=1.2 Score=47.50 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.....|.|+|.+|||||+.++.+...|
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999987755
No 258
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=78.84 E-value=0.87 Score=51.77 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
--|+|+|.||||||+.++.+.+.|-
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999887663
No 259
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=78.82 E-value=2.2 Score=47.35 Aligned_cols=52 Identities=19% Similarity=0.325 Sum_probs=34.5
Q ss_pred HHHHhhcCCCC----CCchhHHHHHHHHHHHH-cCceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 223 YIEAYKSKSIE----SPHVYAITDTAIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 223 ~~~~y~~~~~~----~PHiyavA~~Ay~~m~~-~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
....|+-.... ..|+. ...+.++. .+.+..+++.|++|+|||+.++.+.+.+
T Consensus 16 ~~~k~rP~~~~~ivg~~~~~----~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 16 LEQKYRPSTIDECILPAFDK----ETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp HHHHSCCCSTTTSCCCHHHH----HHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHHhhCCCCHHHHhCcHHHH----HHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 35667654433 23432 33444444 3446788999999999999999998776
No 260
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=78.81 E-value=0.83 Score=50.95 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+..|+|.||+|+|||..++.+-+++
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 456789999999999999998887654
No 261
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=78.69 E-value=0.9 Score=47.91 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.++|.|++|||||+.++.++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4578999999999999999887643
No 262
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=78.52 E-value=1.1 Score=49.32 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCChhHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~y 277 (1166)
..|+|+|-||||||+.++.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999998763
No 263
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=78.19 E-value=0.88 Score=51.98 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.+.+.|.|+||||||+.++.+..++..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 578999999999999999999887654
No 264
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=78.11 E-value=0.82 Score=50.07 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~y 277 (1166)
.+.+.|.|+||||||+..|.+.-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 567899999999999999988543
No 265
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=78.10 E-value=0.9 Score=52.06 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|+||||||+..|.|.-.+
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 35778999999999999988886443
No 266
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=78.00 E-value=29 Score=34.52 Aligned_cols=68 Identities=9% Similarity=0.109 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001068 953 EVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSS 1020 (1166)
Q Consensus 953 ~l~~~~~~l~~Lq~r~~k~e~~l~ekeeen~~L~~eL~~~e~r~~E~e~~~~~~ee~lqkq~~~LQ~~ 1020 (1166)
.+.....++..++.++..++..+.++.+.+..++.++..+..+....+.++..++++-+.-+..|-..
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~r 136 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKK 136 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888888888888888888888899999999988888888888888877655555544433
No 267
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=77.86 E-value=0.97 Score=48.19 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
+.-|+|.|-+|||||+.++.+.++|.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45699999999999999999988873
No 268
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=77.83 E-value=1 Score=47.03 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+..|+|+|.+|||||+.++.+-+.|
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3469999999999999999887654
No 269
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=77.78 E-value=2.1 Score=50.36 Aligned_cols=30 Identities=27% Similarity=0.445 Sum_probs=26.9
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
.+..|+++|.+|+|||+++-.+..||+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G 128 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRG 128 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCC
Confidence 468899999999999999999999998754
No 270
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=77.76 E-value=1 Score=51.70 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~ 276 (1166)
+.+.+.|.|+||||||+..|.+.-
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhc
Confidence 457889999999999999888754
No 271
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=77.52 E-value=1.1 Score=51.49 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|+||||||+..|.|.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCC
Confidence 4578899999999999999888544
No 272
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=77.43 E-value=1 Score=45.47 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+|.|++|||||+..+.|.--|
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 377999999999999988765444
No 273
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=77.42 E-value=1.2 Score=49.81 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.+..|+|.|++|+|||..++.+.+.+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 35789999999999999999887764
No 274
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=77.33 E-value=1.1 Score=49.47 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+.+-.|+|.|++|+|||..++.+-+.+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 446789999999999999999998877
No 275
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=77.22 E-value=0.87 Score=50.62 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|+||||||+..|.++-.+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45788999999999999999886544
No 276
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=77.17 E-value=1.1 Score=51.06 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+|+|.|++|+|||..++.+.+.+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456799999999999999999886553
No 277
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=76.94 E-value=19 Score=38.89 Aligned_cols=77 Identities=12% Similarity=0.117 Sum_probs=47.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001068 950 DSDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKK 1026 (1166)
Q Consensus 950 ~~~~l~~~~~~l~~Lq~r~~k~e~~l~ekeeen~~L~~eL~~~e~r~~E~e~~~~~~ee~lqkq~~~LQ~~l~~lk~ 1026 (1166)
..+++.....++..++.+...++..+.++.+....++..+...+.++.+.+..+.....++...+..++.+++.+..
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~ 164 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFK 164 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556566666666666666666666666666666666666666666666666666665555555555555555443
No 278
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=76.88 E-value=2.5 Score=53.13 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=26.7
Q ss_pred HHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 249 ~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
+..+..-.|||.|++|+|||..++.+.+.+..
T Consensus 196 l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 196 LSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp HHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred HhCCCCCCeEEECCCCCCHHHHHHHHHHHHhc
Confidence 34455667999999999999999999998854
No 279
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=76.80 E-value=1.3 Score=46.55 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.9
Q ss_pred EEEcCCCCCChhHHHHHHHHHHH
Q 001068 257 IIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa 279 (1166)
|||.|..|||||+-++.|.+.+-
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 88999999999999999988763
No 280
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=76.79 E-value=1.1 Score=51.30 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|+||||||+..|.|.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 4578899999999999999887543
No 281
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=76.78 E-value=1.1 Score=49.18 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+..|+|.|++|+|||+.+|.+...+
T Consensus 44 ~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHc
Confidence 3449999999999999999987654
No 282
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=76.76 E-value=1.6 Score=51.21 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=27.2
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1166)
....|+|.|.+|||||+++..+..+|+..++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~ 127 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR 127 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 4688999999999999999999999986543
No 283
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=76.64 E-value=13 Score=37.69 Aligned_cols=18 Identities=22% Similarity=0.219 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhHHH
Q 001068 1112 KELRRLKQMFEAWKKDYG 1129 (1166)
Q Consensus 1112 ~El~~Lk~~f~~wkkd~~ 1129 (1166)
-||+.|.++.+-=-+..+
T Consensus 143 ~eLKalQ~~~eqE~~~H~ 160 (168)
T 3o0z_A 143 YKLKSLQQRLEQEVNEHK 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467777777766555554
No 284
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=76.52 E-value=1.3 Score=48.64 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~ 276 (1166)
..--|+|+|-+|||||+.++.+-+
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 285
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=76.35 E-value=0.98 Score=50.83 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yL 278 (1166)
--|+|+|.||||||+.+..+.+.+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 468999999999999988876654
No 286
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=76.29 E-value=1.2 Score=51.09 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|+||||||+..|.|.-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3578899999999999999887543
No 287
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=76.13 E-value=1.2 Score=51.26 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|+||||||+..|.|.-.+
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 45788999999999999998875443
No 288
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=76.11 E-value=2.3 Score=44.29 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=26.8
Q ss_pred HHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 246 REMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 246 ~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
+.+......--|+|.|.+|+|||+.+..++..+.
T Consensus 30 r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 30 RKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3444455667899999999999999998887764
No 289
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=75.82 E-value=1.3 Score=48.37 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
..+.++|.|++|||||+.+++++-.++
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999987554
No 290
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=75.66 E-value=1.6 Score=52.81 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=25.1
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
......++|.|++|+|||+.++.+-..+.
T Consensus 105 ~~~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 105 SLKGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp SCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34577899999999999999999988873
No 291
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=75.64 E-value=3.7 Score=41.99 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=35.5
Q ss_pred CCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHH
Q 001068 212 PFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI 273 (1166)
Q Consensus 212 P~k~l~iY~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~ 273 (1166)
.|..+++ +++..+.....+...|-.|. ..|+..++.. +.+++.+++|||||.+.-.
T Consensus 4 ~f~~~~l-~~~l~~~l~~~g~~~~~~~Q--~~~i~~~~~~---~~~lv~apTGsGKT~~~~~ 59 (206)
T 1vec_A 4 EFEDYCL-KRELLMGIFEMGWEKPSPIQ--EESIPIALSG---RDILARAKNGTGKSGAYLI 59 (206)
T ss_dssp SGGGSCC-CHHHHHHHHTTTCCSCCHHH--HHHHHHHHTT---CCEEEECCSSSTTHHHHHH
T ss_pred ChhhcCC-CHHHHHHHHHCCCCCCCHHH--HHHHHHHccC---CCEEEECCCCCchHHHHHH
Confidence 4555554 46666666655544444333 4455555543 4599999999999987554
No 292
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=75.63 E-value=2 Score=48.65 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=32.2
Q ss_pred HHHHHHHH-HcCceEEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 001068 242 DTAIREMI-RDEVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1166)
Q Consensus 242 ~~Ay~~m~-~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1166)
..+...+. .-.....|.|.|.+|||||+..+.++.++...++
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g 84 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGH 84 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCC
Confidence 34444443 3466789999999999999999999998876444
No 293
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=75.45 E-value=3.6 Score=46.21 Aligned_cols=62 Identities=18% Similarity=0.363 Sum_probs=41.8
Q ss_pred eCCCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHH
Q 001068 210 INPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 210 vNP~k~l~iY~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il 275 (1166)
+++|..+++ .+...+.........|..|. ..|+..++.. .+..+|+.+++|+|||.+.-+.+
T Consensus 4 ~~~f~~~~l-~~~l~~~l~~~~~~~~~~~Q--~~~i~~~~~~-~~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 4 AKSFDELGL-APELLKGIYAMKFQKPSKIQ--ERALPLLLHN-PPRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CCSSTTSCC-CHHHHHHHHHTTCCSCCHHH--HHHHHHHHCS-SCCCEEEECCTTSCHHHHHHHHH
T ss_pred ccCHhhCCC-CHHHHHHHHHCCCCCCCHHH--HHHHHHHHcC-CCCeEEEECCCCCcHHHHHHHHH
Confidence 477888875 56666665555544455444 4566666554 44779999999999998766543
No 294
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=75.40 E-value=1.9 Score=48.00 Aligned_cols=30 Identities=30% Similarity=0.342 Sum_probs=26.6
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1166)
...|+++|.+|+|||+++..+..+++..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~ 127 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGF 127 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 678999999999999999999999987543
No 295
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=75.30 E-value=2.1 Score=44.42 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
...--|+|.|.+|+|||+.+..++..+.
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3456799999999999999999888763
No 296
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=75.27 E-value=1.3 Score=51.09 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|+||||||+..|.|.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcC
Confidence 3567889999999999999887543
No 297
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=75.27 E-value=1.3 Score=49.63 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
....|+|.|++|+|||..++.+.+.+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 34789999999999999999988775
No 298
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=75.01 E-value=2.3 Score=49.19 Aligned_cols=47 Identities=19% Similarity=0.013 Sum_probs=42.6
Q ss_pred CchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 235 PHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 235 PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
|.+..+.-+|...+..-.+-|.+.|.|.||+|||+.++.|.++++.-
T Consensus 155 ~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~ 201 (422)
T 3ice_A 155 GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN 201 (422)
T ss_dssp CCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred CCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhc
Confidence 56778889999999999999999999999999999999999988753
No 299
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=75.01 E-value=1.2 Score=51.56 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
..+.+.|.|+||||||+..++|.-++.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 458899999999999999999876543
No 300
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=74.89 E-value=1.3 Score=51.39 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=19.9
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1166)
-|+|+|.||||||+.+..+.+.+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHC
Confidence 58999999999999988877655
No 301
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=74.89 E-value=1.8 Score=45.07 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=23.8
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 257 IIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
|+|-|--|||||+-++.+.++|...|
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g 28 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 78999999999999999999998754
No 302
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=74.62 E-value=0.98 Score=51.53 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~ 276 (1166)
..+.+.|.|+||||||+..|.|.-
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCccHHHHHHHHHc
Confidence 457889999999999999888743
No 303
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=74.62 E-value=1 Score=52.54 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=23.1
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.....-|||+|-||||||+.++.+.+.+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456789999999999999999886644
No 304
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=74.44 E-value=1.3 Score=50.05 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+..|+|+|.+|||||+.++.+.+.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999988886654
No 305
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=74.35 E-value=1.8 Score=31.63 Aligned_cols=18 Identities=11% Similarity=0.233 Sum_probs=15.3
Q ss_pred hhhhhHHHHHHhHHHHHH
Q 001068 868 RGIVALQSFIRGEKIRKE 885 (1166)
Q Consensus 868 ~aai~IQs~~RG~~aRr~ 885 (1166)
.+++.||..||+|+.|+.
T Consensus 7 ~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 7 VSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 478899999999998865
No 306
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=74.34 E-value=1.4 Score=50.14 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+..|+|.|++|+|||..++.+.+.+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4579999999999999999988776
No 307
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=74.22 E-value=2.8 Score=49.38 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=26.5
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLAALGG 283 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1166)
..++|.|..|+|||+.++.++.+|...+.
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 49999999999999999999999988654
No 308
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=73.99 E-value=2.4 Score=52.09 Aligned_cols=29 Identities=31% Similarity=0.440 Sum_probs=25.6
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
+..-|+|+|-||||||+.++.+-++|...
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~ 79 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCH 79 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 56789999999999999999999998543
No 309
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.93 E-value=1.4 Score=52.74 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+|+|+|++|+|||+.++.+.+.+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34799999999999999999998876
No 310
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=73.65 E-value=1.5 Score=46.31 Aligned_cols=36 Identities=11% Similarity=0.392 Sum_probs=27.4
Q ss_pred HHHHHHHHcC-ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 243 TAIREMIRDE-VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 243 ~Ay~~m~~~~-~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.+.+.++..- +.-+|+|.|..|+|||+.+..+.++|
T Consensus 46 ~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 46 GALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455555531 23479999999999999999998887
No 311
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=73.60 E-value=1.6 Score=45.90 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=20.9
Q ss_pred EEEEcCCCCCChhHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yL 278 (1166)
-|+|+|.+||||++.++.+...+
T Consensus 13 II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 13 VLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHc
Confidence 68899999999999999998865
No 312
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=73.51 E-value=1.1 Score=53.25 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=27.2
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1166)
.....+.|.|.||||||+.+|+|..++...+|
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 35678999999999999999999998765554
No 313
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=73.40 E-value=2 Score=47.81 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=24.5
Q ss_pred HHHHHcCceEEEEEcCCCCCChhHHHHHHH
Q 001068 246 REMIRDEVNQSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 246 ~~m~~~~~~QsIiisGESGaGKTe~~K~il 275 (1166)
..+..--..+.+.|.|+||||||+..+.++
T Consensus 157 ~~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 157 DELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 344444557899999999999999999988
No 314
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=73.33 E-value=3.9 Score=50.06 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
+..++|+|..|+|||++...++..|..+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~~ 191 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQM 191 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999865
No 315
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=73.30 E-value=2.7 Score=53.05 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhH
Q 001068 893 HRAAVVIQRQIKSRVARQKLKNIKYSS 919 (1166)
Q Consensus 893 ~~AAi~IQ~~~R~~~aRk~~~~~r~aa 919 (1166)
+++|+.||+.||||++|++|+++++++
T Consensus 768 ~~~~~~iQ~~~Rg~l~R~~~~~~r~a~ 794 (795)
T 1w7j_A 768 RAACIRIQKTIRGWLMRKKYMRMRRGD 794 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777777777777777777766543
No 316
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=73.27 E-value=1.3 Score=50.38 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=31.3
Q ss_pred HHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.|...++.=.+.|.+.|.|.+|||||+..+.|+..+
T Consensus 60 ~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 60 RAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 577777666788999999999999999999998874
No 317
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=72.86 E-value=3.9 Score=41.78 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=33.3
Q ss_pred CHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHH-HHHHHH
Q 001068 220 GNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI-AMQYLA 279 (1166)
Q Consensus 220 ~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~-il~yLa 279 (1166)
++...+.........|..|. ..|+..++.. +.+++.+++|+|||.+.-. +++++.
T Consensus 9 ~~~l~~~l~~~~~~~~~~~Q--~~~i~~~~~~---~~~li~~~TGsGKT~~~~~~~~~~l~ 64 (207)
T 2gxq_A 9 KPEILEALHGRGLTTPTPIQ--AAALPLALEG---KDLIGQARTGTGKTLAFALPIAERLA 64 (207)
T ss_dssp CHHHHHHHHHTTCCSCCHHH--HHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHcCCCCCCHHH--HHHHHHHcCC---CCEEEECCCCChHHHHHHHHHHHHHh
Confidence 45555555554444444433 3455555543 4599999999999988443 445554
No 318
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=72.85 E-value=2.3 Score=45.10 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.+.--|+|.|..|||||+-++.|.+.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345678899999999999999998876
No 319
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=72.77 E-value=1.7 Score=51.70 Aligned_cols=29 Identities=28% Similarity=0.187 Sum_probs=24.6
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLAALGG 283 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1166)
+.+.|.|+||||||+..+.|.-.+..-+|
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 58 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLT 58 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCTT
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 78899999999999999999887754443
No 320
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=72.75 E-value=1.5 Score=30.97 Aligned_cols=17 Identities=12% Similarity=0.178 Sum_probs=13.4
Q ss_pred hhhhhHHHHHHhHHHHH
Q 001068 868 RGIVALQSFIRGEKIRK 884 (1166)
Q Consensus 868 ~aai~IQs~~RG~~aRr 884 (1166)
.+++.||..||+|+.++
T Consensus 7 ~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 7 VSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 46888888888888764
No 321
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=72.38 E-value=3.5 Score=51.99 Aligned_cols=59 Identities=25% Similarity=0.412 Sum_probs=36.9
Q ss_pred eCCCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHH
Q 001068 210 INPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIA 274 (1166)
Q Consensus 210 vNP~k~l~iY~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~i 274 (1166)
+|||..+++ ++............|-.++ ..++..++.. ++.++|+|++|||||+....+
T Consensus 71 ~~~f~~~~l-~~~~~~~l~~r~~lP~~~q---~~~i~~~l~~--~~~vii~gpTGSGKTtllp~l 129 (773)
T 2xau_A 71 INPFTGREF-TPKYVDILKIRRELPVHAQ---RDEFLKLYQN--NQIMVFVGETGSGKTTQIPQF 129 (773)
T ss_dssp BCTTTCSBC-CHHHHHHHHHHTTSGGGGG---HHHHHHHHHH--CSEEEEECCTTSSHHHHHHHH
T ss_pred CCCccccCC-CHHHHHHHHHhhcCChHHH---HHHHHHHHhC--CCeEEEECCCCCCHHHHHHHH
Confidence 688888874 5666555544433342222 2334444443 478999999999999965555
No 322
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=72.18 E-value=4.2 Score=43.53 Aligned_cols=64 Identities=23% Similarity=0.286 Sum_probs=36.4
Q ss_pred CCCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHH-HHHHHHh
Q 001068 211 NPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI-AMQYLAA 280 (1166)
Q Consensus 211 NP~k~l~iY~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~-il~yLa~ 280 (1166)
++|..+++ ++.............|..|. ..|+..++.. +.+|+.+++|||||.+.-+ +++.+..
T Consensus 43 ~~f~~l~l-~~~l~~~l~~~g~~~~~~~Q--~~~i~~i~~~---~~~lv~a~TGsGKT~~~~~~il~~l~~ 107 (249)
T 3ber_A 43 KTFKDLGV-TDVLCEACDQLGWTKPTKIQ--IEAIPLALQG---RDIIGLAETGSGKTGAFALPILNALLE 107 (249)
T ss_dssp CCTGGGTC-CHHHHHHHHHTTCCSCCHHH--HHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHcCC-CHHHHHHHHHcCCCCCCHHH--HHHHHHHhCC---CCEEEEcCCCCCchhHhHHHHHHHHhc
Confidence 34555543 34444444443333444433 3355555533 5699999999999998654 4455544
No 323
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=72.05 E-value=1.6 Score=45.65 Aligned_cols=24 Identities=29% Similarity=0.209 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yL 278 (1166)
-.|.|+|++|||||+.++.+-+.|
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 479999999999999999987766
No 324
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=71.99 E-value=54 Score=29.23 Aligned_cols=38 Identities=13% Similarity=0.166 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001068 961 LAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSE 998 (1166)
Q Consensus 961 l~~Lq~r~~k~e~~l~ekeeen~~L~~eL~~~e~r~~E 998 (1166)
+.+|+.++..+-..+.-++.++..|+++...+.....+
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444444444444444444444443333
No 325
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=71.96 E-value=1.7 Score=50.04 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
...+|+|.|++|+|||..++.+.+.
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3679999999999999999888554
No 326
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=71.92 E-value=1.6 Score=51.36 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=32.0
Q ss_pred HHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
.|...++.=.+.|.+.|.|.||||||+..+.|..++.
T Consensus 146 ~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 146 RAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred eEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4777787777889999999999999999999988753
No 327
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=71.90 E-value=8.6 Score=39.72 Aligned_cols=63 Identities=21% Similarity=0.238 Sum_probs=39.1
Q ss_pred EeCCCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 209 AINPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 209 avNP~k~l~iY~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..++|..+++ +++..+.........|..|. ..|+..++.. ..+++.+++|+|||.+.-..+-.
T Consensus 12 ~~~~f~~~~l-~~~l~~~l~~~g~~~~~~~Q--~~~i~~~~~~---~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 12 HSSGFRDFLL-KPELLRAIVDCGFEHPSEVQ--HECIPQAILG---MDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp --CCSTTSCC-CHHHHHHHHHTTCCCCCHHH--HHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCHhhcCC-CHHHHHHHHHCCCCCCCHHH--HHHHHHHhCC---CCEEEECCCCCchhhhhhHHHHH
Confidence 3456887775 56666665554544454443 3455555543 34999999999999887665433
No 328
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=71.77 E-value=1 Score=51.41 Aligned_cols=25 Identities=36% Similarity=0.387 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+.|.|+||||||+..|.|.-.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4578889999999999999887544
No 329
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=71.36 E-value=52 Score=39.55 Aligned_cols=73 Identities=8% Similarity=0.090 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcc
Q 001068 957 KASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV---WQKQMRSLQSSLSIAKKSLA 1029 (1166)
Q Consensus 957 ~~~~l~~Lq~r~~k~e~~l~ekeeen~~L~~eL~~~e~r~~E~e~~~~~~ee~---lqkq~~~LQ~~l~~lk~~Le 1029 (1166)
..+.+.+++.+....+++....+++..+++++++.++.+..+.+.+..++.+. +++++..+..++..++..+.
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444455555555555555555555555555555555555555444433322 33444444444444444443
No 330
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=71.19 E-value=3.6 Score=42.71 Aligned_cols=62 Identities=24% Similarity=0.374 Sum_probs=35.2
Q ss_pred CCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHH-HHHHHHHH
Q 001068 212 PFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETA-KIAMQYLA 279 (1166)
Q Consensus 212 P~k~l~iY~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~-K~il~yLa 279 (1166)
.|..+++ ++.............|-.|. ..|+..++.. ..+|+.+++|+|||.+. -.+++++.
T Consensus 15 ~f~~l~l-~~~l~~~l~~~g~~~~~~~Q--~~~i~~~~~~---~~~lv~~pTGsGKT~~~~~~~l~~l~ 77 (224)
T 1qde_A 15 KFDDMEL-DENLLRGVFGYGFEEPSAIQ--QRAIMPIIEG---HDVLAQAQSGTGKTGTFSIAALQRID 77 (224)
T ss_dssp CGGGGTC-CHHHHHHHHHHTCCSCCHHH--HHHHHHHHTT---CCEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ChhhcCC-CHHHHHHHHHCCCCCCcHHH--HHHHHHHhcC---CCEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3555554 44555544443333333332 3455555543 45999999999999883 34455553
No 331
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=71.16 E-value=53 Score=29.09 Aligned_cols=38 Identities=24% Similarity=0.320 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001068 966 RRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKM 1003 (1166)
Q Consensus 966 ~r~~k~e~~l~ekeeen~~L~~eL~~~e~r~~E~e~~~ 1003 (1166)
.++..++..+.+.+.....+..++..+..++..++..+
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~el 57 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDEL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443333333
No 332
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=71.05 E-value=2.8 Score=44.09 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
..+.++|.|++|+|||..+-.++...+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~ 55 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 467899999999999998877654433
No 333
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=70.82 E-value=1.4 Score=53.56 Aligned_cols=29 Identities=21% Similarity=0.489 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
...+.+.|.|+||||||+..|.++.++.-
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p 395 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYDV 395 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45688999999999999999999876543
No 334
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=70.54 E-value=2.8 Score=46.36 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCChhHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~y 277 (1166)
+.|+|+|+.|.|||+.++.+++.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 79999999999999999888765
No 335
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=70.53 E-value=2.3 Score=54.17 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=27.3
Q ss_pred HHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 249 IRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 249 ~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
+..+....++|.|++|+|||..++.+.+.+..
T Consensus 186 l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 186 LLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp HHCSSCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 34556678999999999999999999999865
No 336
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=70.50 E-value=2 Score=45.72 Aligned_cols=26 Identities=31% Similarity=0.286 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
+-.|.|+|++|||||+.++.+-+.|-
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999877663
No 337
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=70.16 E-value=2.2 Score=52.24 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=22.7
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
.+++|.|++|+|||+.++.+...+.
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 6899999999999999999988764
No 338
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=69.99 E-value=2 Score=48.80 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=25.7
Q ss_pred HHHHHHHc--CceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 244 AIREMIRD--EVNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 244 Ay~~m~~~--~~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
....++.. ...+.+.|.|++|||||+.+++++-.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44455443 35688999999999999999988654
No 339
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=69.80 E-value=29 Score=31.68 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhhccccc
Q 001068 1010 WQKQMRSLQSSLSIAKKSLAIDD 1032 (1166)
Q Consensus 1010 lqkq~~~LQ~~l~~lk~~Le~~e 1032 (1166)
+..+++.|+..+..++..+..+.
T Consensus 66 l~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 66 LVEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHHTTSHHHHHHHHHHHTTC---
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666766666655443
No 340
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=69.64 E-value=2 Score=51.21 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.+|+|.|++|+|||..++.+-+.
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 55778999999999999999888554
No 341
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=68.57 E-value=3.4 Score=47.25 Aligned_cols=36 Identities=28% Similarity=0.381 Sum_probs=27.2
Q ss_pred chhH-HHHHHHHHHHHcCceEEEEEcCCCCCChhHHH
Q 001068 236 HVYA-ITDTAIREMIRDEVNQSIIISGESGAGKTETA 271 (1166)
Q Consensus 236 Hiya-vA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 271 (1166)
.||. ++.......+..+.|-+|+--|.+|||||.|+
T Consensus 66 ~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 66 TVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHH
T ss_pred HHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEE
Confidence 3444 34444555666788999999999999999886
No 342
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=68.42 E-value=3 Score=50.18 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=25.6
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
....|++.|-+|||||+.++.+.++|-..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 45689999999999999999999998654
No 343
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=68.40 E-value=1.9 Score=51.76 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=26.5
Q ss_pred HHHHHHH--cCceEEEEEcCCCCCChhHHHHHHH-HHHHh
Q 001068 244 AIREMIR--DEVNQSIIISGESGAGKTETAKIAM-QYLAA 280 (1166)
Q Consensus 244 Ay~~m~~--~~~~QsIiisGESGaGKTe~~K~il-~yLa~ 280 (1166)
+...+.- =.+.+.+.|.|+||||||+.++.++ .-+..
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 4444443 1357899999999999999999963 44443
No 344
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=68.25 E-value=64 Score=29.87 Aligned_cols=45 Identities=16% Similarity=0.171 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001068 963 ELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSME 1007 (1166)
Q Consensus 963 ~Lq~r~~k~e~~l~ekeeen~~L~~eL~~~e~r~~E~e~~~~~~e 1007 (1166)
.++..+..++.+..+++.++..|+.+++.++..+..++..+....
T Consensus 27 ~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~ 71 (101)
T 3u1c_A 27 QAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSE 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555555555555555554443
No 345
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=68.21 E-value=2.6 Score=43.10 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=17.2
Q ss_pred EEEEcCCCCCChhHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il 275 (1166)
-|+|.|.+|||||+..+.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~ 26 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFT 26 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 47899999999999877765
No 346
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=68.09 E-value=3.7 Score=43.79 Aligned_cols=28 Identities=25% Similarity=0.176 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
...-++|+|+.|+|||+.+-.++.-+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~ 38 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEY 38 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3578999999999999988766655544
No 347
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=68.05 E-value=6.4 Score=35.46 Aligned_cols=45 Identities=16% Similarity=0.283 Sum_probs=36.9
Q ss_pred CcEEEEecCCCCEEeEEEEEecC-CeeEEEcCCCcEEEEeCCCcccCCC
Q 001068 119 KLQSWFQLPNGNWELGKILSISG-TESVISLPEGKVLKVKSENLVSANP 166 (1166)
Q Consensus 119 ~~~vw~~~~~~~~~~~~v~~~~~-~~~~v~~~~g~~~~v~~~~~~~~np 166 (1166)
|+-.| .++.|-+|+|+++.+ +..+|...||.+.+|...++.|+..
T Consensus 28 VlArW---~D~~yYPAkI~sV~~~~~YtV~F~DG~~etvk~~~IKp~~~ 73 (85)
T 3qii_A 28 VLACW---SDCRFYPAKVTAVNKDGTYTVKFYDGVVQTVKHIHVKAFSK 73 (85)
T ss_dssp EEEEC---TTSCEEEEEEEEECTTSEEEEEETTSCEEEEEGGGEEECC-
T ss_pred EEEEe---CCCCEeeEEEEEECCCCeEEEEEeCCCeEEecHHHcccCCh
Confidence 44558 788899999999976 5678888899999999999988654
No 348
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=67.98 E-value=4.4 Score=45.89 Aligned_cols=68 Identities=18% Similarity=0.344 Sum_probs=41.2
Q ss_pred EEeCCCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHH-HHHHHH
Q 001068 208 VAINPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI-AMQYLA 279 (1166)
Q Consensus 208 iavNP~k~l~iY~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~-il~yLa 279 (1166)
..+.+|..+++ ++...+.........|..+. ..|+..++.. .++.+|+.+++|||||...-+ +++.+.
T Consensus 22 ~~~~~f~~~~l-~~~l~~~l~~~g~~~~~~~Q--~~~i~~~~~~-~~~~~lv~apTGsGKT~~~~~~~~~~~~ 90 (412)
T 3fht_A 22 YSVKSFEELRL-KPQLLQGVYAMGFNRPSKIQ--ENALPLMLAE-PPQNLIAQSQSGTGKTAAFVLAMLSQVE 90 (412)
T ss_dssp CCSSCTGGGTC-CHHHHHHHHHTTCCSCCHHH--HHHHHHHHSS-SCCCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred cccCCHhhCCC-CHHHHHHHHHcCCCCCCHHH--HHHHHHHhcC-CCCeEEEECCCCchHHHHHHHHHHHHhh
Confidence 34566666654 45555555444444444443 3455555543 467899999999999988644 444443
No 349
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=67.86 E-value=1.4 Score=53.66 Aligned_cols=27 Identities=22% Similarity=0.557 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..|.++.++
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 346889999999999999999987654
No 350
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=67.65 E-value=4.6 Score=47.52 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
+.+|++.|++|+|||..++.+-+.+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 36899999999999999999988874
No 351
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=67.51 E-value=2.3 Score=51.29 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
.+.+.|.|+||||||+..|++.-.+.
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 57899999999999999999876553
No 352
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=67.49 E-value=3.6 Score=48.29 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=26.9
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
+.+..|+++|.+|+|||+++-.+..+|+..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 346789999999999999999999999886
No 353
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=67.39 E-value=54 Score=33.21 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001068 960 FLAELQRRVLKAEAALREKEEENDILHQRLQQYESRW 996 (1166)
Q Consensus 960 ~l~~Lq~r~~k~e~~l~ekeeen~~L~~eL~~~e~r~ 996 (1166)
...+|+.++..++.....+++++..|+.++.+.+..+
T Consensus 49 ~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r 85 (168)
T 3o0z_A 49 LNRELQERNRILENSKSQTDKDYYQLQAILEAERRDR 85 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555566666666665555554443
No 354
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=67.30 E-value=2 Score=52.40 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..|.++..+
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 346889999999999999999886543
No 355
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=67.18 E-value=2.3 Score=49.59 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=24.7
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhc
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAAL 281 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~ 281 (1166)
.++.++|.|.+|||||+..+.++..+...
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~ 80 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLR 80 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 47899999999999999988888766553
No 356
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=67.13 E-value=2.1 Score=52.33 Aligned_cols=27 Identities=26% Similarity=0.581 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..|.++.++
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 356899999999999999999987654
No 357
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=67.12 E-value=3 Score=43.73 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=22.2
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa 279 (1166)
=|+|-|--|||||+.++.+.++|.
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 589999999999999999999984
No 358
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=67.09 E-value=1 Score=48.66 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+..-|+|.|-.|||||+.++.+.++|
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999887776
No 359
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=66.98 E-value=2.5 Score=43.08 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=17.4
Q ss_pred EEEEcCCCCCChhHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il 275 (1166)
-|+|.|.+|||||+..+.++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~ 50 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFT 50 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 57899999999999887764
No 360
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=66.43 E-value=2.3 Score=48.30 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
+...-|+|+|.+|||||+.++.+.+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34468999999999999998877543
No 361
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=66.40 E-value=0.9 Score=58.81 Aligned_cols=42 Identities=14% Similarity=0.072 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhHHHHHHHHhhHHHHHHHHH
Q 001068 896 AVVIQRQIKSRVARQKLKNIKYSSIMIQSVIRGWLVRRCSGD 937 (1166)
Q Consensus 896 Ai~IQ~~~R~~~aRk~~~~~r~aai~IQs~~Rg~laRr~~~~ 937 (1166)
|..++.++|+..++..++..+.+++.||+.+|++..++...+
T Consensus 767 a~~Ll~WIr~k~a~l~~r~~~~sl~~IQ~~ir~f~~fr~~ek 808 (995)
T 2ycu_A 767 ANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEK 808 (995)
T ss_dssp HHHHHHHTTTTTCCCSCHHHHHHHHHHHHHHHHHTTHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhc
Confidence 445677888877777777788888888888888877665543
No 362
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=66.16 E-value=17 Score=33.72 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001068 967 RVLKAEAALREKEEENDILHQRLQQYESRWSEYEQ-----------------KMKSMEEVWQKQMRSLQSSLSIAKKSLA 1029 (1166)
Q Consensus 967 r~~k~e~~l~ekeeen~~L~~eL~~~e~r~~E~e~-----------------~~~~~ee~lqkq~~~LQ~~l~~lk~~Le 1029 (1166)
.+..+..++..++.|+..|+++++.++.++....- -.....+..++.+..||.+++.++..+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666666666666543110 0222234467888899999999998876
Q ss_pred ccc
Q 001068 1030 IDD 1032 (1166)
Q Consensus 1030 ~~e 1032 (1166)
..+
T Consensus 93 ~lE 95 (100)
T 1go4_E 93 AME 95 (100)
T ss_dssp TCC
T ss_pred HHh
Confidence 543
No 363
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=66.12 E-value=3.4 Score=48.84 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=25.0
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.....|++.|-+|||||+.++.+.++|..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 34578999999999999999999998864
No 364
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=65.96 E-value=4.4 Score=44.84 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+.|+|+|++|.|||+.++.+.+.+
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 699999999999999999887765
No 365
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=65.95 E-value=3.2 Score=49.36 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
.+..|+|.|++|+|||..+|.+...
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999988653
No 366
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=65.85 E-value=4.3 Score=49.38 Aligned_cols=29 Identities=28% Similarity=0.598 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
++.++|+|..|+|||++++.++.+|...+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g 232 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLG 232 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999988754
No 367
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=65.75 E-value=8.2 Score=42.74 Aligned_cols=62 Identities=26% Similarity=0.421 Sum_probs=37.3
Q ss_pred CCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 212 PFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 212 P~k~l~iY~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+|..+++ ++.............|..+. ..|+..++..+ +.+++.+++|+|||.+.-..+-.+
T Consensus 7 ~f~~~~l-~~~~~~~l~~~g~~~~~~~Q--~~~i~~~~~~~--~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 7 NFNELNL-SDNILNAIRNKGFEKPTDIQ--MKVIPLFLNDE--YNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp CGGGSSC-CHHHHHHHHHHTCCSCCHHH--HHHHHHHHHTC--SEEEEECCSSSSHHHHHHHHHHHH
T ss_pred chhhcCC-CHHHHHHHHHcCCCCCCHHH--HHHHHHHhCCC--CCEEEECCCCChHHHHHHHHHHHH
Confidence 4555554 34555544444443344333 34566666543 579999999999999866544333
No 368
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=65.67 E-value=2.8 Score=49.02 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=19.9
Q ss_pred CceEE--EEEcCCCCCChhHHHHHHHH
Q 001068 252 EVNQS--IIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 252 ~~~Qs--IiisGESGaGKTe~~K~il~ 276 (1166)
..... |.|.|+||||||+..+.|+.
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 34456 88999999999999888753
No 369
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=65.66 E-value=2.6 Score=49.45 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.+.+|+|.|++|+|||..++.+...+
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999887765
No 370
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=65.54 E-value=57 Score=30.07 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001068 957 KASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSME 1007 (1166)
Q Consensus 957 ~~~~l~~Lq~r~~k~e~~l~ekeeen~~L~~eL~~~e~r~~E~e~~~~~~e 1007 (1166)
...++..|...+.+........+.+...+..+++.+...+-+.-.+|...+
T Consensus 24 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a 74 (97)
T 2eqb_B 24 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA 74 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666666666777777777777666665555554443
No 371
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=65.41 E-value=5.8 Score=41.15 Aligned_cols=62 Identities=24% Similarity=0.439 Sum_probs=38.2
Q ss_pred CCCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHH-HHHHH
Q 001068 211 NPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI-AMQYL 278 (1166)
Q Consensus 211 NP~k~l~iY~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~-il~yL 278 (1166)
..|..+++ ++...+.........|..|. ..|+..++.. +.+++.+++|||||.+.-+ +++.+
T Consensus 4 ~~f~~~~l-~~~l~~~l~~~g~~~~~~~Q--~~~i~~~~~~---~~~lv~a~TGsGKT~~~~~~~l~~l 66 (219)
T 1q0u_A 4 TQFTRFPF-QPFIIEAIKTLRFYKPTEIQ--ERIIPGALRG---ESMVGQSQTGTGKTHAYLLPIMEKI 66 (219)
T ss_dssp CCGGGSCC-CHHHHHHHHHTTCCSCCHHH--HHHHHHHHHT---CCEEEECCSSHHHHHHHHHHHHHHC
T ss_pred CCHhhCCC-CHHHHHHHHHCCCCCCCHHH--HHHHHHHhCC---CCEEEECCCCChHHHHHHHHHHHHH
Confidence 44666654 56666666655544444433 3455555543 5689999999999988544 34444
No 372
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=65.39 E-value=21 Score=31.74 Aligned_cols=53 Identities=15% Similarity=0.161 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001068 968 VLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSS 1020 (1166)
Q Consensus 968 ~~k~e~~l~ekeeen~~L~~eL~~~e~r~~E~e~~~~~~ee~lqkq~~~LQ~~ 1020 (1166)
...+..++.+.+.+|..|++++..++.++.+...+-.....+|+.-++.|--.
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~K 60 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVS 60 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 44455667777788888888888888877777766666655555554444433
No 373
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=65.24 E-value=6.9 Score=41.02 Aligned_cols=64 Identities=14% Similarity=0.250 Sum_probs=40.0
Q ss_pred CCCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHH-HHHHHHh
Q 001068 211 NPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI-AMQYLAA 280 (1166)
Q Consensus 211 NP~k~l~iY~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~-il~yLa~ 280 (1166)
.+|..+++ ++.............|..|. ..|+..++.. +.+|+.+++|+|||.+.-+ +++.+..
T Consensus 25 ~~f~~~~l-~~~l~~~l~~~~~~~~~~~Q--~~~i~~~~~~---~~~li~a~TGsGKT~~~~~~~l~~l~~ 89 (236)
T 2pl3_A 25 TRFSDFPL-SKKTLKGLQEAQYRLVTEIQ--KQTIGLALQG---KDVLGAAKTGSGKTLAFLVPVLEALYR 89 (236)
T ss_dssp SBGGGSCC-CHHHHHHHHHTTCCBCCHHH--HHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCHhhcCC-CHHHHHHHHHCCCCCCCHHH--HHHHHHHhCC---CCEEEEeCCCCcHHHHHHHHHHHHHHh
Confidence 45666664 56666665554444444433 4556555543 4599999999999998655 4556544
No 374
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=65.03 E-value=44 Score=29.15 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001068 970 KAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSS 1020 (1166)
Q Consensus 970 k~e~~l~ekeeen~~L~~eL~~~e~r~~E~e~~~~~~ee~lqkq~~~LQ~~ 1020 (1166)
.+..++.+.+.+|..|++++..++.++.+...+......+++.-++.|--.
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~K 54 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGK 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 345667777888888888888888887777766666655555555544433
No 375
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=64.99 E-value=3.3 Score=52.84 Aligned_cols=26 Identities=38% Similarity=0.452 Sum_probs=23.4
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
.+|+|.|++|+|||+.++.+-+++..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 69999999999999999999888753
No 376
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=64.70 E-value=3.4 Score=48.17 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...|.|.|+||||||+..+.++-.+
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 3478899999999999999887543
No 377
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=64.69 E-value=2.8 Score=50.57 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
...+.+-|.|++|||||+..|+|.-.+.
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3568889999999999999999876543
No 378
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=64.42 E-value=8.9 Score=33.05 Aligned_cols=45 Identities=16% Similarity=0.283 Sum_probs=36.5
Q ss_pred CcEEEEecCCCCEEeEEEEEecC-CeeEEEcCCCcEEEEeCCCcccCCC
Q 001068 119 KLQSWFQLPNGNWELGKILSISG-TESVISLPEGKVLKVKSENLVSANP 166 (1166)
Q Consensus 119 ~~~vw~~~~~~~~~~~~v~~~~~-~~~~v~~~~g~~~~v~~~~~~~~np 166 (1166)
|+-.| .++.|-+|+|+++.+ +..+|...||.+.+|...++.|...
T Consensus 13 vmArW---~D~~yYpA~I~si~~~~~Y~V~F~dG~~etvk~~~ikp~~~ 58 (67)
T 3p8d_A 13 VLACW---SDCRFYPAKVTAVNKDGTYTVKFYDGVVQTVKHIHVKAFSK 58 (67)
T ss_dssp EEEEC---TTSCEEEEEEEEECTTSEEEEEETTSCEEEEEGGGEEECC-
T ss_pred EEEEc---CCCCEeeEEEEEECCCCeEEEEEeCCceEEEeHHHcccCCc
Confidence 44457 788899999999977 4678888889999999999988654
No 379
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=64.05 E-value=5.3 Score=44.50 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=28.0
Q ss_pred HHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHH
Q 001068 244 AIREMIRDEVNQSIIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 244 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~y 277 (1166)
..+.++..++..++|++|+.|.|||++++.+.+.
T Consensus 8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 8 TLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp HHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4555666666889999999999999999998774
No 380
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=63.91 E-value=3.2 Score=46.03 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~ 276 (1166)
..+.+.|.|+||||||+..+.++.
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHST
T ss_pred cCCeEEEECCCCCcHHHHHHHhcc
Confidence 467889999999999999887753
No 381
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=63.84 E-value=2.8 Score=53.17 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+..|+|.|+||+|||+.++.+...+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 456789999999999999999886543
No 382
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=63.83 E-value=3 Score=51.09 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
..+.+.|.|+||||||+..|+|.-.+.
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 468899999999999999998876543
No 383
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=63.82 E-value=3.6 Score=39.98 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCChhHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il 275 (1166)
=-|+|.|.+|+|||+....++
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHH
Confidence 358999999999999877665
No 384
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=63.79 E-value=3.7 Score=43.83 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
.+.-.++++|-.|+|||+++..+..+|+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3456788899999999999999999998
No 385
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=63.67 E-value=2.8 Score=48.93 Aligned_cols=25 Identities=24% Similarity=0.435 Sum_probs=19.4
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHH
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il 275 (1166)
.+-+=.|+|.|+||||||+..+.++
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~ 52 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLF 52 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHT
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHh
Confidence 3445568999999999999877764
No 386
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=63.56 E-value=85 Score=29.89 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001068 958 ASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKK 1026 (1166)
Q Consensus 958 ~~~l~~Lq~r~~k~e~~l~ekeeen~~L~~eL~~~e~r~~E~e~~~~~~ee~lqkq~~~LQ~~l~~lk~ 1026 (1166)
+..+..++.+.+.........+.+...+++.+........++|.++..+.+++.=.....++++..++.
T Consensus 47 ~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~eLq~ 115 (119)
T 3ol1_A 47 AEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQA 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444555666666777776666666666766666666554333334444444443
No 387
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=63.53 E-value=4.3 Score=46.35 Aligned_cols=39 Identities=26% Similarity=0.247 Sum_probs=28.6
Q ss_pred HHHHHHH-cC--ceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 244 AIREMIR-DE--VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 244 Ay~~m~~-~~--~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
.+..++. .+ ....++|.|++|+|||+.+.+++..++..+
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~g 89 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMG 89 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 4444444 22 357899999999999999999887776533
No 388
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=63.43 E-value=5.3 Score=45.60 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=19.9
Q ss_pred cCceEEEEEcCCCCCChhHHH
Q 001068 251 DEVNQSIIISGESGAGKTETA 271 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1166)
++.|-||+.-|.+|||||.|+
T Consensus 90 ~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 90 DGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp TTCCEEEEEEECTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCceEE
Confidence 788999999999999999986
No 389
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=63.42 E-value=3.1 Score=49.75 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
+..|+|.|++|+|||+.+|.+...+
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3459999999999999999886653
No 390
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=63.25 E-value=3.6 Score=51.62 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=22.2
Q ss_pred EEEEcCCCCCChhHHHHHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il~yLa 279 (1166)
+++|.|++|+|||+.++.+-+++.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~ 546 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF 546 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 799999999999999999988874
No 391
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=63.23 E-value=3.4 Score=47.27 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..+.+.|.|.||||||+..+.++-.+
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHhccc
Confidence 46789999999999999998887443
No 392
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=63.20 E-value=86 Score=38.13 Aligned_cols=22 Identities=18% Similarity=0.069 Sum_probs=16.7
Q ss_pred ceEEEEEcCCCCCChhHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIA 274 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~i 274 (1166)
..-.|.|.|.+|+|||+....+
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L 58 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKL 58 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHhH
Confidence 3456789999999999765544
No 393
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=63.12 E-value=1.9 Score=52.45 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.+.|.|+||||||+..|.++.++
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 456889999999999999988776543
No 394
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=62.86 E-value=3 Score=41.93 Aligned_cols=20 Identities=35% Similarity=0.625 Sum_probs=17.1
Q ss_pred EEEEcCCCCCChhHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il 275 (1166)
-|+|.|.||+|||+..+.++
T Consensus 4 kv~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999998877664
No 395
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=62.83 E-value=51 Score=34.04 Aligned_cols=64 Identities=13% Similarity=0.170 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001068 964 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKS 1027 (1166)
Q Consensus 964 Lq~r~~k~e~~l~ekeeen~~L~~eL~~~e~r~~E~e~~~~~~ee~lqkq~~~LQ~~l~~lk~~ 1027 (1166)
|+..+..++.+...+...+..|..++..+..+..............+++++..|+.....+++.
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ 110 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKY 110 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444333333332222333444444444444444443
No 396
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=62.83 E-value=5.1 Score=45.54 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=19.8
Q ss_pred cCceEEEEEcCCCCCChhHHH
Q 001068 251 DEVNQSIIISGESGAGKTETA 271 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1166)
++.|-||+-.|.+|||||.|+
T Consensus 92 ~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 92 EGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HTCCEEEEEESSTTSSHHHHH
T ss_pred CCCceEEEEecCCCCCCCeEE
Confidence 688999999999999999996
No 397
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.70 E-value=18 Score=31.69 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=38.5
Q ss_pred cCcEEEEecCCCCEEeEEEEEecC-CeeEEEcCCCcEEEEeCCCcccCCCC
Q 001068 118 KKLQSWFQLPNGNWELGKILSISG-TESVISLPEGKVLKVKSENLVSANPD 167 (1166)
Q Consensus 118 ~~~~vw~~~~~~~~~~~~v~~~~~-~~~~v~~~~g~~~~v~~~~~~~~np~ 167 (1166)
.|..|-..-.++.|-.|+|.++.+ +.++|...|+...+|+..+|.|..+.
T Consensus 12 vGd~clA~wsDg~~Y~A~I~~v~~~~~~~V~f~Dyn~e~v~~~~lrplp~~ 62 (74)
T 2equ_A 12 AGEEVLARWTDCRYYPAKIEAINKEGTFTVQFYDGVIRCLKRMHIKAMPED 62 (74)
T ss_dssp TTCEEEEECSSSSEEEEEEEEESTTSSEEEEETTSCEEEECGGGEECCCGG
T ss_pred CCCEEEEECCCCCEEEEEEEEECCCCEEEEEEecCCeEEecHHHCeeCChh
Confidence 334444444488899999999976 67888888888888999998887654
No 398
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=62.62 E-value=3 Score=48.45 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=23.7
Q ss_pred HHHHHHHcC--ceEEEEEcCCCCCChhHHHHHHH
Q 001068 244 AIREMIRDE--VNQSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 244 Ay~~m~~~~--~~QsIiisGESGaGKTe~~K~il 275 (1166)
.+..|+..+ ....++|.|+||||||+.++.++
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 444555333 45789999999999999988653
No 399
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=62.60 E-value=3.9 Score=45.46 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yL 278 (1166)
..|+|.|++|+|||+.++.+-+.+
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 479999999999999999886654
No 400
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=62.59 E-value=5.5 Score=44.93 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.9
Q ss_pred cCceEEEEEcCCCCCChhHHH
Q 001068 251 DEVNQSIIISGESGAGKTETA 271 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1166)
++.|-||+--|.+|||||.|+
T Consensus 75 ~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 75 EGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp TTCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEEECCCCCCCceEe
Confidence 788999999999999999986
No 401
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=62.59 E-value=2.3 Score=51.94 Aligned_cols=28 Identities=18% Similarity=0.408 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
...+.+.|.|+||||||+..+.++.++.
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 4568899999999999999998876543
No 402
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=62.58 E-value=7.6 Score=43.77 Aligned_cols=41 Identities=17% Similarity=0.117 Sum_probs=31.5
Q ss_pred HHHHHH-HHcCceEEEEEcCCCCCChhHHHHHHHHHHHhccC
Q 001068 243 TAIREM-IRDEVNQSIIISGESGAGKTETAKIAMQYLAALGG 283 (1166)
Q Consensus 243 ~Ay~~m-~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~ 283 (1166)
.+...+ ........|.|+|.+|||||+.+..++.++...++
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~ 85 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGL 85 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence 344443 23466788999999999999999999998876544
No 403
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=62.40 E-value=4.9 Score=50.00 Aligned_cols=63 Identities=19% Similarity=0.271 Sum_probs=40.3
Q ss_pred CCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHH-HHHHHHh
Q 001068 213 FKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI-AMQYLAA 280 (1166)
Q Consensus 213 ~k~l~iY~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~-il~yLa~ 280 (1166)
|..+| ..+.....++.... .++|.+=..|+..++.+ ++.+||+|++|||||..+-+ +++.+..
T Consensus 3 f~~l~-l~~~~~~~l~~~g~--~~l~~~Q~~~i~~~~~~--~~~~lv~apTGsGKT~~~~l~il~~~~~ 66 (720)
T 2zj8_A 3 VDELR-VDERIKSTLKERGI--ESFYPPQAEALKSGILE--GKNALISIPTASGKTLIAEIAMVHRILT 66 (720)
T ss_dssp GGGCC-SCHHHHHHHHHTTC--CBCCHHHHHHHTTTGGG--TCEEEEECCGGGCHHHHHHHHHHHHHHH
T ss_pred HhhcC-CCHHHHHHHHHCCC--CCCCHHHHHHHHHHhcC--CCcEEEEcCCccHHHHHHHHHHHHHHHh
Confidence 44455 35566666665333 34445556666653333 57899999999999999844 5566653
No 404
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=62.15 E-value=3 Score=46.32 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~ 276 (1166)
+.+=.|+|.|+||||||+..+.++.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhC
Confidence 4456789999999999999998754
No 405
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=61.97 E-value=4.1 Score=39.35 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=16.8
Q ss_pred EEEEcCCCCCChhHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il 275 (1166)
-|++.|.+|+|||+....++
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999998776654
No 406
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=61.83 E-value=47 Score=32.07 Aligned_cols=60 Identities=13% Similarity=0.289 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001068 959 SFLAELQRRVLKAEAALREKEEENDILHQRL-----------QQYESRWSEYEQKMKSMEEVWQKQMRSLQ 1018 (1166)
Q Consensus 959 ~~l~~Lq~r~~k~e~~l~ekeeen~~L~~eL-----------~~~e~r~~E~e~~~~~~ee~lqkq~~~LQ 1018 (1166)
.++.++++.+..++.++..+...+..|+..+ ..++..+..++..+..+...++.++...|
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq 106 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQ 106 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333333333 33333344444444444444555554444
No 407
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=61.77 E-value=9.8 Score=43.09 Aligned_cols=62 Identities=26% Similarity=0.402 Sum_probs=34.0
Q ss_pred CCCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHH-HHHHH
Q 001068 211 NPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI-AMQYL 278 (1166)
Q Consensus 211 NP~k~l~iY~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~-il~yL 278 (1166)
++|..+++ ++.............|..|. ..|+..++. + +.+|+.+++|||||.+.-+ +++.+
T Consensus 40 ~~f~~~~l-~~~~~~~l~~~~~~~~~~~Q--~~~i~~~~~-~--~~~lv~a~TGsGKT~~~~~~~~~~~ 102 (414)
T 3eiq_A 40 DSFDDMNL-SESLLRGIYAYGFEKPSAIQ--QRAILPCIK-G--YDVIAQAQSGTGKTATFAISILQQI 102 (414)
T ss_dssp CCGGGGCC-CHHHHHHHHHTTCCSCCHHH--HHHHHHHHT-T--CCEEECCCSCSSSHHHHHHHHHHHC
T ss_pred cCHhhCCC-CHHHHHHHHHcCCCCCCHHH--HHHhHHHhC-C--CCEEEECCCCCcccHHHHHHHHHHH
Confidence 34444443 34444443333333344433 345555554 2 3499999999999988544 34444
No 408
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=61.63 E-value=26 Score=29.17 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=41.1
Q ss_pred ccCcEEEEecCCCCEEeEEEEEecC--CeeEEEcCCCcEEEEeCCCcccCC
Q 001068 117 KKKLQSWFQLPNGNWELGKILSISG--TESVISLPEGKVLKVKSENLVSAN 165 (1166)
Q Consensus 117 ~~~~~vw~~~~~~~~~~~~v~~~~~--~~~~v~~~~g~~~~v~~~~~~~~n 165 (1166)
..+..|.+...++.|-+|+|+++.. +...|...|+....+...++.+..
T Consensus 5 ~~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~kdi~~~~ 55 (58)
T 4hcz_A 5 WEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAA 55 (58)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTSCEEEEEGGGEEECS
T ss_pred ccCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhHHccccc
Confidence 4566899999999999999999754 478999999999999888887654
No 409
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=61.60 E-value=5.8 Score=45.06 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=19.9
Q ss_pred cCceEEEEEcCCCCCChhHHH
Q 001068 251 DEVNQSIIISGESGAGKTETA 271 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1166)
++.|-||+-.|.+|||||.|+
T Consensus 81 ~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 81 EGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp TTCCEEEEEESSTTSSHHHHH
T ss_pred hhcCeeEEEecccCCCceEee
Confidence 688999999999999999996
No 410
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=61.41 E-value=4.4 Score=41.59 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCChhHHHHH-HHHHH
Q 001068 254 NQSIIISGESGAGKTETAKI-AMQYL 278 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~-il~yL 278 (1166)
.+-++|+|..|||||+.+.. +.+|.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999844 44454
No 411
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=61.30 E-value=1e+02 Score=28.46 Aligned_cols=46 Identities=24% Similarity=0.215 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001068 964 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV 1009 (1166)
Q Consensus 964 Lq~r~~k~e~~l~ekeeen~~L~~eL~~~e~r~~E~e~~~~~~ee~ 1009 (1166)
...++..++..+...+..+..+..++..+..++..++..+...++.
T Consensus 21 a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~ 66 (101)
T 3u1c_A 21 ALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEE 66 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555555555544444444444333
No 412
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=61.14 E-value=4 Score=40.20 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCChhHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il 275 (1166)
--|+|.|.+|+|||+..+.++
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 358999999999998877764
No 413
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=61.14 E-value=3.8 Score=39.42 Aligned_cols=20 Identities=20% Similarity=0.496 Sum_probs=16.9
Q ss_pred EEEEcCCCCCChhHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il 275 (1166)
-|++.|.+|+|||+....++
T Consensus 5 ~i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999998866554
No 414
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=60.93 E-value=2.4 Score=44.80 Aligned_cols=46 Identities=30% Similarity=0.385 Sum_probs=31.3
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHHHhccCC----CCchhhhhh-----hhHHHHhhcCc
Q 001068 255 QSIIISGESGAGKTETAKIAMQYLAALGGG----SGIEYEILK-----TNPILEAFGNA 304 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yLa~~~~~----~~ie~~il~-----snpiLEAFGNA 304 (1166)
=+|-|+|-.|||||+.++++-+ +|-. ..+..+++. -..|.+.||..
T Consensus 10 ~~iglTGgigsGKStv~~~l~~----~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~ 64 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA----RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPA 64 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH----TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGG
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChh
Confidence 3689999999999999887654 2321 123334443 35788899975
No 415
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=60.92 E-value=5.4 Score=45.58 Aligned_cols=21 Identities=48% Similarity=0.648 Sum_probs=19.8
Q ss_pred cCceEEEEEcCCCCCChhHHH
Q 001068 251 DEVNQSIIISGESGAGKTETA 271 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1166)
++.|-||+.-|.+|||||.|+
T Consensus 102 ~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 102 DGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp TTCCEEEEEEESTTSSHHHHH
T ss_pred CCCCEEEEEeCCCCCCccEEe
Confidence 788999999999999999886
No 416
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=60.91 E-value=4.5 Score=45.99 Aligned_cols=30 Identities=33% Similarity=0.326 Sum_probs=24.9
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
....++|.|++|||||+.+.+++..++..+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g 89 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAG 89 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 356799999999999999999987766543
No 417
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=60.74 E-value=6.1 Score=45.28 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.8
Q ss_pred cCceEEEEEcCCCCCChhHHH
Q 001068 251 DEVNQSIIISGESGAGKTETA 271 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1166)
++.|-||+--|.+|||||.|+
T Consensus 82 ~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 82 AGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp TTCCEEEEEECSTTSSHHHHH
T ss_pred CCCceEEEeecCCCCCCceEE
Confidence 788999999999999999986
No 418
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=60.65 E-value=4.8 Score=50.44 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCChhHHHHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il~yL 278 (1166)
-+|+|.|++|+|||+.++.+-+.+
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 589999999999999999887766
No 419
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=60.59 E-value=4.1 Score=47.74 Aligned_cols=29 Identities=34% Similarity=0.568 Sum_probs=25.5
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
+..|+|.|.+|+|||+++-.+..+++..+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G 127 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRG 127 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999998654
No 420
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=60.55 E-value=11 Score=42.44 Aligned_cols=60 Identities=23% Similarity=0.291 Sum_probs=37.0
Q ss_pred eCCCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHH
Q 001068 210 INPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 210 vNP~k~l~iY~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il 275 (1166)
.++|..+++ +++..+.........|..|. ..|+..++.. +.+++.+++|+|||.+.-+.+
T Consensus 20 ~~~f~~~~l-~~~l~~~l~~~g~~~~~~~Q--~~~i~~i~~~---~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 20 GNTFEDFYL-KRELLMGIFEAGFEKPSPIQ--EEAIPVAITG---RDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp -CCGGGGCC-CHHHHHHHHHTTCCSCCHHH--HHHHHHHHHT---CCEEEECCTTSCHHHHHHHHH
T ss_pred cCChhhcCC-CHHHHHHHHHCCCCCCCHHH--HHHHHHHhcC---CCEEEECCCCcHHHHHHHHHH
Confidence 345777765 45555555544444454444 3455555543 349999999999998765544
No 421
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=60.54 E-value=6.7 Score=45.06 Aligned_cols=35 Identities=31% Similarity=0.607 Sum_probs=24.9
Q ss_pred chhHH-HHHHHHHHHHcCceEEEEEcCCCCCChhHHH
Q 001068 236 HVYAI-TDTAIREMIRDEVNQSIIISGESGAGKTETA 271 (1166)
Q Consensus 236 Hiyav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 271 (1166)
.||.- +.......+ ++.|-||+--|.+|||||.|+
T Consensus 83 ~Vy~~~~~plv~~~l-~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 83 DVYSVVVSPLIEEVL-NGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHHHHHHHHH-HTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCceEEEEeecCCCCCcceec
Confidence 45543 333333333 688999999999999999885
No 422
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=60.53 E-value=4.5 Score=39.11 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=17.2
Q ss_pred EEEEEcCCCCCChhHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il 275 (1166)
=-|+|.|.+|+|||+....++
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 358999999999998866554
No 423
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=60.29 E-value=4.2 Score=48.75 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=26.6
Q ss_pred HHHHHc--CceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 246 REMIRD--EVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 246 ~~m~~~--~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
..++.. .....++|.|++|||||+.++.++-.++.
T Consensus 271 d~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 271 DEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp HHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred HHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 345433 34678999999999999999998776553
No 424
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=60.04 E-value=7.2 Score=45.85 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=19.9
Q ss_pred cCceEEEEEcCCCCCChhHHH
Q 001068 251 DEVNQSIIISGESGAGKTETA 271 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1166)
++.|-||+-.|.+|||||.|+
T Consensus 134 ~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 134 EGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp TTCCEEEEEESSTTSSHHHHH
T ss_pred cCCceEEEEeCCCCCCCCEEe
Confidence 789999999999999999987
No 425
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=60.03 E-value=4.7 Score=42.93 Aligned_cols=33 Identities=30% Similarity=0.336 Sum_probs=24.3
Q ss_pred HHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.|+..++..+ .+||.|++|+|||..+-.++..+
T Consensus 100 ~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 100 KALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp HHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS
T ss_pred HHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence 3555555442 38999999999999988776654
No 426
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=59.95 E-value=4.3 Score=40.53 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCChhHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il 275 (1166)
--|+|.|.+|+|||+..+.++
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999887764
No 427
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=59.95 E-value=14 Score=39.01 Aligned_cols=66 Identities=11% Similarity=0.189 Sum_probs=40.6
Q ss_pred EeCCCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHH-HHHHHHh
Q 001068 209 AINPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI-AMQYLAA 280 (1166)
Q Consensus 209 avNP~k~l~iY~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~-il~yLa~ 280 (1166)
.+.+|..+++ ++.............|..+ =..|+..++.. +.+++.+++|||||.+.-+ ++.++..
T Consensus 27 ~~~~f~~~~l-~~~l~~~l~~~g~~~~~~~--Q~~~i~~~~~g---~~~l~~apTGsGKT~~~~l~~l~~l~~ 93 (242)
T 3fe2_A 27 PVLNFYEANF-PANVMDVIARQNFTEPTAI--QAQGWPVALSG---LDMVGVAQTGSGKTLSYLLPAIVHINH 93 (242)
T ss_dssp CCSSTTTTTC-CHHHHHHHHTTTCCSCCHH--HHHHHHHHHHT---CCEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred ccCCHhhcCC-CHHHHHHHHHCCCCCCCHH--HHHHHHHHhCC---CCEEEECCCcCHHHHHHHHHHHHHHHh
Confidence 3445555553 5666666665554444433 34455555543 4699999999999998655 4555543
No 428
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=59.91 E-value=9 Score=45.81 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=25.3
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
....|+|.|..|+|||+++-.+..+|+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G 129 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKG 129 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 356899999999999999999999998753
No 429
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=59.87 E-value=7 Score=45.81 Aligned_cols=61 Identities=21% Similarity=0.410 Sum_probs=37.2
Q ss_pred EeCCCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHH
Q 001068 209 AINPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI 273 (1166)
Q Consensus 209 avNP~k~l~iY~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~ 273 (1166)
.+.+|..+++ ++..+..........|. .+=..|+..++.. .++.+|+.|++|||||...-+
T Consensus 90 ~~~~f~~~~l-~~~l~~~l~~~g~~~p~--~~Q~~ai~~il~~-~~~~~l~~a~TGsGKT~~~~l 150 (479)
T 3fmp_B 90 SVKSFEELRL-KPQLLQGVYAMGFNRPS--KIQENALPLMLAE-PPQNLIAQSQSGTGKTAAFVL 150 (479)
T ss_dssp CCCCSGGGTC-CHHHHHHHHHTTCCSCC--HHHHHHHHHHTSB-SCCEEEEECCSSSSHHHHHHH
T ss_pred CcCCHHHcCC-CHHHHHHHHHcCCCCCC--HHHHHHHHHHHcC-CCCcEEEEcCCCCchhHHHHH
Confidence 3455555554 45555444443333333 3334566666653 468899999999999988543
No 430
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=59.77 E-value=47 Score=39.91 Aligned_cols=68 Identities=12% Similarity=0.091 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcccc
Q 001068 964 LQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV---WQKQMRSLQSSLSIAKKSLAID 1031 (1166)
Q Consensus 964 Lq~r~~k~e~~l~ekeeen~~L~~eL~~~e~r~~E~e~~~~~~ee~---lqkq~~~LQ~~l~~lk~~Le~~ 1031 (1166)
+++...+.+.+...++.++...+++.++..+....++.+..+++.. .+++..+++++++.++.++...
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444444444444322 3333444444444554444443
No 431
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=59.67 E-value=5.2 Score=51.40 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=24.8
Q ss_pred ceEEEEEcCCCCCChhHHHHHH--HHHHHhcc
Q 001068 253 VNQSIIISGESGAGKTETAKIA--MQYLAALG 282 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~i--l~yLa~~~ 282 (1166)
..+.++|+|++|||||+..|.+ +.+++..|
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G 692 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIG 692 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHhcC
Confidence 4688999999999999999988 56666554
No 432
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=59.64 E-value=6.2 Score=45.06 Aligned_cols=36 Identities=19% Similarity=0.496 Sum_probs=25.6
Q ss_pred CchhH-HHHHHHHHHHHcCceEEEEEcCCCCCChhHHH
Q 001068 235 PHVYA-ITDTAIREMIRDEVNQSIIISGESGAGKTETA 271 (1166)
Q Consensus 235 PHiya-vA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 271 (1166)
-.||. ++.......+ ++.|-||+--|.+|||||.|+
T Consensus 62 ~~Vy~~~~~plv~~~l-~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 62 SDIFDFSIKPTVDDIL-NGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHHHTHHHHHHHT-TTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHh-CCCcceEEEECCCCCCcceEe
Confidence 34554 2333333333 688999999999999999886
No 433
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=59.61 E-value=6.9 Score=44.70 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=19.6
Q ss_pred cCceEEEEEcCCCCCChhHHH
Q 001068 251 DEVNQSIIISGESGAGKTETA 271 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1166)
++.|-||+--|.+|||||.|+
T Consensus 86 ~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 86 MGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp TTCEEEEEEEECTTSSHHHHH
T ss_pred CCCceEEEEeCCCCCCCceEE
Confidence 688999999999999999886
No 434
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=59.59 E-value=50 Score=28.97 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=39.8
Q ss_pred cCcEEEEecCCCCEEeEEEEEec--CCeeEEEcCCCcEEEEeCCCcccC
Q 001068 118 KKLQSWFQLPNGNWELGKILSIS--GTESVISLPEGKVLKVKSENLVSA 164 (1166)
Q Consensus 118 ~~~~vw~~~~~~~~~~~~v~~~~--~~~~~v~~~~g~~~~v~~~~~~~~ 164 (1166)
++..|.+...+|.|-+|+|++++ .+...|...|+....+.-.++.++
T Consensus 29 eGeDVLarwsDGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~~~kdi~~~ 77 (79)
T 2m0o_A 29 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPA 77 (79)
T ss_dssp TTCEEEBCCTTSCCCEEEEEEEETTTTEEEEEETTSCEEEEETTTBCCC
T ss_pred cCCEEEEEecCCCEEeEEEEEeccCCCEEEEEEcCCCeEEEEeeccccc
Confidence 44578999999999999999875 567899999999999988888764
No 435
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=59.46 E-value=4.6 Score=40.56 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCChhHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il 275 (1166)
=.|+|.|.+|+|||+....++
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 369999999999998876654
No 436
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=59.43 E-value=9 Score=43.42 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHH-cCceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 239 AITDTAIREMIR-DEVNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 239 avA~~Ay~~m~~-~~~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
..+......+.. .+..-.|+|+|.+|+|||+.+..+..+|+..+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g 107 (355)
T 3p32_A 63 EQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERG 107 (355)
T ss_dssp HHHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 445555555542 45567899999999999999999998887543
No 437
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=59.35 E-value=5.7 Score=45.34 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=19.8
Q ss_pred cCceEEEEEcCCCCCChhHHH
Q 001068 251 DEVNQSIIISGESGAGKTETA 271 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1166)
++.|-||+-.|.+|||||.|+
T Consensus 103 ~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 103 NGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp TTCCEEEEEECCTTSSHHHHH
T ss_pred CCCceEEEEeCCCCCCceeee
Confidence 788999999999999999986
No 438
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=59.24 E-value=3.9 Score=50.11 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
.+.+.|.|+||||||+..|++.-.+
T Consensus 117 Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 117 GMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 5789999999999999999886554
No 439
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=59.13 E-value=6.1 Score=45.15 Aligned_cols=21 Identities=48% Similarity=0.648 Sum_probs=19.8
Q ss_pred cCceEEEEEcCCCCCChhHHH
Q 001068 251 DEVNQSIIISGESGAGKTETA 271 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1166)
++.|-||+-.|.+|||||.|+
T Consensus 101 ~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 101 DGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp TTCCEEEEEEESTTSSHHHHH
T ss_pred CCCceEEEEECCCCCCCceEe
Confidence 788999999999999999886
No 440
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=59.02 E-value=4.9 Score=38.98 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=16.8
Q ss_pred EEEEcCCCCCChhHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il 275 (1166)
-|+|.|.+|+|||+....++
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999998866553
No 441
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=59.00 E-value=90 Score=32.23 Aligned_cols=59 Identities=22% Similarity=0.182 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001068 972 EAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAI 1030 (1166)
Q Consensus 972 e~~l~ekeeen~~L~~eL~~~e~r~~E~e~~~~~~ee~lqkq~~~LQ~~l~~lk~~Le~ 1030 (1166)
+..+.+.+..+..|+.++..+......+..+......+...++..||.++..++.....
T Consensus 48 E~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~ 106 (189)
T 2v71_A 48 EAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQ 106 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555566666666655554444
No 442
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=58.91 E-value=4.9 Score=39.59 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCCChhHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il 275 (1166)
.=.|+|.|.+|+|||+....++
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999998876654
No 443
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=58.90 E-value=4.5 Score=42.24 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=15.2
Q ss_pred EEEEcCCCCCChhHHHHH
Q 001068 256 SIIISGESGAGKTETAKI 273 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~ 273 (1166)
-++|+|..|||||..+..
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 468999999999998644
No 444
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=58.87 E-value=6.8 Score=44.88 Aligned_cols=21 Identities=38% Similarity=0.552 Sum_probs=19.7
Q ss_pred cCceEEEEEcCCCCCChhHHH
Q 001068 251 DEVNQSIIISGESGAGKTETA 271 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1166)
++.|-||+-.|.+|||||.|+
T Consensus 87 ~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 87 EGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp TTCCEEEEEECSTTSSHHHHH
T ss_pred cCCeeEEEEeCCCCCCCceEe
Confidence 788999999999999999886
No 445
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=58.83 E-value=8.1 Score=44.69 Aligned_cols=59 Identities=20% Similarity=0.075 Sum_probs=47.2
Q ss_pred eEEeCCCCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 207 LVAINPFKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 207 LiavNP~k~l~iY~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
|-.+||...+++- .-...+.-+|...|.--++-|-+.|-|.+|+|||+.++.|.+..+.
T Consensus 143 l~Pi~P~~R~~le---------------~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 143 LTPDYPRERFILE---------------TDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp SCEECCCSBCCCC---------------CSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCchhhcccc---------------ccchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhh
Confidence 4467888877541 1234667789988988899999999999999999999988888764
No 446
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=58.69 E-value=6.5 Score=44.75 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=20.5
Q ss_pred HcCceEEEEEcCCCCCChhHHH
Q 001068 250 RDEVNQSIIISGESGAGKTETA 271 (1166)
Q Consensus 250 ~~~~~QsIiisGESGaGKTe~~ 271 (1166)
-++.|-||+-.|.+|||||.|+
T Consensus 82 l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 82 LDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp GTTCEEEEEEECSTTSSHHHHH
T ss_pred HCCcceeEEEeCCCCCCCceEe
Confidence 3789999999999999999998
No 447
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=58.57 E-value=7 Score=41.24 Aligned_cols=28 Identities=39% Similarity=0.503 Sum_probs=19.9
Q ss_pred HHHHHHHHcCceEEEEEcCCCCCChhHHHHH
Q 001068 243 TAIREMIRDEVNQSIIISGESGAGKTETAKI 273 (1166)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~ 273 (1166)
.|+..++.. ..+|+.+++|||||.+.-+
T Consensus 59 ~ai~~i~~~---~~~li~apTGsGKT~~~~l 86 (237)
T 3bor_A 59 RAIIPCIKG---YDVIAQAQSGTGKTATFAI 86 (237)
T ss_dssp HHHHHHHTT---CCEEECCCSSHHHHHHHHH
T ss_pred HHHHHHhCC---CCEEEECCCCCcHHHHHHH
Confidence 455555543 4499999999999987443
No 448
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=58.52 E-value=5.6 Score=44.34 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCChhHHHHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAMQYL 278 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il~yL 278 (1166)
...+.|+|.|.+|+|||+.+..+....
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 356899999999999999887776554
No 449
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=58.26 E-value=5.1 Score=38.62 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=17.0
Q ss_pred EEEEEcCCCCCChhHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il 275 (1166)
=.|+|.|.+|+|||+....++
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 358999999999998765544
No 450
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=58.11 E-value=6.1 Score=49.06 Aligned_cols=63 Identities=19% Similarity=0.386 Sum_probs=40.3
Q ss_pred CCCCCCCCHHHHHHhhcCCCCCCchhHHHHHHHHHHHHcCceEEEEEcCCCCCChhHHHHH-HHHHHHh
Q 001068 213 FKKVPLYGNYYIEAYKSKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKI-AMQYLAA 280 (1166)
Q Consensus 213 ~k~l~iY~~~~~~~y~~~~~~~PHiyavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~-il~yLa~ 280 (1166)
|..+++ .+.....++..+. .+++.+=..|+..++.+ ++.+||+|++|||||..+-+ +++.+..
T Consensus 10 ~~~l~l-~~~~~~~l~~~g~--~~l~~~Q~~~i~~~~~~--~~~~lv~apTGsGKT~~~~l~il~~~~~ 73 (715)
T 2va8_A 10 IEDLKL-PSNVIEIIKKRGI--KKLNPPQTEAVKKGLLE--GNRLLLTSPTGSGKTLIAEMGIISFLLK 73 (715)
T ss_dssp GGGSSS-CHHHHHHHHTTSC--CBCCHHHHHHHHTTTTT--TCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHcCC-CHHHHHHHHhCCC--CCCCHHHHHHHHHHhcC--CCcEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence 445553 4566666655332 34455556666663433 67899999999999999855 4566553
No 451
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=58.08 E-value=11 Score=40.53 Aligned_cols=36 Identities=19% Similarity=0.469 Sum_probs=25.0
Q ss_pred HHHHHHHHHcCceEEEEEcCCCCCChhHHHHHH-HHHHHh
Q 001068 242 DTAIREMIRDEVNQSIIISGESGAGKTETAKIA-MQYLAA 280 (1166)
Q Consensus 242 ~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~i-l~yLa~ 280 (1166)
..|+..++.. +.+|+.+.+|||||.+.-+. ++.+..
T Consensus 82 ~~~i~~~~~~---~~~lv~a~TGsGKT~~~~l~~l~~l~~ 118 (262)
T 3ly5_A 82 HKSIRPLLEG---RDLLAAAKTGSGKTLAFLIPAVELIVK 118 (262)
T ss_dssp HHHHHHHHHT---CCCEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC---CcEEEEccCCCCchHHHHHHHHHHHHh
Confidence 4455555553 34999999999999986664 455544
No 452
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=57.76 E-value=5.5 Score=45.01 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=23.7
Q ss_pred HHHHHHHc--CceEEEEEcCCCCCChhHHHHHHHH
Q 001068 244 AIREMIRD--EVNQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 244 Ay~~m~~~--~~~QsIiisGESGaGKTe~~K~il~ 276 (1166)
....++.. .....++|.|++|+|||+.+..+..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34444432 3467899999999999998877653
No 453
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=57.73 E-value=7.2 Score=47.39 Aligned_cols=156 Identities=12% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHhhhhhh--hhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001068 934 CSGDICLLKS--VESKGNDSDEVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEV-- 1009 (1166)
Q Consensus 934 ~~~~lr~~~~--~~~~~~~~~~l~~~~~~l~~Lq~r~~k~e~~l~ekeeen~~L~~eL~~~e~r~~E~e~~~~~~ee~-- 1009 (1166)
....|+..++ ...+..+...+........+.+++..+++.++.+++++....+..|...+....+++++....+++
T Consensus 301 e~qqm~~~a~e~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~ 380 (575)
T 2i1j_A 301 DVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKE 380 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q ss_pred -HHHHHHHHHHHHHHHHhhccccccccccccCCCCcccccccccCCCccCCCCCCCCccCCCcchHHHHHHHHHHHhhhh
Q 001068 1010 -WQKQMRSLQSSLSIAKKSLAIDDSERNSDASVNASDEVEYSWDTGSNCKGQESNGVRPMSAGLSVISRLAEEFDQRSQV 1088 (1166)
Q Consensus 1010 -lqkq~~~LQ~~l~~lk~~Le~~e~~r~~~~~~~~~~~~d~~~~~~s~~~~s~~~~~~~~~~~~s~v~~L~~Efe~r~q~ 1088 (1166)
+++....+++++..++.+-.....++.. ++++...
T Consensus 381 ~l~~~~~~~e~~~~~l~~~~~~~~~e~~~--------------------------------------------l~~~~~~ 416 (575)
T 2i1j_A 381 ELEQRQNELQAMMQRLEETKNMEAAERQK--------------------------------------------LEDEIRA 416 (575)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH--------------------------------------------HHHHHHH
Q ss_pred ccccccceeeccCcccccCCCChHHHHHHHHHHHHHHhHHHhhhHHHHHHHhhhcC
Q 001068 1089 FGDDAKFLVEVKSGQVEASLNPDKELRRLKQMFEAWKKDYGSRLRETKVILNKLGS 1144 (1166)
Q Consensus 1089 f~~~a~~l~E~~~~~~~~~~~~~~El~~Lk~~f~~wkkd~~~rlr~~k~~l~~~~~ 1144 (1166)
.+.-+..|.|... -.+.|-++|+.....=+.+ +++||.+|....+
T Consensus 417 ~~~~~~~~~~~~~-------~~~~e~~~~~~~~~~a~~~----~~~~~~~l~~~~~ 461 (575)
T 2i1j_A 417 KQEEVSRIQQEVE-------LKDSETRRLQEEVEDARRK----QDEAAAALLAATT 461 (575)
T ss_dssp --------------------------------CHHHHHH----HHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcc
No 454
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=57.69 E-value=5.3 Score=38.66 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=16.9
Q ss_pred EEEEcCCCCCChhHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il 275 (1166)
-|+|.|.+|+|||+....++
T Consensus 5 ki~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999998866654
No 455
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=57.69 E-value=5.8 Score=45.18 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.8
Q ss_pred cCceEEEEEcCCCCCChhHHH
Q 001068 251 DEVNQSIIISGESGAGKTETA 271 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1166)
++.|-||+--|.+|||||.|+
T Consensus 75 ~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 75 QGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp TTCCEEEEEEESTTSSHHHHH
T ss_pred cCCccceeeecCCCCCCCeEE
Confidence 788999999999999999886
No 456
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=57.68 E-value=3.9 Score=49.34 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
..+.+.|.|+||||||+..|.+.-.+.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457788999999999999998865543
No 457
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=57.63 E-value=3.1 Score=42.54 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=19.5
Q ss_pred CceEEEEEcCCCCCChhHHHHHHH
Q 001068 252 EVNQSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 252 ~~~QsIiisGESGaGKTe~~K~il 275 (1166)
.....|+|.|.+|||||+..+.++
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHh
Confidence 445679999999999998877653
No 458
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=57.51 E-value=4 Score=49.99 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=18.7
Q ss_pred EEEcCCCCCChhHHHHHHHHH
Q 001068 257 IIISGESGAGKTETAKIAMQY 277 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~y 277 (1166)
|.|.|+||||||+..+.|+-.
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSC
T ss_pred EEEECCCCChHHHHHHHHhCC
Confidence 899999999999998888654
No 459
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=57.48 E-value=5.3 Score=38.88 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=17.1
Q ss_pred EEEEEcCCCCCChhHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il 275 (1166)
=-|+|.|.+|+|||+....++
T Consensus 7 ~~i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 358999999999998766543
No 460
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=57.46 E-value=5.4 Score=38.77 Aligned_cols=19 Identities=21% Similarity=0.393 Sum_probs=16.5
Q ss_pred EEEEcCCCCCChhHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIA 274 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~i 274 (1166)
-|+|.|.+|+|||+....+
T Consensus 8 ~i~v~G~~~~GKSsli~~l 26 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRF 26 (170)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5899999999999887665
No 461
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=57.37 E-value=70 Score=28.41 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001068 976 REKEEENDILHQRLQQYESRWSEYEQKMKSM 1006 (1166)
Q Consensus 976 ~ekeeen~~L~~eL~~~e~r~~E~e~~~~~~ 1006 (1166)
....+++...+..+...+.++.+++.+..++
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~eL 57 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRDL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555554443
No 462
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=57.31 E-value=2.7 Score=44.92 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=20.8
Q ss_pred EEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 257 IIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
+.|.|+||||||+..+.|.-.+...+
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~~~ 55 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIPDL 55 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCCT
T ss_pred EEEECCCCCCHHHHHHHHhcccccCC
Confidence 45889999999999998877665433
No 463
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=57.24 E-value=5.4 Score=39.20 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=17.2
Q ss_pred EEEEEcCCCCCChhHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il 275 (1166)
=.|+|.|.+|+|||+....++
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358999999999998766653
No 464
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=56.91 E-value=9.8 Score=43.11 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 254 NQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
.-.|.|.|.+|||||+....++.++...+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~ 102 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERG 102 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcC
Confidence 56799999999999999999999886543
No 465
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=56.86 E-value=75 Score=28.34 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001068 973 AALREKEEENDILHQRLQQYESR 995 (1166)
Q Consensus 973 ~~l~ekeeen~~L~~eL~~~e~r 995 (1166)
-++.+++++|..|.++.+.+...
T Consensus 27 mEieELKekN~~L~~e~~e~~~~ 49 (81)
T 2jee_A 27 MEIEELKEKNNSLSQEVQNAQHQ 49 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444445555555544444443
No 466
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=56.85 E-value=5.3 Score=38.83 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=17.2
Q ss_pred EEEEEcCCCCCChhHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il 275 (1166)
=-|+|.|.+|+|||+....++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358999999999998776554
No 467
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=56.81 E-value=4.9 Score=39.50 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCChhHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il 275 (1166)
=-|+|.|.+|+|||+....++
T Consensus 10 ~~i~v~G~~~~GKssli~~l~ 30 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFI 30 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999876654
No 468
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=56.66 E-value=7.1 Score=44.84 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=19.8
Q ss_pred cCceEEEEEcCCCCCChhHHH
Q 001068 251 DEVNQSIIISGESGAGKTETA 271 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1166)
++.|-||+--|.+|||||.|+
T Consensus 99 ~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 99 QGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp TTCCEEEEEEESTTSSHHHHH
T ss_pred CCCeeeEEeecCCCCCCCEeE
Confidence 688999999999999999886
No 469
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=56.48 E-value=77 Score=28.07 Aligned_cols=68 Identities=15% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q 001068 969 LKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSERN 1036 (1166)
Q Consensus 969 ~k~e~~l~ekeeen~~L~~eL~~~e~r~~E~e~~~~~~ee~lqkq~~~LQ~~l~~lk~~Le~~e~~r~ 1036 (1166)
.++.+++++.-.....--+-+...+..+.+=..++..|-..++.+...++..++.++...++++....
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l~ 77 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSALE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 470
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=56.45 E-value=6.5 Score=44.39 Aligned_cols=21 Identities=48% Similarity=0.618 Sum_probs=19.9
Q ss_pred cCceEEEEEcCCCCCChhHHH
Q 001068 251 DEVNQSIIISGESGAGKTETA 271 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1166)
++.|-||+--|.+|||||.|+
T Consensus 78 ~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 78 DGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp TTCCEEEEEESSTTSSHHHHH
T ss_pred CCCEEEEEeECCCCCCCcEEE
Confidence 789999999999999999886
No 471
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=56.39 E-value=1.2e+02 Score=27.83 Aligned_cols=82 Identities=16% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhcc
Q 001068 953 EVLVKASFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYEQKMKSMEEVW---QKQMRSLQSSLSIAKKSLA 1029 (1166)
Q Consensus 953 ~l~~~~~~l~~Lq~r~~k~e~~l~ekeeen~~L~~eL~~~e~r~~E~e~~~~~~ee~l---qkq~~~LQ~~l~~lk~~Le 1029 (1166)
+..........++..+..++....+++.+...|+.+++.++..+..++.++......+ .+.....+..++++.+.+.
T Consensus 17 e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 17 DKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ccccc
Q 001068 1030 IDDSE 1034 (1166)
Q Consensus 1030 ~~e~~ 1034 (1166)
-.+.+
T Consensus 97 llEEe 101 (101)
T 3u59_A 97 LVEEE 101 (101)
T ss_dssp HHTTC
T ss_pred HHccC
No 472
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=56.39 E-value=7 Score=44.53 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=19.7
Q ss_pred cCceEEEEEcCCCCCChhHHH
Q 001068 251 DEVNQSIIISGESGAGKTETA 271 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1166)
++.|-||+--|.+|||||.|+
T Consensus 87 ~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 87 EGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp TTCCEEEEEECSTTSSHHHHH
T ss_pred CCCceeEEeecCCCCCCCEEe
Confidence 688999999999999999886
No 473
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=56.36 E-value=6.4 Score=45.78 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=19.7
Q ss_pred cCceEEEEEcCCCCCChhHHH
Q 001068 251 DEVNQSIIISGESGAGKTETA 271 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1166)
++.|-||+-.|.+|||||.|+
T Consensus 152 ~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 152 EGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp TTCEEEEEEEESTTSSHHHHH
T ss_pred cCCceeEEeecCCCCCCCeEe
Confidence 688999999999999999886
No 474
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=56.29 E-value=7.5 Score=41.32 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=26.2
Q ss_pred eEEEEEcCC-CCCChhHHHHHHHHHHHhccC
Q 001068 254 NQSIIISGE-SGAGKTETAKIAMQYLAALGG 283 (1166)
Q Consensus 254 ~QsIiisGE-SGaGKTe~~K~il~yLa~~~~ 283 (1166)
-++|+|+|- ||+|||..+-.+++.|...|-
T Consensus 4 mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~ 34 (228)
T 3of5_A 4 MKKFFIIGTDTEVGKTYISTKLIEVCEHQNI 34 (228)
T ss_dssp CEEEEEEESSSSSCHHHHHHHHHHHHHHTTC
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHHHCCC
Confidence 368999987 899999999999999998653
No 475
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=56.16 E-value=4.7 Score=41.28 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=25.4
Q ss_pred HHHHHHHHcCceEEEEEcCCCCCChhHHHHHHHHHHH
Q 001068 243 TAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLA 279 (1166)
Q Consensus 243 ~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa 279 (1166)
.|+..++. ++.+||.+++|+|||..+-.++..+.
T Consensus 40 ~~i~~~~~---~~~~li~~~tGsGKT~~~~~~~~~~~ 73 (216)
T 3b6e_A 40 EVAQPALE---GKNIIICLPTGSGKTRVAVYIAKDHL 73 (216)
T ss_dssp HHHHHHHT---TCCEEEECSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc---CCCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45555553 35699999999999999888776554
No 476
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=55.92 E-value=7.1 Score=44.54 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=25.0
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHhcc
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAALG 282 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~~~ 282 (1166)
....|+|.|++|+|||+.+.+++..++..+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g 91 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG 91 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 456899999999999999999887776543
No 477
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=55.90 E-value=3.2 Score=51.38 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCChhHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il 275 (1166)
..+.+.|.|+||||||+..+.++
T Consensus 347 ~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 347 LGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTSEEEEECSTTSSHHHHHTTTH
T ss_pred CCCEEEEEeeCCCCHHHHHHHHH
Confidence 45788999999999999998765
No 478
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=55.86 E-value=5.7 Score=40.86 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCChhHHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il~ 276 (1166)
.=.|+|.|.+|+|||+....++.
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 44699999999999988776543
No 479
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=55.77 E-value=5 Score=41.38 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=16.6
Q ss_pred EEEcCCCCCChhHHHHHHH
Q 001068 257 IIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il 275 (1166)
|+|+|-+|||||+-+..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la 20 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI 20 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7999999999999887653
No 480
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=55.76 E-value=43 Score=32.47 Aligned_cols=29 Identities=10% Similarity=0.155 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001068 990 QQYESRWSEYEQKMKSMEEVWQKQMRSLQ 1018 (1166)
Q Consensus 990 ~~~e~r~~E~e~~~~~~ee~lqkq~~~LQ 1018 (1166)
..++..+..++..+..+...++.++...|
T Consensus 80 ~~~q~~i~~lE~eL~~~r~em~~ql~EYq 108 (131)
T 3tnu_A 80 AQIQEMIGSVEEQLAQLRCEMEQQNQEYK 108 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555544
No 481
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=55.61 E-value=5.9 Score=45.47 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=19.8
Q ss_pred cCceEEEEEcCCCCCChhHHH
Q 001068 251 DEVNQSIIISGESGAGKTETA 271 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1166)
++.|-||+-.|.+|||||.|+
T Consensus 77 ~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 77 DGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp TTCEEEEEEEECTTSSHHHHH
T ss_pred cCCceEEEEECCCCCCCeEee
Confidence 789999999999999999886
No 482
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=55.46 E-value=5.8 Score=39.04 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=18.2
Q ss_pred ceEEEEEcCCCCCChhHHHHHHH
Q 001068 253 VNQSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il 275 (1166)
+.--|+|.|.+|+|||+....++
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34468999999999998776653
No 483
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=55.43 E-value=5.5 Score=42.09 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCChhHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il 275 (1166)
.=-|+|.|.+|+|||+....++
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHc
Confidence 3468999999999999887765
No 484
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=55.28 E-value=6.5 Score=46.17 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCCChhHHHHHHHHHHHh
Q 001068 253 VNQSIIISGESGAGKTETAKIAMQYLAA 280 (1166)
Q Consensus 253 ~~QsIiisGESGaGKTe~~K~il~yLa~ 280 (1166)
....|+|.|.+|+|||+.+..+...++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999888877664
No 485
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=55.14 E-value=6.1 Score=39.02 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCChhHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il 275 (1166)
=-|+|.|.+|+|||+....++
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~ 39 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFM 39 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 469999999999999866654
No 486
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=55.06 E-value=6.2 Score=38.67 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCChhHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il 275 (1166)
=-|+|.|.+|+|||+....++
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~ 36 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFT 36 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999876654
No 487
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=55.04 E-value=5.6 Score=38.65 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=16.7
Q ss_pred EEEEcCCCCCChhHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il 275 (1166)
-|+|.|.+|+|||+....++
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 48999999999998766654
No 488
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=54.89 E-value=5.1 Score=40.02 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=16.8
Q ss_pred EEEEcCCCCCChhHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il 275 (1166)
-|+|.|.+|+|||+....++
T Consensus 25 ~i~v~G~~~~GKSsli~~l~ 44 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALF 44 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999998876653
No 489
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=54.85 E-value=5.9 Score=38.74 Aligned_cols=20 Identities=30% Similarity=0.611 Sum_probs=16.7
Q ss_pred EEEEcCCCCCChhHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il 275 (1166)
-|+|.|.+|+|||+....++
T Consensus 6 ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHh
Confidence 58999999999998766553
No 490
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=54.80 E-value=6.3 Score=38.35 Aligned_cols=20 Identities=40% Similarity=0.426 Sum_probs=16.9
Q ss_pred EEEEEcCCCCCChhHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIA 274 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~i 274 (1166)
=-|+|.|.+|+|||+....+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l 27 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRL 27 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 45999999999999876655
No 491
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=54.64 E-value=6.4 Score=40.36 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=17.6
Q ss_pred cCceEEEEEcCCCCCChhHHHHHHH
Q 001068 251 DEVNQSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~K~il 275 (1166)
..+.=-|+|.|.+|+|||.....++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~ 28 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLL 28 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHh
Confidence 3445579999999999998766554
No 492
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=54.62 E-value=6.3 Score=39.11 Aligned_cols=20 Identities=20% Similarity=0.498 Sum_probs=16.9
Q ss_pred EEEEcCCCCCChhHHHHHHH
Q 001068 256 SIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 256 sIiisGESGaGKTe~~K~il 275 (1166)
-|+|.|.+|+|||+....++
T Consensus 6 ki~v~G~~~~GKSsli~~l~ 25 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLI 25 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999998776654
No 493
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=54.59 E-value=6.4 Score=38.10 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=17.1
Q ss_pred EEEEEcCCCCCChhHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il 275 (1166)
=-|+|.|.+|+|||+....++
T Consensus 7 ~~i~v~G~~~~GKssli~~l~ 27 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 358999999999998766654
No 494
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=54.56 E-value=6.5 Score=38.07 Aligned_cols=19 Identities=32% Similarity=0.336 Sum_probs=16.6
Q ss_pred EEEcCCCCCChhHHHHHHH
Q 001068 257 IIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il 275 (1166)
|+|.|.+|+|||.....++
T Consensus 3 i~~~G~~~~GKssl~~~l~ 21 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLK 21 (164)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8999999999999877664
No 495
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=54.54 E-value=6.3 Score=39.42 Aligned_cols=21 Identities=19% Similarity=0.445 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCChhHHHHHHH
Q 001068 255 QSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 255 QsIiisGESGaGKTe~~K~il 275 (1166)
=-|++.|.+|+|||+....++
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~ 42 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLI 42 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 468999999999999876664
No 496
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=54.48 E-value=6.3 Score=39.24 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCCChhHHHHHHH
Q 001068 254 NQSIIISGESGAGKTETAKIAM 275 (1166)
Q Consensus 254 ~QsIiisGESGaGKTe~~K~il 275 (1166)
..-|+|.|.+|+|||+..+.++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4579999999999998776654
No 497
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=54.44 E-value=8 Score=44.63 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=19.7
Q ss_pred cCceEEEEEcCCCCCChhHHH
Q 001068 251 DEVNQSIIISGESGAGKTETA 271 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1166)
++.|-||+--|.+|||||.|+
T Consensus 132 ~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 132 EGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp TTCEEEEEEESCTTSSHHHHH
T ss_pred cCCceEEEEecCCCCCCCeEe
Confidence 688999999999999999986
No 498
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=54.44 E-value=95 Score=29.16 Aligned_cols=44 Identities=20% Similarity=0.339 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001068 980 EENDILHQRLQQYESRWSE---YEQKMKSMEEVWQKQMRSLQSSLSI 1023 (1166)
Q Consensus 980 een~~L~~eL~~~e~r~~E---~e~~~~~~ee~lqkq~~~LQ~~l~~ 1023 (1166)
+.+.-|++++.-|+..... ..+++.+..+.++.+++.||.++..
T Consensus 62 E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 62 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 4667788888888776553 3456777778899999999987654
No 499
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=54.34 E-value=7.4 Score=44.25 Aligned_cols=21 Identities=43% Similarity=0.559 Sum_probs=20.0
Q ss_pred cCceEEEEEcCCCCCChhHHH
Q 001068 251 DEVNQSIIISGESGAGKTETA 271 (1166)
Q Consensus 251 ~~~~QsIiisGESGaGKTe~~ 271 (1166)
++.|-||+-.|.+|||||.|+
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 82 DGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp GTCCEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEEECCCCCCCcEec
Confidence 788999999999999999997
No 500
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=54.25 E-value=6.4 Score=39.08 Aligned_cols=20 Identities=30% Similarity=0.410 Sum_probs=0.0
Q ss_pred EEEcCCCCCChhHHHHHHHH
Q 001068 257 IIISGESGAGKTETAKIAMQ 276 (1166)
Q Consensus 257 IiisGESGaGKTe~~K~il~ 276 (1166)
|+|.|.+|+|||+....++.
T Consensus 14 i~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Done!