BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001070
(1165 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GUW|A Chain A, Crystal Structure Of The Tatd-Like Protein (Af1765) From
Archaeoglobus Fulgidus, Northeast Structural Genomics
Consortium Target Gr121
pdb|3GUW|B Chain B, Crystal Structure Of The Tatd-Like Protein (Af1765) From
Archaeoglobus Fulgidus, Northeast Structural Genomics
Consortium Target Gr121
pdb|3GUW|C Chain C, Crystal Structure Of The Tatd-Like Protein (Af1765) From
Archaeoglobus Fulgidus, Northeast Structural Genomics
Consortium Target Gr121
pdb|3GUW|D Chain D, Crystal Structure Of The Tatd-Like Protein (Af1765) From
Archaeoglobus Fulgidus, Northeast Structural Genomics
Consortium Target Gr121
Length = 261
Score = 37.0 bits (84), Expect = 0.059, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 554 SSSETTNIIGGKNEEEVVVNSDAGNAEVEVKVLDETRFTHDEFGSRGESQNLVSENREKY 613
S+ + I+ E +NSDAG +VE+ + E +E R E + + EN K+
Sbjct: 186 SAEDAARIVAEHGPERFXLNSDAGYRDVEITTVAEAAVKIEEAVGREEXEKVARENARKF 245
Query: 614 LR 615
LR
Sbjct: 246 LR 247
>pdb|2VXG|A Chain A, Crystal Structure Of The Conserved C-Terminal Region Of Ge-
1
pdb|2VXG|B Chain B, Crystal Structure Of The Conserved C-Terminal Region Of Ge-
1
Length = 139
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 3/127 (2%)
Query: 1032 LSRLVSDRKYEEAFTTALQRSDVSIVSWLCSQVDMHGLLSMXXXXXXXXXXXXXXXXXAC 1091
+ +L+ + +AF AL +D+ +V + D + + +
Sbjct: 7 IKQLLMAGQINKAFHQALLANDLGLVEFTLRHTDSNQAFAPEGCRLEQKVLLSLIQQISA 66
Query: 1092 DINKDTARKLAWLTDVAAAINPADPMIAVHARPIFEQVYQRLHH-QRSSPTISGAELSSI 1150
D+ K +L + AIN ADP+ HA + ++Y+ ++SP ++ S++
Sbjct: 67 DMTNHNELKQRYLNEALLAINMADPITREHAPKVLTELYRNCQQFIKNSP--KNSQFSNV 124
Query: 1151 RLLIHVI 1157
RLL+ I
Sbjct: 125 RLLMKAI 131
>pdb|1KFI|A Chain A, Crystal Structure Of The Exocytosis-Sensitive
Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
Paramecium
pdb|1KFI|B Chain B, Crystal Structure Of The Exocytosis-Sensitive
Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
Paramecium
pdb|1KFQ|A Chain A, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
Form
pdb|1KFQ|B Chain B, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
Form
Length = 572
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 933 FEQVDATFQKGMVEHTTATLQHFESTHSPLALVLRESVNSVS---SMAQTLSGEFVDGQR 989
+EQVD+ M+EH Q+FE + + V+ V S Q + F DG R
Sbjct: 452 YEQVDSAGANKMMEHLKTKFQYFEQLKQGNKADIYDYVDPVDQSVSKNQGVRFVFGDGSR 511
Query: 990 KLFDLAG 996
+F L+G
Sbjct: 512 IIFRLSG 518
>pdb|3QD6|R Chain R, Crystal Structure Of The Cd40 And Cd154 (Cd40l) Complex
pdb|3QD6|S Chain S, Crystal Structure Of The Cd40 And Cd154 (Cd40l) Complex
pdb|3QD6|T Chain T, Crystal Structure Of The Cd40 And Cd154 (Cd40l) Complex
pdb|3QD6|U Chain U, Crystal Structure Of The Cd40 And Cd154 (Cd40l) Complex
Length = 177
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 585 VLDETRFTHDEFGSRGESQNLVSENREKYL-RYQATDPRIGMAAKCAGTSA--ETCVAEE 641
V D T FT E GES+ L + NRE + +++ DP +G+ + GTS C EE
Sbjct: 28 VSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEE 87
Query: 642 A 642
Sbjct: 88 G 88
>pdb|3LYP|A Chain A, Structure Of Stringent Starvation Protein A Homolog From
Pseudomonas Fluorescens
pdb|3LYP|B Chain B, Structure Of Stringent Starvation Protein A Homolog From
Pseudomonas Fluorescens
Length = 215
Score = 31.6 bits (70), Expect = 3.0, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 4/40 (10%)
Query: 116 VAYDVDAVEEGREPTQQLEVNPITKYGSDPELLIGRQIAV 155
V+ ++ +VE GR+P + +EVNP YGS P L+ R +A+
Sbjct: 32 VSAEIISVEAGRQPPKLIEVNP---YGSLPT-LVDRDLAL 67
>pdb|3LN6|A Chain A, Crystal Structure Of A Bifunctional Glutathione Synthetase
From Streptococcus Agalactiae
Length = 750
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 566 NEEEVVVNSDAGNAEVEVKVLDETRF---THDEFGSRGESQNLVSENREKYLRYQATDPR 622
+++ +V N V K+LDE F DEF R E+ N S+ ++K + +
Sbjct: 472 SKDNYIVPLAMANKVVTKKILDEKHFPTPFGDEFTDRKEALNYFSQIQDKPIVVKPKSTN 531
Query: 623 IGMAAKCAGTSAETCVAEEAQEV 645
G+ TSA E+A ++
Sbjct: 532 FGLGISIFKTSANLASYEKAIDI 554
>pdb|3SV0|A Chain A, Crystal Structure Of Casein Kinase-1 Like Protein In Plant
Length = 483
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 357 SLNLFQCLPPPAESGGLERPDSSVSNDANGSRLSEFLFPSSTSKPSFSETTGAVRYPQLS 416
S++ + PP A G L + + V NDA+ S+ P ++ ++G+ R P +S
Sbjct: 340 SMDRRRAPPPIASVGTLAKQKAPVGNDASFSKE-----PVISASNFLGRSSGSSRRPAVS 394
Query: 417 TSHEAT---TSQENLTSKTESQPLSLARTT 443
+S + TS+ + T T++ P + RT+
Sbjct: 395 SSRDVMPIDTSEPSRTRATDASPGAFRRTS 424
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,017,205
Number of Sequences: 62578
Number of extensions: 1089933
Number of successful extensions: 1929
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1927
Number of HSP's gapped (non-prelim): 10
length of query: 1165
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1056
effective length of database: 8,152,335
effective search space: 8608865760
effective search space used: 8608865760
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)