Query 001069
Match_columns 1166
No_of_seqs 345 out of 1057
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 09:28:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001069.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001069hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ltl_A Brefeldin A-inhibited g 100.0 4.9E-63 1.7E-67 523.2 20.3 196 656-851 11-208 (211)
2 1r8s_E ARNO; protein transport 100.0 6E-63 2E-67 521.0 20.6 195 658-852 7-201 (203)
3 1ku1_A ARF guanine-nucleotide 100.0 8.9E-61 3E-65 513.5 19.2 196 656-853 16-228 (230)
4 1xsz_A Guanine nucleotide exch 100.0 2.5E-55 8.5E-60 493.3 19.6 192 663-854 7-203 (356)
5 2r09_A Cytohesin-3; autoinhibi 100.0 1.9E-53 6.4E-58 490.3 21.7 192 661-852 12-203 (347)
6 2qk2_A LP04448P; mini spindles 81.0 52 0.0018 34.3 17.6 165 425-602 29-209 (242)
7 2qk2_A LP04448P; mini spindles 73.3 34 0.0012 35.8 13.3 150 18-208 58-208 (242)
8 2of3_A ZYG-9; multifunctional 66.2 1E+02 0.0036 33.5 15.4 163 426-604 61-242 (266)
9 2qk1_A Protein STU2; STU2P, XM 52.1 1.1E+02 0.0037 32.5 12.4 164 427-601 32-223 (249)
10 4ffb_C Protein STU2; tubulin f 45.8 28 0.00096 37.5 6.6 109 70-214 138-247 (278)
11 4ffb_C Protein STU2; tubulin f 42.9 84 0.0029 33.6 9.8 142 427-600 71-214 (278)
12 2qk1_A Protein STU2; STU2P, XM 38.8 2.8E+02 0.0094 29.3 13.0 154 18-207 62-222 (249)
13 3g2s_A C-terminal fragment of 33.1 2.4E+02 0.008 27.9 10.4 63 469-532 58-125 (149)
14 1mhq_A ADP-ribosylation factor 32.8 2.6E+02 0.0091 27.4 10.7 70 462-532 41-115 (148)
15 1juq_A ADP-ribosylation factor 27.8 4.3E+02 0.015 26.5 11.5 69 463-532 54-127 (171)
16 1w9c_A CRM1 protein, exportin 26.5 4.9E+02 0.017 29.0 12.6 180 394-602 6-200 (321)
17 2vgl_B AP-2 complex subunit be 26.5 4.8E+02 0.017 31.0 13.8 154 17-206 122-312 (591)
18 1x5b_A Signal transducing adap 24.5 2E+02 0.0068 28.8 8.2 63 467-532 60-124 (163)
19 4fdd_A Transportin-1; heat rep 20.5 2.8E+02 0.0096 34.5 10.4 95 428-532 603-698 (852)
20 1elk_A Target of MYB1; superhe 20.2 3.4E+02 0.012 26.8 8.9 63 471-533 66-130 (157)
21 4fdd_A Transportin-1; heat rep 20.1 7.1E+02 0.024 30.8 14.0 123 71-211 128-250 (852)
No 1
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=100.00 E-value=4.9e-63 Score=523.21 Aligned_cols=196 Identities=52% Similarity=0.921 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccCchhhHHHHHhcCCCCCCHHHHHHHhHcCCCCChhHHhhhccccchHHHHHHHHHHhcC
Q 001069 656 TLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSF 735 (1166)
Q Consensus 656 ~l~~~k~~K~~l~~~~~~FN~~pk~gi~~L~~~~~i~~~p~~iA~fL~~~~~L~k~~iGeyLg~~~~~~~~vl~~y~~~f 735 (1166)
+|++.|++|+.+.+|+.+||.||++||+||+++|+|+++|++||+||+++++|||++||+|||+++++|.+||++||++|
T Consensus 11 ~~~~~k~rK~~~~~g~~~FN~~PkkGi~~L~~~g~i~~~p~~iA~FL~~~~~L~k~~igeyLg~~~~fn~~vL~~yv~~f 90 (211)
T 3ltl_A 11 QFEVLKQQKEIIEQGIDLFNKKPKRGIQYLQEQGMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDKFNKEVMYAYVDQH 90 (211)
T ss_dssp ----CCSHHHHHHHHHHHHHHCHHHHHHHHHHTTSSCSSHHHHHHHHHHCTTSCHHHHHHHHTCCSHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHcCCCCCCHHHHHHHHHhCcCccHHHHHHHHhccchhHHHHHHHHHHhc
Confidence 68889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHccCcCCCchHHHHHHHHHHHHHhhhcCCC--CCCCchhHHHHHHHHhhhhhccccccccCCCCHH
Q 001069 736 NFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPS--SFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKA 813 (1166)
Q Consensus 736 df~~~~i~~ALR~fl~~frLPgE~Q~Idri~e~Fa~~y~~~Np~--~f~~~d~~y~LaysiimLnTDlHn~~vk~kmt~~ 813 (1166)
||+|++||+|||.||.+||||||+|+||||||+||+|||+|||+ +|.|+|+||+|+|||||||||+|||+||+|||++
T Consensus 91 dF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~~~f~s~D~~~iLaySiImLNTDlHn~~vk~kMt~~ 170 (211)
T 3ltl_A 91 DFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMTKE 170 (211)
T ss_dssp CCCSSCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHTCTTCCSCSSHHHHHHHHHHHHHHHHHHTCTTCCSCCCHH
T ss_pred CCCCCCHHHHHHHHHHhCcCCCchhHHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHHHHhhhhcCccccCCCCHH
Confidence 99999999999999999999999999999999999999999997 6999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCCCHHHHHHHHHHHhhCccccCCCC
Q 001069 814 DFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADS 851 (1166)
Q Consensus 814 ~Fi~n~rg~~~g~d~~~~~L~~iY~~I~~~ei~~~~~~ 851 (1166)
+|++|+||+|+|+|||+++|++||++|+++||+|+++.
T Consensus 171 ~Fi~n~rg~n~g~d~p~e~L~~iYd~I~~~ei~l~~~~ 208 (211)
T 3ltl_A 171 QYIKMNRGINDSKDLPEEYLSAIYNEIAGKKISMKETK 208 (211)
T ss_dssp HHHHHTCSSCSSSSCCHHHHHHHHHHHHHSCCCCC---
T ss_pred HHHHHhhcccCCCCCCHHHHHHHHHHHHhCCccCCCCC
Confidence 99999999999999999999999999999999999875
No 2
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=100.00 E-value=6e-63 Score=520.95 Aligned_cols=195 Identities=52% Similarity=0.876 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHHHHHHhccCchhhHHHHHhcCCCCCCHHHHHHHhHcCCCCChhHHhhhccccchHHHHHHHHHHhcCCC
Q 001069 658 EQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNF 737 (1166)
Q Consensus 658 ~~~k~~K~~l~~~~~~FN~~pk~gi~~L~~~~~i~~~p~~iA~fL~~~~~L~k~~iGeyLg~~~~~~~~vl~~y~~~fdf 737 (1166)
++.+++|+.+..|+.+||.+|++||+||+++|+++++|++||+||+.+++|||++||+|||+++++|.+||++||+.|||
T Consensus 7 ~~~~~~k~~~~~g~~~FN~~PkkGi~~L~~~~~l~~~p~~iA~fL~~~~~l~k~~igeyLg~~~~~n~~vl~~y~~~fdF 86 (203)
T 1r8s_E 7 SKTLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLHAFVDLHEF 86 (203)
T ss_dssp ------CHHHHHHHHHHHHCHHHHHHHHHHTTSSCSSHHHHHHHHHHCTTCCHHHHHHHHTCCSHHHHHHHHHHHHTCCC
T ss_pred hhHHHHHHHHHHHHHHHhhCHHHHHHHHHHCCCCCCCHHHHHHHHHHCcCcCHHHHHHHHhccchHHHHHHHHHHHhcCC
Confidence 44577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHccCcCCCchHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHhhhhhccccccccCCCCHHHHHH
Q 001069 738 KGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIR 817 (1166)
Q Consensus 738 ~~~~i~~ALR~fl~~frLPgE~Q~Idri~e~Fa~~y~~~Np~~f~~~d~~y~LaysiimLnTDlHn~~vk~kmt~~~Fi~ 817 (1166)
+|++||+|||.||.+||||||+|+||||||+||+|||+|||++|.|+|+||+|||||||||||+|||+||+|||+++||+
T Consensus 87 ~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~f~s~D~~~vLaySiImLNTDlHn~~vk~kMt~~~Fi~ 166 (203)
T 1r8s_E 87 TDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVA 166 (203)
T ss_dssp TTCCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHH
T ss_pred CCCcHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHhCCcccCCcchHHHHHHHHHHhcccccCcccccccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCCCHHHHHHHHHHHhhCccccCCCCC
Q 001069 818 NNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSS 852 (1166)
Q Consensus 818 n~rg~~~g~d~~~~~L~~iY~~I~~~ei~~~~~~~ 852 (1166)
|+||+|+|+|||+++|+.||++|+++||++++|+.
T Consensus 167 n~rgin~g~d~p~e~L~~iYd~I~~~ei~~~~d~~ 201 (203)
T 1r8s_E 167 MNRGINEGGDLPEELLRNLYDSIRNEPFKIPEDDG 201 (203)
T ss_dssp HTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCCC--
T ss_pred HhhcccCCCCCCHHHHHHHHHHHHhCCCCCccCcC
Confidence 99999999999999999999999999999998863
No 3
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=100.00 E-value=8.9e-61 Score=513.46 Aligned_cols=196 Identities=36% Similarity=0.619 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccCchhhHHHHHhcCCCCC-CHHHHHHHhHcC-CCCChhHHhhhccccchHHHHHHHHHHh
Q 001069 656 TLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGD-SPEEVASFLKNT-TGLNETMIGDYLGEREEFSLKVMHAYVD 733 (1166)
Q Consensus 656 ~l~~~k~~K~~l~~~~~~FN~~pk~gi~~L~~~~~i~~-~p~~iA~fL~~~-~~L~k~~iGeyLg~~~~~~~~vl~~y~~ 733 (1166)
.++++|++|+.+.+|+.+||.+||+||+||+++|+|++ +|++||+||+++ ++|||++||+|||++++ .+||++||+
T Consensus 16 ~~~~~r~~K~~~~~~~~~FN~~PkkGI~~L~~~g~l~~~~~~~iA~fL~~~~~~L~k~~iGeyLg~~~n--~~vL~~yv~ 93 (230)
T 1ku1_A 16 PRGSHMDRKTEFIECTNAFNEKPKKGIPMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPDK--VSLLNEYIR 93 (230)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSSCSSHHHHHHHHHHTTTTSCHHHHHHHHTCGGG--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCCcCCCCHHHHHHHHHHcCcccCHHHHHHHHcCccH--HHHHHHHHh
Confidence 35667889999999999999999999999999999985 899999999875 57999999999998764 789999999
Q ss_pred cCCCCCCChHHHHHHHHccCcCCCchHHHHHHHHHHHHHhhhcCC---------------CCCCCchhHHHHHHHHhhhh
Q 001069 734 SFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNP---------------SSFTSADTAYVLAYSVIMLN 798 (1166)
Q Consensus 734 ~fdf~~~~i~~ALR~fl~~frLPgE~Q~Idri~e~Fa~~y~~~Np---------------~~f~~~d~~y~LaysiimLn 798 (1166)
+|||+|++||+|||.||.+||||||+|+||||||+||+|||+||| .+|.|+|+||+|||||||||
T Consensus 94 ~fdF~g~~ld~ALR~fL~~f~LPGEaQ~IdRile~Fa~rY~~~N~~~p~~~~~~~~~~~~~~f~s~D~vyvLaySiImLN 173 (230)
T 1ku1_A 94 LFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDPSKISDNAEDDISTVQPDADSVFILSYSIIMLN 173 (230)
T ss_dssp TSCCTTCCHHHHHHHHTTTCCCCSSHHHHHHHHHHHHHHHHHTSCCCGGGCCSCCTTCGGGCCCCHHHHHHHHHHHHHHH
T ss_pred hccCCCCCHHHHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHhCCCCccccccccccccccccCCchHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999997 36899999999999999999
Q ss_pred hccccccccCCCCHHHHHHhhccCCCCCCCCHHHHHHHHHHHhhCccccCCCCCC
Q 001069 799 TDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSA 853 (1166)
Q Consensus 799 TDlHn~~vk~kmt~~~Fi~n~rg~~~g~d~~~~~L~~iY~~I~~~ei~~~~~~~~ 853 (1166)
||||||+||+|||+++|++|+||+|+|+|||++||++||++|+++||+|++|+.+
T Consensus 174 TDlHnp~vk~kMT~~~FikN~rg~n~g~d~p~e~L~~iY~~I~~~ei~~~ee~~g 228 (230)
T 1ku1_A 174 TDLHNPQVKEHMSFEDYSGNLKGCCNHKDFPFWYLDRVYCSIRDKEIVMPEEHHG 228 (230)
T ss_dssp HHHTCTTCSSCCCHHHHHHHTTTCBTTBCCCHHHHHHHHHHHHHSCCCCC-----
T ss_pred hhhccccccCCCCHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhCcccCCccCCC
Confidence 9999999999999999999999999999999999999999999999999999754
No 4
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
Probab=100.00 E-value=2.5e-55 Score=493.35 Aligned_cols=192 Identities=36% Similarity=0.618 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHhcCC--CCCCHHHHHHHhHc-CCCCChhHHhhhccccchHHHHHHHHHHhcCCCCC
Q 001069 663 YKIELQKGISLFNRKPSKGIEFLINSKK--VGDSPEEVASFLKN-TTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKG 739 (1166)
Q Consensus 663 ~K~~l~~~~~~FN~~pk~gi~~L~~~~~--i~~~p~~iA~fL~~-~~~L~k~~iGeyLg~~~~~~~~vl~~y~~~fdf~~ 739 (1166)
.|+.+.+|+.+||.+|++||+||++.+. ..++|++||+||++ +++|||++||+|||+++++|.+||++||++|||+|
T Consensus 7 ~~k~~~e~i~~FN~~PkkGI~~L~~~~~~~~~~~p~~IA~FL~~~~~~LdK~~IGeyLg~~~~~n~~VL~~yv~~fdF~g 86 (356)
T 1xsz_A 7 IEKAQREIIEAFNAKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQVLKAFTSQMNFNG 86 (356)
T ss_dssp HHHTHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTTTSCHHHHHHHHTCCSHHHHHHHHHHHHTSCCTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccccCCCCHHHHHHHHHhcCCCCCHHHHHHHHcCCchHHHHHHHHHHHhcCCCC
Confidence 3455678999999999999999998632 23579999999986 79999999999999999999999999999999999
Q ss_pred CChHHHHHHHHccCcCCCchHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHhhhhhcccccccc--CCCCHHHHHH
Q 001069 740 MDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVK--DKMTKADFIR 817 (1166)
Q Consensus 740 ~~i~~ALR~fl~~frLPgE~Q~Idri~e~Fa~~y~~~Np~~f~~~d~~y~LaysiimLnTDlHn~~vk--~kmt~~~Fi~ 817 (1166)
++||+|||.||.+||||||+|+||||||+||+|||+|||+.|.|+|+||+|+|||||||||+|||+|| +|||+++|++
T Consensus 87 ~~ld~ALR~fL~~frLPGEaQ~IDRile~FA~rY~~~Np~~f~s~D~~yvLaySiImLNTDLHNpnvk~k~kMT~~dFik 166 (356)
T 1xsz_A 87 QSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADAAYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKR 166 (356)
T ss_dssp SCHHHHHHHHHHTSCBCSSHHHHHHHHHHHHHHHHHHCTTTSSSHHHHHHHHHHHHHHHHHHHCTTSCGGGSCCHHHHHH
T ss_pred CCHHHHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHhCCCccCChhHHHHHHHHHHHhcccccCccccccCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred hhccCCCCCCCCHHHHHHHHHHHhhCccccCCCCCCc
Q 001069 818 NNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAP 854 (1166)
Q Consensus 818 n~rg~~~g~d~~~~~L~~iY~~I~~~ei~~~~~~~~~ 854 (1166)
|+||+|+|+|||+++|++||++|+++||++...+..+
T Consensus 167 N~rgin~g~d~p~e~L~~iYd~I~~~ei~l~~~~~~p 203 (356)
T 1xsz_A 167 NLRGGNNGGDFDAKFLEELYSEIKAKPFELNFVKTSP 203 (356)
T ss_dssp HTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCBCSSCS
T ss_pred HhhcccCCCCCCHHHHHHHHHHHHhCCCccCCcccCc
Confidence 9999999999999999999999999999998776544
No 5
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=100.00 E-value=1.9e-53 Score=490.34 Aligned_cols=192 Identities=51% Similarity=0.876 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHHhcCCCCCCHHHHHHHhHcCCCCChhHHhhhccccchHHHHHHHHHHhcCCCCCC
Q 001069 661 RAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGM 740 (1166)
Q Consensus 661 k~~K~~l~~~~~~FN~~pk~gi~~L~~~~~i~~~p~~iA~fL~~~~~L~k~~iGeyLg~~~~~~~~vl~~y~~~fdf~~~ 740 (1166)
+.+|..+.+|+.+||.+|++||+||+++|+++++|++||+||+.+++|||++||+|||+++++|.+||++||+.|||+|+
T Consensus 12 ~~~~~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~vl~~~~~~~~f~~~ 91 (347)
T 2r09_A 12 TQRNAQIAMGRKKFNMDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIKVLQAFVELHEFADL 91 (347)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSCCSHHHHHHHHHHCTTCCHHHHHHHHHCCSHHHHHHHHHHHHTSCCTTC
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHCCCCCCCHHHHHHHHHhCcCcCHHHHHHHhcCCCchHHHHHHHHHHhcCcCCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHccCcCCCchHHHHHHHHHHHHHhhhcCCCCCCCchhHHHHHHHHhhhhhccccccccCCCCHHHHHHhhc
Q 001069 741 DFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNR 820 (1166)
Q Consensus 741 ~i~~ALR~fl~~frLPgE~Q~Idri~e~Fa~~y~~~Np~~f~~~d~~y~LaysiimLnTDlHn~~vk~kmt~~~Fi~n~r 820 (1166)
+||+|||.||.+||||||+|+||||||+||+|||+|||++|.|+|+||+|+|||||||||+|||++|+|||+++|++|+|
T Consensus 92 ~~~~alR~~l~~f~lpgE~q~idril~~Fa~~y~~~np~~~~~~d~~~~l~~siimLntdlhn~~~k~kmt~~~fi~n~~ 171 (347)
T 2r09_A 92 NLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNHNVRDKPTAERFITMNR 171 (347)
T ss_dssp CHHHHHHHHTTSCCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHTT
T ss_pred CHHHHHHHHHHhCcCCCchHHHHHHHHHHHHHHHHhCCcccCChhHHHHHHHHHHHHhhhhhcccccccCCHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhCccccCCCCC
Q 001069 821 GIDDGKDLPEEYLGVLYDQIVKNEIKMNADSS 852 (1166)
Q Consensus 821 g~~~g~d~~~~~L~~iY~~I~~~ei~~~~~~~ 852 (1166)
|+|+|+|||+++|+.+|++|+.+||.+++++.
T Consensus 172 ~~~~~~~~p~e~L~~iY~~I~~~ei~~~~e~~ 203 (347)
T 2r09_A 172 GINEGGDLPEELLRNLYESIKNEPFKIPEDDG 203 (347)
T ss_dssp TTBTTBCCCHHHHHHHHHHHHHSCCCCTTCCS
T ss_pred cccCCCCCCHHHHHHHHHhhccCccccccccc
Confidence 99999999999999999999999999988753
No 6
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=80.96 E-value=52 Score=34.30 Aligned_cols=165 Identities=13% Similarity=0.124 Sum_probs=102.8
Q ss_pred hhhhHHHHHHHHHHHHcCCccccCcHHHHHHHHHHHHHHHHHhcc-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001069 425 LRGKILSLELLKVVTDNGGPVWLSNARFLIAIKQFLCLSLLKNSA-LSVMAVFQLQCSIFMSLLSKYRSGLKAEIGIFFP 503 (1166)
Q Consensus 425 lrsk~l~LeLi~~iLe~~~~~f~~~~~l~~lik~~Lc~~Llrn~~-s~~~~vf~~slrif~~L~~~~r~~LK~EiEvfl~ 503 (1166)
.+.|.-|++-|..+++.++.....+ + ..+++.|.+.+. ..+..+...++.++..|...++..+...++.++.
T Consensus 29 w~~R~~a~~~L~~l~~~~~~~~~~~--~-----~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp 101 (242)
T 2qk2_A 29 WTLRKESLEVLEKLLTDHPKLENGE--Y-----GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVP 101 (242)
T ss_dssp HHHHHHHHHHHHHHHHHCSSBCCCC--C-----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCCCC--H-----HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4468899999999999865543221 1 134445555553 5678889999999999999999999888888998
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHHHhcCh---hHHHHHhHhcCCCCCCccHHHHHHHHHHhhccCCCCCCCC-----
Q 001069 504 MLVLRVLENVLQPSFVQKMTVLNLLEKISQDS---QIIVDVFVNYDCDVDSPNIFERIVNGLLKTALGPPPGSTT----- 575 (1166)
Q Consensus 504 ~lil~iLe~~~~~~~~qk~l~LE~l~~l~~~p---~~l~ely~NYDCd~~~~nIfe~li~~Lsk~a~~~~~~~~~----- 575 (1166)
.|+.. +.+. ...-|..+.+.+..++... .++-.+....+ + ....+=+..+..|..++....+....
T Consensus 102 ~ll~~-l~d~---~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~-~-~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~ 175 (242)
T 2qk2_A 102 SLLEK-FKEK---KPNVVTALREAIDAIYASTSLEAQQESIVESLS-N-KNPSVKSETALFIARALTRTQPTALNKKLLK 175 (242)
T ss_dssp HHHHG-GGCC---CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTT-C-SCHHHHHHHHHHHHHHHTTCCGGGCCHHHHH
T ss_pred HHHHH-HcCC---CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-C-CChHHHHHHHHHHHHHHHHcCCCCccHHHHH
Confidence 88644 4333 2345667777888777542 33444443333 2 23466677777777754322110000
Q ss_pred CCCc-------hhhHHhhhhhHHHHHHHHHHHHH
Q 001069 576 SLSP-------AQDIAFRYESVKCLVSIIRSMGT 602 (1166)
Q Consensus 576 ~~~~-------~q~~~l~~~aL~~L~~il~sl~~ 602 (1166)
...+ .....+|..|.+||..+...+..
T Consensus 176 ~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 176 LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence 0000 11345778888888887776654
No 7
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=73.34 E-value=34 Score=35.78 Aligned_cols=150 Identities=13% Similarity=0.108 Sum_probs=100.9
Q ss_pred hHHHHHHHhhhhhccchhHHHHHHHHHHHhhcCCCCCCCcccccccCCccCchhcHHHHHHhhcCCCcchHHHHHHHHHH
Q 001069 18 GPSLDKIIKNAAWRKHAHLVSSCKSVLDKLDSISDDPSQVSSSLFGLSQNDAGLVLHPIFLALDSAYPKVVEPALECAFK 97 (1166)
Q Consensus 18 ~~~L~~i~~e~~~rK~~~Lr~A~e~al~~lk~~~~~~~~~~~~~~~~~~~~~~~i~~Pf~lAC~tk~~kl~~~aLdclqK 97 (1166)
.+.|.+++. +.+|+.+|.++=.++..|-..-.. .+. .....++.++.-++..+++++-..|..+|..
T Consensus 58 ~~~L~~~l~---kd~~~~V~~~a~~~l~~la~~l~~------~~~----~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~ 124 (242)
T 2qk2_A 58 VSALKKVIT---KDSNVVLVAMAGKCLALLAKGLAK------RFS----NYASACVPSLLEKFKEKKPNVVTALREAIDA 124 (242)
T ss_dssp HHHHHHHHH---HCSCHHHHHHHHHHHHHHHHHHGG------GGH----HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHHhh------hHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 445555553 236888888888888777643221 111 2346688888888889999999999999999
Q ss_pred HHhcCCCCCCCCCCCCCCCCCCCCCCCcccchHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHhhcCC-cccchHHHHHH
Q 001069 98 LFSLGLARGEIEGESDNTNTTSTTNTNQKNFNIIYKLIEAICKVCGIGEEPIELSVLRVLLSAVRSPC-LLIRGDCLLLI 176 (1166)
Q Consensus 98 LIs~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lid~iie~Ic~c~~~~de~VqLqILk~Llt~v~s~~-~~vHg~~Ll~a 176 (1166)
++.... ++.+++.|.....+....|+..++..|..++.+.. .......|-..
T Consensus 125 ~~~~~~---------------------------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l 177 (242)
T 2qk2_A 125 IYASTS---------------------------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLL 177 (242)
T ss_dssp HHTTSC---------------------------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHH
T ss_pred HHHcCC---------------------------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHH
Confidence 976310 24555566666556677899999999998776642 22333444444
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHHHHH
Q 001069 177 VRTCYNVYLGGSSGTNQICAKSVLAQIMVIVF 208 (1166)
Q Consensus 177 vrtCynI~l~Sk~~~nq~tA~ATLtQmi~~VF 208 (1166)
+-...... ..+++.+...|..+|..|...|=
T Consensus 178 ~p~l~~~l-~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 178 TTSLVKTL-NEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHHHH-TSSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHh-cCCChHHHHHHHHHHHHHHHHcC
Confidence 44444322 46888899999999999887773
No 8
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=66.19 E-value=1e+02 Score=33.48 Aligned_cols=163 Identities=17% Similarity=0.217 Sum_probs=95.6
Q ss_pred hhhHHHHHHHHHHHHcCCccccCcHHHHHHHHHHHHHHHH-HhcccCchhHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q 001069 426 RGKILSLELLKVVTDNGGPVWLSNARFLIAIKQFLCLSLL-KNSALSVMAVFQLQCSIFMSLLSKYRSG----LKAEIGI 500 (1166)
Q Consensus 426 rsk~l~LeLi~~iLe~~~~~f~~~~~l~~lik~~Lc~~Ll-rn~~s~~~~vf~~slrif~~L~~~~r~~----LK~EiEv 500 (1166)
+.+.=|++.|...++... +-+...=|-+++-+. |.+ ..++.++..++.++..++..++.. ...|...
T Consensus 61 k~~~~ale~L~~~l~~~~-------~~~~~~lDll~kw~~lr~~-d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~ 132 (266)
T 2of3_A 61 KQHLAALDSLVRLADTSP-------RSLLSNSDLLLKWCTLRFF-ETNPAALIKVLELCKVIVELIRDTETPMSQEEVSA 132 (266)
T ss_dssp HHHHHHHHHHHHHHHHCH-------HHHHHTHHHHHHHHHHHTT-SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhCh-------HHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 446789999999888633 332233333444333 333 558899999999999999888774 3677889
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhc--ChhHHHHHhHhcCCCCCCcc------HHHHHHHHHHhhccCCCCC
Q 001069 501 FFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQ--DSQIIVDVFVNYDCDVDSPN------IFERIVNGLLKTALGPPPG 572 (1166)
Q Consensus 501 fl~~lil~iLe~~~~~~~~qk~l~LE~l~~l~~--~p~~l~ely~NYDCd~~~~n------Ife~li~~Lsk~a~~~~~~ 572 (1166)
|++.++.++-++. .. -|..+-++++.++. -|+.+.+...+ += .++| .++.+...+.+..-+ +..
T Consensus 133 ~lP~LveKlGd~k--~~--vR~~~r~il~~l~~v~~~~~v~~~l~~--g~-ksKN~R~R~e~l~~l~~li~~~G~~-~~~ 204 (266)
T 2of3_A 133 FVPYLLLKTGEAK--DN--MRTSVRDIVNVLSDVVGPLKMTPMLLD--AL-KSKNARQRSECLLVIEYYITNAGIS-PLK 204 (266)
T ss_dssp HHHHHHHGGGCSS--HH--HHHHHHHHHHHHHHHHCHHHHHHHHHH--GG-GCSCHHHHHHHHHHHHHHHHHHCSG-GGG
T ss_pred HHHHHHHHhCCCh--HH--HHHHHHHHHHHHHHHCCHHHHHHHHHH--HH-ccCCHHHHHHHHHHHHHHHHhcCCC-ccc
Confidence 9999998886544 22 34445555555553 56656666555 22 2222 233333333333211 110
Q ss_pred CC---C---CCCchhhHHhhhhhHHHHHHHHHHHHHHH
Q 001069 573 ST---T---SLSPAQDIAFRYESVKCLVSIIRSMGTWM 604 (1166)
Q Consensus 573 ~~---~---~~~~~q~~~l~~~aL~~L~~il~sl~~~~ 604 (1166)
.- . ......+..+|..|+.|++.+-+.+.+-+
T Consensus 205 ~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 205 SLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp GGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred cccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 00 0 00011356789999999998887765533
No 9
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=52.07 E-value=1.1e+02 Score=32.51 Aligned_cols=164 Identities=15% Similarity=0.178 Sum_probs=98.2
Q ss_pred hhHHHHHHHHH-HHHcCCccc---cCcHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHH-HHHH-HHHHH
Q 001069 427 GKILSLELLKV-VTDNGGPVW---LSNARFLIAIKQFLCLSLLKNSALSVMAVFQLQCSIFMSLLSKYR-SGLK-AEIGI 500 (1166)
Q Consensus 427 sk~l~LeLi~~-iLe~~~~~f---~~~~~l~~lik~~Lc~~Llrn~~s~~~~vf~~slrif~~L~~~~r-~~LK-~EiEv 500 (1166)
-|.=+|+-|.. +++++..+. ..+.+++..++..+- .-.++.+...+++++..|...++ ..+. .-.+.
T Consensus 32 eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~-------~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~ 104 (249)
T 2qk1_A 32 DRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQ-------KDANIQAVALAAQSVELICDKLKTPGFSKDYVSL 104 (249)
T ss_dssp HHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHH-------HCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhc-------cCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH
Confidence 46778888888 888766665 233555555544321 23466777889999999998888 6775 66666
Q ss_pred HHHHHHHHHhcCCCCCch-hHHHHHHHHHHHHh------c-ChhHHHHHhHhcCCCCCCccHHHHHHHHHHhhccCCCCC
Q 001069 501 FFPMLVLRVLENVLQPSF-VQKMTVLNLLEKIS------Q-DSQIIVDVFVNYDCDVDSPNIFERIVNGLLKTALGPPPG 572 (1166)
Q Consensus 501 fl~~lil~iLe~~~~~~~-~qk~l~LE~l~~l~------~-~p~~l~ely~NYDCd~~~~nIfe~li~~Lsk~a~~~~~~ 572 (1166)
++..|+.++-+ . .+.. .+-..+|..|-.-+ . -+.++-+|+...+-. ...+=+..+.+|.+.+...+..
T Consensus 105 llp~ll~~l~d-k-k~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~~vk~~al~~l~~~~~~~~~~ 180 (249)
T 2qk1_A 105 VFTPLLDRTKE-K-KPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TPQIRMECTQLFNASMKEEKDG 180 (249)
T ss_dssp HHHHHHHGGGC-C-CHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHcC-C-CHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHcCCc
Confidence 77777644433 2 2222 11123444444444 2 336777888776543 4567777888888877532210
Q ss_pred --C-----CCCCCc-------hhhHHhhhhhHHHHHHHHHHHH
Q 001069 573 --S-----TTSLSP-------AQDIAFRYESVKCLVSIIRSMG 601 (1166)
Q Consensus 573 --~-----~~~~~~-------~q~~~l~~~aL~~L~~il~sl~ 601 (1166)
. .....| ..+..+|..|.+||..+.+.+.
T Consensus 181 ~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 181 YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 0 011111 1244588899999988876553
No 10
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=45.79 E-value=28 Score=37.47 Aligned_cols=109 Identities=13% Similarity=0.340 Sum_probs=66.4
Q ss_pred hhcHHHHHHhhcCCCcchHHHHHHHHHHHHhc-CCCCCCCCCCCCCCCCCCCCCCCcccchHHHHHHHHHHhhcCCCCCc
Q 001069 70 GLVLHPIFLALDSAYPKVVEPALECAFKLFSL-GLARGEIEGESDNTNTTSTTNTNQKNFNIIYKLIEAICKVCGIGEEP 148 (1166)
Q Consensus 70 ~~i~~Pf~lAC~tk~~kl~~~aLdclqKLIs~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lid~iie~Ic~c~~~~de~ 148 (1166)
+.++..+.-++..||||+...++.+|.+++.. |. ... +.+..+..++..+..|.++.|.+
T Consensus 138 ~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~-~~~------------------~~k~~l~~i~~~l~k~l~d~~~~ 198 (278)
T 4ffb_C 138 TQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGL-TNV------------------NVQTFLPELLKHVPQLAGHGDRN 198 (278)
T ss_dssp HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTT-TTC------------------CHHHHHHHHGGGHHHHHTCSSHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCC-CcC------------------CchhHHHHHHHHHHHHHhCCcHH
Confidence 45677777889999999999999999999864 21 111 13557788888888888888887
Q ss_pred chhHHHHHHHHHhhcCCcccchHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHhhhcc
Q 001069 149 IELSVLRVLLSAVRSPCLLIRGDCLLLIVRTCYNVYLGGSSGTNQICAKSVLAQIMVIVFTRVEED 214 (1166)
Q Consensus 149 VqLqILk~Llt~v~s~~~~vHg~~Ll~avrtCynI~l~Sk~~~nq~tA~ATLtQmi~~VF~Rv~~~ 214 (1166)
|-=.-++++.++.. ..|..+ +.-+..++.+- +.++.+.|..-|+++..+
T Consensus 199 VR~aA~~l~~~ly~-----~~G~~~----~~~~~~~l~~l--------kp~~~k~le~~f~k~~~~ 247 (278)
T 4ffb_C 199 VRSQTMNLIVEIYK-----VTGNNS----DLLEEILFKKL--------KPIQVKDLHKLFAKVGDE 247 (278)
T ss_dssp HHHHHHHHHHHHHT-----C---------------CTTSS--------CHHHHHHHHHHHSCCCC-
T ss_pred HHHHHHHHHHHHHH-----HhCcch----hhhhhhhhhcC--------CHHHHHHHHHHHHhcCCC
Confidence 76555555554321 223221 11222333332 234566778888887643
No 11
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=42.95 E-value=84 Score=33.63 Aligned_cols=142 Identities=13% Similarity=0.070 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHHHcCCccccCcHHHHHHHHHHHHHHHH-HhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001069 427 GKILSLELLKVVTDNGGPVWLSNARFLIAIKQFLCLSLL-KNSALSVMAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPML 505 (1166)
Q Consensus 427 sk~l~LeLi~~iLe~~~~~f~~~~~l~~lik~~Lc~~Ll-rn~~s~~~~vf~~slrif~~L~~~~r~~LK~EiEvfl~~l 505 (1166)
....+|++|..+++..+..+..+..+. ..-..+++.|+ |.+.+..+.+-..++.++..++.... ..+.++..+
T Consensus 71 v~~~al~~l~~~~~~~~~~~~~~~~~~-~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-----~~~~~~e~l 144 (278)
T 4ffb_C 71 AQEQAIVALNSLIDAFASSSLKNAHNI-TLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-----SITQSVELV 144 (278)
T ss_dssp HHHHHHHHHHHHHTTCC---CCHHHHH-HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-----SSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhcccchhH-HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-----cHHHHHHHH
Confidence 346799999999999888776654333 34455666666 55666677777777777766653211 112334444
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHHHhcChhHHHHHhHhcCCCCC-CccHHHHHHHHHHhhccCCCCCCCCCCCchhhHH
Q 001069 506 VLRVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVFVNYDCDVD-SPNIFERIVNGLLKTALGPPPGSTTSLSPAQDIA 584 (1166)
Q Consensus 506 il~iLe~~~~~~~~qk~l~LE~l~~l~~~p~~l~ely~NYDCd~~-~~nIfe~li~~Lsk~a~~~~~~~~~~~~~~q~~~ 584 (1166)
...+... ....|.-++..|.++. .+|.+..- .+.....++..|.+..... +..
T Consensus 145 -~~~l~~K---npkv~~~~l~~l~~~l----------~~fg~~~~~~k~~l~~i~~~l~k~l~d~------------~~~ 198 (278)
T 4ffb_C 145 -IPFFEKK---LPKLIAAAANCVYELM----------AAFGLTNVNVQTFLPELLKHVPQLAGHG------------DRN 198 (278)
T ss_dssp -GGGGGCS---CHHHHHHHHHHHHHHH----------HHHTTTTCCHHHHHHHHGGGHHHHHTCS------------SHH
T ss_pred -HHHHhcc---CHHHHHHHHHHHHHHH----------HHhCCCcCCchhHHHHHHHHHHHHHhCC------------cHH
Confidence 3555544 3355666666665443 34544432 2334555666665554311 346
Q ss_pred hhhhhHHHHHHHHHHH
Q 001069 585 FRYESVKCLVSIIRSM 600 (1166)
Q Consensus 585 l~~~aL~~L~~il~sl 600 (1166)
+|..|..+++.+.+.+
T Consensus 199 VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 199 VRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8899999988776543
No 12
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=38.82 E-value=2.8e+02 Score=29.29 Aligned_cols=154 Identities=11% Similarity=0.070 Sum_probs=96.5
Q ss_pred hHHHHHHHhhhhhccchhHHHHHHHHHHHhhcCCC-CCCCcccccccCCccCchhcHHHHHHhhcCCCcchHHHHHHHHH
Q 001069 18 GPSLDKIIKNAAWRKHAHLVSSCKSVLDKLDSISD-DPSQVSSSLFGLSQNDAGLVLHPIFLALDSAYPKVVEPALECAF 96 (1166)
Q Consensus 18 ~~~L~~i~~e~~~rK~~~Lr~A~e~al~~lk~~~~-~~~~~~~~~~~~~~~~~~~i~~Pf~lAC~tk~~kl~~~aLdclq 96 (1166)
...|.+.++ +.+|..++.++=.+|..|-..-. .. . .......++-++.-++..+.+.+...+-.+|.
T Consensus 62 ~~~L~~~l~---~D~n~~v~~~A~~al~~la~~l~~~~------f---~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~ 129 (249)
T 2qk1_A 62 LGIYGHIIQ---KDANIQAVALAAQSVELICDKLKTPG------F---SKDYVSLVFTPLLDRTKEKKPSVIEAIRKALL 129 (249)
T ss_dssp HHHHHHHHH---HCSCHHHHHHHHHHHHHHHHHHCTTT------S---CHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhc---cCCCHHHHHHHHHHHHHHHHhccccc------c---cHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 445555553 35788998888888888764322 11 1 00124456777777778888999999999999
Q ss_pred HHHhcCCCCCCCCCCCCCCCCCCCCCCCcccchHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHhhcCCcc---c--ch-
Q 001069 97 KLFSLGLARGEIEGESDNTNTTSTTNTNQKNFNIIYKLIEAICKVCGIGEEPIELSVLRVLLSAVRSPCLL---I--RG- 170 (1166)
Q Consensus 97 KLIs~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lid~iie~Ic~c~~~~de~VqLqILk~Llt~v~s~~~~---v--Hg- 170 (1166)
.++.+ +.+... ..-++.+++.|..+..+....|+.+++++|-.++...... + |=
T Consensus 130 ~i~~~--~~~~~~------------------~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~ 189 (249)
T 2qk1_A 130 TICKY--YDPLAS------------------SGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLK 189 (249)
T ss_dssp HHHHH--SCTTCT------------------TCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHT
T ss_pred HHHHH--cccccc------------------CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHH
Confidence 98875 222110 0003456666666656666788999999998888765421 1 11
Q ss_pred HHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHH
Q 001069 171 DCLLLIVRTCYNVYLGGSSGTNQICAKSVLAQIMVIV 207 (1166)
Q Consensus 171 ~~Ll~avrtCynI~l~Sk~~~nq~tA~ATLtQmi~~V 207 (1166)
..+...+.-|. .-.++.+...|-.+|.-|...|
T Consensus 190 ~~iip~l~~~l----~D~~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 190 DEVVPIVIQIV----NDTQPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp TTHHHHHHHHH----TCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHh
Confidence 33444444444 3456778888888877776554
No 13
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=33.13 E-value=2.4e+02 Score=27.89 Aligned_cols=63 Identities=14% Similarity=0.085 Sum_probs=39.7
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCC---CCCchhHHHHHHHHHHHHh
Q 001069 469 ALSVMAVFQLQCSIFMSLLSKYRSGLKAEI--GIFFPMLVLRVLENV---LQPSFVQKMTVLNLLEKIS 532 (1166)
Q Consensus 469 ~s~~~~vf~~slrif~~L~~~~r~~LK~Ei--Evfl~~lil~iLe~~---~~~~~~qk~l~LE~l~~l~ 532 (1166)
.+.++.+--++|.++=.++.+...++..|+ .-|+..++ +++.+. ..++..-|.-+|+++..+.
T Consensus 58 ~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~-kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 58 QSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELI-KVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHH-HHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHH-HHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 345666666667777777777666666665 45888875 555432 1234455666788887765
No 14
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=32.82 E-value=2.6e+02 Score=27.41 Aligned_cols=70 Identities=13% Similarity=0.057 Sum_probs=47.2
Q ss_pred HHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCC---CCCchhHHHHHHHHHHHHh
Q 001069 462 LSLLKNSALSVMAVFQLQCSIFMSLLSKYRSGLKAEI--GIFFPMLVLRVLENV---LQPSFVQKMTVLNLLEKIS 532 (1166)
Q Consensus 462 ~~Llrn~~s~~~~vf~~slrif~~L~~~~r~~LK~Ei--Evfl~~lil~iLe~~---~~~~~~qk~l~LE~l~~l~ 532 (1166)
.+|-|-+.+.++.+--++|.++=.++.+...++..|+ .-|+..++ +++... ..++..-|.-+|+++..+.
T Consensus 41 rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~-kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 41 WLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELI-KVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHH-HTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH-HHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3344444566788888888888888988877777777 57888875 666532 1223445566788887665
No 15
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=27.76 E-value=4.3e+02 Score=26.51 Aligned_cols=69 Identities=14% Similarity=0.066 Sum_probs=45.7
Q ss_pred HHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCC---CCCchhHHHHHHHHHHHHh
Q 001069 463 SLLKNSALSVMAVFQLQCSIFMSLLSKYRSGLKAEI--GIFFPMLVLRVLENV---LQPSFVQKMTVLNLLEKIS 532 (1166)
Q Consensus 463 ~Llrn~~s~~~~vf~~slrif~~L~~~~r~~LK~Ei--Evfl~~lil~iLe~~---~~~~~~qk~l~LE~l~~l~ 532 (1166)
+|.+-+.+.++.+--++|.++=.++.+...++..|+ .-|+..++ +++... +..+..-|.-+|+++..+.
T Consensus 54 al~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~-kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 54 LLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELI-KVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHH-HHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH-HHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 344444556777777888888888888777777776 46788875 555432 1233445666788888766
No 16
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=26.55 E-value=4.9e+02 Score=28.98 Aligned_cols=180 Identities=12% Similarity=0.127 Sum_probs=108.1
Q ss_pred hhhhhHHHHHHHHHhcccCC----CCCCC-Ccchhhhh-hhHHHHHHHHHHHHcCCccccCcHHHHHHHHHHHHHHHHHh
Q 001069 394 KIREDGFLLFKNICKLSMKF----SSQEN-PDDLILLR-GKILSLELLKVVTDNGGPVWLSNARFLIAIKQFLCLSLLKN 467 (1166)
Q Consensus 394 ~~~~Da~lvF~~LC~Ls~~~----~~~~~-~~d~~~lr-sk~l~LeLi~~iLe~~~~~f~~~~~l~~lik~~Lc~~Llrn 467 (1166)
..-.|-+.+.+..+.+.... .+... ......|| .|.=-|.||++.++...+. ..+...+.|-|+-.
T Consensus 6 ~iy~dml~lY~~~S~~Is~~va~~G~~~~k~~~vr~lR~vKkeiLkLiet~i~~~~d~--------~~v~~~~ippLl~~ 77 (321)
T 1w9c_A 6 RIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDP--------QMVAENFVPPLLDA 77 (321)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHCSGGGGSHHHHHHHHHHHHHHHHHHHHHTTCSCH--------HHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHHH
Confidence 34567777778777764221 11110 01123344 4677899999999876432 23334444444421
Q ss_pred ccc---CchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCchhHHHHHHHHHHHHhcC-hhHH
Q 001069 468 SAL---SVMAVF--QLQCSIFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVL---QPSFVQKMTVLNLLEKISQD-SQII 538 (1166)
Q Consensus 468 ~~s---~~~~vf--~~slrif~~L~~~~r~~LK~EiEvfl~~lil~iLe~~~---~~~~~qk~l~LE~l~~l~~~-p~~l 538 (1166)
... ...|-. +-.+.++.+++.+++..+.-++..+|..++...|+.-+ ..-.+||.-..+.|+.+... +..+
T Consensus 78 VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al 157 (321)
T 1w9c_A 78 VLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAF 157 (321)
T ss_dssp HHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHH
Confidence 110 011111 23467788889999999999999999999887776432 22348998777777777642 3232
Q ss_pred HHHhHhcCCCCCCccHHHHHHHHHHhhccCCCCCCCCCCCchhhHHhhhhhHHHHHHHHHHHHH
Q 001069 539 VDVFVNYDCDVDSPNIFERIVNGLLKTALGPPPGSTTSLSPAQDIAFRYESVKCLVSIIRSMGT 602 (1166)
Q Consensus 539 ~ely~NYDCd~~~~nIfe~li~~Lsk~a~~~~~~~~~~~~~~q~~~l~~~aL~~L~~il~sl~~ 602 (1166)
..+ ..+.|..++..+..... .+ +..+...||.++..+++.+..
T Consensus 158 ~~l---------p~~~fklvidsiiWa~k-H~-----------~r~V~e~gL~il~~ll~n~~~ 200 (321)
T 1w9c_A 158 LAI---------PPTQFKLVLDSIIWAFK-HT-----------MRNVADTGLQILFTLLQNVAQ 200 (321)
T ss_dssp HHS---------CHHHHHHHHHHHHHHTT-CS-----------SHHHHHHHHHHHHHHHHHHHH
T ss_pred HcC---------CHHHHHHHHHHHHHHcC-CC-----------CchHHHHHHHHHHHHHHHHhc
Confidence 221 46788888888875443 21 234556788888888888753
No 17
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=26.51 E-value=4.8e+02 Score=30.98 Aligned_cols=154 Identities=15% Similarity=0.066 Sum_probs=0.0
Q ss_pred hhHHHHHHHhhhhhccchhHHHHHHHHHHHhhcCCCCCCCcccccccCCccCchhcHHHHHHhhcCCCcchHHHHHHHHH
Q 001069 17 VGPSLDKIIKNAAWRKHAHLVSSCKSVLDKLDSISDDPSQVSSSLFGLSQNDAGLVLHPIFLALDSAYPKVVEPALECAF 96 (1166)
Q Consensus 17 l~~~L~~i~~e~~~rK~~~Lr~A~e~al~~lk~~~~~~~~~~~~~~~~~~~~~~~i~~Pf~lAC~tk~~kl~~~aLdclq 96 (1166)
|...+.+++.+ ++|.+|+++=.++..+-...+.. .....++..+.-+...+++.++..|+.+|.
T Consensus 122 l~~~l~~~L~d----~~~~VRk~A~~al~~i~~~~p~~------------~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~ 185 (591)
T 2vgl_B 122 LCEPLRKCLKD----EDPYVRKTAAVCVAKLHDINAQM------------VEDQGFLDSLRDLIADSNPMVVANAVAALS 185 (591)
T ss_dssp HHHHHHHHSSC----SCHHHHHHHHHHHHHHHHSSCCC------------HHHHHHHHHHHHTTSCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC----CChHHHHHHHHHHHHHHhhChhh------------cccccHHHHHHHHhCCCChhHHHHHHHHHH
Q ss_pred HHHhcCC------------------------------------CCCCCCCCCCCCCCCCCCCCCcccchHHHHHHHHHHh
Q 001069 97 KLFSLGL------------------------------------ARGEIEGESDNTNTTSTTNTNQKNFNIIYKLIEAICK 140 (1166)
Q Consensus 97 KLIs~~~------------------------------------l~~~~~~~~~~~~~~~~~~~~~~~~~Lid~iie~Ic~ 140 (1166)
.+...+. +.+. ..+....+++.+..
T Consensus 186 ~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~-------------------~~~~~~~~l~~l~~ 246 (591)
T 2vgl_B 186 EISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK-------------------DDREAQSICERVTP 246 (591)
T ss_dssp HHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC-------------------SHHHHHHHHHHHTT
T ss_pred HHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC-------------------ChHHHHHHHHHHHH
Q ss_pred hcCCCCCcchhHHHHHHHHHhhcC-CcccchHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHH
Q 001069 141 VCGIGEEPIELSVLRVLLSAVRSP-CLLIRGDCLLLIVRTCYNVYLGGSSGTNQICAKSVLAQIMVI 206 (1166)
Q Consensus 141 c~~~~de~VqLqILk~Llt~v~s~-~~~vHg~~Ll~avrtCynI~l~Sk~~~nq~tA~ATLtQmi~~ 206 (1166)
|..+.+..|.+..++++..+.... +..-.=..+...+..+. +++.+.++.++-+|=.+|..++..
T Consensus 247 ~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L-~~L~~~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 247 RLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPL-VTLLSGEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp CSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHH-HHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH-HHHhcCCccHHHHHHHHHHHHHHh
No 18
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=24.53 E-value=2e+02 Score=28.79 Aligned_cols=63 Identities=13% Similarity=0.019 Sum_probs=41.2
Q ss_pred hcccCchhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHh
Q 001069 467 NSALSVMAVFQLQCSIFMSLLSKYRSGLKAEIG--IFFPMLVLRVLENVLQPSFVQKMTVLNLLEKIS 532 (1166)
Q Consensus 467 n~~s~~~~vf~~slrif~~L~~~~r~~LK~EiE--vfl~~lil~iLe~~~~~~~~qk~l~LE~l~~l~ 532 (1166)
-+.+.++.+--++|.++=.++.+...++..|+. -|+..++ +++... ....-|.-+|+++..+.
T Consensus 60 rl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~-~l~~~~--~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 60 RVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVR-AVIKNK--AHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHH-HHHHTT--CCHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH-HHHccC--CCHHHHHHHHHHHHHHH
Confidence 334456666667888888888887777777774 4888875 666543 23344555677776554
No 19
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=20.52 E-value=2.8e+02 Score=34.48 Aligned_cols=95 Identities=17% Similarity=0.106 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHcCCccccCcHHHHHHH-HHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001069 428 KILSLELLKVVTDNGGPVWLSNARFLIAI-KQFLCLSLLKNSALSVMAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPMLV 506 (1166)
Q Consensus 428 k~l~LeLi~~iLe~~~~~f~~~~~l~~li-k~~Lc~~Llrn~~s~~~~vf~~slrif~~L~~~~r~~LK~EiEvfl~~li 506 (1166)
+.-+|++|..+.+.-|.-|.. .+ ...+++.|++.+..+.+.+-+.++.++..+...+..+++.=++.|+..++
T Consensus 603 ~~~~l~~l~~l~~~l~~~~~~------~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~ 676 (852)
T 4fdd_A 603 MIVALDLLSGLAEGLGGNIEQ------LVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILG 676 (852)
T ss_dssp HHHHHHHHHHHHHHHGGGGHH------HHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhHHH------HhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 456677777776665544322 22 12456777777666667777778888888888887777776677777664
Q ss_pred HHHhcCCCCCchhHHHHHHHHHHHHh
Q 001069 507 LRVLENVLQPSFVQKMTVLNLLEKIS 532 (1166)
Q Consensus 507 l~iLe~~~~~~~~qk~l~LE~l~~l~ 532 (1166)
..++.. .+..|..+...+..++
T Consensus 677 -~~l~~~---~~~v~~~a~~alg~i~ 698 (852)
T 4fdd_A 677 -TNLNPE---FISVCNNATWAIGEIS 698 (852)
T ss_dssp -HTCCTT---SHHHHHHHHHHHHHHH
T ss_pred -HHcCcc---chHHHHHHHHHHHHHH
Confidence 555332 3455666777777666
No 20
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=20.22 E-value=3.4e+02 Score=26.82 Aligned_cols=63 Identities=13% Similarity=0.195 Sum_probs=41.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhc
Q 001069 471 SVMAVFQLQCSIFMSLLSKYRSGLKAEI--GIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQ 533 (1166)
Q Consensus 471 ~~~~vf~~slrif~~L~~~~r~~LK~Ei--Evfl~~lil~iLe~~~~~~~~qk~l~LE~l~~l~~ 533 (1166)
.++.+--++|.++=.++.+...++..|+ +-|+..++.+++.+..+++..-|.-+|+++..+..
T Consensus 66 ~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 66 KNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 4566666778888888888777777666 34888833366644333444456667888887764
No 21
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=20.07 E-value=7.1e+02 Score=30.76 Aligned_cols=123 Identities=11% Similarity=0.038 Sum_probs=78.7
Q ss_pred hcHHHHHHhhcCCCcchHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCcccchHHHHHHHHHHhhcCCCCCcch
Q 001069 71 LVLHPIFLALDSAYPKVVEPALECAFKLFSLGLARGEIEGESDNTNTTSTTNTNQKNFNIIYKLIEAICKVCGIGEEPIE 150 (1166)
Q Consensus 71 ~i~~Pf~lAC~tk~~kl~~~aLdclqKLIs~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lid~iie~Ic~c~~~~de~Vq 150 (1166)
.++..+.-.+.+.++.+...|+.||.++...- +..... . .....++.++..+..|....+..|.
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~--~~~~~~--~------------~~~~~~~~il~~l~~~l~~~~~~vR 191 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDS--AEILDS--D------------VLDRPLNIMIPKFLQFFKHSSPKIR 191 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH--TTHHHH--C------------SSSSCHHHHHHHHTTTTTCSSHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh--HHHhch--h------------hhcchHHHHHHHHHHHhcCCCHHHH
Confidence 46777777888889999999999999998642 111000 0 0112356778888888766678888
Q ss_pred hHHHHHHHHHhhcCCcccchHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHhh
Q 001069 151 LSVLRVLLSAVRSPCLLIRGDCLLLIVRTCYNVYLGGSSGTNQICAKSVLAQIMVIVFTRV 211 (1166)
Q Consensus 151 LqILk~Llt~v~s~~~~vHg~~Ll~avrtCynI~l~Sk~~~nq~tA~ATLtQmi~~VF~Rv 211 (1166)
...+++|-.++.... .--...+-..++..+.. +...++.+...|-.+|.+++....+.+
T Consensus 192 ~~A~~aL~~~~~~~~-~~~~~~~~~~l~~l~~~-~~d~~~~vr~~a~~~L~~l~~~~~~~~ 250 (852)
T 4fdd_A 192 SHAVACVNQFIISRT-QALMLHIDSFIENLFAL-AGDEEPEVRKNVCRALVMLLEVRMDRL 250 (852)
T ss_dssp HHHHHHHHTTTTTTC-HHHHTSHHHHHHHHHHH-HTCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 888888865554321 11112223455555553 356778888888888888877554444
Done!