Query 001069
Match_columns 1166
No_of_seqs 345 out of 1057
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 14:58:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001069.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001069hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03076 ARF guanine nucleotid 100.0 7E-205 2E-209 1967.6 99.7 1097 1-1166 1-1120(1780)
2 KOG0929 Guanine nucleotide exc 100.0 8E-165 2E-169 1532.7 60.5 972 15-1166 1-974 (1514)
3 KOG0928 Pattern-formation prot 100.0 6E-116 1E-120 1070.8 69.9 890 66-1165 64-983 (1386)
4 COG5307 SEC7 domain proteins [ 100.0 4.2E-69 9.1E-74 670.2 30.0 562 404-1035 2-590 (1024)
5 cd00171 Sec7 Sec7 domain; Doma 100.0 6.4E-53 1.4E-57 444.4 20.0 183 663-845 1-185 (185)
6 PF01369 Sec7: Sec7 domain; I 100.0 1.3E-52 2.8E-57 444.9 18.9 185 661-845 2-190 (190)
7 smart00222 Sec7 Sec7 domain. D 100.0 4.5E-52 9.8E-57 439.2 20.2 183 663-845 2-187 (187)
8 KOG0930 Guanine nucleotide exc 100.0 1.3E-52 2.9E-57 440.9 14.8 192 661-852 59-250 (395)
9 KOG0931 Predicted guanine nucl 100.0 2.8E-51 6.2E-56 453.6 12.8 193 664-856 198-396 (627)
10 PF12783 Sec7_N: Guanine nucle 100.0 9.3E-34 2E-38 295.6 17.7 162 393-555 2-168 (168)
11 KOG0932 Guanine nucleotide exc 100.0 3.6E-31 7.9E-36 300.1 13.4 164 687-850 297-462 (774)
12 KOG1848 Uncharacterized conser 100.0 2.9E-29 6.3E-34 307.8 16.8 369 8-567 6-420 (1610)
13 KOG1848 Uncharacterized conser 95.1 0.077 1.7E-06 69.2 9.8 186 914-1148 520-758 (1610)
14 PF12348 CLASP_N: CLASP N term 85.8 13 0.00029 40.4 13.8 106 425-536 21-126 (228)
15 PF09324 DUF1981: Domain of un 68.7 3.5 7.5E-05 38.6 2.2 28 996-1023 38-65 (86)
16 PF10274 ParcG: Parkin co-regu 47.8 14 0.00031 39.5 2.7 38 70-107 79-116 (183)
17 PTZ00429 beta-adaptin; Provisi 40.0 1E+03 0.022 31.4 24.6 123 430-567 272-397 (746)
18 PF12348 CLASP_N: CLASP N term 40.0 1.7E+02 0.0037 31.8 9.8 105 15-150 90-194 (228)
19 cd03565 VHS_Tom1 VHS domain fa 39.5 2.8E+02 0.0061 28.4 10.6 63 471-533 51-115 (141)
20 COG5307 SEC7 domain proteins [ 32.2 28 0.00061 46.5 2.4 52 517-568 161-213 (1024)
21 PF12719 Cnd3: Nuclear condens 32.0 7.3E+02 0.016 28.4 13.8 159 16-212 23-184 (298)
22 cd03568 VHS_STAM VHS domain fa 30.9 4.1E+02 0.0088 27.4 10.1 67 463-532 41-109 (144)
23 PF12830 Nipped-B_C: Sister ch 29.4 1.6E+02 0.0035 31.5 7.3 91 69-185 6-96 (187)
24 cd03567 VHS_GGA VHS domain fam 28.2 6.6E+02 0.014 25.8 11.1 70 462-532 41-115 (139)
25 PF14664 RICTOR_N: Rapamycin-i 27.5 3.8E+02 0.0082 32.1 10.6 123 445-597 10-136 (371)
26 KOG2758 Translation initiation 26.9 1.1E+02 0.0024 35.6 5.5 46 423-469 207-259 (432)
27 PF01602 Adaptin_N: Adaptin N 25.8 1.7E+02 0.0036 36.0 7.6 108 17-163 115-222 (526)
28 cd00020 ARM Armadillo/beta-cat 23.0 2.2E+02 0.0047 26.7 6.3 107 72-203 8-118 (120)
29 cd03561 VHS VHS domain family; 22.0 8.1E+02 0.018 24.6 10.6 69 463-532 41-111 (133)
30 PF09724 DUF2036: Uncharacteri 22.0 2.8E+02 0.006 32.4 8.0 132 691-838 135-279 (325)
31 PLN03076 ARF guanine nucleotid 22.0 1.4E+02 0.003 42.7 6.2 92 925-1023 1129-1230(1780)
32 PF14677 FANCI_S3: FANCI solen 21.0 6.7E+02 0.015 27.8 10.2 93 930-1025 80-178 (219)
No 1
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=100.00 E-value=7.1e-205 Score=1967.62 Aligned_cols=1097 Identities=57% Similarity=0.902 Sum_probs=887.2
Q ss_pred CCCCCCCCCCcccccchhHHHHHHHhhhhhccchhHHHHHHHHHHHhhcCCCC-------------CCCccccccc----
Q 001069 1 MSASQTLGGPSRCGRAVGPSLDKIIKNAAWRKHAHLVSSCKSVLDKLDSISDD-------------PSQVSSSLFG---- 63 (1166)
Q Consensus 1 ~~~~~~~~~~~~~~~~l~~~L~~i~~e~~~rK~~~Lr~A~e~al~~lk~~~~~-------------~~~~~~~~~~---- 63 (1166)
|+.+.+ +++++.||+++|++|+++|++|||++||+||++||+.|+..... .+.+|+|+..
T Consensus 1 ~~~~~~---~~~~~~~~~~ale~i~~~k~~rk~~~l~~a~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (1780)
T PLN03076 1 MASSEA---DSRLGKVVSPALEKIIKNASWRKHSKLAHECKAVIERLNSPEKNPPSTSSAAADSASASSLPGPLHDGGSI 77 (1780)
T ss_pred CCcccc---cchhhHHHHHHHHHHHhhHHhhccHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccc
Confidence 444444 99999999999999999999999999999999999999976532 1234445442
Q ss_pred -CCccCchhcHHHHHHhhcCCCcchHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCcccchHHHHHHHHHHhhc
Q 001069 64 -LSQNDAGLVLHPIFLALDSAYPKVVEPALECAFKLFSLGLARGEIEGESDNTNTTSTTNTNQKNFNIIYKLIEAICKVC 142 (1166)
Q Consensus 64 -~~~~~~~~i~~Pf~lAC~tk~~kl~~~aLdclqKLIs~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lid~iie~Ic~c~ 142 (1166)
++..+|+.||.||++||+||++||+.+|||||||||+||||.|+.++.++ +..+|||++|++||+|+
T Consensus 78 ~~~~~~~~~i~~pl~lac~s~~~ki~~~ALdcl~KLis~~~i~~~~~~~~~------------~~~~lid~~i~~Ic~c~ 145 (1780)
T PLN03076 78 EYSLAESELILSPLINACGTGSAKIVDPALDCIQKLIAHGYLRGEADPSGG------------PEALLLAKLIESVCKCH 145 (1780)
T ss_pred cccccCHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhcCCCCCCCCC------------ccccHHHHHHHHHHhhc
Confidence 23357999999999999999999999999999999999999997654322 25689999999999999
Q ss_pred CCCCCcchhHHHHHHHHHhhcCCcccchHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHhhhccccCCCCcc
Q 001069 143 GIGEEPIELSVLRVLLSAVRSPCLLIRGDCLLLIVRTCYNVYLGGSSGTNQICAKSVLAQIMVIVFTRVEEDSMNVPHFK 222 (1166)
Q Consensus 143 ~~~de~VqLqILk~Llt~v~s~~~~vHg~~Ll~avrtCynI~l~Sk~~~nq~tA~ATLtQmi~~VF~Rv~~~~~~~~~~~ 222 (1166)
+.+||.|||||||+||++|++++|.|||++||+|||||||||+.||+++||+||||||||||++||+||+.+....+ .+
T Consensus 146 ~~~de~iqLqilk~Ll~~v~s~~~~vhg~~LLkaVR~cyni~l~Sks~~nq~tA~atLtQmv~~VF~R~e~~~~~~~-~~ 224 (1780)
T PLN03076 146 DLGDEGIELLVLKTLLSAVTSTSLRIHGDCLLQAVRTCYDIYLGSKNVVNQTTAKASLIQMLVIVFRRMEADSSTVP-IQ 224 (1780)
T ss_pred cCCchHHHHHHHHHHHHHHcCCCceeEHHHHHHHHHHhheeeecCCcHHHHHHHHHHHHHHHHHHHHHhhccccccc-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987643222 33
Q ss_pred cchhhhhhhhhcccCCCCCccccccccccccccCCCCCCchhhhhhhhcccCCCCCCCCCccccccccchhcccccCCcc
Q 001069 223 TISVSELLEFADKSLNEGSSIHFCQNFINEVMGASEGVFEPAMLQLKQNVSTKLPNGDTEVATEDEKGEVVKEGEKGEGE 302 (1166)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1166)
++.+++.+++.+.+..+++..+.+|.++++++.+.++..++... .+......+ .|+.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-----------------~~~~~ 282 (1780)
T PLN03076 225 PIVVAELMEPAEKSDSDTSMTQFVQGFITKIMQDIDGVLNPATA-----GKSSGSGAH-----------------DGAFE 282 (1780)
T ss_pred ccccccccccccccccccchhhhhhhhhhhhccccccccCcccc-----ccccccccc-----------------ccccc
Confidence 44444445555555555556667888888777666544322110 000000000 00000
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCcCCCcccccCccCCCCCCCCCCcCCCcccccCccCccccccccCCCCCCCCC
Q 001069 303 VAKEGENGGGRVPKEGETGEGQVPKEGEKGGGQALKEGEKGEGQAPKEGKEGEGQVLKDDEKGEDRVVKEGEKGEGGEGQ 382 (1166)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (1166)
......+.. +.+......... ..+.. ....+.....+ ..+.+..+.+...++
T Consensus 283 ------~~~~~~~~~---~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~---------~~~~~~~~~~~~~~~----- 334 (1780)
T PLN03076 283 ------TTATVETTN---PADLLDSTDKDM----LDAKY-WEISMYKSALE---------GRKGELADGEVEKDD----- 334 (1780)
T ss_pred ------cccccCCCC---cchhhccccccc----ccccc-ccccccccccc---------ccccccccccccccc-----
Confidence 000000000 000000000000 00000 00000000000 000110010100000
Q ss_pred CCCCCCCCCcchhhhhHHHHHHHHHhcccCCCCCCCCcchhhhhhhHHHHHHHHHHHHcCCccccCcHHHHHHHHHHHHH
Q 001069 383 GNGGAELGGESKIREDGFLLFKNICKLSMKFSSQENPDDLILLRGKILSLELLKVVTDNGGPVWLSNARFLIAIKQFLCL 462 (1166)
Q Consensus 383 ~~~~~~~~~~~~~~~Da~lvF~~LC~Ls~~~~~~~~~~d~~~lrsk~l~LeLi~~iLe~~~~~f~~~~~l~~lik~~Lc~ 462 (1166)
..++++.+.+++|||+|||.||+|++|+.+.+...|++.||+|++|||||+++|+++|++|.+||.|+.+||+|||.
T Consensus 335 ---~~~~~~~~~~~kDAflvFr~lCkLs~K~~~~~~~~d~~~~rsKllsL~Li~~ile~~g~~f~~~~~fi~~ik~~Lc~ 411 (1780)
T PLN03076 335 ---DLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEALADPQLMRGKILALELLKILLENAGAVFRTSDRFLGAIKQYLCL 411 (1780)
T ss_pred ---hhhhhhhhhhhhhHHHHHHHHHHHhCCCCCCCccccHHHHHHHHHHHHHHHHHHhcccHhhhcCHHHHHHHHHHHHH
Confidence 12334457899999999999999999998877667889999999999999999999999999999999999999999
Q ss_pred HHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhcChhHHHHHh
Q 001069 463 SLLKNSALSVMAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVF 542 (1166)
Q Consensus 463 ~Llrn~~s~~~~vf~~slrif~~L~~~~r~~LK~EiEvfl~~lil~iLe~~~~~~~~qk~l~LE~l~~l~~~p~~l~ely 542 (1166)
+|+||+.|++++||+++|+||++|+.+||.|||.|||+||+.|+++++++.+++++.||+++|++|.+||++|++++|||
T Consensus 412 sL~~n~~S~~~~vf~lsl~If~~L~~~~R~~LK~eievF~~~I~l~ile~~~~~s~~qK~~~L~~L~~lc~dp~~lveiy 491 (1780)
T PLN03076 412 SLLKNSASSLMIIFQLSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQKMIVLRFLDKLCVDSQILVDIF 491 (1780)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999998766789999999999999999999999999
Q ss_pred HhcCCCCCCccHHHHHHHHHHhhccCCCCCCCCCCCchhhHHhhhhhHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCC-
Q 001069 543 VNYDCDVDSPNIFERIVNGLLKTALGPPPGSTTSLSPAQDIAFRYESVKCLVSIIRSMGTWMDQQLRIGETYLPKGSET- 621 (1166)
Q Consensus 543 ~NYDCd~~~~nIfe~li~~Lsk~a~~~~~~~~~~~~~~q~~~l~~~aL~~L~~il~sl~~~~~~~~~~~~~~~~~~~~~- 621 (1166)
+|||||.++.||||+|++.|+|+|++.+++.+++..++||..||..||+||++||+||.+|+++....++.......+.
T Consensus 492 vNYDCD~~~~NifE~lv~~Lsk~a~~~~~~~~~~~~~~qe~~lk~~aLecLv~il~sl~~w~~~~~~~~~~~~~~~~~~~ 571 (1780)
T PLN03076 492 INYDCDVNSSNIFERMVNGLLKTAQGVPPGVETTLLPPQEAAMKLEAMKCLVAILRSMGDWMNKQLRLPDPASLKKLDAV 571 (1780)
T ss_pred hccCCCCCCchHHHHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchhh
Confidence 9999999999999999999999999987776777788999999999999999999999999987654333211111110
Q ss_pred CCCCCCCCCC--CC-CCCCCCCcccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHhcCCCCCCHHHH
Q 001069 622 DSSIDNNSIP--NG-EDGSVPDYEFHAEVNPEFSDAATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEV 698 (1166)
Q Consensus 622 ~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~k~~K~~l~~~~~~FN~~pk~gi~~L~~~~~i~~~p~~i 698 (1166)
..+....+.+ ++ .+....+.+..++.+...++++.|+++|++|..+++|+.+||+|||+||+||+++|+++++|++|
T Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~K~~l~~g~~~FN~~Pk~Gi~~L~~~~~i~~~p~~i 651 (1780)
T PLN03076 572 ENNLEPGSLPVANGNGDENGEGSDSHSELSSETSDAATIEQRRAYKLELQEGISLFNRKPKKGIEFLINANKVGESPEEI 651 (1780)
T ss_pred ccccccccccccccccccccccccccccccccCCcHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHcCCCCCCHHHH
Confidence 0000000000 00 00001111112222334567789999999999999999999999999999999999999999999
Q ss_pred HHHhHcCCCCChhHHhhhccccchHHHHHHHHHHhcCCCCCCChHHHHHHHHccCcCCCchHHHHHHHHHHHHHhhhcCC
Q 001069 699 ASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNP 778 (1166)
Q Consensus 699 A~fL~~~~~L~k~~iGeyLg~~~~~~~~vl~~y~~~fdf~~~~i~~ALR~fl~~frLPgE~Q~Idri~e~Fa~~y~~~Np 778 (1166)
|+||++++||||++||||||++++++.+||++|++.|||+|++||+|||.||++||||||+|+||||||+||+|||+|||
T Consensus 652 A~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~fdF~g~~~d~ALR~fL~~FrLPGEaQ~IdRime~Fa~rY~~~Np 731 (1780)
T PLN03076 652 AAFLKDASGLNKTLIGDYLGEREDLSLKVMHAYVDSFDFQGMEFDEAIRAFLQGFRLPGEAQKIDRIMEKFAERYCKCNP 731 (1780)
T ss_pred HHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhCCcCCCCHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHhhhhhccccccccCCCCHHHHHHhhccCCCCCCCCHHHHHHHHHHHhhCccccCCCCCCchhhh
Q 001069 779 SSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAPESKQ 858 (1166)
Q Consensus 779 ~~f~~~d~~y~LaysiimLnTDlHn~~vk~kmt~~~Fi~n~rg~~~g~d~~~~~L~~iY~~I~~~ei~~~~~~~~~~~~~ 858 (1166)
+.|.|+|+||+||||+||||||+|||+||+|||+++|+||+||+|+|+|||+|||++||++|+++||++++|+.++.+++
T Consensus 732 ~~f~~~D~~yvLaysiIMLnTDlHnp~vk~kMt~~~Fi~n~rgin~g~dlp~e~L~~iY~~I~~~ei~~~~~~~~~~~~~ 811 (1780)
T PLN03076 732 KAFSSADTAYVLAYSVIMLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLPEEFMRSLYERISKNEIKMKEDDLVPQQKQ 811 (1780)
T ss_pred CcCCCHHHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHhCcccCccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987655544
Q ss_pred hhhhhhhccchhhhhhhhchhHHHHHhhhhHHHHHHHHHHHhhhcCCCCCceEEecCchhhHHHHHHhhHHHHHHHHHhh
Q 001069 859 ANSLNKLLGLDGILNLVIGKQTEEKALGANGLLIRRIQEQFKSKSGKSESLYHAVTDPGILRFMVEVCWGPMLAAFSVTL 938 (1166)
Q Consensus 859 ~~~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~r~Mfe~~W~pilaaLS~~f 938 (1166)
....++..|++++++...|+.+.+.|+++++++++++++.++++..+..+.|+.+++.+|+|+||+++|+|++||||++|
T Consensus 812 ~~~~~~~~g~~~~~~~~~r~~~~e~~~~~s~~l~~~~~~~~k~~~~~~~~~f~~a~~~~~~~~mfe~~W~p~laalS~~~ 891 (1780)
T PLN03076 812 SANSNRILGLDSILNIVIRKRGEDSYMETSDDLIKHMQEQFKEKARKSESVYYAATDVVILRFMVEVCWAPMLAAFSVPL 891 (1780)
T ss_pred ccccchhhhhHHHHhHhhHHHHHHHHHHhHHHHHHHHHHHHHHhhccccCceeecchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667888777777777777789999999999999999877666778999999999999999999999999999999
Q ss_pred hccCcHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhhccCCCcccchhhhHHHHHHHHHHHhhcCCcchhcHHHH
Q 001069 939 DQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAADMKQKNVDAVKAIISIAIEDGNHLQEAWEHI 1018 (1166)
Q Consensus 939 ~~s~d~~~i~~~L~G~~~~i~Ia~~f~l~~~rDafi~sL~kfT~L~~~~~~~~Knv~aik~Ll~Ia~~~Gn~L~~sW~~I 1018 (1166)
++++|+.++..||+||+.||+|||+|||+++||+||.+|||||+|+++.+|++||++|+|+||+||+++||+|++||++|
T Consensus 892 ~~s~d~~~~~~cL~G~~~~i~ia~~f~l~~~rdafv~~L~kfT~L~~~~emk~Knv~Aik~ll~ia~~~Gn~L~~sW~~I 971 (1780)
T PLN03076 892 DQSDDEVVTFQCLEGFRHAIHVTAVMSMKTHRDAFVTSLAKFTSLHSPADIKQKNIDAIKAIVSIADEDGNYLQEAWEHI 971 (1780)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHcCCCChhhhhHHHHHHHHHHHHHHHHhhhHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCcccccccccchhh-hhhccCCCCCccccCCCCCcchhhhhcCCcccccccCCCCCCCCCH
Q 001069 1019 LTCLSRIEHLQLLGEGAPTDASFLTVSNVEADE-KTQKSMGFPSLKKKGTLQNPSVMAVVRGGSYDSTTVGVNSPGLVTP 1097 (1166)
Q Consensus 1019 L~~Is~Le~lqll~~g~~~d~~~~~~~~~~~~~-~~~~~~~~~~l~r~~~~~~~~~~~~~~~~sy~s~~~~~~~~~~~t~ 1097 (1166)
|+||||||||||++.|+.||..++..|..+.+. +..++..+|...++++.+.+......+++++.+...++.....+++
T Consensus 972 L~cISqLerl~Li~~gv~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 1051 (1780)
T PLN03076 972 LTCVSRFEHLHLLGEGAPPDATFFAAPQNESDKSKQAKSPILPVLKRKGPGKLQYAAAAVRRGSYDSAGVGGKASGVVTS 1051 (1780)
T ss_pred HHHHHHHHHHHHhhcCCCcchhhhcccccccccccccccccccccccccccccchhhhhhcccccccccccccccccCCH
Confidence 999999999999999999987665544433322 2233445665555444332222222334555544444445567788
Q ss_pred HHHHhhhhhhhHHhhhcccchhHHHHhccCCCHHHHHHHHHHHHHhhHhhhcCCCCCcchhhhHHHhcC
Q 001069 1098 EQINHFIANLNLLDQIGNFELNHVFAHSQRLNSEAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIA 1166 (1166)
Q Consensus 1098 eei~~~~~~~~vi~~i~s~~id~IF~~S~~L~~eaIv~FVkALc~vS~eEi~~~~~PriFsLqKLVEVa 1166 (1166)
+++.....+..+++.|+++.||+||++|++|+++||++||+|||+||+|||++.++||+||||||||||
T Consensus 1052 ~~~~~~~~~l~~l~~i~~~~idkIF~~S~~L~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa 1120 (1780)
T PLN03076 1052 EQMNNLVSNLNMLEQVGSFEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIA 1120 (1780)
T ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHhcccCCHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHH
Confidence 888877777777888999999999999999999999999999999999999887889999999999996
No 2
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.8e-165 Score=1532.67 Aligned_cols=972 Identities=50% Similarity=0.776 Sum_probs=791.0
Q ss_pred cchhHHHHHHHhhhhhccchhHHHHHHHHHHHhhcCCCCCCCcccccccCCccCchhcHHHHHHhhcCCCcchHHHHHHH
Q 001069 15 RAVGPSLDKIIKNAAWRKHAHLVSSCKSVLDKLDSISDDPSQVSSSLFGLSQNDAGLVLHPIFLALDSAYPKVVEPALEC 94 (1166)
Q Consensus 15 ~~l~~~L~~i~~e~~~rK~~~Lr~A~e~al~~lk~~~~~~~~~~~~~~~~~~~~~~~i~~Pf~lAC~tk~~kl~~~aLdc 94 (1166)
+++.+++++|++++++|+|+.|+++|+.++++++... +...+++.+|.||.+||+||++||+.+|+||
T Consensus 1 ~~v~~~~~ki~~~~~~~~~s~l~~~~~~~~~~~~~~~------------~~~~~~e~~~~p~~la~~t~~~ki~~~~~dc 68 (1514)
T KOG0929|consen 1 MFVSSALEKILADAEWRKHSKLKKACKSALEELKANG------------LSLAEAELYLLPFELACDTKSPKIVSPALDC 68 (1514)
T ss_pred CCccccHHHHhhhhhhhhHHHHHHHHHHHHHhhhccc------------CCCcchhhhhChHHhhcCCCCcchhccHHHH
Confidence 4788999999999999999999999999999999922 1236899999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCCCCCCCCCcccchHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHhhcCCcccchHHHH
Q 001069 95 AFKLFSLGLARGEIEGESDNTNTTSTTNTNQKNFNIIYKLIEAICKVCGIGEEPIELSVLRVLLSAVRSPCLLIRGDCLL 174 (1166)
Q Consensus 95 lqKLIs~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lid~iie~Ic~c~~~~de~VqLqILk~Llt~v~s~~~~vHg~~Ll 174 (1166)
+||||+||++.|++.+.|+ +...||++++++||.|++..||.||||++|+||++|++.++.|||++|+
T Consensus 69 ~~kli~~~~l~g~~~~~~~------------~~~~l~~~~~~~vc~~~~~~~e~~elq~~k~lL~av~s~~~~i~~~~ll 136 (1514)
T KOG0929|consen 69 LQKLIAYGHLTGESNDSGG------------PEDLLIDKIIEAVCKCFDGLDESVELQVLKALLAAVTSQHIEIHGDSLL 136 (1514)
T ss_pred HHHHHHhhhccCCCCCCCC------------cchhHHHHHHhHhhhccCCCchhhhHhHHHHHHHHHhccceeecCcchH
Confidence 9999999999999877654 3678999999999999988899999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHhhhccccCCCCcccchhhhhhhhhcccCCCCCccccccccccccc
Q 001069 175 LIVRTCYNVYLGGSSGTNQICAKSVLAQIMVIVFTRVEEDSMNVPHFKTISVSELLEFADKSLNEGSSIHFCQNFINEVM 254 (1166)
Q Consensus 175 ~avrtCynI~l~Sk~~~nq~tA~ATLtQmi~~VF~Rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~ 254 (1166)
.+||+|||||+.| ++||+||+|||+||+++||.||+.+....+ .+.+++.+.. ..++++.+++|.++..++
T Consensus 137 ~~vr~c~~iyl~s--~~nq~~ak~~L~qml~~vf~~~e~~~~~~~---~i~vs~~~~~----~~~~~s~~~~~~~i~~i~ 207 (1514)
T KOG0929|consen 137 LIVRTCYNIYLGS--PINQTTAKATLTQMLNIVFRRMEEDSSDES---QILVSELLRV----SDDPSSTEFVQQFIDSIM 207 (1514)
T ss_pred HHHHHHHHHHhcC--cccchHHHHHHHHHHHHHHHHhhhccCccc---cccccccccc----CCCcchhHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999998752211 1222332221 112223344454555444
Q ss_pred cCCCCCCchhhhhhhhcccCCCCCCCCCccccccccchhcccccCCccccccCCCCCCCCCCCCCCCCCCCCCCCCcCCC
Q 001069 255 GASEGVFEPAMLQLKQNVSTKLPNGDTEVATEDEKGEVVKEGEKGEGEVAKEGENGGGRVPKEGETGEGQVPKEGEKGGG 334 (1166)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (1166)
+...+. +. .+.. ..+.++..++. .+.
T Consensus 208 ~~~~~~--~~----------~~~~---~~~~~~~~~~~-------------------------------------~~~-- 233 (1514)
T KOG0929|consen 208 EVLVAS--PE----------DVGL---TEMLDDNVNEN-------------------------------------SKT-- 233 (1514)
T ss_pred HhccCC--cc----------cccc---ccccccccccc-------------------------------------ccc--
Confidence 443221 00 0000 00000000000 000
Q ss_pred cccccCccCCCCCCCCCCcCCCcccccCccCccccccccCCCCCCCCCCCCCCCCCCcchhhhhHHHHHHHHHhcccCCC
Q 001069 335 QALKEGEKGEGQAPKEGKEGEGQVLKDDEKGEDRVVKEGEKGEGGEGQGNGGAELGGESKIREDGFLLFKNICKLSMKFS 414 (1166)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Da~lvF~~LC~Ls~~~~ 414 (1166)
+. ..+.+..+......+.++ ....++.+.+++|||+|||.||+|++++.
T Consensus 234 -----~~------------------~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~Daflvfr~Lckls~k~~ 282 (1514)
T KOG0929|consen 234 -----GD------------------SLSLRDAESPESESERDD--------DSERSSQNKLQRDAFLVFRALCKLSMKPL 282 (1514)
T ss_pred -----Cc------------------ccccCcccccccccccCc--------chhhccccHHHHhHHHHHHHHHHhhCCCC
Confidence 00 000000000000001100 12334558999999999999999999998
Q ss_pred CCCCCcchh-hhhhhHHHHHHHHHHHHcCCccccCcHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHH
Q 001069 415 SQENPDDLI-LLRGKILSLELLKVVTDNGGPVWLSNARFLIAIKQFLCLSLLKNSALSVMAVFQLQCSIFMSLLSKYRSG 493 (1166)
Q Consensus 415 ~~~~~~d~~-~lrsk~l~LeLi~~iLe~~~~~f~~~~~l~~lik~~Lc~~Llrn~~s~~~~vf~~slrif~~L~~~~r~~ 493 (1166)
+.+ ..|.. .||+|+++||||..+|++++++|.++..|+..+|+|||.+|.||..|+.+++|+++|.||+.|+.+||.+
T Consensus 283 s~~-~~d~~s~~R~k~lsl~ll~~il~~~~~vf~s~~~fi~aikqyKOGalskn~vS~~~~vfe~s~~If~~lls~~r~~ 361 (1514)
T KOG0929|consen 283 SSE-ESDTQSHMRSKLLSLELLKSILENSGSVFRSNEHFIDAIKQYLCLALSKNSVSNVPMVFELSCTIFVSLLSNFRTH 361 (1514)
T ss_pred CCC-CCChHHHHhhhHHHHHHHHHHHhccchhhcCchhhHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHhcccc
Confidence 875 33432 3999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhcChhHHHHHhHhcCCCCCCccHHHHHHHHHHhhccCCCCCC
Q 001069 494 LKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVFVNYDCDVDSPNIFERIVNGLLKTALGPPPGS 573 (1166)
Q Consensus 494 LK~EiEvfl~~lil~iLe~~~~~~~~qk~l~LE~l~~l~~~p~~l~ely~NYDCd~~~~nIfe~li~~Lsk~a~~~~~~~ 573 (1166)
+|.|+|||++.+++++++..++ ++.||+++|..+.++|.||+.++++|+|||||.+..||||++++.++|.+++. ++.
T Consensus 362 ~K~ei~vff~~i~~~ile~~t~-s~~qk~~~l~~~~~ic~d~q~~Vdi~vnydcd~~~~nifer~v~~ltk~a~g~-~~s 439 (1514)
T KOG0929|consen 362 LKAEIEVFFSEIFLRILENNTS-SFQQKMMVLRILTRICADPQTLVDIYVNYDCDSNSQNIFERLVNGLSKIAQGR-TGS 439 (1514)
T ss_pred cccccccchhhhhhhhhhcCCC-cccchhHHHHHHhhhcCCCccccccccCCccccCCccHHHHHHhhHHHhhcCC-Ccc
Confidence 9999999999999999998855 89999999999999999999999999999999999999999999999999984 355
Q ss_pred CCCCCchhhHHhhhhhHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCC
Q 001069 574 TTSLSPAQDIAFRYESVKCLVSIIRSMGTWMDQQLRIGETYLPKGSETDSSIDNNSIPNGEDGSVPDYEFHAEVNPEFSD 653 (1166)
Q Consensus 574 ~~~~~~~q~~~l~~~aL~~L~~il~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (1166)
.....|.|+..++..++.||+++++++..|.+++...+....+....... ..+.. .++ ..+...++
T Consensus 440 ~~~~~P~~~~~~~~~s~kcL~s~l~s~s~w~~~~~~~~~~~t~~~~~~~~------~~~~~-----~s~---~~~~~~~~ 505 (1514)
T KOG0929|consen 440 NLELSPVQELALRLKSLKCLVSILKSMSGWNDNQLNVEGVITGKKSSTTP------IENEL-----NSD---TQSNDADD 505 (1514)
T ss_pred ccCCCCchhhhHhhhhhhhHHHHHHhhhhhccccccCCCcccCccccCcc------hhhhc-----cCc---cccccccC
Confidence 66778899999999999999999999999998644333222111111000 00000 000 11223356
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHhcCCCCCCHHHHHHHhHcCCCCChhHHhhhccccchHHHHHHHHHHh
Q 001069 654 AATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVD 733 (1166)
Q Consensus 654 ~~~l~~~k~~K~~l~~~~~~FN~~pk~gi~~L~~~~~i~~~p~~iA~fL~~~~~L~k~~iGeyLg~~~~~~~~vl~~y~~ 733 (1166)
++.++..|.+|. +++|+.+||.+|++||+||+++|+++.+|.+||+||..+.+|||+.+|+|||+++++|++||++||+
T Consensus 506 ~~q~e~~k~ek~-l~~~i~~fN~kpkkgi~~l~s~~~v~~sp~eiaeFL~~t~~l~kt~igdyLGe~d~~~~~VMhayVd 584 (1514)
T KOG0929|consen 506 PEQFEALKSEKQ-LQEGIQLFNGKPKKGISFLDSKGTVGTSPLEIAEFLIGTEGLSKTILGDYLGEDDDFNKAVMHAYVD 584 (1514)
T ss_pred hhhhhhhhhhcc-hHHHHHHhccCCccCchhhhhcCCCCCCHHHHHHHHHhccCCCHHHHHHHhcCCcchhHHHHHHHHH
Confidence 778888888888 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHccCcCCCchHHHHHHHHHHHHHhhhcCCC-CCCCchhHHHHHHHHhhhhhccccccccCCCCH
Q 001069 734 SFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPS-SFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTK 812 (1166)
Q Consensus 734 ~fdf~~~~i~~ALR~fl~~frLPgE~Q~Idri~e~Fa~~y~~~Np~-~f~~~d~~y~LaysiimLnTDlHn~~vk~kmt~ 812 (1166)
.|||++++|++|||.||+.||||||+|+|||||++||+|||+|||+ +|.|||+||+|||||||||||+|||+||+|||+
T Consensus 585 ~~dF~~~~~~~ALR~fL~~frLPgEaQkIDRiM~kFS~ry~~cNP~~lFssADtaYVLAfSlIMLnTDlHnp~vKnKMTK 664 (1514)
T KOG0929|consen 585 LFDFKNMSLVEALRKFLEGFRLPGEAQKIDRLMEKFSERYCKCNPGTLFSSADTAYVLAFSLIMLNTDLHNPNVKNKMTK 664 (1514)
T ss_pred hhCcCCCcHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhcCCCccCCCccchHHHHHHHHHHhccccCchhhccccH
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCCCHHHHHHHHHHHhhCccccCCCCCCchhhhhhhhhhhccchhhhhhhhchhHHHHHhhhhHHHH
Q 001069 813 ADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAPESKQANSLNKLLGLDGILNLVIGKQTEEKALGANGLLI 892 (1166)
Q Consensus 813 ~~Fi~n~rg~~~g~d~~~~~L~~iY~~I~~~ei~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~l~ 892 (1166)
+|||+|+||||+|+|+|++||+.+||+|..+||+|.++...+...+.....+..+.++.++...+++.....+...
T Consensus 665 ~dFI~nnrgind~~dlp~e~L~~lYd~I~~~Eikm~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~r~~~~~~s~~---- 740 (1514)
T KOG0929|consen 665 ADFIRNNRGINDGKDLPEEYLEALYDEIEYKEIKMKSDSLLPISSESSNLPKLLGLTGILNLRSNSRMSAIDMSAS---- 740 (1514)
T ss_pred HHHHHhcccccCcccChHHHHHHHHHHhhhccccccccccccccCCCCcchhhhccccccccchhhhhhHHHhhhh----
Confidence 9999999999999999999999999999999999999887665555555666777777776555544332222221
Q ss_pred HHHHHHHhhhcCCCCCceEEecCchhhHHHHHHhhHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Q 001069 893 RRIQEQFKSKSGKSESLYHAVTDPGILRFMVEVCWGPMLAAFSVTLDQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDA 972 (1166)
Q Consensus 893 ~~~~~~~~~~~~~~~~~f~~~~~~~~~r~Mfe~~W~pilaaLS~~f~~s~d~~~i~~~L~G~~~~i~Ia~~f~l~~~rDa 972 (1166)
+..++.+.....+.||.++|.+|+++||+.+|+|+++||+..|+.++|..++..||+||+.+++|++.|+|+..||+
T Consensus 741 ---~~~~~e~~s~~~s~~~~ath~~~Vr~m~e~~W~p~laafs~~~~~sdd~~~~n~cl~g~r~ai~ia~~f~~~~~rdA 817 (1514)
T KOG0929|consen 741 ---QSQLKEKGSLSESVFYSATHLISVRPMFESLWTPMLAAFSVGLQDSDDLEIANLCLDGFRLAISIASIFSMELGRDA 817 (1514)
T ss_pred ---HHHHHHhcccccccceecccceeeeccccccccchhhhhchhhhcCCccccccccccchhheeeehhhhcCCccccH
Confidence 22344444445789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCcccchhhhHHHHHHHHHHHhhcCCcchhcHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhh
Q 001069 973 FVTSVAKFTYLHCAADMKQKNVDAVKAIISIAIEDGNHLQEAWEHILTCLSRIEHLQLLGEGAPTDASFLTVSNVEADEK 1052 (1166)
Q Consensus 973 fi~sL~kfT~L~~~~~~~~Knv~aik~Ll~Ia~~~Gn~L~~sW~~IL~~Is~Le~lqll~~g~~~d~~~~~~~~~~~~~~ 1052 (1166)
||++|++||.|+.+.+|+.||++|+|+++.||.++||++..+|..|+.|++|||++|+++.|++++...+... .
T Consensus 818 fv~al~~ft~l~~~~e~k~kNi~aik~l~~ia~t~gn~l~~sW~~Il~cisqlE~~qli~sg~~~~~~~~~~s----~-- 891 (1514)
T KOG0929|consen 818 FVQALARFTNLHAPSEMKQKNIDAIKALLEIADTDGNKLFDSWLDILKCISQLEHTQLIGSGSPPNKLPFVVS----Q-- 891 (1514)
T ss_pred HHHHHHHHHhccCHHHHhHhhHHHHHHHHHHhhcccchhHhHHHHHHHHHHHHHHHHHhcCCCCcccCcchhh----h--
Confidence 9999999999999999999999999999999999999999999999999999999999999997764322110 0
Q ss_pred hhccCCCCCccccCCCCCcchhhhhcCCcccccccCCCCCCCCCHHHHHhhhhhhhHHhhhcccchhHHHHhccCCCHHH
Q 001069 1053 TQKSMGFPSLKKKGTLQNPSVMAVVRGGSYDSTTVGVNSPGLVTPEQINHFIANLNLLDQIGNFELNHVFAHSQRLNSEA 1132 (1166)
Q Consensus 1053 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~sy~s~~~~~~~~~~~t~eei~~~~~~~~vi~~i~s~~id~IF~~S~~L~~ea 1132 (1166)
+ +.. ...+|+|..+..++.........++ .++- .+|+||++|..|++++
T Consensus 892 --~----~~~-------------~~~~~~~~~~~~~s~~e~~~~~~s~-------s~vi-----~~d~Ift~S~~l~~ea 940 (1514)
T KOG0929|consen 892 --R----EDY-------------KKPGGSYDSSGDGSRIENVGEKSSV-------SVVI-----QMDRIFTSSQRLDSEA 940 (1514)
T ss_pred --c----hhc-------------cCCcccccccccccchhccccchhH-------HHHH-----HhhhhhcccccCCchH
Confidence 0 000 0012333332222111111111111 1121 3689999999999999
Q ss_pred HHHHHHHHHHhhHhhhcCCCCCcchhhhHHHhcC
Q 001069 1133 IVAFVKALCKVSISELQSPTDPRVFSLTKLVEIA 1166 (1166)
Q Consensus 1133 Iv~FVkALc~vS~eEi~~~~~PriFsLqKLVEVa 1166 (1166)
|++||+|||+||++||.++..||+|+|||+||||
T Consensus 941 Iv~FvkaLc~vs~~eL~s~~~PrlfslqK~VeIs 974 (1514)
T KOG0929|consen 941 IVDFVKALCKVSMDELLSPSTPRLFSLQKLVEIS 974 (1514)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCeeecccceeee
Confidence 9999999999999999988899999999999996
No 3
>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-116 Score=1070.76 Aligned_cols=890 Identities=25% Similarity=0.373 Sum_probs=664.1
Q ss_pred ccCchhcHHHHHHhhcCC--CcchHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCcccchHHHHHHHHHHhh-c
Q 001069 66 QNDAGLVLHPIFLALDSA--YPKVVEPALECAFKLFSLGLARGEIEGESDNTNTTSTTNTNQKNFNIIYKLIEAICKV-C 142 (1166)
Q Consensus 66 ~~~~~~i~~Pf~lAC~tk--~~kl~~~aLdclqKLIs~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lid~iie~Ic~c-~ 142 (1166)
..+|.+|+.||..-..+. +..++..||+.++|..+++.|+.+.+. ...-...++.+|..| +
T Consensus 64 ~idp~~~L~PFL~vI~s~~~~g~iTslALssv~Kflt~~iid~~s~n----------------~~~am~~~v~AvthcRF 127 (1386)
T KOG0928|consen 64 TIDPLTYLSPFLEVIKSDETTGPITSLALSSVLKFLTLNIIDESSPN----------------AADAMRNIVDAVTHCRF 127 (1386)
T ss_pred cCChHhHHhHHHHHHhcccCCccHHHHHHHHHHHHheeeecCccCcc----------------HHHHHHHHHHHHHheee
Confidence 367999999999988764 467999999999999999999988643 334567899999999 3
Q ss_pred ----CCCCCcchhHHHHHHHHHhhcCC-cccchHHHHHHHHHHHHh-hccCCchhHHHHHHHHHHHHHHHHHHhhhcccc
Q 001069 143 ----GIGEEPIELSVLRVLLSAVRSPC-LLIRGDCLLLIVRTCYNV-YLGGSSGTNQICAKSVLAQIMVIVFTRVEEDSM 216 (1166)
Q Consensus 143 ----~~~de~VqLqILk~Llt~v~s~~-~~vHg~~Ll~avrtCynI-~l~Sk~~~nq~tA~ATLtQmi~~VF~Rv~~~~~ 216 (1166)
...||.|-|+|||+|.+++.++. ..+-.+.+...|.||+++ +...++.+-|.+|.+|+.-|+-.||.|+..-+.
T Consensus 128 e~td~~Sde~VllkilqvLr~lm~sp~~~lLSnq~Ic~ivqTcl~v~~q~~lselLr~~Ae~Tm~~~~~~IFsrLk~~~~ 207 (1386)
T KOG0928|consen 128 EGTDPASDEVVLLKILQVLRSLMDSPAGALLSNQIICDIVQTCLRVVCQSRLSELLRKSAEHTMHDLTQLIFSRLKYIEP 207 (1386)
T ss_pred eccCccchhHHHHHHHHHHHHHHhCchhhhcchhHHHHHHHHHHHHHHHHhHHHHhhcchhhhHHHHHHHHHHhCccccc
Confidence 35589999999999999999864 567888999999999994 555688899999999999999999999986431
Q ss_pred CCCCcccchhhhhhhhhcccCCCCCccccccccccccccCCCCCCchhhhhhhhcccCCCCCCCCCccccccccchhccc
Q 001069 217 NVPHFKTISVSELLEFADKSLNEGSSIHFCQNFINEVMGASEGVFEPAMLQLKQNVSTKLPNGDTEVATEDEKGEVVKEG 296 (1166)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1166)
+...+. .-..++ +...+..+......+
T Consensus 208 --~~~~~~-----~~~~es-------------~~~~~~~~~~i~~k~--------------------------------- 234 (1386)
T KOG0928|consen 208 --PYVNEM-----YINDES-------------YQGNVLKDDFIGTKR--------------------------------- 234 (1386)
T ss_pred --cccchh-----hcchHh-------------hhcccccccccCccc---------------------------------
Confidence 100111 000000 000000000000000
Q ss_pred ccCCccccccCCCCCCCCCCCCCCCCCCCCCCCCcCCCcccccCccCCCCCCCCCCcCCCcccccCccCccc-cccccCC
Q 001069 297 EKGEGEVAKEGENGGGRVPKEGETGEGQVPKEGEKGGGQALKEGEKGEGQAPKEGKEGEGQVLKDDEKGEDR-VVKEGEK 375 (1166)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 375 (1166)
.++++.. ++. ..++ ++.+......+... ++++ +.++. .+.+ +.
T Consensus 235 -~en~e~~--~~~-~~a~-----~~~~~~~~~~~~~v-~~~~-------------------------~~~~~~~e~a-~~ 278 (1386)
T KOG0928|consen 235 -VENGEIS--SED-ESAT-----FDDGSISEKFEVPV-QQVD-------------------------REQETDEENA-EA 278 (1386)
T ss_pred -CCCCCcc--Ccc-cccc-----cccccccccccCCc-cccc-------------------------cccCChhhhh-hH
Confidence 0000000 000 0000 00000000000000 0000 00000 0000 00
Q ss_pred CCCCCCCCCCCCCCCCcchhhhhHHHHHHHHHhcccCCCCCCCCcchhhhhhhHHHHHHHHHHHHcCCccccCcHHHHHH
Q 001069 376 GEGGEGQGNGGAELGGESKIREDGFLLFKNICKLSMKFSSQENPDDLILLRGKILSLELLKVVTDNGGPVWLSNARFLIA 455 (1166)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~Da~lvF~~LC~Ls~~~~~~~~~~d~~~lrsk~l~LeLi~~iLe~~~~~f~~~~~l~~l 455 (1166)
...+.++| .-+..+|. |..||+|.+...+.. +.-..++++|.||+++++-+|+.|+.||.|+.+
T Consensus 279 --~~~~~~~y------gip~~~~~---~h~l~sl~~~~n~~~-----~~es~~~~~l~lin~aie~~g~~i~~~prll~l 342 (1386)
T KOG0928|consen 279 --MAAMDENY------GIPVMKDI---FHFLLSLLNVTNTVA-----HDESVRSFALVLINSAIELGGDCIREHPRLLRL 342 (1386)
T ss_pred --hhcccccC------CCceeccc---hhhhhhhcccccccc-----chhhhhHHHHHHHHhhHhhcchHHHHhhHHHHH
Confidence 00011111 12334444 555777764432211 122257999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-----ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHH
Q 001069 456 IKQFLCLSLLKNS-----ALSVMAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEK 530 (1166)
Q Consensus 456 ik~~Lc~~Llrn~-----~s~~~~vf~~slrif~~L~~~~r~~LK~EiEvfl~~lil~iLe~~~~~~~~qk~l~LE~l~~ 530 (1166)
|++.++.+++..+ .+-.+.++++-+.++..|...+|.++|.|+|.||+.+..++......||+.|++++||.+..
T Consensus 343 iqd~~fk~l~~~~~~~~k~s~~~~~Lql~~s~vl~l~~~lr~~~k~qle~~Fs~l~~~~~~~~~~~~~~~~e~ale~lv~ 422 (1386)
T KOG0928|consen 343 IQDPLFKHLIEFLQIPTKMSLERLVLQLFCSLVLNLYLALREQLKLQLEAFFSILLLRGTAEEYGPPYEQQEVALEALVL 422 (1386)
T ss_pred hccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHH
Confidence 9999999999988 55577789999999999999999999999999999998888877767899999999999999
Q ss_pred HhcChhHHHHHhHhcCCCCCCccHHHHHHHHHHhhccCCCCCCCCCCCchhhHHhhhhhHHHHHHHHHHHHHHHHhhhhc
Q 001069 531 ISQDSQIIVDVFVNYDCDVDSPNIFERIVNGLLKTALGPPPGSTTSLSPAQDIAFRYESVKCLVSIIRSMGTWMDQQLRI 610 (1166)
Q Consensus 531 l~~~p~~l~ely~NYDCd~~~~nIfe~li~~Lsk~a~~~~~~~~~~~~~~q~~~l~~~aL~~L~~il~sl~~~~~~~~~~ 610 (1166)
+|+.|.|++++|+|||||.+|.||||++++.|+|+++|.....++...++ ++|+ ++.+|.+.+......
T Consensus 423 ~~R~p~F~~e~yvNfDCd~~csnlfedl~k~LtknafP~sg~~tt~~i~~-------l~l~----~v~~l~e~~~~~l~~ 491 (1386)
T KOG0928|consen 423 LCRIPSFLTEMYVNFDCDLYCSNLFEDLIKLLTKNAFPVSGPLTTASILP-------LDLE----GVLGLAENMIDELQD 491 (1386)
T ss_pred HHhccHHHHHHHHhcCCchhhhhhHHHHHHHHHHccCCcccccccccccc-------hHHH----HHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999998754333332222 2233 444555544322110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHhcCC
Q 001069 611 GETYLPKGSETDSSIDNNSIPNGEDGSVPDYEFHAEVNPEFSDAATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKK 690 (1166)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~k~~K~~l~~~~~~FN~~pk~gi~~L~~~~~ 690 (1166)
.+. .+.+. ........+.+.|++|+++..|+++||++|||||+||+++|+
T Consensus 492 ~d~----------------~ef~~--------------~k~e~~v~~iR~rk~K~~li~gae~FNe~pkKGi~fL~ek~l 541 (1386)
T KOG0928|consen 492 SDR----------------EEFWT--------------DKCEVWVLFIRSRKRKRELILGAELFNEDPKKGIEFLQEKGL 541 (1386)
T ss_pred cCc----------------Ccccc--------------CCcchhhhhhccchhhHHHHHHHHHhccChhhHHHHHHhcCc
Confidence 000 00000 000111233444447999999999999999999999999999
Q ss_pred CCC--CHHHHHHHhHcCCCCChhHHhhhccccchHHHHHHHHHHhcCCCCCCChHHHHHHHHccCcCCCchHHHHHHHHH
Q 001069 691 VGD--SPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEK 768 (1166)
Q Consensus 691 i~~--~p~~iA~fL~~~~~L~k~~iGeyLg~~~~~~~~vl~~y~~~fdf~~~~i~~ALR~fl~~frLPgE~Q~Idri~e~ 768 (1166)
|+. +|..+|.||+.+++|||++||+|||++++ .+||++|++.|||+||++|+|||.||++||||||+|+|+||||+
T Consensus 542 i~~~~d~~~~~~ffr~n~rLdKk~iGdfLc~~k~--~~vLn~Fi~tFdF~gmrlDeALRl~L~sFRLPGESQ~IeRVlEA 619 (1386)
T KOG0928|consen 542 IPSDLDPTSVAEFFRYNPRLDKKTIGDFLCDPKN--VSVLNEFIGTFDFQGMRLDEALRLFLESFRLPGESQKIERVLEA 619 (1386)
T ss_pred cCCCCChHHHHHHHHhCccccHHHHHHHhcCcch--HHHHHHHHHhcCcCCCcHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 994 89999999999999999999999999998 79999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCC-CCCCCchhHHHHHHHHhhhhhccccccccCCCCHHHHHHhhccCCCCCCCCHHHHHHHHHHHhhCcccc
Q 001069 769 FAERYCKCNP-SSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKM 847 (1166)
Q Consensus 769 Fa~~y~~~Np-~~f~~~d~~y~LaysiimLnTDlHn~~vk~kmt~~~Fi~n~rg~~~g~d~~~~~L~~iY~~I~~~ei~~ 847 (1166)
||+|||+||+ ++|.++|+||+|||||||||||+||||||+|||++||+||+||+|+|+|||+|||.+||++|+.+||+|
T Consensus 620 FSery~~~n~~~~~~~kDavFvLsYSIIMLNTDqHNpqVK~~MT~dDf~rNlrg~n~g~DFpreyLseiY~SIk~~EIvm 699 (1386)
T KOG0928|consen 620 FSERYYSDNSPDIFADKDAVFVLSYSIIMLNTDQHNPQVKRKMTFDDFIRNLRGINGGKDFPREYLSEIYQSIKTNEIVM 699 (1386)
T ss_pred HHHHHHhcCCCccccccchhhhhhhhhheecccccChhhhccCCHHHHhhhcccccCCCCCCHHHHHHHHHHHhhcceec
Confidence 9999999887 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhhhhhhhhhccchhhhhhhhchhHHHHHhhhhHHHHHHHHHHHhhhcCCCCCceEEecCchhhHHHHHHhh
Q 001069 848 NADSSAPESKQANSLNKLLGLDGILNLVIGKQTEEKALGANGLLIRRIQEQFKSKSGKSESLYHAVTDPGILRFMVEVCW 927 (1166)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~r~Mfe~~W 927 (1166)
|+++.|...+. .+ .|... ..++.+....+.......|+|.||..+|
T Consensus 700 Pee~hG~~~~~----------~~-----~W~~L-------------------~~~sktt~~~~~~~~~~~~drdlF~~v~ 745 (1386)
T KOG0928|consen 700 PEEHHGTEEMF----------EY-----RWINL-------------------ISRSKTTEPFILRDFTLVYDRDLFAMVW 745 (1386)
T ss_pred ccccCCchhhh----------HH-----HHHHH-------------------HhcccccCceeeccchhhhhHHHHHHHc
Confidence 99998766541 12 23211 1123334555555566678999999999
Q ss_pred HHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhhccCCCccc----c------hhhhHHHH
Q 001069 928 GPMLAAFSVTLDQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAAD----M------KQKNVDAV 997 (1166)
Q Consensus 928 ~pilaaLS~~f~~s~d~~~i~~~L~G~~~~i~Ia~~f~l~~~rDafi~sL~kfT~L~~~~~----~------~~Knv~ai 997 (1166)
+|++||++++|+.++++++.++|++|+++|+.|+++||+.+.+|..|.+|||||.|.+|.. . ..|...|.
T Consensus 746 gp~iaals~vFd~a~~d~I~~r~i~g~~k~a~isA~y~l~dv~ddli~slCkfTtL~~~s~~~eel~~~fged~ka~~At 825 (1386)
T KOG0928|consen 746 GPIIAALSYVFDVAESDTILQRCIDGIRKCAKISAYYGLKDVFDDLIISLCKFTTLLNPSSTPEELVLAFGEDTKARMAT 825 (1386)
T ss_pred cchHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccccCCccCchHHHHHhcccchhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987762 1 24778999
Q ss_pred HHHHHHHhhcCCcchhcHHHHHHHHHHHHHHHHhcCCCCCCcccccccccchhhhhhccCCCCCccccCCCCCcchhhhh
Q 001069 998 KAIISIAIEDGNHLQEAWEHILTCLSRIEHLQLLGEGAPTDASFLTVSNVEADEKTQKSMGFPSLKKKGTLQNPSVMAVV 1077 (1166)
Q Consensus 998 k~Ll~Ia~~~Gn~L~~sW~~IL~~Is~Le~lqll~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~ 1077 (1166)
.++|.+++++||+++.+|+.|++|+.+|.+++|++..+.++..+... . .+-...| .+....+.+....+.+
T Consensus 826 ~tvf~~~n~~Gd~i~~gw~nI~~~~l~l~r~~llp~~~~e~~~~~~~------~--~~~~~~~-~~~~~~~~~k~~~ss~ 896 (1386)
T KOG0928|consen 826 LTVFFGANKFGDLIRVGWRNIVECLLQLNRLVLLPLRLIEDLKNEPE------L--LKLNKLP-VPQQEISINKPRKSSG 896 (1386)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHHHHHhhccCcHhhhhhhhcCcc------c--cccCCCC-CCccccCcccccccch
Confidence 99999999999999999999999999999999998776554333221 0 0001111 1111111111011111
Q ss_pred cCCcccccccC--CCCCCCCCHHHHHhhhhhhhHHhhhcccchhHHHHhccCCCHHHHHHHHHHHHHhhHhhhcCCCCCc
Q 001069 1078 RGGSYDSTTVG--VNSPGLVTPEQINHFIANLNLLDQIGNFELNHVFAHSQRLNSEAIVAFVKALCKVSISELQSPTDPR 1155 (1166)
Q Consensus 1078 ~~~sy~s~~~~--~~~~~~~t~eei~~~~~~~~vi~~i~s~~id~IF~~S~~L~~eaIv~FVkALc~vS~eEi~~~~~Pr 1155 (1166)
-.+.|+++.++ ...++.||+|++.+...+.+||+ +|+|++||++|++|..++|++++++|...+...-...++.+
T Consensus 897 Lls~fs~~Ls~d~e~~~~~Ptee~l~~~~~a~~cIk---~c~i~~if~~s~~l~~~~l~~Ll~Sli~~s~~~s~~de~s~ 973 (1386)
T KOG0928|consen 897 LLSRFSSYLSGDEEEERPCPTEEELSASKKALECIK---ECHIDQIFTKSKFLQAKSLLTLLKSLIAASNDLSMEDEESA 973 (1386)
T ss_pred HHHHHHHhcCCcccccCCCCcHHHHhhhHHHhhHHH---hcCHHHHhhhcccccHHHHHHHHHHHHHhcCCccCcccchH
Confidence 12233333333 35578899999999999988877 67999999999999999999999999998887533356789
Q ss_pred chhhhHHHhc
Q 001069 1156 VFSLTKLVEI 1165 (1166)
Q Consensus 1156 iFsLqKLVEV 1165 (1166)
+||+++|+.|
T Consensus 974 ~F~lElli~I 983 (1386)
T KOG0928|consen 974 VFCLELLIAI 983 (1386)
T ss_pred HHHHHHHHHH
Confidence 9999999987
No 4
>COG5307 SEC7 domain proteins [General function prediction only]
Probab=100.00 E-value=4.2e-69 Score=670.20 Aligned_cols=562 Identities=28% Similarity=0.396 Sum_probs=440.3
Q ss_pred HHHHhcccCCCCCC--CCcchhhhhhhHHHHHHHHHHHHcCCccccCcHHHHHHHHHHHHHHHHHhcccCchhHHHHHHH
Q 001069 404 KNICKLSMKFSSQE--NPDDLILLRGKILSLELLKVVTDNGGPVWLSNARFLIAIKQFLCLSLLKNSALSVMAVFQLQCS 481 (1166)
Q Consensus 404 ~~LC~Ls~~~~~~~--~~~d~~~lrsk~l~LeLi~~iLe~~~~~f~~~~~l~~lik~~Lc~~Llrn~~s~~~~vf~~slr 481 (1166)
|.+|....+..+.. .....+.+|++..+|+++.++|..+. .|+.++++++|..+.++..+...|+|+.+|.
T Consensus 2 ~~~~~~~i~~~~~~~~~n~~s~~~r~~l~~l~~~~~~l~~~~-------~l~~~~~~~~~l~~~~~a~s~~~~v~~v~~~ 74 (1024)
T COG5307 2 RVLLVSQISNAPLKNSSNAPSQAVRSKLYSLPVSYSILRDFK-------LLLDLLFPYLRLKLSLSARSPLLPVFEVGLE 74 (1024)
T ss_pred chHHHHHHhhccccccccchhhhcccccccccchHHHhccch-------HHHHHhcchhhhhhhhcccccchhhhhhhHH
Confidence 45666554433322 12345789999999999999998766 7999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhcChhHHHHHhHhcCCCCC-CccHHHHHHH
Q 001069 482 IFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVFVNYDCDVD-SPNIFERIVN 560 (1166)
Q Consensus 482 if~~L~~~~r~~LK~EiEvfl~~lil~iLe~~~~~~~~qk~l~LE~l~~l~~~p~~l~ely~NYDCd~~-~~nIfe~li~ 560 (1166)
|++.++..++.+++.|.++|+..+++.+++.. .++..|+.+-|-..+..|..|+ ++.|+||||... ..|++++...
T Consensus 75 i~~~~~~~~~~~f~~~~~~~f~s~~f~i~~~~-~~s~~q~~~~l~~~~~~~~~~r--l~~~i~~d~~~~~~~~~~~~~~~ 151 (1024)
T COG5307 75 IIGLRLSNLPKLFKLESSVFFISIYFPISHTT-STSLQQKSSELSTSQVVILLSR--LERYINYDVGRGFMENITERTAF 151 (1024)
T ss_pred HHHHHHhhhhhhhhhccchHHHHHhhhhhccc-ccchhhhhHHhHhhhhhhcccc--hhhhcccccccccchhhhhccCC
Confidence 99999999999999999999999999998877 5678899999999999999999 999999999887 8899999999
Q ss_pred HHHhhccCCCCCC---------CCC-CCc------hhhHHhhhhhHHHHHHHHHHHHHHHHhh--hhcCCCCCCCCCCCC
Q 001069 561 GLLKTALGPPPGS---------TTS-LSP------AQDIAFRYESVKCLVSIIRSMGTWMDQQ--LRIGETYLPKGSETD 622 (1166)
Q Consensus 561 ~Lsk~a~~~~~~~---------~~~-~~~------~q~~~l~~~aL~~L~~il~sl~~~~~~~--~~~~~~~~~~~~~~~ 622 (1166)
.+++.+...|+.. ..+ ..+ .-+..++.....|.+.+++++..-.-.. ........+.+.|..
T Consensus 152 ~~s~~~t~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~is~l~~l~~~sl~~s~~~~~~~~~~~s~e~~ 231 (1024)
T COG5307 152 PLSRPSTNDPPETRSLIIEQLSILWISSPYFFLTLISDFQCDLDSSDCSISFLKGLTKNSLVPSAYYTNKDVPPLSGEGL 231 (1024)
T ss_pred ccccccccCCCcchhhhhhhhhhcCCCCCccccccccchhhhhHHHHHHHHHHHHHhhcccchhhhhcccCCCCcccchh
Confidence 9987775544310 000 001 2356688889999999998876211000 000000001111110
Q ss_pred CCCC--CCC-CCCCCCCCCCCcccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHhcCCCCC-CHHHH
Q 001069 623 SSID--NNS-IPNGEDGSVPDYEFHAEVNPEFSDAATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGD-SPEEV 698 (1166)
Q Consensus 623 ~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~k~~K~~l~~~~~~FN~~pk~gi~~L~~~~~i~~-~p~~i 698 (1166)
.... ..+ ..++. .++.+... ..........|++|..+++++..||.+|++||..|.+.+++.. ++.++
T Consensus 232 ~~~~~~~~~~~~~~~------~d~~s~~~--~~~~~~~~~~k~rkt~~~e~~~~fn~kp~~gi~~l~~~~~i~~d~~~si 303 (1024)
T COG5307 232 VSGSKSMVNSMKNSS------RDSSSFVN--SDSSIVNLGIKKRKTELIECIQAFNEKPKKGIASLIDSEFIDSDSHKSI 303 (1024)
T ss_pred hhcCCcccccccccc------cChhhhcc--chHHHhhhccccchHHHHHHHHHhhhcCcccchhhcccccCCcccchHH
Confidence 0000 000 00000 00000000 0111223336889999999999999999999999999999984 78999
Q ss_pred HHHhHcCCC-CChhHHhhhccccchHHHHHHHHHHhcCCCCCCChHHHHHHHHccCcCCCchHHHHHHHHHHHHHhhhcC
Q 001069 699 ASFLKNTTG-LNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCN 777 (1166)
Q Consensus 699 A~fL~~~~~-L~k~~iGeyLg~~~~~~~~vl~~y~~~fdf~~~~i~~ALR~fl~~frLPgE~Q~Idri~e~Fa~~y~~~N 777 (1166)
|.||.++.+ +||+.+|+|||+++..|..||++|+++|||+|++||+|||.||+.||||||+|+||||||+||.+||+||
T Consensus 304 a~~L~~~~~~l~k~~lg~~L~~~~~kn~~vL~~Fi~~fdFk~~~i~eALR~lL~sfrLPgEaQqIDRile~FS~~Y~~~N 383 (1024)
T COG5307 304 AEILEGTEGRLDKKKLGLYLGTDDDKNNAVLREFISLFDFKGLDIDEALRKLLQSFRLPGEAQQIDRILEAFSDKYYSDN 383 (1024)
T ss_pred HHHHHhccCcccHHHHHHHhcCCchhHHHHHHHHHHhcCcCCCcHHHHHHHHHHheecCchHHHHHHHHHHHHHHHHHhC
Confidence 999988765 9999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCc-hhHHHHHHHHhhhhhccccccccCCCCHHHHHHhhccCCCCCCCCHHHHHHHHHHHhhCccccCCCCCCchh
Q 001069 778 PSSFTSA-DTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAPES 856 (1166)
Q Consensus 778 p~~f~~~-d~~y~LaysiimLnTDlHn~~vk~kmt~~~Fi~n~rg~~~g~d~~~~~L~~iY~~I~~~ei~~~~~~~~~~~ 856 (1166)
|..|.++ |+||+||||+||||||+|||++|.|||++||++|+||+|+|+|||++||+++|++|+++||++++++.....
T Consensus 384 p~~~~~~~D~vyiLafSlimLNTDlHNp~iK~kMT~~df~~N~~g~n~g~~~~~~~L~~~Y~~I~~kei~~~e~~~~~~~ 463 (1024)
T COG5307 384 PKKFSSKPDSVYILAFSLIMLNTDLHNPNIKAKMTFEDFSKNLRGENTGRDFPEEFLEEFYDNIKKKEIVLPEEHHSSET 463 (1024)
T ss_pred cccccCccceeehhHHHHHHHhccccChhhhccccHHHHHhhhcccCCccccCHHHHHHHHHHHhhccccchhhcccccc
Confidence 9999998 999999999999999999999999999999999999999999999999999999999999999999875443
Q ss_pred hhhhhhhhhccchhhhhhhhchhHHHHHhhhhHHHHHHHHHHHhhhcCCCCCceEEecCchhhHHHHHHhhHHHHHHHHH
Q 001069 857 KQANSLNKLLGLDGILNLVIGKQTEEKALGANGLLIRRIQEQFKSKSGKSESLYHAVTDPGILRFMVEVCWGPMLAAFSV 936 (1166)
Q Consensus 857 ~~~~~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~r~Mfe~~W~pilaaLS~ 936 (1166)
+... .|..... +...+ . .+.+ .......+.+.++++++|+.+|.|++++++-
T Consensus 464 ~~~~---------------~~~~~~s-----s~~~~---~-~~~r----d~~~~~~~~~f~~v~~~~et~~~~i~~s~s~ 515 (1024)
T COG5307 464 SPED---------------NWPSLDS-----SFTNI---A-EFGR----DNQRVADATHFDHVGPIFETSLFPILMSASD 515 (1024)
T ss_pred cccc---------------cchhhhh-----hhhhh---h-hccc----ccccchhHhhhhhcchHHHHHHHHHHhhhcc
Confidence 3211 1211100 00000 0 0100 1122223466778899999999999999988
Q ss_pred hhhccCcHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhhccCCCcccchhhhHHHHHHHHHHHhhcCCcchhcHH
Q 001069 937 TLDQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAADMKQKNVDAVKAIISIAIEDGNHLQEAWE 1016 (1166)
Q Consensus 937 ~f~~s~d~~~i~~~L~G~~~~i~Ia~~f~l~~~rDafi~sL~kfT~L~~~~~~~~Knv~aik~Ll~Ia~~~Gn~L~~sW~ 1016 (1166)
.+..+.....+ +.|.++|+.|++..++++|+.++++||.|++.. ..+|+++..+|.
T Consensus 516 ~~~~s~~~~si-------~~~~~ia~~f~~n~p~~~~~~~~s~~t~l~~~S-----------------~~~~~~~~~~~~ 571 (1024)
T COG5307 516 DLYSSDGVVSI-------SKCTRIAANFDFNDPRDAFLESLSEFTTLINSS-----------------VSEGPYLFIPSE 571 (1024)
T ss_pred hhcccccchHh-------hcccchhhcceecchhHHHHHHhhccCCccccC-----------------ccccccccCccc
Confidence 88777666544 555569999999999999999999999997653 778999999999
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q 001069 1017 HILTCLSRIEHLQLLGEGA 1035 (1166)
Q Consensus 1017 ~IL~~Is~Le~lqll~~g~ 1035 (1166)
.++.+|+++++.+.++.|.
T Consensus 572 d~~~~is~~~~~~~i~~~~ 590 (1024)
T COG5307 572 DSLLSISVLELAARIGRGF 590 (1024)
T ss_pred cccchhhHHHHHHHhcccc
Confidence 9999999999999999886
No 5
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=100.00 E-value=6.4e-53 Score=444.45 Aligned_cols=183 Identities=60% Similarity=1.012 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHhcCCC-CCCHHHHHHHhHcCCCCChhHHhhhccccchHHHHHHHHHHhcCCCCCCC
Q 001069 663 YKIELQKGISLFNRKPSKGIEFLINSKKV-GDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMD 741 (1166)
Q Consensus 663 ~K~~l~~~~~~FN~~pk~gi~~L~~~~~i-~~~p~~iA~fL~~~~~L~k~~iGeyLg~~~~~~~~vl~~y~~~fdf~~~~ 741 (1166)
+|..+++|+.+||++|++||+||++.+++ .++|++||+||+.+++|||++||+|||++++++.+||++|++.|||+|++
T Consensus 1 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~~iA~fl~~~~~l~k~~ig~~L~~~~~~~~~vL~~y~~~f~f~~~~ 80 (185)
T cd00171 1 RKTLLSEGRQLFNRKPKKGISFLIEKGFLEDDSPKEIAKFLYETEGLNKKAIGEYLGENNEFNSLVLHEFVDLFDFSGLR 80 (185)
T ss_pred CcHHHHHHHHHHccCHHHHHHHHHHCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCchHHHHHHHHHHHhcCCCCCC
Confidence 36789999999999999999999999999 78999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHccCcCCCchHHHHHHHHHHHHHhhhcCCCCCC-CchhHHHHHHHHhhhhhccccccccCCCCHHHHHHhhc
Q 001069 742 FGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFT-SADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNR 820 (1166)
Q Consensus 742 i~~ALR~fl~~frLPgE~Q~Idri~e~Fa~~y~~~Np~~f~-~~d~~y~LaysiimLnTDlHn~~vk~kmt~~~Fi~n~r 820 (1166)
||+|||.||.+|+||||+|+|||||+.||++||+|||+.+. |+|++|+||||+||||||+|||++++|||+++|++|++
T Consensus 81 i~~ALR~~l~~f~lpgE~Q~Idrile~Fs~~y~~~Np~~~~~~~d~v~~l~~sllmLnTdlHn~~~~~kmt~~~Fi~~~~ 160 (185)
T cd00171 81 LDEALRKFLQSFRLPGEAQKIDRLLEKFSERYCECNPGIFSSSADAAYTLAYSIIMLNTDLHNPNVKKKMTLEDFIKNLR 160 (185)
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHCCCCCCCChhHHHHHHHHHHHHhHHhcCcccCCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhCcc
Q 001069 821 GIDDGKDLPEEYLGVLYDQIVKNEI 845 (1166)
Q Consensus 821 g~~~g~d~~~~~L~~iY~~I~~~ei 845 (1166)
|+++|++||+++|++||++|+.+||
T Consensus 161 ~~~~~~~~~~~~L~~iY~~I~~~~~ 185 (185)
T cd00171 161 GINDGEDFPREFLKELYDSIKNNEI 185 (185)
T ss_pred cccCCCCCCHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999987
No 6
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=100.00 E-value=1.3e-52 Score=444.93 Aligned_cols=185 Identities=53% Similarity=0.965 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHHhcCCC--CCCHHHHHHHhHcCCCCChhHHhhhccccchHHHHHHHHHHhcCCCC
Q 001069 661 RAYKIELQKGISLFNRKPSKGIEFLINSKKV--GDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFK 738 (1166)
Q Consensus 661 k~~K~~l~~~~~~FN~~pk~gi~~L~~~~~i--~~~p~~iA~fL~~~~~L~k~~iGeyLg~~~~~~~~vl~~y~~~fdf~ 738 (1166)
|++|..+.+|+.+||.+|++||+||++.|++ +++|.+||+||+.+++|||++||+|||+++++|.+||++|++.|||+
T Consensus 2 k~~k~~l~~~~~~FN~~p~~gi~~l~~~~~~~~~~~~~~iA~fL~~~~~l~k~~ige~Lg~~~~~n~~vL~~y~~~fdf~ 81 (190)
T PF01369_consen 2 KKRKRQLEEGVELFNKNPKKGIEYLIQNGFLENEDDPKSIAKFLFQTPGLDKKKIGEYLGKDNPFNRDVLKEYISLFDFS 81 (190)
T ss_dssp GHHHHHHHHHHHHHHHSHHHHHHHHHHTTSSTS-SSHHHHHHHHHHTTTS-HHHHHHHHTSSSHHHHHHHHHHHHTSS-T
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHhccchHHHHHHHHHHHHcCCc
Confidence 5789999999999999999999999999998 77999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHccCcCCCchHHHHHHHHHHHHHhhhcCCC--CCCCchhHHHHHHHHhhhhhccccccccCCCCHHHHH
Q 001069 739 GMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPS--SFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFI 816 (1166)
Q Consensus 739 ~~~i~~ALR~fl~~frLPgE~Q~Idri~e~Fa~~y~~~Np~--~f~~~d~~y~LaysiimLnTDlHn~~vk~kmt~~~Fi 816 (1166)
|++|++|||.||.+|+||||+|+|||||+.||++||+|||+ .|.|+|+||+|+||+||||||+|||++++|||+++|+
T Consensus 82 ~~~i~~ALR~~l~~f~LpgE~q~idril~~Fs~~y~~~Np~~~~~~~~d~v~~l~~slimLnTdlHn~~~~~kmt~~~Fi 161 (190)
T PF01369_consen 82 GMSIDEALRKFLSSFRLPGESQQIDRILEAFSERYYECNPNSTPFKSPDTVYILAYSLIMLNTDLHNPNIKKKMTKEDFI 161 (190)
T ss_dssp TS-HHHHHHHHCTSS-BTSSHHHHHHHHHHHHHHHHHHTTTGCSSSSHHHHHHHHHHHHHHHHHHH-TTSSSS--HHHHH
T ss_pred CccHHHHHHHhcceeeeccchHHHHHHHHHHHHHHHHhCCcccccccHhHHHHHHHHHHHHhHHHHhhccccCCcHHHHH
Confidence 99999999999999999999999999999999999999996 8999999999999999999999999999999999999
Q ss_pred HhhccCCCCCCCCHHHHHHHHHHHhhCcc
Q 001069 817 RNNRGIDDGKDLPEEYLGVLYDQIVKNEI 845 (1166)
Q Consensus 817 ~n~rg~~~g~d~~~~~L~~iY~~I~~~ei 845 (1166)
+|++|+++|+++|+++|++||++|+++||
T Consensus 162 ~~~~~~~~~~~~~~~~L~~iY~~I~~~~~ 190 (190)
T PF01369_consen 162 KNTRGIDDGKDIPEEFLESIYDSIKANPF 190 (190)
T ss_dssp HHTTTTBTTBS--HHHHHHHHHHHHHS--
T ss_pred HHhhcccCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999986
No 7
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=100.00 E-value=4.5e-52 Score=439.25 Aligned_cols=183 Identities=57% Similarity=0.946 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHhcCCCC-CCHHHHHHHhHcCCCCChhHHhhhccccchHHHHHHHHHHhcCCCCCCC
Q 001069 663 YKIELQKGISLFNRKPSKGIEFLINSKKVG-DSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMD 741 (1166)
Q Consensus 663 ~K~~l~~~~~~FN~~pk~gi~~L~~~~~i~-~~p~~iA~fL~~~~~L~k~~iGeyLg~~~~~~~~vl~~y~~~fdf~~~~ 741 (1166)
+|..+.+|+.+||.+|++||+||++.|++. ++|++||+||+++++|||++||+|||++++++.+||++|++.|||+|++
T Consensus 2 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~vL~~y~~~f~f~~~~ 81 (187)
T smart00222 2 RKKLLSEGSVKFNDKPKKGIDSLQEKGFLAKDDPQDVADFLSKNEGLNKKAIGDYLGEHDEFNRLVLHAFVDLFDFSAKD 81 (187)
T ss_pred chHHHHHHHHHHccCHHHHHHHHHHcCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhcCcCCCc
Confidence 477899999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHccCcCCCchHHHHHHHHHHHHHhhhcCCCCCC--CchhHHHHHHHHhhhhhccccccccCCCCHHHHHHhh
Q 001069 742 FGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFT--SADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNN 819 (1166)
Q Consensus 742 i~~ALR~fl~~frLPgE~Q~Idri~e~Fa~~y~~~Np~~f~--~~d~~y~LaysiimLnTDlHn~~vk~kmt~~~Fi~n~ 819 (1166)
||+|||.||.+|+||||+|+|||||++||++||+|||+.+. |+|++|+|+||+||||||+|||++|+|||+++|++|+
T Consensus 82 i~~ALR~~l~~f~lpgE~q~Idrile~Fs~~y~~~N~~~~~~~~~d~~y~l~~s~lmLnTdlhn~~~k~kmt~~~Fi~~~ 161 (187)
T smart00222 82 LDQALREFLESFRLPGEAQKIDRLLEAFSSRYCECNPSVFSKLNADAAYTLAYSLIMLNTDLHNPNVKKKMTLEDFIKNV 161 (187)
T ss_pred HHHHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHCCCccCCCChhHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999988 9999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhhCcc
Q 001069 820 RGIDDGKDLPEEYLGVLYDQIVKNEI 845 (1166)
Q Consensus 820 rg~~~g~d~~~~~L~~iY~~I~~~ei 845 (1166)
+|+++|.+||+++|++||++|+.+||
T Consensus 162 ~~~~~~~~~~~~~L~~iY~~I~~~~i 187 (187)
T smart00222 162 RGSNDGEDLPREFLEELYDSIKNNEI 187 (187)
T ss_pred hccCCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999986
No 8
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-52 Score=440.92 Aligned_cols=192 Identities=52% Similarity=0.886 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHHhcCCCCCCHHHHHHHhHcCCCCChhHHhhhccccchHHHHHHHHHHhcCCCCCC
Q 001069 661 RAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGM 740 (1166)
Q Consensus 661 k~~K~~l~~~~~~FN~~pk~gi~~L~~~~~i~~~p~~iA~fL~~~~~L~k~~iGeyLg~~~~~~~~vl~~y~~~fdf~~~ 740 (1166)
+++.+.+.-|..+||.+|+|||+||+++.++..+|++||+||+.-.||+|++||+|||++++||++||++|++++.|.++
T Consensus 59 ~q~~k~~~~GRKKFNmDP~Kgiq~l~e~~ll~~dpq~iA~flykGEGLnKtaIG~yLGer~~~nl~vL~aFv~~Hef~dl 138 (395)
T KOG0930|consen 59 KQRNKQVAMGRKKFNMDPKKGIQFLIENDLLQNDPEDIARFLYKGEGLNKTAIGDYLGERDEFNLQVLHAFVDLHEFTDL 138 (395)
T ss_pred HHHhHHHhhchhhcCCChHHHhHHHHHcccccCCHHHHHHHHHhcCCcchhhHhhhhccCchhHHHHHHHHHHHHHhccc
Confidence 44556788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHccCcCCCchHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHhhhhhccccccccCCCCHHHHHHhhc
Q 001069 741 DFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNR 820 (1166)
Q Consensus 741 ~i~~ALR~fl~~frLPgE~Q~Idri~e~Fa~~y~~~Np~~f~~~d~~y~LaysiimLnTDlHn~~vk~kmt~~~Fi~n~r 820 (1166)
+++.|||.||=+||||||+|+|||+||+||+|||-|||++|.|+|++|+|+||+|||||.|||||||.|-+++.||.|||
T Consensus 139 nlVqALRQfLwSFRLPGEaQKIdRmmEaFA~rYclcNPgvfqstDtcyvlsfs~IMlNTsLHNpNVrDkP~lErfi~MNr 218 (395)
T KOG0930|consen 139 NLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNPNVKDKPTLERFIAMNR 218 (395)
T ss_pred hHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCcccccCceeeeeeehhhhhcccccCCCCCCCccHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhCccccCCCCC
Q 001069 821 GIDDGKDLPEEYLGVLYDQIVKNEIKMNADSS 852 (1166)
Q Consensus 821 g~~~g~d~~~~~L~~iY~~I~~~ei~~~~~~~ 852 (1166)
|||+|.|+|+|.|..+|++|+++++++|+|..
T Consensus 219 gineggdlpee~LrnlyeSi~~epFkIPeddg 250 (395)
T KOG0930|consen 219 GINEGGDLPEELLRNLYESIKNEPFKIPEDDG 250 (395)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCCCCCcccC
Confidence 99999999999999999999999999999864
No 9
>KOG0931 consensus Predicted guanine nucleotide exchange factor, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-51 Score=453.63 Aligned_cols=193 Identities=44% Similarity=0.810 Sum_probs=185.5
Q ss_pred HHHHHHHHHHhccCchhhHHHHHhcCCCCCCHHHHHHHhHcCCCCChhHHhhhcccc-chHHHHHHHHHHhcCCCCCCCh
Q 001069 664 KIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGER-EEFSLKVMHAYVDSFNFKGMDF 742 (1166)
Q Consensus 664 K~~l~~~~~~FN~~pk~gi~~L~~~~~i~~~p~~iA~fL~~~~~L~k~~iGeyLg~~-~~~~~~vl~~y~~~fdf~~~~i 742 (1166)
|+....|..+||.||.|||+||++.||++++|..+|+||.+..||+|+|||||||+. ++||.+||+++++.+||++|.+
T Consensus 198 kr~YriGlnlfn~kPekGvQ~Li~rGFv~dtPvgvAhfllqRkGLSrqMIGEflGn~~kqfnrdVLdcvvdemDfssmel 277 (627)
T KOG0931|consen 198 KRHYRIGLNLFNKKPEKGVQYLIERGFVPDTPVGVAHFLLQRKGLSRQMIGEFLGNRQKQFNRDVLDCVVDEMDFSSMEL 277 (627)
T ss_pred HHHhhhccchhcCCcchhhhhhhhhcccCCCchHHHHHHHhhccchHHHHHHHhccccchhhhHHHHHHHhhhccccchH
Confidence 555666999999999999999999999999999999999999999999999999985 7899999999999999999999
Q ss_pred HHHHHHHHccCcCCCchHHHHHHHHHHHHHhhhcCCCC---CCCchhHHHHHHHHhhhhhcccccccc--CCCCHHHHHH
Q 001069 743 GHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSS---FTSADTAYVLAYSVIMLNTDAHNSMVK--DKMTKADFIR 817 (1166)
Q Consensus 743 ~~ALR~fl~~frLPgE~Q~Idri~e~Fa~~y~~~Np~~---f~~~d~~y~LaysiimLnTDlHn~~vk--~kmt~~~Fi~ 817 (1166)
|+|||+|...||+|||+|+||||+|+||.|||.|||.+ |.|.|++|+|||||||||||+|+|||| +||+++||||
T Consensus 278 DeALRKfqahirvqgEAqKveRlIeAFsqrYc~cNP~~v~qfrnpDTIfiLaFAIIlLNTDmySPnVKperkM~leDFik 357 (627)
T KOG0931|consen 278 DEALRKFQAHIRVQGEAQKVERLIEAFSQRYCKCNPKVVRQFRNPDTIFILAFAIILLNTDMYSPNVKPERKMKLEDFIK 357 (627)
T ss_pred HHHHHHHHHHeecccHHHHHHHHHHHHHHHHhccCHHHHhhccCCCeehHHHHHHHHhcccccCCCCCHHHhhhHHHHHH
Confidence 99999999999999999999999999999999999984 999999999999999999999999999 8999999999
Q ss_pred hhccCCCCCCCCHHHHHHHHHHHhhCccccCCCCCCchh
Q 001069 818 NNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAPES 856 (1166)
Q Consensus 818 n~rg~~~g~d~~~~~L~~iY~~I~~~ei~~~~~~~~~~~ 856 (1166)
|+||+++|.|+|.++|.+||++|+++|++..+||....+
T Consensus 358 NLRGvDnGeDIpRell~GIYeRIqk~ELktndDHVsqVq 396 (627)
T KOG0931|consen 358 NLRGVDNGEDIPRELLVGIYERIQKRELKTNDDHVSQVQ 396 (627)
T ss_pred hccCCCCcccCcHHHHHHHHHHHHHhhcccCcchHHHHH
Confidence 999999999999999999999999999999999975443
No 10
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=100.00 E-value=9.3e-34 Score=295.57 Aligned_cols=162 Identities=41% Similarity=0.675 Sum_probs=148.9
Q ss_pred chhhhhHHHHHHHHHhcccCCCCCCCCcc--hhhhhhhHHHHHHHHHHHHcCCcccc---CcHHHHHHHHHHHHHHHHHh
Q 001069 393 SKIREDGFLLFKNICKLSMKFSSQENPDD--LILLRGKILSLELLKVVTDNGGPVWL---SNARFLIAIKQFLCLSLLKN 467 (1166)
Q Consensus 393 ~~~~~Da~lvF~~LC~Ls~~~~~~~~~~d--~~~lrsk~l~LeLi~~iLe~~~~~f~---~~~~l~~lik~~Lc~~Llrn 467 (1166)
+++.+||++||++||+|+++..+.+...+ .+..++|++|||||+++|+++|+.|. .||.|++++|+++|++|+++
T Consensus 2 ~~~~~Da~~vf~~Lc~L~~~~~~~~~~~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~ 81 (168)
T PF12783_consen 2 NYYVKDAFLVFRDLCSLSSKPSDPGNSPDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKN 81 (168)
T ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999987766542222 14667899999999999999999999 66699999999999999999
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhcChhHHHHHhHhcCC
Q 001069 468 SALSVMAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVFVNYDC 547 (1166)
Q Consensus 468 ~~s~~~~vf~~slrif~~L~~~~r~~LK~EiEvfl~~lil~iLe~~~~~~~~qk~l~LE~l~~l~~~p~~l~ely~NYDC 547 (1166)
+.++.+++|.+++|||++|+.+||.+||.|+|+||+.+++++++++ ++++|||+++||+++++|++|++++|+|+||||
T Consensus 82 ~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~-~~~~~~k~~~Le~l~~l~~~p~~l~~lf~NYDC 160 (168)
T PF12783_consen 82 LSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESD-NSSLWQKELALEILRELCKDPQFLVDLFVNYDC 160 (168)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHHHHhChhHHHHHHHHcCC
Confidence 9998999999999999999999999999999999999999999988 457899999999999999999999999999999
Q ss_pred CCCCccHH
Q 001069 548 DVDSPNIF 555 (1166)
Q Consensus 548 d~~~~nIf 555 (1166)
|.+++|||
T Consensus 161 d~~~~nif 168 (168)
T PF12783_consen 161 DLNSKNIF 168 (168)
T ss_pred CCCCCCCC
Confidence 99999986
No 11
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.6e-31 Score=300.14 Aligned_cols=164 Identities=35% Similarity=0.645 Sum_probs=154.4
Q ss_pred hcCCCCC--CHHHHHHHhHcCCCCChhHHhhhccccchHHHHHHHHHHhcCCCCCCChHHHHHHHHccCcCCCchHHHHH
Q 001069 687 NSKKVGD--SPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDR 764 (1166)
Q Consensus 687 ~~~~i~~--~p~~iA~fL~~~~~L~k~~iGeyLg~~~~~~~~vl~~y~~~fdf~~~~i~~ALR~fl~~frLPgE~Q~Idr 764 (1166)
.+|..++ -...+|+-|++..+.-|..++.+||++++|+.-|..+|++.|+|.|++||.|||.||..|-|-||.|.-+|
T Consensus 297 sng~~~~~eaA~rlArrLY~L~gf~~sdVA~~LgknNeFS~lVa~eYL~fF~Fsg~tlD~ALR~Flka~~L~GETqeRER 376 (774)
T KOG0932|consen 297 SNGSVGNEEAAARLARRLYRLEGFRKSDVARHLGKNNEFSRLVAEEYLSFFQFSGMTLDQALREFLKALELMGETQERER 376 (774)
T ss_pred cccccccHHHHHHHHHHHHHhhCccHHHHHHHhcccchHHHHHHHHHHHHhhccCccHHHHHHHHHHHhhhccchHHHHH
Confidence 3444433 34578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCchhHHHHHHHHhhhhhccccccccCCCCHHHHHHhhccCCCCCCCCHHHHHHHHHHHhhCc
Q 001069 765 IMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNE 844 (1166)
Q Consensus 765 i~e~Fa~~y~~~Np~~f~~~d~~y~LaysiimLnTDlHn~~vk~kmt~~~Fi~n~rg~~~g~d~~~~~L~~iY~~I~~~e 844 (1166)
|+..|+.|||+|||++|.+.|.|++|..|||+||||||.+||.+|||.+|||.|+.|+|+|.|||.|+|..+|++|+++.
T Consensus 377 vL~hFS~Ry~~CNP~~~~S~DgvHtLTCAlmLLNTDLHGhniGKkMtcqdFI~Nl~glndG~dF~kelLKaLy~SIKnek 456 (774)
T KOG0932|consen 377 VLRHFSRRYFQCNPDIFDSEDGVHTLTCALMLLNTDLHGHNIGKKMTCQDFITNLAGLNDGGDFPKELLKALYNSIKNEK 456 (774)
T ss_pred HHHHHHHHhhccCccccccccchhHHHHHHHHHccccccccccccccHHHHHHHHhcccccCccHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCCC
Q 001069 845 IKMNAD 850 (1166)
Q Consensus 845 i~~~~~ 850 (1166)
+.+.-|
T Consensus 457 lewAid 462 (774)
T KOG0932|consen 457 LEWAID 462 (774)
T ss_pred hhhccC
Confidence 776543
No 12
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=2.9e-29 Score=307.80 Aligned_cols=369 Identities=18% Similarity=0.146 Sum_probs=271.6
Q ss_pred CCCcccccchhHHHHHHHhhhhhccchhHHHHHHHHHHHhhcCCCCCCCcccccccCCccCchhcHHHHHHhhcCCCcch
Q 001069 8 GGPSRCGRAVGPSLDKIIKNAAWRKHAHLVSSCKSVLDKLDSISDDPSQVSSSLFGLSQNDAGLVLHPIFLALDSAYPKV 87 (1166)
Q Consensus 8 ~~~~~~~~~l~~~L~~i~~e~~~rK~~~Lr~A~e~al~~lk~~~~~~~~~~~~~~~~~~~~~~~i~~Pf~lAC~tk~~kl 87 (1166)
|+--.+...|...|+.|.+| .+|||+++|+|+++++..|++....+.+- -.+ . ...+.++.||.+||.+|+.|+
T Consensus 6 ~~~~sl~~aL~adLrsLsse-ArkKnn~VK~aAdkSi~~Lr~isS~s~ds-~vl---e-t~~edf~~PfllaC~sr~tRl 79 (1610)
T KOG1848|consen 6 PNIMSLVRALLADLRSLSSE-ARKKNNEVKLAADKSIQELRQISSASRDS-DVL---E-TPNEDFLVPFLLACISRNTRL 79 (1610)
T ss_pred ccHHHHHHHHHHHHHHhhHH-HHhhchHHHHHHHhHHHHHHhhccccccc-ccc---c-cCCcccccceeeecccCcccc
Confidence 44445677888999999999 58999999999999999999998753110 011 1 114569999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCcccchHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHhhcCCcc
Q 001069 88 VEPALECAFKLFSLGLARGEIEGESDNTNTTSTTNTNQKNFNIIYKLIEAICKVCGIGEEPIELSVLRVLLSAVRSPCLL 167 (1166)
Q Consensus 88 ~~~aLdclqKLIs~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lid~iie~Ic~c~~~~de~VqLqILk~Llt~v~s~~~~ 167 (1166)
+.+||.|||||+.|..++++. ...+++.-+++... .+.+||++||+.|.++++|-..
T Consensus 80 ~~ials~iQkL~~~dsleps~------------------~aeildn~L~a~~q-----ae~~QLrvLQtiPii~~syl~f 136 (1610)
T KOG1848|consen 80 FVIALSCIQKLGRHDSLEPSV------------------TAEILDNNLWAAAQ-----AEWIQLRVLQTIPIIFFSYLTF 136 (1610)
T ss_pred eeeHHHHHHHHhccCCCCCcc------------------cHHHHHHHHHHHHH-----HHHHHHhhhccccceeeeceee
Confidence 999999999999999998752 23455666666443 3889999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHhhhccccCCCCcccchhhhhhhhhcccCCCCCcccccc
Q 001069 168 IRGDCLLLIVRTCYNVYLGGSSGTNQICAKSVLAQIMVIVFTRVEEDSMNVPHFKTISVSELLEFADKSLNEGSSIHFCQ 247 (1166)
Q Consensus 168 vHg~~Ll~avrtCynI~l~Sk~~~nq~tA~ATLtQmi~~VF~Rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 247 (1166)
+.|..|++++++|||++ .+|++++-|||.|||+|+|..||+||..++...+ . . -+
T Consensus 137 i~~p~l~kll~iCfnLl-~~knkvV~NaAaAtlrQlV~~vFdrv~ies~~~d---------------~-------~--l~ 191 (1610)
T KOG1848|consen 137 ITGPPLLKLLIICFNLL-YQKNKVVFNAAAATLRQLVLLVFDRVPIESDAFD---------------F-------I--LP 191 (1610)
T ss_pred ccCcHHHHHHHHHHHHH-cCCCcceechhHHHHHHHHHHHHHhccccccccc---------------c-------c--ch
Confidence 99999999999999988 6899999999999999999999999986531000 0 0 00
Q ss_pred ccccccccCCCCCCchhhhhhhhcccCCCCCCCCCccccccccchhcccccCCccccccCCCCCCCCCCCCCCCCCCCCC
Q 001069 248 NFINEVMGASEGVFEPAMLQLKQNVSTKLPNGDTEVATEDEKGEVVKEGEKGEGEVAKEGENGGGRVPKEGETGEGQVPK 327 (1166)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (1166)
.+ .+ .+|..-+
T Consensus 192 sl-------~~--------------------------------------------------~s~t~sl------------ 202 (1610)
T KOG1848|consen 192 SL-------TE--------------------------------------------------ASGTSSL------------ 202 (1610)
T ss_pred hh-------hc--------------------------------------------------cCCccch------------
Confidence 00 00 0000000
Q ss_pred CCCcCCCcccccCccCCCCCCCCCCcCCCcccccCccCccccccccCCCCCCCCCCCCCCCCCCcchhhhhHHHHHHHHH
Q 001069 328 EGEKGGGQALKEGEKGEGQAPKEGKEGEGQVLKDDEKGEDRVVKEGEKGEGGEGQGNGGAELGGESKIREDGFLLFKNIC 407 (1166)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Da~lvF~~LC 407 (1166)
. ......+++.+|++..|.++|
T Consensus 203 ----------------------------------------------~------------aa~~~~~~l~~dI~~~~~~i~ 224 (1610)
T KOG1848|consen 203 ----------------------------------------------E------------AALTALDPLQKDICVGFENIQ 224 (1610)
T ss_pred ----------------------------------------------h------------hcccccchHHHhHhcchHHHH
Confidence 0 000012788999999999999
Q ss_pred hcccCCCCCCCCcchhhhhhhHHHHHHHHHHHHcCCccccCcHHHH--HHHHHHHHHHHHHhcccCchhHHHHHHHHHHH
Q 001069 408 KLSMKFSSQENPDDLILLRGKILSLELLKVVTDNGGPVWLSNARFL--IAIKQFLCLSLLKNSALSVMAVFQLQCSIFMS 485 (1166)
Q Consensus 408 ~Ls~~~~~~~~~~d~~~lrsk~l~LeLi~~iLe~~~~~f~~~~~l~--~lik~~Lc~~Llrn~~s~~~~vf~~slrif~~ 485 (1166)
.+.....+. +..+.... ++..|+|++++++.+....+..+..|. ++++..+||.+.|... ++++++..
T Consensus 225 l~~~~~~~~-~L~~Iee~-~~s~~~elLesilks~~s~~dq~qdf~~a~ll~~~~~Py~~Rl~~--------~sv~~i~~ 294 (1610)
T KOG1848|consen 225 LMYPAIFDQ-LLAFIEES-TKSPGLELLESILKSNASKSDQIQDFAPAELLALNVVPYAERLLL--------RSVDLIQK 294 (1610)
T ss_pred HhcccccHh-HHhcchhc-cccchhhhhhhhhhcchhhhHHHHHhhHHHHHHhhhHHHHHHHHH--------HHHHHHHH
Confidence 986443322 22222233 689999999999999999999999999 9999999999998654 44444444
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHhc-------------------------------------------CCCCCchhHH
Q 001069 486 LL-SKYRSGLKAEIGIFFPMLVLRVLE-------------------------------------------NVLQPSFVQK 521 (1166)
Q Consensus 486 L~-~~~r~~LK~EiEvfl~~lil~iLe-------------------------------------------~~~~~~~~qk 521 (1166)
+. +..-...+.+.|++.+.+.+-++- ....++.|++
T Consensus 295 l~~~ea~~~~ev~lnvi~slisn~~ll~~~~~~s~~~~kdlv~~l~~~v~l~~~~i~v~~~v~la~~lk~~s~~~~~~p~ 374 (1610)
T KOG1848|consen 295 LACHEAVVNEEVLLNVIKSLISNTNLLFDPESLSYPCSKDLVWKLAVSVLLYVLSIGVPVAVFLASLLKFDSMDLELWPR 374 (1610)
T ss_pred HhccHHHHHHHHHHHHHHHHHHhcccccchhhccccccHHHHhHHhHHHheeecccCcchhhhHHHHhhhhhcCcccCcc
Confidence 44 233333444444444444311110 0012456999
Q ss_pred HHHHHHHHHHhcChhHHHHHhHhcCCCCCCccHHHHHHHHHHhhcc
Q 001069 522 MTVLNLLEKISQDSQIIVDVFVNYDCDVDSPNIFERIVNGLLKTAL 567 (1166)
Q Consensus 522 ~l~LE~l~~l~~~p~~l~ely~NYDCd~~~~nIfe~li~~Lsk~a~ 567 (1166)
.++++++++++.++..+..++.|+||++.+.++++..+..++.+++
T Consensus 375 ~l~~~~~~siv~k~dsi~~~trn~diktk~thlldk~~~plan~vy 420 (1610)
T KOG1848|consen 375 FLDFLFLKSIVPKNDSIQIFTRNFDIKTKVTHLLDKEILPLANFVY 420 (1610)
T ss_pred HhHHHhhccCCCCchhhHHHHhhcccCcchHHHHhhcccccchhHH
Confidence 9999999999999999999999999999999999988877766654
No 13
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.10 E-value=0.077 Score=69.18 Aligned_cols=186 Identities=16% Similarity=0.199 Sum_probs=134.9
Q ss_pred cCchhhHHHHHHhhHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhhccCCC--------
Q 001069 914 TDPGILRFMVEVCWGPMLAAFSVTLDQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHC-------- 985 (1166)
Q Consensus 914 ~~~~~~r~Mfe~~W~pilaaLS~~f~~s~d~~~i~~~L~G~~~~i~Ia~~f~l~~~rDafi~sL~kfT~L~~-------- 985 (1166)
...+.++.|....|..++.+++..+-++.|+.+..+.+.+....+..||+.+-++...+++..||+|+....
T Consensus 520 ~kLe~i~~a~~snq~tildalks~l~~st~e~is~qvl~s~stltsa~~~~~Ade~lna~~~~l~~~~~~s~r~vs~lr~ 599 (1610)
T KOG1848|consen 520 TKLEIIFDAVLSNQSTILDALKSTLPESTDEIISAQVLASYSTLTSACGRCSADEVLNALKEALVPFKDFSPRPVSRLRC 599 (1610)
T ss_pred eeehhHHHHHhhccccHHHHhhhhccccccchhhHHHHhchHHHHhccccccchhHHHHHHHhhCCcccCCccHHHHHhh
Confidence 345667888999999999999999999999999999999999999999999999999999999999985421
Q ss_pred -----c-------c---------------------------------cchhhhHHHHHHHHHHHhhcCCcchhcHHHHHH
Q 001069 986 -----A-------A---------------------------------DMKQKNVDAVKAIISIAIEDGNHLQEAWEHILT 1020 (1166)
Q Consensus 986 -----~-------~---------------------------------~~~~Knv~aik~Ll~Ia~~~Gn~L~~sW~~IL~ 1020 (1166)
| . -.+.||++|+|+.+.+++++-+.++.+|..++.
T Consensus 600 l~s~Spv~gr~~~sew~~dfetw~~~t~~~~~~p~~~~~s~ss~~~v~lT~snvqa~rsf~t~~~~~~~sy~~sw~llm~ 679 (1610)
T KOG1848|consen 600 LNSESPVVGRKMGSEWKIDFETWDKATIILNRSPTSKHLSTSSLNRVNLTNSNVQASRSFSTLMDYELVSYKNSWSLLMY 679 (1610)
T ss_pred ccccCccccccCCcceEEEEeeccceeeEecCCCCCccccccCCCccccccchHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 0 0 024699999999999999999999999999998
Q ss_pred HHHHHHHHHHhcCCCCCCcccccccccchhhhhhccCCCCCccccCCCCCcchhhhhcCCcccccccCCCCCCCCCHHHH
Q 001069 1021 CLSRIEHLQLLGEGAPTDASFLTVSNVEADEKTQKSMGFPSLKKKGTLQNPSVMAVVRGGSYDSTTVGVNSPGLVTPEQI 1100 (1166)
Q Consensus 1021 ~Is~Le~lqll~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~sy~s~~~~~~~~~~~t~eei 1100 (1166)
+.+.|++.--.. +....++- . .. .+.++.+|+.+-.
T Consensus 680 t~~~ls~~~~m~---p~qt~l~v-----~-------t~-----------------------------~~~hp~~p~~~~~ 715 (1610)
T KOG1848|consen 680 TTSSLSQPAYME---PLQTLLAV-----I-------TS-----------------------------SSVHPIQPLTAPR 715 (1610)
T ss_pred HHHHhcchhhcC---HHHhhHHH-----H-------hc-----------------------------CCCCCCCcchhhH
Confidence 877776531110 00000000 0 00 0112233322211
Q ss_pred HhhhhhhhHHhhhcccchhHHHHhccCCCHHHHHHHHHHHHHhhHhhh
Q 001069 1101 NHFIANLNLLDQIGNFELNHVFAHSQRLNSEAIVAFVKALCKVSISEL 1148 (1166)
Q Consensus 1101 ~~~~~~~~vi~~i~s~~id~IF~~S~~L~~eaIv~FVkALc~vS~eEi 1148 (1166)
.. ....-++..+ -+.+|.++++++..+....++||.+++.+-+
T Consensus 716 ~~-ynd~~~lssl----~~~v~~~~a~~~~ss~~slL~ali~ls~~sl 758 (1610)
T KOG1848|consen 716 QS-YNDDLLLSSL----KNSVYKTSANRSISSGISLLRALIELSYSSL 758 (1610)
T ss_pred HH-HHHHHHHHHH----HHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 11 1111122222 2789999999999999999999999988766
No 14
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=85.82 E-value=13 Score=40.43 Aligned_cols=106 Identities=14% Similarity=0.175 Sum_probs=70.4
Q ss_pred hhhhHHHHHHHHHHHHcCCccccCcHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001069 425 LRGKILSLELLKVVTDNGGPVWLSNARFLIAIKQFLCLSLLKNSALSVMAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPM 504 (1166)
Q Consensus 425 lrsk~l~LeLi~~iLe~~~~~f~~~~~l~~lik~~Lc~~Llrn~~s~~~~vf~~slrif~~L~~~~r~~LK~EiEvfl~~ 504 (1166)
...|.=+|+-|..++..+ ..-...+.+...+| .+...+.+.+.+....+...+|.++..|+..++.++...++.+++.
T Consensus 21 W~~r~~al~~L~~l~~~~-~~~~~~~~~~~~l~-~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~ 98 (228)
T PF12348_consen 21 WEERVEALQKLRSLIKGN-APEDFPPDFVECLR-QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPP 98 (228)
T ss_dssp HHHHHHHHHHHHHHHHH--B-----HHHHHHHH----HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-CccccHHHHHHHHH-HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 445788999999999988 22234467888888 5667777777776778999999999999999999999999999998
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHHhcChh
Q 001069 505 LVLRVLENVLQPSFVQKMTVLNLLEKISQDSQ 536 (1166)
Q Consensus 505 lil~iLe~~~~~~~~qk~l~LE~l~~l~~~p~ 536 (1166)
|+.++-+ . .-.-+..+.++|..++..-.
T Consensus 99 Ll~~~~~-~---~~~i~~~a~~~L~~i~~~~~ 126 (228)
T PF12348_consen 99 LLKKLGD-S---KKFIREAANNALDAIIESCS 126 (228)
T ss_dssp HHHGGG-------HHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHcc-c---cHHHHHHHHHHHHHHHHHCC
Confidence 8644433 2 12345567777777776444
No 15
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=68.74 E-value=3.5 Score=38.64 Aligned_cols=28 Identities=21% Similarity=0.570 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhcCCcchhcHHHHHHHHH
Q 001069 996 AVKAIISIAIEDGNHLQEAWEHILTCLS 1023 (1166)
Q Consensus 996 aik~Ll~Ia~~~Gn~L~~sW~~IL~~Is 1023 (1166)
.+.++..+.+.+|+.++.||+.|+.++.
T Consensus 38 il~ci~qil~~~~~~i~SGW~~if~il~ 65 (86)
T PF09324_consen 38 ILECILQILQSRGENIKSGWKVIFSILR 65 (86)
T ss_pred HHHHHHHHHHHhHHHHHhccHHHHHHHH
Confidence 4678888999999999999999999863
No 16
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=47.81 E-value=14 Score=39.52 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=33.5
Q ss_pred hhcHHHHHHhhcCCCcchHHHHHHHHHHHHhcCCCCCC
Q 001069 70 GLVLHPIFLALDSAYPKVVEPALECAFKLFSLGLARGE 107 (1166)
Q Consensus 70 ~~i~~Pf~lAC~tk~~kl~~~aLdclqKLIs~~~l~~~ 107 (1166)
.+++.|++-|..|+++.++..+|.|||+|+..+-.-|+
T Consensus 79 PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 79 PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 46999999999999999999999999999777665554
No 17
>PTZ00429 beta-adaptin; Provisional
Probab=40.04 E-value=1e+03 Score=31.40 Aligned_cols=123 Identities=20% Similarity=0.296 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHcCCccccCcHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001069 430 LSLELLKVVTDNGGPVWLSNARFLIAIKQFLCLSLLKNSALSVMAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPMLVLRV 509 (1166)
Q Consensus 430 l~LeLi~~iLe~~~~~f~~~~~l~~lik~~Lc~~Llrn~~s~~~~vf~~slrif~~L~~~~r~~LK~EiEvfl~~lil~i 509 (1166)
..|+-+..++.-.... .+.++..+=.++-+.|+... +..+.+=-+++|-+..|+..+...+..++.+||-..
T Consensus 272 VVl~Aik~il~l~~~~---~~~~~~~~~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~---- 343 (746)
T PTZ00429 272 VVMGAIKVVANLASRC---SQELIERCTVRVNTALLTLS-RRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRY---- 343 (746)
T ss_pred HHHHHHHHHHHhcCcC---CHHHHHHHHHHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhccc----
Confidence 3345555444332211 24444433334445555443 334444446677777777777777776666665332
Q ss_pred hcCCCCCchhHHHHHHHHHHHHhcCh---hHHHHHhHhcCCCCCCccHHHHHHHHHHhhcc
Q 001069 510 LENVLQPSFVQKMTVLNLLEKISQDS---QIIVDVFVNYDCDVDSPNIFERIVNGLLKTAL 567 (1166)
Q Consensus 510 Le~~~~~~~~qk~l~LE~l~~l~~~p---~~l~ely~NYDCd~~~~nIfe~li~~Lsk~a~ 567 (1166)
+ .|.+ -|...||+|..++..- .++.||.. |=.+.+ ..+-.+.|..+.++|.
T Consensus 344 --~--Dp~y-IK~~KLeIL~~Lane~Nv~~IL~EL~e-Ya~d~D-~ef~r~aIrAIg~lA~ 397 (746)
T PTZ00429 344 --S--DPPF-VKLEKLRLLLKLVTPSVAPEILKELAE-YASGVD-MVFVVEVVRAIASLAI 397 (746)
T ss_pred --C--CcHH-HHHHHHHHHHHHcCcccHHHHHHHHHH-HhhcCC-HHHHHHHHHHHHHHHH
Confidence 2 2445 4888999999998653 33334332 211211 2345555555555553
No 18
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=40.03 E-value=1.7e+02 Score=31.77 Aligned_cols=105 Identities=13% Similarity=0.145 Sum_probs=62.7
Q ss_pred cchhHHHHHHHhhhhhccchhHHHHHHHHHHHhhcCCCCCCCcccccccCCccCchhcHHHHHHhhcCCCcchHHHHHHH
Q 001069 15 RAVGPSLDKIIKNAAWRKHAHLVSSCKSVLDKLDSISDDPSQVSSSLFGLSQNDAGLVLHPIFLALDSAYPKVVEPALEC 94 (1166)
Q Consensus 15 ~~l~~~L~~i~~e~~~rK~~~Lr~A~e~al~~lk~~~~~~~~~~~~~~~~~~~~~~~i~~Pf~lAC~tk~~kl~~~aLdc 94 (1166)
.++..-+..|+.- .+.+.+-+++++..+|..+=..-+. .+..++..+..++..||+++-..++.|
T Consensus 90 ~~~~~~l~~Ll~~-~~~~~~~i~~~a~~~L~~i~~~~~~--------------~~~~~~~~l~~~~~~Kn~~vR~~~~~~ 154 (228)
T PF12348_consen 90 PYADILLPPLLKK-LGDSKKFIREAANNALDAIIESCSY--------------SPKILLEILSQGLKSKNPQVREECAEW 154 (228)
T ss_dssp HHHHHHHHHHHHG-GG---HHHHHHHHHHHHHHHTTS-H----------------HHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HccccHHHHHHHHHHHHHHHHHCCc--------------HHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3344444444443 3456778999999999988765431 123347888889999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCCCCCCCCCcccchHHHHHHHHHHhhcCCCCCcch
Q 001069 95 AFKLFSLGLARGEIEGESDNTNTTSTTNTNQKNFNIIYKLIEAICKVCGIGEEPIE 150 (1166)
Q Consensus 95 lqKLIs~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lid~iie~Ic~c~~~~de~Vq 150 (1166)
|..++...-.+.... .....++.++.+|+.|....+.+|-
T Consensus 155 l~~~l~~~~~~~~~l----------------~~~~~~~~l~~~l~~~l~D~~~~VR 194 (228)
T PF12348_consen 155 LAIILEKWGSDSSVL----------------QKSAFLKQLVKALVKLLSDADPEVR 194 (228)
T ss_dssp HHHHHTT-----GGG------------------HHHHHHHHHHHHHHHTSS-HHHH
T ss_pred HHHHHHHccchHhhh----------------cccchHHHHHHHHHHHCCCCCHHHH
Confidence 999886643111110 1223467888888888655566565
No 19
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=39.49 E-value=2.8e+02 Score=28.44 Aligned_cols=63 Identities=10% Similarity=0.191 Sum_probs=45.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhc
Q 001069 471 SVMAVFQLQCSIFMSLLSKYRSGLKAEIG--IFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQ 533 (1166)
Q Consensus 471 ~~~~vf~~slrif~~L~~~~r~~LK~EiE--vfl~~lil~iLe~~~~~~~~qk~l~LE~l~~l~~ 533 (1166)
.++.+..++|.++-.++.+...++..|+. -|+..++.+++....+++..-|.-+|+++..+..
T Consensus 51 ~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 51 KNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 46777778888888999888888877774 6888733477764434444556678888887763
No 20
>COG5307 SEC7 domain proteins [General function prediction only]
Probab=32.18 E-value=28 Score=46.50 Aligned_cols=52 Identities=17% Similarity=0.346 Sum_probs=46.2
Q ss_pred chhHHHHHHHHHHHHh-cChhHHHHHhHhcCCCCCCccHHHHHHHHHHhhccC
Q 001069 517 SFVQKMTVLNLLEKIS-QDSQIIVDVFVNYDCDVDSPNIFERIVNGLLKTALG 568 (1166)
Q Consensus 517 ~~~qk~l~LE~l~~l~-~~p~~l~ely~NYDCd~~~~nIfe~li~~Lsk~a~~ 568 (1166)
|...+.+..|.+.-++ +.|.+..+.|.+|||+....+..-.+++.|.+.+..
T Consensus 161 p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~is~l~~l~~~sl~ 213 (1024)
T COG5307 161 PPETRSLIIEQLSILWISSPYFFLTLISDFQCDLDSSDCSISFLKGLTKNSLV 213 (1024)
T ss_pred CCcchhhhhhhhhhcCCCCCccccccccchhhhhHHHHHHHHHHHHHhhcccc
Confidence 4467888999999888 899999999999999999999999999999987754
No 21
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=32.00 E-value=7.3e+02 Score=28.43 Aligned_cols=159 Identities=17% Similarity=0.146 Sum_probs=90.9
Q ss_pred chhHHHHHHHhhhhhccchhHHHHHHHHHHHhhcCCCCCCCcccccccCCccCchhcHHHHHHhhcCCCcchHHHHHHHH
Q 001069 16 AVGPSLDKIIKNAAWRKHAHLVSSCKSVLDKLDSISDDPSQVSSSLFGLSQNDAGLVLHPIFLALDSAYPKVVEPALECA 95 (1166)
Q Consensus 16 ~l~~~L~~i~~e~~~rK~~~Lr~A~e~al~~lk~~~~~~~~~~~~~~~~~~~~~~~i~~Pf~lAC~tk~~kl~~~aLdcl 95 (1166)
.|..-+++|+--.-...++++|+.+=+.|...--... .-+..+|.-|.-+.+.....+..+||.+|
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~--------------~~a~~~l~l~~~~~~~~~~~v~~~al~~l 88 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK--------------ELAKEHLPLFLQALQKDDEEVKITALKAL 88 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh--------------HHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445667777553334678899888777766655443 23566888888888888999999999999
Q ss_pred HHHH-hcCCCCCCCCCCCCCCCCCCCCCCCcccchHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHhhcCCcccch-HHH
Q 001069 96 FKLF-SLGLARGEIEGESDNTNTTSTTNTNQKNFNIIYKLIEAICKVCGIGEEPIELSVLRVLLSAVRSPCLLIRG-DCL 173 (1166)
Q Consensus 96 qKLI-s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lid~iie~Ic~c~~~~de~VqLqILk~Llt~v~s~~~~vHg-~~L 173 (1166)
--|+ .||.-.-.....+ ..+.+...+++-+...+ +..+.++|......+--++.+.. ++. ..+
T Consensus 89 ~Dll~~~g~~~~~~~~~~---------~~~~~~~~l~~~l~~~l----~~~~~~~~~~a~EGl~KLlL~~~--i~~~~~v 153 (298)
T PF12719_consen 89 FDLLLTHGIDIFDSESDN---------DESVDSKSLLKILTKFL----DSENPELQAIAVEGLCKLLLSGR--ISDPPKV 153 (298)
T ss_pred HHHHHHcCchhccchhcc---------CccchHhHHHHHHHHHH----hcCCHHHHHHHHHHHHHHHhcCC--CCcHHHH
Confidence 6665 4443221111100 00112233444433333 22355677777777777777664 455 333
Q ss_pred -HHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHhhh
Q 001069 174 -LLIVRTCYNVYLGGSSGTNQICAKSVLAQIMVIVFTRVE 212 (1166)
Q Consensus 174 -l~avrtCynI~l~Sk~~~nq~tA~ATLtQmi~~VF~Rv~ 212 (1166)
.+.|..-||- .+..|+ -|+|++++-|..--
T Consensus 154 L~~Lll~yF~p----~t~~~~-----~LrQ~L~~Ffp~y~ 184 (298)
T PF12719_consen 154 LSRLLLLYFNP----STEDNQ-----RLRQCLSVFFPVYA 184 (298)
T ss_pred HHHHHHHHcCc----ccCCcH-----HHHHHHHHHHHHHH
Confidence 3344433321 112222 57888887776554
No 22
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=30.88 E-value=4.1e+02 Score=27.44 Aligned_cols=67 Identities=9% Similarity=0.070 Sum_probs=44.3
Q ss_pred HHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHh
Q 001069 463 SLLKNSALSVMAVFQLQCSIFMSLLSKYRSGLKAEI--GIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKIS 532 (1166)
Q Consensus 463 ~Llrn~~s~~~~vf~~slrif~~L~~~~r~~LK~Ei--Evfl~~lil~iLe~~~~~~~~qk~l~LE~l~~l~ 532 (1166)
+|-+-+.+.++.+--++|.++-.++.+...++..|+ .-|+..+. +++... .+..-|.-+|+++..+.
T Consensus 41 al~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~-kl~~~~--~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 41 AIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELK-KLINDR--VHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHH-HHhccc--CCHHHHHHHHHHHHHHH
Confidence 333333455677777788888888888777777666 46888875 666553 23344556777777664
No 23
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=29.38 E-value=1.6e+02 Score=31.49 Aligned_cols=91 Identities=15% Similarity=0.053 Sum_probs=65.5
Q ss_pred chhcHHHHHHhhcCCCcchHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCcccchHHHHHHHHHHhhcCCCCCc
Q 001069 69 AGLVLHPIFLALDSAYPKVVEPALECAFKLFSLGLARGEIEGESDNTNTTSTTNTNQKNFNIIYKLIEAICKVCGIGEEP 148 (1166)
Q Consensus 69 ~~~i~~Pf~lAC~tk~~kl~~~aLdclqKLIs~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lid~iie~Ic~c~~~~de~ 148 (1166)
...|+..+.-.|-+.+.++-..|++.|+-.+..|++.+.. -+..+|- .....+..
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~---------------------cvp~lIA----L~ts~~~~ 60 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQ---------------------CVPTLIA----LETSPNPS 60 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHH---------------------HHhHhhh----hhCCCChH
Confidence 3568888899999999999999999999999999997652 1222332 22334566
Q ss_pred chhHHHHHHHHHhhcCCcccchHHHHHHHHHHHHhhc
Q 001069 149 IELSVLRVLLSAVRSPCLLIRGDCLLLIVRTCYNVYL 185 (1166)
Q Consensus 149 VqLqILk~Llt~v~s~~~~vHg~~Ll~avrtCynI~l 185 (1166)
|.=+..+.|-.+...+...|+. .+.+.||.+|+.+.
T Consensus 61 ir~~A~~~l~~l~eK~~s~v~~-~~~~gi~~af~~~~ 96 (187)
T PF12830_consen 61 IRSRAYQLLKELHEKHESLVES-RYSEGIRLAFDYQR 96 (187)
T ss_pred HHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHH
Confidence 6656666666666666656666 57778999998553
No 24
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=28.24 E-value=6.6e+02 Score=25.79 Aligned_cols=70 Identities=11% Similarity=0.087 Sum_probs=45.2
Q ss_pred HHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCC---CCCchhHHHHHHHHHHHHh
Q 001069 462 LSLLKNSALSVMAVFQLQCSIFMSLLSKYRSGLKAEI--GIFFPMLVLRVLENV---LQPSFVQKMTVLNLLEKIS 532 (1166)
Q Consensus 462 ~~Llrn~~s~~~~vf~~slrif~~L~~~~r~~LK~Ei--Evfl~~lil~iLe~~---~~~~~~qk~l~LE~l~~l~ 532 (1166)
.+|.+-+.+.++.+--++|.++-.++.+....+..|+ .-|+..++ +++... ..++..-|.-+|+++..+.
T Consensus 41 rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~-kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 41 RLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELI-KLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHH-HHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3444444566777777888888888888777776666 46888875 666431 1233344555777777655
No 25
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=27.47 E-value=3.8e+02 Score=32.12 Aligned_cols=123 Identities=17% Similarity=0.141 Sum_probs=73.5
Q ss_pred cccCcHHHHHHHHHHHH-HHHHHhcccCchhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCCchhH
Q 001069 445 VWLSNARFLIAIKQFLC-LSLLKNSALSVMAVFQLQCSIFMSLLS---KYRSGLKAEIGIFFPMLVLRVLENVLQPSFVQ 520 (1166)
Q Consensus 445 ~f~~~~~l~~lik~~Lc-~~Llrn~~s~~~~vf~~slrif~~L~~---~~r~~LK~EiEvfl~~lil~iLe~~~~~~~~q 520 (1166)
+|.+||.+.+-+.-..+ ..+...+.+++..+-..++|++..++. .++..++..+.+|+ -+-|+.. +.....
T Consensus 10 l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~i----i~SL~~~-~~~~~E 84 (371)
T PF14664_consen 10 LLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFI----IRSLDRD-NKNDVE 84 (371)
T ss_pred HHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhh----Hhhhccc-CCChHH
Confidence 45566655553333322 333334555667788888999988873 45555566666554 2445444 334467
Q ss_pred HHHHHHHHHHHhcChhHHHHHhHhcCCCCCCccHHHHHHHHHHhhccCCCCCCCCCCCchhhHHhhhhhHHHHHHHH
Q 001069 521 KMTVLNLLEKISQDSQIIVDVFVNYDCDVDSPNIFERIVNGLLKTALGPPPGSTTSLSPAQDIAFRYESVKCLVSII 597 (1166)
Q Consensus 521 k~l~LE~l~~l~~~p~~l~ely~NYDCd~~~~nIfe~li~~Lsk~a~~~~~~~~~~~~~~q~~~l~~~aL~~L~~il 597 (1166)
|+-+|..++.+..-++- ...+=..++.+|..+|.. ++-.+|..|++.|+.+.
T Consensus 85 R~QALkliR~~l~~~~~-------------~~~~~~~vvralvaiae~------------~~D~lr~~cletL~El~ 136 (371)
T PF14664_consen 85 REQALKLIRAFLEIKKG-------------PKEIPRGVVRALVAIAEH------------EDDRLRRICLETLCELA 136 (371)
T ss_pred HHHHHHHHHHHHHhcCC-------------cccCCHHHHHHHHHHHhC------------CchHHHHHHHHHHHHHH
Confidence 88899888888754221 223345566666666653 13358889999887764
No 26
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=26.89 E-value=1.1e+02 Score=35.60 Aligned_cols=46 Identities=24% Similarity=0.245 Sum_probs=30.7
Q ss_pred hhhhhhHHHHHHHHHHHHcCC-------ccccCcHHHHHHHHHHHHHHHHHhcc
Q 001069 423 ILLRGKILSLELLKVVTDNGG-------PVWLSNARFLIAIKQFLCLSLLKNSA 469 (1166)
Q Consensus 423 ~~lrsk~l~LeLi~~iLe~~~-------~~f~~~~~l~~lik~~Lc~~Llrn~~ 469 (1166)
+.++.|+--++-=..++-||+ +.|.-.|..+++|+. .||+|+|.+.
T Consensus 207 ~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt-~cPhllRYLa 259 (432)
T KOG2758|consen 207 QQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQT-SCPHLLRYLA 259 (432)
T ss_pred HHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHh-hCHHHHHHHH
Confidence 345555555554455555654 356777888888864 6999999876
No 27
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=25.82 E-value=1.7e+02 Score=36.01 Aligned_cols=108 Identities=18% Similarity=0.233 Sum_probs=70.7
Q ss_pred hhHHHHHHHhhhhhccchhHHHHHHHHHHHhhcCCCCCCCcccccccCCccCchhcHHHHHHhhcCCCcchHHHHHHHHH
Q 001069 17 VGPSLDKIIKNAAWRKHAHLVSSCKSVLDKLDSISDDPSQVSSSLFGLSQNDAGLVLHPIFLALDSAYPKVVEPALECAF 96 (1166)
Q Consensus 17 l~~~L~~i~~e~~~rK~~~Lr~A~e~al~~lk~~~~~~~~~~~~~~~~~~~~~~~i~~Pf~lAC~tk~~kl~~~aLdclq 96 (1166)
+...+.+++.+ ++|-+|+++=-++-.+-...+.. .... ++.++.-....+++.++..|+.++.
T Consensus 115 l~~~v~~ll~~----~~~~VRk~A~~~l~~i~~~~p~~------------~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~ 177 (526)
T PF01602_consen 115 LIPDVIKLLSD----PSPYVRKKAALALLKIYRKDPDL------------VEDE-LIPKLKQLLSDKDPSVVSAALSLLS 177 (526)
T ss_dssp HHHHHHHHHHS----SSHHHHHHHHHHHHHHHHHCHCC------------HHGG-HHHHHHHHTTHSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC----CchHHHHHHHHHHHHHhccCHHH------------HHHH-HHHHHhhhccCCcchhHHHHHHHHH
Confidence 34445555553 46677776555554443332210 1223 7888888888899999999999998
Q ss_pred HHHhcCCCCCCCCCCCCCCCCCCCCCCCcccchHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHhhc
Q 001069 97 KLFSLGLARGEIEGESDNTNTTSTTNTNQKNFNIIYKLIEAICKVCGIGEEPIELSVLRVLLSAVRS 163 (1166)
Q Consensus 97 KLIs~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lid~iie~Ic~c~~~~de~VqLqILk~Llt~v~s 163 (1166)
-+ ..++. ....++..++..+|......++-+|.++++.|-.....
T Consensus 178 ~i--------~~~~~--------------~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~ 222 (526)
T PF01602_consen 178 EI--------KCNDD--------------SYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPM 222 (526)
T ss_dssp HH--------HCTHH--------------HHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSS
T ss_pred HH--------ccCcc--------------hhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccC
Confidence 88 11110 01268888999998886667888999999998765443
No 28
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=23.01 E-value=2.2e+02 Score=26.73 Aligned_cols=107 Identities=15% Similarity=0.064 Sum_probs=60.2
Q ss_pred cHHHHHHhhcCCCcchHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCcccchHHH-HHHHHHHhhcCCCCCcch
Q 001069 72 VLHPIFLALDSAYPKVVEPALECAFKLFSLGLARGEIEGESDNTNTTSTTNTNQKNFNIIY-KLIEAICKVCGIGEEPIE 150 (1166)
Q Consensus 72 i~~Pf~lAC~tk~~kl~~~aLdclqKLIs~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lid-~iie~Ic~c~~~~de~Vq 150 (1166)
++.++.--+...++++...|+.||..|.... +.. ...+++ .+++.++++....+..|+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~--~~~-------------------~~~~~~~~~i~~l~~~l~~~~~~v~ 66 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGN--NDN-------------------IQAVVEAGGLPALVQLLKSEDEEVV 66 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCC--HHH-------------------HHHHHHCCChHHHHHHHhCCCHHHH
Confidence 5666666667888999999999999988762 100 112223 455555555444567777
Q ss_pred hHHHHHHHHHhhcCC---cccchHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Q 001069 151 LSVLRVLLSAVRSPC---LLIRGDCLLLIVRTCYNVYLGGSSGTNQICAKSVLAQI 203 (1166)
Q Consensus 151 LqILk~Llt~v~s~~---~~vHg~~Ll~avrtCynI~l~Sk~~~nq~tA~ATLtQm 203 (1166)
-..+.+|-.+..... -.++...++..+.-+- ...+..++..|-++|.++
T Consensus 67 ~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l----~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 67 KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLL----DSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHH----hcCCHHHHHHHHHHHHHh
Confidence 777777766655432 1112222222222222 233555556666666655
No 29
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=22.04 E-value=8.1e+02 Score=24.58 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=43.1
Q ss_pred HHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHh
Q 001069 463 SLLKNSALSVMAVFQLQCSIFMSLLSKYRSGLKAEIG--IFFPMLVLRVLENVLQPSFVQKMTVLNLLEKIS 532 (1166)
Q Consensus 463 ~Llrn~~s~~~~vf~~slrif~~L~~~~r~~LK~EiE--vfl~~lil~iLe~~~~~~~~qk~l~LE~l~~l~ 532 (1166)
.|-+-+.+.++.+--+++.++=.++.+....+..|+. -|+..++ +++.+.+..+..-|.-+|+++..+.
T Consensus 41 aL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~-~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 41 AIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELV-KIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHH-HHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 3333444556777777788887888777776666663 4777754 6665432233345556777777665
No 30
>PF09724 DUF2036: Uncharacterized conserved protein (DUF2036); InterPro: IPR019128 Sister chromatid cohesion protein DCC1 is a component of the RFC-like complex CTF18-RFC. This complex is required for the efficient establishment of chromosome cohesion during S-phase and may load or unload POL30/PCNA. During a clamp loading circle, the RFC:clamp complex binds to DNA and the recognition of the double-stranded/single-stranded junction stimulates ATP hydrolysis by RFC. The complex presumably provides bipartite ATP sites in which one subunit supplies a catalytic site for hydrolysis of ATP bound to the neighbouring subunit. Dissociation of RFC from the clamp leaves the clamp encircling DNA [, ].
Probab=22.03 E-value=2.8e+02 Score=32.41 Aligned_cols=132 Identities=16% Similarity=0.210 Sum_probs=83.7
Q ss_pred CCCCHHHHHHHhHcCCC---------CChhHHhhhccccchHHHHHHHHHH-hcCCCCCCChHHHHHHHHccCcCCCchH
Q 001069 691 VGDSPEEVASFLKNTTG---------LNETMIGDYLGEREEFSLKVMHAYV-DSFNFKGMDFGHAIRFFLRGFRLPGEAQ 760 (1166)
Q Consensus 691 i~~~p~~iA~fL~~~~~---------L~k~~iGeyLg~~~~~~~~vl~~y~-~~fdf~~~~i~~ALR~fl~~frLPgE~Q 760 (1166)
+..+..++.+.|....+ |+..-+.+.| ..++...+ +.+++.+.++++....+... +--..
T Consensus 135 vq~S~~El~~~l~~l~~~ei~G~~r~Ls~~~~~~~L-------~~il~~~~~~~~~~~~~~~~~~~~~l~~~---~~p~~ 204 (325)
T PF09724_consen 135 VQASEAELRQALKELGACEIDGYWRLLSPSYLFEIL-------DLILTSAVEESWDLDQFPVEEVVEALEED---EYPRE 204 (325)
T ss_pred CCccHHHHHHHHHHCCEEEECCEEEECCHHHHHHHH-------HHHHHHHHHcCCCcccCCHHHHHHHhccc---CCCHH
Confidence 34467778887776543 3333333333 12222222 24678899999998887755 44567
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHhhhhhccccccccCCCCHHHHHHhhccC-CC--CCCCCHHHHHHHH
Q 001069 761 KIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGI-DD--GKDLPEEYLGVLY 837 (1166)
Q Consensus 761 ~Idri~e~Fa~~y~~~Np~~f~~~d~~y~LaysiimLnTDlHn~~vk~kmt~~~Fi~n~rg~-~~--g~d~~~~~L~~iY 837 (1166)
.++.++..|+.+.-.+ +..|.=....-+-.|++-+|..-.+. +|..++|...-+.. -. +.+..-++|.++|
T Consensus 205 v~~~vl~~~~~~~~~~-~~~~~Ld~~ki~~~~a~~lL~~~~~~-----~~~~~eFl~~Wk~~lP~~~~~~~~l~~L~G~~ 278 (325)
T PF09724_consen 205 VVEHVLRKFGTREDDD-DSWWKLDEDKICRWFAIQLLKAHASS-----SFPLDEFLEAWKSSLPEFFGMDPDLEMLRGLA 278 (325)
T ss_pred HHHHHHHHhCCCccCC-CceEEcCHHHHHHHHHHHHHHhcccC-----CCCHHHHHHHHHHhCCCcCCCCCCHHHhCCee
Confidence 8888888885544433 22232222344566788888776554 89999999987653 44 6677888888887
Q ss_pred H
Q 001069 838 D 838 (1166)
Q Consensus 838 ~ 838 (1166)
-
T Consensus 279 ~ 279 (325)
T PF09724_consen 279 L 279 (325)
T ss_pred E
Confidence 6
No 31
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=21.99 E-value=1.4e+02 Score=42.69 Aligned_cols=92 Identities=8% Similarity=0.279 Sum_probs=53.0
Q ss_pred HhhHHHHHHHHHhhhc--c-CcHHHHHHHHHHHHHHHHHHHhcCCchH------HHHHHHHHHhh-ccCCCcccchhhhH
Q 001069 925 VCWGPMLAAFSVTLDQ--S-DDKLATNQCLQGFRHAVHVTAVMGMQTQ------RDAFVTSVAKF-TYLHCAADMKQKNV 994 (1166)
Q Consensus 925 ~~W~pilaaLS~~f~~--s-~d~~~i~~~L~G~~~~i~Ia~~f~l~~~------rDafi~sL~kf-T~L~~~~~~~~Knv 994 (1166)
.+|.++-..++-.|.. + .+..+..-+++++++ +|-.|--..+ -+.|+..|-.. ..- ...+++.
T Consensus 1129 l~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQ---Ls~kfle~eEL~~f~FQkefLkPfe~im~~s-~~~eVrE--- 1201 (1780)
T PLN03076 1129 LVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQ---LSMKFLEREELANYNFQNEFMKPFVIVMRKS-NAVEIRE--- 1201 (1780)
T ss_pred eehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHH---HHHHhcchhhhhchhHHHHHHHHHHHHHHhc-CchHHHH---
Confidence 4777777777766654 2 244555555555543 4443332222 12344443321 110 0112222
Q ss_pred HHHHHHHHHHhhcCCcchhcHHHHHHHHH
Q 001069 995 DAVKAIISIAIEDGNHLQEAWEHILTCLS 1023 (1166)
Q Consensus 995 ~aik~Ll~Ia~~~Gn~L~~sW~~IL~~Is 1023 (1166)
..++++-.+....|+.++.||+.|+.+++
T Consensus 1202 ~ILeCv~qmI~s~~~nIkSGWktIF~VLs 1230 (1780)
T PLN03076 1202 LIIRCVSQMVLSRVNNVKSGWKSMFMVFT 1230 (1780)
T ss_pred HHHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence 46788888888999999999999999987
No 32
>PF14677 FANCI_S3: FANCI solenoid 3; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=20.96 E-value=6.7e+02 Score=27.77 Aligned_cols=93 Identities=12% Similarity=0.143 Sum_probs=43.9
Q ss_pred HHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhhccCCCc-ccchhhhHHHHHHHHHHH----
Q 001069 930 MLAAFSVTLDQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCA-ADMKQKNVDAVKAIISIA---- 1004 (1166)
Q Consensus 930 ilaaLS~~f~~s~d~~~i~~~L~G~~~~i~Ia~~f~l~~~rDafi~sL~kfT~L~~~-~~~~~Knv~aik~Ll~Ia---- 1004 (1166)
...-+..+ ++ .|..+...|++||+.|.++++.+ .+..+..|+..+.--+.-... .+........|+...+.-
T Consensus 80 ~i~~~~~~-~d-~~~~~s~LclEcf~~~~~~v~~~-y~~k~~~FL~~i~~~~~~~~~~~d~~~~i~~~I~~f~r~~~~~~ 156 (219)
T PF14677_consen 80 CISRLSEV-ED-FDKQVSLLCLECFLEILSTVCQR-YPDKFSQFLSAIDMTDDNAEEEKDLTERIQFQIRQFQRELENFL 156 (219)
T ss_dssp HH--------------HHHHHHHHHHHHHHHHHHT-SGGGHHHHHHHTS----STTTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcchhh-cC-CCcHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhccccCCccccccHHHHHHHHHHHHHHHHhhcc
Confidence 44455555 34 34788899999999999999643 455666677665332221111 244445555666655555
Q ss_pred -hhcCCcchhcHHHHHHHHHHH
Q 001069 1005 -IEDGNHLQEAWEHILTCLSRI 1025 (1166)
Q Consensus 1005 -~~~Gn~L~~sW~~IL~~Is~L 1025 (1166)
...++.-..-=-.+++|++.|
T Consensus 157 s~~~e~~~~K~~~~Lv~ils~L 178 (219)
T PF14677_consen 157 SSEEEDFNSKEAVLLVNILSQL 178 (219)
T ss_dssp HS--SS--SHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHH
Confidence 233444343444556666555
Done!