Query 001070
Match_columns 1165
No_of_seqs 226 out of 259
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 15:00:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001070.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001070hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1916 Nuclear protein, conta 100.0 1E-153 2E-158 1337.4 51.0 1077 6-1165 5-1283(1283)
2 KOG1916 Nuclear protein, conta 99.7 1.5E-14 3.2E-19 173.3 31.1 140 198-361 274-453 (1283)
3 KOG0271 Notchless-like WD40 re 99.5 1.6E-13 3.4E-18 153.8 10.8 118 107-244 126-277 (480)
4 KOG0272 U4/U6 small nuclear ri 99.4 1.4E-12 3E-17 147.8 9.4 118 156-300 272-412 (459)
5 KOG0266 WD40 repeat-containing 99.3 1.2E-11 2.7E-16 144.7 12.5 126 153-303 211-363 (456)
6 KOG0275 Conserved WD40 repeat- 99.3 1E-11 2.2E-16 137.1 8.3 193 84-306 156-423 (508)
7 KOG0295 WD40 repeat-containing 99.2 3.5E-11 7.6E-16 134.8 12.2 116 149-291 237-392 (406)
8 KOG0285 Pleiotropic regulator 99.2 4.8E-11 1E-15 133.5 10.4 151 151-337 155-372 (460)
9 KOG0266 WD40 repeat-containing 99.2 1.9E-10 4.2E-15 134.8 14.7 129 153-309 167-321 (456)
10 KOG0263 Transcription initiati 99.2 5.7E-11 1.2E-15 142.4 9.9 131 140-298 447-642 (707)
11 KOG0279 G protein beta subunit 99.1 6.5E-10 1.4E-14 121.7 14.5 175 153-342 71-298 (315)
12 KOG0291 WD40-repeat-containing 99.1 2.1E-10 4.6E-15 136.9 11.1 143 138-307 332-553 (893)
13 KOG0271 Notchless-like WD40 re 99.1 2.8E-10 6E-15 128.3 9.3 87 188-303 391-477 (480)
14 KOG0295 WD40 repeat-containing 99.1 9.8E-10 2.1E-14 123.4 12.3 153 155-329 203-391 (406)
15 KOG0276 Vesicle coat complex C 99.0 3.7E-10 8E-15 132.8 8.0 120 143-291 97-243 (794)
16 PTZ00421 coronin; Provisional 99.0 5.9E-09 1.3E-13 124.0 18.1 112 156-293 87-229 (493)
17 KOG0263 Transcription initiati 99.0 7E-10 1.5E-14 133.3 9.5 86 153-245 543-651 (707)
18 PTZ00421 coronin; Provisional 99.0 6.4E-09 1.4E-13 123.7 15.8 132 153-307 131-291 (493)
19 KOG0316 Conserved WD40 repeat- 99.0 4.3E-09 9.3E-14 113.4 12.4 147 153-337 25-195 (307)
20 KOG0279 G protein beta subunit 99.0 3.3E-09 7.2E-14 116.2 11.5 144 132-305 4-179 (315)
21 KOG0274 Cdc4 and related F-box 99.0 7.2E-10 1.6E-14 132.8 6.9 119 150-297 294-433 (537)
22 KOG0281 Beta-TrCP (transducin 99.0 6E-10 1.3E-14 124.4 5.6 105 149-265 317-447 (499)
23 KOG0319 WD40-repeat-containing 98.9 2.5E-09 5.4E-14 127.9 8.9 180 153-359 471-703 (775)
24 PTZ00420 coronin; Provisional 98.9 2.9E-08 6.2E-13 119.9 17.6 154 156-335 136-316 (568)
25 KOG0274 Cdc4 and related F-box 98.9 6.6E-09 1.4E-13 124.7 11.6 93 153-266 255-370 (537)
26 KOG0281 Beta-TrCP (transducin 98.9 1.3E-09 2.8E-14 121.7 5.2 186 156-370 206-448 (499)
27 PTZ00420 coronin; Provisional 98.9 2.6E-08 5.7E-13 120.3 16.5 128 157-307 87-249 (568)
28 PLN00181 protein SPA1-RELATED; 98.9 3E-08 6.6E-13 123.4 17.0 128 156-306 587-738 (793)
29 KOG0272 U4/U6 small nuclear ri 98.9 3.9E-09 8.4E-14 120.4 8.2 151 107-297 272-452 (459)
30 cd00200 WD40 WD40 domain, foun 98.8 1.1E-07 2.3E-12 96.0 16.5 159 156-350 20-208 (289)
31 KOG0293 WD40 repeat-containing 98.8 1.3E-08 2.8E-13 116.0 10.4 150 152-337 231-407 (519)
32 KOG0273 Beta-transducin family 98.8 2.4E-08 5.1E-13 115.3 12.5 120 157-305 371-522 (524)
33 cd00200 WD40 WD40 domain, foun 98.8 1.2E-07 2.6E-12 95.7 16.1 159 156-350 62-250 (289)
34 KOG0276 Vesicle coat complex C 98.8 1.2E-08 2.7E-13 120.3 9.6 121 156-302 66-211 (794)
35 PLN00181 protein SPA1-RELATED; 98.8 4.9E-08 1.1E-12 121.5 15.5 125 155-307 493-649 (793)
36 KOG0286 G-protein beta subunit 98.8 7.3E-08 1.6E-12 106.5 13.3 164 108-304 109-301 (343)
37 KOG0284 Polyadenylation factor 98.8 1.6E-08 3.5E-13 115.1 8.1 117 153-296 146-285 (464)
38 KOG0313 Microtubule binding pr 98.7 3.1E-08 6.8E-13 112.0 9.8 113 157-298 115-323 (423)
39 KOG0265 U5 snRNP-specific prot 98.7 4.5E-08 9.7E-13 108.4 10.7 155 134-303 36-243 (338)
40 KOG0286 G-protein beta subunit 98.7 5.2E-08 1.1E-12 107.6 10.4 110 153-288 105-242 (343)
41 KOG0315 G-protein beta subunit 98.7 1.2E-07 2.6E-12 103.1 12.4 168 107-306 51-245 (311)
42 KOG0973 Histone transcription 98.6 7.2E-08 1.6E-12 119.5 9.9 135 151-306 75-250 (942)
43 KOG0288 WD40 repeat protein Ti 98.6 1.8E-07 4E-12 106.8 12.0 118 156-297 230-453 (459)
44 KOG0283 WD40 repeat-containing 98.6 1.2E-07 2.7E-12 115.0 10.9 138 133-298 251-474 (712)
45 KOG0639 Transducin-like enhanc 98.6 4.6E-06 1E-10 97.3 22.7 235 85-348 409-703 (705)
46 KOG0273 Beta-transducin family 98.6 2.3E-07 5.1E-12 107.3 11.5 122 153-297 241-474 (524)
47 KOG0291 WD40-repeat-containing 98.6 4.2E-07 9.1E-12 109.5 13.4 131 153-309 313-469 (893)
48 KOG0289 mRNA splicing factor [ 98.6 3.3E-07 7.1E-12 105.3 12.0 94 188-310 371-464 (506)
49 KOG0294 WD40 repeat-containing 98.6 7.3E-07 1.6E-11 99.6 14.1 162 114-307 10-200 (362)
50 KOG0318 WD40 repeat stress pro 98.5 7.7E-07 1.7E-11 104.2 12.9 62 188-268 214-278 (603)
51 KOG0292 Vesicle coat complex C 98.5 5.7E-07 1.2E-11 109.7 12.1 132 151-295 55-226 (1202)
52 KOG0264 Nucleosome remodeling 98.5 5.2E-07 1.1E-11 104.0 11.0 165 112-307 146-348 (422)
53 TIGR03866 PQQ_ABC_repeats PQQ- 98.5 2.1E-06 4.6E-11 90.7 14.0 120 158-305 2-144 (300)
54 KOG0319 WD40-repeat-containing 98.5 7.9E-07 1.7E-11 107.1 11.7 135 135-296 401-568 (775)
55 KOG0305 Anaphase promoting com 98.4 2.1E-06 4.5E-11 101.9 14.0 171 107-298 228-454 (484)
56 KOG0645 WD40 repeat protein [G 98.4 3.7E-06 8E-11 92.6 14.5 168 104-303 23-224 (312)
57 KOG0310 Conserved WD40 repeat- 98.4 9E-07 2E-11 102.9 10.1 113 153-293 162-297 (487)
58 KOG0308 Conserved WD40 repeat- 98.4 5.2E-07 1.1E-11 107.5 8.2 130 154-300 34-195 (735)
59 KOG0299 U3 snoRNP-associated p 98.4 2E-06 4.2E-11 99.7 12.0 33 155-187 212-245 (479)
60 KOG0640 mRNA cleavage stimulat 98.4 6.5E-07 1.4E-11 99.7 7.9 101 150-268 219-348 (430)
61 KOG0310 Conserved WD40 repeat- 98.4 1.9E-06 4.2E-11 100.2 11.7 125 156-308 79-227 (487)
62 KOG0293 WD40 repeat-containing 98.4 6.9E-07 1.5E-11 102.3 7.5 87 151-243 401-513 (519)
63 KOG0284 Polyadenylation factor 98.3 8.5E-07 1.8E-11 101.4 7.6 127 153-306 188-337 (464)
64 KOG0315 G-protein beta subunit 98.3 2E-06 4.3E-11 93.9 9.6 144 156-337 9-179 (311)
65 KOG0300 WD40 repeat-containing 98.3 2.1E-06 4.6E-11 95.8 9.7 91 157-266 284-398 (481)
66 KOG1539 WD repeat protein [Gen 98.3 2.3E-06 5.1E-11 104.2 10.6 125 151-303 497-645 (910)
67 KOG0265 U5 snRNP-specific prot 98.3 4.4E-06 9.4E-11 93.1 11.0 119 157-302 186-334 (338)
68 KOG0296 Angio-associated migra 98.3 5.6E-06 1.2E-10 94.0 11.7 196 107-349 117-398 (399)
69 KOG0313 Microtubule binding pr 98.3 2.9E-06 6.2E-11 96.6 9.4 129 153-306 199-376 (423)
70 KOG0301 Phospholipase A2-activ 98.2 1.8E-06 3.8E-11 103.7 7.7 107 156-294 70-198 (745)
71 KOG0641 WD40 repeat protein [G 98.2 7.9E-06 1.7E-10 88.2 11.7 128 155-304 99-261 (350)
72 TIGR03866 PQQ_ABC_repeats PQQ- 98.2 5.1E-05 1.1E-09 80.3 17.2 128 153-308 38-189 (300)
73 KOG0640 mRNA cleavage stimulat 98.2 9.5E-06 2.1E-10 90.7 11.8 166 111-306 82-335 (430)
74 KOG0647 mRNA export protein (c 98.2 7.4E-06 1.6E-10 91.3 10.9 123 157-309 40-187 (347)
75 KOG0646 WD40 repeat protein [G 98.2 9.3E-06 2E-10 94.3 11.9 150 131-307 61-248 (476)
76 KOG0285 Pleiotropic regulator 98.2 2.6E-06 5.7E-11 96.4 6.5 135 145-309 228-392 (460)
77 KOG0308 Conserved WD40 repeat- 98.2 1.1E-05 2.4E-10 96.6 11.8 93 154-265 127-253 (735)
78 KOG0267 Microtubule severing p 98.1 2.1E-06 4.5E-11 103.4 5.6 83 156-245 81-186 (825)
79 KOG1034 Transcriptional repres 98.1 4.7E-06 1E-10 93.7 7.4 82 158-245 106-213 (385)
80 KOG1273 WD40 repeat protein [G 98.1 1.4E-05 3.1E-10 89.6 10.8 111 149-307 27-138 (405)
81 KOG0302 Ribosome Assembly prot 98.1 5.8E-06 1.2E-10 94.2 7.3 83 157-245 270-380 (440)
82 KOG0296 Angio-associated migra 98.1 1.9E-05 4E-10 89.9 11.2 127 140-296 186-389 (399)
83 KOG0269 WD40 repeat-containing 98.1 5E-06 1.1E-10 100.8 6.9 95 156-264 145-264 (839)
84 KOG0292 Vesicle coat complex C 98.1 1.7E-05 3.8E-10 97.2 11.0 130 138-294 2-154 (1202)
85 PRK11028 6-phosphogluconolacto 98.0 0.00017 3.8E-09 80.3 18.0 141 152-307 84-259 (330)
86 KOG1408 WD40 repeat protein [F 98.0 2.8E-05 6E-10 93.8 12.1 144 152-317 464-680 (1080)
87 KOG0289 mRNA splicing factor [ 98.0 1.5E-05 3.3E-10 92.1 9.6 117 153-293 355-494 (506)
88 KOG0306 WD40-repeat-containing 98.0 3.6E-05 7.8E-10 93.4 12.9 213 112-365 343-586 (888)
89 KOG0302 Ribosome Assembly prot 98.0 7E-05 1.5E-09 85.7 14.5 150 131-307 141-381 (440)
90 KOG0282 mRNA splicing factor [ 98.0 8.9E-06 1.9E-10 94.8 7.4 100 157-265 227-350 (503)
91 KOG1924 RhoA GTPase effector D 98.0 7.9E-06 1.7E-10 99.0 7.1 9 114-122 616-624 (1102)
92 KOG0306 WD40-repeat-containing 97.9 2E-05 4.3E-10 95.6 8.6 117 153-296 516-655 (888)
93 KOG0282 mRNA splicing factor [ 97.9 1.9E-05 4.2E-10 92.1 8.2 151 126-305 158-329 (503)
94 KOG0321 WD40 repeat-containing 97.9 3E-05 6.6E-10 92.8 10.0 129 159-306 114-301 (720)
95 KOG4283 Transcription-coupled 97.9 3.2E-05 6.9E-10 86.2 9.5 90 157-252 158-285 (397)
96 KOG0278 Serine/threonine kinas 97.9 2.1E-05 4.6E-10 86.1 7.7 94 156-262 154-310 (334)
97 KOG0644 Uncharacterized conser 97.9 1.3E-05 2.9E-10 97.7 6.4 84 149-243 187-300 (1113)
98 KOG0277 Peroxisomal targeting 97.9 1.3E-05 2.7E-10 88.0 5.2 53 188-246 215-268 (311)
99 KOG4283 Transcription-coupled 97.9 0.00012 2.6E-09 81.8 12.4 126 157-307 56-220 (397)
100 KOG0267 Microtubule severing p 97.9 1.3E-05 2.8E-10 96.9 5.1 80 157-243 124-226 (825)
101 KOG0301 Phospholipase A2-activ 97.9 0.0001 2.2E-09 89.1 12.3 122 153-307 147-289 (745)
102 KOG0772 Uncharacterized conser 97.9 6.4E-05 1.4E-09 88.4 10.4 170 159-365 283-499 (641)
103 KOG1445 Tumor-specific antigen 97.8 0.00012 2.6E-09 87.6 12.5 159 134-308 626-846 (1012)
104 KOG0649 WD40 repeat protein [G 97.8 5E-05 1.1E-09 83.0 8.5 139 107-267 71-247 (325)
105 KOG0270 WD40 repeat-containing 97.8 0.00011 2.3E-09 85.4 11.6 81 157-243 192-317 (463)
106 KOG0303 Actin-binding protein 97.8 0.00015 3.3E-09 83.4 12.5 168 133-328 59-312 (472)
107 KOG0643 Translation initiation 97.8 5.7E-05 1.2E-09 83.5 8.7 80 188-295 171-251 (327)
108 KOG0275 Conserved WD40 repeat- 97.8 0.00015 3.2E-09 81.6 11.6 134 153-310 271-471 (508)
109 KOG0277 Peroxisomal targeting 97.8 0.00027 5.9E-09 77.9 12.6 125 157-307 73-222 (311)
110 KOG0303 Actin-binding protein 97.7 9.6E-05 2.1E-09 84.9 9.2 133 133-297 25-195 (472)
111 KOG1332 Vesicle coat complex C 97.7 6.4E-05 1.4E-09 82.3 6.7 87 157-248 23-139 (299)
112 KOG0278 Serine/threonine kinas 97.7 8.2E-05 1.8E-09 81.7 7.4 117 155-296 27-205 (334)
113 KOG2139 WD40 repeat protein [G 97.7 0.00033 7.1E-09 80.1 12.0 152 147-307 98-312 (445)
114 KOG4328 WD40 protein [Function 97.7 0.0002 4.4E-09 83.5 10.5 137 146-305 183-398 (498)
115 KOG0288 WD40 repeat protein Ti 97.7 3.8E-05 8.3E-10 88.4 4.6 93 156-267 186-303 (459)
116 KOG1063 RNA polymerase II elon 97.6 0.00016 3.4E-09 87.5 9.3 137 159-299 71-291 (764)
117 KOG0645 WD40 repeat protein [G 97.6 0.00037 8.1E-09 77.3 11.1 132 150-306 15-180 (312)
118 KOG1332 Vesicle coat complex C 97.6 0.00025 5.5E-09 77.8 9.5 125 157-302 116-282 (299)
119 KOG1407 WD40 repeat protein [F 97.6 0.0008 1.7E-08 74.5 13.0 136 153-296 26-210 (313)
120 PF08662 eIF2A: Eukaryotic tra 97.6 0.00028 6.1E-09 74.6 9.0 119 108-243 32-179 (194)
121 KOG1274 WD40 repeat protein [G 97.5 0.00028 6E-09 87.5 10.1 135 188-350 120-263 (933)
122 KOG0264 Nucleosome remodeling 97.5 0.00043 9.4E-09 80.6 10.9 136 157-304 240-402 (422)
123 KOG1445 Tumor-specific antigen 97.5 0.00036 7.8E-09 83.7 10.3 172 160-361 143-360 (1012)
124 KOG0646 WD40 repeat protein [G 97.5 0.00015 3.3E-09 84.5 7.1 95 152-264 130-316 (476)
125 KOG0973 Histone transcription 97.5 0.00029 6.3E-09 88.5 9.9 121 156-298 24-152 (942)
126 KOG4378 Nuclear protein COP1 [ 97.5 0.00031 6.8E-09 82.5 9.3 124 157-307 91-281 (673)
127 KOG0270 WD40 repeat-containing 97.5 0.00043 9.3E-09 80.6 10.3 128 107-247 191-408 (463)
128 KOG0299 U3 snoRNP-associated p 97.5 0.00018 3.9E-09 83.9 6.8 134 138-298 135-309 (479)
129 KOG1188 WD40 repeat protein [G 97.5 0.00088 1.9E-08 76.2 11.8 83 157-244 84-197 (376)
130 KOG1009 Chromatin assembly com 97.5 0.0006 1.3E-08 78.8 10.6 160 153-353 21-231 (434)
131 KOG0294 WD40 repeat-containing 97.4 0.00022 4.9E-09 80.3 6.9 53 188-245 231-283 (362)
132 KOG2048 WD40 repeat protein [G 97.4 0.00073 1.6E-08 81.9 11.4 101 227-336 337-441 (691)
133 PRK11028 6-phosphogluconolacto 97.4 0.0023 4.9E-08 71.5 14.3 132 155-308 135-306 (330)
134 KOG1446 Histone H3 (Lys4) meth 97.4 0.0014 2.9E-08 74.0 12.0 122 154-304 23-170 (311)
135 KOG0643 Translation initiation 97.4 0.00085 1.8E-08 74.5 9.9 79 188-294 34-112 (327)
136 KOG0321 WD40 repeat-containing 97.4 0.00028 6E-09 84.9 6.7 104 134-243 36-175 (720)
137 KOG0316 Conserved WD40 repeat- 97.4 0.0005 1.1E-08 75.3 7.9 110 156-296 70-204 (307)
138 KOG1007 WD repeat protein TSSC 97.3 0.00045 9.8E-09 77.2 7.6 84 148-245 182-291 (370)
139 KOG0268 Sof1-like rRNA process 97.3 0.00048 1E-08 78.8 7.7 121 160-307 82-260 (433)
140 KOG1446 Histone H3 (Lys4) meth 97.3 0.0032 7E-08 71.1 13.8 196 107-348 25-261 (311)
141 KOG0305 Anaphase promoting com 97.3 0.00055 1.2E-08 81.8 8.3 125 155-307 227-374 (484)
142 KOG0639 Transducin-like enhanc 97.3 0.0005 1.1E-08 80.9 7.5 125 153-304 517-704 (705)
143 KOG0772 Uncharacterized conser 97.3 0.0029 6.2E-08 75.1 13.6 184 141-346 157-442 (641)
144 KOG0269 WD40 repeat-containing 97.3 0.00037 8E-09 85.3 6.6 114 156-294 99-239 (839)
145 COG2319 FOG: WD40 repeat [Gene 97.2 0.0037 8.1E-08 65.6 12.7 124 156-308 121-273 (466)
146 KOG0322 G-protein beta subunit 97.2 0.00045 9.7E-09 76.5 5.7 48 188-242 275-322 (323)
147 KOG2096 WD40 repeat protein [G 97.2 0.0024 5.2E-08 72.4 11.4 138 150-310 91-262 (420)
148 KOG1034 Transcriptional repres 97.2 0.00082 1.8E-08 76.2 7.8 83 188-293 117-199 (385)
149 KOG0307 Vesicle coat complex C 97.2 0.0012 2.7E-08 83.6 9.8 168 112-307 89-285 (1049)
150 KOG0300 WD40 repeat-containing 97.1 0.0019 4.2E-08 72.9 9.6 118 114-251 295-436 (481)
151 KOG1408 WD40 repeat protein [F 97.1 0.00059 1.3E-08 82.9 5.9 85 153-244 602-714 (1080)
152 KOG0641 WD40 repeat protein [G 97.0 0.0019 4.1E-08 70.3 7.4 118 107-245 151-305 (350)
153 KOG0771 Prolactin regulatory e 96.9 0.0045 9.8E-08 72.0 10.3 133 149-297 144-303 (398)
154 COG2319 FOG: WD40 repeat [Gene 96.8 0.014 3.1E-07 61.3 12.8 120 156-301 76-224 (466)
155 KOG1036 Mitotic spindle checkp 96.8 0.0023 4.9E-08 72.2 6.9 116 105-244 23-164 (323)
156 KOG0650 WD40 repeat nucleolar 96.8 0.00091 2E-08 80.2 3.9 37 151-187 404-445 (733)
157 PRK01742 tolB translocation pr 96.8 0.018 3.9E-07 67.7 14.1 125 153-308 211-363 (429)
158 KOG1274 WD40 repeat protein [G 96.8 0.0068 1.5E-07 75.8 11.0 132 150-306 99-262 (933)
159 KOG4328 WD40 protein [Function 96.8 0.0074 1.6E-07 71.0 10.6 123 163-304 297-448 (498)
160 PRK04922 tolB translocation pr 96.7 0.024 5.2E-07 66.6 15.0 128 153-306 211-368 (433)
161 KOG0649 WD40 repeat protein [G 96.7 0.014 3E-07 64.6 11.9 95 188-303 138-234 (325)
162 KOG4547 WD40 repeat-containing 96.7 0.0079 1.7E-07 72.3 10.7 132 182-336 160-292 (541)
163 KOG2096 WD40 repeat protein [G 96.7 0.011 2.3E-07 67.3 10.9 171 116-306 158-362 (420)
164 KOG0642 Cell-cycle nuclear pro 96.6 0.0022 4.8E-08 76.6 5.5 54 132-187 331-397 (577)
165 KOG0974 WD-repeat protein WDR6 96.6 0.0017 3.7E-08 81.6 4.6 82 156-244 186-289 (967)
166 PRK01742 tolB translocation pr 96.6 0.016 3.6E-07 68.0 12.1 115 165-307 182-325 (429)
167 PF00400 WD40: WD domain, G-be 96.6 0.0024 5.1E-08 49.6 3.5 39 196-241 1-39 (39)
168 KOG2048 WD40 repeat protein [G 96.5 0.013 2.9E-07 71.4 11.2 129 152-307 115-277 (691)
169 KOG2111 Uncharacterized conser 96.5 0.0049 1.1E-07 69.9 7.0 84 156-245 147-258 (346)
170 KOG1036 Mitotic spindle checkp 96.5 0.021 4.6E-07 64.7 11.8 142 155-327 23-187 (323)
171 KOG2055 WD40 repeat protein [G 96.5 0.012 2.6E-07 69.4 10.0 163 114-306 236-467 (514)
172 PRK05137 tolB translocation pr 96.4 0.039 8.4E-07 64.9 14.1 126 153-306 209-366 (435)
173 KOG1517 Guanine nucleotide bin 96.4 0.012 2.5E-07 74.7 9.7 127 157-304 1178-1333(1387)
174 KOG3914 WD repeat protein WDR4 96.4 0.005 1.1E-07 71.3 6.2 76 153-268 159-236 (390)
175 PF10282 Lactonase: Lactonase, 96.4 0.21 4.5E-06 57.3 19.0 177 153-349 92-322 (345)
176 PF08662 eIF2A: Eukaryotic tra 96.4 0.048 1E-06 57.9 13.0 117 188-343 41-159 (194)
177 TIGR02800 propeller_TolB tol-p 96.3 0.034 7.3E-07 63.8 12.6 127 153-307 197-355 (417)
178 KOG0283 WD40 repeat-containing 96.3 0.019 4.1E-07 71.3 10.9 129 155-307 420-577 (712)
179 KOG2110 Uncharacterized conser 96.2 0.11 2.3E-06 60.5 15.3 130 153-309 91-251 (391)
180 KOG0647 mRNA export protein (c 96.2 0.013 2.9E-07 66.2 7.8 82 154-245 81-186 (347)
181 PRK03629 tolB translocation pr 96.2 0.058 1.2E-06 63.7 13.6 130 152-307 205-364 (429)
182 KOG4227 WD40 repeat protein [G 96.2 0.013 2.8E-07 67.9 7.7 88 152-244 63-226 (609)
183 KOG2321 WD40 repeat protein [G 96.1 0.016 3.5E-07 69.8 8.5 128 153-307 181-347 (703)
184 KOG0318 WD40 repeat stress pro 96.1 0.047 1E-06 65.4 11.9 32 156-187 331-364 (603)
185 KOG2445 Nuclear pore complex c 96.0 0.062 1.3E-06 61.2 12.2 151 157-348 25-175 (361)
186 KOG1524 WD40 repeat-containing 96.0 0.034 7.3E-07 66.7 10.2 113 153-293 112-245 (737)
187 KOG3881 Uncharacterized conser 95.9 0.026 5.7E-07 65.6 9.0 157 103-298 105-270 (412)
188 PRK02889 tolB translocation pr 95.9 0.067 1.5E-06 63.0 12.7 130 152-307 202-361 (427)
189 KOG0268 Sof1-like rRNA process 95.8 0.012 2.6E-07 67.8 5.7 162 111-298 144-338 (433)
190 KOG1272 WD40-repeat-containing 95.8 0.021 4.5E-07 67.6 7.6 76 160-242 224-322 (545)
191 KOG1063 RNA polymerase II elon 95.8 0.096 2.1E-06 64.5 13.3 112 156-304 205-344 (764)
192 PRK04922 tolB translocation pr 95.8 0.088 1.9E-06 62.0 12.8 115 167-307 184-325 (433)
193 KOG1273 WD40 repeat protein [G 95.8 0.051 1.1E-06 62.0 10.1 53 112-176 44-96 (405)
194 KOG0290 Conserved WD40 repeat- 95.7 0.025 5.4E-07 63.9 7.3 52 188-245 268-320 (364)
195 KOG2394 WD40 protein DMR-N9 [G 95.7 0.041 9E-07 66.0 9.3 62 153-215 298-382 (636)
196 COG2706 3-carboxymuconate cycl 95.6 0.48 1E-05 55.0 17.3 177 107-310 50-278 (346)
197 PRK04792 tolB translocation pr 95.5 0.28 6.1E-06 58.4 15.7 129 152-306 224-382 (448)
198 KOG0650 WD40 repeat nucleolar 95.5 0.041 8.9E-07 66.7 8.4 82 199-308 393-474 (733)
199 PRK03629 tolB translocation pr 95.4 0.16 3.5E-06 60.0 13.1 113 167-307 179-320 (429)
200 KOG2919 Guanine nucleotide-bin 95.1 0.056 1.2E-06 61.9 7.8 166 107-306 169-369 (406)
201 TIGR02800 propeller_TolB tol-p 95.1 0.22 4.9E-06 57.2 12.7 114 166-307 169-311 (417)
202 KOG2110 Uncharacterized conser 95.0 0.055 1.2E-06 62.7 7.3 83 156-246 140-251 (391)
203 KOG1407 WD40 repeat protein [F 94.9 0.098 2.1E-06 58.6 8.8 86 188-299 44-130 (313)
204 KOG2314 Translation initiation 94.9 0.17 3.6E-06 61.3 11.0 113 218-359 454-583 (698)
205 PRK05137 tolB translocation pr 94.7 0.22 4.7E-06 58.7 11.4 111 167-306 182-322 (435)
206 KOG0644 Uncharacterized conser 94.6 0.069 1.5E-06 66.8 7.2 42 153-194 238-300 (1113)
207 PF10282 Lactonase: Lactonase, 94.6 0.84 1.8E-05 52.4 15.5 150 154-328 152-341 (345)
208 KOG0642 Cell-cycle nuclear pro 94.5 0.029 6.3E-07 67.5 3.8 81 158-245 307-428 (577)
209 PRK00178 tolB translocation pr 94.5 0.84 1.8E-05 53.4 15.7 127 153-307 206-364 (430)
210 KOG1188 WD40 repeat protein [G 94.3 0.21 4.4E-06 57.7 9.7 140 132-306 26-196 (376)
211 KOG1923 Rac1 GTPase effector F 94.3 0.074 1.6E-06 66.1 6.6 16 349-364 466-481 (830)
212 KOG2919 Guanine nucleotide-bin 94.3 0.29 6.2E-06 56.4 10.6 90 149-245 53-189 (406)
213 KOG2445 Nuclear pore complex c 94.2 0.12 2.5E-06 59.1 7.4 109 137-269 225-335 (361)
214 KOG1009 Chromatin assembly com 94.2 0.082 1.8E-06 61.9 6.2 156 115-293 38-248 (434)
215 PRK02889 tolB translocation pr 94.1 0.31 6.8E-06 57.5 11.1 122 160-307 166-317 (427)
216 KOG0309 Conserved WD40 repeat- 94.1 0.03 6.4E-07 69.1 2.6 64 188-265 182-246 (1081)
217 PF02239 Cytochrom_D1: Cytochr 94.0 0.6 1.3E-05 54.7 13.0 135 148-306 39-202 (369)
218 PLN02919 haloacid dehalogenase 93.9 0.65 1.4E-05 61.3 14.4 78 210-307 806-889 (1057)
219 KOG1517 Guanine nucleotide bin 93.8 0.11 2.3E-06 66.6 6.8 82 157-245 1221-1335(1387)
220 PRK01029 tolB translocation pr 93.6 1.6 3.5E-05 51.9 15.9 83 199-308 319-405 (428)
221 PF06705 SF-assemblin: SF-asse 93.6 10 0.00022 42.2 21.0 76 740-824 71-157 (247)
222 PF02239 Cytochrom_D1: Cytochr 93.6 0.4 8.7E-06 56.1 10.5 96 182-305 12-107 (369)
223 KOG2695 WD40 repeat protein [G 93.5 0.22 4.8E-06 57.6 8.0 132 148-303 255-424 (425)
224 KOG4378 Nuclear protein COP1 [ 93.3 0.19 4.1E-06 60.2 7.2 76 207-306 164-239 (673)
225 KOG1007 WD repeat protein TSSC 93.0 0.48 1E-05 54.0 9.5 96 143-245 117-247 (370)
226 KOG0290 Conserved WD40 repeat- 92.9 0.93 2E-05 51.8 11.6 173 135-335 96-336 (364)
227 KOG1539 WD repeat protein [Gen 92.9 0.23 5E-06 62.4 7.5 81 160-246 175-278 (910)
228 KOG1310 WD40 repeat protein [G 92.7 0.64 1.4E-05 56.5 10.5 32 156-187 61-94 (758)
229 KOG2055 WD40 repeat protein [G 92.4 0.45 9.8E-06 56.7 8.6 119 107-242 355-511 (514)
230 KOG1310 WD40 repeat protein [G 92.3 0.24 5.2E-06 59.9 6.4 51 188-244 74-126 (758)
231 KOG0307 Vesicle coat complex C 92.2 0.35 7.5E-06 62.4 8.0 80 159-245 82-194 (1049)
232 KOG1587 Cytoplasmic dynein int 92.1 0.38 8.1E-06 59.4 7.9 115 159-298 363-509 (555)
233 PRK00178 tolB translocation pr 92.0 1.7 3.7E-05 50.9 13.0 112 168-307 180-320 (430)
234 PF00400 WD40: WD domain, G-be 92.0 0.16 3.5E-06 39.3 3.1 18 156-173 22-39 (39)
235 COG5170 CDC55 Serine/threonine 91.8 0.34 7.4E-06 55.5 6.5 135 157-308 38-205 (460)
236 KOG0322 G-protein beta subunit 91.8 0.39 8.5E-06 54.1 6.9 25 270-294 288-312 (323)
237 KOG3671 Actin regulatory prote 91.7 0.27 5.9E-06 58.9 5.9 6 25-30 375-380 (569)
238 KOG2106 Uncharacterized conser 91.1 1.4 3.1E-05 53.2 10.9 77 157-242 213-315 (626)
239 COG5178 PRP8 U5 snRNP spliceos 90.9 0.14 3E-06 65.6 2.5 19 1057-1075 1204-1222(2365)
240 KOG1272 WD40-repeat-containing 90.8 0.35 7.6E-06 57.7 5.6 91 150-241 296-419 (545)
241 KOG1645 RING-finger-containing 90.8 2.6 5.6E-05 50.1 12.4 153 181-367 169-324 (463)
242 PRK04792 tolB translocation pr 90.7 2.7 5.9E-05 50.2 13.1 93 188-308 244-340 (448)
243 KOG4497 Uncharacterized conser 90.6 1.3 2.7E-05 51.5 9.5 92 152-251 15-130 (447)
244 KOG2236 Uncharacterized conser 90.4 0.58 1.3E-05 55.9 6.9 44 15-61 404-447 (483)
245 PLN02919 haloacid dehalogenase 90.2 3.5 7.5E-05 54.8 14.4 137 152-307 572-771 (1057)
246 KOG3881 Uncharacterized conser 89.9 0.58 1.3E-05 54.9 6.3 95 139-244 202-321 (412)
247 PRK01029 tolB translocation pr 89.6 3.7 8E-05 49.0 12.9 78 209-308 282-361 (428)
248 KOG1963 WD40 repeat protein [G 89.5 2.6 5.6E-05 53.6 11.8 164 153-365 213-390 (792)
249 KOG1923 Rac1 GTPase effector F 89.4 1.3 2.7E-05 55.9 8.9 8 56-63 313-320 (830)
250 KOG4190 Uncharacterized conser 89.2 0.84 1.8E-05 55.3 7.0 117 156-291 746-892 (1034)
251 KOG0994 Extracellular matrix g 89.1 99 0.0021 41.7 25.7 33 279-311 656-691 (1758)
252 KOG2675 Adenylate cyclase-asso 88.9 0.39 8.5E-06 56.9 4.0 28 223-252 421-448 (480)
253 PF08450 SGL: SMP-30/Gluconola 88.7 7.1 0.00015 42.2 13.3 97 188-309 62-167 (246)
254 smart00320 WD40 WD40 repeats. 88.3 1 2.2E-05 31.3 4.5 39 196-241 2-40 (40)
255 PF15492 Nbas_N: Neuroblastoma 87.9 4.5 9.8E-05 46.2 11.3 41 147-187 43-86 (282)
256 KOG1354 Serine/threonine prote 87.8 2 4.2E-05 50.2 8.5 140 156-308 36-197 (433)
257 KOG0280 Uncharacterized conser 87.6 1.2 2.6E-05 51.0 6.7 81 157-245 223-335 (339)
258 KOG1240 Protein kinase contain 87.5 1.6 3.4E-05 57.4 8.3 128 148-298 1050-1218(1431)
259 KOG1409 Uncharacterized conser 87.5 0.76 1.6E-05 53.4 5.0 30 158-187 210-241 (404)
260 KOG1830 Wiskott Aldrich syndro 86.5 3.2 6.9E-05 49.4 9.4 6 150-155 494-499 (518)
261 KOG1912 WD40 repeat protein [G 86.3 6.1 0.00013 50.2 12.0 209 115-325 35-313 (1062)
262 PRK15319 AIDA autotransporter- 86.1 1.3 2.8E-05 60.2 6.8 7 283-289 1912-1918(2039)
263 KOG2139 WD40 repeat protein [G 85.6 7.9 0.00017 45.7 11.8 150 188-361 220-433 (445)
264 PF02897 Peptidase_S9_N: Proly 85.5 5 0.00011 46.7 10.6 59 233-308 200-262 (414)
265 KOG1538 Uncharacterized conser 85.3 1.1 2.5E-05 55.4 5.3 101 188-296 35-153 (1081)
266 KOG1963 WD40 repeat protein [G 85.2 7.1 0.00015 49.9 12.0 88 199-303 448-535 (792)
267 KOG0309 Conserved WD40 repeat- 84.4 1.3 2.7E-05 55.6 5.1 34 153-187 167-202 (1081)
268 KOG2106 Uncharacterized conser 84.2 5.7 0.00012 48.4 10.1 48 188-242 224-274 (626)
269 KOG1334 WD40 repeat protein [G 83.6 1.6 3.4E-05 52.7 5.3 68 157-251 406-474 (559)
270 KOG1240 Protein kinase contain 83.0 25 0.00053 47.1 15.6 201 157-382 1162-1401(1431)
271 KOG0771 Prolactin regulatory e 82.9 5.5 0.00012 47.4 9.2 123 153-307 194-357 (398)
272 KOG2695 WD40 repeat protein [G 82.9 1.6 3.5E-05 50.9 4.9 80 188-292 276-363 (425)
273 KOG1587 Cytoplasmic dynein int 82.7 5.3 0.00011 49.7 9.5 111 156-296 254-378 (555)
274 KOG1524 WD40 repeat-containing 82.3 8.2 0.00018 47.4 10.5 121 146-307 161-288 (737)
275 COG4946 Uncharacterized protei 81.4 39 0.00085 41.4 15.4 161 107-295 277-463 (668)
276 smart00320 WD40 WD40 repeats. 81.1 1.2 2.7E-05 30.9 2.2 18 156-173 23-40 (40)
277 KOG0132 RNA polymerase II C-te 81.1 4 8.8E-05 51.7 7.7 6 369-374 837-842 (894)
278 KOG0974 WD-repeat protein WDR6 81.1 2.4 5.2E-05 54.8 6.0 84 150-242 138-245 (967)
279 KOG2079 Vacuolar assembly/sort 80.6 3.2 7E-05 54.1 6.8 65 153-218 95-183 (1206)
280 KOG4672 Uncharacterized conser 80.0 7.2 0.00016 46.5 8.8 14 8-21 286-299 (487)
281 TIGR02658 TTQ_MADH_Hv methylam 79.6 14 0.00031 43.6 11.2 79 232-331 74-153 (352)
282 PF11101 DUF2884: Protein of u 79.6 1.1E+02 0.0024 34.2 18.4 24 814-837 46-69 (229)
283 PF05308 Mito_fiss_reg: Mitoch 79.4 3 6.6E-05 47.0 5.5 7 86-92 238-244 (253)
284 TIGR02658 TTQ_MADH_Hv methylam 79.4 29 0.00062 41.1 13.5 138 135-308 182-332 (352)
285 KOG2315 Predicted translation 79.3 4.9 0.00011 49.3 7.4 120 108-245 244-392 (566)
286 TIGR03300 assembly_YfgL outer 79.1 21 0.00045 41.1 12.3 81 157-245 241-340 (377)
287 KOG2111 Uncharacterized conser 78.7 35 0.00076 40.0 13.5 93 188-306 161-256 (346)
288 PF01442 Apolipoprotein: Apoli 78.7 82 0.0018 32.2 23.5 23 744-766 3-25 (202)
289 COG3386 Gluconolactonase [Carb 78.7 25 0.00054 40.8 12.6 140 150-307 37-194 (307)
290 PRK04043 tolB translocation pr 78.2 24 0.00053 42.3 12.8 127 153-308 195-359 (419)
291 KOG2675 Adenylate cyclase-asso 78.0 3.2 6.9E-05 49.7 5.2 10 85-95 265-274 (480)
292 COG2706 3-carboxymuconate cycl 77.2 55 0.0012 38.8 14.7 90 206-308 87-177 (346)
293 PF01442 Apolipoprotein: Apoli 75.7 99 0.0021 31.6 25.8 49 773-821 13-64 (202)
294 KOG3914 WD repeat protein WDR4 75.6 15 0.00032 43.8 9.7 93 188-311 134-228 (390)
295 PF01213 CAP_N: Adenylate cycl 75.5 0.91 2E-05 52.5 0.0 7 88-94 265-271 (312)
296 COG5354 Uncharacterized protei 73.8 7.9 0.00017 47.3 7.1 95 135-245 274-397 (561)
297 KOG1064 RAVE (regulator of V-A 73.0 3 6.4E-05 56.9 3.7 72 156-281 2347-2419(2439)
298 KOG1925 Rac1 GTPase effector F 71.2 3.4 7.3E-05 50.0 3.3 6 822-827 483-488 (817)
299 KOG2321 WD40 repeat protein [G 70.6 7.6 0.00016 48.0 6.0 61 157-221 240-325 (703)
300 KOG4849 mRNA cleavage factor I 70.4 15 0.00032 43.2 7.9 14 23-36 224-237 (498)
301 KOG4547 WD40 repeat-containing 70.1 17 0.00038 44.9 8.9 61 188-269 126-186 (541)
302 PRK06800 fliH flagellar assemb 69.9 1.5E+02 0.0033 32.6 14.7 101 744-851 36-140 (228)
303 PF04286 DUF445: Protein of un 69.6 1.8E+02 0.004 33.2 16.7 17 785-801 184-200 (367)
304 KOG4714 Nucleoporin [Nuclear s 69.6 11 0.00024 43.0 6.7 51 188-244 204-255 (319)
305 PF07250 Glyoxal_oxid_N: Glyox 69.5 40 0.00087 38.1 11.0 143 115-301 48-194 (243)
306 KOG0132 RNA polymerase II C-te 68.8 12 0.00026 47.8 7.2 21 51-71 621-641 (894)
307 KOG1354 Serine/threonine prote 68.3 24 0.00053 41.7 9.1 138 158-303 227-431 (433)
308 PF05694 SBP56: 56kDa selenium 67.3 23 0.00049 43.2 9.0 58 231-306 218-277 (461)
309 COG5354 Uncharacterized protei 65.1 71 0.0015 39.5 12.4 121 107-244 145-307 (561)
310 PRK04043 tolB translocation pr 65.0 74 0.0016 38.3 12.8 98 185-308 212-311 (419)
311 KOG4849 mRNA cleavage factor I 64.9 15 0.00033 43.1 6.6 13 4-16 232-244 (498)
312 PF06705 SF-assemblin: SF-asse 64.8 2.4E+02 0.0051 31.6 25.1 37 788-824 9-45 (247)
313 PF14783 BBS2_Mid: Ciliary BBS 64.4 27 0.00058 35.2 7.5 54 152-229 48-101 (111)
314 PF03938 OmpH: Outer membrane 63.9 93 0.002 31.9 11.6 79 737-820 27-112 (158)
315 PF03178 CPSF_A: CPSF A subuni 63.5 1.1E+02 0.0025 34.7 13.4 152 156-355 41-208 (321)
316 PF11715 Nup160: Nucleoporin N 63.1 15 0.00033 44.9 6.7 99 150-266 148-259 (547)
317 KOG1538 Uncharacterized conser 62.7 14 0.0003 46.5 6.1 74 200-300 5-78 (1081)
318 COG5178 PRP8 U5 snRNP spliceos 62.1 4.9 0.00011 52.6 2.4 17 135-151 98-114 (2365)
319 KOG0971 Microtubule-associated 61.2 5.4E+02 0.012 34.5 27.3 217 740-990 263-547 (1243)
320 KOG2236 Uncharacterized conser 60.9 19 0.00042 43.7 6.8 9 77-85 465-473 (483)
321 PRK09752 adhesin; Provisional 60.6 9.5 0.00021 50.8 4.6 8 81-88 955-962 (1250)
322 KOG1008 Uncharacterized conser 59.1 3.7 8E-05 51.2 0.6 49 188-242 131-183 (783)
323 PF04762 IKI3: IKI3 family; I 58.5 53 0.0011 43.6 10.8 108 156-289 220-362 (928)
324 KOG1920 IkappaB kinase complex 57.3 95 0.0021 41.9 12.4 100 150-265 207-334 (1265)
325 KOG4227 WD40 repeat protein [G 57.0 84 0.0018 37.8 10.8 125 157-296 207-378 (609)
326 PF04100 Vps53_N: Vps53-like, 56.1 3.5E+02 0.0076 32.5 16.1 85 1030-1122 122-218 (383)
327 PF04286 DUF445: Protein of un 55.5 3.7E+02 0.008 30.8 20.0 7 606-612 35-41 (367)
328 KOG4497 Uncharacterized conser 55.2 28 0.0006 41.0 6.6 19 157-175 222-240 (447)
329 KOG2315 Predicted translation 54.6 1.1E+02 0.0023 38.4 11.6 187 108-342 140-369 (566)
330 PF07464 ApoLp-III: Apolipopho 54.5 1.4E+02 0.003 31.8 11.1 85 753-854 7-91 (155)
331 PF02333 Phytase: Phytase; In 54.3 4.4E+02 0.0095 32.0 16.4 91 209-317 157-248 (381)
332 KOG1645 RING-finger-containing 53.7 53 0.0011 39.7 8.6 170 107-297 145-352 (463)
333 KOG2391 Vacuolar sorting prote 53.5 24 0.00053 41.5 5.8 7 819-825 265-271 (365)
334 PF06152 Phage_min_cap2: Phage 53.1 4.7E+02 0.01 31.3 19.3 23 769-791 14-36 (361)
335 PF01690 PLRV_ORF5: Potato lea 53.0 11 0.00023 45.9 3.0 26 285-310 192-218 (465)
336 PF13360 PQQ_2: PQQ-like domai 52.0 2.6E+02 0.0057 29.4 13.0 25 283-308 208-232 (238)
337 COG4946 Uncharacterized protei 51.7 38 0.00082 41.5 7.1 72 148-223 400-502 (668)
338 PF03022 MRJP: Major royal jel 51.4 99 0.0021 35.4 10.3 113 236-362 35-172 (287)
339 PF04912 Dynamitin: Dynamitin 50.0 56 0.0012 38.9 8.3 51 746-802 336-386 (388)
340 PF10691 DUF2497: Protein of u 49.6 50 0.0011 31.1 6.2 28 818-845 43-70 (73)
341 KOG4368 Predicted RNA binding 49.4 6.8E+02 0.015 32.1 17.0 30 929-958 255-284 (757)
342 KOG1912 WD40 repeat protein [G 49.0 1E+02 0.0022 40.1 10.4 56 188-246 91-146 (1062)
343 KOG3621 WD40 repeat-containing 48.1 67 0.0015 41.1 8.7 131 151-306 39-199 (726)
344 KOG4640 Anaphase-promoting com 47.4 16 0.00034 45.9 3.3 50 107-176 41-93 (665)
345 COG3851 UhpB Signal transducti 47.0 2E+02 0.0043 34.8 11.8 28 797-824 271-298 (497)
346 PRK14142 heat shock protein Gr 46.7 1.1E+02 0.0024 34.4 9.3 45 788-840 58-102 (223)
347 PRK14163 heat shock protein Gr 46.6 2.2E+02 0.0047 31.9 11.5 46 787-840 64-109 (214)
348 KOG0280 Uncharacterized conser 46.4 57 0.0012 38.1 7.2 78 160-243 136-241 (339)
349 PF15450 DUF4631: Domain of un 46.0 7.2E+02 0.016 31.4 29.0 82 740-824 168-258 (531)
350 KOG1064 RAVE (regulator of V-A 46.0 29 0.00064 48.2 5.6 46 188-242 2317-2365(2439)
351 KOG2394 WD40 protein DMR-N9 [G 46.0 26 0.00057 43.3 4.8 51 209-285 334-384 (636)
352 PF07569 Hira: TUP1-like enhan 45.2 57 0.0012 36.0 6.9 58 146-203 8-85 (219)
353 PF07433 DUF1513: Protein of u 44.5 1.2E+02 0.0026 35.5 9.6 85 188-296 30-119 (305)
354 PF14583 Pectate_lyase22: Olig 44.3 88 0.0019 37.7 8.7 71 107-187 46-123 (386)
355 PF11768 DUF3312: Protein of u 44.2 46 0.001 41.5 6.5 62 156-245 270-331 (545)
356 KOG4673 Transcription factor T 44.0 8.8E+02 0.019 31.8 26.3 136 748-891 507-673 (961)
357 KOG1334 WD40 repeat protein [G 43.2 61 0.0013 39.9 7.1 99 188-307 166-264 (559)
358 TIGR03300 assembly_YfgL outer 43.1 73 0.0016 36.7 7.7 63 153-215 275-359 (377)
359 KOG4190 Uncharacterized conser 43.1 30 0.00065 42.8 4.7 77 199-295 728-804 (1034)
360 PF05879 RHD3: Root hair defec 43.0 9.1E+02 0.02 31.7 22.4 51 904-954 425-475 (742)
361 PF09726 Macoilin: Transmembra 41.6 9.4E+02 0.02 31.5 24.1 37 959-995 617-656 (697)
362 KOG3397 Acetyltransferases [Ge 41.5 21 0.00046 38.6 2.8 9 30-38 174-182 (225)
363 PF10498 IFT57: Intra-flagella 40.4 7.3E+02 0.016 29.9 15.3 103 738-851 219-326 (359)
364 PF06003 SMN: Survival motor n 39.3 9.9 0.00021 43.1 0.0 14 23-36 172-185 (264)
365 KOG2180 Late Golgi protein sor 39.2 5.4E+02 0.012 33.7 14.4 40 1083-1122 186-233 (793)
366 KOG2079 Vacuolar assembly/sort 39.2 37 0.00081 45.0 4.9 74 124-215 124-204 (1206)
367 PLN03229 acetyl-coenzyme A car 38.6 1.1E+03 0.023 31.3 20.3 38 757-796 494-540 (762)
368 PRK14143 heat shock protein Gr 37.7 3E+02 0.0064 31.4 11.0 44 788-839 92-135 (238)
369 PRK09866 hypothetical protein; 37.5 1.1E+03 0.024 31.1 22.4 45 915-959 644-688 (741)
370 PRK14164 heat shock protein Gr 37.4 1.9E+02 0.0041 32.5 9.3 46 787-840 94-139 (218)
371 PF09731 Mitofilin: Mitochondr 37.2 9.3E+02 0.02 30.2 22.1 165 743-915 259-423 (582)
372 PF08553 VID27: VID27 cytoplas 36.8 1.2E+02 0.0026 39.8 8.8 62 230-311 593-654 (794)
373 PF03938 OmpH: Outer membrane 36.5 3.9E+02 0.0085 27.3 11.0 13 791-803 57-69 (158)
374 COG1770 PtrB Protease II [Amin 36.1 8.9E+02 0.019 31.6 15.7 115 153-307 136-257 (682)
375 PF13360 PQQ_2: PQQ-like domai 36.1 5.4E+02 0.012 27.1 15.0 27 154-180 32-60 (238)
376 COG4913 Uncharacterized protei 35.2 1.2E+03 0.026 30.9 20.6 23 755-783 633-655 (1104)
377 PF07433 DUF1513: Protein of u 35.2 2.9E+02 0.0062 32.6 10.7 33 275-307 216-248 (305)
378 PRK10115 protease 2; Provision 35.2 4.5E+02 0.0098 33.9 13.5 25 152-176 133-162 (686)
379 KOG3973 Uncharacterized conser 35.1 8.9E+02 0.019 29.3 14.8 12 772-783 52-63 (465)
380 PHA01972 structural protein 34.4 1.3E+03 0.028 31.0 17.4 33 754-793 9-41 (828)
381 PF10168 Nup88: Nuclear pore c 34.2 1.2E+03 0.026 30.6 19.1 151 740-913 556-715 (717)
382 KOG0972 Huntingtin interacting 34.1 8.6E+02 0.019 28.8 14.1 68 769-843 256-325 (384)
383 PF09726 Macoilin: Transmembra 34.0 1.2E+03 0.026 30.5 23.9 8 360-367 197-204 (697)
384 PRK11138 outer membrane biogen 33.2 2.7E+02 0.0058 32.7 10.4 24 153-176 290-313 (394)
385 TIGR03185 DNA_S_dndD DNA sulfu 32.9 1.2E+03 0.025 30.0 27.7 11 1081-1091 560-570 (650)
386 PRK14157 heat shock protein Gr 31.8 2.6E+02 0.0056 31.7 9.3 44 788-839 102-145 (227)
387 KOG4673 Transcription factor T 31.5 1.3E+03 0.029 30.3 28.2 65 731-807 401-465 (961)
388 PRK14628 hypothetical protein; 31.0 64 0.0014 32.9 4.1 22 743-764 16-37 (118)
389 PRK14155 heat shock protein Gr 30.9 2.8E+02 0.006 31.0 9.3 46 787-840 37-82 (208)
390 KOG1897 Damage-specific DNA bi 30.7 7.8E+02 0.017 33.4 14.3 187 117-331 94-315 (1096)
391 PRK14140 heat shock protein Gr 30.7 4.7E+02 0.01 28.9 10.9 54 773-839 52-105 (191)
392 PRK14148 heat shock protein Gr 30.6 4.1E+02 0.0089 29.4 10.4 43 789-839 66-108 (195)
393 PF12868 DUF3824: Domain of un 30.6 1.1E+02 0.0025 31.9 6.0 13 20-32 76-88 (137)
394 cd09236 V_AnPalA_UmRIM20_like 30.5 9.1E+02 0.02 28.6 14.1 81 736-824 189-286 (353)
395 PRK14141 heat shock protein Gr 30.3 5.9E+02 0.013 28.5 11.7 45 788-840 56-100 (209)
396 PHA01750 hypothetical protein 30.0 1.9E+02 0.0041 27.1 6.4 33 776-808 27-59 (75)
397 KOG1922 Rho GTPase effector BN 29.8 91 0.002 40.6 6.4 7 934-940 735-741 (833)
398 PRK15362 pathogenicity island 29.7 1.2E+03 0.026 29.1 23.0 12 446-457 20-31 (473)
399 PRK14156 heat shock protein Gr 29.7 6.2E+02 0.013 27.7 11.5 44 788-839 52-95 (177)
400 PF08450 SGL: SMP-30/Gluconola 29.7 7.5E+02 0.016 26.8 13.7 92 188-306 24-123 (246)
401 PRK14154 heat shock protein Gr 29.6 2.5E+02 0.0054 31.4 8.6 45 787-839 76-120 (208)
402 PF12252 SidE: Dot/Icm substra 29.4 1.7E+03 0.037 30.8 25.0 79 747-826 1029-1112(1439)
403 PF05096 Glu_cyclase_2: Glutam 29.2 5.7E+02 0.012 29.7 11.6 53 254-306 202-261 (264)
404 PF07250 Glyoxal_oxid_N: Glyox 28.9 1.8E+02 0.004 33.0 7.7 94 183-296 43-138 (243)
405 KOG1275 PAB-dependent poly(A) 28.9 26 0.00056 45.7 1.2 34 154-187 184-218 (1118)
406 PF10737 GerPC: Spore germinat 28.7 3.7E+02 0.008 29.4 9.5 71 877-951 99-174 (176)
407 PF04003 Utp12: Dip2/Utp12 Fam 28.7 97 0.0021 29.8 4.9 99 1053-1155 2-108 (110)
408 PF10154 DUF2362: Uncharacteri 28.3 5.4E+02 0.012 32.5 12.0 77 734-811 89-176 (510)
409 PF06248 Zw10: Centromere/kine 27.9 1.3E+03 0.029 29.1 18.8 26 966-992 210-235 (593)
410 PF14817 HAUS5: HAUS augmin-li 27.8 1.5E+03 0.032 29.5 20.0 57 790-852 388-448 (632)
411 PF06657 Cep57_MT_bd: Centroso 27.6 3.5E+02 0.0077 25.7 8.2 54 738-803 16-69 (79)
412 PRK13616 lipoprotein LpqB; Pro 27.6 7.6E+02 0.016 31.5 13.5 138 152-310 356-530 (591)
413 PRK02888 nitrous-oxide reducta 27.6 5.4E+02 0.012 33.2 12.0 162 107-296 287-452 (635)
414 PF11101 DUF2884: Protein of u 27.6 9.1E+02 0.02 27.1 17.2 19 964-982 199-217 (229)
415 PRK14151 heat shock protein Gr 27.5 5.9E+02 0.013 27.7 10.9 46 787-840 44-89 (176)
416 COG1283 NptA Na+/phosphate sym 27.3 1.4E+03 0.03 29.2 15.5 13 769-781 363-375 (533)
417 PF09903 DUF2130: Uncharacteri 27.2 5.2E+02 0.011 29.8 11.0 47 777-824 192-238 (267)
418 KOG2203 GTP-binding protein [G 27.2 1.5E+03 0.032 29.4 16.6 187 759-973 283-475 (772)
419 PRK14144 heat shock protein Gr 26.8 5.9E+02 0.013 28.4 10.8 45 788-840 70-114 (199)
420 KOG2444 WD40 repeat protein [G 26.5 42 0.00091 37.8 2.2 21 156-176 113-133 (238)
421 PF09477 Type_III_YscG: Bacter 26.5 60 0.0013 33.0 3.0 31 1029-1059 44-74 (116)
422 PRK14158 heat shock protein Gr 26.5 6.3E+02 0.014 28.0 11.0 45 788-840 65-109 (194)
423 PRK10325 heat shock protein Gr 26.5 3.4E+02 0.0073 29.9 9.0 45 787-839 63-107 (197)
424 PF14712 Snapin_Pallidin: Snap 26.3 5.5E+02 0.012 24.2 9.4 27 738-764 13-39 (92)
425 smart00135 LY Low-density lipo 26.1 94 0.002 24.1 3.6 31 276-306 9-39 (43)
426 PF13570 PQQ_3: PQQ-like domai 26.0 85 0.0019 25.1 3.3 24 153-176 17-40 (40)
427 PF05960 DUF885: Bacterial pro 25.8 5.1E+02 0.011 31.9 11.4 30 746-775 23-52 (549)
428 cd00179 SynN Syntaxin N-termin 25.7 4.7E+02 0.01 26.4 9.4 9 740-748 7-15 (151)
429 PF01025 GrpE: GrpE; InterPro 25.7 2.4E+02 0.0052 29.3 7.4 30 771-805 24-53 (165)
430 KOG2444 WD40 repeat protein [G 25.6 1.1E+02 0.0023 34.7 5.0 17 159-175 72-88 (238)
431 PF00780 CNH: CNH domain; Int 25.3 4.8E+02 0.01 28.6 10.1 100 152-266 143-266 (275)
432 PF11715 Nup160: Nucleoporin N 25.3 55 0.0012 40.1 3.1 24 156-179 229-252 (547)
433 KOG1832 HIV-1 Vpr-binding prot 25.2 99 0.0021 40.8 5.2 42 135-176 1091-1132(1516)
434 PF14644 DUF4456: Domain of un 25.1 9.4E+02 0.02 26.4 14.7 76 744-824 53-148 (208)
435 PF15469 Sec5: Exocyst complex 25.1 8.3E+02 0.018 25.8 18.7 62 889-959 89-152 (182)
436 KOG0119 Splicing factor 1/bran 25.1 1.9E+02 0.0041 36.0 7.2 71 22-94 436-538 (554)
437 PF08703 PLC-beta_C: PLC-beta 25.0 9.6E+02 0.021 26.5 16.9 87 755-843 69-159 (185)
438 PRK14162 heat shock protein Gr 24.9 6.9E+02 0.015 27.7 10.9 44 788-839 64-107 (194)
439 smart00502 BBC B-Box C-termina 24.7 6.2E+02 0.013 24.2 15.1 20 744-763 5-24 (127)
440 PRK14160 heat shock protein Gr 24.7 7.6E+02 0.017 27.7 11.3 45 787-839 85-129 (211)
441 COG0576 GrpE Molecular chapero 24.4 4.4E+02 0.0096 28.9 9.4 45 787-839 60-104 (193)
442 KOG4640 Anaphase-promoting com 24.4 1.4E+02 0.0031 37.9 6.3 62 159-247 34-96 (665)
443 PRK14149 heat shock protein Gr 24.3 3.5E+02 0.0076 29.9 8.5 44 788-839 61-104 (191)
444 KOG0804 Cytoplasmic Zn-finger 24.1 3.8E+02 0.0082 33.2 9.4 62 743-821 379-440 (493)
445 PRK14147 heat shock protein Gr 23.9 3.5E+02 0.0076 29.2 8.4 44 788-839 43-86 (172)
446 PRK14150 heat shock protein Gr 23.9 4.4E+02 0.0096 29.0 9.3 44 788-839 63-106 (193)
447 KOG3859 Septins (P-loop GTPase 23.9 5.8E+02 0.013 30.2 10.4 74 743-818 327-400 (406)
448 PRK14139 heat shock protein Gr 23.8 3.7E+02 0.008 29.5 8.5 56 771-839 45-100 (185)
449 PF10241 KxDL: Uncharacterized 23.4 6.7E+02 0.015 24.1 10.0 71 734-808 9-81 (88)
450 KOG4191 Histone acetyltransfer 23.3 7.9E+02 0.017 30.6 11.7 99 734-841 403-501 (516)
451 KOG4590 Signal transduction pr 23.3 1.1E+02 0.0024 37.1 5.0 12 132-143 241-252 (409)
452 COG3823 Glutamine cyclotransfe 23.0 3.3E+02 0.0071 31.0 8.0 34 273-306 226-259 (262)
453 PRK14145 heat shock protein Gr 22.5 5.2E+02 0.011 28.7 9.4 46 787-840 69-114 (196)
454 TIGR03513 GldL_gliding gliding 22.4 9.5E+02 0.021 26.9 11.3 53 943-995 134-192 (202)
455 KOG3156 Uncharacterized membra 22.0 1.2E+03 0.026 26.5 13.6 141 816-975 65-210 (220)
456 TIGR03185 DNA_S_dndD DNA sulfu 22.0 1.7E+03 0.038 28.4 24.4 15 769-783 206-220 (650)
457 cd00179 SynN Syntaxin N-termin 21.9 8.3E+02 0.018 24.6 14.3 20 880-899 106-125 (151)
458 KOG2129 Uncharacterized conser 21.6 1.6E+03 0.035 27.9 18.1 29 1037-1065 442-470 (552)
459 TIGR03752 conj_TIGR03752 integ 21.3 6.7E+02 0.014 31.4 10.8 53 1041-1095 412-464 (472)
460 PF03276 Gag_spuma: Spumavirus 21.3 2.9E+02 0.0063 34.9 7.8 11 177-187 309-319 (582)
461 PRK15361 pathogenicity island 21.2 1.2E+03 0.025 26.1 16.2 32 806-837 130-168 (195)
462 PF01690 PLRV_ORF5: Potato lea 20.9 64 0.0014 39.6 2.4 8 300-307 182-189 (465)
463 PRK14153 heat shock protein Gr 20.8 4.5E+02 0.0098 29.1 8.5 45 787-839 57-101 (194)
464 PF05918 API5: Apoptosis inhib 20.8 1.3E+03 0.028 29.6 13.4 88 742-843 95-188 (556)
465 PRK14146 heat shock protein Gr 20.6 4.3E+02 0.0094 29.6 8.5 44 788-839 79-122 (215)
466 PF14781 BBS2_N: Ciliary BBSom 20.5 1.4E+02 0.003 31.3 4.4 76 165-245 37-127 (136)
467 COG1480 Predicted membrane-ass 20.3 9.7E+02 0.021 31.4 12.2 38 782-819 86-123 (700)
468 PF05694 SBP56: 56kDa selenium 20.2 2.4E+02 0.0051 34.9 6.8 108 188-307 224-343 (461)
469 PRK02888 nitrous-oxide reducta 20.2 3.5E+02 0.0077 34.8 8.5 73 167-245 271-353 (635)
470 KOG1937 Uncharacterized conser 20.1 5.9E+02 0.013 31.7 9.8 67 736-811 449-515 (521)
471 KOG4714 Nucleoporin [Nuclear s 20.1 1.9E+02 0.0042 33.5 5.7 31 157-187 192-224 (319)
472 PF10186 Atg14: UV radiation r 20.0 1.2E+03 0.027 25.9 14.3 28 740-767 21-48 (302)
No 1
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=100.00 E-value=1.1e-153 Score=1337.39 Aligned_cols=1077 Identities=44% Similarity=0.656 Sum_probs=923.7
Q ss_pred cCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCC-----------CCCCCCCCC
Q 001070 6 QSQSPNQNQKQFDMRNWFPPYPPPSSSAAGDNFFPYP------PPPPPPPPEPHANMHPH-----------PYPHGPHRL 68 (1165)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ppp~p~p~~~~~~~~~-----------~~~~~~~~~ 68 (1165)
.+.+..+|.++||..++|-|-++|.++..|++-+.-- ||--.--| -+-+-. .+-.-+.++
T Consensus 5 psnt~p~~~p~~dlg~l~~P~~~~~~~~t~p~~n~Q~~qvi~~~~~~s~t~---~gV~~~~~~vvsss~~t~~~~~Rt~~ 81 (1283)
T KOG1916|consen 5 PSNTNPHNKPPFDLGNLFKPSSNPYPPPTGPFLNNQYCQVIYAPPGISATP---SGVHQRQQDVVSSSNATNLKPQRTLS 81 (1283)
T ss_pred CCCCCCCCCChhhcccccCCCCCCCCCCCCchhhhhhceeEecCCCccccc---cccccccchhhccccccccchhhhcc
Confidence 4556678999999999999999998874444333211 11111000 011110 122245888
Q ss_pred CCCCC-CCCCCCCCCCChHHHHHhhcCC-------CCC--CC---------CCCCCC--------CceeecCCceEEecc
Q 001070 69 LPYTP-LPTTTVVSPNAGPQILALLNNN-------KSK--HV---------GSTAPI--------YGKRVFGDYVAYDVD 121 (1165)
Q Consensus 69 ~~~~~-~~~~~~~~~~~~~~~~~~l~~~-------~~~--~~---------~~~~p~--------~Gr~l~g~~~~~dVd 121 (1165)
||.|| ....+..+.|+|..|.++|++- |++ |. +..+|+ +||++.|++.|||||
T Consensus 82 yp~~pva~~~~~~~~~yg~~I~~~~~~~~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~~~vg~lfVy~vd 161 (1283)
T KOG1916|consen 82 YPTPPVAVQSPRKNHNYGTHILALLNGMENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGRRLVGELFVYDVD 161 (1283)
T ss_pred CCCCcccccCcccccchHHHHHHHhhchhhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHHHHhhhhheeehH
Confidence 88888 4448889999999999999632 555 21 234555 999999999999999
Q ss_pred cCCCCCCCCCCcccccccccCCCcccccccEeeecCceEEEeecCCcEEEEeCcchhhHhhcCCcc--------------
Q 001070 122 AVEEGREPTQQLEVNPITKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNTATRSLLRGHTK-------------- 187 (1165)
Q Consensus 122 ~~~~ge~~~pqlev~pIt~Y~sd~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t~ir~llrGH~q-------------- 187 (1165)
+ ..||.| |+|+|+||++|++++.++.|++|+||..|||||.++|.||+++|+++.|.+||||++
T Consensus 162 ~-l~G~iq-~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~ 239 (1283)
T KOG1916|consen 162 V-LQGEIQ-PQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLK 239 (1283)
T ss_pred h-hccccc-cceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhh
Confidence 9 999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q 001070 188 -------------------------------------------------------------------------------- 187 (1165)
Q Consensus 188 -------------------------------------------------------------------------------- 187 (1165)
T Consensus 240 l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~ 319 (1283)
T KOG1916|consen 240 LASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKF 319 (1283)
T ss_pred heeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeE
Confidence
Q ss_pred ------------------------------------------------EEEeecCCCceeEEecCCCCCCcceeEeecCC
Q 001070 188 ------------------------------------------------IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAP 219 (1165)
Q Consensus 188 ------------------------------------------------VriWD~~~g~pl~~lephdG~sV~SVaFl~aP 219 (1165)
|+||..++.+|+.+.+||+||+|.|..|.++|
T Consensus 320 w~~a~w~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~a~~~~vs~~~~~hpV~S~i~v~S~ 399 (1283)
T KOG1916|consen 320 WAEAPWQCLLDKLIDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRKAQPLVVSRPHDGHPVLSAIFVTSP 399 (1283)
T ss_pred eeccchhhhhhhcccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhcchhhhhhhhhhhhcceeccccccccC
Confidence 77888888889999999999999999999999
Q ss_pred CCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCC-cceEEE-E-eccCCCCCccccccEEEEEeecCCcEEEEeccC
Q 001070 220 NQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAES-WKCTQT-L-DLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAK 296 (1165)
Q Consensus 220 ~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~-w~C~QT-L-e~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~ 296 (1165)
++++|+.++++|++||++|+|..++.+||+.+++.+. |+|+|| | .+.++.|+..++||||+|..+...+++++| ++
T Consensus 400 ~R~~h~e~~~~~~~nr~~~i~~s~g~~g~ls~a~v~~k~rcv~tklqd~~~~~ePq~~~d~~n~~~als~h~~~~~a-~s 478 (1283)
T KOG1916|consen 400 ERPDHIELITGGPLNRELKIWVSAGEEGWLSPADVESKWRCVQTKLQDLKSSTEPQAEPDFFNQVIALSEHGLLLLA-AS 478 (1283)
T ss_pred CCccccccccCCcchhhhhhhhhcccccccchhhhhhhHHHhhhhhhhcccccCCccchhhhcchHHHHHHHHHHHh-hh
Confidence 9999999999999999999999999999999999986 999999 7 678889999999999999999999999999 99
Q ss_pred CCcEEEEEeecCCCccccccccccccccccceeeeeeccCCCCcceEEEEEeehhhhhhhccccccccCCCCCCCCCCCC
Q 001070 297 KNAIYSVHLGYGNNSAATRIDYIAEFTVTMPVLSFTGTIDPPSEHIIKLYCVQTQAIQQYSLNLFQCLPPPAESGGLERP 376 (1165)
Q Consensus 297 r~aIYalhl~~g~~~~~~r~dyiaeF~v~~PILSft~~~d~~ge~~vq~yCvQtqAIQqy~l~~~~c~pp~~~~~~~e~~ 376 (1165)
||++|.+|++|+..+.-++||||.||+++||||||. +.|+..+-.+++|||||-|||||.++ |+.+++|++++
T Consensus 479 r~el~sv~l~~~a~~~e~~~~~~~e~~~p~d~Ls~~-te~pp~~~~~~v~~vqt~alqq~Ta~------p~r~s~Gssss 551 (1283)
T KOG1916|consen 479 RNELYSVHLDYGASPVETDMDYLSEFTVPMDILSFI-TEDPPEEPTVKVYCVQTLALQQYTAD------PPRESSGSSSS 551 (1283)
T ss_pred hhhhhhccCCcccCCCcchhhhhhhcCCCccceeec-cCCCCCCCCCceeeeehHHHHHHhcC------CcccccCcccc
Confidence 999999999999999999999999999999999999 88888999999999999999999999 77899999999
Q ss_pred CCCccccc-cCC---cccccccCCCCCCCCcccccCccccCCCCCCccccccccccCCCCCCCCcccccccCCCcccccC
Q 001070 377 DSSVSNDA-NGS---RLSEFLFPSSTSKPSFSETTGAVRYPQLSTSHEATTSQENLTSKTESQPLSLARTTSDTNVVCVA 452 (1165)
Q Consensus 377 ~~~~s~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (1165)
+++|||.+ .++ -+.-+..+...++|+.+..+++.....+++...+ +...++.++.+++. +.+.+++++
T Consensus 552 ~ssvs~~a~av~sms~tsa~kpt~~~p~P~~l~~~s~~~n~~S~~a~sa-ss~aa~p~~~~p~t-------s~~p~a~~~ 623 (1283)
T KOG1916|consen 552 DSSVSREANAVESMSETSAVKPTLLPPKPSILVNRSELANDLSFPASSA-SSLAAVPPNGEPKT-------SGAPSAYAL 623 (1283)
T ss_pred hhHHHHHhhhhhhhcccccCCcccCCCCchhhhccHhhhhccCCCcccc-ccccccCCCCCCCC-------CCCCccccc
Confidence 99999976 443 2223333444578999999999877777766665 33557777777776 223367788
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCcCCCcccccc-cccCCCCCCCCCcccccCCCCC-ccc
Q 001070 453 SPPLPLSPSFSRKHSGSINPPNSSELGSLLNEPGGSQPIIDSSFDGKTDTTQV-LSHVPSLDSDANNDKINIAPND-ISR 530 (1165)
Q Consensus 453 s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d-~~~ 530 (1165)
||.+|. ++++++|++..+-..+|+..+....++++++.|| +.++++++.. ..|+-+.+.+.|+.+.++..+| .+.
T Consensus 624 sp~~pg--q~~S~~Sa~~~~v~~~epv~~~~~~~~~t~s~d~-vi~~~~~v~~r~~~~~s~e~~sR~k~s~v~~~~e~~~ 700 (1283)
T KOG1916|consen 624 SPQLPG--QLSSKLSAYHTPVEAVEPVGPHHALGGKTRSADY-VIRQADTVGSRNLDVSSVEELSRSKDSNVTPDDEVSG 700 (1283)
T ss_pred CCCCCC--cccchhhhhhhhHHhhcccCCcccCCCCCcchHH-HhhhcchhhcccchhHHHHHhhhcccCCCCCCCCcch
Confidence 899988 8999999999999999999999999999999999 9999999998 6677788899999888888554 677
Q ss_pred CCCCCCCCCCCcccChhHhhhccCCCCcc--cccCCccccceeeccCCCCcceeEEEeccCcccc-cccCcccccchhhh
Q 001070 531 ALNPSMFKHPTHLITPSEILMSASSSETT--NIIGGKNEEEVVVNSDAGNAEVEVKVLDETRFTH-DEFGSRGESQNLVS 607 (1165)
Q Consensus 531 ~~~~~~f~~~~hl~tpsei~~~~~~s~~~--~~~~~~~~~~v~~~~~~~~~e~~~k~v~~~~~~~-~~~~~~~~~~~~~~ 607 (1165)
+.+|.. ||||+||+ +.+..+=++ ..+++.++.|| |||.+..|||+|.++++...| ++...+-...+...
T Consensus 701 m~s~as---~~hl~SP~---~~~~~~i~tqd~~D~~~~~~d~--~ndp~dlE~el~~~ss~~~sqv~~t~p~it~e~cSs 772 (1283)
T KOG1916|consen 701 MRSPAS---PTHLVSPV---SSPEASITTQDGRDRDANIGDV--NNDPRDLEVELKEESSAPDSQVGETNPHITTENCSS 772 (1283)
T ss_pred hhCccc---ccccCCCC---CCcccccccccccccCcccccc--cCCcchhHHHHHhccCCCccccCCCCCcccccccch
Confidence 777733 99999992 222222222 78999999987 999999999999999999999 99988888888899
Q ss_pred HhhhhhhhcccCCccccccccccCCCcccccccccccccccccccccCCCCCCCccccccccccCCCCCCCCcccccccc
Q 001070 608 ENREKYLRYQATDPRIGMAAKCAGTSAETCVAEEAQEVDGAGIMETLAQPPCNDEAEVEDSTQDLDGGVSDSTMTTTFAQ 687 (1165)
Q Consensus 608 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1165)
|.+|..||+|++.++.+|+|+|+. .+|+....++..+...+.+ ..++.....+..++|+++++
T Consensus 773 e~~~~~~~sQa~~~S~~~~rppy~------~t~g~~~~~~S~~~s~~~~----~~a~~~s~S~g~sak~p~~~------- 835 (1283)
T KOG1916|consen 773 EAREPRFCSQASNLSTEMARPPYP------LTEGRDIPGASAAYSQPDD----AGAELGSDSRGFSAKLPAPR------- 835 (1283)
T ss_pred hhhhhhHHHHhhhhccccCCCCcc------ccccCCCCCcccccCCccc----hhhhhccccCCCcccCCCcc-------
Confidence 999999999999999999999987 5566666666666533333 24556666777777777655
Q ss_pred CCCccchhhhcccccccCCCCCCCCccccccccCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 001070 688 TGASSAKGKKQKEKKYQASSQCSPSSTVLNLANLSNEPAGSSSLPSAPAAFSQVIAMQDMLNQLMTMQKELQKQMSNLVT 767 (1165)
Q Consensus 688 ~~~~~~~~k~~k~~~~q~~~~~s~~~~~~n~~~s~~e~~~~~~~~~~~~~~~q~~~mq~~l~ql~~~qke~qkqm~~~v~ 767 (1165)
.| +||||+|++++|.+|.++.+....|.+|++++.....+.|..+ .++|+.++|+.|+|||+-|||||.|+.+-++
T Consensus 836 --l~-ak~~k~kg~~~~spgl~~t~s~~~~lad~~~~qs~qln~p~ed-~~~~l~~qQe~~a~l~~sQ~el~~~l~~ql~ 911 (1283)
T KOG1916|consen 836 --LP-AKGKKQKGKNSQSPGLSSTSSNVANLADSFNEQSQQLNHPMED-LLPQLLAQQETMAQLMASQKELQRQLSNQLT 911 (1283)
T ss_pred --cc-ccccccCCCcCCCCCccccccchHHHHHHHHHHHhhhcCChhh-HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhc
Confidence 44 7999999999999999999999999999999999999976543 3899999999999999999999999999777
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh
Q 001070 768 LPVTKEGRRLEASLGRGIEKAVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVKKELAA-VG 846 (1165)
Q Consensus 768 ~plsKE~kklE~~L~~~ieK~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk~LKkeV~s-Vv 846 (1165)
.| ||-.|++.|||.+|.+-|++|+||+|+-+++|++.++.|++|++.+++++.+.+++++||+||+||+. |+
T Consensus 912 g~-------le~~l~~~iEk~lks~~d~~~~rl~e~la~~e~~~r~~~~qi~q~ltq~~s~~~~~~~e~ti~~El~~tv~ 984 (1283)
T KOG1916|consen 912 GP-------LEVALGRMIEKSLKSNADALWARLQEELAKNEKALRDLQQQITQQLTQFLSKELNAMFEKTIKKELAKTVG 984 (1283)
T ss_pred ch-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 76 99999999999999999999999999999999999999999999999999999999999999999995 99
Q ss_pred hhhHhhhhhhHHHHHHHHHHHHHhh-cchhhhHHHHHHHHHHHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhHhhcchhH
Q 001070 847 PAIVRTISPSIEKTITSAIVESFQR-GVGDKAVNQLERSVNSRLEATVGRQIQAQFQTSGKHALQDALKSSVEASVIPAF 925 (1165)
Q Consensus 847 PAI~~~t~~avekqlss~l~eslq~-~l~dk~vnqLeK~V~s~Lp~aVaraIq~~vqtsv~qaIqdavr~af~stLIPAF 925 (1165)
|+|.+.+.+.+++.+++++.+.++. +++++.++||.|+++ |.++|+|+++.+||+++. ||++|+++|+++|||+|
T Consensus 985 P~v~rs~~p~~~q~~~s~itkl~~~eg~~kenI~ql~KSkn--l~dtvar~i~~~~Qtsg~--lQ~a~resm~SsviPaf 1060 (1283)
T KOG1916|consen 985 PCVARSVEPVIEQTVSSAITKLFQREGIGKENINQLLKSKN--LEDTVARQIQAQFQTSGP--LQEALRESMESSVIPAF 1060 (1283)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhhcc--HHHHHHHHHHHHHhccch--HHHHHHHHhhhhccHHH
Confidence 9999999999999999999999999 999999999999998 999999999999999877 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCC
Q 001070 926 EKSCKAMFEQVDATFQKGMVEHTTATLQHFESTHSPLALVLRESVNSVSSMAQTLSGEFVDGQRKLFDLAGVRNNTSAFN 1005 (1165)
Q Consensus 926 E~scq~MFqQV~~~F~rGm~E~~~qlQqq~dSaKtsLv~~L~etIssmaa~q~~LqsEll~lQrQL~~~a~s~qns~as~ 1005 (1165)
|++|++||+||+++|+.|+.||++|+...+.+.- ..+++.+|..+.|..++....+.++.++.+
T Consensus 1061 EKScqaMF~Qi~daF~~Gi~e~~~q~~s~~~s~~----------------qr~a~nrE~~~~ql~~L~~t~~sa~~~~~~ 1124 (1283)
T KOG1916|consen 1061 EKSCQAMFQQIDDAFQKGIQEHTQQLISSASSVP----------------QRQALNRELAEAQLNGLALTAASATEQGSN 1124 (1283)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc----------------hhhhhhhhHHHHHHHHHHHHHHHHhhcCCc
Confidence 9999999999999999999999997754433321 012344455455544443333333333444
Q ss_pred CCC-CCCCCCCCCCcc-ccccCCCcHHHHHHhhccCcHHHHHHHHHhcCCHHHHHHHhhccCcccccccCCCCcchhHHH
Q 001070 1006 PSV-PLSNGPLLGLHE-KVEATMDPTKELSRLVSDRKYEEAFTTALQRSDVSIVSWLCSQVDMHGLLSMVPLPLSQGVLL 1083 (1165)
Q Consensus 1006 Ps~-Qp~~~P~~as~E-~vEa~lDp~~eI~qLI~eGqyEEAF~kALqSsDlsLV~~LcsrvDP~~Lfsl~PlpLSQgVLL 1083 (1165)
|.. +...+|..++=+ +.++..+|+.+|.|||.+|+|||||++||+++|++||.|+|+++|...+|.++||+|+|+|||
T Consensus 1125 pl~~~l~~~~~~~~~~a~~~a~~~P~~~i~~ll~~~~~~~af~~al~~~d~~lv~~~~~~~d~~~~~a~~~~~l~q~vll 1204 (1283)
T KOG1916|consen 1125 PLVTQLSAGPVGALLEAMRSAAMTPTTEISQLLSEGKYNEAFTQALQASDLSLVSWLCSQVDLRQLFAMNPCPLSQGVLL 1204 (1283)
T ss_pred chHHHHhcchHHHHHHHHHHccCCcHHHHHHHHhcchHHHHHHHHHHhccchhhhHhhhccCHHHhcCCCCCcchHHHHH
Confidence 443 222333322223 456788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccChHHHHHHHHHHHHHcCCCCchhHHhHHHHHHHHHHHHHhhhcCCCCccccchhHHHHHHHHHHHhhh
Q 001070 1084 SLLQQLACDINKDTARKLAWLTDVAAAINPADPMIAVHARPIFEQVYQRLHHQRSSPTISGAELSSIRLLIHVINSMLMT 1163 (1165)
Q Consensus 1084 SLIQQLSsDL~tdt~lKL~WLEeal~aLDpsDP~IrehvPkIL~~L~qrL~~~~slp~~s~~d~~~lRLl~hvinslL~s 1163 (1165)
||||||+||+.+++.+|++||.+|+.+||++||+||+|+|+|+++||++|++|++.| +.+.+++|||||+||++|++
T Consensus 1205 sliqqla~d~s~~~~~k~~~~~~~~~ain~sd~~~~~ha~~v~~~~y~~~~~~~~~~---~~~~s~vrlim~~i~s~~~~ 1281 (1283)
T KOG1916|consen 1205 SLIQQLACDISTDTSLKLRYLTEAVLAINPSDPITRVHARPVFEQVYQILHQFRNAP---PSNVSAVRLIMHVINSYLMS 1281 (1283)
T ss_pred HHHHHHHhhcccchHHHHHHHHHHHHhcCccCchhHhhhhHHHHHHHHHHHHHhcCC---ccchHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999866 56789999999999999999
Q ss_pred cC
Q 001070 1164 FK 1165 (1165)
Q Consensus 1164 ~k 1165 (1165)
||
T Consensus 1282 ~k 1283 (1283)
T KOG1916|consen 1282 LK 1283 (1283)
T ss_pred CC
Confidence 98
No 2
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=99.69 E-value=1.5e-14 Score=173.28 Aligned_cols=140 Identities=21% Similarity=0.257 Sum_probs=107.4
Q ss_pred eeEEecCCCCCCcceeEeecC----CCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceE-----EEEeccCC
Q 001070 198 PLIILKPHGGQPVNSAQYLTA----PNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCT-----QTLDLKSS 268 (1165)
Q Consensus 198 pl~~lephdG~sV~SVaFl~a----P~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~-----QTLe~~~s 268 (1165)
+++-|+||||++-.|..|.+. ++-+.|+|+||+...||++|+|++ ..|+|. +++...+
T Consensus 274 clhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~------------a~w~Cll~~~~d~v~iV~- 340 (1283)
T KOG1916|consen 274 CLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE------------APWQCLLDKLIDGVQIVG- 340 (1283)
T ss_pred hhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec------------cchhhhhhhcccceEeec-
Confidence 599999999886666668663 667889999999999999999997 569999 5555432
Q ss_pred CCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEeecCCCccccccccccccccccceeeeeecc-------------
Q 001070 269 AKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGYGNNSAATRIDYIAEFTVTMPVLSFTGTI------------- 335 (1165)
Q Consensus 269 ~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~g~~~~~~r~dyiaeF~v~~PILSft~~~------------- 335 (1165)
. | + .+|..+...+|+.+.+..|+.+|.|.+-.... +.+..+.+|...|||+|-+...
T Consensus 341 p----~-~--~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~---a~~~~vs~~~~~hpV~S~i~v~S~~R~~h~e~~~~ 410 (1283)
T KOG1916|consen 341 P----H-D--GEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK---AQPLVVSRPHDGHPVLSAIFVTSPERPDHIELITG 410 (1283)
T ss_pred C----C-C--ccccchhhhHHHHHHHHHhhhHHHHHHhhcch---hhhhhhhhhhhcceeccccccccCCCccccccccC
Confidence 1 0 1 14555667889999999999999999887544 7899999999999999943321
Q ss_pred CC----------CCcc--------eEEEEEeehhhhhhhccccc
Q 001070 336 DP----------PSEH--------IIKLYCVQTQAIQQYSLNLF 361 (1165)
Q Consensus 336 d~----------~ge~--------~vq~yCvQtqAIQqy~l~~~ 361 (1165)
++ .|++ ..++|||||+ ||.|...++
T Consensus 411 ~~~nr~~~i~~s~g~~g~ls~a~v~~k~rcv~tk-lqd~~~~~e 453 (1283)
T KOG1916|consen 411 GPLNRELKIWVSAGEEGWLSPADVESKWRCVQTK-LQDLKSSTE 453 (1283)
T ss_pred CcchhhhhhhhhcccccccchhhhhhhHHHhhhh-hhhcccccC
Confidence 11 2332 3689999999 999987765
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.47 E-value=1.6e-13 Score=153.80 Aligned_cols=118 Identities=22% Similarity=0.430 Sum_probs=92.7
Q ss_pred Cceee-cC--C--ceEEecccCCCCCCCCCCcccccccccCCCcccccccEeeecCceEEEeecCCcEEEEeCcc--hhh
Q 001070 107 YGKRV-FG--D--YVAYDVDAVEEGREPTQQLEVNPITKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNT--ATR 179 (1165)
Q Consensus 107 ~Gr~l-~g--~--~~~~dVd~~~~ge~~~pqlev~pIt~Y~sd~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t--~ir 179 (1165)
.|++| +| | ...+|.+++-| ..-++ .-...++-=-++.||+.||+|++||.||+||-.+ .+-
T Consensus 126 ~g~~l~tGsGD~TvR~WD~~TeTp------~~t~K------gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g 193 (480)
T KOG0271|consen 126 TGSRLVTGSGDTTVRLWDLDTETP------LFTCK------GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG 193 (480)
T ss_pred CCceEEecCCCceEEeeccCCCCc------ceeec------CCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccc
Confidence 78898 55 3 45689988554 32222 2222333344778999999999999999999888 566
Q ss_pred HhhcCCcc---------------------------EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecC
Q 001070 180 SLLRGHTK---------------------------IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGP 232 (1165)
Q Consensus 180 ~llrGH~q---------------------------VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGs 232 (1165)
..|+||++ |||||+.-|.++..+-+|. .+|.+|.| |+++ ||-+||
T Consensus 194 ~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT-~~VTCvrw-----GG~g--liySgS 265 (480)
T KOG0271|consen 194 RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT-ASVTCVRW-----GGEG--LIYSGS 265 (480)
T ss_pred ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc-cceEEEEE-----cCCc--eEEecC
Confidence 69999999 9999999999999999884 69999999 3232 688999
Q ss_pred CCceEEEeEccC
Q 001070 233 LNREVKLWASAS 244 (1165)
Q Consensus 233 lnrtIKLW~~a~ 244 (1165)
.|||||||+...
T Consensus 266 ~DrtIkvw~a~d 277 (480)
T KOG0271|consen 266 QDRTIKVWRALD 277 (480)
T ss_pred CCceEEEEEccc
Confidence 999999999754
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.36 E-value=1.4e-12 Score=147.84 Aligned_cols=118 Identities=19% Similarity=0.327 Sum_probs=101.7
Q ss_pred cCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCCCceeEEecCCCCCCcce
Q 001070 156 NKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSKVAPLIILKPHGGQPVNS 212 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~g~pl~~lephdG~sV~S 212 (1165)
+|+||.|+.-|..=|+||+.| ..-.+.+||+. -||||.|+|.++..|++|- +.||+
T Consensus 272 sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~-k~I~~ 350 (459)
T KOG0272|consen 272 SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHI-KEILS 350 (459)
T ss_pred CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccc-cceee
Confidence 699999999999999999999 77779999999 7999999999999999884 59999
Q ss_pred eEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEE
Q 001070 213 AQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLF 292 (1165)
Q Consensus 213 VaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilL 292 (1165)
|+| +||| . .+++|+.|.++||||+-.. .|+.|+. +|...+.+|.+.|+.|..|+
T Consensus 351 V~f--sPNG---y-~lATgs~Dnt~kVWDLR~r------------~~ly~ip--------AH~nlVS~Vk~~p~~g~fL~ 404 (459)
T KOG0272|consen 351 VAF--SPNG---Y-HLATGSSDNTCKVWDLRMR------------SELYTIP--------AHSNLVSQVKYSPQEGYFLV 404 (459)
T ss_pred EeE--CCCc---e-EEeecCCCCcEEEeeeccc------------ccceecc--------cccchhhheEecccCCeEEE
Confidence 999 5777 2 4567999999999999554 7888888 58899999999998887777
Q ss_pred eccCCCcE
Q 001070 293 ANAKKNAI 300 (1165)
Q Consensus 293 an~~r~aI 300 (1165)
+..+-|.+
T Consensus 405 TasyD~t~ 412 (459)
T KOG0272|consen 405 TASYDNTV 412 (459)
T ss_pred EcccCcce
Confidence 66655543
No 5
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.29 E-value=1.2e-11 Score=144.75 Aligned_cols=126 Identities=17% Similarity=0.368 Sum_probs=101.0
Q ss_pred eeecCceEEEeecCCcEEEEeCc-c-hhhHhhcCCcc----------------------EEEeecCCCceeEEecCCCCC
Q 001070 153 IAVNKHYVCYGLKGGNVRVLNLN-T-ATRSLLRGHTK----------------------IKIWEDSKVAPLIILKPHGGQ 208 (1165)
Q Consensus 153 IAVn~~yIayG~kdg~IRVwdi~-t-~ir~llrGH~q----------------------VriWD~~~g~pl~~lephdG~ 208 (1165)
++-||+||++|+.|++|||||+. . .....|+||+. |||||+++|.++..|.+|++
T Consensus 211 fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~- 289 (456)
T KOG0266|consen 211 FSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD- 289 (456)
T ss_pred ECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC-
Confidence 45589999999999999999994 3 55568899999 99999999999999999975
Q ss_pred CcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcc--eEEEEeccCCCCCccccccEEEEEeecC
Q 001070 209 PVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWK--CTQTLDLKSSAKPRVEEAFFNQVVVLSQ 286 (1165)
Q Consensus 209 sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~--C~QTLe~~~s~~~~~~~aff~sV~~~p~ 286 (1165)
.|.+++| . +++.+|+ +|+.|++|+|||+.++ . |+.++...... . -+.+|..+|+
T Consensus 290 ~is~~~f--~---~d~~~l~-s~s~d~~i~vwd~~~~------------~~~~~~~~~~~~~~-----~-~~~~~~fsp~ 345 (456)
T KOG0266|consen 290 GISGLAF--S---PDGNLLV-SASYDGTIRVWDLETG------------SKLCLKLLSGAENS-----A-PVTSVQFSPN 345 (456)
T ss_pred ceEEEEE--C---CCCCEEE-EcCCCccEEEEECCCC------------ceeeeecccCCCCC-----C-ceeEEEECCC
Confidence 9999999 3 4445466 4688999999998554 5 88888863211 2 5778999999
Q ss_pred CcEEEEeccCCC-cEEEE
Q 001070 287 AGLLLFANAKKN-AIYSV 303 (1165)
Q Consensus 287 a~~ilLan~~r~-aIYal 303 (1165)
+.+|+.+...+. .+|-+
T Consensus 346 ~~~ll~~~~d~~~~~w~l 363 (456)
T KOG0266|consen 346 GKYLLSASLDRTLKLWDL 363 (456)
T ss_pred CcEEEEecCCCeEEEEEc
Confidence 999999888843 34433
No 6
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1e-11 Score=137.07 Aligned_cols=193 Identities=20% Similarity=0.308 Sum_probs=129.5
Q ss_pred ChHHHHHhhcCC--CCCCCCCCCCCCceee---cCCceEEe-cccCCCCCCCCCCcccccccccCCCcccccccEeeecC
Q 001070 84 AGPQILALLNNN--KSKHVGSTAPIYGKRV---FGDYVAYD-VDAVEEGREPTQQLEVNPITKYGSDPELLIGRQIAVNK 157 (1165)
Q Consensus 84 ~~~~~~~~l~~~--~~~~~~~~~p~~Gr~l---~g~~~~~d-Vd~~~~ge~~~pqlev~pIt~Y~sd~~~~~GR~IAVn~ 157 (1165)
|..|||+||+.. -|+|.+--|| |--+ .|-+..-| +|-+-| .+| +---||+..-. +---+++.||
T Consensus 156 ppSRLlaLlGQaLKWQqHQGLLPP--Gt~iDLFRGkAA~K~~~Ee~~P-----t~l--~r~IKFg~KSh-~EcA~FSPDg 225 (508)
T KOG0275|consen 156 PPSRLLALLGQALKWQQHQGLLPP--GTTIDLFRGKAAMKDQEEERYP-----TQL--ARSIKFGQKSH-VECARFSPDG 225 (508)
T ss_pred ChHHHHHHHHHHhhhHhhcCCCCC--CceeeeccchhhhhhhHhhhch-----HHh--hhheecccccc-hhheeeCCCC
Confidence 678999999765 3345432334 4333 55444333 222233 121 12224444332 2233489999
Q ss_pred ceEEEeecCCcEEEEeCcc-hhhHhhcCCcc------------------------------EEEeecCCCceeEEec-CC
Q 001070 158 HYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK------------------------------IKIWEDSKVAPLIILK-PH 205 (1165)
Q Consensus 158 ~yIayG~kdg~IRVwdi~t-~ir~llrGH~q------------------------------VriWD~~~g~pl~~le-ph 205 (1165)
.||++|+.||-|.|||-.+ .+|.=|+=..| ||||.+++|.|+++|+ .|
T Consensus 226 qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAH 305 (508)
T KOG0275|consen 226 QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAH 305 (508)
T ss_pred ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhh
Confidence 9999999999999999998 88886665555 9999999999999998 44
Q ss_pred CCCCcceeEeecC-------------------------------------CCCCCceEEEeecCCCceEEEeEccCcCCC
Q 001070 206 GGQPVNSAQYLTA-------------------------------------PNQAGHIILVTAGPLNREVKLWASASEEGW 248 (1165)
Q Consensus 206 dG~sV~SVaFl~a-------------------------------------P~~~d~~~lvtsGslnrtIKLW~~a~~~~~ 248 (1165)
.+-|.++.|.-. -...|+.++| ++|.|.+||+|+.-+
T Consensus 306 -tkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~Kt---- 379 (508)
T KOG0275|consen 306 -TKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHII-SASSDGTVKVWHGKT---- 379 (508)
T ss_pred -ccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEE-EecCCccEEEecCcc----
Confidence 345777777210 0013344345 799999999999744
Q ss_pred CCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEee
Q 001070 249 SLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLG 306 (1165)
Q Consensus 249 ~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~ 306 (1165)
..|++||.- .+.+.-+|+|.+.|-.-=-++-.-+.|.||.+.+.
T Consensus 380 --------teC~~Tfk~------~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 380 --------TECLSTFKP------LGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred --------hhhhhhccC------CCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence 499999984 24677899999999876434444567999999875
No 7
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.25 E-value=3.5e-11 Score=134.81 Aligned_cols=116 Identities=22% Similarity=0.356 Sum_probs=100.5
Q ss_pred cccEeeec--CceEEEeecCCcEEEEeCcc-hhhHhhcCCcc-------------------------------------E
Q 001070 149 IGRQIAVN--KHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK-------------------------------------I 188 (1165)
Q Consensus 149 ~GR~IAVn--~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q-------------------------------------V 188 (1165)
.-|.|+|| |..||++..|.++|||-.++ ..+.+||+|+. |
T Consensus 237 wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI 316 (406)
T KOG0295|consen 237 WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI 316 (406)
T ss_pred hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceE
Confidence 56889995 88999999999999999999 66779999999 9
Q ss_pred EEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCC
Q 001070 189 KIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSS 268 (1165)
Q Consensus 189 riWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s 268 (1165)
||||+.+|.+|-++.+| +++|.+++|. |+|+||+ |..-|++|++||+... .|..|++
T Consensus 317 k~wdv~tg~cL~tL~gh-dnwVr~~af~-----p~Gkyi~-ScaDDktlrvwdl~~~------------~cmk~~~---- 373 (406)
T KOG0295|consen 317 KIWDVSTGMCLFTLVGH-DNWVRGVAFS-----PGGKYIL-SCADDKTLRVWDLKNL------------QCMKTLE---- 373 (406)
T ss_pred EEEeccCCeEEEEEecc-cceeeeeEEc-----CCCeEEE-EEecCCcEEEEEeccc------------eeeeccC----
Confidence 99999999999999999 4799999993 5667788 6779999999999555 9999999
Q ss_pred CCCccccccEEEEEeecCCcEEE
Q 001070 269 AKPRVEEAFFNQVVVLSQAGLLL 291 (1165)
Q Consensus 269 ~~~~~~~aff~sV~~~p~a~~il 291 (1165)
.|.-|++.+.++-.+-+++
T Consensus 374 ----ah~hfvt~lDfh~~~p~Vv 392 (406)
T KOG0295|consen 374 ----AHEHFVTSLDFHKTAPYVV 392 (406)
T ss_pred ----CCcceeEEEecCCCCceEE
Confidence 3788998887776666554
No 8
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.20 E-value=4.8e-11 Score=133.46 Aligned_cols=151 Identities=23% Similarity=0.388 Sum_probs=110.9
Q ss_pred cEeeec--CceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------------------------
Q 001070 151 RQIAVN--KHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK---------------------------------------- 187 (1165)
Q Consensus 151 R~IAVn--~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q---------------------------------------- 187 (1165)
|-|||| ..|+|+|+-|++|+|||++| .++..|.||--
T Consensus 155 r~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGH 234 (460)
T KOG0285|consen 155 RSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGH 234 (460)
T ss_pred EEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccc
Confidence 568887 68999999999999999999 88889999976
Q ss_pred ------------------------EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEcc
Q 001070 188 ------------------------IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASA 243 (1165)
Q Consensus 188 ------------------------VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a 243 (1165)
+||||+|+..+|+++.+|++ +|.+|.| .|-.|. |.+||-|.||+|||+.
T Consensus 235 lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~-~V~~V~~--~~~dpq----vit~S~D~tvrlWDl~ 307 (460)
T KOG0285|consen 235 LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN-PVASVMC--QPTDPQ----VITGSHDSTVRLWDLR 307 (460)
T ss_pred cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC-cceeEEe--ecCCCc----eEEecCCceEEEeeec
Confidence 99999999999999999974 9999999 444444 4479999999999997
Q ss_pred CcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEeecCCCccccccccccccc
Q 001070 244 SEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGYGNNSAATRIDYIAEFT 323 (1165)
Q Consensus 244 ~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~g~~~~~~r~dyiaeF~ 323 (1165)
.+ +-.-||. .|+.-+--++++|.-. ++|.+..+.|-..-+-.| .++.+++.-
T Consensus 308 ag------------kt~~tlt--------~hkksvral~lhP~e~--~fASas~dnik~w~~p~g-----~f~~nlsgh- 359 (460)
T KOG0285|consen 308 AG------------KTMITLT--------HHKKSVRALCLHPKEN--LFASASPDNIKQWKLPEG-----EFLQNLSGH- 359 (460)
T ss_pred cC------------ceeEeee--------cccceeeEEecCCchh--hhhccCCccceeccCCcc-----chhhccccc-
Confidence 66 5555665 3555555666777643 445666666665554432 133332221
Q ss_pred cccceeeeeeccCC
Q 001070 324 VTMPVLSFTGTIDP 337 (1165)
Q Consensus 324 v~~PILSft~~~d~ 337 (1165)
.-=|+++.+.+|+
T Consensus 360 -~~iintl~~nsD~ 372 (460)
T KOG0285|consen 360 -NAIINTLSVNSDG 372 (460)
T ss_pred -cceeeeeeeccCc
Confidence 1246777888777
No 9
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.18 E-value=1.9e-10 Score=134.81 Aligned_cols=129 Identities=22% Similarity=0.367 Sum_probs=108.3
Q ss_pred eeecCceEEEeecCCcEEEEeCcc-h--hhHhhcCCcc----------------------EEEeec-CCCceeEEecCCC
Q 001070 153 IAVNKHYVCYGLKGGNVRVLNLNT-A--TRSLLRGHTK----------------------IKIWED-SKVAPLIILKPHG 206 (1165)
Q Consensus 153 IAVn~~yIayG~kdg~IRVwdi~t-~--ir~llrGH~q----------------------VriWD~-~~g~pl~~lephd 206 (1165)
++-||+||+++.-|+.||+|+..+ . ....|.||.. |||||. ..+..+.++++|.
T Consensus 167 fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~ 246 (456)
T KOG0266|consen 167 FSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHS 246 (456)
T ss_pred EcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCC
Confidence 677999999999999999999966 4 4445589988 999999 5568899999995
Q ss_pred CCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecC
Q 001070 207 GQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQ 286 (1165)
Q Consensus 207 G~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~ 286 (1165)
..||+++| +|.+ . +|.||+.|++|||||+.+ ++|+.+|.+ |++.+..+++.++
T Consensus 247 -~~v~~~~f--~p~g-~---~i~Sgs~D~tvriWd~~~------------~~~~~~l~~--------hs~~is~~~f~~d 299 (456)
T KOG0266|consen 247 -TYVTSVAF--SPDG-N---LLVSGSDDGTVRIWDVRT------------GECVRKLKG--------HSDGISGLAFSPD 299 (456)
T ss_pred -CceEEEEe--cCCC-C---EEEEecCCCcEEEEeccC------------CeEEEeeec--------cCCceEEEEECCC
Confidence 59999999 5666 4 788999999999999844 499999995 7889999999999
Q ss_pred CcEEEEeccCCCcEEEEEeecCC
Q 001070 287 AGLLLFANAKKNAIYSVHLGYGN 309 (1165)
Q Consensus 287 a~~ilLan~~r~aIYalhl~~g~ 309 (1165)
+++|+.+.. ...|.+--+..+.
T Consensus 300 ~~~l~s~s~-d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 300 GNLLVSASY-DGTIRVWDLETGS 321 (456)
T ss_pred CCEEEEcCC-CccEEEEECCCCc
Confidence 999999954 6777666666544
No 10
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.17 E-value=5.7e-11 Score=142.43 Aligned_cols=131 Identities=19% Similarity=0.372 Sum_probs=107.5
Q ss_pred ccCCCcccccccEeeecCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc-------------------------------
Q 001070 140 KYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK------------------------------- 187 (1165)
Q Consensus 140 ~Y~sd~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q------------------------------- 187 (1165)
.||.. +-+.|-.++.+.+||.+++||+.||+|+..| ..--..+||--
T Consensus 447 L~GH~-GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 447 LYGHS-GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN 525 (707)
T ss_pred eecCC-CceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence 44433 4566888999999999999999999999999 44448889987
Q ss_pred ---------------------------------EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCC
Q 001070 188 ---------------------------------IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLN 234 (1165)
Q Consensus 188 ---------------------------------VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGsln 234 (1165)
||+||+.+|..|++|.+|.| +|.+|+|. | ++++|+ +|+-|
T Consensus 526 ~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~-~V~al~~S--p---~Gr~La-Sg~ed 598 (707)
T KOG0263|consen 526 KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG-PVTALAFS--P---CGRYLA-SGDED 598 (707)
T ss_pred CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC-ceEEEEEc--C---CCceEe-ecccC
Confidence 99999999999999998865 99999994 5 556576 69999
Q ss_pred ceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCC
Q 001070 235 REVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKN 298 (1165)
Q Consensus 235 rtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~ 298 (1165)
+.|||||++++ +-+.+|. +|.+-+.++.+..+++.|+.+.+...
T Consensus 599 ~~I~iWDl~~~------------~~v~~l~--------~Ht~ti~SlsFS~dg~vLasgg~Dns 642 (707)
T KOG0263|consen 599 GLIKIWDLANG------------SLVKQLK--------GHTGTIYSLSFSRDGNVLASGGADNS 642 (707)
T ss_pred CcEEEEEcCCC------------cchhhhh--------cccCceeEEEEecCCCEEEecCCCCe
Confidence 99999999776 3444454 47778889999999998888877643
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.13 E-value=6.5e-10 Score=121.70 Aligned_cols=175 Identities=17% Similarity=0.252 Sum_probs=118.6
Q ss_pred eeecCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCCCceeEEecCCCCCC
Q 001070 153 IAVNKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSKVAPLIILKPHGGQP 209 (1165)
Q Consensus 153 IAVn~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~g~pl~~lephdG~s 209 (1165)
+.-||.|-.+|..||.+|+||+++ .-+..|.||+. |++|++-.+|-+.+-+...-++
T Consensus 71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~W 150 (315)
T KOG0279|consen 71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREW 150 (315)
T ss_pred EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCc
Confidence 445799999999999999999999 77779999998 9999998877666665322359
Q ss_pred cceeEeecCCCCCCceEEEeecCCCceEEEeEccC--------------------cCCCCCCCCCC----------Ccce
Q 001070 210 VNSAQYLTAPNQAGHIILVTAGPLNREVKLWASAS--------------------EEGWSLPTHAE----------SWKC 259 (1165)
Q Consensus 210 V~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~--------------------~~~~~~~~~~~----------~w~C 259 (1165)
|.+|.| .|+.... .|.+++-||++|+||+.+ ..|-+.-++++ ..+|
T Consensus 151 Vscvrf--sP~~~~p--~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ 226 (315)
T KOG0279|consen 151 VSCVRF--SPNESNP--IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN 226 (315)
T ss_pred EEEEEE--cCCCCCc--EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce
Confidence 999999 4664332 366899999999999954 11222222221 3568
Q ss_pred EEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEeecCCCccccccccccccccccceeeeeeccCCCC
Q 001070 260 TQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGYGNNSAATRIDYIAEFTVTMPVLSFTGTIDPPS 339 (1165)
Q Consensus 260 ~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~g~~~~~~r~dyiaeF~v~~PILSft~~~d~~g 339 (1165)
+++|+ +.+.++++++.|..-||.+|-+.. |-...++-+.-=...+.|-+..=.-.-.+.++.-++-.||
T Consensus 227 lysl~---------a~~~v~sl~fspnrywL~~at~~s--IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG 295 (315)
T KOG0279|consen 227 LYSLE---------AFDIVNSLCFSPNRYWLCAATATS--IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADG 295 (315)
T ss_pred eEecc---------CCCeEeeEEecCCceeEeeccCCc--eEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCC
Confidence 88877 578899999999999988877665 4444444433323445555555122222233333344455
Q ss_pred cce
Q 001070 340 EHI 342 (1165)
Q Consensus 340 e~~ 342 (1165)
...
T Consensus 296 ~tL 298 (315)
T KOG0279|consen 296 QTL 298 (315)
T ss_pred cEE
Confidence 543
No 12
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.12 E-value=2.1e-10 Score=136.91 Aligned_cols=143 Identities=21% Similarity=0.373 Sum_probs=110.3
Q ss_pred ccccCCCcccccccE---------ee--ecCceEEEeecCCcEEEEeCcchhhH-hhcCCcc------------------
Q 001070 138 ITKYGSDPELLIGRQ---------IA--VNKHYVCYGLKGGNVRVLNLNTATRS-LLRGHTK------------------ 187 (1165)
Q Consensus 138 It~Y~sd~~~~~GR~---------IA--Vn~~yIayG~kdg~IRVwdi~t~ir~-llrGH~q------------------ 187 (1165)
|-+|+|--..++=.| ++ -||.|||||++||.|||||+.+..|- +|.-|+-
T Consensus 332 LlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssS 411 (893)
T KOG0291|consen 332 LLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSS 411 (893)
T ss_pred EEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEee
Confidence 556777655544333 23 37999999999999999999995555 8998887
Q ss_pred ------------------------------------------------EEEeecCCCceeEEecCCCCCCcceeEeecCC
Q 001070 188 ------------------------------------------------IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAP 219 (1165)
Q Consensus 188 ------------------------------------------------VriWD~~~g~pl~~lephdG~sV~SVaFl~aP 219 (1165)
|.||++++|..+.+|.+|.| +|.+++| .|
T Consensus 412 LDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEg-PVs~l~f--~~ 488 (893)
T KOG0291|consen 412 LDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEG-PVSGLSF--SP 488 (893)
T ss_pred cCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCC-cceeeEE--cc
Confidence 88999999999999999988 9999999 45
Q ss_pred CCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccC-CC
Q 001070 220 NQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAK-KN 298 (1165)
Q Consensus 220 ~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~-r~ 298 (1165)
++. +++|||-|+|||||++-.. |.-+-||+.. ++ ++.|.+.|+|.=|-+|-.. --
T Consensus 489 ~~~----~LaS~SWDkTVRiW~if~s-----------~~~vEtl~i~-------sd--vl~vsfrPdG~elaVaTldgqI 544 (893)
T KOG0291|consen 489 DGS----LLASGSWDKTVRIWDIFSS-----------SGTVETLEIR-------SD--VLAVSFRPDGKELAVATLDGQI 544 (893)
T ss_pred ccC----eEEeccccceEEEEEeecc-----------CceeeeEeec-------cc--eeEEEEcCCCCeEEEEEecceE
Confidence 553 5668999999999998443 4556778752 23 3478889999988887776 44
Q ss_pred cEEEEEeec
Q 001070 299 AIYSVHLGY 307 (1165)
Q Consensus 299 aIYalhl~~ 307 (1165)
+||-+..++
T Consensus 545 tf~d~~~~~ 553 (893)
T KOG0291|consen 545 TFFDIKEAV 553 (893)
T ss_pred EEEEhhhce
Confidence 566555554
No 13
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.08 E-value=2.8e-10 Score=128.26 Aligned_cols=87 Identities=17% Similarity=0.264 Sum_probs=67.2
Q ss_pred EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccC
Q 001070 188 IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKS 267 (1165)
Q Consensus 188 VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~ 267 (1165)
||+||-++|.-|..|++|=+ +||-|||. .|-+ ||+|||.|.|||+|++.+. +-.+.|.
T Consensus 391 VkLW~g~tGk~lasfRGHv~-~VYqvaws-----aDsR-LlVS~SkDsTLKvw~V~tk------------Kl~~DLp--- 448 (480)
T KOG0271|consen 391 VKLWDGRTGKFLASFRGHVA-AVYQVAWS-----ADSR-LLVSGSKDSTLKVWDVRTK------------KLKQDLP--- 448 (480)
T ss_pred eeeeeCCCcchhhhhhhccc-eeEEEEec-----cCcc-EEEEcCCCceEEEEEeeee------------eecccCC---
Confidence 99999999999999998854 99999995 5556 6779999999999998554 5556666
Q ss_pred CCCCccccccEEEEEeecCCcEEEEeccCCCcEEEE
Q 001070 268 SAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSV 303 (1165)
Q Consensus 268 s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYal 303 (1165)
||+|=+.-|--.|||+.|. ...++-+|.+
T Consensus 449 -----Gh~DEVf~vDwspDG~rV~--sggkdkv~~l 477 (480)
T KOG0271|consen 449 -----GHADEVFAVDWSPDGQRVA--SGGKDKVLRL 477 (480)
T ss_pred -----CCCceEEEEEecCCCceee--cCCCceEEEe
Confidence 4666555889999999764 3344444443
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.05 E-value=9.8e-10 Score=123.43 Aligned_cols=153 Identities=16% Similarity=0.264 Sum_probs=119.0
Q ss_pred ecCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCCCceeEEecCCCCCCcc
Q 001070 155 VNKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSKVAPLIILKPHGGQPVN 211 (1165)
Q Consensus 155 Vn~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~g~pl~~lephdG~sV~ 211 (1165)
..|.||++..+|..|+.||++| --..+|.||.+ ||+|=+.++.+...|+.|. ++|-
T Consensus 203 P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hE-h~vE 281 (406)
T KOG0295|consen 203 PLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHE-HPVE 281 (406)
T ss_pred ecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccc-cceE
Confidence 3589999999999999999999 44459999999 8899888888888899884 7999
Q ss_pred eeEeec----------CCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEE
Q 001070 212 SAQYLT----------APNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQV 281 (1165)
Q Consensus 212 SVaFl~----------aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV 281 (1165)
+++|.. .|++..+++|. +||.||+|||||..++ .|+-||- +|+..+-.+
T Consensus 282 ci~wap~~~~~~i~~at~~~~~~~~l~-s~SrDktIk~wdv~tg------------~cL~tL~--------ghdnwVr~~ 340 (406)
T KOG0295|consen 282 CIAWAPESSYPSISEATGSTNGGQVLG-SGSRDKTIKIWDVSTG------------MCLFTLV--------GHDNWVRGV 340 (406)
T ss_pred EEEecccccCcchhhccCCCCCccEEE-eecccceEEEEeccCC------------eEEEEEe--------cccceeeee
Confidence 999933 12333456566 7999999999999666 9999999 488999999
Q ss_pred EeecCCcEEE-EeccCCCcEEEEEeecC--CCcccccccccccccccccee
Q 001070 282 VVLSQAGLLL-FANAKKNAIYSVHLGYG--NNSAATRIDYIAEFTVTMPVL 329 (1165)
Q Consensus 282 ~~~p~a~~il-Lan~~r~aIYalhl~~g--~~~~~~r~dyiaeF~v~~PIL 329 (1165)
+++|.|+||+ .||-+--.||-+.-..- --++.++|..+-+|-.+.|..
T Consensus 341 af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~V 391 (406)
T KOG0295|consen 341 AFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYV 391 (406)
T ss_pred EEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceE
Confidence 9999999876 34444444443321110 012678999999999999943
No 15
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=3.7e-10 Score=132.77 Aligned_cols=120 Identities=24% Similarity=0.414 Sum_probs=102.4
Q ss_pred CCcccccccEeeec--CceEEEeecCCcEEEEeCcc--hhhHhhcCCcc-----------------------EEEeecCC
Q 001070 143 SDPELLIGRQIAVN--KHYVCYGLKGGNVRVLNLNT--ATRSLLRGHTK-----------------------IKIWEDSK 195 (1165)
Q Consensus 143 sd~~~~~GR~IAVn--~~yIayG~kdg~IRVwdi~t--~ir~llrGH~q-----------------------VriWD~~~ 195 (1165)
+|| .|-|||. .-|+.+++.|-+|+.||-.. +...+|.||++ ||||..-.
T Consensus 97 ~Dy----IR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs 172 (794)
T KOG0276|consen 97 SDY----IRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS 172 (794)
T ss_pred ccc----eeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC
Confidence 566 8999997 56999999999999999998 67779999999 99999988
Q ss_pred CceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCcccc
Q 001070 196 VAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEE 275 (1165)
Q Consensus 196 g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~ 275 (1165)
-.|.-+|++|+ .-|++|.|++.+|.|. || +|+-|++||+||..+. .|+|||++ |-
T Consensus 173 ~~~nfTl~gHe-kGVN~Vdyy~~gdkpy---lI-sgaDD~tiKvWDyQtk------------~CV~TLeG--------Ht 227 (794)
T KOG0276|consen 173 PHPNFTLEGHE-KGVNCVDYYTGGDKPY---LI-SGADDLTIKVWDYQTK------------SCVQTLEG--------HT 227 (794)
T ss_pred CCCceeeeccc-cCcceEEeccCCCcce---EE-ecCCCceEEEeecchH------------HHHHHhhc--------cc
Confidence 88899999885 4799999998888877 77 5999999999998776 99999996 44
Q ss_pred ccEEEEEeecCCcEEE
Q 001070 276 AFFNQVVVLSQAGLLL 291 (1165)
Q Consensus 276 aff~sV~~~p~a~~il 291 (1165)
.=++.|..+|.=-+|+
T Consensus 228 ~Nvs~v~fhp~lpiii 243 (794)
T KOG0276|consen 228 NNVSFVFFHPELPIII 243 (794)
T ss_pred ccceEEEecCCCcEEE
Confidence 5556667777766654
No 16
>PTZ00421 coronin; Provisional
Probab=99.02 E-value=5.9e-09 Score=124.03 Aligned_cols=112 Identities=13% Similarity=0.265 Sum_probs=84.9
Q ss_pred cCceEEEeecCCcEEEEeCcch--------hhHhhcCCcc-----------------------EEEeecCCCceeEEecC
Q 001070 156 NKHYVCYGLKGGNVRVLNLNTA--------TRSLLRGHTK-----------------------IKIWEDSKVAPLIILKP 204 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t~--------ir~llrGH~q-----------------------VriWD~~~g~pl~~lep 204 (1165)
|+++|++|..||.|||||+.+. ....|.||+. |||||++++.++..++.
T Consensus 87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~ 166 (493)
T PTZ00421 87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC 166 (493)
T ss_pred CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC
Confidence 5789999999999999999762 1236789976 99999999999999998
Q ss_pred CCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEee
Q 001070 205 HGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVL 284 (1165)
Q Consensus 205 hdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~ 284 (1165)
|. ..|++++| +|++ . ++++|+.|++|+|||+..+ +++.++.++.. .....++..
T Consensus 167 h~-~~V~sla~--spdG---~-lLatgs~Dg~IrIwD~rsg------------~~v~tl~~H~~-------~~~~~~~w~ 220 (493)
T PTZ00421 167 HS-DQITSLEW--NLDG---S-LLCTTSKDKKLNIIDPRDG------------TIVSSVEAHAS-------AKSQRCLWA 220 (493)
T ss_pred CC-CceEEEEE--ECCC---C-EEEEecCCCEEEEEECCCC------------cEEEEEecCCC-------CcceEEEEc
Confidence 84 58999999 4554 4 3446889999999998443 78888876432 122345556
Q ss_pred cCCcEEEEe
Q 001070 285 SQAGLLLFA 293 (1165)
Q Consensus 285 p~a~~ilLa 293 (1165)
++.++|+.+
T Consensus 221 ~~~~~ivt~ 229 (493)
T PTZ00421 221 KRKDLIITL 229 (493)
T ss_pred CCCCeEEEE
Confidence 777766654
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.01 E-value=7e-10 Score=133.28 Aligned_cols=86 Identities=27% Similarity=0.476 Sum_probs=76.1
Q ss_pred eeecCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCCCceeEEecCCCCCC
Q 001070 153 IAVNKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSKVAPLIILKPHGGQP 209 (1165)
Q Consensus 153 IAVn~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~g~pl~~lephdG~s 209 (1165)
+-.|..|++||+-|+++|+||+.+ ..+.+|.||.. |+|||..+|.+|..+.+|.| .
T Consensus 543 FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~-t 621 (707)
T KOG0263|consen 543 FHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTG-T 621 (707)
T ss_pred ECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccC-c
Confidence 444799999999999999999999 77889999999 99999999999999999954 9
Q ss_pred cceeEeecCCCCCCceEEEeecCCCceEEEeEccCc
Q 001070 210 VNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASE 245 (1165)
Q Consensus 210 V~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~ 245 (1165)
|||+.|. .|+.+|+ +|+.|.+|++||+...
T Consensus 622 i~SlsFS-----~dg~vLa-sgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 622 IYSLSFS-----RDGNVLA-SGGADNSVRLWDLTKV 651 (707)
T ss_pred eeEEEEe-----cCCCEEE-ecCCCCeEEEEEchhh
Confidence 9999994 6666566 6889999999998655
No 18
>PTZ00421 coronin; Provisional
Probab=98.98 E-value=6.4e-09 Score=123.72 Aligned_cols=132 Identities=13% Similarity=0.202 Sum_probs=98.7
Q ss_pred eeec---CceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCCCceeEEecCCC
Q 001070 153 IAVN---KHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSKVAPLIILKPHG 206 (1165)
Q Consensus 153 IAVn---~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~g~pl~~lephd 206 (1165)
|+.+ +.+|++|..||.|||||+.+ .....|.+|.. |||||.+++.++..+.+|.
T Consensus 131 l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~ 210 (493)
T PTZ00421 131 VSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA 210 (493)
T ss_pred EEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCC
Confidence 5554 46999999999999999998 55667889986 9999999999999999998
Q ss_pred CCCcceeEeecCCCCCCceEEEeec---CCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEe
Q 001070 207 GQPVNSAQYLTAPNQAGHIILVTAG---PLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVV 283 (1165)
Q Consensus 207 G~sV~SVaFl~aP~~~d~~~lvtsG---slnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~ 283 (1165)
|..+..+.|. |++ ..++++| +.|++|+|||+... ..+..++.+. +....+...+
T Consensus 211 ~~~~~~~~w~--~~~---~~ivt~G~s~s~Dr~VklWDlr~~-----------~~p~~~~~~d-------~~~~~~~~~~ 267 (493)
T PTZ00421 211 SAKSQRCLWA--KRK---DLIITLGCSKSQQRQIMLWDTRKM-----------ASPYSTVDLD-------QSSALFIPFF 267 (493)
T ss_pred CCcceEEEEc--CCC---CeEEEEecCCCCCCeEEEEeCCCC-----------CCceeEeccC-------CCCceEEEEE
Confidence 7666677884 433 2356555 56999999998432 1455555542 1223445678
Q ss_pred ecCCcEEEEeccCCCcEEEEEeec
Q 001070 284 LSQAGLLLFANAKKNAIYSVHLGY 307 (1165)
Q Consensus 284 ~p~a~~ilLan~~r~aIYalhl~~ 307 (1165)
++++++|+++...-..|+...+..
T Consensus 268 d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 268 DEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred cCCCCEEEEEEeCCCeEEEEEeeC
Confidence 999999999876567888888864
No 19
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.97 E-value=4.3e-09 Score=113.36 Aligned_cols=147 Identities=20% Similarity=0.296 Sum_probs=109.7
Q ss_pred eeecCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCCCceeEEecCCCCCC
Q 001070 153 IAVNKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSKVAPLIILKPHGGQP 209 (1165)
Q Consensus 153 IAVn~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~g~pl~~lephdG~s 209 (1165)
.-|||+|..+..+|++||+||... .+-....||.. |.+||+.+|.-+++|++|+| -
T Consensus 25 yN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~a-q 103 (307)
T KOG0316|consen 25 YNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLA-Q 103 (307)
T ss_pred EccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccc-e
Confidence 446899999999999999999998 77778889887 99999999999999999976 7
Q ss_pred cceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcE
Q 001070 210 VNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGL 289 (1165)
Q Consensus 210 V~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ 289 (1165)
|+.|.| .+---+|.||+.|++|++|||-+. +.+-+|+|. .-.+=+.+|.+. ...
T Consensus 104 VNtV~f------NeesSVv~SgsfD~s~r~wDCRS~----------s~ePiQild--------ea~D~V~Si~v~--~he 157 (307)
T KOG0316|consen 104 VNTVRF------NEESSVVASGSFDSSVRLWDCRSR----------SFEPIQILD--------EAKDGVSSIDVA--EHE 157 (307)
T ss_pred eeEEEe------cCcceEEEeccccceeEEEEcccC----------CCCccchhh--------hhcCceeEEEec--ccE
Confidence 999999 222226779999999999999553 457889887 234556666443 344
Q ss_pred EEEeccCCC-cEEEEEeecCCCccccccccccccccccceeeeeeccCC
Q 001070 290 LLFANAKKN-AIYSVHLGYGNNSAATRIDYIAEFTVTMPVLSFTGTIDP 337 (1165)
Q Consensus 290 ilLan~~r~-aIYalhl~~g~~~~~~r~dyiaeF~v~~PILSft~~~d~ 337 (1165)
||-..+..+ -.|-|..+. ..-|| +.+||-|.....|+
T Consensus 158 IvaGS~DGtvRtydiR~G~------l~sDy-----~g~pit~vs~s~d~ 195 (307)
T KOG0316|consen 158 IVAGSVDGTVRTYDIRKGT------LSSDY-----FGHPITSVSFSKDG 195 (307)
T ss_pred EEeeccCCcEEEEEeecce------eehhh-----cCCcceeEEecCCC
Confidence 554444433 245555442 24456 46899888877766
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.96 E-value=3.3e-09 Score=116.25 Aligned_cols=144 Identities=15% Similarity=0.269 Sum_probs=109.3
Q ss_pred CcccccccccCCCcccccccEeee---cCceEEEeecCCcEEEEeCcc------hhhHhhcCCcc---------------
Q 001070 132 QLEVNPITKYGSDPELLIGRQIAV---NKHYVCYGLKGGNVRVLNLNT------ATRSLLRGHTK--------------- 187 (1165)
Q Consensus 132 qlev~pIt~Y~sd~~~~~GR~IAV---n~~yIayG~kdg~IRVwdi~t------~ir~llrGH~q--------------- 187 (1165)
+|++.-+-+|..+- -.+||+ |..-|..+.+|+.|-+|+.+. .....|+||++
T Consensus 4 ~l~l~~tl~gh~d~----Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~al 79 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDW----VTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFAL 79 (315)
T ss_pred hheeeeeecCCCce----EEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEE
Confidence 56666666666665 333443 456777899999999999986 33458999999
Q ss_pred -------EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceE
Q 001070 188 -------IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCT 260 (1165)
Q Consensus 188 -------VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~ 260 (1165)
+|+||..+|.+-++|++| +.-|.||+| +||..- |.+||-|||||||+. .+.|.
T Consensus 80 S~swD~~lrlWDl~~g~~t~~f~GH-~~dVlsva~--s~dn~q----ivSGSrDkTiklwnt-------------~g~ck 139 (315)
T KOG0279|consen 80 SASWDGTLRLWDLATGESTRRFVGH-TKDVLSVAF--STDNRQ----IVSGSRDKTIKLWNT-------------LGVCK 139 (315)
T ss_pred eccccceEEEEEecCCcEEEEEEec-CCceEEEEe--cCCCce----eecCCCcceeeeeee-------------cccEE
Confidence 999999999999999999 679999999 455533 457999999999995 45899
Q ss_pred EEEeccCCCCCccccccEEEEEeecCC-cEEEEeccCCCcEEEEEe
Q 001070 261 QTLDLKSSAKPRVEEAFFNQVVVLSQA-GLLLFANAKKNAIYSVHL 305 (1165)
Q Consensus 261 QTLe~~~s~~~~~~~aff~sV~~~p~a-~~ilLan~~r~aIYalhl 305 (1165)
-|+.-. .|.+.++.|.++|.. ..++++.---..+-+--+
T Consensus 140 ~t~~~~------~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl 179 (315)
T KOG0279|consen 140 YTIHED------SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNL 179 (315)
T ss_pred EEEecC------CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEcc
Confidence 998742 237899999999996 566665554445444433
No 21
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=98.96 E-value=7.2e-10 Score=132.82 Aligned_cols=119 Identities=25% Similarity=0.428 Sum_probs=93.0
Q ss_pred ccEeeecCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc--------------------EEEeecCCCceeEEecCCCCC
Q 001070 150 GRQIAVNKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK--------------------IKIWEDSKVAPLIILKPHGGQ 208 (1165)
Q Consensus 150 GR~IAVn~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q--------------------VriWD~~~g~pl~~lephdG~ 208 (1165)
||-|...+.++..|+.|.+|||||+.+ +.-+||+||+. |+|||.+++.+|..+++|.|
T Consensus 294 v~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~- 372 (537)
T KOG0274|consen 294 VRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG- 372 (537)
T ss_pred EEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcc-
Confidence 666777888999999999999999998 77779999988 99999999999999999975
Q ss_pred CcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCc
Q 001070 209 PVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAG 288 (1165)
Q Consensus 209 sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~ 288 (1165)
.||+++|- .+ . .+.+|+.|++||+||+... ++|++||.+ |..+++.. .....
T Consensus 373 ~V~sl~~~--~~----~-~~~Sgs~D~~IkvWdl~~~-----------~~c~~tl~~--------h~~~v~~l--~~~~~ 424 (537)
T KOG0274|consen 373 RVYSLIVD--SE----N-RLLSGSLDTTIKVWDLRTK-----------RKCIHTLQG--------HTSLVSSL--LLRDN 424 (537)
T ss_pred eEEEEEec--Cc----c-eEEeeeeccceEeecCCch-----------hhhhhhhcC--------Cccccccc--ccccc
Confidence 99999882 21 2 3558999999999998443 299999996 55555333 34455
Q ss_pred EEEEeccCC
Q 001070 289 LLLFANAKK 297 (1165)
Q Consensus 289 ~ilLan~~r 297 (1165)
+|+=+.+.+
T Consensus 425 ~Lvs~~aD~ 433 (537)
T KOG0274|consen 425 FLVSSSADG 433 (537)
T ss_pred eeEeccccc
Confidence 555554444
No 22
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.95 E-value=6e-10 Score=124.36 Aligned_cols=105 Identities=24% Similarity=0.425 Sum_probs=85.9
Q ss_pred cccEeeec-----CceEEEeecCCcEEEEeCcc-hhhHhhcCCcc--------------------EEEeecCCCceeEEe
Q 001070 149 IGRQIAVN-----KHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK--------------------IKIWEDSKVAPLIIL 202 (1165)
Q Consensus 149 ~GR~IAVn-----~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q--------------------VriWD~~~g~pl~~l 202 (1165)
.|..-||| .|||++.+.|++|||||+.| ..-.+|.||.- ||+||+..|.+|++|
T Consensus 317 vGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvL 396 (499)
T KOG0281|consen 317 VGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVL 396 (499)
T ss_pred hhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHH
Confidence 46666775 89999999999999999999 66668899987 999999999999999
Q ss_pred cCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEec
Q 001070 203 KPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDL 265 (1165)
Q Consensus 203 ephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~ 265 (1165)
++|+ +-|.++-| -+.+ |+||-.|.+||+||+..+. -|-...+-.|+.|+.=
T Consensus 397 eGHE-eLvRciRF------d~kr--IVSGaYDGkikvWdl~aal---dpra~~~~~Cl~~lv~ 447 (499)
T KOG0281|consen 397 EGHE-ELVRCIRF------DNKR--IVSGAYDGKIKVWDLQAAL---DPRAPASTLCLRTLVE 447 (499)
T ss_pred hchH-Hhhhheee------cCce--eeeccccceEEEEeccccc---CCcccccchHHHhhhh
Confidence 9984 69999999 3434 5689999999999997763 2333344578888763
No 23
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.91 E-value=2.5e-09 Score=127.91 Aligned_cols=180 Identities=21% Similarity=0.341 Sum_probs=130.6
Q ss_pred eeecCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCCCceeEEecCCCCCC
Q 001070 153 IAVNKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSKVAPLIILKPHGGQP 209 (1165)
Q Consensus 153 IAVn~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~g~pl~~lephdG~s 209 (1165)
||-|++.||||+.|++.+||+... .+-..|+||+. ||||-+.+..++.+|++|+ -+
T Consensus 471 ia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~-~a 549 (775)
T KOG0319|consen 471 IAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHT-SA 549 (775)
T ss_pred ecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCcc-ce
Confidence 666899999999999999999997 78889999998 9999999999999999885 49
Q ss_pred cceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcE
Q 001070 210 VNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGL 289 (1165)
Q Consensus 210 V~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ 289 (1165)
|..+.|+ .++.+|| |+..|..||||++.+. .|.+||.. |.+=+-..+..+...+
T Consensus 550 Vlra~F~-----~~~~qli-S~~adGliKlWnikt~------------eC~~tlD~--------H~DrvWaL~~~~~~~~ 603 (775)
T KOG0319|consen 550 VLRASFI-----RNGKQLI-SAGADGLIKLWNIKTN------------ECEMTLDA--------HNDRVWALSVSPLLDM 603 (775)
T ss_pred eEeeeee-----eCCcEEE-eccCCCcEEEEeccch------------hhhhhhhh--------ccceeEEEeecCccce
Confidence 9999997 4445588 5778999999999554 99999994 6666667777777777
Q ss_pred EEEeccCCCcEEEEEeecC-CCc-----------------ccccccccc----ccccccceeeeeecc----CCC----C
Q 001070 290 LLFANAKKNAIYSVHLGYG-NNS-----------------AATRIDYIA----EFTVTMPVLSFTGTI----DPP----S 339 (1165)
Q Consensus 290 ilLan~~r~aIYalhl~~g-~~~-----------------~~~r~dyia----eF~v~~PILSft~~~----d~~----g 339 (1165)
++-+.+...-|..=-..-- .+. .-..-+|-. -|++..|.+.|+.-. +.+ |
T Consensus 604 ~~tgg~Dg~i~~wkD~Te~~~~ee~~K~~eaieq~QeL~n~l~~~~~~~A~~LA~tLd~P~~~f~vi~~~~r~r~~e~l~ 683 (775)
T KOG0319|consen 604 FVTGGGDGRIIFWKDVTEEEQNEEQEKREEAIEQEQELENLLSQKRYTKAFVLALTLDKPHLVFTVINALYRERDPEELG 683 (775)
T ss_pred eEecCCCeEEEEeecCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHhhccCchhHHHHHHHHHhcCCcHHHH
Confidence 6655555433332111000 000 011333433 357788999998854 333 3
Q ss_pred cceEEEEEeehhhhhhhccc
Q 001070 340 EHIIKLYCVQTQAIQQYSLN 359 (1165)
Q Consensus 340 e~~vq~yCvQtqAIQqy~l~ 359 (1165)
..+-+|+-=|..++=||.+.
T Consensus 684 ~av~~L~~dq~~~Ll~~~~~ 703 (775)
T KOG0319|consen 684 QAVFRLNEDQPEALLQFVVK 703 (775)
T ss_pred HHHHHhhhhhHHHHHHHHHH
Confidence 45677777788877776543
No 24
>PTZ00420 coronin; Provisional
Probab=98.90 E-value=2.9e-08 Score=119.94 Aligned_cols=154 Identities=16% Similarity=0.190 Sum_probs=106.0
Q ss_pred cCce-EEEeecCCcEEEEeCcc-hhhHhhcCCcc---------------------EEEeecCCCceeEEecCCCCCCcce
Q 001070 156 NKHY-VCYGLKGGNVRVLNLNT-ATRSLLRGHTK---------------------IKIWEDSKVAPLIILKPHGGQPVNS 212 (1165)
Q Consensus 156 n~~y-IayG~kdg~IRVwdi~t-~ir~llrGH~q---------------------VriWD~~~g~pl~~lephdG~sV~S 212 (1165)
++.+ ||+|..||.|||||+.+ .....+..|.. |||||.+++..+..+..|.|. +.+
T Consensus 136 ~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~-~~s 214 (568)
T PTZ00420 136 MNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGG-KNT 214 (568)
T ss_pred CCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCC-cee
Confidence 3555 57999999999999987 32222322221 999999999999999999873 333
Q ss_pred eE-eecCCCCCCceEEEeecCCC---ceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCc
Q 001070 213 AQ-YLTAPNQAGHIILVTAGPLN---REVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAG 288 (1165)
Q Consensus 213 Va-Fl~aP~~~d~~~lvtsGsln---rtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~ 288 (1165)
.. |++.- +++..+++|+|..+ |+|+|||+... ..|+.++.+.... -.+--.++++.+
T Consensus 215 ~~v~~~~f-s~d~~~IlTtG~d~~~~R~VkLWDlr~~-----------~~pl~~~~ld~~~-------~~L~p~~D~~tg 275 (568)
T PTZ00420 215 KNIWIDGL-GGDDNYILSTGFSKNNMREMKLWDLKNT-----------TSALVTMSIDNAS-------APLIPHYDESTG 275 (568)
T ss_pred EEEEeeeE-cCCCCEEEEEEcCCCCccEEEEEECCCC-----------CCceEEEEecCCc-------cceEEeeeCCCC
Confidence 22 22110 13445578767554 79999998542 2577777653221 111234578888
Q ss_pred EEEEeccCCCcEEEEEeecCCCccccccccccccccccceeeeeecc
Q 001070 289 LLLFANAKKNAIYSVHLGYGNNSAATRIDYIAEFTVTMPVLSFTGTI 335 (1165)
Q Consensus 289 ~ilLan~~r~aIYalhl~~g~~~~~~r~dyiaeF~v~~PILSft~~~ 335 (1165)
.++|+-..-..||...+..+ .+-||++|.-+-|+-.|+-..
T Consensus 276 ~l~lsGkGD~tIr~~e~~~~------~~~~l~~~~s~~p~~g~~f~P 316 (568)
T PTZ00420 276 LIYLIGKGDGNCRYYQHSLG------SIRKVNEYKSCSPFRSFGFLP 316 (568)
T ss_pred CEEEEEECCCeEEEEEccCC------cEEeecccccCCCccceEEcc
Confidence 88888888899999998643 588899999999998887654
No 25
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=98.89 E-value=6.6e-09 Score=124.71 Aligned_cols=93 Identities=29% Similarity=0.472 Sum_probs=80.7
Q ss_pred eeec--CceEEEeecCCcEEEEeCcc-hhhHhhcCCcc--------------------EEEeecCCCceeEEecCCCCCC
Q 001070 153 IAVN--KHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK--------------------IKIWEDSKVAPLIILKPHGGQP 209 (1165)
Q Consensus 153 IAVn--~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q--------------------VriWD~~~g~pl~~lephdG~s 209 (1165)
|+.. +.+|++|..|++|||||.++ ..-+.|.||.. |||||+++|..|..+++|. .+
T Consensus 255 l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~-~~ 333 (537)
T KOG0274|consen 255 LAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHT-GP 333 (537)
T ss_pred EEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEecccc-cc
Confidence 6667 89999999999999999999 55569999998 9999999999999999984 59
Q ss_pred cceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEecc
Q 001070 210 VNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLK 266 (1165)
Q Consensus 210 V~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~ 266 (1165)
|++|.+- .+ ++.+|+.|.+||+|+... ++|+.+|.++
T Consensus 334 V~~v~~~-----~~---~lvsgs~d~~v~VW~~~~------------~~cl~sl~gH 370 (537)
T KOG0274|consen 334 VNCVQLD-----EP---LLVSGSYDGTVKVWDPRT------------GKCLKSLSGH 370 (537)
T ss_pred EEEEEec-----CC---EEEEEecCceEEEEEhhh------------ceeeeeecCC
Confidence 9999992 22 566899999999999854 4999999973
No 26
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.89 E-value=1.3e-09 Score=121.69 Aligned_cols=186 Identities=19% Similarity=0.290 Sum_probs=132.4
Q ss_pred cCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc--------------------EEEeecCCCceeEEecCCCCCCcceeE
Q 001070 156 NKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK--------------------IKIWEDSKVAPLIILKPHGGQPVNSAQ 214 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q--------------------VriWD~~~g~pl~~lephdG~sV~SVa 214 (1165)
|+.-|++|++|++|.|||.++ .+...|.||++ |||||+.+|.||-++-.| -+.|-.+-
T Consensus 206 DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihH-ceaVLhlr 284 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHH-CEAVLHLR 284 (499)
T ss_pred cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhh-cceeEEEE
Confidence 455578999999999999999 66669999999 999999999999999877 47999999
Q ss_pred eecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEec
Q 001070 215 YLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFAN 294 (1165)
Q Consensus 215 Fl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan 294 (1165)
|. +| ++| +.|-||+|.+||++.+.. -.|..-|. ||.|-+|.|.++. .|||-|.
T Consensus 285 f~---ng----~mv-tcSkDrsiaVWdm~sps~---------it~rrVLv--------GHrAaVNvVdfd~--kyIVsAS 337 (499)
T KOG0281|consen 285 FS---NG----YMV-TCSKDRSIAVWDMASPTD---------ITLRRVLV--------GHRAAVNVVDFDD--KYIVSAS 337 (499)
T ss_pred Ee---CC----EEE-EecCCceeEEEeccCchH---------HHHHHHHh--------hhhhheeeecccc--ceEEEec
Confidence 93 22 245 689999999999987643 36777676 5889999886554 4887776
Q ss_pred cCCC-------cEEEEEeecCCCccccccccccccccccc----eeeeeecc-------CC----------------CC-
Q 001070 295 AKKN-------AIYSVHLGYGNNSAATRIDYIAEFTVTMP----VLSFTGTI-------DP----------------PS- 339 (1165)
Q Consensus 295 ~~r~-------aIYalhl~~g~~~~~~r~dyiaeF~v~~P----ILSft~~~-------d~----------------~g- 339 (1165)
-.|- ..-++..-.|..-+.+...|=.+|.|+-. |=.|.+.. ++ .|
T Consensus 338 gDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGa 417 (499)
T KOG0281|consen 338 GDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGA 417 (499)
T ss_pred CCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeecc
Confidence 6542 12233334455566788889888887632 33343321 11 12
Q ss_pred -cceEEEEEeehhhhhhhccccccccCCCCCC
Q 001070 340 -EHIIKLYCVQTQAIQQYSLNLFQCLPPPAES 370 (1165)
Q Consensus 340 -e~~vq~yCvQtqAIQqy~l~~~~c~pp~~~~ 370 (1165)
.|.|++.-.|+ |+|--...-..|+-...++
T Consensus 418 YDGkikvWdl~a-aldpra~~~~~Cl~~lv~h 448 (499)
T KOG0281|consen 418 YDGKIKVWDLQA-ALDPRAPASTLCLRTLVEH 448 (499)
T ss_pred ccceEEEEeccc-ccCCcccccchHHHhhhhc
Confidence 25789988886 5555555555676544433
No 27
>PTZ00420 coronin; Provisional
Probab=98.88 E-value=2.6e-08 Score=120.27 Aligned_cols=128 Identities=12% Similarity=0.217 Sum_probs=89.7
Q ss_pred CceEEEeecCCcEEEEeCcc-h--hh------HhhcCCcc-----------------------EEEeecCCCceeEEecC
Q 001070 157 KHYVCYGLKGGNVRVLNLNT-A--TR------SLLRGHTK-----------------------IKIWEDSKVAPLIILKP 204 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~t-~--ir------~llrGH~q-----------------------VriWD~~~g~pl~~lep 204 (1165)
+.+|++|..||.|||||+.+ . +. ..|.||.. |||||++++..+..+.
T Consensus 87 ~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~- 165 (568)
T PTZ00420 87 SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN- 165 (568)
T ss_pred CCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-
Confidence 78999999999999999975 2 11 25788876 9999999998777776
Q ss_pred CCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEee
Q 001070 205 HGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVL 284 (1165)
Q Consensus 205 hdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~ 284 (1165)
| +..|+|++| .|+| .+|+ +|+.|++|+|||+.. +.|+++|.++.... ....++ .+.+.
T Consensus 166 ~-~~~V~Slsw--spdG---~lLa-t~s~D~~IrIwD~Rs------------g~~i~tl~gH~g~~--~s~~v~-~~~fs 223 (568)
T PTZ00420 166 M-PKKLSSLKW--NIKG---NLLS-GTCVGKHMHIIDPRK------------QEIASSFHIHDGGK--NTKNIW-IDGLG 223 (568)
T ss_pred c-CCcEEEEEE--CCCC---CEEE-EEecCCEEEEEECCC------------CcEEEEEecccCCc--eeEEEE-eeeEc
Confidence 3 358999999 4554 4354 577899999999843 48889998654221 111222 22345
Q ss_pred cCCcEEEEeccCC---CcEEEEEeec
Q 001070 285 SQAGLLLFANAKK---NAIYSVHLGY 307 (1165)
Q Consensus 285 p~a~~ilLan~~r---~aIYalhl~~ 307 (1165)
+++++|+-+...+ +.|+.-.+..
T Consensus 224 ~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 224 GDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred CCCCEEEEEEcCCCCccEEEEEECCC
Confidence 8888888765554 3566666554
No 28
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.87 E-value=3e-08 Score=123.37 Aligned_cols=128 Identities=14% Similarity=0.251 Sum_probs=94.5
Q ss_pred cCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCCCc-eeEEecCCCCCCcc
Q 001070 156 NKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSKVA-PLIILKPHGGQPVN 211 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~g~-pl~~lephdG~sV~ 211 (1165)
||.+|++|..||.|||||+.+ ..-..+.+|.. |+|||.+++. ++..+.+|. ..|+
T Consensus 587 ~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~-~~V~ 665 (793)
T PLN00181 587 DPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHS-KTVS 665 (793)
T ss_pred CCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCC-CCEE
Confidence 578999999999999999987 22223333321 9999998764 788888884 4899
Q ss_pred eeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEE
Q 001070 212 SAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLL 291 (1165)
Q Consensus 212 SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~il 291 (1165)
+|.|. ++.+|+ +|+.|.+|||||+.... ....|.|+.+|.+ |....+.+.++|++++|+
T Consensus 666 ~v~f~------~~~~lv-s~s~D~~ikiWd~~~~~------~~~~~~~l~~~~g--------h~~~i~~v~~s~~~~~la 724 (793)
T PLN00181 666 YVRFV------DSSTLV-SSSTDNTLKLWDLSMSI------SGINETPLHSFMG--------HTNVKNFVGLSVSDGYIA 724 (793)
T ss_pred EEEEe------CCCEEE-EEECCCEEEEEeCCCCc------cccCCcceEEEcC--------CCCCeeEEEEcCCCCEEE
Confidence 99994 223355 57899999999985431 1235789999884 667777889999999877
Q ss_pred EeccCCCcEEEEEee
Q 001070 292 FANAKKNAIYSVHLG 306 (1165)
Q Consensus 292 Lan~~r~aIYalhl~ 306 (1165)
.+. ..+.||..+..
T Consensus 725 sgs-~D~~v~iw~~~ 738 (793)
T PLN00181 725 TGS-ETNEVFVYHKA 738 (793)
T ss_pred EEe-CCCEEEEEECC
Confidence 666 44567776654
No 29
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=98.87 E-value=3.9e-09 Score=120.37 Aligned_cols=151 Identities=21% Similarity=0.326 Sum_probs=116.9
Q ss_pred Cceee-cC----CceEEecccCCCCCCCCCCcccccccccCCCcccccccEeee--cCceEEEeecCCcEEEEeCcc-hh
Q 001070 107 YGKRV-FG----DYVAYDVDAVEEGREPTQQLEVNPITKYGSDPELLIGRQIAV--NKHYVCYGLKGGNVRVLNLNT-AT 178 (1165)
Q Consensus 107 ~Gr~l-~g----~~~~~dVd~~~~ge~~~pqlev~pIt~Y~sd~~~~~GR~IAV--n~~yIayG~kdg~IRVwdi~t-~i 178 (1165)
.|++| ++ .-..|||++...+=-| |=-.-.+| -||- ||+.+|+|.-|..=||||+.| +.
T Consensus 272 sG~~L~TasfD~tWRlWD~~tk~ElL~Q----EGHs~~v~----------~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~ 337 (459)
T KOG0272|consen 272 SGKFLGTASFDSTWRLWDLETKSELLLQ----EGHSKGVF----------SIAFQPDGSLAATGGLDSLGRVWDLRTGRC 337 (459)
T ss_pred CCceeeecccccchhhcccccchhhHhh----cccccccc----------eeEecCCCceeeccCccchhheeecccCcE
Confidence 48888 55 4567888886654333 11111111 1333 799999999999999999999 66
Q ss_pred hHhhcCCcc----------------------EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCce
Q 001070 179 RSLLRGHTK----------------------IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNRE 236 (1165)
Q Consensus 179 r~llrGH~q----------------------VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrt 236 (1165)
-..|.||.+ +||||.+...++.+.-.| -+-|.-|.| .| ..+.||+| ++.|.+
T Consensus 338 im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH-~nlVS~Vk~--~p--~~g~fL~T-asyD~t 411 (459)
T KOG0272|consen 338 IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAH-SNLVSQVKY--SP--QEGYFLVT-ASYDNT 411 (459)
T ss_pred EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccc-cchhhheEe--cc--cCCeEEEE-cccCcc
Confidence 679999999 999999998888888877 469999999 45 24577885 889999
Q ss_pred EEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCC
Q 001070 237 VKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKK 297 (1165)
Q Consensus 237 IKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r 297 (1165)
+|||.. ++|.|+++|-| |+.=+.+|.+.++++||+-+...|
T Consensus 412 ~kiWs~------------~~~~~~ksLaG--------He~kV~s~Dis~d~~~i~t~s~DR 452 (459)
T KOG0272|consen 412 VKIWST------------RTWSPLKSLAG--------HEGKVISLDISPDSQAIATSSFDR 452 (459)
T ss_pred eeeecC------------CCcccchhhcC--------CccceEEEEeccCCceEEEeccCc
Confidence 999984 67899999995 666666999999999998765543
No 30
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.84 E-value=1.1e-07 Score=96.04 Aligned_cols=159 Identities=23% Similarity=0.354 Sum_probs=112.0
Q ss_pred cCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCCCceeEEecCCCCCCcce
Q 001070 156 NKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSKVAPLIILKPHGGQPVNS 212 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~g~pl~~lephdG~sV~S 212 (1165)
++++|++|..||.|+|||+.+ .....+.+|.. |+|||..++..+..+..|+ ..|.+
T Consensus 20 ~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~-~~i~~ 98 (289)
T cd00200 20 DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHT-SYVSS 98 (289)
T ss_pred CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccC-CcEEE
Confidence 579999999999999999987 55556777766 9999999988888998875 38999
Q ss_pred eEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEE
Q 001070 213 AQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLF 292 (1165)
Q Consensus 213 VaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilL 292 (1165)
+.|. |+ .. ++++|..|..|++|++.. +++..++. .|...+..+.++|++.+|+.
T Consensus 99 ~~~~--~~---~~-~~~~~~~~~~i~~~~~~~------------~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~ 152 (289)
T cd00200 99 VAFS--PD---GR-ILSSSSRDKTIKVWDVET------------GKCLTTLR--------GHTDWVNSVAFSPDGTFVAS 152 (289)
T ss_pred EEEc--CC---CC-EEEEecCCCeEEEEECCC------------cEEEEEec--------cCCCcEEEEEEcCcCCEEEE
Confidence 9994 44 34 444566899999999853 37777776 25567788999999888777
Q ss_pred eccCCCcEEEEEeecCCCccccccccccccccc-cceeeeeeccCC------CCcceEEEEEeeh
Q 001070 293 ANAKKNAIYSVHLGYGNNSAATRIDYIAEFTVT-MPVLSFTGTIDP------PSEHIIKLYCVQT 350 (1165)
Q Consensus 293 an~~r~aIYalhl~~g~~~~~~r~dyiaeF~v~-~PILSft~~~d~------~ge~~vq~yCvQt 350 (1165)
+. ....||...+..+.- +..|... .+|.++....+. .+.+.|.+|-+.+
T Consensus 153 ~~-~~~~i~i~d~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 208 (289)
T cd00200 153 SS-QDGTIKLWDLRTGKC--------VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST 208 (289)
T ss_pred Ec-CCCcEEEEEcccccc--------ceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCC
Confidence 76 445677766653221 2222222 255555554443 2356788887765
No 31
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.83 E-value=1.3e-08 Score=115.97 Aligned_cols=150 Identities=19% Similarity=0.336 Sum_probs=110.6
Q ss_pred EeeecCceEEEeecCCcEEEEeCcc----hhhHhhcCCcc----------------------EEEeecCCCceeEEecCC
Q 001070 152 QIAVNKHYVCYGLKGGNVRVLNLNT----ATRSLLRGHTK----------------------IKIWEDSKVAPLIILKPH 205 (1165)
Q Consensus 152 ~IAVn~~yIayG~kdg~IRVwdi~t----~ir~llrGH~q----------------------VriWD~~~g~pl~~leph 205 (1165)
+++-||||||++++|.+.-||++-. .+..+|.||.+ ++.||+.+|..++.+.-.
T Consensus 231 ~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~ 310 (519)
T KOG0293|consen 231 QFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG 310 (519)
T ss_pred EEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC
Confidence 4788999999999999999999886 45679999999 899999999877766533
Q ss_pred CCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeec
Q 001070 206 GGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLS 285 (1165)
Q Consensus 206 dG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p 285 (1165)
.|.+|.|.+|+ ||| ..+|+ |+.||+|-+||+++..- +.|+-+.+ .-+.-+++++
T Consensus 311 ~~~S~~sc~W~--pDg---~~~V~-Gs~dr~i~~wdlDgn~~-------~~W~gvr~-------------~~v~dlait~ 364 (519)
T KOG0293|consen 311 LGFSVSSCAWC--PDG---FRFVT-GSPDRTIIMWDLDGNIL-------GNWEGVRD-------------PKVHDLAITY 364 (519)
T ss_pred cCCCcceeEEc--cCC---ceeEe-cCCCCcEEEecCCcchh-------hccccccc-------------ceeEEEEEcC
Confidence 37899999996 555 44775 88999999999977642 34554333 2233678999
Q ss_pred CCcEEEEecc-CCCcEEEEEeecCCCccccccccccccccccceeeeeeccCC
Q 001070 286 QAGLLLFANA-KKNAIYSVHLGYGNNSAATRIDYIAEFTVTMPVLSFTGTIDP 337 (1165)
Q Consensus 286 ~a~~ilLan~-~r~aIYalhl~~g~~~~~~r~dyiaeF~v~~PILSft~~~d~ 337 (1165)
||.|+++... ++..||-+. +|.|. .-.+.-+||-||++-.|+
T Consensus 365 Dgk~vl~v~~d~~i~l~~~e---------~~~dr-~lise~~~its~~iS~d~ 407 (519)
T KOG0293|consen 365 DGKYVLLVTVDKKIRLYNRE---------ARVDR-GLISEEQPITSFSISKDG 407 (519)
T ss_pred CCcEEEEEecccceeeechh---------hhhhh-ccccccCceeEEEEcCCC
Confidence 9998887764 344555432 23332 123456899999997665
No 32
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=98.82 E-value=2.4e-08 Score=115.25 Aligned_cols=120 Identities=19% Similarity=0.345 Sum_probs=93.2
Q ss_pred CceEEEeecCCcEEEEeCcc-hhhHhhcCCcc-------------------------------EEEeecCCCceeEEecC
Q 001070 157 KHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK-------------------------------IKIWEDSKVAPLIILKP 204 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q-------------------------------VriWD~~~g~pl~~lep 204 (1165)
|+.|++.+.|++.|||++.. .-.+=|++|++ ||+||+..|.|+++|.-
T Consensus 371 g~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k 450 (524)
T KOG0273|consen 371 GSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK 450 (524)
T ss_pred CceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc
Confidence 89999999999999999987 88889999996 99999999999999998
Q ss_pred CCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEee
Q 001070 205 HGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVL 284 (1165)
Q Consensus 205 hdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~ 284 (1165)
| +++||+|+|+ |+| ++ +++|++|+.|-||.+-++ +-++++.+ ...++.|.-+
T Consensus 451 H-~~pVysvafS--~~g---~y-lAsGs~dg~V~iws~~~~------------~l~~s~~~---------~~~Ifel~Wn 502 (524)
T KOG0273|consen 451 H-QEPVYSVAFS--PNG---RY-LASGSLDGCVHIWSTKTG------------KLVKSYQG---------TGGIFELCWN 502 (524)
T ss_pred C-CCceEEEEec--CCC---cE-EEecCCCCeeEeccccch------------heeEeecC---------CCeEEEEEEc
Confidence 8 6899999995 554 53 558999999999998554 44444442 2334467777
Q ss_pred cCCcEEEEeccCCCcEEEEEe
Q 001070 285 SQAGLLLFANAKKNAIYSVHL 305 (1165)
Q Consensus 285 p~a~~ilLan~~r~aIYalhl 305 (1165)
-++..| -+.++..-+-++-|
T Consensus 503 ~~G~kl-~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 503 AAGDKL-GACASDGSVCVLDL 522 (524)
T ss_pred CCCCEE-EEEecCCCceEEEe
Confidence 777544 34455555555544
No 33
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.82 E-value=1.2e-07 Score=95.69 Aligned_cols=159 Identities=25% Similarity=0.356 Sum_probs=114.5
Q ss_pred cCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCCCceeEEecCCCCCCcce
Q 001070 156 NKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSKVAPLIILKPHGGQPVNS 212 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~g~pl~~lephdG~sV~S 212 (1165)
++++|++|..||.|+|||+.+ .....+.+|.. |++||.+++.++..+..|. ..|++
T Consensus 62 ~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~i~~ 140 (289)
T cd00200 62 DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT-DWVNS 140 (289)
T ss_pred CCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCC-CcEEE
Confidence 578999999999999999998 55556677774 9999999988899998774 48999
Q ss_pred eEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEE
Q 001070 213 AQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLF 292 (1165)
Q Consensus 213 VaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilL 292 (1165)
++|. |+ .. ++++|..|+.|++||+.. +++.+++.. +...+..+.++|++.+|++
T Consensus 141 ~~~~--~~---~~-~l~~~~~~~~i~i~d~~~------------~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~ 194 (289)
T cd00200 141 VAFS--PD---GT-FVASSSQDGTIKLWDLRT------------GKCVATLTG--------HTGEVNSVAFSPDGEKLLS 194 (289)
T ss_pred EEEc--Cc---CC-EEEEEcCCCcEEEEEccc------------cccceeEec--------CccccceEEECCCcCEEEE
Confidence 9994 44 34 344677899999999843 377777773 5567778999999988888
Q ss_pred eccCCCcEEEEEeecCCCcccccccccccc-ccccceeeeeeccCC------CCcceEEEEEeeh
Q 001070 293 ANAKKNAIYSVHLGYGNNSAATRIDYIAEF-TVTMPVLSFTGTIDP------PSEHIIKLYCVQT 350 (1165)
Q Consensus 293 an~~r~aIYalhl~~g~~~~~~r~dyiaeF-~v~~PILSft~~~d~------~ge~~vq~yCvQt 350 (1165)
+.. ...|+...+..+. .+..| .-..+|.++....+. +..+.+++|-+.+
T Consensus 195 ~~~-~~~i~i~d~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 195 SSS-DGTIKLWDLSTGK--------CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred ecC-CCcEEEEECCCCc--------eecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence 776 6677777665421 22333 223356665554443 1256677777654
No 34
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=1.2e-08 Score=120.33 Aligned_cols=121 Identities=24% Similarity=0.337 Sum_probs=98.9
Q ss_pred cCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCCC-ceeEEecCCCCCCcc
Q 001070 156 NKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSKV-APLIILKPHGGQPVN 211 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~g-~pl~~lephdG~sV~ 211 (1165)
-+.+|++|+.|.+|||+|-+| .--+.|..|.. ||.||..++ .+.++||+| -|=|.
T Consensus 66 RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH-~HyVM 144 (794)
T KOG0276|consen 66 RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGH-EHYVM 144 (794)
T ss_pred ccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCc-ceEEE
Confidence 368999999999999999999 66679999998 999999987 569999999 48999
Q ss_pred eeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCc-EE
Q 001070 212 SAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAG-LL 290 (1165)
Q Consensus 212 SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~-~i 290 (1165)
.|+| .|..+. -.+|+++|||||+|.+... .|.-||++ |+.=+|.|.+-+.+. =.
T Consensus 145 qv~f--nPkD~n---tFaS~sLDrTVKVWslgs~------------~~nfTl~g--------HekGVN~Vdyy~~gdkpy 199 (794)
T KOG0276|consen 145 QVAF--NPKDPN---TFASASLDRTVKVWSLGSP------------HPNFTLEG--------HEKGVNCVDYYTGGDKPY 199 (794)
T ss_pred EEEe--cCCCcc---ceeeeeccccEEEEEcCCC------------CCceeeec--------cccCcceEEeccCCCcce
Confidence 9999 687666 5779999999999999444 88999994 788888998877763 23
Q ss_pred EEeccCCCcEEE
Q 001070 291 LFANAKKNAIYS 302 (1165)
Q Consensus 291 lLan~~r~aIYa 302 (1165)
|++-+.-+.|-+
T Consensus 200 lIsgaDD~tiKv 211 (794)
T KOG0276|consen 200 LISGADDLTIKV 211 (794)
T ss_pred EEecCCCceEEE
Confidence 445555555443
No 35
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.80 E-value=4.9e-08 Score=121.54 Aligned_cols=125 Identities=18% Similarity=0.305 Sum_probs=88.9
Q ss_pred ecCceEEEeecCCcEEEEeCcchhh---------HhhcCCcc----------------------EEEeecCCCceeEEec
Q 001070 155 VNKHYVCYGLKGGNVRVLNLNTATR---------SLLRGHTK----------------------IKIWEDSKVAPLIILK 203 (1165)
Q Consensus 155 Vn~~yIayG~kdg~IRVwdi~t~ir---------~llrGH~q----------------------VriWD~~~g~pl~~le 203 (1165)
-||+|||+|..||.|||||..+... ..+.+|.. |||||..++..+..++
T Consensus 493 ~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~ 572 (793)
T PLN00181 493 RDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK 572 (793)
T ss_pred CCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 3799999999999999999864211 01223321 9999999999999999
Q ss_pred CCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEe
Q 001070 204 PHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVV 283 (1165)
Q Consensus 204 phdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~ 283 (1165)
+|. ..|++|+| .|..+. ++.+|+.|++|+|||+.. +.|+.++.. + .-+..+.+
T Consensus 573 ~H~-~~V~~l~~--~p~~~~---~L~Sgs~Dg~v~iWd~~~------------~~~~~~~~~--------~-~~v~~v~~ 625 (793)
T PLN00181 573 EHE-KRVWSIDY--SSADPT---LLASGSDDGSVKLWSINQ------------GVSIGTIKT--------K-ANICCVQF 625 (793)
T ss_pred CCC-CCEEEEEE--cCCCCC---EEEEEcCCCEEEEEECCC------------CcEEEEEec--------C-CCeEEEEE
Confidence 995 48999999 443333 455688999999999843 389999874 2 23446666
Q ss_pred ecC-CcEEEEeccCCCcEEEEEeec
Q 001070 284 LSQ-AGLLLFANAKKNAIYSVHLGY 307 (1165)
Q Consensus 284 ~p~-a~~ilLan~~r~aIYalhl~~ 307 (1165)
.+. +.+|+.+ ...+.||...+..
T Consensus 626 ~~~~g~~latg-s~dg~I~iwD~~~ 649 (793)
T PLN00181 626 PSESGRSLAFG-SADHKVYYYDLRN 649 (793)
T ss_pred eCCCCCEEEEE-eCCCeEEEEECCC
Confidence 554 5555554 4556788777654
No 36
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=98.76 E-value=7.3e-08 Score=106.50 Aligned_cols=164 Identities=15% Similarity=0.202 Sum_probs=120.4
Q ss_pred ceee--cC---CceEEecccCCCCCCCCCCcccccccccCCCcccccccEeeecCceEEEeecCCcEEEEeCcc-hhhHh
Q 001070 108 GKRV--FG---DYVAYDVDAVEEGREPTQQLEVNPITKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNT-ATRSL 181 (1165)
Q Consensus 108 Gr~l--~g---~~~~~dVd~~~~ge~~~pqlev~pIt~Y~sd~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t-~ir~l 181 (1165)
|..+ .| -=.||++-++..-..++=.=++.-=|-|-|.-.| +|+.-|.||+-|.++-+|||.+ ....-
T Consensus 109 g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f-------~dD~~ilT~SGD~TCalWDie~g~~~~~ 181 (343)
T KOG0286|consen 109 GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRF-------LDDNHILTGSGDMTCALWDIETGQQTQV 181 (343)
T ss_pred CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEE-------cCCCceEecCCCceEEEEEcccceEEEE
Confidence 7777 44 3457999987654444113346666677776644 4567778999999999999999 55559
Q ss_pred hcCCcc-----------------------EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEE
Q 001070 182 LRGHTK-----------------------IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVK 238 (1165)
Q Consensus 182 lrGH~q-----------------------VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIK 238 (1165)
|.||+. .|+||+|.|.+++.|++|++ -|++|.|. |+|.. +++||-|.+.+
T Consensus 182 f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes-DINsv~ff--P~G~a----fatGSDD~tcR 254 (343)
T KOG0286|consen 182 FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES-DINSVRFF--PSGDA----FATGSDDATCR 254 (343)
T ss_pred ecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccc-ccceEEEc--cCCCe----eeecCCCceeE
Confidence 999999 89999999999999999976 79999995 77755 66799999999
Q ss_pred EeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEE
Q 001070 239 LWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVH 304 (1165)
Q Consensus 239 LW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalh 304 (1165)
|+|+-.. .=+..++ ++. ..-=+++|+++-+|++|+.. +.-..+|+--
T Consensus 255 lyDlRaD------------~~~a~ys--~~~----~~~gitSv~FS~SGRlLfag-y~d~~c~vWD 301 (343)
T KOG0286|consen 255 LYDLRAD------------QELAVYS--HDS----IICGITSVAFSKSGRLLFAG-YDDFTCNVWD 301 (343)
T ss_pred EEeecCC------------cEEeeec--cCc----ccCCceeEEEcccccEEEee-ecCCceeEee
Confidence 9999443 2233333 211 12347799999999887765 6655565543
No 37
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.75 E-value=1.6e-08 Score=115.10 Aligned_cols=117 Identities=26% Similarity=0.424 Sum_probs=97.0
Q ss_pred eeecCceEEEeecCCcEEEEeCcchhhHhhcCCcc-----------------------EEEeecCCCceeEEecCCCCCC
Q 001070 153 IAVNKHYVCYGLKGGNVRVLNLNTATRSLLRGHTK-----------------------IKIWEDSKVAPLIILKPHGGQP 209 (1165)
Q Consensus 153 IAVn~~yIayG~kdg~IRVwdi~t~ir~llrGH~q-----------------------VriWD~~~g~pl~~lephdG~s 209 (1165)
.+-||.|+.+|-++|.|++|+-+.+.-..+.+|.. |||||.+-..+-.++.+| |--
T Consensus 146 ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GH-gwd 224 (464)
T KOG0284|consen 146 WSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGH-GWD 224 (464)
T ss_pred EccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccC-CCC
Confidence 34489999999999999999999844444555542 999999999888899998 889
Q ss_pred cceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcE
Q 001070 210 VNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGL 289 (1165)
Q Consensus 210 V~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ 289 (1165)
|-||.| .|.. + ||++|+-|..|||||. +++.|+-||- +|+.-++.|...|.+.|
T Consensus 225 VksvdW--HP~k-g---LiasgskDnlVKlWDp------------rSg~cl~tlh--------~HKntVl~~~f~~n~N~ 278 (464)
T KOG0284|consen 225 VKSVDW--HPTK-G---LIASGSKDNLVKLWDP------------RSGSCLATLH--------GHKNTVLAVKFNPNGNW 278 (464)
T ss_pred cceecc--CCcc-c---eeEEccCCceeEeecC------------CCcchhhhhh--------hccceEEEEEEcCCCCe
Confidence 999999 4442 3 7889999999999996 5569999999 48899999999999988
Q ss_pred EEEeccC
Q 001070 290 LLFANAK 296 (1165)
Q Consensus 290 ilLan~~ 296 (1165)
|+-+...
T Consensus 279 Llt~skD 285 (464)
T KOG0284|consen 279 LLTGSKD 285 (464)
T ss_pred eEEccCC
Confidence 8765444
No 38
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=98.73 E-value=3.1e-08 Score=112.05 Aligned_cols=113 Identities=22% Similarity=0.401 Sum_probs=92.7
Q ss_pred CceEEEeecCCcEEEEeCcchhhHhhcCCcc-------------------------------------------------
Q 001070 157 KHYVCYGLKGGNVRVLNLNTATRSLLRGHTK------------------------------------------------- 187 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~t~ir~llrGH~q------------------------------------------------- 187 (1165)
+++|.+|..||.+||||.......++.||+.
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~ 194 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKR 194 (423)
T ss_pred CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccccc
Confidence 8999999999999999999999999999998
Q ss_pred ----------------------EEEeecCC-------------------------CceeEEecCCCCCCcceeEeecCCC
Q 001070 188 ----------------------IKIWEDSK-------------------------VAPLIILKPHGGQPVNSAQYLTAPN 220 (1165)
Q Consensus 188 ----------------------VriWD~~~-------------------------g~pl~~lephdG~sV~SVaFl~aP~ 220 (1165)
++||++.. +.|+..+++|. ++|.+|.|.+
T Consensus 195 ~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt-~~Vs~V~w~d--- 270 (423)
T KOG0313|consen 195 SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT-EPVSSVVWSD--- 270 (423)
T ss_pred ceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc-cceeeEEEcC---
Confidence 89998321 14899999995 5999999942
Q ss_pred CCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCC
Q 001070 221 QAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKN 298 (1165)
Q Consensus 221 ~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~ 298 (1165)
.+ .+-|++.|+|||.||+.++ .|..|+.. .+-||.|.++|...+|.-+...|+
T Consensus 271 -~~---v~yS~SwDHTIk~WDletg------------~~~~~~~~---------~ksl~~i~~~~~~~Ll~~gssdr~ 323 (423)
T KOG0313|consen 271 -AT---VIYSVSWDHTIKVWDLETG------------GLKSTLTT---------NKSLNCISYSPLSKLLASGSSDRH 323 (423)
T ss_pred -CC---ceEeecccceEEEEEeecc------------cceeeeec---------CcceeEeecccccceeeecCCCCc
Confidence 22 3447999999999999666 89999984 455679999998877776666653
No 39
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.73 E-value=4.5e-08 Score=108.38 Aligned_cols=155 Identities=18% Similarity=0.246 Sum_probs=106.3
Q ss_pred ccccccccCCCcccccccEeeecCceEEEeecCCcEEEEeCcchhh--HhhcCCcc----------------------EE
Q 001070 134 EVNPITKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNTATR--SLLRGHTK----------------------IK 189 (1165)
Q Consensus 134 ev~pIt~Y~sd~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t~ir--~llrGH~q----------------------Vr 189 (1165)
+..||-.-.--.+...-=++..||.|+++|.-|.+|-+||...... ..++||+. ||
T Consensus 36 l~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 36 LQAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred ccchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEE
Confidence 3445554444444444445777999999999999999999887333 48889999 99
Q ss_pred EeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCC--------------CC--
Q 001070 190 IWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLP--------------TH-- 253 (1165)
Q Consensus 190 iWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~--------------~~-- 253 (1165)
+||+++|....+++.|. .-|+++. |...+ .+||.||+.|+|+||||.-..+..-+. ++
T Consensus 116 ~wD~~tG~~~rk~k~h~-~~vNs~~----p~rrg-~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv 189 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGHT-SFVNSLD----PSRRG-PQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQV 189 (338)
T ss_pred EEecccceeeehhcccc-ceeeecC----ccccC-CeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccce
Confidence 99999999999999984 5777776 44444 449999999999999998533111000 00
Q ss_pred --------CCCc-----ceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEE
Q 001070 254 --------AESW-----KCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSV 303 (1165)
Q Consensus 254 --------~~~w-----~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYal 303 (1165)
-+.| .|+-||+ ||.|-+-++.+.|++.++ |+|+-.|.|-.+
T Consensus 190 ~sggIdn~ikvWd~r~~d~~~~ls--------Gh~DtIt~lsls~~gs~l-lsnsMd~tvrvw 243 (338)
T KOG0265|consen 190 ISGGIDNDIKVWDLRKNDGLYTLS--------GHADTITGLSLSRYGSFL-LSNSMDNTVRVW 243 (338)
T ss_pred eeccccCceeeeccccCcceEEee--------cccCceeeEEeccCCCcc-ccccccceEEEE
Confidence 0112 3455555 467777777777777765 455555544443
No 40
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=98.71 E-value=5.2e-08 Score=107.61 Aligned_cols=110 Identities=23% Similarity=0.377 Sum_probs=93.2
Q ss_pred eeecCceEEEeecCCcEEEEeCcch-------hhHhhcCCcc---------------------EEEeecCCCceeEEecC
Q 001070 153 IAVNKHYVCYGLKGGNVRVLNLNTA-------TRSLLRGHTK---------------------IKIWEDSKVAPLIILKP 204 (1165)
Q Consensus 153 IAVn~~yIayG~kdg~IRVwdi~t~-------ir~llrGH~q---------------------VriWD~~~g~pl~~lep 204 (1165)
+|.+|+|||.|.=|..--|+++.++ +...|.||+. .-+||+++|..+..|.+
T Consensus 105 ~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~G 184 (343)
T KOG0286|consen 105 YSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHG 184 (343)
T ss_pred ECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecC
Confidence 5668999999999999999999852 4457999999 67999999999999999
Q ss_pred CCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEee
Q 001070 205 HGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVL 284 (1165)
Q Consensus 205 hdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~ 284 (1165)
|.| -|.++.+ +|..+. ..+||+-|++-||||+-. +.|+|||++ |+.=+|.|.+.
T Consensus 185 H~g-DV~slsl--~p~~~n---tFvSg~cD~~aklWD~R~------------~~c~qtF~g--------hesDINsv~ff 238 (343)
T KOG0286|consen 185 HTG-DVMSLSL--SPSDGN---TFVSGGCDKSAKLWDVRS------------GQCVQTFEG--------HESDINSVRFF 238 (343)
T ss_pred Ccc-cEEEEec--CCCCCC---eEEecccccceeeeeccC------------cceeEeecc--------cccccceEEEc
Confidence 987 7999999 565333 456899999999999843 499999996 66678899999
Q ss_pred cCCc
Q 001070 285 SQAG 288 (1165)
Q Consensus 285 p~a~ 288 (1165)
|++-
T Consensus 239 P~G~ 242 (343)
T KOG0286|consen 239 PSGD 242 (343)
T ss_pred cCCC
Confidence 9986
No 41
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.70 E-value=1.2e-07 Score=103.05 Aligned_cols=168 Identities=14% Similarity=0.262 Sum_probs=114.5
Q ss_pred Cceee-c-C-C-ceEEecccCCCCCCCCCCcccccccccCCCcccccccEeeecCceEEEeecCCcEEEEeCcc-hhhHh
Q 001070 107 YGKRV-F-G-D-YVAYDVDAVEEGREPTQQLEVNPITKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNT-ATRSL 181 (1165)
Q Consensus 107 ~Gr~l-~-g-~-~~~~dVd~~~~ge~~~pqlev~pIt~Y~sd~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t-~ir~l 181 (1165)
+|+.| . | . -..|||.+..| . |+.-|..--+-+.-=.+--||++..+|.+||.+||||+.+ ....+
T Consensus 51 dk~~LAaa~~qhvRlyD~~S~np---~-------Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~ 120 (311)
T KOG0315|consen 51 DKKDLAAAGNQHVRLYDLNSNNP---N-------PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRN 120 (311)
T ss_pred CcchhhhccCCeeEEEEccCCCC---C-------ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchh
Confidence 35566 3 3 2 34699999877 3 4555554432222222334899999999999999999987 22223
Q ss_pred hcCCcc---------------------EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEe
Q 001070 182 LRGHTK---------------------IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLW 240 (1165)
Q Consensus 182 lrGH~q---------------------VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW 240 (1165)
|+--+. |||||.....+-+.+-|.++.+|.|++- .|+|.- |+ ++-.-.+.-.|
T Consensus 121 ~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v--~~dgsm---l~-a~nnkG~cyvW 194 (311)
T KOG0315|consen 121 YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTV--MPDGSM---LA-AANNKGNCYVW 194 (311)
T ss_pred ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEE--cCCCcE---EE-EecCCccEEEE
Confidence 332222 9999999887899999999999999999 565543 44 56666778889
Q ss_pred EccCcCCCCCCCCCCCcceEEEE-eccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEee
Q 001070 241 ASASEEGWSLPTHAESWKCTQTL-DLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLG 306 (1165)
Q Consensus 241 ~~a~~~~~~~~~~~~~w~C~QTL-e~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~ 306 (1165)
++-.. |+. +|.+-..-..|..+.+++.++|+..+|.-+.+. ..+|+.-.+
T Consensus 195 ~l~~~---------------~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd-ktv~iwn~~ 245 (311)
T KOG0315|consen 195 RLLNH---------------QTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD-KTVKIWNTD 245 (311)
T ss_pred EccCC---------------CccccceEhhheecccceEEEEEECCCCcEEEeecCC-ceEEEEecC
Confidence 98442 111 122222234688999999999999998877665 456666555
No 42
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.64 E-value=7.2e-08 Score=119.47 Aligned_cols=135 Identities=18% Similarity=0.311 Sum_probs=112.8
Q ss_pred cEeeecCceEEEeecCCcEEEEeCcc-------------------hhhHhhcCCcc----------------------EE
Q 001070 151 RQIAVNKHYVCYGLKGGNVRVLNLNT-------------------ATRSLLRGHTK----------------------IK 189 (1165)
Q Consensus 151 R~IAVn~~yIayG~kdg~IRVwdi~t-------------------~ir~llrGH~q----------------------Vr 189 (1165)
..++-||+|||.|+.|+.|-||..+. +.+.+|+||+. |-
T Consensus 75 VR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsVi 154 (942)
T KOG0973|consen 75 VRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVI 154 (942)
T ss_pred EEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEE
Confidence 34788999999999999999999981 25679999998 88
Q ss_pred EeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCC
Q 001070 190 IWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSA 269 (1165)
Q Consensus 190 iWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~ 269 (1165)
||+.++...+.++++|.| .|--|.| .|-| +|+ ++-+-||+||+|.. ..|-|..+++.+=..
T Consensus 155 iwn~~tF~~~~vl~~H~s-~VKGvs~--DP~G---ky~-ASqsdDrtikvwrt------------~dw~i~k~It~pf~~ 215 (942)
T KOG0973|consen 155 IWNAKTFELLKVLRGHQS-LVKGVSW--DPIG---KYF-ASQSDDRTLKVWRT------------SDWGIEKSITKPFEE 215 (942)
T ss_pred EEccccceeeeeeecccc-cccceEE--CCcc---Cee-eeecCCceEEEEEc------------ccceeeEeeccchhh
Confidence 999999988999999976 8999999 4544 545 47999999999995 347899988853221
Q ss_pred CCccccccEEEEEeecCCcEEEEeccCCCcEEEEEee
Q 001070 270 KPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLG 306 (1165)
Q Consensus 270 ~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~ 306 (1165)
....-||+-..-+|||.+|..+|+-++..|++.|-
T Consensus 216 --~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 216 --SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred --CCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 13468999999999999999999999999998874
No 43
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.63 E-value=1.8e-07 Score=106.83 Aligned_cols=118 Identities=21% Similarity=0.322 Sum_probs=87.6
Q ss_pred cCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc-----------------------------------------------
Q 001070 156 NKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------------------------------- 187 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------------------------------- 187 (1165)
++++......|+..||||++. +.+++|+||+.
T Consensus 230 ~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~ 309 (459)
T KOG0288|consen 230 DNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIV 309 (459)
T ss_pred CCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceE
Confidence 478888888999999999999 99999999998
Q ss_pred --------------EEEeecCCCceeEEecCC--------------------------------------------CCCC
Q 001070 188 --------------IKIWEDSKVAPLIILKPH--------------------------------------------GGQP 209 (1165)
Q Consensus 188 --------------VriWD~~~g~pl~~leph--------------------------------------------dG~s 209 (1165)
||+||.+++.++.....+ +|+-
T Consensus 310 ~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asD 389 (459)
T KOG0288|consen 310 CSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASD 389 (459)
T ss_pred ecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccc
Confidence 899998776322221111 2345
Q ss_pred cceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcE
Q 001070 210 VNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGL 289 (1165)
Q Consensus 210 V~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ 289 (1165)
+..|.| +|++ . +|++||-|+.|+||+..++ +|..-|....+. +-+++++.+|.|..
T Consensus 390 wtrvvf--Spd~---~-YvaAGS~dgsv~iW~v~tg------------KlE~~l~~s~s~------~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 390 WTRVVF--SPDG---S-YVAAGSADGSVYIWSVFTG------------KLEKVLSLSTSN------AAITSLSWNPSGSG 445 (459)
T ss_pred cceeEE--CCCC---c-eeeeccCCCcEEEEEccCc------------eEEEEeccCCCC------cceEEEEEcCCCch
Confidence 667777 3444 4 3557999999999999666 888777763322 34669999999999
Q ss_pred EEEeccCC
Q 001070 290 LLFANAKK 297 (1165)
Q Consensus 290 ilLan~~r 297 (1165)
+|-|+-.+
T Consensus 446 Llsadk~~ 453 (459)
T KOG0288|consen 446 LLSADKQK 453 (459)
T ss_pred hhcccCCc
Confidence 88877643
No 44
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.62 E-value=1.2e-07 Score=114.99 Aligned_cols=138 Identities=16% Similarity=0.311 Sum_probs=98.4
Q ss_pred cccccccccCCCcccccccE----eeecCceEEEeecCCcEEEEeCcc--------------------------------
Q 001070 133 LEVNPITKYGSDPELLIGRQ----IAVNKHYVCYGLKGGNVRVLNLNT-------------------------------- 176 (1165)
Q Consensus 133 lev~pIt~Y~sd~~~~~GR~----IAVn~~yIayG~kdg~IRVwdi~t-------------------------------- 176 (1165)
-+.+.+++-.+......|-- |+-||||||+|.+||.||||-+-.
T Consensus 251 kelsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~ 330 (712)
T KOG0283|consen 251 KELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEE 330 (712)
T ss_pred ccceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccc
Confidence 45555555444443444443 666999999999999999998754
Q ss_pred h-----------------------------hhHhhcCCcc---------------------EEEeecCCCceeEEecCCC
Q 001070 177 A-----------------------------TRSLLRGHTK---------------------IKIWEDSKVAPLIILKPHG 206 (1165)
Q Consensus 177 ~-----------------------------ir~llrGH~q---------------------VriWD~~~g~pl~~lephd 206 (1165)
. --..|+||++ ||+|+...-.+|.+|. |
T Consensus 331 ~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-H- 408 (712)
T KOG0283|consen 331 KISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-H- 408 (712)
T ss_pred cccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-c-
Confidence 0 0124667766 9999998888899996 3
Q ss_pred CCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecC
Q 001070 207 GQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQ 286 (1165)
Q Consensus 207 G~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~ 286 (1165)
-+=|.||+| .|-. -+|.| ||++|..|+||.+...+ -..|. +=++++-.|++.|+
T Consensus 409 ndfVTcVaF--nPvD--DryFi-SGSLD~KvRiWsI~d~~---------------Vv~W~------Dl~~lITAvcy~Pd 462 (712)
T KOG0283|consen 409 NDFVTCVAF--NPVD--DRYFI-SGSLDGKVRLWSISDKK---------------VVDWN------DLRDLITAVCYSPD 462 (712)
T ss_pred CCeeEEEEe--cccC--CCcEe-ecccccceEEeecCcCe---------------eEeeh------hhhhhheeEEeccC
Confidence 358999999 4533 34556 79999999999983331 11110 12478889999999
Q ss_pred CcEEEEeccCCC
Q 001070 287 AGLLLFANAKKN 298 (1165)
Q Consensus 287 a~~ilLan~~r~ 298 (1165)
|++.|+.-.+..
T Consensus 463 Gk~avIGt~~G~ 474 (712)
T KOG0283|consen 463 GKGAVIGTFNGY 474 (712)
T ss_pred CceEEEEEeccE
Confidence 999999987765
No 45
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.61 E-value=4.6e-06 Score=97.29 Aligned_cols=235 Identities=16% Similarity=0.223 Sum_probs=141.1
Q ss_pred hHHHHHhhcCCCCC-CCCCCCCCCceee-cC-C--ceEEecccCCCCCCCCC--CcccccccccCCCcccccccE--eee
Q 001070 85 GPQILALLNNNKSK-HVGSTAPIYGKRV-FG-D--YVAYDVDAVEEGREPTQ--QLEVNPITKYGSDPELLIGRQ--IAV 155 (1165)
Q Consensus 85 ~~~~~~~l~~~~~~-~~~~~~p~~Gr~l-~g-~--~~~~dVd~~~~ge~~~p--qlev~pIt~Y~sd~~~~~GR~--IAV 155 (1165)
++|=|..|+-+.-- .+.-+.| -||+ +| - --|+| +..||.-- | ||.+--=..| -|. +.-
T Consensus 409 harq~~tL~HGEvVcAvtIS~~--trhVyTgGkgcVKVWd--is~pg~k~-PvsqLdcl~rdny--------iRSckL~p 475 (705)
T KOG0639|consen 409 HARQINTLAHGEVVCAVTISNP--TRHVYTGGKGCVKVWD--ISQPGNKS-PVSQLDCLNRDNY--------IRSCKLLP 475 (705)
T ss_pred hHHhhhhhccCcEEEEEEecCC--cceeEecCCCeEEEee--ccCCCCCC-ccccccccCcccc--------eeeeEecC
Confidence 66666666543111 0011334 5666 44 2 23444 45566554 4 5555432222 233 556
Q ss_pred cCceEEEeecCCcEEEEeCcc---hhhHhhcCCcc----------------------EEEeecCCCceeEEecCCCCCCc
Q 001070 156 NKHYVCYGLKGGNVRVLNLNT---ATRSLLRGHTK----------------------IKIWEDSKVAPLIILKPHGGQPV 210 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t---~ir~llrGH~q----------------------VriWD~~~g~pl~~lephdG~sV 210 (1165)
||+-|..|.+--++-|||+++ +|+.-|..-.. |+|||.++...|+.|.+|. +-+
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGht-DGa 554 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT-DGA 554 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCC-CCc
Confidence 888888999999999999997 66666655333 9999999999999999992 236
Q ss_pred ceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCC--------------------CCCCCCCCCcceEEEEeccCCCC
Q 001070 211 NSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEG--------------------WSLPTHAESWKCTQTLDLKSSAK 270 (1165)
Q Consensus 211 ~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~--------------------~~~~~~~~~w~C~QTLe~~~s~~ 270 (1165)
.|+-. .+||.. |-| |.+|.+++-||+..++- |+.-+...+-.=++.-.....-.
T Consensus 555 scIdi--s~dGtk---lWT-GGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyq 628 (705)
T KOG0639|consen 555 SCIDI--SKDGTK---LWT-GGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQ 628 (705)
T ss_pred eeEEe--cCCCce---eec-CCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcccee
Confidence 67766 455544 555 67999999999965432 22211111101111111110112
Q ss_pred CccccccEEEEEeecCCcEEEEeccCCCcEEEEEeecCCCccccccccccccccccceeeeeeccCC------CCcceEE
Q 001070 271 PRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGYGNNSAATRIDYIAEFTVTMPVLSFTGTIDP------PSEHIIK 344 (1165)
Q Consensus 271 ~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~g~~~~~~r~dyiaeF~v~~PILSft~~~d~------~ge~~vq 344 (1165)
..-|+..++++-+.+-|.|.+ +--+-|.+-|-.--||.. |-+-.=+.++||-.|-.|. .|+-..-
T Consensus 629 lhlheScVLSlKFa~cGkwfv-StGkDnlLnawrtPyGas--------iFqskE~SsVlsCDIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 629 LHLHESCVLSLKFAYCGKWFV-STGKDNLLNAWRTPYGAS--------IFQSKESSSVLSCDISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred ecccccEEEEEEecccCceee-ecCchhhhhhccCccccc--------eeeccccCcceeeeeccCceEEEecCCCcceE
Confidence 235778889999999999865 444556665555555433 3344557899999887655 4665667
Q ss_pred EEEe
Q 001070 345 LYCV 348 (1165)
Q Consensus 345 ~yCv 348 (1165)
||-|
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 7755
No 46
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=98.59 E-value=2.3e-07 Score=107.28 Aligned_cols=122 Identities=18% Similarity=0.295 Sum_probs=93.4
Q ss_pred eeec--CceEEEeecCCcEEEEeCcchhhHhhcCCcc----------------------EEEeecCCCc-----------
Q 001070 153 IAVN--KHYVCYGLKGGNVRVLNLNTATRSLLRGHTK----------------------IKIWEDSKVA----------- 197 (1165)
Q Consensus 153 IAVn--~~yIayG~kdg~IRVwdi~t~ir~llrGH~q----------------------VriWD~~~g~----------- 197 (1165)
++=| |.+||||.+||.+||||+..++-+.|.-|.. +-+||..+|.
T Consensus 241 L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~ 320 (524)
T KOG0273|consen 241 LDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP 320 (524)
T ss_pred EEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC
Confidence 4445 9999999999999999999999999999998 5567765541
Q ss_pred ------------------------------eeEEecCCCC----------------------------------------
Q 001070 198 ------------------------------PLIILKPHGG---------------------------------------- 207 (1165)
Q Consensus 198 ------------------------------pl~~lephdG---------------------------------------- 207 (1165)
|+.+|.+|+|
T Consensus 321 ~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H 400 (524)
T KOG0273|consen 321 ALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH 400 (524)
T ss_pred ccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhh
Confidence 4566666644
Q ss_pred -CCcceeEeecCCCCCC------ceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEE
Q 001070 208 -QPVNSAQYLTAPNQAG------HIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQ 280 (1165)
Q Consensus 208 -~sV~SVaFl~aP~~~d------~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~s 280 (1165)
+.+|++.| .|.++. .. .+.+.+.|.++||||... +.|+-||. .|.+-+.+
T Consensus 401 skei~t~~w--sp~g~v~~n~~~~~-~l~sas~dstV~lwdv~~------------gv~i~~f~--------kH~~pVys 457 (524)
T KOG0273|consen 401 SKEIYTIKW--SPTGPVTSNPNMNL-MLASASFDSTVKLWDVES------------GVPIHTLM--------KHQEPVYS 457 (524)
T ss_pred ccceeeEee--cCCCCccCCCcCCc-eEEEeecCCeEEEEEccC------------CceeEeec--------cCCCceEE
Confidence 25666666 354432 23 455788999999999844 49999997 47888889
Q ss_pred EEeecCCcEEEEeccCC
Q 001070 281 VVVLSQAGLLLFANAKK 297 (1165)
Q Consensus 281 V~~~p~a~~ilLan~~r 297 (1165)
|+.+|++.++.-.+..+
T Consensus 458 vafS~~g~ylAsGs~dg 474 (524)
T KOG0273|consen 458 VAFSPNGRYLASGSLDG 474 (524)
T ss_pred EEecCCCcEEEecCCCC
Confidence 99999999998777765
No 47
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.57 E-value=4.2e-07 Score=109.53 Aligned_cols=131 Identities=19% Similarity=0.347 Sum_probs=108.2
Q ss_pred eeec--CceEEEee-cCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCCCceeEEecCCC
Q 001070 153 IAVN--KHYVCYGL-KGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSKVAPLIILKPHG 206 (1165)
Q Consensus 153 IAVn--~~yIayG~-kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~g~pl~~lephd 206 (1165)
.++| |-+||-|. |-|++=||+-.+ ..-.=..||.. |||||+++|.|+.+|.-|.
T Consensus 313 ~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHt 392 (893)
T KOG0291|consen 313 VSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHT 392 (893)
T ss_pred EEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCC
Confidence 5677 99999964 579999999998 44445678877 9999999999999999885
Q ss_pred CCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecC
Q 001070 207 GQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQ 286 (1165)
Q Consensus 207 G~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~ 286 (1165)
-.|..|.|. ..+++|+ |.|+|.|++.||+ ...+|..||.. .+..-|..|++||+
T Consensus 393 -s~Vt~v~f~-----~~g~~ll-ssSLDGtVRAwDl------------kRYrNfRTft~-------P~p~QfscvavD~s 446 (893)
T KOG0291|consen 393 -SGVTAVQFT-----ARGNVLL-SSSLDGTVRAWDL------------KRYRNFRTFTS-------PEPIQFSCVAVDPS 446 (893)
T ss_pred -CceEEEEEE-----ecCCEEE-EeecCCeEEeeee------------cccceeeeecC-------CCceeeeEEEEcCC
Confidence 479999994 4456566 7999999999998 44599999996 24567889999999
Q ss_pred CcEEEEeccCCCcEEEEEeecCC
Q 001070 287 AGLLLFANAKKNAIYSVHLGYGN 309 (1165)
Q Consensus 287 a~~ilLan~~r~aIYalhl~~g~ 309 (1165)
|.+|..+.-..=.||+.-+.-|.
T Consensus 447 GelV~AG~~d~F~IfvWS~qTGq 469 (893)
T KOG0291|consen 447 GELVCAGAQDSFEIFVWSVQTGQ 469 (893)
T ss_pred CCEEEeeccceEEEEEEEeecCe
Confidence 99999998888888888777654
No 48
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.57 E-value=3.3e-07 Score=105.33 Aligned_cols=94 Identities=21% Similarity=0.256 Sum_probs=73.4
Q ss_pred EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccC
Q 001070 188 IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKS 267 (1165)
Q Consensus 188 VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~ 267 (1165)
|||||..++.-+.+|-||.| +|.+++|. -+|-+|+| +..|.+||||||-.- +-.+||.+
T Consensus 371 vkiwdlks~~~~a~Fpght~-~vk~i~Fs-----ENGY~Lat-~add~~V~lwDLRKl------------~n~kt~~l-- 429 (506)
T KOG0289|consen 371 VKIWDLKSQTNVAKFPGHTG-PVKAISFS-----ENGYWLAT-AADDGSVKLWDLRKL------------KNFKTIQL-- 429 (506)
T ss_pred EEEEEcCCccccccCCCCCC-ceeEEEec-----cCceEEEE-EecCCeEEEEEehhh------------cccceeec--
Confidence 99999999888999999877 99999993 22344676 667888999999433 56678875
Q ss_pred CCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEeecCCC
Q 001070 268 SAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGYGNN 310 (1165)
Q Consensus 268 s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~g~~ 310 (1165)
.++.=++++.+|..|.|+.++ .+-||+.|..+...
T Consensus 430 -----~~~~~v~s~~fD~SGt~L~~~---g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 430 -----DEKKEVNSLSFDQSGTYLGIA---GSDLQVYICKKKTK 464 (506)
T ss_pred -----cccccceeEEEcCCCCeEEee---cceeEEEEEecccc
Confidence 122237899999999999998 78899988886443
No 49
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.57 E-value=7.3e-07 Score=99.57 Aligned_cols=162 Identities=20% Similarity=0.269 Sum_probs=116.9
Q ss_pred CceEEecccCCCC----CCCCCCcccccccccCCCcccccccEeeecCceEEEeecCCcEEEEeCcchhh----------
Q 001070 114 DYVAYDVDAVEEG----REPTQQLEVNPITKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNTATR---------- 179 (1165)
Q Consensus 114 ~~~~~dVd~~~~g----e~~~pqlev~pIt~Y~sd~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t~ir---------- 179 (1165)
++++|.++...+- +.+ ++.++|+=-|.+--+ --.-+||+|.|+|+|..|-+|+|+|..++..
T Consensus 10 E~~i~Gf~l~~~~~~~~~s~--~~~l~~lF~~~aH~~--sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~Hags 85 (362)
T KOG0294|consen 10 EHVILGFKLDPEPKGCTDSV--KPTLKPLFAFSAHAG--SITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGS 85 (362)
T ss_pred eeEEEEEEeccCcccccccc--ceeeecccccccccc--ceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccc
Confidence 7888777765554 444 677788877766552 2334999999999999999999999987433
Q ss_pred -------------HhhcCCcc--EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccC
Q 001070 180 -------------SLLRGHTK--IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASAS 244 (1165)
Q Consensus 180 -------------~llrGH~q--VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~ 244 (1165)
+||.||.. |-|||+.+=..|..+++|.|+ |+-++- .|. ++..+ +=.-|+.|++|+|-.
T Consensus 86 itaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~-Vt~lsi--HPS---~KLAL-sVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 86 ITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ-VTDLSI--HPS---GKLAL-SVGGDQVLRTWNLVR 158 (362)
T ss_pred eEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc-cceeEe--cCC---CceEE-EEcCCceeeeehhhc
Confidence 45555554 999999887889999999997 888887 444 45345 456899999999977
Q ss_pred cCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEeec
Q 001070 245 EEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGY 307 (1165)
Q Consensus 245 ~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~ 307 (1165)
+++. .| +++. +.+- .|-.+|+|...++.-..+=-||-+..+.
T Consensus 159 Gr~a---------~v---~~L~-------~~at--~v~w~~~Gd~F~v~~~~~i~i~q~d~A~ 200 (362)
T KOG0294|consen 159 GRVA---------FV---LNLK-------NKAT--LVSWSPQGDHFVVSGRNKIDIYQLDNAS 200 (362)
T ss_pred Cccc---------ee---eccC-------Ccce--eeEEcCCCCEEEEEeccEEEEEecccHh
Confidence 6542 23 2331 1221 2677899998888877777777766554
No 50
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.51 E-value=7.7e-07 Score=104.16 Aligned_cols=62 Identities=18% Similarity=0.381 Sum_probs=47.7
Q ss_pred EEEeecCCCceeEEec---CCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEe
Q 001070 188 IKIWEDSKVAPLIILK---PHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLD 264 (1165)
Q Consensus 188 VriWD~~~g~pl~~le---phdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe 264 (1165)
|.|||=.+|.-|-.|+ +|.| +||.++|+ ||+.- ++| .|.|+++||||.+.. +|++|+.
T Consensus 214 i~iyDGktge~vg~l~~~~aHkG-sIfalsWs--PDs~~---~~T-~SaDkt~KIWdVs~~------------slv~t~~ 274 (603)
T KOG0318|consen 214 IYIYDGKTGEKVGELEDSDAHKG-SIFALSWS--PDSTQ---FLT-VSADKTIKIWDVSTN------------SLVSTWP 274 (603)
T ss_pred EEEEcCCCccEEEEecCCCCccc-cEEEEEEC--CCCce---EEE-ecCCceEEEEEeecc------------ceEEEee
Confidence 6788877777788888 6665 99999994 55543 664 889999999999766 7888877
Q ss_pred ccCC
Q 001070 265 LKSS 268 (1165)
Q Consensus 265 ~~~s 268 (1165)
+...
T Consensus 275 ~~~~ 278 (603)
T KOG0318|consen 275 MGST 278 (603)
T ss_pred cCCc
Confidence 6443
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=5.7e-07 Score=109.67 Aligned_cols=132 Identities=19% Similarity=0.278 Sum_probs=96.6
Q ss_pred cEeee--cCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCCCceeEEecCC
Q 001070 151 RQIAV--NKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSKVAPLIILKPH 205 (1165)
Q Consensus 151 R~IAV--n~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~g~pl~~leph 205 (1165)
|.|+- .+-+.++|..|+.|||||-++ +.--.|.||-. ||||..+++.++.++.+|
T Consensus 55 Rgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGH 134 (1202)
T KOG0292|consen 55 RGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGH 134 (1202)
T ss_pred ceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecC
Confidence 44444 356778999999999999999 55559999988 999999999999999999
Q ss_pred CCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcC-CCCCCCC-----------CCCc---ceEEEEeccCCCC
Q 001070 206 GGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEE-GWSLPTH-----------AESW---KCTQTLDLKSSAK 270 (1165)
Q Consensus 206 dG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~-~~~~~~~-----------~~~w---~C~QTLe~~~s~~ 270 (1165)
.|=|.+..|. | .-| ||+|||+|.||++||+.+=+ +-..|+. +..+ -|+-.+-+
T Consensus 135 -nHYVMcAqFh--p-tED---lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL----- 202 (1202)
T KOG0292|consen 135 -NHYVMCAQFH--P-TED---LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL----- 202 (1202)
T ss_pred -ceEEEeeccC--C-ccc---eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee-----
Confidence 4899999993 3 124 89999999999999996532 2222321 0111 33333222
Q ss_pred CccccccEEEEEeecCCcEEEEecc
Q 001070 271 PRVEEAFFNQVVVLSQAGLLLFANA 295 (1165)
Q Consensus 271 ~~~~~aff~sV~~~p~a~~ilLan~ 295 (1165)
.||+.=+|=++++|.--+||=+.-
T Consensus 203 -EGHDRGVNwaAfhpTlpliVSG~D 226 (1202)
T KOG0292|consen 203 -EGHDRGVNWAAFHPTLPLIVSGAD 226 (1202)
T ss_pred -cccccccceEEecCCcceEEecCC
Confidence 268888888999998776665433
No 52
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=98.50 E-value=5.2e-07 Score=103.99 Aligned_cols=165 Identities=19% Similarity=0.283 Sum_probs=118.7
Q ss_pred cCCceEEecccCC-----CCCCCCCCcccccccccCCCcccccccEeeecCceEEEeecCCcEEEEeCcc--------hh
Q 001070 112 FGDYVAYDVDAVE-----EGREPTQQLEVNPITKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNT--------AT 178 (1165)
Q Consensus 112 ~g~~~~~dVd~~~-----~ge~~~pqlev~pIt~Y~sd~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t--------~i 178 (1165)
.|+-.|||+.... .||+. |+|.+.==++- .|++.--++ ..-+|++|..|+.|++|||+. .-
T Consensus 146 ~~dv~Vfd~tk~~s~~~~~~~~~-Pdl~L~gH~~e--g~glsWn~~---~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p 219 (422)
T KOG0264|consen 146 SGDVYVFDYTKHPSKPKASGECR-PDLRLKGHEKE--GYGLSWNRQ---QEGTLLSGSDDHTICLWDINAESKEDKVVDP 219 (422)
T ss_pred CCCEEEEEeccCCCcccccccCC-CceEEEeeccc--ccccccccc---cceeEeeccCCCcEEEEeccccccCCccccc
Confidence 5677888886532 34555 56655544441 222111111 245788899999999999996 23
Q ss_pred hHhhcCCcc-----------------------EEEeecC--CCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCC
Q 001070 179 RSLLRGHTK-----------------------IKIWEDS--KVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPL 233 (1165)
Q Consensus 179 r~llrGH~q-----------------------VriWD~~--~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGsl 233 (1165)
+..|+||+. +.|||.| +..|-+.-+.|+| .|+||+| .|.+.. +|++||.
T Consensus 220 ~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~-~vn~~~f--np~~~~---ilAT~S~ 293 (422)
T KOG0264|consen 220 KTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA-EVNCVAF--NPFNEF---ILATGSA 293 (422)
T ss_pred eEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC-ceeEEEe--CCCCCc---eEEeccC
Confidence 458999998 8899999 4566777777855 9999999 676644 7888999
Q ss_pred CceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEeec
Q 001070 234 NREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGY 307 (1165)
Q Consensus 234 nrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~ 307 (1165)
|+||+|||+-. .-.|+-||++ |++=+++|--+|.-.=||.+...-+.+-+--+..
T Consensus 294 D~tV~LwDlRn-----------L~~~lh~~e~--------H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 294 DKTVALWDLRN-----------LNKPLHTFEG--------HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred CCcEEEeechh-----------cccCceeccC--------CCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 99999999832 2358889984 7777779999999888888877766666555554
No 53
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.47 E-value=2.1e-06 Score=90.71 Aligned_cols=120 Identities=12% Similarity=0.064 Sum_probs=88.3
Q ss_pred ceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCCCceeEEecCCCCCCcceeE
Q 001070 158 HYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSKVAPLIILKPHGGQPVNSAQ 214 (1165)
Q Consensus 158 ~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~g~pl~~lephdG~sV~SVa 214 (1165)
+.++++..||.|++||+.+ .....+.+|.. |++||..++..+..+..+ ..+..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG--PDPELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC--CCccEEE
Confidence 4566888999999999987 55566676654 999999988877777543 3467788
Q ss_pred eecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEec
Q 001070 215 YLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFAN 294 (1165)
Q Consensus 215 Fl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan 294 (1165)
| .|++ +++++++..+++|++||+... +|+.+++.. .....++++|++.+++.+.
T Consensus 80 ~--~~~g---~~l~~~~~~~~~l~~~d~~~~------------~~~~~~~~~---------~~~~~~~~~~dg~~l~~~~ 133 (300)
T TIGR03866 80 L--HPNG---KILYIANEDDNLVTVIDIETR------------KVLAEIPVG---------VEPEGMAVSPDGKIVVNTS 133 (300)
T ss_pred E--CCCC---CEEEEEcCCCCeEEEEECCCC------------eEEeEeeCC---------CCcceEEECCCCCEEEEEe
Confidence 8 4554 446667778899999998543 677777631 2234688899999999988
Q ss_pred cCCCcEEEEEe
Q 001070 295 AKKNAIYSVHL 305 (1165)
Q Consensus 295 ~~r~aIYalhl 305 (1165)
...+.+|.+..
T Consensus 134 ~~~~~~~~~d~ 144 (300)
T TIGR03866 134 ETTNMAHFIDT 144 (300)
T ss_pred cCCCeEEEEeC
Confidence 77777766543
No 54
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.46 E-value=7.9e-07 Score=107.08 Aligned_cols=135 Identities=16% Similarity=0.242 Sum_probs=98.4
Q ss_pred cccccccCCCcccccccEeeec-CceEEEeecCCcEEEEeCcc----------hhhHhhcCCcc----------------
Q 001070 135 VNPITKYGSDPELLIGRQIAVN-KHYVCYGLKGGNVRVLNLNT----------ATRSLLRGHTK---------------- 187 (1165)
Q Consensus 135 v~pIt~Y~sd~~~~~GR~IAVn-~~yIayG~kdg~IRVwdi~t----------~ir~llrGH~q---------------- 187 (1165)
..++..|+.--..+.+=-++.. -.|+++|+-|++|+||++-. ..|..-+-|.+
T Consensus 401 ~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT 480 (775)
T KOG0319|consen 401 SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIAT 480 (775)
T ss_pred hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEe
Confidence 4455555544433333223333 47999999999999999865 55667788888
Q ss_pred ------EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEE
Q 001070 188 ------IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQ 261 (1165)
Q Consensus 188 ------VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~Q 261 (1165)
.|||+...+..+.+|.+|. .-|.+|-|. |+ -+ ++++.|.|+|||||.++. +.|++
T Consensus 481 ~SqDktaKiW~le~~~l~~vLsGH~-RGvw~V~Fs--~~---dq-~laT~SgD~TvKIW~is~------------fSClk 541 (775)
T KOG0319|consen 481 GSQDKTAKIWDLEQLRLLGVLSGHT-RGVWCVSFS--KN---DQ-LLATCSGDKTVKIWSIST------------FSCLK 541 (775)
T ss_pred cccccceeeecccCceEEEEeeCCc-cceEEEEec--cc---cc-eeEeccCCceEEEEEecc------------ceeee
Confidence 9999999888999999984 579999994 43 24 566799999999999944 59999
Q ss_pred EEeccCCCCCccccccEEEEEeecCCcEEEEeccC
Q 001070 262 TLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAK 296 (1165)
Q Consensus 262 TLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~ 296 (1165)
||+|+ ..=++.+.+-..+..|+=+.+.
T Consensus 542 T~eGH--------~~aVlra~F~~~~~qliS~~ad 568 (775)
T KOG0319|consen 542 TFEGH--------TSAVLRASFIRNGKQLISAGAD 568 (775)
T ss_pred eecCc--------cceeEeeeeeeCCcEEEeccCC
Confidence 99974 4445566655666666555544
No 55
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=2.1e-06 Score=101.86 Aligned_cols=171 Identities=18% Similarity=0.313 Sum_probs=117.3
Q ss_pred Cceee-cC----CceEEecccCCCCCCCCCCcccccccccCCCcccccccE--eeecCceEEEeecCCcEEEEeCcc---
Q 001070 107 YGKRV-FG----DYVAYDVDAVEEGREPTQQLEVNPITKYGSDPELLIGRQ--IAVNKHYVCYGLKGGNVRVLNLNT--- 176 (1165)
Q Consensus 107 ~Gr~l-~g----~~~~~dVd~~~~ge~~~pqlev~pIt~Y~sd~~~~~GR~--IAVn~~yIayG~kdg~IRVwdi~t--- 176 (1165)
+|++| .| .-.+||+...+. . +.+... ..+|= +|=|+.-+.+|.+||.|-++|+..
T Consensus 228 ~G~~LavG~~~g~v~iwD~~~~k~---~-~~~~~~-----------h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~ 292 (484)
T KOG0305|consen 228 DGSHLAVGTSDGTVQIWDVKEQKK---T-RTLRGS-----------HASRVGSLAWNSSVLSSGSRDGKILNHDVRISQH 292 (484)
T ss_pred CCCEEEEeecCCeEEEEehhhccc---c-ccccCC-----------cCceeEEEeccCceEEEecCCCcEEEEEEecchh
Confidence 79988 55 445688776554 1 222221 22342 555889999999999999999997
Q ss_pred hhhHhhcCCcc----------------------EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCC
Q 001070 177 ATRSLLRGHTK----------------------IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLN 234 (1165)
Q Consensus 177 ~ir~llrGH~q----------------------VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGsln 234 (1165)
..+ .++||+| |.|||...-.|+.++..|.+ .|..++| .|..++ ...+-||+.|
T Consensus 293 ~~~-~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~a-AVKA~aw--cP~q~~-lLAsGGGs~D 367 (484)
T KOG0305|consen 293 VVS-TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTA-AVKALAW--CPWQSG-LLATGGGSAD 367 (484)
T ss_pred hhh-hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccce-eeeEeee--CCCccC-ceEEcCCCcc
Confidence 333 7999999 99999988889999999976 9999999 588877 3244567899
Q ss_pred ceEEEeEccCcCCCCCCCCCCCcceEEEEe------------------------ccCCCCCccccccEEEEEeecCCcEE
Q 001070 235 REVKLWASASEEGWSLPTHAESWKCTQTLD------------------------LKSSAKPRVEEAFFNQVVVLSQAGLL 290 (1165)
Q Consensus 235 rtIKLW~~a~~~~~~~~~~~~~w~C~QTLe------------------------~~~s~~~~~~~aff~sV~~~p~a~~i 290 (1165)
|+||+|+..++... .--+..+-.|--+.- +..-....+|..-+++.+.+||+..|
T Consensus 368 ~~i~fwn~~~g~~i-~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i 446 (484)
T KOG0305|consen 368 RCIKFWNTNTGARI-DSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETI 446 (484)
T ss_pred cEEEEEEcCCCcEe-cccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEE
Confidence 99999999655321 011222222211111 11112334788888888899998888
Q ss_pred EEeccCCC
Q 001070 291 LFANAKKN 298 (1165)
Q Consensus 291 lLan~~r~ 298 (1165)
+.+.+.-+
T Consensus 447 ~t~a~DET 454 (484)
T KOG0305|consen 447 VTGAADET 454 (484)
T ss_pred EEecccCc
Confidence 88877654
No 56
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.41 E-value=3.7e-06 Score=92.64 Aligned_cols=168 Identities=18% Similarity=0.267 Sum_probs=116.2
Q ss_pred CCCCceee---cCCceEEecccCCCCCCCCCCcccccccccCCCcccccccEeee--cCceEEEeecCCcEEEEeCcc--
Q 001070 104 APIYGKRV---FGDYVAYDVDAVEEGREPTQQLEVNPITKYGSDPELLIGRQIAV--NKHYVCYGLKGGNVRVLNLNT-- 176 (1165)
Q Consensus 104 ~p~~Gr~l---~g~~~~~dVd~~~~ge~~~pqlev~pIt~Y~sd~~~~~GR~IAV--n~~yIayG~kdg~IRVwdi~t-- 176 (1165)
-|.+|+.| .+++.+--.++.. |.. +.+.-+... -.----|.||= .|+|||.|+-|.+.-||--..
T Consensus 23 hp~~g~ilAscg~Dk~vriw~~~~-~~s----~~ck~vld~---~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~e 94 (312)
T KOG0645|consen 23 HPGKGVILASCGTDKAVRIWSTSS-GDS----WTCKTVLDD---GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGE 94 (312)
T ss_pred ccCCceEEEeecCCceEEEEecCC-CCc----EEEEEeccc---cchheeeeeeecCCCcEEEEeeccceEEEeecCCCc
Confidence 35568877 3366655555433 222 333333222 22223577777 799999999999999997764
Q ss_pred -hhhHhhcCCcc----------------------EEEeecCCC---ceeEEecCCCCCCcceeEeecCCCCCCceEEEee
Q 001070 177 -ATRSLLRGHTK----------------------IKIWEDSKV---APLIILKPHGGQPVNSAQYLTAPNQAGHIILVTA 230 (1165)
Q Consensus 177 -~ir~llrGH~q----------------------VriWD~~~g---~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvts 230 (1165)
..-..|.||+. |-||++..+ .++.+|++| -+-|--|.| .| ..+ |+.|
T Consensus 95 fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H-tqDVK~V~W--HP-t~d---lL~S 167 (312)
T KOG0645|consen 95 FECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH-TQDVKHVIW--HP-TED---LLFS 167 (312)
T ss_pred eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc-cccccEEEE--cC-Ccc---eeEE
Confidence 66779999999 889998754 369999999 479999999 22 225 7889
Q ss_pred cCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCc-EEEEeccCCCcEEEE
Q 001070 231 GPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAG-LLLFANAKKNAIYSV 303 (1165)
Q Consensus 231 GslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~-~ilLan~~r~aIYal 303 (1165)
+|.|.|||+|.-..+ ..|.|+|||.++ ..-+-++++++.|. ++--+|-.--.||..
T Consensus 168 ~SYDnTIk~~~~~~d---------ddW~c~~tl~g~--------~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 168 CSYDNTIKVYRDEDD---------DDWECVQTLDGH--------ENTVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred eccCCeEEEEeecCC---------CCeeEEEEecCc--------cceEEEEEecCCCceEEEecCCcceEeeee
Confidence 999999999997543 578999999974 33344777888774 344444444445553
No 57
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.41 E-value=9e-07 Score=102.85 Aligned_cols=113 Identities=19% Similarity=0.348 Sum_probs=84.2
Q ss_pred eeecCceEEEeecCCcEEEEeCcch-hhHhhcCCcc---------------------EEEeecCCCce-eEEecCCCCCC
Q 001070 153 IAVNKHYVCYGLKGGNVRVLNLNTA-TRSLLRGHTK---------------------IKIWEDSKVAP-LIILKPHGGQP 209 (1165)
Q Consensus 153 IAVn~~yIayG~kdg~IRVwdi~t~-ir~llrGH~q---------------------VriWD~~~g~p-l~~lephdG~s 209 (1165)
+.+|++.+++|.-||.||+||+.+. -+..=-.|.+ |||||..+|+- +-.+.-| -+.
T Consensus 162 ~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H-~Kt 240 (487)
T KOG0310|consen 162 SPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNH-NKT 240 (487)
T ss_pred ccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcc-cce
Confidence 4457889999999999999999972 3333334544 99999997754 4444446 369
Q ss_pred cceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcE
Q 001070 210 VNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGL 289 (1165)
Q Consensus 210 V~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ 289 (1165)
|.|+.|. -++ .-|+ ||++|+.+|+++. ..|+-+-++.+ ..-++++++.|+.+-
T Consensus 241 VTcL~l~--s~~---~rLl-S~sLD~~VKVfd~------------t~~Kvv~s~~~---------~~pvLsiavs~dd~t 293 (487)
T KOG0310|consen 241 VTCLRLA--SDS---TRLL-SGSLDRHVKVFDT------------TNYKVVHSWKY---------PGPVLSIAVSPDDQT 293 (487)
T ss_pred EEEEEee--cCC---ceEe-ecccccceEEEEc------------cceEEEEeeec---------ccceeeEEecCCCce
Confidence 9999995 233 3366 6999999999995 35688888877 245779999998887
Q ss_pred EEEe
Q 001070 290 LLFA 293 (1165)
Q Consensus 290 ilLa 293 (1165)
+++.
T Consensus 294 ~viG 297 (487)
T KOG0310|consen 294 VVIG 297 (487)
T ss_pred EEEe
Confidence 7664
No 58
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.40 E-value=5.2e-07 Score=107.48 Aligned_cols=130 Identities=16% Similarity=0.314 Sum_probs=90.8
Q ss_pred eecCceEEEeecCCcEEEEeCcc--h-----hhHhhcCCcc----------------------EEEeecCCC--ceeEEe
Q 001070 154 AVNKHYVCYGLKGGNVRVLNLNT--A-----TRSLLRGHTK----------------------IKIWEDSKV--APLIIL 202 (1165)
Q Consensus 154 AVn~~yIayG~kdg~IRVwdi~t--~-----ir~llrGH~q----------------------VriWD~~~g--~pl~~l 202 (1165)
|-||+||.+|.+||.||+|++.. . .-.-+.-|+. |++|+...+ .++.++
T Consensus 34 a~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti 113 (735)
T KOG0308|consen 34 APNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI 113 (735)
T ss_pred CCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh
Confidence 34788999999999999999985 2 1234455554 999999987 789999
Q ss_pred cCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccC-CCCCccccccEEEE
Q 001070 203 KPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKS-SAKPRVEEAFFNQV 281 (1165)
Q Consensus 203 ephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~-s~~~~~~~aff~sV 281 (1165)
+-|+ +=|-++|+. ++ + .+||+||.+||.|+|||+.++-. .-+-+++... ..-..|+++=+.+.
T Consensus 114 r~H~-DYVkcla~~-ak---~-~~lvaSgGLD~~IflWDin~~~~----------~l~~s~n~~t~~sl~sG~k~siYSL 177 (735)
T KOG0308|consen 114 RTHK-DYVKCLAYI-AK---N-NELVASGGLDRKIFLWDINTGTA----------TLVASFNNVTVNSLGSGPKDSIYSL 177 (735)
T ss_pred hccc-chheeeeec-cc---C-ceeEEecCCCccEEEEEccCcch----------hhhhhccccccccCCCCCccceeee
Confidence 9885 689999994 22 2 45899999999999999976511 2233344322 12222667767788
Q ss_pred EeecCCcEEEEeccCCCcE
Q 001070 282 VVLSQAGLLLFANAKKNAI 300 (1165)
Q Consensus 282 ~~~p~a~~ilLan~~r~aI 300 (1165)
+.++.+ .++++--..+-|
T Consensus 178 A~N~t~-t~ivsGgtek~l 195 (735)
T KOG0308|consen 178 AMNQTG-TIIVSGGTEKDL 195 (735)
T ss_pred ecCCcc-eEEEecCcccce
Confidence 888877 555554444443
No 59
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.38 E-value=2e-06 Score=99.66 Aligned_cols=33 Identities=18% Similarity=0.429 Sum_probs=31.2
Q ss_pred ecCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc
Q 001070 155 VNKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK 187 (1165)
Q Consensus 155 Vn~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q 187 (1165)
-||+||++|-.|.+|-|||..| ..+..|+||..
T Consensus 212 ~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~ 245 (479)
T KOG0299|consen 212 SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRG 245 (479)
T ss_pred CCCcEEEecCCCceEEEecCcccchhhccccccc
Confidence 3899999999999999999999 88889999999
No 60
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.38 E-value=6.5e-07 Score=99.67 Aligned_cols=101 Identities=22% Similarity=0.376 Sum_probs=83.8
Q ss_pred ccEeee--cCceEEEeecCCcEEEEeCcchhhHhh----cCCcc----------------------EEEeecCCCceeEE
Q 001070 150 GRQIAV--NKHYVCYGLKGGNVRVLNLNTATRSLL----RGHTK----------------------IKIWEDSKVAPLII 201 (1165)
Q Consensus 150 GR~IAV--n~~yIayG~kdg~IRVwdi~t~ir~ll----rGH~q----------------------VriWD~~~g~pl~~ 201 (1165)
-|.|+- .|-||.-|..-...|++||+|.++-+- .+|+. |||||=-++.|+.+
T Consensus 219 vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t 298 (430)
T KOG0640|consen 219 VRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRT 298 (430)
T ss_pred eeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHH
Confidence 455555 489999999999999999999666543 45655 99999888888887
Q ss_pred ec-CCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCC
Q 001070 202 LK-PHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSS 268 (1165)
Q Consensus 202 le-phdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s 268 (1165)
++ .|+|-.|.|.-|. ++++|+++|| -|.++|||++.++ +|+++..+...
T Consensus 299 ~~~AH~gsevcSa~Ft-----kn~kyiLsSG-~DS~vkLWEi~t~------------R~l~~YtGAg~ 348 (430)
T KOG0640|consen 299 IGNAHGGSEVCSAVFT-----KNGKYILSSG-KDSTVKLWEISTG------------RMLKEYTGAGT 348 (430)
T ss_pred HHhhcCCceeeeEEEc-----cCCeEEeecC-CcceeeeeeecCC------------ceEEEEecCCc
Confidence 75 7888899999995 7889999877 8999999999665 99999998643
No 61
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.38 E-value=1.9e-06 Score=100.22 Aligned_cols=125 Identities=22% Similarity=0.361 Sum_probs=92.5
Q ss_pred cCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc-----------------------EEEeecCCCceeEEecCCCCCCcc
Q 001070 156 NKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK-----------------------IKIWEDSKVAPLIILKPHGGQPVN 211 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q-----------------------VriWD~~~g~pl~~lephdG~sV~ 211 (1165)
||+.+|.|-+.|+|+|+|+++ .+-.+|++|+- +|+||..++.=.-.+.+|. +-|-
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~ht-DYVR 157 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHT-DYVR 157 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCc-ceeE
Confidence 577778999999999999888 66668899987 9999999988322566663 5899
Q ss_pred eeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEE
Q 001070 212 SAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLL 291 (1165)
Q Consensus 212 SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~il 291 (1165)
+.+|. |-. +| +|.+|+-|++|||||.-.... -+.+|+ |..-+-+|...|.+++|.
T Consensus 158 ~g~~~--~~~-~h--ivvtGsYDg~vrl~DtR~~~~-----------~v~eln---------hg~pVe~vl~lpsgs~ia 212 (487)
T KOG0310|consen 158 CGDIS--PAN-DH--IVVTGSYDGKVRLWDTRSLTS-----------RVVELN---------HGCPVESVLALPSGSLIA 212 (487)
T ss_pred eeccc--cCC-Ce--EEEecCCCceEEEEEeccCCc-----------eeEEec---------CCCceeeEEEcCCCCEEE
Confidence 99995 322 22 567899999999999744311 122333 667777999999999887
Q ss_pred EeccCCCcEEEEEeecC
Q 001070 292 FANAKKNAIYSVHLGYG 308 (1165)
Q Consensus 292 Lan~~r~aIYalhl~~g 308 (1165)
.| ..|.|-+.-+-.|
T Consensus 213 sA--gGn~vkVWDl~~G 227 (487)
T KOG0310|consen 213 SA--GGNSVKVWDLTTG 227 (487)
T ss_pred Ec--CCCeEEEEEecCC
Confidence 65 4566666666643
No 62
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.36 E-value=6.9e-07 Score=102.25 Aligned_cols=87 Identities=16% Similarity=0.374 Sum_probs=77.8
Q ss_pred cEeeecCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc-------------------------EEEeecCCCceeEEecC
Q 001070 151 RQIAVNKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK-------------------------IKIWEDSKVAPLIILKP 204 (1165)
Q Consensus 151 R~IAVn~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q-------------------------VriWD~~~g~pl~~lep 204 (1165)
-+|+=||||+..-+.+..|+.||++- .+-.-..||.| |+||+-.+|-|+.+|-+
T Consensus 401 ~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG 480 (519)
T KOG0293|consen 401 FSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG 480 (519)
T ss_pred EEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC
Confidence 45888999999999999999999997 66667889988 99999999999999998
Q ss_pred CCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEcc
Q 001070 205 HGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASA 243 (1165)
Q Consensus 205 hdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a 243 (1165)
|. ..|++|+| .|-.|. +++||+-|.|||||-.+
T Consensus 481 Hs-~~vNcVsw--NP~~p~---m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 481 HS-KTVNCVSW--NPADPE---MFASASDDGTIRIWGPS 513 (519)
T ss_pred Cc-ceeeEEec--CCCCHH---HhhccCCCCeEEEecCC
Confidence 85 59999999 677776 89999999999999864
No 63
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.34 E-value=8.5e-07 Score=101.45 Aligned_cols=127 Identities=17% Similarity=0.258 Sum_probs=100.1
Q ss_pred eeecCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCCCceeEEecCCCCCC
Q 001070 153 IAVNKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSKVAPLIILKPHGGQP 209 (1165)
Q Consensus 153 IAVn~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~g~pl~~lephdG~s 209 (1165)
++-|++-.|+.+.||.|||||-.. .--..|+||.= ||+||.++|.+|.++-.| -+.
T Consensus 188 fSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~H-Knt 266 (464)
T KOG0284|consen 188 FSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGH-KNT 266 (464)
T ss_pred cCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhc-cce
Confidence 444677778999999999999997 66667899986 999999999999999888 369
Q ss_pred cceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcE
Q 001070 210 VNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGL 289 (1165)
Q Consensus 210 V~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ 289 (1165)
|..|-| .|++ -+|+ +||-|..+|++|+.+- +=+++++ +|++++..+.-+|--.=
T Consensus 267 Vl~~~f--~~n~---N~Ll-t~skD~~~kv~DiR~m------------kEl~~~r--------~Hkkdv~~~~WhP~~~~ 320 (464)
T KOG0284|consen 267 VLAVKF--NPNG---NWLL-TGSKDQSCKVFDIRTM------------KELFTYR--------GHKKDVTSLTWHPLNES 320 (464)
T ss_pred EEEEEE--cCCC---CeeE-EccCCceEEEEehhHh------------HHHHHhh--------cchhhheeecccccccc
Confidence 999999 5777 3366 5999999999998422 3344454 68999999988888776
Q ss_pred EEEeccCCCcEEEEEee
Q 001070 290 LLFANAKKNAIYSVHLG 306 (1165)
Q Consensus 290 ilLan~~r~aIYalhl~ 306 (1165)
||.+-..-..||.-++.
T Consensus 321 lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 321 LFTSGGSDGSVVHWVVG 337 (464)
T ss_pred ceeeccCCCceEEEecc
Confidence 66666666666665555
No 64
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.32 E-value=2e-06 Score=93.89 Aligned_cols=144 Identities=17% Similarity=0.216 Sum_probs=107.4
Q ss_pred cCceEEEeecCCcEEEEeCcchhhHhhcCCcc----------------------EEEeecCCCc--eeEEecCCCCCCcc
Q 001070 156 NKHYVCYGLKGGNVRVLNLNTATRSLLRGHTK----------------------IKIWEDSKVA--PLIILKPHGGQPVN 211 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t~ir~llrGH~q----------------------VriWD~~~g~--pl~~lephdG~sV~ 211 (1165)
+.-+|++...|-+||.|-..|.++.----|.. ||++|++++. |+..|++|. +-|.
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~-kNVt 87 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHT-KNVT 87 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccC-CceE
Confidence 45688999999999999998866653333333 9999999874 799999995 4899
Q ss_pred eeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEE
Q 001070 212 SAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLL 291 (1165)
Q Consensus 212 SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~il 291 (1165)
+|.| .-|++.+.| |+-|.++||||+-. -.|-.-|.+ .+-+|.|+++|...-|+
T Consensus 88 aVgF-----~~dgrWMyT-gseDgt~kIWdlR~------------~~~qR~~~~---------~spVn~vvlhpnQteLi 140 (311)
T KOG0315|consen 88 AVGF-----QCDGRWMYT-GSEDGTVKIWDLRS------------LSCQRNYQH---------NSPVNTVVLHPNQTELI 140 (311)
T ss_pred EEEE-----eecCeEEEe-cCCCceEEEEeccC------------cccchhccC---------CCCcceEEecCCcceEE
Confidence 9999 356676775 88999999999844 388888885 46788999999998888
Q ss_pred EeccCCCcEEEEEeecCCCcccccccccccccc---ccceeeeeeccCC
Q 001070 292 FANAKKNAIYSVHLGYGNNSAATRIDYIAEFTV---TMPVLSFTGTIDP 337 (1165)
Q Consensus 292 Lan~~r~aIYalhl~~g~~~~~~r~dyiaeF~v---~~PILSft~~~d~ 337 (1165)
..|-.. +|.+--|... .+.+-.+ -.||=|+++.+|+
T Consensus 141 s~dqsg-~irvWDl~~~---------~c~~~liPe~~~~i~sl~v~~dg 179 (311)
T KOG0315|consen 141 SGDQSG-NIRVWDLGEN---------SCTHELIPEDDTSIQSLTVMPDG 179 (311)
T ss_pred eecCCC-cEEEEEccCC---------ccccccCCCCCcceeeEEEcCCC
Confidence 887654 4555555432 1122222 2678888888777
No 65
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.31 E-value=2.1e-06 Score=95.78 Aligned_cols=91 Identities=16% Similarity=0.328 Sum_probs=76.0
Q ss_pred CceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCCCce-eEEecCCCCCCcce
Q 001070 157 KHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSKVAP-LIILKPHGGQPVNS 212 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~g~p-l~~lephdG~sV~S 212 (1165)
|+-++||+-|++--+||..+ -+-+.|.||.+ .|+||.+...+ |.+|.+|. +.|.|
T Consensus 284 g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt-dtVTS 362 (481)
T KOG0300|consen 284 GQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT-DTVTS 362 (481)
T ss_pred cceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccc-cceeE
Confidence 88888999999999999999 88889999998 99999998754 99999994 69999
Q ss_pred eEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEecc
Q 001070 213 AQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLK 266 (1165)
Q Consensus 213 VaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~ 266 (1165)
+.|- .|- -|+|||-|||||+|||-.-+ .-+-|++..
T Consensus 363 ~vF~-----~dd--~vVSgSDDrTvKvWdLrNMR-----------splATIRtd 398 (481)
T KOG0300|consen 363 VVFN-----TDD--RVVSGSDDRTVKVWDLRNMR-----------SPLATIRTD 398 (481)
T ss_pred EEEe-----cCC--ceeecCCCceEEEeeecccc-----------CcceeeecC
Confidence 9993 332 36689999999999995543 345677753
No 66
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.30 E-value=2.3e-06 Score=104.21 Aligned_cols=125 Identities=12% Similarity=0.221 Sum_probs=104.2
Q ss_pred cEeeecC--ceEEEeecCCcEEEEeCcc-hhhH-hhcCCcc--------------------EEEeecCCCceeEEecCCC
Q 001070 151 RQIAVNK--HYVCYGLKGGNVRVLNLNT-ATRS-LLRGHTK--------------------IKIWEDSKVAPLIILKPHG 206 (1165)
Q Consensus 151 R~IAVn~--~yIayG~kdg~IRVwdi~t-~ir~-llrGH~q--------------------VriWD~~~g~pl~~lephd 206 (1165)
+.+|+|+ +-++++.-+|.+..||.++ .... +--||+. |+|.|+.+..=++.|.+|
T Consensus 497 ~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh- 575 (910)
T KOG1539|consen 497 TGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH- 575 (910)
T ss_pred eEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc-
Confidence 4588985 5599999999999999998 4333 4457776 999999988779999999
Q ss_pred CCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecC
Q 001070 207 GQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQ 286 (1165)
Q Consensus 207 G~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~ 286 (1165)
|+.++..+|. +|++.|| +++.|.+|++||+.++ .|+.-|-+ ++-+.++.++|-
T Consensus 576 ~nritd~~FS-----~DgrWli-sasmD~tIr~wDlpt~------------~lID~~~v---------d~~~~sls~SPn 628 (910)
T KOG1539|consen 576 GNRITDMTFS-----PDGRWLI-SASMDSTIRTWDLPTG------------TLIDGLLV---------DSPCTSLSFSPN 628 (910)
T ss_pred ccceeeeEeC-----CCCcEEE-EeecCCcEEEEeccCc------------ceeeeEec---------CCcceeeEECCC
Confidence 7899999994 4556455 6999999999999665 99999997 566778999999
Q ss_pred CcEEEEeccCCCcEEEE
Q 001070 287 AGLLLFANAKKNAIYSV 303 (1165)
Q Consensus 287 a~~ilLan~~r~aIYal 303 (1165)
+.||..++..-|.||--
T Consensus 629 gD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 629 GDFLATVHVDQNGIYLW 645 (910)
T ss_pred CCEEEEEEecCceEEEE
Confidence 99999999999999964
No 67
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.27 E-value=4.4e-06 Score=93.05 Aligned_cols=119 Identities=22% Similarity=0.355 Sum_probs=95.4
Q ss_pred CceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCC---Cc-eeEEecCCC---
Q 001070 157 KHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSK---VA-PLIILKPHG--- 206 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~---g~-pl~~lephd--- 206 (1165)
+.-+.+|.=|+.|+|||+.. ...++|+||.. |||||++. ++ +|.+|++|.
T Consensus 186 s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf 265 (338)
T KOG0265|consen 186 SDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF 265 (338)
T ss_pred ccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhh
Confidence 55566788899999999987 88999999999 99999986 33 499999885
Q ss_pred CCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecC
Q 001070 207 GQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQ 286 (1165)
Q Consensus 207 G~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~ 286 (1165)
++-.-..+| +|++.. |++|+.||-+-+||..+. .|+.-|. ||.--+|.|.++|.
T Consensus 266 eknlL~csw--sp~~~~----i~ags~dr~vyvwd~~~r------------~~lyklp--------Gh~gsvn~~~Fhp~ 319 (338)
T KOG0265|consen 266 EKNLLKCSW--SPNGTK----ITAGSADRFVYVWDTTSR------------RILYKLP--------GHYGSVNEVDFHPT 319 (338)
T ss_pred hhhcceeec--cCCCCc----cccccccceEEEeecccc------------cEEEEcC--------CcceeEEEeeecCC
Confidence 234555666 687766 889999999999997444 6777777 47788999999999
Q ss_pred CcEEEEeccCCCcEEE
Q 001070 287 AGLLLFANAKKNAIYS 302 (1165)
Q Consensus 287 a~~ilLan~~r~aIYa 302 (1165)
-.+|+.+-..| .||-
T Consensus 320 e~iils~~sdk-~i~l 334 (338)
T KOG0265|consen 320 EPIILSCSSDK-TIYL 334 (338)
T ss_pred CcEEEEeccCc-eeEe
Confidence 99988877665 4553
No 68
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.26 E-value=5.6e-06 Score=93.98 Aligned_cols=196 Identities=20% Similarity=0.311 Sum_probs=129.0
Q ss_pred Cceee-cC----CceEEecccCCCCCCCCCCc--ccccccccCCCcccccccEeeecCceEEEeecCCcEEEEeCcc-hh
Q 001070 107 YGKRV-FG----DYVAYDVDAVEEGREPTQQL--EVNPITKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNT-AT 178 (1165)
Q Consensus 107 ~Gr~l-~g----~~~~~dVd~~~~ge~~~pql--ev~pIt~Y~sd~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t-~i 178 (1165)
+|-+| +| .-.||++.+... + -.+ ++.=|.---|-| +| .+|+.|.+||.|..|.|.+ ..
T Consensus 117 dgtlLATGdmsG~v~v~~~stg~~---~-~~~~~e~~dieWl~WHp-------~a---~illAG~~DGsvWmw~ip~~~~ 182 (399)
T KOG0296|consen 117 DGTLLATGDMSGKVLVFKVSTGGE---Q-WKLDQEVEDIEWLKWHP-------RA---HILLAGSTDGSVWMWQIPSQAL 182 (399)
T ss_pred CceEEEecCCCccEEEEEcccCce---E-EEeecccCceEEEEecc-------cc---cEEEeecCCCcEEEEECCCcce
Confidence 68888 55 456788877443 3 122 344444334433 33 6788999999999999999 99
Q ss_pred hHhhcCCcc----------------------EEEeecCCCceeEEecCCCC-----------------------------
Q 001070 179 RSLLRGHTK----------------------IKIWEDSKVAPLIILKPHGG----------------------------- 207 (1165)
Q Consensus 179 r~llrGH~q----------------------VriWD~~~g~pl~~lephdG----------------------------- 207 (1165)
..++.||.+ ||+|+-.+|+|+++...-+|
T Consensus 183 ~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~ 262 (399)
T KOG0296|consen 183 CKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNN 262 (399)
T ss_pred eeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEcc
Confidence 999999999 99999999999888873322
Q ss_pred ---------------------CCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEecc
Q 001070 208 ---------------------QPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLK 266 (1165)
Q Consensus 208 ---------------------~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~ 266 (1165)
+.+.||.|+ |-...-. |.+.|++|++|-|||++.- +-.--++
T Consensus 263 ~sgKVv~~~n~~~~~l~~~~e~~~esve~~--~~ss~lp-L~A~G~vdG~i~iyD~a~~------------~~R~~c~-- 325 (399)
T KOG0296|consen 263 GSGKVVNCNNGTVPELKPSQEELDESVESI--PSSSKLP-LAACGSVDGTIAIYDLAAS------------TLRHICE-- 325 (399)
T ss_pred ccceEEEecCCCCccccccchhhhhhhhhc--ccccccc-hhhcccccceEEEEecccc------------hhheecc--
Confidence 122222231 2112222 5667999999999998654 2111112
Q ss_pred CCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEeecCCCccccccccccccccccceeeeeeccCC------CCc
Q 001070 267 SSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGYGNNSAATRIDYIAEFTVTMPVLSFTGTIDP------PSE 340 (1165)
Q Consensus 267 ~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~g~~~~~~r~dyiaeF~v~~PILSft~~~d~------~ge 340 (1165)
|+.=+-++...+ ..+|+-|.+. -.||..-..-| ...|+|-.. .++||=|....+. .++
T Consensus 326 -------he~~V~~l~w~~-t~~l~t~c~~-g~v~~wDaRtG----~l~~~y~GH---~~~Il~f~ls~~~~~vvT~s~D 389 (399)
T KOG0296|consen 326 -------HEDGVTKLKWLN-TDYLLTACAN-GKVRQWDARTG----QLKFTYTGH---QMGILDFALSPQKRLVVTVSDD 389 (399)
T ss_pred -------CCCceEEEEEcC-cchheeeccC-ceEEeeecccc----ceEEEEecC---chheeEEEEcCCCcEEEEecCC
Confidence 333344666667 5666655554 45665544432 346777665 4799999888877 577
Q ss_pred ceEEEEEee
Q 001070 341 HIIKLYCVQ 349 (1165)
Q Consensus 341 ~~vq~yCvQ 349 (1165)
...+||||+
T Consensus 390 ~~a~VF~v~ 398 (399)
T KOG0296|consen 390 NTALVFEVP 398 (399)
T ss_pred CeEEEEecC
Confidence 889999997
No 69
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=98.26 E-value=2.9e-06 Score=96.61 Aligned_cols=129 Identities=20% Similarity=0.340 Sum_probs=101.5
Q ss_pred eee--cCceEEEeecCCcEEEEeCcc-----------------------hhh---HhhcCCcc-----------------
Q 001070 153 IAV--NKHYVCYGLKGGNVRVLNLNT-----------------------ATR---SLLRGHTK----------------- 187 (1165)
Q Consensus 153 IAV--n~~yIayG~kdg~IRVwdi~t-----------------------~ir---~llrGH~q----------------- 187 (1165)
|+| +|..+|+|+-|.+|.|||-.+ ..| .+|.||++
T Consensus 199 Vsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~S 278 (423)
T KOG0313|consen 199 VSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVS 278 (423)
T ss_pred EEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeec
Confidence 666 489999999999999999110 122 27899998
Q ss_pred ----EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEE
Q 001070 188 ----IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTL 263 (1165)
Q Consensus 188 ----VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTL 263 (1165)
||+||+.+|....++.. +.+.++|.++ +.-. ||++|+.||.|+|||--.+. +-.-.|+|
T Consensus 279 wDHTIk~WDletg~~~~~~~~--~ksl~~i~~~-----~~~~-Ll~~gssdr~irl~DPR~~~---------gs~v~~s~ 341 (423)
T KOG0313|consen 279 WDHTIKVWDLETGGLKSTLTT--NKSLNCISYS-----PLSK-LLASGSSDRHIRLWDPRTGD---------GSVVSQSL 341 (423)
T ss_pred ccceEEEEEeecccceeeeec--CcceeEeecc-----cccc-eeeecCCCCceeecCCCCCC---------CceeEEee
Confidence 99999999988777763 5799999995 3333 78899999999999975553 33667888
Q ss_pred eccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEee
Q 001070 264 DLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLG 306 (1165)
Q Consensus 264 e~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~ 306 (1165)
. +|+.++..|.-+|...|.|++-..-|.+-.--+.
T Consensus 342 ~--------gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 342 I--------GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred e--------cchhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence 8 4889999999999999999998777665544443
No 70
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=98.24 E-value=1.8e-06 Score=103.68 Aligned_cols=107 Identities=22% Similarity=0.348 Sum_probs=85.4
Q ss_pred cCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc---------------------EEEeecCCCceeEEecCCCCCCccee
Q 001070 156 NKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK---------------------IKIWEDSKVAPLIILKPHGGQPVNSA 213 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q---------------------VriWD~~~g~pl~~lephdG~sV~SV 213 (1165)
++-.||.|..|+.|-||...+ .=-.+|+||++ +|||-. |.++..|++|. -+|.+|
T Consensus 70 ~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~-asVWAv 146 (745)
T KOG0301|consen 70 DKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHT-ASVWAV 146 (745)
T ss_pred cCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcc-hheeee
Confidence 334478899999999999999 44559999999 788854 66778898884 499999
Q ss_pred EeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEe
Q 001070 214 QYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFA 293 (1165)
Q Consensus 214 aFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLa 293 (1165)
++| |++ . +| +|+.||+||||.- .+|++||.+ |.+.+-.+++.++++||=.+
T Consensus 147 ~~l--~e~---~-~v-TgsaDKtIklWk~--------------~~~l~tf~g--------HtD~VRgL~vl~~~~flScs 197 (745)
T KOG0301|consen 147 ASL--PEN---T-YV-TGSADKTIKLWKG--------------GTLLKTFSG--------HTDCVRGLAVLDDSHFLSCS 197 (745)
T ss_pred eec--CCC---c-EE-eccCcceeeeccC--------------Cchhhhhcc--------chhheeeeEEecCCCeEeec
Confidence 998 444 3 45 5999999999983 489999994 88889899988887665544
Q ss_pred c
Q 001070 294 N 294 (1165)
Q Consensus 294 n 294 (1165)
|
T Consensus 198 N 198 (745)
T KOG0301|consen 198 N 198 (745)
T ss_pred C
Confidence 4
No 71
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=98.24 E-value=7.9e-06 Score=88.17 Aligned_cols=128 Identities=20% Similarity=0.327 Sum_probs=90.5
Q ss_pred ecCceEEEeecCCcEEEEeCcchhhHhhcCCcc----------------------------------EEEeecCCCceeE
Q 001070 155 VNKHYVCYGLKGGNVRVLNLNTATRSLLRGHTK----------------------------------IKIWEDSKVAPLI 200 (1165)
Q Consensus 155 Vn~~yIayG~kdg~IRVwdi~t~ir~llrGH~q----------------------------------VriWD~~~g~pl~ 200 (1165)
.+|..||+|+.|+.|+|+-.+..-+. +.||+- |+|=|-..|++++
T Consensus 99 ~~geliatgsndk~ik~l~fn~dt~~-~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~ 177 (350)
T KOG0641|consen 99 PCGELIATGSNDKTIKVLPFNADTCN-ATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFH 177 (350)
T ss_pred CccCeEEecCCCceEEEEeccccccc-ccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcce
Confidence 36788889999999999766643222 345554 7777888899999
Q ss_pred EecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEE
Q 001070 201 ILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQ 280 (1165)
Q Consensus 201 ~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~s 280 (1165)
-+.+|.||-.--..| .+ + +++|||+|+||+.||+-. ..|+.||.-.--.. .-+..-+-.
T Consensus 178 a~sghtghilalysw------n~-~-m~~sgsqdktirfwdlrv------------~~~v~~l~~~~~~~-glessavaa 236 (350)
T KOG0641|consen 178 ALSGHTGHILALYSW------NG-A-MFASGSQDKTIRFWDLRV------------NSCVNTLDNDFHDG-GLESSAVAA 236 (350)
T ss_pred eecCCcccEEEEEEe------cC-c-EEEccCCCceEEEEeeec------------cceeeeccCcccCC-CcccceeEE
Confidence 999999984433445 22 2 678999999999999944 38999987311111 113345679
Q ss_pred EEeecCCcEEEEeccCCC-cEEEEE
Q 001070 281 VVVLSQAGLLLFANAKKN-AIYSVH 304 (1165)
Q Consensus 281 V~~~p~a~~ilLan~~r~-aIYalh 304 (1165)
|+++|.+++|+-..+... .+|-+.
T Consensus 237 v~vdpsgrll~sg~~dssc~lydir 261 (350)
T KOG0641|consen 237 VAVDPSGRLLASGHADSSCMLYDIR 261 (350)
T ss_pred EEECCCcceeeeccCCCceEEEEee
Confidence 999999999988777643 355543
No 72
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.21 E-value=5.1e-05 Score=80.31 Aligned_cols=128 Identities=8% Similarity=0.119 Sum_probs=87.0
Q ss_pred eeecCceE-EEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCCCceeEEecCCCCC
Q 001070 153 IAVNKHYV-CYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSKVAPLIILKPHGGQ 208 (1165)
Q Consensus 153 IAVn~~yI-ayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~g~pl~~lephdG~ 208 (1165)
+.-||+++ +++..++.|++||..+ .+...+..|.. |++||.+++..+..++. |.
T Consensus 38 ~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~--~~ 115 (300)
T TIGR03866 38 LSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV--GV 115 (300)
T ss_pred ECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC--CC
Confidence 33367776 5677899999999987 44333433332 99999998877777753 35
Q ss_pred CcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCc
Q 001070 209 PVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAG 288 (1165)
Q Consensus 209 sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~ 288 (1165)
.+.+++| .|++ .+++++...+..+..|+..+ ++|+.++... + -...++++|+++
T Consensus 116 ~~~~~~~--~~dg---~~l~~~~~~~~~~~~~d~~~------------~~~~~~~~~~-------~--~~~~~~~s~dg~ 169 (300)
T TIGR03866 116 EPEGMAV--SPDG---KIVVNTSETTNMAHFIDTKT------------YEIVDNVLVD-------Q--RPRFAEFTADGK 169 (300)
T ss_pred CcceEEE--CCCC---CEEEEEecCCCeEEEEeCCC------------CeEEEEEEcC-------C--CccEEEECCCCC
Confidence 6788999 4544 44666555556777888633 3666655421 1 123578899999
Q ss_pred EEEEeccCCCcEEEEEeecC
Q 001070 289 LLLFANAKKNAIYSVHLGYG 308 (1165)
Q Consensus 289 ~ilLan~~r~aIYalhl~~g 308 (1165)
+|+++......||.+-+..+
T Consensus 170 ~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 170 ELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred EEEEEcCCCCEEEEEEcCcc
Confidence 99888777788888877654
No 73
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.20 E-value=9.5e-06 Score=90.69 Aligned_cols=166 Identities=16% Similarity=0.326 Sum_probs=100.9
Q ss_pred ecCCceEEecccCCCCCCCCCCcccccccccCCCccccccc-EeeecCceEEEeecCCcEEEEeCcc-----hhhHhhcC
Q 001070 111 VFGDYVAYDVDAVEEGREPTQQLEVNPITKYGSDPELLIGR-QIAVNKHYVCYGLKGGNVRVLNLNT-----ATRSLLRG 184 (1165)
Q Consensus 111 l~g~~~~~dVd~~~~ge~~~pqlev~pIt~Y~sd~~~~~GR-~IAVn~~yIayG~kdg~IRVwdi~t-----~ir~llrG 184 (1165)
..|-...||.|+.---... +..| |+|-+..+.+..- -++-||.++|||+-|--|+|+|... ..+....|
T Consensus 82 ~~giDle~dadaq~~s~e~-~~yE----t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~ 156 (430)
T KOG0640|consen 82 TAGIDLEFDADAQGSSPEP-SEYE----TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISG 156 (430)
T ss_pred cCceeeeeccccccCCCCC-cccc----eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccC
Confidence 3566677777763221111 1111 3444444333211 1667899999999999999999872 33444444
Q ss_pred Ccc-----------------------------------------------------------------------------
Q 001070 185 HTK----------------------------------------------------------------------------- 187 (1165)
Q Consensus 185 H~q----------------------------------------------------------------------------- 187 (1165)
-+|
T Consensus 157 ~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTd 236 (430)
T KOG0640|consen 157 DTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTD 236 (430)
T ss_pred CcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecC
Confidence 444
Q ss_pred ---EEEeecCCCceeEEecCCCCC--CcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEE
Q 001070 188 ---IKIWEDSKVAPLIILKPHGGQ--PVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQT 262 (1165)
Q Consensus 188 ---VriWD~~~g~pl~~lephdG~--sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QT 262 (1165)
+|+||+.+-++...-.|-|+| .|.+|-|. + .+...| .||-|..|||||- .+.+|+.|
T Consensus 237 Hp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys--~---t~~lYv-TaSkDG~IklwDG------------VS~rCv~t 298 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYS--S---TGSLYV-TASKDGAIKLWDG------------VSNRCVRT 298 (430)
T ss_pred CCceeEEeccceeEeeecCcccccccceeEEEec--C---CccEEE-EeccCCcEEeecc------------ccHHHHHH
Confidence 566666665555555566665 78888883 3 345355 5999999999994 46699999
Q ss_pred EeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEee
Q 001070 263 LDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLG 306 (1165)
Q Consensus 263 Le~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~ 306 (1165)
|.-.+ +...++ +..++-.+.|||-+ -+-..+|--+|.
T Consensus 299 ~~~AH-----~gsevc-Sa~Ftkn~kyiLsS-G~DS~vkLWEi~ 335 (430)
T KOG0640|consen 299 IGNAH-----GGSEVC-SAVFTKNGKYILSS-GKDSTVKLWEIS 335 (430)
T ss_pred HHhhc-----CCceee-eEEEccCCeEEeec-CCcceeeeeeec
Confidence 98422 112333 66677788777644 333444444444
No 74
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.20 E-value=7.4e-06 Score=91.33 Aligned_cols=123 Identities=19% Similarity=0.332 Sum_probs=85.3
Q ss_pred CceEEEeecCCcEEEEeCcch---hhHhhcCCcc----------------------EEEeecCCCceeEEecCCCCCCcc
Q 001070 157 KHYVCYGLKGGNVRVLNLNTA---TRSLLRGHTK----------------------IKIWEDSKVAPLIILKPHGGQPVN 211 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~t~---ir~llrGH~q----------------------VriWD~~~g~pl~~lephdG~sV~ 211 (1165)
+.+||.|+=||+||||+++.. +-.....|.+ +|+||..+|+ +...--||| +|-
T Consensus 40 ~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~-pvk 117 (347)
T KOG0647|consen 40 DNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDA-PVK 117 (347)
T ss_pred CceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeeccc-cee
Confidence 446678999999999999973 2234455555 9999999996 788888987 999
Q ss_pred eeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEE
Q 001070 212 SAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLL 291 (1165)
Q Consensus 212 SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~il 291 (1165)
.+.|+..++- . +|..||-|||||.||.-. -+-+-|+.++ ++-+. .|=--.+++
T Consensus 118 t~~wv~~~~~---~-cl~TGSWDKTlKfWD~R~------------~~pv~t~~LP-------eRvYa----~Dv~~pm~v 170 (347)
T KOG0647|consen 118 TCHWVPGMNY---Q-CLVTGSWDKTLKFWDTRS------------SNPVATLQLP-------ERVYA----ADVLYPMAV 170 (347)
T ss_pred EEEEecCCCc---c-eeEecccccceeecccCC------------CCeeeeeecc-------ceeee----hhccCceeE
Confidence 9999855542 3 444699999999999733 3667777762 33332 222334677
Q ss_pred EeccCCCcEEEEEeecCC
Q 001070 292 FANAKKNAIYSVHLGYGN 309 (1165)
Q Consensus 292 Lan~~r~aIYalhl~~g~ 309 (1165)
+|-+.|+ |-+.-|+.++
T Consensus 171 Vata~r~-i~vynL~n~~ 187 (347)
T KOG0647|consen 171 VATAERH-IAVYNLENPP 187 (347)
T ss_pred EEecCCc-EEEEEcCCCc
Confidence 7777765 3344444433
No 75
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.19 E-value=9.3e-06 Score=94.34 Aligned_cols=150 Identities=21% Similarity=0.271 Sum_probs=109.8
Q ss_pred CCcccccccccCCCcc--cccccEeee----cCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------
Q 001070 131 QQLEVNPITKYGSDPE--LLIGRQIAV----NKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK---------------- 187 (1165)
Q Consensus 131 pqlev~pIt~Y~sd~~--~~~GR~IAV----n~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q---------------- 187 (1165)
|.|.+-+|.|-.-+.. -..|--.|+ +|.||+-|...|.|-+|-.+| .+-..|++|-|
T Consensus 61 p~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiT 140 (476)
T KOG0646|consen 61 PLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIIT 140 (476)
T ss_pred ccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEe
Confidence 4666666665333321 122555555 599999999999999999999 88889999999
Q ss_pred ------EEEeecCC---------CceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCC
Q 001070 188 ------IKIWEDSK---------VAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPT 252 (1165)
Q Consensus 188 ------VriWD~~~---------g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~ 252 (1165)
|.||++.. -.|++.|-.| +-+|.++-- .+-|.+.+ |+ +.|+|+|+|+||+..+
T Consensus 141 gskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H-tlsITDl~i--g~Gg~~~r-l~-TaS~D~t~k~wdlS~g------- 208 (476)
T KOG0646|consen 141 GSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH-TLSITDLQI--GSGGTNAR-LY-TASEDRTIKLWDLSLG------- 208 (476)
T ss_pred cCCCccEEEEEEEeecccccCCCccceeeeccC-cceeEEEEe--cCCCccce-EE-EecCCceEEEEEeccc-------
Confidence 99998643 2489999877 568888766 33345545 55 5889999999999776
Q ss_pred CCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEeec
Q 001070 253 HAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGY 307 (1165)
Q Consensus 253 ~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~ 307 (1165)
.-+-|+.|+++ ...|++||...-+.+.+... .||..-+..
T Consensus 209 -----~LLlti~fp~s---------i~av~lDpae~~~yiGt~~G-~I~~~~~~~ 248 (476)
T KOG0646|consen 209 -----VLLLTITFPSS---------IKAVALDPAERVVYIGTEEG-KIFQNLLFK 248 (476)
T ss_pred -----eeeEEEecCCc---------ceeEEEcccccEEEecCCcc-eEEeeehhc
Confidence 78889998543 34789999888887776653 456555544
No 76
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=98.16 E-value=2.6e-06 Score=96.38 Aligned_cols=135 Identities=21% Similarity=0.331 Sum_probs=97.1
Q ss_pred cccccccEeee-----c--CceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecC
Q 001070 145 PELLIGRQIAV-----N--KHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDS 194 (1165)
Q Consensus 145 ~~~~~GR~IAV-----n--~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~ 194 (1165)
...|.|.+=+| . -..|++|.+|-.||||||.| ..-+.|.||.. ||+||.+
T Consensus 228 IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~ 307 (460)
T KOG0285|consen 228 IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLR 307 (460)
T ss_pred HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeec
Confidence 34456766444 2 46799999999999999999 67779999998 9999999
Q ss_pred CCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccc
Q 001070 195 KVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVE 274 (1165)
Q Consensus 195 ~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~ 274 (1165)
.|.-+-++.-| -.+|.+++. .|. -++++|++-| .||-|++.-+ ..++-|. +|
T Consensus 308 agkt~~tlt~h-kksvral~l--hP~----e~~fASas~d-nik~w~~p~g------------~f~~nls--------gh 359 (460)
T KOG0285|consen 308 AGKTMITLTHH-KKSVRALCL--HPK----ENLFASASPD-NIKQWKLPEG------------EFLQNLS--------GH 359 (460)
T ss_pred cCceeEeeecc-cceeeEEec--CCc----hhhhhccCCc-cceeccCCcc------------chhhccc--------cc
Confidence 99878888766 358888887 333 2467777776 5888998444 3333355 58
Q ss_pred cccEEEEEeecCCcEEEEeccCCCcEEEEEeecCC
Q 001070 275 EAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGYGN 309 (1165)
Q Consensus 275 ~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~g~ 309 (1165)
.+.+|.+.+..|+- +++-..+-.|..-...-|.
T Consensus 360 ~~iintl~~nsD~v--~~~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 360 NAIINTLSVNSDGV--LVSGGDNGSIMFWDWKSGH 392 (460)
T ss_pred cceeeeeeeccCce--EEEcCCceEEEEEecCcCc
Confidence 89999998888874 4455555555554444433
No 77
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.15 E-value=1.1e-05 Score=96.56 Aligned_cols=93 Identities=19% Similarity=0.368 Sum_probs=72.4
Q ss_pred eecCceEEEeecCCcEEEEeCcch------------hhHhhcCCcc----------------------EEEeecCCCcee
Q 001070 154 AVNKHYVCYGLKGGNVRVLNLNTA------------TRSLLRGHTK----------------------IKIWEDSKVAPL 199 (1165)
Q Consensus 154 AVn~~yIayG~kdg~IRVwdi~t~------------ir~llrGH~q----------------------VriWD~~~g~pl 199 (1165)
|-|.-..|+|.=|+.|.||||++. ..+|-.||.. +||||-+++.-+
T Consensus 127 ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki 206 (735)
T KOG0308|consen 127 AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI 206 (735)
T ss_pred ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccce
Confidence 336666788999999999999952 3345557766 999999999889
Q ss_pred EEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEec
Q 001070 200 IILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDL 265 (1165)
Q Consensus 200 ~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~ 265 (1165)
.++++|. +-|-.+.-. .|| .-+| |||.|.||||||+... +|+.|+..
T Consensus 207 mkLrGHT-dNVr~ll~~--dDG---t~~l-s~sSDgtIrlWdLgqQ------------rCl~T~~v 253 (735)
T KOG0308|consen 207 MKLRGHT-DNVRVLLVN--DDG---TRLL-SASSDGTIRLWDLGQQ------------RCLATYIV 253 (735)
T ss_pred eeeeccc-cceEEEEEc--CCC---CeEe-ecCCCceEEeeecccc------------ceeeeEEe
Confidence 9999884 467777773 444 4366 7999999999999554 99999885
No 78
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.14 E-value=2.1e-06 Score=103.42 Aligned_cols=83 Identities=22% Similarity=0.376 Sum_probs=66.1
Q ss_pred cCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCCCceeEEecCCCCCCcce
Q 001070 156 NKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSKVAPLIILKPHGGQPVNS 212 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~g~pl~~lephdG~sV~S 212 (1165)
+...|+.|.-+|.|||||+.. .+-..|.||.- .+|||.++-.|.+++.+|. .-|.+
T Consensus 81 ~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~-~vv~~ 159 (825)
T KOG0267|consen 81 SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHT-RVVDV 159 (825)
T ss_pred chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCc-ceeEE
Confidence 467788999999999999998 55558889987 8999999655599999874 37999
Q ss_pred eEeecCCCCCCceEEEeecCCCceEEEeEccCc
Q 001070 213 AQYLTAPNQAGHIILVTAGPLNREVKLWASASE 245 (1165)
Q Consensus 213 VaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~ 245 (1165)
+.|. ||+++++.+| -|.++||||+..+
T Consensus 160 l~ls-----P~Gr~v~~g~-ed~tvki~d~~ag 186 (825)
T KOG0267|consen 160 LRLS-----PDGRWVASGG-EDNTVKIWDLTAG 186 (825)
T ss_pred Eeec-----CCCceeeccC-Ccceeeeeccccc
Confidence 9994 5556456544 5999999998444
No 79
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.12 E-value=4.7e-06 Score=93.65 Aligned_cols=82 Identities=17% Similarity=0.325 Sum_probs=68.8
Q ss_pred ceEEEeecCCcEEEEeCcc-hhhHhhcCCcc-----------------------EEEeecCCCceeEEecCCCCC--Ccc
Q 001070 158 HYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK-----------------------IKIWEDSKVAPLIILKPHGGQ--PVN 211 (1165)
Q Consensus 158 ~yIayG~kdg~IRVwdi~t-~ir~llrGH~q-----------------------VriWD~~~g~pl~~lephdG~--sV~ 211 (1165)
-|+|-|..-|.|||+|..+ ..-.-++||.+ ||+|++++..+|.+|-+..|| -|-
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVL 185 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVL 185 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEE
Confidence 3566666899999999999 55558999998 999999999999999998888 999
Q ss_pred eeEeecCCCCCCceEEEeecCCCceEEEeEccCc
Q 001070 212 SAQYLTAPNQAGHIILVTAGPLNREVKLWASASE 245 (1165)
Q Consensus 212 SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~ 245 (1165)
||-|. +++.+++ |+.-|..||+|++...
T Consensus 186 SvD~~-----~~gd~i~-ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 186 SVDFS-----LDGDRIA-SCGMDHSLKLWRLNVK 213 (385)
T ss_pred EEEEc-----CCCCeee-ccCCcceEEEEecChh
Confidence 99993 4445445 6779999999999744
No 80
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.11 E-value=1.4e-05 Score=89.57 Aligned_cols=111 Identities=14% Similarity=0.180 Sum_probs=87.7
Q ss_pred cccEeeecCceEEEeecCCcEEEEeCcc-hhhHhhcCCccEEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEE
Q 001070 149 IGRQIAVNKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTKIKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIIL 227 (1165)
Q Consensus 149 ~GR~IAVn~~yIayG~kdg~IRVwdi~t-~ir~llrGH~qVriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~l 227 (1165)
.-=++.-+|.|||.|.-||.|-|||..| ++-.+|.+|. ++|.|++|. +|+++|
T Consensus 27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~---------------------~pi~sl~WS-----~dgr~L 80 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHV---------------------RPITSLCWS-----RDGRKL 80 (405)
T ss_pred ceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccc---------------------cceeEEEec-----CCCCEe
Confidence 3445777899999999999999999999 8777887763 489999995 666779
Q ss_pred EeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEeec
Q 001070 228 VTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGY 307 (1165)
Q Consensus 228 vtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~ 307 (1165)
+| .|-|-.|+|||+-.+ .|++.++| +.-+..+.++|+..=.+++..-+-+=|.+.++.
T Consensus 81 lt-sS~D~si~lwDl~~g------------s~l~rirf---------~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~ 138 (405)
T KOG1273|consen 81 LT-SSRDWSIKLWDLLKG------------SPLKRIRF---------DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD 138 (405)
T ss_pred ee-ecCCceeEEEeccCC------------CceeEEEc---------cCccceeeeccccCCeEEEEEecCCcEEEEecC
Confidence 96 889999999998544 79999999 345556777787776666666666666666663
No 81
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=98.09 E-value=5.8e-06 Score=94.19 Aligned_cols=83 Identities=17% Similarity=0.445 Sum_probs=66.4
Q ss_pred CceEEEeecCCcEEEEeCcch---hhHhhcCCcc----------------------EEEeecCC---CceeEEecCCCCC
Q 001070 157 KHYVCYGLKGGNVRVLNLNTA---TRSLLRGHTK----------------------IKIWEDSK---VAPLIILKPHGGQ 208 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~t~---ir~llrGH~q----------------------VriWD~~~---g~pl~~lephdG~ 208 (1165)
...+|+++-||.||||||.+. -+-+.+.|.. ++|||.|. |.||..|+=|. .
T Consensus 270 ~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk-~ 348 (440)
T KOG0302|consen 270 DGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHK-A 348 (440)
T ss_pred CceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEecc-C
Confidence 567889999999999999984 2335566665 99999985 68999999985 4
Q ss_pred CcceeEeecCCCCCCceEEEeecCCCceEEEeEccCc
Q 001070 209 PVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASE 245 (1165)
Q Consensus 209 sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~ 245 (1165)
+|+||.| +|+--. .|.+++.|..|-|||++.+
T Consensus 349 pItsieW--~p~e~s---~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 349 PITSIEW--HPHEDS---VIAASGEDNQITIWDLSVE 380 (440)
T ss_pred CeeEEEe--ccccCc---eEEeccCCCcEEEEEeecc
Confidence 9999999 566533 3445668999999999876
No 82
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.08 E-value=1.9e-05 Score=89.88 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=95.4
Q ss_pred ccCCCcccccccEeeecCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc-------------------------------
Q 001070 140 KYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK------------------------------- 187 (1165)
Q Consensus 140 ~Y~sd~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q------------------------------- 187 (1165)
.||---.--.|+ +--|||.||+|-.||.|||||.+| ..-+.+.+-++
T Consensus 186 ~~Gh~~~ct~G~-f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s 264 (399)
T KOG0296|consen 186 MSGHNSPCTCGE-FIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGS 264 (399)
T ss_pred ecCCCCCccccc-ccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEcccc
Confidence 344333334466 445799999999999999999998 54445554444
Q ss_pred ---------------------------------------------EEEeecCCCceeEEecCCCCCCcceeEeecCCCCC
Q 001070 188 ---------------------------------------------IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQA 222 (1165)
Q Consensus 188 ---------------------------------------------VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~ 222 (1165)
|-|||.++..+.++++ |. .+|.++.|+. .
T Consensus 265 gKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he-~~V~~l~w~~---t- 338 (399)
T KOG0296|consen 265 GKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HE-DGVTKLKWLN---T- 338 (399)
T ss_pred ceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CC-CceEEEEEcC---c-
Confidence 8899999888666554 42 3699999972 2
Q ss_pred CceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccC
Q 001070 223 GHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAK 296 (1165)
Q Consensus 223 d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~ 296 (1165)
.+|+| +..|..|++||.- ++.|+-|+.+ |..-++-.+++|++++||-+.-.
T Consensus 339 --~~l~t-~c~~g~v~~wDaR------------tG~l~~~y~G--------H~~~Il~f~ls~~~~~vvT~s~D 389 (399)
T KOG0296|consen 339 --DYLLT-ACANGKVRQWDAR------------TGQLKFTYTG--------HQMGILDFALSPQKRLVVTVSDD 389 (399)
T ss_pred --chhee-eccCceEEeeecc------------ccceEEEEec--------CchheeEEEEcCCCcEEEEecCC
Confidence 23675 8899999999974 4599999995 88888999999999998865443
No 83
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.07 E-value=5e-06 Score=100.84 Aligned_cols=95 Identities=22% Similarity=0.443 Sum_probs=74.8
Q ss_pred cCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc-----------------------EEEeecCC-CceeEEecCCCCCCc
Q 001070 156 NKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK-----------------------IKIWEDSK-VAPLIILKPHGGQPV 210 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q-----------------------VriWD~~~-g~pl~~lephdG~sV 210 (1165)
-..||.+|+.||.|++||+.. .-..+++|-+- ++.||+|. ..+...|..|.| +|
T Consensus 145 ep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G-pV 223 (839)
T KOG0269|consen 145 EPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG-PV 223 (839)
T ss_pred CccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccC-ce
Confidence 478999999999999999998 66668888655 89999985 467888999998 99
Q ss_pred ceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEe
Q 001070 211 NSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLD 264 (1165)
Q Consensus 211 ~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe 264 (1165)
+++-| .|++ -+|.| |.-|+.||||+..+.+- ..-.|++|.-
T Consensus 224 ~c~nw--hPnr---~~lAT-GGRDK~vkiWd~t~~~~-------~~~~tInTia 264 (839)
T KOG0269|consen 224 LCLNW--HPNR---EWLAT-GGRDKMVKIWDMTDSRA-------KPKHTINTIA 264 (839)
T ss_pred EEEee--cCCC---ceeee-cCCCccEEEEeccCCCc-------cceeEEeecc
Confidence 99999 6754 33565 55999999999876532 2346666653
No 84
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=1.7e-05 Score=97.25 Aligned_cols=130 Identities=16% Similarity=0.277 Sum_probs=101.7
Q ss_pred ccccCCCcccccccEeeecCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecC
Q 001070 138 ITKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDS 194 (1165)
Q Consensus 138 It~Y~sd~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~ 194 (1165)
+||++++-.-+-|=.+-.-+-+|.+++.+|.|+.||-.. .+-+-|.+|.+ ||||.-.
T Consensus 2 ltkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 2 LTKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred cchhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 477888776666655555678999999999999999988 77788999998 9999998
Q ss_pred CCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccc
Q 001070 195 KVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVE 274 (1165)
Q Consensus 195 ~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~ 274 (1165)
...++-+|.+|. +=|..+.| .+ ...| |.|+|-|.||+||+-.++ +|+-+|+| |
T Consensus 82 ~rrclftL~GHl-DYVRt~~F--Hh--eyPW--IlSASDDQTIrIWNwqsr------------~~iavltG--------H 134 (1202)
T KOG0292|consen 82 TRRCLFTLLGHL-DYVRTVFF--HH--EYPW--ILSASDDQTIRIWNWQSR------------KCIAVLTG--------H 134 (1202)
T ss_pred cceehhhhcccc-ceeEEeec--cC--CCce--EEEccCCCeEEEEeccCC------------ceEEEEec--------C
Confidence 888899999885 58999999 22 2333 448999999999996554 99999996 5
Q ss_pred cccEEEEEeecCCcEEEEec
Q 001070 275 EAFFNQVVVLSQAGLLLFAN 294 (1165)
Q Consensus 275 ~aff~sV~~~p~a~~ilLan 294 (1165)
.-|+--..++|.-.+||=|.
T Consensus 135 nHYVMcAqFhptEDlIVSaS 154 (1202)
T KOG0292|consen 135 NHYVMCAQFHPTEDLIVSAS 154 (1202)
T ss_pred ceEEEeeccCCccceEEEec
Confidence 55554445677666666554
No 85
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.04 E-value=0.00017 Score=80.31 Aligned_cols=141 Identities=14% Similarity=0.219 Sum_probs=94.5
Q ss_pred Eeee--cCceEEEeec-CCcEEEEeCcc--hh---hHhhcCCcc----------------------EEEeecCC-Ccee-
Q 001070 152 QIAV--NKHYVCYGLK-GGNVRVLNLNT--AT---RSLLRGHTK----------------------IKIWEDSK-VAPL- 199 (1165)
Q Consensus 152 ~IAV--n~~yIayG~k-dg~IRVwdi~t--~i---r~llrGH~q----------------------VriWD~~~-g~pl- 199 (1165)
.|++ ||+||+.+.. ++.|+|||+++ .+ ...+.|+.. |+|||..+ |...
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 4655 4888776554 89999999974 11 123344322 99999876 4321
Q ss_pred ---EEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccc
Q 001070 200 ---IILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEA 276 (1165)
Q Consensus 200 ---~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~a 276 (1165)
.......|..++.++|. | ++++|.++...+.+|.+|++.... ..+++++++...+.... +..
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~--p---dg~~lyv~~~~~~~v~v~~~~~~~--------~~~~~~~~~~~~p~~~~--~~~ 228 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFH--P---NQQYAYCVNELNSSVDVWQLKDPH--------GEIECVQTLDMMPADFS--DTR 228 (330)
T ss_pred cCCCceecCCCCCCceEEEC--C---CCCEEEEEecCCCEEEEEEEeCCC--------CCEEEEEEEecCCCcCC--CCc
Confidence 11222336678899993 4 446677777789999999986431 24577888864332211 123
Q ss_pred cEEEEEeecCCcEEEEeccCCCcEEEEEeec
Q 001070 277 FFNQVVVLSQAGLLLFANAKKNAIYSVHLGY 307 (1165)
Q Consensus 277 ff~sV~~~p~a~~ilLan~~r~aIYalhl~~ 307 (1165)
+-..+.++|+++|++++|...+.|.+++++.
T Consensus 229 ~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 229 WAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred cceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 4446889999999999999999999999864
No 86
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.04 E-value=2.8e-05 Score=93.79 Aligned_cols=144 Identities=16% Similarity=0.315 Sum_probs=103.7
Q ss_pred Eeee--cCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc-------------------------EEEeecCCCc-eeEEe
Q 001070 152 QIAV--NKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK-------------------------IKIWEDSKVA-PLIIL 202 (1165)
Q Consensus 152 ~IAV--n~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q-------------------------VriWD~~~g~-pl~~l 202 (1165)
-|+| ||+|||.|-+-|+|||+|+.. ..--....|+- |-|+|+.-.+ +++++
T Consensus 464 ~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtl 543 (1080)
T KOG1408|consen 464 ALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTL 543 (1080)
T ss_pred EEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhh
Confidence 3666 899999999999999999998 66667888887 9999987554 68888
Q ss_pred cCCCCCCcceeEeecC-----------------------------C---------------CCCCceEEEeecCCCceEE
Q 001070 203 KPHGGQPVNSAQYLTA-----------------------------P---------------NQAGHIILVTAGPLNREVK 238 (1165)
Q Consensus 203 ephdG~sV~SVaFl~a-----------------------------P---------------~~~d~~~lvtsGslnrtIK 238 (1165)
..|. -+|.||-|.-+ | =.|.|++.+| |.+||.|+
T Consensus 544 d~HS-ssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t-~cQDrnir 621 (1080)
T KOG1408|consen 544 DGHS-SSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVT-VCQDRNIR 621 (1080)
T ss_pred cccc-cceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEE-EecccceE
Confidence 7663 38999998210 1 1244775565 77999999
Q ss_pred EeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEeecCCCccccccc
Q 001070 239 LWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGYGNNSAATRID 317 (1165)
Q Consensus 239 LW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~g~~~~~~r~d 317 (1165)
|++..++ +-+.+|.+..+.+ .+++ +|.+||++-||.-+...|+.-+ ++|.++.-.++|-
T Consensus 622 if~i~sg------------Kq~k~FKgs~~~e----G~lI-Kv~lDPSgiY~atScsdktl~~---~Df~sgEcvA~m~ 680 (1080)
T KOG1408|consen 622 IFDIESG------------KQVKSFKGSRDHE----GDLI-KVILDPSGIYLATSCSDKTLCF---VDFVSGECVAQMT 680 (1080)
T ss_pred EEecccc------------ceeeeecccccCC----CceE-EEEECCCccEEEEeecCCceEE---EEeccchhhhhhc
Confidence 9998555 7777777633332 3555 9999999999999988876432 2344444344443
No 87
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.04 E-value=1.5e-05 Score=92.06 Aligned_cols=117 Identities=19% Similarity=0.297 Sum_probs=87.1
Q ss_pred eeecCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCCCceeEEecCCCCCC
Q 001070 153 IAVNKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSKVAPLIILKPHGGQP 209 (1165)
Q Consensus 153 IAVn~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~g~pl~~lephdG~s 209 (1165)
+-.||-.+.+|+.||.+||||..+ +--.-|-||+. |++||.|+...+.++.-.++..
T Consensus 355 fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~ 434 (506)
T KOG0289|consen 355 FHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKE 434 (506)
T ss_pred EcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecccccc
Confidence 444778888999999999999998 76778999999 9999999988777777777789
Q ss_pred cceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcE
Q 001070 210 VNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGL 289 (1165)
Q Consensus 210 V~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ 289 (1165)
|.+|.| ...+.||+.+ ...|+++-+... .+.|.|+.++..++ ..-+-|.+.-.+++
T Consensus 435 v~s~~f-----D~SGt~L~~~---g~~l~Vy~~~k~--------~k~W~~~~~~~~~s--------g~st~v~Fg~~aq~ 490 (506)
T KOG0289|consen 435 VNSLSF-----DQSGTYLGIA---GSDLQVYICKKK--------TKSWTEIKELADHS--------GLSTGVRFGEHAQY 490 (506)
T ss_pred ceeEEE-----cCCCCeEEee---cceeEEEEEecc--------cccceeeehhhhcc--------cccceeeecccceE
Confidence 999999 2445668875 456777776432 35799999998644 22333444455555
Q ss_pred EEEe
Q 001070 290 LLFA 293 (1165)
Q Consensus 290 ilLa 293 (1165)
+.-.
T Consensus 491 l~s~ 494 (506)
T KOG0289|consen 491 LAST 494 (506)
T ss_pred Eeec
Confidence 4443
No 88
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.03 E-value=3.6e-05 Score=93.43 Aligned_cols=213 Identities=21% Similarity=0.315 Sum_probs=139.6
Q ss_pred cCCceEEecccCCCCCCCCCCcccccccccCCCcccccccEeeecCceEEEeec-CCcEEEEeCcc--hhhHhhcCCcc-
Q 001070 112 FGDYVAYDVDAVEEGREPTQQLEVNPITKYGSDPELLIGRQIAVNKHYVCYGLK-GGNVRVLNLNT--ATRSLLRGHTK- 187 (1165)
Q Consensus 112 ~g~~~~~dVd~~~~ge~~~pqlev~pIt~Y~sd~~~~~GR~IAVn~~yIayG~k-dg~IRVwdi~t--~ir~llrGH~q- 187 (1165)
.-.-..|.++... ...|.-..+..|+.-|- -..-|.+.|...-|+.++. ++-|.|||++| -+|.+=.|---
T Consensus 343 nNtv~~ysl~~s~--~~~p~~~~~~~i~~~GH---R~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~ 417 (888)
T KOG0306|consen 343 NNTVEWYSLENSG--KTSPEADRTSNIEIGGH---RSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILA 417 (888)
T ss_pred cCceEEEEeccCC--CCCccccccceeeeccc---hhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEE
Confidence 3355668888822 22212455556665442 2245778875444444333 67899999997 45443322111
Q ss_pred ------------------EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCC
Q 001070 188 ------------------IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWS 249 (1165)
Q Consensus 188 ------------------VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~ 249 (1165)
+.|+|..++..+++.+.||| .+.|++- .||+.+ .|| |+.|+|||+|+....-.
T Consensus 418 ~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdg-aIWsi~~--~pD~~g---~vT-~saDktVkfWdf~l~~~-- 488 (888)
T KOG0306|consen 418 SKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDG-AIWSISL--SPDNKG---FVT-GSADKTVKFWDFKLVVS-- 488 (888)
T ss_pred EEecCCCceEEEeccCCceEEEEeehhhhhhhhhcccc-ceeeeee--cCCCCc---eEE-ecCCcEEEEEeEEEEec--
Confidence 78999999999999999998 8888888 577777 776 88999999999855422
Q ss_pred CCCCCC---CcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEeecCCCcccccccccccccccc
Q 001070 250 LPTHAE---SWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGYGNNSAATRIDYIAEFTVTM 326 (1165)
Q Consensus 250 ~~~~~~---~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~g~~~~~~r~dyiaeF~v~~ 326 (1165)
.|+... +-+=+.||++ ++=++.|.++||+.||.++=.. |. +|+.| ..+--=|++=|.=.-
T Consensus 489 ~~gt~~k~lsl~~~rtLel---------~ddvL~v~~Spdgk~LaVsLLd-nT---VkVyf----lDtlKFflsLYGHkL 551 (888)
T KOG0306|consen 489 VPGTQKKVLSLKHTRTLEL---------EDDVLCVSVSPDGKLLAVSLLD-NT---VKVYF----LDTLKFFLSLYGHKL 551 (888)
T ss_pred cCcccceeeeeccceEEec---------cccEEEEEEcCCCcEEEEEecc-Ce---EEEEE----ecceeeeeeeccccc
Confidence 222221 2344567887 3445688999999999887543 22 23332 111223677788889
Q ss_pred ceeeeeeccCC----CCcc--eEEEEEeehhhhhhhccccccccC
Q 001070 327 PVLSFTGTIDP----PSEH--IIKLYCVQTQAIQQYSLNLFQCLP 365 (1165)
Q Consensus 327 PILSft~~~d~----~ge~--~vq~yCvQtqAIQqy~l~~~~c~p 365 (1165)
|++|+.+..|+ -|.. .|+| .+|+|-.|--
T Consensus 552 PV~smDIS~DSklivTgSADKnVKi----------WGLdFGDCHK 586 (888)
T KOG0306|consen 552 PVLSMDISPDSKLIVTGSADKNVKI----------WGLDFGDCHK 586 (888)
T ss_pred ceeEEeccCCcCeEEeccCCCceEE----------eccccchhhh
Confidence 99999999988 2332 4776 5899999954
No 89
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=98.03 E-value=7e-05 Score=85.66 Aligned_cols=150 Identities=20% Similarity=0.297 Sum_probs=107.8
Q ss_pred CCcccccccccCCCcccccccEeeecCceEEEeecCCcEEEEeCcchhhH-----------------hhcCCcc------
Q 001070 131 QQLEVNPITKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNTATRS-----------------LLRGHTK------ 187 (1165)
Q Consensus 131 pqlev~pIt~Y~sd~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t~ir~-----------------llrGH~q------ 187 (1165)
|++++..|..|+---....-|+= |..|.|+=++.|++.|||+...++. .+.||.+
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~--~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~Ld 218 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLG--NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLD 218 (440)
T ss_pred ccccccccccccccceeeecccC--CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeee
Confidence 79999999999865433222211 5677788899999999999854333 3567766
Q ss_pred ---------------------------------------------------------------EEEeecCCC---ceeEE
Q 001070 188 ---------------------------------------------------------------IKIWEDSKV---APLII 201 (1165)
Q Consensus 188 ---------------------------------------------------------------VriWD~~~g---~pl~~ 201 (1165)
|||||+|.+ .++-+
T Consensus 219 WSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~ 298 (440)
T KOG0302|consen 219 WSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST 298 (440)
T ss_pred cccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe
Confidence 999999988 44555
Q ss_pred ecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEE
Q 001070 202 LKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQV 281 (1165)
Q Consensus 202 lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV 281 (1165)
+-|+| -|+-+.|- +... ||++|.-|.+++||||-.- ....-+-+|.+ |++-+-+|
T Consensus 299 -kAh~s-DVNVISWn----r~~~--lLasG~DdGt~~iwDLR~~---------~~~~pVA~fk~--------Hk~pItsi 353 (440)
T KOG0302|consen 299 -KAHNS-DVNVISWN----RREP--LLASGGDDGTLSIWDLRQF---------KSGQPVATFKY--------HKAPITSI 353 (440)
T ss_pred -eccCC-ceeeEEcc----CCcc--eeeecCCCceEEEEEhhhc---------cCCCcceeEEe--------ccCCeeEE
Confidence 78876 89999992 2222 6778999999999999432 23366778886 78888899
Q ss_pred EeecCCcEEEEeccCCCcEE--EEEeec
Q 001070 282 VVLSQAGLLLFANAKKNAIY--SVHLGY 307 (1165)
Q Consensus 282 ~~~p~a~~ilLan~~r~aIY--alhl~~ 307 (1165)
.-+|.-.=++++--.-|.|- -|-++.
T Consensus 354 eW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 354 EWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred EeccccCceEEeccCCCcEEEEEeeccC
Confidence 99988776666666666554 444444
No 90
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.02 E-value=8.9e-06 Score=94.79 Aligned_cols=100 Identities=17% Similarity=0.350 Sum_probs=77.5
Q ss_pred CceEEEeecCCcEEEEeCcc--hhhHhhcCCcc----------------------EEEeecCCCceeEEecCCCCCCcce
Q 001070 157 KHYVCYGLKGGNVRVLNLNT--ATRSLLRGHTK----------------------IKIWEDSKVAPLIILKPHGGQPVNS 212 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~t--~ir~llrGH~q----------------------VriWD~~~g~pl~~lephdG~sV~S 212 (1165)
++.|.+|.-|+.|.|||.-. .+-.+|.||.. ||+||+++|.++.+|+ .|+.+|+
T Consensus 227 ~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~--~~~~~~c 304 (503)
T KOG0282|consen 227 GHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH--LDKVPTC 304 (503)
T ss_pred eeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe--cCCCcee
Confidence 57778888899999999987 55569999999 9999999999999996 5899999
Q ss_pred eEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEec
Q 001070 213 AQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDL 265 (1165)
Q Consensus 213 VaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~ 265 (1165)
|-| .|++ .+.|| .|-.|+.|+.||.-+++ ++..-...-.|+-+++|
T Consensus 305 vkf--~pd~-~n~fl--~G~sd~ki~~wDiRs~k--vvqeYd~hLg~i~~i~F 350 (503)
T KOG0282|consen 305 VKF--HPDN-QNIFL--VGGSDKKIRQWDIRSGK--VVQEYDRHLGAILDITF 350 (503)
T ss_pred eec--CCCC-CcEEE--EecCCCcEEEEeccchH--HHHHHHhhhhheeeeEE
Confidence 999 7777 33433 47799999999986653 11111123456677776
No 91
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.02 E-value=7.9e-06 Score=98.99 Aligned_cols=9 Identities=11% Similarity=0.183 Sum_probs=5.3
Q ss_pred CceEEeccc
Q 001070 114 DYVAYDVDA 122 (1165)
Q Consensus 114 ~~~~~dVd~ 122 (1165)
+.-+|+||+
T Consensus 616 pKK~~k~e~ 624 (1102)
T KOG1924|consen 616 PKKVYKPEV 624 (1102)
T ss_pred ccccCCCCC
Confidence 455666665
No 92
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.95 E-value=2e-05 Score=95.60 Aligned_cols=117 Identities=23% Similarity=0.302 Sum_probs=94.7
Q ss_pred eeecCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCCCceeEEecCCCCCC
Q 001070 153 IAVNKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSKVAPLIILKPHGGQP 209 (1165)
Q Consensus 153 IAVn~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~g~pl~~lephdG~s 209 (1165)
++.||+|||-|+=|.++.|+-.+| ..-.-|-||.- ||||-..=|-|-..|-.|| ++
T Consensus 516 ~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHd-DS 594 (888)
T KOG0306|consen 516 VSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHD-DS 594 (888)
T ss_pred EcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhccc-Cc
Confidence 455899999999999999999999 99999999987 9999888787777777886 69
Q ss_pred cceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcE
Q 001070 210 VNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGL 289 (1165)
Q Consensus 210 V~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ 289 (1165)
|.+|.|+ | .-.+..| .+-|+.||-||- +.+.|+|+|.++.+. .. -.++.|.|+|
T Consensus 595 vm~V~F~--P---~~~~FFt-~gKD~kvKqWDg------------~kFe~iq~L~~H~~e------v~--cLav~~~G~~ 648 (888)
T KOG0306|consen 595 VMSVQFL--P---KTHLFFT-CGKDGKVKQWDG------------EKFEEIQKLDGHHSE------VW--CLAVSPNGSF 648 (888)
T ss_pred eeEEEEc--c---cceeEEE-ecCcceEEeech------------hhhhhheeeccchhe------ee--eeEEcCCCCe
Confidence 9999998 3 3343554 568999999994 678999999985433 34 4566899999
Q ss_pred EEEeccC
Q 001070 290 LLFANAK 296 (1165)
Q Consensus 290 ilLan~~ 296 (1165)
+|=+.-.
T Consensus 649 vvs~shD 655 (888)
T KOG0306|consen 649 VVSSSHD 655 (888)
T ss_pred EEeccCC
Confidence 8876543
No 93
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.94 E-value=1.9e-05 Score=92.12 Aligned_cols=151 Identities=17% Similarity=0.208 Sum_probs=95.9
Q ss_pred CCCCCCCcccccccccCCCcccccccEeeecCceEEEee-------cCCcEEEEeCcc----hhhH-hhcCCcc------
Q 001070 126 GREPTQQLEVNPITKYGSDPELLIGRQIAVNKHYVCYGL-------KGGNVRVLNLNT----ATRS-LLRGHTK------ 187 (1165)
Q Consensus 126 ge~~~pqlev~pIt~Y~sd~~~~~GR~IAVn~~yIayG~-------kdg~IRVwdi~t----~ir~-llrGH~q------ 187 (1165)
+|.. ++--..+-+.|+.+-..+.||.-....+..---+ --++|+.|.=++ .+|. -++||=-
T Consensus 158 ~e~~-~~~~ee~s~~h~k~~~dyq~r~~l~~P~dv~vnlR~~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD 236 (503)
T KOG0282|consen 158 KEDS-EHMAEESSTLHGKSLFDYQGRSYLQKPKDVGVNLREERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMD 236 (503)
T ss_pred cccc-cccccccccccccchhhccccccccCCcccCCccccceeeccHhheeeccCCccccchhhhccceeeEEEecCCC
Confidence 3443 3444566788888888888887333222211111 123444444333 1111 1112211
Q ss_pred --EEEeecCC-CceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEe
Q 001070 188 --IKIWEDSK-VAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLD 264 (1165)
Q Consensus 188 --VriWD~~~-g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe 264 (1165)
|+||++.. +.+|++|.+|. ++|-+++|. .+| ..++ |++.|+.|||||.++ ++|+++|+
T Consensus 237 ~~vklW~vy~~~~~lrtf~gH~-k~Vrd~~~s--~~g---~~fL-S~sfD~~lKlwDtET------------G~~~~~f~ 297 (503)
T KOG0282|consen 237 GLVKLWNVYDDRRCLRTFKGHR-KPVRDASFN--NCG---TSFL-SASFDRFLKLWDTET------------GQVLSRFH 297 (503)
T ss_pred ceEEEEEEecCcceehhhhcch-hhhhhhhcc--ccC---Ceee-eeecceeeeeecccc------------ceEEEEEe
Confidence 99999987 78899999884 799999993 443 4466 588999999999854 49999999
Q ss_pred ccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEe
Q 001070 265 LKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHL 305 (1165)
Q Consensus 265 ~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl 305 (1165)
. +....-|-.+|+..-+||+-....-|-..-+
T Consensus 298 ~---------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi 329 (503)
T KOG0282|consen 298 L---------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDI 329 (503)
T ss_pred c---------CCCceeeecCCCCCcEEEEecCCCcEEEEec
Confidence 5 3444456788999777777666666544433
No 94
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=97.94 E-value=3e-05 Score=92.77 Aligned_cols=129 Identities=19% Similarity=0.287 Sum_probs=85.2
Q ss_pred eEEEeecCCcEEEEeCcc-hhhH--hhcCCcc-----------------------EEEeecCC-C---------------
Q 001070 159 YVCYGLKGGNVRVLNLNT-ATRS--LLRGHTK-----------------------IKIWEDSK-V--------------- 196 (1165)
Q Consensus 159 yIayG~kdg~IRVwdi~t-~ir~--llrGH~q-----------------------VriWD~~~-g--------------- 196 (1165)
-|++.+-|-+||+||.++ .++. ++.||+. |.|||.+- +
T Consensus 114 ~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~ 193 (720)
T KOG0321|consen 114 LLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRH 193 (720)
T ss_pred eEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccc
Confidence 456788899999999998 6655 5999998 99999762 2
Q ss_pred ----ce-------eEEecCCCCC---CcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEE
Q 001070 197 ----AP-------LIILKPHGGQ---PVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQT 262 (1165)
Q Consensus 197 ----~p-------l~~lephdG~---sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QT 262 (1165)
.| .++|.-|.+. +|..|+| .|-..|+++|-.|..||+||+-.. .|.-.
T Consensus 194 n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f------kDe~tlaSaga~D~~iKVWDLRk~------------~~~~r 255 (720)
T KOG0321|consen 194 NTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF------KDESTLASAGAADSTIKVWDLRKN------------YTAYR 255 (720)
T ss_pred cCCCCCCchhhccccccccccCceeeeeEEEEE------eccceeeeccCCCcceEEEeeccc------------ccccc
Confidence 01 4555555432 6888999 565668988889999999999433 22222
Q ss_pred EeccC-CCCCccccccEEEE--EeecCCcEEEEeccCCCcEEEEEee
Q 001070 263 LDLKS-SAKPRVEEAFFNQV--VVLSQAGLLLFANAKKNAIYSVHLG 306 (1165)
Q Consensus 263 Le~~~-s~~~~~~~aff~sV--~~~p~a~~ilLan~~r~aIYalhl~ 306 (1165)
.+=.. ..-+..++.++-+| ++|..|.+++.+.. -+.||..-+.
T Consensus 256 ~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~ 301 (720)
T KOG0321|consen 256 QEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMR 301 (720)
T ss_pred cCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEecc
Confidence 21100 11111123454445 56666788777766 8999987664
No 95
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=97.94 E-value=3.2e-05 Score=86.21 Aligned_cols=90 Identities=18% Similarity=0.380 Sum_probs=73.7
Q ss_pred CceEEEeecCCcEEEEeCcc-hhhHhhcCCcc-----------------------EEEeecCCC-ceeEEecCCCCC---
Q 001070 157 KHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK-----------------------IKIWEDSKV-APLIILKPHGGQ--- 208 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q-----------------------VriWD~~~g-~pl~~lephdG~--- 208 (1165)
--.||.|-+|-+||+-||++ ..-++|.||.+ ||+||++.. .++.++.-|+|.
T Consensus 158 HcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p 237 (397)
T KOG4283|consen 158 HCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPP 237 (397)
T ss_pred ceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCc
Confidence 35689999999999999999 88899999999 999999975 457888777652
Q ss_pred ----------CcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCC
Q 001070 209 ----------PVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPT 252 (1165)
Q Consensus 209 ----------sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~ 252 (1165)
.|+++||. .|+++|.+.| .|..|++|....+++-+.+.
T Consensus 238 ~~~~n~ah~gkvngla~t-----Sd~~~l~~~g-td~r~r~wn~~~G~ntl~~~ 285 (397)
T KOG4283|consen 238 ILKTNTAHYGKVNGLAWT-----SDARYLASCG-TDDRIRVWNMESGRNTLREF 285 (397)
T ss_pred cccccccccceeeeeeec-----ccchhhhhcc-CccceEEeecccCccccccc
Confidence 67888884 5556677645 78889999999998866553
No 96
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.93 E-value=2.1e-05 Score=86.11 Aligned_cols=94 Identities=21% Similarity=0.460 Sum_probs=64.0
Q ss_pred cCceEEEeecCCcEEEEeCcc--hhhHhhcCCcc-------------------EEEeecCCCc-----------------
Q 001070 156 NKHYVCYGLKGGNVRVLNLNT--ATRSLLRGHTK-------------------IKIWEDSKVA----------------- 197 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t--~ir~llrGH~q-------------------VriWD~~~g~----------------- 197 (1165)
.++-|.+.+.||.||+||+.| .+.+|.-.|.- |+|||..+-.
T Consensus 154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~ 233 (334)
T KOG0278|consen 154 EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLH 233 (334)
T ss_pred cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCcccccccccc
Confidence 356666679999999999998 55556555543 8888865421
Q ss_pred ------------------------eeEEe-cCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCC
Q 001070 198 ------------------------PLIIL-KPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPT 252 (1165)
Q Consensus 198 ------------------------pl~~l-ephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~ 252 (1165)
-+..+ ++|-| +|-+|-| +|+| - +-++||.|.||+||....+ .
T Consensus 234 P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~g-pVhcVrF--SPdG---E-~yAsGSEDGTirlWQt~~~------~ 300 (334)
T KOG0278|consen 234 PKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFG-PVHCVRF--SPDG---E-LYASGSEDGTIRLWQTTPG------K 300 (334)
T ss_pred CCCceEEecCcceEEEEEeccCCceeeecccCCCC-ceEEEEE--CCCC---c-eeeccCCCceEEEEEecCC------C
Confidence 12222 23322 9999999 5665 3 5779999999999997433 1
Q ss_pred CCCCcceEEE
Q 001070 253 HAESWKCTQT 262 (1165)
Q Consensus 253 ~~~~w~C~QT 262 (1165)
..+.|+|+.-
T Consensus 301 ~~~~~~~~~~ 310 (334)
T KOG0278|consen 301 TYGLWKCVKP 310 (334)
T ss_pred chhhccccCh
Confidence 2247999654
No 97
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=97.91 E-value=1.3e-05 Score=97.73 Aligned_cols=84 Identities=25% Similarity=0.540 Sum_probs=72.4
Q ss_pred cccEeee-------cCceEEEeecCCcEEEEeCcchhh-HhhcCCcc----------------------EEEeecCCCce
Q 001070 149 IGRQIAV-------NKHYVCYGLKGGNVRVLNLNTATR-SLLRGHTK----------------------IKIWEDSKVAP 198 (1165)
Q Consensus 149 ~GR~IAV-------n~~yIayG~kdg~IRVwdi~t~ir-~llrGH~q----------------------VriWD~~~g~p 198 (1165)
+|..=|| .|.||.+|..|..++||...|+.+ +-+|||+. ||||-...|.|
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~p 266 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAP 266 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCch
Confidence 4655455 399999999999999999999555 49999999 99999999999
Q ss_pred eEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEcc
Q 001070 199 LIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASA 243 (1165)
Q Consensus 199 l~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a 243 (1165)
|.++.+|.| +|.+++|. |-. +.+-|.|+.+||..
T Consensus 267 vsvLrghtg-avtaiafs--P~~--------sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 267 VSVLRGHTG-AVTAIAFS--PRA--------SSSDDGTCRIWDAR 300 (1113)
T ss_pred HHHHhcccc-ceeeeccC--ccc--------cCCCCCceEecccc
Confidence 999999998 99999994 333 56688999999986
No 98
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=1.3e-05 Score=88.01 Aligned_cols=53 Identities=23% Similarity=0.621 Sum_probs=44.7
Q ss_pred EEEeecCC-CceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcC
Q 001070 188 IKIWEDSK-VAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEE 246 (1165)
Q Consensus 188 VriWD~~~-g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~ 246 (1165)
||+||+++ ..||-.+.+| |-.|.+|.| +|+..+ |++|++-|=|.+||+...+.
T Consensus 215 vr~wDir~~r~pl~eL~gh-~~AVRkvk~--Sph~~~---lLaSasYDmT~riw~~~~~d 268 (311)
T KOG0277|consen 215 VRGWDIRNLRTPLFELNGH-GLAVRKVKF--SPHHAS---LLASASYDMTVRIWDPERQD 268 (311)
T ss_pred EEEEehhhccccceeecCC-ceEEEEEec--Ccchhh---HhhhccccceEEecccccch
Confidence 99999987 4788888777 679999999 566655 89999999999999986543
No 99
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=97.87 E-value=0.00012 Score=81.81 Aligned_cols=126 Identities=21% Similarity=0.287 Sum_probs=101.2
Q ss_pred CceEEEeecCCcEEEEeCcc-h-hhH--hhcCCcc-----------------------------------EEEeecCCCc
Q 001070 157 KHYVCYGLKGGNVRVLNLNT-A-TRS--LLRGHTK-----------------------------------IKIWEDSKVA 197 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~t-~-ir~--llrGH~q-----------------------------------VriWD~~~g~ 197 (1165)
|+|+.+|..||-|-|||.++ . .+. |+-.|.. +||||+.+.+
T Consensus 56 grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ 135 (397)
T KOG4283|consen 56 GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ 135 (397)
T ss_pred ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce
Confidence 89999999999999999986 2 122 4444433 9999999987
Q ss_pred eeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCcccccc
Q 001070 198 PLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAF 277 (1165)
Q Consensus 198 pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~af 277 (1165)
-+..|+=. .-|||-|+ +|=...|- ||+.|--+-.|+|-|++++ .|.-||.+ |.+=
T Consensus 136 ~a~~F~me--~~VYsham--Sp~a~sHc-LiA~gtr~~~VrLCDi~SG------------s~sH~LsG--------Hr~~ 190 (397)
T KOG4283|consen 136 EAVDFKME--GKVYSHAM--SPMAMSHC-LIAAGTRDVQVRLCDIASG------------SFSHTLSG--------HRDG 190 (397)
T ss_pred eeEEeecC--ceeehhhc--Chhhhcce-EEEEecCCCcEEEEeccCC------------cceeeecc--------ccCc
Confidence 77777654 37999999 56666655 8999999999999999766 89999994 8898
Q ss_pred EEEEEeecCCcEEEEeccCCCcEEEEEeec
Q 001070 278 FNQVVVLSQAGLLLFANAKKNAIYSVHLGY 307 (1165)
Q Consensus 278 f~sV~~~p~a~~ilLan~~r~aIYalhl~~ 307 (1165)
++.|.-.|...|||.+...--+|-.--+..
T Consensus 191 vlaV~Wsp~~e~vLatgsaDg~irlWDiRr 220 (397)
T KOG4283|consen 191 VLAVEWSPSSEWVLATGSADGAIRLWDIRR 220 (397)
T ss_pred eEEEEeccCceeEEEecCCCceEEEEEeec
Confidence 999999999999998877666666555554
No 100
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.86 E-value=1.3e-05 Score=96.91 Aligned_cols=80 Identities=20% Similarity=0.452 Sum_probs=70.7
Q ss_pred CceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCCCceeEEecCCCCCCccee
Q 001070 157 KHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSKVAPLIILKPHGGQPVNSA 213 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~g~pl~~lephdG~sV~SV 213 (1165)
|.|-|.|+-|+.+.||||.. ..-+.++||.+ |||||.+-|..+..|+.|.| .|.++
T Consensus 124 ~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~-~v~sl 202 (825)
T KOG0267|consen 124 GEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEG-KVQSL 202 (825)
T ss_pred eEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccc-ccccc
Confidence 67778899999999999996 77789999998 99999999988999999987 77777
Q ss_pred EeecCCCCCCceEEEeecCCCceEEEeEcc
Q 001070 214 QYLTAPNQAGHIILVTAGPLNREVKLWASA 243 (1165)
Q Consensus 214 aFl~aP~~~d~~~lvtsGslnrtIKLW~~a 243 (1165)
-| ..+.||+++|+.|+++++||+.
T Consensus 203 e~------hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 203 EF------HPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred cc------CchhhhhccCCCCceeeeeccc
Confidence 78 4557899999999999999984
No 101
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=97.85 E-value=0.0001 Score=89.15 Aligned_cols=122 Identities=16% Similarity=0.287 Sum_probs=85.7
Q ss_pred eeecCceEEEeecCCcEEEEeCcchhhHhhcCCcc---------------------EEEeecCCCceeEEecCCCCCCcc
Q 001070 153 IAVNKHYVCYGLKGGNVRVLNLNTATRSLLRGHTK---------------------IKIWEDSKVAPLIILKPHGGQPVN 211 (1165)
Q Consensus 153 IAVn~~yIayG~kdg~IRVwdi~t~ir~llrGH~q---------------------VriWD~~~g~pl~~lephdG~sV~ 211 (1165)
++....-+.||+-|++||+|.=.+.+ .+|.||+. ||.||. +|..|.+..+|. .-||
T Consensus 147 ~~l~e~~~vTgsaDKtIklWk~~~~l-~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ght-n~vY 223 (745)
T KOG0301|consen 147 ASLPENTYVTGSADKTIKLWKGGTLL-KTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHT-NFVY 223 (745)
T ss_pred eecCCCcEEeccCcceeeeccCCchh-hhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccc-eEEE
Confidence 33345566799999999999985544 57889999 999999 566688888774 4899
Q ss_pred eeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEE
Q 001070 212 SAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLL 291 (1165)
Q Consensus 212 SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~il 291 (1165)
|+.. ++++. +|++..-||||+||+- ..|.|.++++. -=+-++.+.+-+.+++
T Consensus 224 sis~--~~~~~----~Ivs~gEDrtlriW~~--------------~e~~q~I~lPt--------tsiWsa~~L~NgDIvv 275 (745)
T KOG0301|consen 224 SISM--ALSDG----LIVSTGEDRTLRIWKK--------------DECVQVITLPT--------TSIWSAKVLLNGDIVV 275 (745)
T ss_pred EEEe--cCCCC----eEEEecCCceEEEeec--------------CceEEEEecCc--------cceEEEEEeeCCCEEE
Confidence 9994 23322 3556779999999994 28999999742 1233666666666555
Q ss_pred EeccCCCcEEEEEeec
Q 001070 292 FANAKKNAIYSVHLGY 307 (1165)
Q Consensus 292 Lan~~r~aIYalhl~~ 307 (1165)
-+ .-..||++-.++
T Consensus 276 g~--SDG~VrVfT~~k 289 (745)
T KOG0301|consen 276 GG--SDGRVRVFTVDK 289 (745)
T ss_pred ec--cCceEEEEEecc
Confidence 43 234566665554
No 102
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.85 E-value=6.4e-05 Score=88.43 Aligned_cols=170 Identities=14% Similarity=0.265 Sum_probs=105.1
Q ss_pred eEEEeecCCcEEEEeCcc--hhhHhhcCCcc---------------------------EEEeecCCCc--e-eEEecCCC
Q 001070 159 YVCYGLKGGNVRVLNLNT--ATRSLLRGHTK---------------------------IKIWEDSKVA--P-LIILKPHG 206 (1165)
Q Consensus 159 yIayG~kdg~IRVwdi~t--~ir~llrGH~q---------------------------VriWD~~~g~--p-l~~lephd 206 (1165)
-..|.+.||..||||.+. .++..|+--.. |.|||..+.. | ..+-..|+
T Consensus 283 ~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~ 362 (641)
T KOG0772|consen 283 EFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHL 362 (641)
T ss_pred ceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccC
Confidence 345778899999999997 44444443222 9999976532 3 55666775
Q ss_pred -CCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeec
Q 001070 207 -GQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLS 285 (1165)
Q Consensus 207 -G~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p 285 (1165)
|..+.||+|. .|+++|+ |-+.|.+||||||..- -+|+-+.++=....+.+ -++++|
T Consensus 363 ~g~~Itsi~FS-----~dg~~Ll-SRg~D~tLKvWDLrq~-----------kkpL~~~tgL~t~~~~t------dc~FSP 419 (641)
T KOG0772|consen 363 PGQDITSISFS-----YDGNYLL-SRGFDDTLKVWDLRQF-----------KKPLNVRTGLPTPFPGT------DCCFSP 419 (641)
T ss_pred CCCceeEEEec-----cccchhh-hccCCCceeeeecccc-----------ccchhhhcCCCccCCCC------ccccCC
Confidence 5799999994 5556677 5779999999999443 26776666533222111 245689
Q ss_pred CCcEEEEeccCC-----CcEEEEEeecCCCccccccccccccccccceeeeee-ccCC--------CCcceEEEEEeehh
Q 001070 286 QAGLLLFANAKK-----NAIYSVHLGYGNNSAATRIDYIAEFTVTMPVLSFTG-TIDP--------PSEHIIKLYCVQTQ 351 (1165)
Q Consensus 286 ~a~~ilLan~~r-----~aIYalhl~~g~~~~~~r~dyiaeF~v~~PILSft~-~~d~--------~ge~~vq~yCvQtq 351 (1165)
+..+||-.-.-- ..+|++. ||.|=.-+++-.+=-|+-. .|.+ -|.|.+++|--+++
T Consensus 420 d~kli~TGtS~~~~~~~g~L~f~d----------~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~~ 489 (641)
T KOG0772|consen 420 DDKLILTGTSAPNGMTAGTLFFFD----------RMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPNE 489 (641)
T ss_pred CceEEEecccccCCCCCceEEEEe----------ccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECccc
Confidence 988888654321 1244432 2222233333333333322 2333 47789999999999
Q ss_pred hhhhhccccccccC
Q 001070 352 AIQQYSLNLFQCLP 365 (1165)
Q Consensus 352 AIQqy~l~~~~c~p 365 (1165)
+|-- .+.|.-
T Consensus 490 S~RG----ak~cv~ 499 (641)
T KOG0772|consen 490 SIRG----AKLCVV 499 (641)
T ss_pred cccc----hhheee
Confidence 8753 345654
No 103
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=97.84 E-value=0.00012 Score=87.61 Aligned_cols=159 Identities=13% Similarity=0.242 Sum_probs=107.8
Q ss_pred ccccccccCCCcccccccEeeecCceEEEeecCCcEEEEeCcc--------hhhHhhcCCcc------------------
Q 001070 134 EVNPITKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNT--------ATRSLLRGHTK------------------ 187 (1165)
Q Consensus 134 ev~pIt~Y~sd~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t--------~ir~llrGH~q------------------ 187 (1165)
.=+-||.+-||| .|...||-|..||+||+|-+.+ .--..|++|..
T Consensus 626 Ngt~vtDl~WdP---------FD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~a 696 (1012)
T KOG1445|consen 626 NGTLVTDLHWDP---------FDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVA 696 (1012)
T ss_pred cCceeeecccCC---------CChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhh
Confidence 345677777777 3556677788999999999875 22347888887
Q ss_pred -----EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCC----CC---
Q 001070 188 -----IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTH----AE--- 255 (1165)
Q Consensus 188 -----VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~----~~--- 255 (1165)
|++||.+++..-.+|.+|.| -++++||. |+| + ++++-.-|.+|++++-..++--++-.. +.
T Consensus 697 syd~Ti~lWDl~~~~~~~~l~gHtd-qIf~~AWS--pdG---r-~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgAR 769 (1012)
T KOG1445|consen 697 SYDSTIELWDLANAKLYSRLVGHTD-QIFGIAWS--PDG---R-RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGAR 769 (1012)
T ss_pred hccceeeeeehhhhhhhheeccCcC-ceeEEEEC--CCC---c-ceeeeecCceEEEeCCCCCCCccccCCCCccCccee
Confidence 99999999988889999964 79999994 554 5 455677999999999877653333221 11
Q ss_pred -CcceEEEEec----cCCCCC---------ccccccEEEE---E-------eecCCcEEEEeccCCCcEEEEEeecC
Q 001070 256 -SWKCTQTLDL----KSSAKP---------RVEEAFFNQV---V-------VLSQAGLLLFANAKKNAIYSVHLGYG 308 (1165)
Q Consensus 256 -~w~C~QTLe~----~~s~~~---------~~~~aff~sV---~-------~~p~a~~ilLan~~r~aIYalhl~~g 308 (1165)
.|.|-..+-. ..+.|. -.-.-++-++ + +|+|++.|||+.---.-||+.++-|.
T Consensus 770 i~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 770 ILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred EEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCC
Confidence 3777555443 222110 0001122222 1 67888888888888888888888773
No 104
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=97.83 E-value=5e-05 Score=83.05 Aligned_cols=139 Identities=17% Similarity=0.266 Sum_probs=88.8
Q ss_pred Cceee--cCCceEEecccCCCCCCC--CCCcccccccccCCCcccccccEeeec--CceEEEeecCCcEEEEeCcc-hhh
Q 001070 107 YGKRV--FGDYVAYDVDAVEEGREP--TQQLEVNPITKYGSDPELLIGRQIAVN--KHYVCYGLKGGNVRVLNLNT-ATR 179 (1165)
Q Consensus 107 ~Gr~l--~g~~~~~dVd~~~~ge~~--~pqlev~pIt~Y~sd~~~~~GR~IAVn--~~yIayG~kdg~IRVwdi~t-~ir 179 (1165)
.-++| -|+-.||--+-++--|.- -+-+|+.+=- -...-.-+..+-..+| ..-|.+..-|+.|--||..+ ++.
T Consensus 71 ~d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~-~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~ 149 (325)
T KOG0649|consen 71 HDDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPM-QVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQ 149 (325)
T ss_pred ehhheeeccCceEEEeeehhhhhhccchhhhhhcCcc-ccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEE
Confidence 44555 667888877776665521 0112222110 0001111222334444 33444555999999999999 999
Q ss_pred HhhcCCcc----------------------EEEeecCCCceeEEecCC---------CCCCcceeEeecCCCCCCceEEE
Q 001070 180 SLLRGHTK----------------------IKIWEDSKVAPLIILKPH---------GGQPVNSAQYLTAPNQAGHIILV 228 (1165)
Q Consensus 180 ~llrGH~q----------------------VriWD~~~g~pl~~leph---------dG~sV~SVaFl~aP~~~d~~~lv 228 (1165)
..||||++ |||||.+++..+..++|+ .|.++..++- ..|| ||
T Consensus 150 r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~-----~edW--lv 222 (325)
T KOG0649|consen 150 REYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV-----NEDW--LV 222 (325)
T ss_pred EEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec-----cCce--EE
Confidence 99999999 999999999887776655 4667777766 2343 46
Q ss_pred eecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccC
Q 001070 229 TAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKS 267 (1165)
Q Consensus 229 tsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~ 267 (1165)
.|| ...+-||.+-.. .|+++|.++.
T Consensus 223 CGg--Gp~lslwhLrss------------e~t~vfpipa 247 (325)
T KOG0649|consen 223 CGG--GPKLSLWHLRSS------------ESTCVFPIPA 247 (325)
T ss_pred ecC--CCceeEEeccCC------------CceEEEeccc
Confidence 444 567889998443 8999999854
No 105
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.83 E-value=0.00011 Score=85.40 Aligned_cols=81 Identities=23% Similarity=0.494 Sum_probs=65.3
Q ss_pred CceEEEeecCCcEEEEeCcc---hhhH-hh------------------cCCcc-----------------------EEEe
Q 001070 157 KHYVCYGLKGGNVRVLNLNT---ATRS-LL------------------RGHTK-----------------------IKIW 191 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~t---~ir~-ll------------------rGH~q-----------------------VriW 191 (1165)
|+|+|-|.-|-.|-|||..= ..-- +| .||+. |++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 78999999999999999862 1111 11 26886 9999
Q ss_pred ecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEcc
Q 001070 192 EDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASA 243 (1165)
Q Consensus 192 D~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a 243 (1165)
|+.+|.|..+++ |.|..|.++.| .|..+. +|| +|+-|++++|.||-
T Consensus 272 D~~~g~p~~s~~-~~~k~Vq~l~w--h~~~p~--~LL-sGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 272 DVDTGKPKSSIT-HHGKKVQTLEW--HPYEPS--VLL-SGSYDGTVALKDCR 317 (463)
T ss_pred EcCCCCcceehh-hcCCceeEEEe--cCCCce--EEE-eccccceEEeeecc
Confidence 999999999998 55889999999 465544 567 69999999999995
No 106
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=97.82 E-value=0.00015 Score=83.37 Aligned_cols=168 Identities=19% Similarity=0.290 Sum_probs=107.7
Q ss_pred cccccccccC---CCcccccccEeee--------cCceEEEeecCCcEEEEeCcc-----hh---hHhhcCCcc------
Q 001070 133 LEVNPITKYG---SDPELLIGRQIAV--------NKHYVCYGLKGGNVRVLNLNT-----AT---RSLLRGHTK------ 187 (1165)
Q Consensus 133 lev~pIt~Y~---sd~~~~~GR~IAV--------n~~yIayG~kdg~IRVwdi~t-----~i---r~llrGH~q------ 187 (1165)
+-|-|+.+-| .+|.++-|..=.| |+.-||+|++|-.|.||.|-- .+ .-.|.||..
T Consensus 59 f~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~ 138 (472)
T KOG0303|consen 59 FLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQ 138 (472)
T ss_pred eeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEe
Confidence 4566666655 4455555554222 688999999999999999863 11 235788887
Q ss_pred ----------------------------------------------------------EEEeecCCCceeEEecCCCCCC
Q 001070 188 ----------------------------------------------------------IKIWEDSKVAPLIILKPHGGQP 209 (1165)
Q Consensus 188 ----------------------------------------------------------VriWD~~~g~pl~~lephdG~s 209 (1165)
|||||.++|..|+.-.+|.|..
T Consensus 139 wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k 218 (472)
T KOG0303|consen 139 WHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAK 218 (472)
T ss_pred ecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCC
Confidence 6666666666666666667777
Q ss_pred cceeEeecCCCCCCceEEEeec---CCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecC
Q 001070 210 VNSAQYLTAPNQAGHIILVTAG---PLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQ 286 (1165)
Q Consensus 210 V~SVaFl~aP~~~d~~~lvtsG---slnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~ 286 (1165)
-..+.|| .++. +.|.| -.+|.|-|||-..= +...-.++|.-- ..-+| =-+|++
T Consensus 219 ~~Raifl-----~~g~-i~tTGfsr~seRq~aLwdp~nl---------~eP~~~~elDtS-------nGvl~--PFyD~d 274 (472)
T KOG0303|consen 219 PARAIFL-----ASGK-IFTTGFSRMSERQIALWDPNNL---------EEPIALQELDTS-------NGVLL--PFYDPD 274 (472)
T ss_pred cceeEEe-----ccCc-eeeeccccccccceeccCcccc---------cCcceeEEeccC-------CceEE--eeecCC
Confidence 7777776 4555 34434 37899999996332 223555666520 01111 125888
Q ss_pred CcEEEEeccCCCcEEEEEeecCCCccccccccccccccccce
Q 001070 287 AGLLLFANAKKNAIYSVHLGYGNNSAATRIDYIAEFTVTMPV 328 (1165)
Q Consensus 287 a~~ilLan~~r~aIYalhl~~g~~~~~~r~dyiaeF~v~~PI 328 (1165)
+++|-|.-----+|--.++.. ..+.+-||.+|+-.-|=
T Consensus 275 t~ivYl~GKGD~~IRYyEit~----d~P~~hyln~f~S~epQ 312 (472)
T KOG0303|consen 275 TSIVYLCGKGDSSIRYFEITN----EPPFVHYLNTFSSKEPQ 312 (472)
T ss_pred CCEEEEEecCCcceEEEEecC----CCceeEEecccccCCcc
Confidence 888888776666666555553 36689999999866553
No 107
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=97.82 E-value=5.7e-05 Score=83.49 Aligned_cols=80 Identities=15% Similarity=0.206 Sum_probs=61.2
Q ss_pred EEEeecCCCc-eeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEecc
Q 001070 188 IKIWEDSKVA-PLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLK 266 (1165)
Q Consensus 188 VriWD~~~g~-pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~ 266 (1165)
|++||.++|. .+..-+-| +..++.+.|. +|.-+.|| ||-|++-||||. ....|+.|++
T Consensus 171 is~~da~~g~~~v~s~~~h-~~~Ind~q~s-----~d~T~FiT-~s~Dttakl~D~------------~tl~v~Kty~-- 229 (327)
T KOG0643|consen 171 ISIYDARTGKELVDSDEEH-SSKINDLQFS-----RDRTYFIT-GSKDTTAKLVDV------------RTLEVLKTYT-- 229 (327)
T ss_pred EEEEEcccCceeeechhhh-cccccccccc-----CCcceEEe-cccCccceeeec------------cceeeEEEee--
Confidence 7777777773 45555555 4588888883 44455775 999999999998 4459999999
Q ss_pred CCCCCccccccEEEEEeecCCcEEEEecc
Q 001070 267 SSAKPRVEEAFFNQVVVLSQAGLLLFANA 295 (1165)
Q Consensus 267 ~s~~~~~~~aff~sV~~~p~a~~ilLan~ 295 (1165)
.+--+|.+++.|--.+|+|.--
T Consensus 230 -------te~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 230 -------TERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred -------ecccccceecccccceEEecCC
Confidence 3567889999999999888753
No 108
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=97.79 E-value=0.00015 Score=81.65 Aligned_cols=134 Identities=21% Similarity=0.412 Sum_probs=96.6
Q ss_pred eeecCceEEEeecCCcEEEEeCcc--hhhHhhcCCcc-------------------------------------------
Q 001070 153 IAVNKHYVCYGLKGGNVRVLNLNT--ATRSLLRGHTK------------------------------------------- 187 (1165)
Q Consensus 153 IAVn~~yIayG~kdg~IRVwdi~t--~ir~llrGH~q------------------------------------------- 187 (1165)
++-|...||+|+-||.|+||-|.| -+|..=|.|++
T Consensus 271 FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSy 350 (508)
T KOG0275|consen 271 FSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSY 350 (508)
T ss_pred ecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcccc
Confidence 444677889999999999999999 56667778888
Q ss_pred ---------------------EEEeecCCCceeEEecCCCCC-CcceeEeecCCCCCCceEEEeecCCCceEEEeEccCc
Q 001070 188 ---------------------IKIWEDSKVAPLIILKPHGGQ-PVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASE 245 (1165)
Q Consensus 188 ---------------------VriWD~~~g~pl~~lephdG~-sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~ 245 (1165)
||||+..++.|+.+|+|...+ +|++|..+ |-.|.|. +| .. -..+|-|-+..+
T Consensus 351 vn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~--PKnpeh~-iV-CN-rsntv~imn~qG- 424 (508)
T KOG0275|consen 351 VNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILL--PKNPEHF-IV-CN-RSNTVYIMNMQG- 424 (508)
T ss_pred ccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEc--CCCCceE-EE-Ec-CCCeEEEEeccc-
Confidence 999999999999999998433 99999996 7777744 44 33 233566666522
Q ss_pred CCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEeecCCC
Q 001070 246 EGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGYGNN 310 (1165)
Q Consensus 246 ~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~g~~ 310 (1165)
.-+.+|.- -. |-..+|+ ..+++|.|.||.-.. .-..+||+-+..|.-
T Consensus 425 ------------QvVrsfsS--Gk--REgGdFi-~~~lSpkGewiYcig-ED~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 425 ------------QVVRSFSS--GK--REGGDFI-NAILSPKGEWIYCIG-EDGVLYCFSVLSGKL 471 (508)
T ss_pred ------------eEEeeecc--CC--ccCCceE-EEEecCCCcEEEEEc-cCcEEEEEEeecCce
Confidence 34444441 11 1234676 678999999997654 446789988876554
No 109
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.00027 Score=77.87 Aligned_cols=125 Identities=15% Similarity=0.282 Sum_probs=92.8
Q ss_pred CceEEEeecCCcEEEEeCcc--hhhHhhcCCcc-----------------------EEEeecCCCceeEEecCCCCCCcc
Q 001070 157 KHYVCYGLKGGNVRVLNLNT--ATRSLLRGHTK-----------------------IKIWEDSKVAPLIILKPHGGQPVN 211 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~t--~ir~llrGH~q-----------------------VriWD~~~g~pl~~lephdG~sV~ 211 (1165)
..-+.+..-||.+|+||..- .=-+.|+-|++ ||+||-.-+.-|.+|.+|. ..||
T Consensus 73 e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~-~~Iy 151 (311)
T KOG0277|consen 73 ENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHN-SCIY 151 (311)
T ss_pred cceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCc-cEEE
Confidence 34455677899999999664 44457889988 9999988777799999884 5999
Q ss_pred eeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEE
Q 001070 212 SAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLL 291 (1165)
Q Consensus 212 SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~il 291 (1165)
.++| +|..++ |+.|.|.|.+++|||+... | +-+- ++- |..=.+.+--.--...||
T Consensus 152 ~a~~--sp~~~n---lfas~Sgd~~l~lwdvr~~-g----------k~~~-i~a--------h~~Eil~cdw~ky~~~vl 206 (311)
T KOG0277|consen 152 QAAF--SPHIPN---LFASASGDGTLRLWDVRSP-G----------KFMS-IEA--------HNSEILCCDWSKYNHNVL 206 (311)
T ss_pred EEec--CCCCCC---eEEEccCCceEEEEEecCC-C----------ceeE-EEe--------ccceeEeecccccCCcEE
Confidence 9999 688888 9999999999999997544 2 3333 553 332233444444456677
Q ss_pred EeccCCCcEEEEEeec
Q 001070 292 FANAKKNAIYSVHLGY 307 (1165)
Q Consensus 292 Lan~~r~aIYalhl~~ 307 (1165)
..-.-.++||.--|..
T Consensus 207 ~Tg~vd~~vr~wDir~ 222 (311)
T KOG0277|consen 207 ATGGVDNLVRGWDIRN 222 (311)
T ss_pred EecCCCceEEEEehhh
Confidence 8888888888877764
No 110
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=97.74 E-value=9.6e-05 Score=84.95 Aligned_cols=133 Identities=23% Similarity=0.386 Sum_probs=97.2
Q ss_pred cccccccccCCCcccccccEeeecCceEEE---eecCCcEEEEeCcc-----hhhHhhcCCcc-----------------
Q 001070 133 LEVNPITKYGSDPELLIGRQIAVNKHYVCY---GLKGGNVRVLNLNT-----ATRSLLRGHTK----------------- 187 (1165)
Q Consensus 133 lev~pIt~Y~sd~~~~~GR~IAVn~~yIay---G~kdg~IRVwdi~t-----~ir~llrGH~q----------------- 187 (1165)
.+--.++.-.||-.| .|||++|||- ++-.|-.-|+=++. ...-+++||+.
T Consensus 25 YddIrVs~~tWDS~f-----cavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIAS 99 (472)
T KOG0303|consen 25 YDDIRVSRVTWDSSF-----CAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIAS 99 (472)
T ss_pred hcceeeeeeeccccc-----cccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeec
Confidence 334455666787744 6899999987 33355666666664 33349999998
Q ss_pred ------EEEeecCCC-------ceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCC
Q 001070 188 ------IKIWEDSKV-------APLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHA 254 (1165)
Q Consensus 188 ------VriWD~~~g-------~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~ 254 (1165)
|+||++-.+ .|+..|++| -..|..|+| .|-... +|+ |++-|.+|+||++.+++.
T Consensus 100 gSeD~~v~vW~IPe~~l~~~ltepvv~L~gH-~rrVg~V~w--HPtA~N--VLl-sag~Dn~v~iWnv~tgea------- 166 (472)
T KOG0303|consen 100 GSEDTKVMVWQIPENGLTRDLTEPVVELYGH-QRRVGLVQW--HPTAPN--VLL-SAGSDNTVSIWNVGTGEA------- 166 (472)
T ss_pred CCCCceEEEEECCCcccccCcccceEEEeec-ceeEEEEee--cccchh--hHh-hccCCceEEEEeccCCce-------
Confidence 999998765 379999988 469999999 555444 355 566889999999977743
Q ss_pred CCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCC
Q 001070 255 ESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKK 297 (1165)
Q Consensus 255 ~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r 297 (1165)
+-||. |.+.+.++..+.+|++++-+...|
T Consensus 167 -----li~l~---------hpd~i~S~sfn~dGs~l~TtckDK 195 (472)
T KOG0303|consen 167 -----LITLD---------HPDMVYSMSFNRDGSLLCTTCKDK 195 (472)
T ss_pred -----eeecC---------CCCeEEEEEeccCCceeeeecccc
Confidence 33433 788999999999999888776655
No 111
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=6.4e-05 Score=82.31 Aligned_cols=87 Identities=22% Similarity=0.441 Sum_probs=71.0
Q ss_pred CceEEEeecCCcEEEEeCcchh----hHhhcCCcc------------------------EEEeecCCCc--eeEEecCCC
Q 001070 157 KHYVCYGLKGGNVRVLNLNTAT----RSLLRGHTK------------------------IKIWEDSKVA--PLIILKPHG 206 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~t~i----r~llrGH~q------------------------VriWD~~~g~--pl~~lephd 206 (1165)
|+.|||...||+|||+...+.. -..|+||+. |-||-...|. -...+..|+
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~ 102 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS 102 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc
Confidence 7788899999999999998733 347999999 8899888873 356666665
Q ss_pred CCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCC
Q 001070 207 GQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGW 248 (1165)
Q Consensus 207 G~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~ 248 (1165)
+ +|+||+| +|+.-+ ++++.|+.|.+|.+.+.....||
T Consensus 103 ~-SVNsV~w--apheyg--l~LacasSDG~vsvl~~~~~g~w 139 (299)
T KOG1332|consen 103 A-SVNSVAW--APHEYG--LLLACASSDGKVSVLTYDSSGGW 139 (299)
T ss_pred c-cceeecc--cccccc--eEEEEeeCCCcEEEEEEcCCCCc
Confidence 4 9999999 888755 36778999999999999777555
No 112
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.69 E-value=8.2e-05 Score=81.65 Aligned_cols=117 Identities=18% Similarity=0.325 Sum_probs=76.5
Q ss_pred ecCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCCCceeEEecCCCCCCcc
Q 001070 155 VNKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSKVAPLIILKPHGGQPVN 211 (1165)
Q Consensus 155 Vn~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~g~pl~~lephdG~sV~ 211 (1165)
.+|-||.+..|||.=-+-+=.| .---+|.||.. -||||.-+|--|+.|+ | -|-|-
T Consensus 27 p~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-h-khivk 104 (334)
T KOG0278|consen 27 PDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-H-KHIVK 104 (334)
T ss_pred CCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-h-hheee
Confidence 4566777777877655555555 55557777777 5677776665555554 1 24555
Q ss_pred eeEee--------------------cCCC-------------------CCCceEEEeecCCCceEEEeEccCcCCCCCCC
Q 001070 212 SAQYL--------------------TAPN-------------------QAGHIILVTAGPLNREVKLWASASEEGWSLPT 252 (1165)
Q Consensus 212 SVaFl--------------------~aP~-------------------~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~ 252 (1165)
+|||. ..|+ ..|+. ++ |..-|++|+|||+.++
T Consensus 105 ~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~-iL-SSadd~tVRLWD~rTg------- 175 (334)
T KOG0278|consen 105 AVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKC-IL-SSADDKTVRLWDHRTG------- 175 (334)
T ss_pred eEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCce-EE-eeccCCceEEEEeccC-------
Confidence 55551 1121 12333 34 4489999999999665
Q ss_pred CCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccC
Q 001070 253 HAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAK 296 (1165)
Q Consensus 253 ~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~ 296 (1165)
+-+|+|+|.+.. .+.-+++++.+|..|+..
T Consensus 176 -----t~v~sL~~~s~V---------tSlEvs~dG~ilTia~gs 205 (334)
T KOG0278|consen 176 -----TEVQSLEFNSPV---------TSLEVSQDGRILTIAYGS 205 (334)
T ss_pred -----cEEEEEecCCCC---------cceeeccCCCEEEEecCc
Confidence 899999996543 366678888888887765
No 113
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.66 E-value=0.00033 Score=80.09 Aligned_cols=152 Identities=22% Similarity=0.331 Sum_probs=107.5
Q ss_pred cccccEeeecCceEEE--eecCCcEEEEeCcchhhHhhcCCcc-----------------------EEEeecCC-C----
Q 001070 147 LLIGRQIAVNKHYVCY--GLKGGNVRVLNLNTATRSLLRGHTK-----------------------IKIWEDSK-V---- 196 (1165)
Q Consensus 147 ~~~GR~IAVn~~yIay--G~kdg~IRVwdi~t~ir~llrGH~q-----------------------VriWD~~~-g---- 196 (1165)
..+-|-+|=+-++||. ++-|-.|||+|-+...-..|+.-.| |-||.+.. +
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r 177 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANR 177 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCccccccc
Confidence 3456778888888776 7889999999998766666666666 89997632 2
Q ss_pred -------ceeEEecCCCCC-CcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCC-------------C-
Q 001070 197 -------APLIILKPHGGQ-PVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTH-------------A- 254 (1165)
Q Consensus 197 -------~pl~~lephdG~-sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~-------------~- 254 (1165)
.++++++.. || +|.|+.+ ++|| -.|+++...++.|.|||.+.+.+.-++-- +
T Consensus 178 ~~~~~s~~~~qvl~~p-gh~pVtsmqw--n~dg---t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd 251 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQDP-GHNPVTSMQW--NEDG---TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGD 251 (445)
T ss_pred ccccccccchhheeCC-CCceeeEEEE--cCCC---CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCC
Confidence 246666644 55 9999999 5554 44999999999999999988765433310 0
Q ss_pred -----------CCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEeec
Q 001070 255 -----------ESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGY 307 (1165)
Q Consensus 255 -----------~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~ 307 (1165)
..|.|.|+-.- +.-.-+.. .+-..+-+|+|++||.+......||-+|+.-
T Consensus 252 ~lfaAt~davfrlw~e~q~wt~--erw~lgsg-rvqtacWspcGsfLLf~~sgsp~lysl~f~~ 312 (445)
T KOG2139|consen 252 VLFAATCDAVFRLWQENQSWTK--ERWILGSG-RVQTACWSPCGSFLLFACSGSPRLYSLTFDG 312 (445)
T ss_pred EEEEecccceeeeehhccccee--cceeccCC-ceeeeeecCCCCEEEEEEcCCceEEEEeecC
Confidence 13555554331 11111222 5555678999999999999999999999984
No 114
>KOG4328 consensus WD40 protein [Function unknown]
Probab=97.66 E-value=0.0002 Score=83.47 Aligned_cols=137 Identities=20% Similarity=0.276 Sum_probs=94.7
Q ss_pred ccccccEeee------cCceEEEeecCCcEEEEeCcc-----hhhHhhcCCcc---------------------------
Q 001070 146 ELLIGRQIAV------NKHYVCYGLKGGNVRVLNLNT-----ATRSLLRGHTK--------------------------- 187 (1165)
Q Consensus 146 ~~~~GR~IAV------n~~yIayG~kdg~IRVwdi~t-----~ir~llrGH~q--------------------------- 187 (1165)
....||-.++ |.+.|+.|.|-|+|=+||..+ .--.+|.+|++
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~ 262 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ 262 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence 3344554444 579999999999999999954 22238999988
Q ss_pred ----------------------------------------EEEeecCCCc-eeEEecCCCCCCcceeEeecCCCCCCceE
Q 001070 188 ----------------------------------------IKIWEDSKVA-PLIILKPHGGQPVNSAQYLTAPNQAGHII 226 (1165)
Q Consensus 188 ----------------------------------------VriWD~~~g~-pl~~lephdG~sV~SVaFl~aP~~~d~~~ 226 (1165)
.-+||.+++. -++-|+-|+ ..|.+|+| .|-.+.
T Consensus 263 D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~-kKI~sv~~--NP~~p~--- 336 (498)
T KOG4328|consen 263 DFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHK-KKITSVAL--NPVCPW--- 336 (498)
T ss_pred eecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhh-cccceeec--CCCCch---
Confidence 4577776542 366666665 48999999 666654
Q ss_pred EEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEe
Q 001070 227 LVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHL 305 (1165)
Q Consensus 227 lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl 305 (1165)
++++|++|+|.||||+-.=.+ +.-.-+-|++ |..-++++.++|+++- ||.+-..+.|-++-.
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~-------K~sp~lst~~---------HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRG-------KASPFLSTLP---------HRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDS 398 (498)
T ss_pred heeecccCcceeeeehhhhcC-------CCCcceeccc---------ccceeeeeEEcCCCCc-eEeeccCCceEEeec
Confidence 555699999999999833211 1101344444 7888999999999999 666666666655533
No 115
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=97.66 E-value=3.8e-05 Score=88.44 Aligned_cols=93 Identities=23% Similarity=0.361 Sum_probs=74.6
Q ss_pred cCceEEEeecCCcEEEEeCcc-h--hhHhhcCCcc----------------------EEEeecCCCceeEEecCCCCCCc
Q 001070 156 NKHYVCYGLKGGNVRVLNLNT-A--TRSLLRGHTK----------------------IKIWEDSKVAPLIILKPHGGQPV 210 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t-~--ir~llrGH~q----------------------VriWD~~~g~pl~~lephdG~sV 210 (1165)
|.--+++|.-|..|.+||... . ....|.|--. +|+|++..+..+++|.+|. +.|
T Consensus 186 ~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHt-dkV 264 (459)
T KOG0288|consen 186 NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHT-DKV 264 (459)
T ss_pred CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccc-cce
Confidence 335678999999999999986 3 5557776633 9999999999999999985 589
Q ss_pred ceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccC
Q 001070 211 NSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKS 267 (1165)
Q Consensus 211 ~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~ 267 (1165)
.++-|. .++- .|++|+.||+||+||+... .|..|+-+.+
T Consensus 265 t~ak~~-----~~~~-~vVsgs~DRtiK~WDl~k~------------~C~kt~l~~S 303 (459)
T KOG0288|consen 265 TAAKFK-----LSHS-RVVSGSADRTIKLWDLQKA------------YCSKTVLPGS 303 (459)
T ss_pred eeehhh-----cccc-ceeeccccchhhhhhhhhh------------heeccccccc
Confidence 999995 3322 2678999999999999554 8999988743
No 116
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=97.63 E-value=0.00016 Score=87.51 Aligned_cols=137 Identities=18% Similarity=0.250 Sum_probs=95.8
Q ss_pred eEEEeecCCcEEEEeCc-c--hhhHhhcCCcc--------------------EEEeecCCC---c---------------
Q 001070 159 YVCYGLKGGNVRVLNLN-T--ATRSLLRGHTK--------------------IKIWEDSKV---A--------------- 197 (1165)
Q Consensus 159 yIayG~kdg~IRVwdi~-t--~ir~llrGH~q--------------------VriWD~~~g---~--------------- 197 (1165)
|+++|..||+|++|-+. . .....|.||+. |++||.+.- +
T Consensus 71 ~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLc 150 (764)
T KOG1063|consen 71 EMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLC 150 (764)
T ss_pred eEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHH
Confidence 89999999999999988 3 22236778877 889987221 0
Q ss_pred --------------------------------eeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCc
Q 001070 198 --------------------------------PLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASE 245 (1165)
Q Consensus 198 --------------------------------pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~ 245 (1165)
-+..+++| +++|-|++| +--+.+.. +|+|||+|+.||||.+...
T Consensus 151 L~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH-~DWIrsl~f--~~~~~~~~-~laS~SQD~yIRiW~i~~~ 226 (764)
T KOG1063|consen 151 LAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGH-TDWIRSLAF--ARLGGDDL-LLASSSQDRYIRIWRIVLG 226 (764)
T ss_pred HhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeecc-chhhhhhhh--hccCCCcE-EEEecCCceEEEEEEEEec
Confidence 15667777 579999999 33333434 7779999999999998543
Q ss_pred C--C-------CCCCCCCCCcceEEEEeccCC--CCCccccccEEEEEeecCCcEEEEeccCCCc
Q 001070 246 E--G-------WSLPTHAESWKCTQTLDLKSS--AKPRVEEAFFNQVVVLSQAGLLLFANAKKNA 299 (1165)
Q Consensus 246 ~--~-------~~~~~~~~~w~C~QTLe~~~s--~~~~~~~aff~sV~~~p~a~~ilLan~~r~a 299 (1165)
. + -..+++.....|.-++.+.-+ +-.-||+|.+++|.-+|.+.-||-|.+.+--
T Consensus 227 ~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksm 291 (764)
T KOG1063|consen 227 DDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSM 291 (764)
T ss_pred CCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcce
Confidence 2 1 112233345678777775443 3334899999999999999777777666543
No 117
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=97.61 E-value=0.00037 Score=77.33 Aligned_cols=132 Identities=17% Similarity=0.276 Sum_probs=93.6
Q ss_pred ccE--eeec---CceEEEeecCCcEEEEeCcc----hhhH-hhcCCcc----------------------EEEeecCCC-
Q 001070 150 GRQ--IAVN---KHYVCYGLKGGNVRVLNLNT----ATRS-LLRGHTK----------------------IKIWEDSKV- 196 (1165)
Q Consensus 150 GR~--IAVn---~~yIayG~kdg~IRVwdi~t----~ir~-llrGH~q----------------------VriWD~~~g- 196 (1165)
||- +|.+ |..||+|..|+.||||+... ..|. |=.||+. +-||....+
T Consensus 15 ~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~e 94 (312)
T KOG0645|consen 15 DRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGE 94 (312)
T ss_pred CcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCc
Confidence 454 6666 33899999999999999992 4444 3345655 678877665
Q ss_pred -ceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCcccc
Q 001070 197 -APLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEE 275 (1165)
Q Consensus 197 -~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~ 275 (1165)
.++.++|+|+ +-|-||+|. + ++.+|. ..+-||.+-||+.+.+ +-..|.--|+.| .
T Consensus 95 fecv~~lEGHE-nEVK~Vaws--~---sG~~LA-TCSRDKSVWiWe~ded---------dEfec~aVL~~H--------t 150 (312)
T KOG0645|consen 95 FECVATLEGHE-NEVKCVAWS--A---SGNYLA-TCSRDKSVWIWEIDED---------DEFECIAVLQEH--------T 150 (312)
T ss_pred eeEEeeeeccc-cceeEEEEc--C---CCCEEE-EeeCCCeEEEEEecCC---------CcEEEEeeeccc--------c
Confidence 4699999996 589999993 4 445466 5899999999999744 346999999853 3
Q ss_pred ccEEEEEeecCCcEEEEeccCCCcEEEEEee
Q 001070 276 AFFNQVVVLSQAGLLLFANAKKNAIYSVHLG 306 (1165)
Q Consensus 276 aff~sV~~~p~a~~ilLan~~r~aIYalhl~ 306 (1165)
-=+-+|+-+|.-.+|+ +..+-|.|-+..-+
T Consensus 151 qDVK~V~WHPt~dlL~-S~SYDnTIk~~~~~ 180 (312)
T KOG0645|consen 151 QDVKHVIWHPTEDLLF-SCSYDNTIKVYRDE 180 (312)
T ss_pred ccccEEEEcCCcceeE-EeccCCeEEEEeec
Confidence 3344788888777654 44445666554444
No 118
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.00025 Score=77.79 Aligned_cols=125 Identities=21% Similarity=0.287 Sum_probs=94.2
Q ss_pred CceEEEeecCCcEEEEeCcc----hhhHhhcCCcc------------------------------------EEEeecCCC
Q 001070 157 KHYVCYGLKGGNVRVLNLNT----ATRSLLRGHTK------------------------------------IKIWEDSKV 196 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~t----~ir~llrGH~q------------------------------------VriWD~~~g 196 (1165)
|-.|+.|+.||.|+|+++++ .-..+..-|+. ||||+...+
T Consensus 116 gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~ 195 (299)
T KOG1332|consen 116 GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD 195 (299)
T ss_pred ceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc
Confidence 45577899999999999986 34557888887 999998876
Q ss_pred ce-eE-EecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccc
Q 001070 197 AP-LI-ILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVE 274 (1165)
Q Consensus 197 ~p-l~-~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~ 274 (1165)
.= ++ +|+.|. +.|..||+ +|.-...++.|+|+|+|+++-||-.. .+ .+.|+-+---+|
T Consensus 196 ~w~~e~~l~~H~-dwVRDVAw--aP~~gl~~s~iAS~SqDg~viIwt~~-~e-------~e~wk~tll~~f--------- 255 (299)
T KOG1332|consen 196 SWKLERTLEGHK-DWVRDVAW--APSVGLPKSTIASCSQDGTVIIWTKD-EE-------YEPWKKTLLEEF--------- 255 (299)
T ss_pred chhhhhhhhhcc-hhhhhhhh--ccccCCCceeeEEecCCCcEEEEEec-Cc-------cCcccccccccC---------
Confidence 31 33 488885 49999999 79888888899999999999999986 32 255665433333
Q ss_pred cccEEEEEeecCCcEEEEeccCCCcEEE
Q 001070 275 EAFFNQVVVLSQAGLLLFANAKKNAIYS 302 (1165)
Q Consensus 275 ~aff~sV~~~p~a~~ilLan~~r~aIYa 302 (1165)
.+.+-+|.-++.|.+|-|+.-. |.||.
T Consensus 256 ~~~~w~vSWS~sGn~LaVs~Gd-Nkvtl 282 (299)
T KOG1332|consen 256 PDVVWRVSWSLSGNILAVSGGD-NKVTL 282 (299)
T ss_pred CcceEEEEEeccccEEEEecCC-cEEEE
Confidence 3555688889999988888765 33443
No 119
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=97.58 E-value=0.0008 Score=74.51 Aligned_cols=136 Identities=17% Similarity=0.278 Sum_probs=92.1
Q ss_pred eee--cCceEEEeecCCcEEEEeCcc---hhhHhhcCCcc-----------------------EEEeecCCCceeEEecC
Q 001070 153 IAV--NKHYVCYGLKGGNVRVLNLNT---ATRSLLRGHTK-----------------------IKIWEDSKVAPLIILKP 204 (1165)
Q Consensus 153 IAV--n~~yIayG~kdg~IRVwdi~t---~ir~llrGH~q-----------------------VriWD~~~g~pl~~lep 204 (1165)
||- ||.+|+.|+-|+.++|||+.. ......+||+. |||||++.+.|.++.+-
T Consensus 26 v~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~ 105 (313)
T KOG1407|consen 26 VAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIET 105 (313)
T ss_pred EEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeec
Confidence 444 599999999999999999997 33347899995 99999999999888876
Q ss_pred CCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccC--------------cCCCCCCCCC---C-CcceEEEEecc
Q 001070 205 HGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASAS--------------EEGWSLPTHA---E-SWKCTQTLDLK 266 (1165)
Q Consensus 205 hdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~--------------~~~~~~~~~~---~-~w~C~QTLe~~ 266 (1165)
- |+-++ ++| .|+|.. .++ |..|..|-..|... +.-|-.+.+- . +--|++-|.++
T Consensus 106 ~-~eni~-i~w--sp~g~~---~~~-~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp 177 (313)
T KOG1407|consen 106 K-GENIN-ITW--SPDGEY---IAV-GNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP 177 (313)
T ss_pred c-CcceE-EEE--cCCCCE---EEE-ecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEecc
Confidence 5 44444 334 354433 454 55666666666532 1223322221 1 23699999987
Q ss_pred CCC---CCccccccEEEEEeecCCcEEEEeccC
Q 001070 267 SSA---KPRVEEAFFNQVVVLSQAGLLLFANAK 296 (1165)
Q Consensus 267 ~s~---~~~~~~aff~sV~~~p~a~~ilLan~~ 296 (1165)
+.. ..+.|.+=+.-+.++|+|+++-...+.
T Consensus 178 sLkpv~si~AH~snCicI~f~p~GryfA~GsAD 210 (313)
T KOG1407|consen 178 SLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD 210 (313)
T ss_pred ccccccccccCCcceEEEEECCCCceEeecccc
Confidence 543 234566767778899999988776554
No 120
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.55 E-value=0.00028 Score=74.64 Aligned_cols=119 Identities=18% Similarity=0.342 Sum_probs=83.3
Q ss_pred ceeecCCceEEecccCCCCCCCCCCcc-cccccccCCCcccccccEeeecCceEEEeecCCcEEEEeCcc-hhhHhhcCC
Q 001070 108 GKRVFGDYVAYDVDAVEEGREPTQQLE-VNPITKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNT-ATRSLLRGH 185 (1165)
Q Consensus 108 Gr~l~g~~~~~dVd~~~~ge~~~pqle-v~pIt~Y~sd~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t-~ir~llrGH 185 (1165)
|+..-|...+|-++.... ....=+++ -.||....|+| .|+.+|| +||..++.|++||++. .+..+-.++
T Consensus 32 ~ks~~~~~~l~~~~~~~~-~~~~i~l~~~~~I~~~~WsP---~g~~fav-----i~g~~~~~v~lyd~~~~~i~~~~~~~ 102 (194)
T PF08662_consen 32 GKSYYGEFELFYLNEKNI-PVESIELKKEGPIHDVAWSP---NGNEFAV-----IYGSMPAKVTLYDVKGKKIFSFGTQP 102 (194)
T ss_pred cceEEeeEEEEEEecCCC-ccceeeccCCCceEEEEECc---CCCEEEE-----EEccCCcccEEEcCcccEeEeecCCC
Confidence 444456777888866432 22201332 23788888888 5888886 8998899999999986 444333222
Q ss_pred cc----------------------EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecC-----CCceEE
Q 001070 186 TK----------------------IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGP-----LNREVK 238 (1165)
Q Consensus 186 ~q----------------------VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGs-----lnrtIK 238 (1165)
-. |+|||+++...+..++-+ .+..++|. |++++++|+.+ .|..+|
T Consensus 103 ~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~---~~t~~~Ws-----PdGr~~~ta~t~~r~~~dng~~ 174 (194)
T PF08662_consen 103 RNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS---DATDVEWS-----PDGRYLATATTSPRLRVDNGFK 174 (194)
T ss_pred ceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC---cEEEEEEc-----CCCCEEEEEEeccceeccccEE
Confidence 22 899999998888877633 47899994 55567888877 499999
Q ss_pred EeEcc
Q 001070 239 LWASA 243 (1165)
Q Consensus 239 LW~~a 243 (1165)
||+..
T Consensus 175 Iw~~~ 179 (194)
T PF08662_consen 175 IWSFQ 179 (194)
T ss_pred EEEec
Confidence 99984
No 121
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.55 E-value=0.00028 Score=87.54 Aligned_cols=135 Identities=15% Similarity=0.258 Sum_probs=89.2
Q ss_pred EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccC
Q 001070 188 IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKS 267 (1165)
Q Consensus 188 VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~ 267 (1165)
||+-+..++....++++|+| +|-+|.| .|++ .||+ +.+-|..|++|++..+ .|..||.+..
T Consensus 120 vK~~~~~D~s~~~~lrgh~a-pVl~l~~--~p~~---~fLA-vss~dG~v~iw~~~~~------------~~~~tl~~v~ 180 (933)
T KOG1274|consen 120 VKLLNLDDSSQEKVLRGHDA-PVLQLSY--DPKG---NFLA-VSSCDGKVQIWDLQDG------------ILSKTLTGVD 180 (933)
T ss_pred EEEEeccccchheeecccCC-ceeeeeE--cCCC---CEEE-EEecCceEEEEEcccc------------hhhhhcccCC
Confidence 78887777777899999987 9999999 4555 5455 6789999999999655 8888888644
Q ss_pred CCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEeecCCCccccccccccccccccceeeeee-ccCCCCc------
Q 001070 268 SAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGYGNNSAATRIDYIAEFTVTMPVLSFTG-TIDPPSE------ 340 (1165)
Q Consensus 268 s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~g~~~~~~r~dyiaeF~v~~PILSft~-~~d~~ge------ 340 (1165)
....-.....+..++-+|+++-+++...+. -|-. |..+.-...|+|-..+.-+. |+. ++.|.|.
T Consensus 181 k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~-~Vkv----y~r~~we~~f~Lr~~~~ss~----~~~~~wsPnG~YiAAs~ 251 (933)
T KOG1274|consen 181 KDNEFILSRICTRLAWHPKGGTLAVPPVDN-TVKV----YSRKGWELQFKLRDKLSSSK----FSDLQWSPNGKYIAAST 251 (933)
T ss_pred ccccccccceeeeeeecCCCCeEEeeccCC-eEEE----EccCCceeheeecccccccc----eEEEEEcCCCcEEeeec
Confidence 332111245788999999988666655543 2222 23333345566655555443 222 3445443
Q ss_pred --ceEEEEEeeh
Q 001070 341 --HIIKLYCVQT 350 (1165)
Q Consensus 341 --~~vq~yCvQt 350 (1165)
+.|-|+-|+|
T Consensus 252 ~~g~I~vWnv~t 263 (933)
T KOG1274|consen 252 LDGQILVWNVDT 263 (933)
T ss_pred cCCcEEEEeccc
Confidence 4577888887
No 122
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=97.54 E-value=0.00043 Score=80.57 Aligned_cols=136 Identities=13% Similarity=0.199 Sum_probs=99.6
Q ss_pred CceEEEeecCCcEEEEeCc--c-hhhHhhcCCcc-----------------------EEEeecCCC-ceeEEecCCCCCC
Q 001070 157 KHYVCYGLKGGNVRVLNLN--T-ATRSLLRGHTK-----------------------IKIWEDSKV-APLIILKPHGGQP 209 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~--t-~ir~llrGH~q-----------------------VriWD~~~g-~pl~~lephdG~s 209 (1165)
....|+...|+..-|||+. + ..++.-.+|+. |++||.|+- .|++.+++|+ ..
T Consensus 240 ~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~-de 318 (422)
T KOG0264|consen 240 EDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHE-DE 318 (422)
T ss_pred hhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCC-cc
Confidence 5566778899999999999 4 77778999998 999999986 5899999994 59
Q ss_pred cceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcE
Q 001070 210 VNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGL 289 (1165)
Q Consensus 210 V~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ 289 (1165)
|+.|.| +|+.-. +++|...||.+.+||+..-..-..+.+.+.+.- .|-| ...||.+-++-+.-+|.--|
T Consensus 319 v~~V~W--SPh~et---vLASSg~D~rl~vWDls~ig~eq~~eda~dgpp--EllF----~HgGH~~kV~DfsWnp~ePW 387 (422)
T KOG0264|consen 319 VFQVEW--SPHNET---VLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPP--ELLF----IHGGHTAKVSDFSWNPNEPW 387 (422)
T ss_pred eEEEEe--CCCCCc---eeEecccCCcEEEEeccccccccChhhhccCCc--ceeE----EecCcccccccccCCCCCCe
Confidence 999999 677655 455556999999999955422111111111100 0111 22478888888889999999
Q ss_pred EEEeccCCCcEEEEE
Q 001070 290 LLFANAKKNAIYSVH 304 (1165)
Q Consensus 290 ilLan~~r~aIYalh 304 (1165)
++.+-+.-|.+-+-.
T Consensus 388 ~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 388 TIASVAEDNILQIWQ 402 (422)
T ss_pred EEEEecCCceEEEee
Confidence 999998887665543
No 123
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=97.53 E-value=0.00036 Score=83.69 Aligned_cols=172 Identities=22% Similarity=0.350 Sum_probs=119.4
Q ss_pred EEEeecCCcEEEEeCcchhh-HhhcCCcc----------------------EEEeecCC-CceeEEecCCCCCCcceeEe
Q 001070 160 VCYGLKGGNVRVLNLNTATR-SLLRGHTK----------------------IKIWEDSK-VAPLIILKPHGGQPVNSAQY 215 (1165)
Q Consensus 160 IayG~kdg~IRVwdi~t~ir-~llrGH~q----------------------VriWD~~~-g~pl~~lephdG~sV~SVaF 215 (1165)
|.|...-|.+.||||.|..- --|.||.. |||+|-+. +.|++..++|.|-.=..|+|
T Consensus 143 il~s~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w 222 (1012)
T KOG1445|consen 143 ILASGAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLW 222 (1012)
T ss_pred eEEeccCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeee
Confidence 44555579999999999433 36889987 99999885 67999999998877778999
Q ss_pred ecCCCCCCceEEEeecCC---CceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEE
Q 001070 216 LTAPNQAGHIILVTAGPL---NREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLF 292 (1165)
Q Consensus 216 l~aP~~~d~~~lvtsGsl---nrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilL 292 (1165)
+ +.|..||+.|-. -|++++||. +.| ..-+.||+|.++. =++-=.+|||+++|+|
T Consensus 223 ~-----Gn~~rlisTGF~~~R~reV~~~Dt---r~f--------~~p~~tleld~st-------GvLiPl~DpDt~llfL 279 (1012)
T KOG1445|consen 223 A-----GNWERLISTGFTTKRIREVRAYDT---RKF--------GAPVHTLELDSST-------GVLIPLYDPDTRLLFL 279 (1012)
T ss_pred c-----cchhhhhhcccchhhheeeeeeec---ccc--------CCcceeEEeeccc-------ceEeeeecCCCceEEE
Confidence 7 666668887754 378999996 333 2446788875544 1334468999999999
Q ss_pred eccCCCcEEEEEeecCCCccccccccccc-cccccceeeeeeccCC-------CCcc-----------eEEEEEeehhhh
Q 001070 293 ANAKKNAIYSVHLGYGNNSAATRIDYIAE-FTVTMPVLSFTGTIDP-------PSEH-----------IIKLYCVQTQAI 353 (1165)
Q Consensus 293 an~~r~aIYalhl~~g~~~~~~r~dyiae-F~v~~PILSft~~~d~-------~ge~-----------~vq~yCvQtqAI 353 (1165)
|.---+.||.+++-. |--|+.+ |.++-+=--..++--+ |||. +=-+|-|=.++.
T Consensus 280 aGKG~~~l~~lE~~d-------~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksy 352 (1012)
T KOG1445|consen 280 AGKGTNKLFMLEMQD-------RQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSY 352 (1012)
T ss_pred ecCCcceEEEEEecC-------CCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhh
Confidence 999999999999874 3334443 2222221112221111 4553 234577888888
Q ss_pred hhhccccc
Q 001070 354 QQYSLNLF 361 (1165)
Q Consensus 354 Qqy~l~~~ 361 (1165)
-.+|-|+.
T Consensus 353 rdFH~DLf 360 (1012)
T KOG1445|consen 353 RDFHSDLF 360 (1012)
T ss_pred hhhhhhhC
Confidence 88888875
No 124
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=97.52 E-value=0.00015 Score=84.53 Aligned_cols=95 Identities=23% Similarity=0.356 Sum_probs=71.8
Q ss_pred EeeecCceEEEeecCCcEEEEeCcc----------hhhHhhcCCcc------------------------EEEeecCCCc
Q 001070 152 QIAVNKHYVCYGLKGGNVRVLNLNT----------ATRSLLRGHTK------------------------IKIWEDSKVA 197 (1165)
Q Consensus 152 ~IAVn~~yIayG~kdg~IRVwdi~t----------~ir~llrGH~q------------------------VriWD~~~g~ 197 (1165)
.|.-||+||.+|.+||.|+||++.. .-++.|.+|+- +|+||+..|.
T Consensus 130 ~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~ 209 (476)
T KOG0646|consen 130 KFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV 209 (476)
T ss_pred EEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce
Confidence 3667999999999999999999864 33457888876 9999987763
Q ss_pred e---------------------------------------------------------eEEecCCCC-CCcceeEeecCC
Q 001070 198 P---------------------------------------------------------LIILKPHGG-QPVNSAQYLTAP 219 (1165)
Q Consensus 198 p---------------------------------------------------------l~~lephdG-~sV~SVaFl~aP 219 (1165)
. +..+.+|.| ..|.+++..
T Consensus 210 LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais--- 286 (476)
T KOG0646|consen 210 LLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS--- 286 (476)
T ss_pred eeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEe---
Confidence 1 233444443 377777774
Q ss_pred CCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEe
Q 001070 220 NQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLD 264 (1165)
Q Consensus 220 ~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe 264 (1165)
.|+- |+.||+-|..+.+||..+. .|++|+.
T Consensus 287 --~Dgt-lLlSGd~dg~VcvWdi~S~------------Q~iRtl~ 316 (476)
T KOG0646|consen 287 --TDGT-LLLSGDEDGKVCVWDIYSK------------QCIRTLQ 316 (476)
T ss_pred --cCcc-EEEeeCCCCCEEEEecchH------------HHHHHHh
Confidence 4555 5558999999999998554 8999988
No 125
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.52 E-value=0.00029 Score=88.47 Aligned_cols=121 Identities=18% Similarity=0.260 Sum_probs=86.7
Q ss_pred cCceEEEee--cCCcEEEEeCcchhhHhhcCCccEEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCC
Q 001070 156 NKHYVCYGL--KGGNVRVLNLNTATRSLLRGHTKIKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPL 233 (1165)
Q Consensus 156 n~~yIayG~--kdg~IRVwdi~t~ir~llrGH~qVriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGsl 233 (1165)
||+-+|||. -||.||||++..-.+... -||..--.+|-...-|+| +|++|-| +|||.. +++|+-
T Consensus 24 dg~~~aTgGq~~d~~~~iW~~~~vl~~~~-------~~~~~l~k~l~~m~~h~~-sv~CVR~--S~dG~~----lAsGSD 89 (942)
T KOG0973|consen 24 DGVKFATGGQVLDGGIVIWSQDPVLDEKE-------EKNENLPKHLCTMDDHDG-SVNCVRF--SPDGSY----LASGSD 89 (942)
T ss_pred CceeEecCCccccccceeeccccccchhh-------hhhcccchhheeeccccC-ceeEEEE--CCCCCe----EeeccC
Confidence 588889999 799999999998554422 234332234667777887 9999999 466544 558999
Q ss_pred CceEEEeEccC-cCCCCCCCC-----CCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCC
Q 001070 234 NREVKLWASAS-EEGWSLPTH-----AESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKN 298 (1165)
Q Consensus 234 nrtIKLW~~a~-~~~~~~~~~-----~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~ 298 (1165)
||-|-||+.+. +.||+-.+. .|.|+|..+|++|+ .=+.-|+.+|+..|++.--..+.
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~--------~DV~Dv~Wsp~~~~lvS~s~Dns 152 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD--------SDVLDVNWSPDDSLLVSVSLDNS 152 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCC--------CccceeccCCCccEEEEecccce
Confidence 99999999984 445555442 25799999999744 44556777887777766655543
No 126
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=97.51 E-value=0.00031 Score=82.54 Aligned_cols=124 Identities=15% Similarity=0.322 Sum_probs=90.0
Q ss_pred CceEEEeecCCcEEEEeCcchhhH-hhcCCcc------------------------------------------------
Q 001070 157 KHYVCYGLKGGNVRVLNLNTATRS-LLRGHTK------------------------------------------------ 187 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~t~ir~-llrGH~q------------------------------------------------ 187 (1165)
-.|||.|.-.|.++|||....+++ -|+||..
T Consensus 91 S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll 170 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLL 170 (673)
T ss_pred ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEe
Confidence 489999999999999999984444 8899987
Q ss_pred ------------------EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCC
Q 001070 188 ------------------IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWS 249 (1165)
Q Consensus 188 ------------------VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~ 249 (1165)
|-+||++...|..-|.--.--+-.-|+| .|...- |+++-..|+.|-|||....
T Consensus 171 ~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicf--spsne~---l~vsVG~Dkki~~yD~~s~---- 241 (673)
T KOG4378|consen 171 RYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICF--SPSNEA---LLVSVGYDKKINIYDIRSQ---- 241 (673)
T ss_pred ecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCccee--cCCccc---eEEEecccceEEEeecccc----
Confidence 8899999888866664322347778999 466655 6667779999999998544
Q ss_pred CCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEeec
Q 001070 250 LPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGY 307 (1165)
Q Consensus 250 ~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~ 307 (1165)
+-+.+|.. +.-|..|++.++|-+|...+ .|--||+--+.-
T Consensus 242 --------~s~~~l~y---------~~Plstvaf~~~G~~L~aG~-s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 242 --------ASTDRLTY---------SHPLSTVAFSECGTYLCAGN-SKGELIAYDMRS 281 (673)
T ss_pred --------cccceeee---------cCCcceeeecCCceEEEeec-CCceEEEEeccc
Confidence 44555654 35566788888776665555 455666655543
No 127
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.50 E-value=0.00043 Score=80.60 Aligned_cols=128 Identities=20% Similarity=0.345 Sum_probs=89.8
Q ss_pred Cceee-cC----CceEEecccCCCCCCCCCCccccccc--------------ccCCCcccccccEeeec---CceEEEee
Q 001070 107 YGKRV-FG----DYVAYDVDAVEEGREPTQQLEVNPIT--------------KYGSDPELLIGRQIAVN---KHYVCYGL 164 (1165)
Q Consensus 107 ~Gr~l-~g----~~~~~dVd~~~~ge~~~pqlev~pIt--------------~Y~sd~~~~~GR~IAVn---~~yIayG~ 164 (1165)
+|-++ .| .-.|+|.|.+.+ ..|.+.+..+. -|-+|..+. ++-| .+.||+|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~---v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~----Ls~n~~~~nVLaSgs 263 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDA---VLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLA----LSWNRNFRNVLASGS 263 (463)
T ss_pred CcceEEEeccCceeEEeccccccc---cccceeechhhhhhhhhhcccccccccchHHHHH----HHhccccceeEEecC
Confidence 78888 77 445799999776 33655555321 111111111 1223 57899999
Q ss_pred cCCcEEEEeCcc-hhhHhhcCCcc--------------------------------------------------------
Q 001070 165 KGGNVRVLNLNT-ATRSLLRGHTK-------------------------------------------------------- 187 (1165)
Q Consensus 165 kdg~IRVwdi~t-~ir~llrGH~q-------------------------------------------------------- 187 (1165)
.|++|.+||.++ .-...+.-|++
T Consensus 264 aD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~ 343 (463)
T KOG0270|consen 264 ADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSEN 343 (463)
T ss_pred CCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCce
Confidence 999999999999 55557776776
Q ss_pred ----------EEEeecCC-CceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCC
Q 001070 188 ----------IKIWEDSK-VAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEG 247 (1165)
Q Consensus 188 ----------VriWD~~~-g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~ 247 (1165)
||-+|.|. |.|+-++..||| +|.++.| .+..|+ |+++|+.++.+|||++...++
T Consensus 344 ~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~--n~~~p~---~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 344 SFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSV--NIQTPG---LLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred eEEEecCCceEEeeecCCCCCceeEEEeccC-CcceEEe--cCCCCc---ceeeccccceEEEEeecCCCC
Confidence 55555554 467888888876 8999998 466666 777899999999999987754
No 128
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.48 E-value=0.00018 Score=83.93 Aligned_cols=134 Identities=19% Similarity=0.322 Sum_probs=97.9
Q ss_pred ccccCCCcccccccEeeecCceEEEeecCCcEEEEeCcc--hhhHhh-----------------cCCcc-----------
Q 001070 138 ITKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNT--ATRSLL-----------------RGHTK----------- 187 (1165)
Q Consensus 138 It~Y~sd~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t--~ir~ll-----------------rGH~q----------- 187 (1165)
|.+|+--.-.+.+=-+..|++|+.+++++|+|-=||+-+ ..|..+ ++|..
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 555655555555555677999999999999999999988 333322 16665
Q ss_pred -----------EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCC
Q 001070 188 -----------IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAES 256 (1165)
Q Consensus 188 -----------VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~ 256 (1165)
|-|||.+++.++..|.+|-| .|.+++|-..++. |. +++.||+||||.++--+
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~-~V~~L~fr~gt~~-----ly-s~s~Drsvkvw~~~~~s---------- 277 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRG-AVSSLAFRKGTSE-----LY-SASADRSVKVWSIDQLS---------- 277 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhccccccc-ceeeeeeecCccc-----ee-eeecCCceEEEehhHhH----------
Confidence 88999999999999999865 9999999644444 44 79999999999985542
Q ss_pred cceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCC
Q 001070 257 WKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKN 298 (1165)
Q Consensus 257 w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~ 298 (1165)
-+.||- ||.+-+.++.++...+.+-+.-..|-
T Consensus 278 --~vetly--------GHqd~v~~IdaL~reR~vtVGgrDrT 309 (479)
T KOG0299|consen 278 --YVETLY--------GHQDGVLGIDALSRERCVTVGGRDRT 309 (479)
T ss_pred --HHHHHh--------CCccceeeechhcccceEEeccccce
Confidence 223333 46676777777777777666644443
No 129
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=97.46 E-value=0.00088 Score=76.25 Aligned_cols=83 Identities=18% Similarity=0.334 Sum_probs=65.8
Q ss_pred CceEEEeecCCcEEEEeCcch---hhHhhcCCcc---------------------------EEEeecCCC-ceeEEecCC
Q 001070 157 KHYVCYGLKGGNVRVLNLNTA---TRSLLRGHTK---------------------------IKIWEDSKV-APLIILKPH 205 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~t~---ir~llrGH~q---------------------------VriWD~~~g-~pl~~leph 205 (1165)
+.-|-++..||.||+|||.++ -|....+|.. |.|||+|+- ++|..|.-.
T Consensus 84 ~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eS 163 (376)
T KOG1188|consen 84 PHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNES 163 (376)
T ss_pred CCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhh
Confidence 566778899999999999983 3336677773 999999985 457777533
Q ss_pred CCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccC
Q 001070 206 GGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASAS 244 (1165)
Q Consensus 206 dG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~ 244 (1165)
.-+-|.+|.| .|..|+ |+.+||.|.=|-|+|+..
T Consensus 164 H~DDVT~lrF--HP~~pn---lLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 164 HNDDVTQLRF--HPSDPN---LLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred ccCcceeEEe--cCCCCC---eEEeecccceEEeeecCC
Confidence 2458999999 798888 788999999999999743
No 130
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=97.45 E-value=0.0006 Score=78.79 Aligned_cols=160 Identities=18% Similarity=0.232 Sum_probs=104.2
Q ss_pred eeecCc-eEEEeecCCcEEEEeCcc----------hhhHhhcCCcc----------------------EEEeecCC----
Q 001070 153 IAVNKH-YVCYGLKGGNVRVLNLNT----------ATRSLLRGHTK----------------------IKIWEDSK---- 195 (1165)
Q Consensus 153 IAVn~~-yIayG~kdg~IRVwdi~t----------~ir~llrGH~q----------------------VriWD~~~---- 195 (1165)
+.=|.. +||+|.-|..||||=+++ ..-+.|.+|++ |-+|-...
T Consensus 21 fq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~ 100 (434)
T KOG1009|consen 21 FQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF 100 (434)
T ss_pred eccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc
Confidence 333444 999999999999998875 12347899999 66774330
Q ss_pred ---Cc---------eeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEE
Q 001070 196 ---VA---------PLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTL 263 (1165)
Q Consensus 196 ---g~---------pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTL 263 (1165)
.+ =..++++| ++-||-++|. +++.|++ +|+.|.++.|||+..+ .-.+++
T Consensus 101 ~~d~e~~~~ke~w~v~k~lr~h-~~diydL~Ws-----~d~~~l~-s~s~dns~~l~Dv~~G------------~l~~~~ 161 (434)
T KOG1009|consen 101 DADTEADLNKEKWVVKKVLRGH-RDDIYDLAWS-----PDSNFLV-SGSVDNSVRLWDVHAG------------QLLAIL 161 (434)
T ss_pred cccchhhhCccceEEEEEeccc-ccchhhhhcc-----CCCceee-eeeccceEEEEEeccc------------eeEeec
Confidence 10 14556666 5689999993 5556577 6999999999998444 666666
Q ss_pred eccCCCCCccccccEEEEEeecCCcEEEEeccCC-CcEEEEEeecCCCccccccccccccccccceeeeeeccCCCCcc-
Q 001070 264 DLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKK-NAIYSVHLGYGNNSAATRIDYIAEFTVTMPVLSFTGTIDPPSEH- 341 (1165)
Q Consensus 264 e~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r-~aIYalhl~~g~~~~~~r~dyiaeF~v~~PILSft~~~d~~ge~- 341 (1165)
. +|+-+++-|+.+|-+++|.-=...| .-+|-+-+. .+..|++. ..||+. -+-.||+
T Consensus 162 ~--------dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~-------~~~~~~~~--~~m~~~-----~~~~~e~~ 219 (434)
T KOG1009|consen 162 D--------DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLK-------QVIKRHGL--DIMPAK-----AFNEREGK 219 (434)
T ss_pred c--------ccccccceeecchhhhhhhhhccCcccceeeeeee-------eeeeeeee--eEeeec-----ccCCCCcc
Confidence 6 5788888999999999887655555 333333333 24445443 222221 1123444
Q ss_pred eEEEEEeehhhh
Q 001070 342 IIKLYCVQTQAI 353 (1165)
Q Consensus 342 ~vq~yCvQtqAI 353 (1165)
.++|||=-|.=-
T Consensus 220 s~rLfhDeTlks 231 (434)
T KOG1009|consen 220 STRLFHDETLKS 231 (434)
T ss_pred eeeeeecCchhh
Confidence 688888666433
No 131
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.45 E-value=0.00022 Score=80.26 Aligned_cols=53 Identities=23% Similarity=0.344 Sum_probs=43.7
Q ss_pred EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCc
Q 001070 188 IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASE 245 (1165)
Q Consensus 188 VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~ 245 (1165)
|++||+.++.|+..|..|. ..|-+++|++.|++ -+|+ ++|.|..||+||....
T Consensus 231 i~~~D~ds~~~~~~~~AH~-~RVK~i~~~~~~~~---~~lv-TaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 231 ISLKDTDSDTPLTEFLAHE-NRVKDIASYTNPEH---EYLV-TASSDGFIKVWDIDME 283 (362)
T ss_pred EEEeccCCCccceeeecch-hheeeeEEEecCCc---eEEE-EeccCceEEEEEcccc
Confidence 8899988888899998884 58999999888777 3355 6889999999998654
No 132
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.44 E-value=0.00073 Score=81.85 Aligned_cols=101 Identities=18% Similarity=0.228 Sum_probs=71.1
Q ss_pred EEeecCCCceEEEeEccCcCCCCCCCCCCCc----ceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEE
Q 001070 227 LVTAGPLNREVKLWASASEEGWSLPTHAESW----KCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYS 302 (1165)
Q Consensus 227 lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w----~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYa 302 (1165)
++.+++.++.+-+|--.+..=|.+.++.-.+ .-+--|.. .++.++...++.|+|+||..+-..+--||-
T Consensus 337 ~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~-------k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~ 409 (691)
T KOG2048|consen 337 RVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFT-------KEKENISCAAISPDGNLIAISTVSRTKIYR 409 (691)
T ss_pred eeecCccceEEEEeccccccceeccCcccccccChhhheeeec-------CCccceeeeccCCCCCEEEEeeccceEEEE
Confidence 4667788888888865555556555542211 11111111 245678788999999999999999999997
Q ss_pred EEeecCCCccccccccccccccccceeeeeeccC
Q 001070 303 VHLGYGNNSAATRIDYIAEFTVTMPVLSFTGTID 336 (1165)
Q Consensus 303 lhl~~g~~~~~~r~dyiaeF~v~~PILSft~~~d 336 (1165)
|..+. +=-..+.|-.-.|++..--++||++.+
T Consensus 410 L~~~~--~vk~~~v~~~~~~~~~a~~i~ftid~~ 441 (691)
T KOG2048|consen 410 LQPDP--NVKVINVDDVPLALLDASAISFTIDKN 441 (691)
T ss_pred eccCc--ceeEEEeccchhhhccceeeEEEecCc
Confidence 77654 445678888888888888999998653
No 133
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.41 E-value=0.0023 Score=71.54 Aligned_cols=132 Identities=11% Similarity=0.128 Sum_probs=82.9
Q ss_pred ecCceE-EEeecCCcEEEEeCcc-h-hh----H---hhcCCcc---------------------EEEeecCC--Cc--ee
Q 001070 155 VNKHYV-CYGLKGGNVRVLNLNT-A-TR----S---LLRGHTK---------------------IKIWEDSK--VA--PL 199 (1165)
Q Consensus 155 Vn~~yI-ayG~kdg~IRVwdi~t-~-ir----~---llrGH~q---------------------VriWD~~~--g~--pl 199 (1165)
-||+|| +....++.|+|||+++ . +. . +..|..- |++||... |. .+
T Consensus 135 p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 135 PDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECV 214 (330)
T ss_pred CCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEE
Confidence 357888 5677889999999986 1 11 0 1112111 89999873 32 23
Q ss_pred EEec--CCC--C-CCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccc
Q 001070 200 IILK--PHG--G-QPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVE 274 (1165)
Q Consensus 200 ~~le--phd--G-~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~ 274 (1165)
+.+. |.+ | .....++| .| ++++|.++...+++|.+|+.+...+ .++-++++...
T Consensus 215 ~~~~~~p~~~~~~~~~~~i~~--~p---dg~~lyv~~~~~~~I~v~~i~~~~~--------~~~~~~~~~~~-------- 273 (330)
T PRK11028 215 QTLDMMPADFSDTRWAADIHI--TP---DGRHLYACDRTASLISVFSVSEDGS--------VLSFEGHQPTE-------- 273 (330)
T ss_pred EEEecCCCcCCCCccceeEEE--CC---CCCEEEEecCCCCeEEEEEEeCCCC--------eEEEeEEEecc--------
Confidence 3332 221 1 13335777 45 4567888888899999999865422 23333333321
Q ss_pred cccEEEEEeecCCcEEEEeccCCCcEEEEEeecC
Q 001070 275 EAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGYG 308 (1165)
Q Consensus 275 ~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~g 308 (1165)
..-..+.++|+++||+++|...+.|-+++++..
T Consensus 274 -~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 274 -TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred -ccCCceEECCCCCEEEEEEccCCcEEEEEEcCC
Confidence 112245889999999999998999999998753
No 134
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0014 Score=74.02 Aligned_cols=122 Identities=16% Similarity=0.235 Sum_probs=88.5
Q ss_pred eecCceEEEeecCCcEEEEeCcc--hhhHhhcCCcc-----------------------EEEeecCCCceeEEecCCCCC
Q 001070 154 AVNKHYVCYGLKGGNVRVLNLNT--ATRSLLRGHTK-----------------------IKIWEDSKVAPLIILKPHGGQ 208 (1165)
Q Consensus 154 AVn~~yIayG~kdg~IRVwdi~t--~ir~llrGH~q-----------------------VriWD~~~g~pl~~lephdG~ 208 (1165)
+-||.++.+..+|..||++|..+ .+|.+=..|-. ||.-++.+-..|+.|.|| ++
T Consensus 23 s~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH-~~ 101 (311)
T KOG1446|consen 23 SDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGH-KK 101 (311)
T ss_pred cCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCC-Cc
Confidence 34699999999999999999998 33333222222 777777777779999998 57
Q ss_pred CcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCc
Q 001070 209 PVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAG 288 (1165)
Q Consensus 209 sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~ 288 (1165)
.|.++.- .|-+ | ...||++|+||+|||+-. .+|.--+...+-. -+++||+|=
T Consensus 102 ~V~sL~~--sP~~-d---~FlS~S~D~tvrLWDlR~------------~~cqg~l~~~~~p----------i~AfDp~GL 153 (311)
T KOG1446|consen 102 RVNSLSV--SPKD-D---TFLSSSLDKTVRLWDLRV------------KKCQGLLNLSGRP----------IAAFDPEGL 153 (311)
T ss_pred eEEEEEe--cCCC-C---eEEecccCCeEEeeEecC------------CCCceEEecCCCc----------ceeECCCCc
Confidence 9999988 4544 4 455899999999999943 4898888863322 247788887
Q ss_pred EEEEeccC-CCcEEEEE
Q 001070 289 LLLFANAK-KNAIYSVH 304 (1165)
Q Consensus 289 ~ilLan~~-r~aIYalh 304 (1165)
+..+++-. +=-||-+.
T Consensus 154 ifA~~~~~~~IkLyD~R 170 (311)
T KOG1446|consen 154 IFALANGSELIKLYDLR 170 (311)
T ss_pred EEEEecCCCeEEEEEec
Confidence 77777766 44455554
No 135
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=97.36 E-value=0.00085 Score=74.52 Aligned_cols=79 Identities=22% Similarity=0.263 Sum_probs=57.5
Q ss_pred EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccC
Q 001070 188 IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKS 267 (1165)
Q Consensus 188 VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~ 267 (1165)
+.||=..+|.-|.++++|.| +|.|+.- .-+-+.||| |+.|.++||||+.++ +|+-++.+.+
T Consensus 34 ~~vw~s~nGerlGty~GHtG-avW~~Di-----d~~s~~liT-GSAD~t~kLWDv~tG------------k~la~~k~~~ 94 (327)
T KOG0643|consen 34 PTVWYSLNGERLGTYDGHTG-AVWCCDI-----DWDSKHLIT-GSADQTAKLWDVETG------------KQLATWKTNS 94 (327)
T ss_pred ceEEEecCCceeeeecCCCc-eEEEEEe-----cCCcceeee-ccccceeEEEEcCCC------------cEEEEeecCC
Confidence 45666666777888888877 7777766 133455775 999999999999554 9999999844
Q ss_pred CCCCccccccEEEEEeecCCcEEEEec
Q 001070 268 SAKPRVEEAFFNQVVVLSQAGLLLFAN 294 (1165)
Q Consensus 268 s~~~~~~~aff~sV~~~p~a~~ilLan 294 (1165)
. +-.|-.++++.++|.+-
T Consensus 95 ~---------Vk~~~F~~~gn~~l~~t 112 (327)
T KOG0643|consen 95 P---------VKRVDFSFGGNLILAST 112 (327)
T ss_pred e---------eEEEeeccCCcEEEEEe
Confidence 3 33566778888776553
No 136
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=97.36 E-value=0.00028 Score=84.88 Aligned_cols=104 Identities=23% Similarity=0.400 Sum_probs=71.9
Q ss_pred ccccccccCCCc--ccccccEe--eecC-ceEEEeecCCcEEEEeCcc-hhh---Hhhc---CCcc--------------
Q 001070 134 EVNPITKYGSDP--ELLIGRQI--AVNK-HYVCYGLKGGNVRVLNLNT-ATR---SLLR---GHTK-------------- 187 (1165)
Q Consensus 134 ev~pIt~Y~sd~--~~~~GR~I--AVn~-~yIayG~kdg~IRVwdi~t-~ir---~llr---GH~q-------------- 187 (1165)
...|||-|..+- .-++|-.+ +.|. +.|+-+.|||.|+++|... ..| .-|+ -|-.
T Consensus 36 gi~~~~s~~~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~l 115 (720)
T KOG0321|consen 36 GIAPITSYANDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLL 115 (720)
T ss_pred ccccccccccCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeE
Confidence 345666665432 11222232 3343 4445599999999999998 544 1122 2332
Q ss_pred --------EEEeecCCCceeEE--ecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEcc
Q 001070 188 --------IKIWEDSKVAPLII--LKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASA 243 (1165)
Q Consensus 188 --------VriWD~~~g~pl~~--lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a 243 (1165)
+|+||+..+.++.. +-+|.| +|-|+|| +|..++ ++..|.-|.+|+|||+-
T Consensus 116 VsasGDsT~r~Wdvk~s~l~G~~~~~GH~~-SvkS~cf--~~~n~~---vF~tGgRDg~illWD~R 175 (720)
T KOG0321|consen 116 VSASGDSTIRPWDVKTSRLVGGRLNLGHTG-SVKSECF--MPTNPA---VFCTGGRDGEILLWDCR 175 (720)
T ss_pred EEccCCceeeeeeeccceeecceeeccccc-ccchhhh--ccCCCc---ceeeccCCCcEEEEEEe
Confidence 99999998877555 888876 9999999 688777 66678899999999993
No 137
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.35 E-value=0.0005 Score=75.25 Aligned_cols=110 Identities=21% Similarity=0.275 Sum_probs=83.7
Q ss_pred cCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCCC--ceeEEecCCCCCCc
Q 001070 156 NKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSKV--APLIILKPHGGQPV 210 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~g--~pl~~lephdG~sV 210 (1165)
|..-+|.|.-|+.|-|||.+| ++-.-||||-. ||+||-|+. .|+++|.-. -+.|
T Consensus 70 Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea-~D~V 148 (307)
T KOG0316|consen 70 DNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEA-KDGV 148 (307)
T ss_pred cccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhh-cCce
Confidence 567789999999999999999 77778999987 999999875 589988654 2468
Q ss_pred ceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEE
Q 001070 211 NSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLL 290 (1165)
Q Consensus 211 ~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~i 290 (1165)
.||-- .+| .|.+||.|.+++-+|+--+ |+. + + .-..-+++|..+++++.+
T Consensus 149 ~Si~v------~~h--eIvaGS~DGtvRtydiR~G----------------~l~--s-D---y~g~pit~vs~s~d~nc~ 198 (307)
T KOG0316|consen 149 SSIDV------AEH--EIVAGSVDGTVRTYDIRKG----------------TLS--S-D---YFGHPITSVSFSKDGNCS 198 (307)
T ss_pred eEEEe------ccc--EEEeeccCCcEEEEEeecc----------------eee--h-h---hcCCcceeEEecCCCCEE
Confidence 88888 333 4668999999999998444 121 0 0 112346788889999988
Q ss_pred EEeccC
Q 001070 291 LFANAK 296 (1165)
Q Consensus 291 lLan~~ 296 (1165)
|.+...
T Consensus 199 La~~l~ 204 (307)
T KOG0316|consen 199 LASSLD 204 (307)
T ss_pred EEeecc
Confidence 877654
No 138
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=97.34 E-value=0.00045 Score=77.22 Aligned_cols=84 Identities=24% Similarity=0.366 Sum_probs=66.5
Q ss_pred ccccEeeecCceEEEeecCCcEEEEeCcc--hhhHhhcCCcc-----------------------EEEeecCC-CceeEE
Q 001070 148 LIGRQIAVNKHYVCYGLKGGNVRVLNLNT--ATRSLLRGHTK-----------------------IKIWEDSK-VAPLII 201 (1165)
Q Consensus 148 ~~GR~IAVn~~yIayG~kdg~IRVwdi~t--~ir~llrGH~q-----------------------VriWD~~~-g~pl~~ 201 (1165)
..|.|+|+ +.|++++-||..| ..-.+=+.|.| |||||.|+ -.||..
T Consensus 182 Hdgnqv~t--------t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~e 253 (370)
T KOG1007|consen 182 HDGNQVAT--------TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQE 253 (370)
T ss_pred CccceEEE--------eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccc
Confidence 45666664 3689999999998 44447778877 99999997 479999
Q ss_pred ecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCc
Q 001070 202 LKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASE 245 (1165)
Q Consensus 202 lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~ 245 (1165)
+.+| .|+|.+|-| . +.|--||-+|+.|-.+-||+..+-
T Consensus 254 l~~H-sHWvW~VRf--n---~~hdqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 254 LPGH-SHWVWAVRF--N---PEHDQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred cCCC-ceEEEEEEe--c---CccceEEEecCCCceeEEEecccc
Confidence 9999 599999999 3 444447778999999999997443
No 139
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.32 E-value=0.00048 Score=78.80 Aligned_cols=121 Identities=16% Similarity=0.284 Sum_probs=75.8
Q ss_pred EEEeecCCcEEEEeCcc-hhhHhhcCCcc--------------------EEEeecC------------------------
Q 001070 160 VCYGLKGGNVRVLNLNT-ATRSLLRGHTK--------------------IKIWEDS------------------------ 194 (1165)
Q Consensus 160 IayG~kdg~IRVwdi~t-~ir~llrGH~q--------------------VriWD~~------------------------ 194 (1165)
+++|+-||.|||||+.+ ....+|+-|.+ ||.|-+.
T Consensus 82 ~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~ 161 (433)
T KOG0268|consen 82 VASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSV 161 (433)
T ss_pred hhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccCCcceeeecccccccccccccccc
Confidence 57899999999999999 55569999996 6666411
Q ss_pred ---CCceeEEecCCCCC----------CcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEE
Q 001070 195 ---KVAPLIILKPHGGQ----------PVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQ 261 (1165)
Q Consensus 195 ---~g~pl~~lephdG~----------sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~Q 261 (1165)
.|.-+++|...--. .+.|+-| .|--.+ +|.++-.||.|.|+|+-... ..-+-++
T Consensus 162 FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkf--NpvETs---ILas~~sDrsIvLyD~R~~~--------Pl~KVi~ 228 (433)
T KOG0268|consen 162 FATCGEQIDIWDEQRDNPVSSMSWGADSISSVKF--NPVETS---ILASCASDRSIVLYDLRQAS--------PLKKVIL 228 (433)
T ss_pred ccccCceeeecccccCCccceeecCCCceeEEec--CCCcch---heeeeccCCceEEEecccCC--------ccceeee
Confidence 12235566554322 4555666 454444 77788899999999984431 1223333
Q ss_pred EEeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEeec
Q 001070 262 TLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGY 307 (1165)
Q Consensus 262 TLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~ 307 (1165)
|.. =|.++.+| -.|.+++.-.-..||..-.-|
T Consensus 229 ~mR-------------TN~IswnP-eafnF~~a~ED~nlY~~DmR~ 260 (433)
T KOG0268|consen 229 TMR-------------TNTICWNP-EAFNFVAANEDHNLYTYDMRN 260 (433)
T ss_pred ecc-------------ccceecCc-cccceeeccccccceehhhhh
Confidence 333 23566677 555555555556666544443
No 140
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0032 Score=71.09 Aligned_cols=196 Identities=19% Similarity=0.234 Sum_probs=113.6
Q ss_pred Cceee-c-C---CceEEecccCCCCCCCCCCcccccccccCCCcccccccEeeecCceEEEeec--CCcEEEEeCcc-hh
Q 001070 107 YGKRV-F-G---DYVAYDVDAVEEGREPTQQLEVNPITKYGSDPELLIGRQIAVNKHYVCYGLK--GGNVRVLNLNT-AT 178 (1165)
Q Consensus 107 ~Gr~l-~-g---~~~~~dVd~~~~ge~~~pqlev~pIt~Y~sd~~~~~GR~IAVn~~yIayG~k--dg~IRVwdi~t-~i 178 (1165)
.|-+| . - .-++||.-.++. +.--+--|||-+- +|=+- ..+-+.|+.. |..||.+++.+ ..
T Consensus 25 ~G~~litss~dDsl~LYd~~~g~~-------~~ti~skkyG~~~----~~Fth-~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 25 DGLLLITSSEDDSLRLYDSLSGKQ-------VKTINSKKYGVDL----ACFTH-HSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCCEEEEecCCCeEEEEEcCCCce-------eeEeecccccccE----EEEec-CCceEEEccCCCCCceEEEEeecCce
Confidence 57777 2 1 225688776544 3444555677665 44222 2333345554 99999999999 55
Q ss_pred hHhhcCCcc----------------------EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCce
Q 001070 179 RSLLRGHTK----------------------IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNRE 236 (1165)
Q Consensus 179 r~llrGH~q----------------------VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrt 236 (1165)
-.-|.||.+ ||.||.+.-.|...+.- ..-.-+|| .|.| .++++ |.....
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~---~~~pi~Af--Dp~G---LifA~-~~~~~~ 163 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL---SGRPIAAF--DPEG---LIFAL-ANGSEL 163 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec---CCCcceeE--CCCC---cEEEE-ecCCCe
Confidence 558999999 99999995443333321 12334677 3444 43333 433449
Q ss_pred EEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEeecCCCcccccc
Q 001070 237 VKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGYGNNSAATRI 316 (1165)
Q Consensus 237 IKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~g~~~~~~r~ 316 (1165)
|||+|+-.-.. ---+||..... ..+=++.+-.+|+|.+|||+... +.||.|----|.
T Consensus 164 IkLyD~Rs~dk----------gPF~tf~i~~~-----~~~ew~~l~FS~dGK~iLlsT~~-s~~~~lDAf~G~------- 220 (311)
T KOG1446|consen 164 IKLYDLRSFDK----------GPFTTFSITDN-----DEAEWTDLEFSPDGKSILLSTNA-SFIYLLDAFDGT------- 220 (311)
T ss_pred EEEEEecccCC----------CCceeEccCCC-----CccceeeeEEcCCCCEEEEEeCC-CcEEEEEccCCc-------
Confidence 99999833210 11245554322 23456788999999999998654 556665432222
Q ss_pred ccccccccc-----cceeeeeeccCC------CCcceEEEEEe
Q 001070 317 DYIAEFTVT-----MPVLSFTGTIDP------PSEHIIKLYCV 348 (1165)
Q Consensus 317 dyiaeF~v~-----~PILSft~~~d~------~ge~~vq~yCv 348 (1165)
++.-|..- .| |+.+-+.|+ .+.+-+++|-+
T Consensus 221 -~~~tfs~~~~~~~~~-~~a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 221 -VKSTFSGYPNAGNLP-LSATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred -EeeeEeeccCCCCcc-eeEEECCCCcEEEEecCCCcEEEEEc
Confidence 22222221 23 666667777 34466777765
No 141
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00055 Score=81.80 Aligned_cols=125 Identities=17% Similarity=0.176 Sum_probs=85.5
Q ss_pred ecCceEEEeecCCcEEEEeCcc--hhhHhhcCCcc--------------------EEEeecCCCceeEE-ecCCCCCCcc
Q 001070 155 VNKHYVCYGLKGGNVRVLNLNT--ATRSLLRGHTK--------------------IKIWEDSKVAPLII-LKPHGGQPVN 211 (1165)
Q Consensus 155 Vn~~yIayG~kdg~IRVwdi~t--~ir~llrGH~q--------------------VriWD~~~g~pl~~-lephdG~sV~ 211 (1165)
-+|.|||.|..+|.|.|||+.+ .+|.+.-+|.. |.+||++....+.. +..| .+.|.
T Consensus 227 ~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H-~qeVC 305 (484)
T KOG0305|consen 227 PDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGH-RQEVC 305 (484)
T ss_pred CCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcc-cceee
Confidence 3699999999999999999998 55555444877 88999998765444 8877 57999
Q ss_pred eeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEE
Q 001070 212 SAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLL 291 (1165)
Q Consensus 212 SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~il 291 (1165)
-+.|. +|++ .++||.+|..+.|||.... .-.++|. .|++=+--++..|-.+=|
T Consensus 306 gLkws-----~d~~-~lASGgnDN~~~Iwd~~~~------------~p~~~~~--------~H~aAVKA~awcP~q~~l- 358 (484)
T KOG0305|consen 306 GLKWS-----PDGN-QLASGGNDNVVFIWDGLSP------------EPKFTFT--------EHTAAVKALAWCPWQSGL- 358 (484)
T ss_pred eeEEC-----CCCC-eeccCCCccceEeccCCCc------------cccEEEe--------ccceeeeEeeeCCCccCc-
Confidence 99994 5556 3558999999999998222 3345555 245544445555654432
Q ss_pred EeccCCCcEEEEEeec
Q 001070 292 FANAKKNAIYSVHLGY 307 (1165)
Q Consensus 292 Lan~~r~aIYalhl~~ 307 (1165)
||-.-.-+-|++|+--
T Consensus 359 LAsGGGs~D~~i~fwn 374 (484)
T KOG0305|consen 359 LATGGGSADRCIKFWN 374 (484)
T ss_pred eEEcCCCcccEEEEEE
Confidence 3334444455555543
No 142
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=97.29 E-value=0.0005 Score=80.92 Aligned_cols=125 Identities=18% Similarity=0.302 Sum_probs=82.5
Q ss_pred eeecCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCCCc------------
Q 001070 153 IAVNKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSKVA------------ 197 (1165)
Q Consensus 153 IAVn~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~g~------------ 197 (1165)
|..|.|..+....||+|+|||+.+ .+-..|.||+. ||-||.+.|.
T Consensus 517 ~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIf 596 (705)
T KOG0639|consen 517 ISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIF 596 (705)
T ss_pred cCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhhe
Confidence 566778888889999999999998 66678999999 9999998872
Q ss_pred -----e-------------eEEe---cCCC---C---CCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCC
Q 001070 198 -----P-------------LIIL---KPHG---G---QPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSL 250 (1165)
Q Consensus 198 -----p-------------l~~l---ephd---G---~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~ 250 (1165)
| ++++ .|+. + -.|-|+-|. ..+++.|+.| -|.-|-.|..--+..
T Consensus 597 SLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa-----~cGkwfvStG-kDnlLnawrtPyGas--- 667 (705)
T KOG0639|consen 597 SLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFA-----YCGKWFVSTG-KDNLLNAWRTPYGAS--- 667 (705)
T ss_pred ecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEec-----ccCceeeecC-chhhhhhccCccccc---
Confidence 1 2222 1110 0 167777772 3334455444 455555565422211
Q ss_pred CCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccC-CCcEEEEE
Q 001070 251 PTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAK-KNAIYSVH 304 (1165)
Q Consensus 251 ~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~-r~aIYalh 304 (1165)
- |.+ .|..-++++-++-+..|||-..-. +..||.|-
T Consensus 668 -----------i--Fqs-----kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 668 -----------I--FQS-----KESSSVLSCDISFDDKYIVTGSGDKKATVYEVI 704 (705)
T ss_pred -----------e--eec-----cccCcceeeeeccCceEEEecCCCcceEEEEEe
Confidence 1 222 234557788899999999987766 67788874
No 143
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.29 E-value=0.0029 Score=75.12 Aligned_cols=184 Identities=19% Similarity=0.318 Sum_probs=116.2
Q ss_pred cCCCcccccccE----eeec--CceEEEeecCCcEEEEeCcc---hhhH---h----------------------hcCCc
Q 001070 141 YGSDPELLIGRQ----IAVN--KHYVCYGLKGGNVRVLNLNT---ATRS---L----------------------LRGHT 186 (1165)
Q Consensus 141 Y~sd~~~~~GR~----IAVn--~~yIayG~kdg~IRVwdi~t---~ir~---l----------------------lrGH~ 186 (1165)
|.-|..+..|-+ ++|| |..+++|.-|..|+.||.+. ..|+ | +.||.
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 445666677776 4554 99999999999999999884 4443 1 23444
Q ss_pred c-------------------------------------------------------EEEeecCCC-ceeEEecCC--CCC
Q 001070 187 K-------------------------------------------------------IKIWEDSKV-APLIILKPH--GGQ 208 (1165)
Q Consensus 187 q-------------------------------------------------------VriWD~~~g-~pl~~leph--dG~ 208 (1165)
| +||||+.+- ..++++++- .|.
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 4 999998753 346666654 454
Q ss_pred --CcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecC
Q 001070 209 --PVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQ 286 (1165)
Q Consensus 209 --sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~ 286 (1165)
+|.+-+| .|+++ +|++|.+|..|.+|+. ++|.+ ..-.|+.--.. +. .=+.+|+++++
T Consensus 317 Rv~~tsC~~--nrdg~----~iAagc~DGSIQ~W~~---~~~~v----~p~~~vk~AH~-------~g-~~Itsi~FS~d 375 (641)
T KOG0772|consen 317 RVPVTSCAW--NRDGK----LIAAGCLDGSIQIWDK---GSRTV----RPVMKVKDAHL-------PG-QDITSISFSYD 375 (641)
T ss_pred ccCceeeec--CCCcc----hhhhcccCCceeeeec---CCccc----ccceEeeeccC-------CC-CceeEEEeccc
Confidence 8999999 56654 4889999999999997 22311 11233332221 01 13457888999
Q ss_pred CcEEEEeccCCCcEEEEEeecCCCccccccccccccccccce------eeeeeccCC--CCcceEEEE
Q 001070 287 AGLLLFANAKKNAIYSVHLGYGNNSAATRIDYIAEFTVTMPV------LSFTGTIDP--PSEHIIKLY 346 (1165)
Q Consensus 287 a~~ilLan~~r~aIYalhl~~g~~~~~~r~dyiaeF~v~~PI------LSft~~~d~--~ge~~vq~y 346 (1165)
|++| |+----+++-+--|..-..+...+.+-.+.|.-+-=+ |.|||++-+ .+++.+..|
T Consensus 376 g~~L-lSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~ 442 (641)
T KOG0772|consen 376 GNYL-LSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFF 442 (641)
T ss_pred cchh-hhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEE
Confidence 8875 4545556666666665555555555555555544433 457888765 455644444
No 144
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.28 E-value=0.00037 Score=85.29 Aligned_cols=114 Identities=12% Similarity=0.259 Sum_probs=87.5
Q ss_pred cCceEEEeecCCcEEEEeCcchhhH----hhcCCcc-----------------------EEEeecCCCceeEEecCCCCC
Q 001070 156 NKHYVCYGLKGGNVRVLNLNTATRS----LLRGHTK-----------------------IKIWEDSKVAPLIILKPHGGQ 208 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t~ir~----llrGH~q-----------------------VriWD~~~g~pl~~lephdG~ 208 (1165)
+..||||.+-+|.|-|||++..+|. .|.-|+- ||+||.+.---...+.. +-+
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~-nSE 177 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS-NSE 177 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc-cch
Confidence 3679999999999999999984433 7888887 99999997666677775 467
Q ss_pred CcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCc
Q 001070 209 PVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAG 288 (1165)
Q Consensus 209 sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~ 288 (1165)
+|..|.|. |.-++ -.+++.-+..|++||+--.. +|..-|. .|..+++=+-.+|...
T Consensus 178 SiRDV~fs--p~~~~---~F~s~~dsG~lqlWDlRqp~-----------r~~~k~~--------AH~GpV~c~nwhPnr~ 233 (839)
T KOG0269|consen 178 SIRDVKFS--PGYGN---KFASIHDSGYLQLWDLRQPD-----------RCEKKLT--------AHNGPVLCLNWHPNRE 233 (839)
T ss_pred hhhceeec--cCCCc---eEEEecCCceEEEeeccCch-----------hHHHHhh--------cccCceEEEeecCCCc
Confidence 99999995 43333 56689999999999994442 5555555 5778888888899777
Q ss_pred EEEEec
Q 001070 289 LLLFAN 294 (1165)
Q Consensus 289 ~ilLan 294 (1165)
||--.-
T Consensus 234 ~lATGG 239 (839)
T KOG0269|consen 234 WLATGG 239 (839)
T ss_pred eeeecC
Confidence 765443
No 145
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=97.24 E-value=0.0037 Score=65.63 Aligned_cols=124 Identities=23% Similarity=0.392 Sum_probs=88.1
Q ss_pred cCc-eEEE-eecCCcEEEEeCcc--hhhHhhcCCcc-----------------------EEEeecCCCceeEEecCCCCC
Q 001070 156 NKH-YVCY-GLKGGNVRVLNLNT--ATRSLLRGHTK-----------------------IKIWEDSKVAPLIILKPHGGQ 208 (1165)
Q Consensus 156 n~~-yIay-G~kdg~IRVwdi~t--~ir~llrGH~q-----------------------VriWD~~~g~pl~~lephdG~ 208 (1165)
++. +++. +..|+.|++||+.+ .....+.+|.. +++||...+.++..+..|+ .
T Consensus 121 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 199 (466)
T COG2319 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT-D 199 (466)
T ss_pred CcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCC-C
Confidence 555 4444 44499999999996 66667888876 9999999888899998874 5
Q ss_pred CcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEE-EEeccCCCCCcccccc-EEEEEeecC
Q 001070 209 PVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQ-TLDLKSSAKPRVEEAF-FNQVVVLSQ 286 (1165)
Q Consensus 209 sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~Q-TLe~~~s~~~~~~~af-f~sV~~~p~ 286 (1165)
.|.+++|. |+++ +++++++.|.+|++|+.. ...|.. ++.+ |... ++ .+.|+
T Consensus 200 ~v~~~~~~--~~~~---~~~~~~~~d~~i~~wd~~------------~~~~~~~~~~~--------~~~~~~~--~~~~~ 252 (466)
T COG2319 200 PVSSLAFS--PDGG---LLIASGSSDGTIRLWDLS------------TGKLLRSTLSG--------HSDSVVS--SFSPD 252 (466)
T ss_pred ceEEEEEc--CCcc---eEEEEecCCCcEEEEECC------------CCcEEeeecCC--------CCcceeE--eECCC
Confidence 99999995 6665 467678999999999764 236666 4554 3333 22 56777
Q ss_pred CcEEEEeccCCCcEEEEEeecC
Q 001070 287 AGLLLFANAKKNAIYSVHLGYG 308 (1165)
Q Consensus 287 a~~ilLan~~r~aIYalhl~~g 308 (1165)
+.+++ +......++...+...
T Consensus 253 ~~~~~-~~~~d~~~~~~~~~~~ 273 (466)
T COG2319 253 GSLLA-SGSSDGTIRLWDLRSS 273 (466)
T ss_pred CCEEE-EecCCCcEEEeeecCC
Confidence 74444 5566666777766643
No 146
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=97.21 E-value=0.00045 Score=76.54 Aligned_cols=48 Identities=27% Similarity=0.571 Sum_probs=41.6
Q ss_pred EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEc
Q 001070 188 IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWAS 242 (1165)
Q Consensus 188 VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~ 242 (1165)
|||+..+++.||.+|+=|. .-|++||| .|+. . |+++|+-|.+|-||++
T Consensus 275 iRVyswrtl~pLAVLkyHs-agvn~vAf--spd~-~---lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 275 IRVYSWRTLNPLAVLKYHS-AGVNAVAF--SPDC-E---LMAAASKDARISLWKL 322 (323)
T ss_pred EEEEEeccCCchhhhhhhh-cceeEEEe--CCCC-c---hhhhccCCceEEeeec
Confidence 8899999999999999996 47999999 4652 1 6889999999999986
No 147
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=97.21 E-value=0.0024 Score=72.38 Aligned_cols=138 Identities=11% Similarity=0.181 Sum_probs=80.7
Q ss_pred ccEeeecCceEEEeecCCcEEEEeCcc----h---hhH-hhcCCcc-EEEeecCCC--------ceeEEec---CCCCC-
Q 001070 150 GRQIAVNKHYVCYGLKGGNVRVLNLNT----A---TRS-LLRGHTK-IKIWEDSKV--------APLIILK---PHGGQ- 208 (1165)
Q Consensus 150 GR~IAVn~~yIayG~kdg~IRVwdi~t----~---ir~-llrGH~q-VriWD~~~g--------~pl~~le---phdG~- 208 (1165)
|=-++-|||||||.+-||.|||||..- . +|. +=-||-. |+|=++.+. --|.++. -.||.
T Consensus 91 ~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~ 170 (420)
T KOG2096|consen 91 DVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSG 170 (420)
T ss_pred eeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCC
Confidence 334777999999999999999999885 1 222 2223433 444443322 1111111 00221
Q ss_pred C-------------cceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCcccc
Q 001070 209 P-------------VNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEE 275 (1165)
Q Consensus 209 s-------------V~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~ 275 (1165)
+ +.+|--.+---....+|+. ++++|.+|-||++- +.-+|++.-.-+.
T Consensus 171 ~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~im-sas~dt~i~lw~lk-------------Gq~L~~idtnq~~------ 230 (420)
T KOG2096|consen 171 SHHFVHIDNLEFERKHQVDIINIGIAGNAKYIM-SASLDTKICLWDLK-------------GQLLQSIDTNQSS------ 230 (420)
T ss_pred CcccccccccccchhcccceEEEeecCCceEEE-EecCCCcEEEEecC-------------Cceeeeecccccc------
Confidence 1 1111111100012345444 79999999999983 3677777742211
Q ss_pred ccEEEEEeecCCcEEEEeccCCCcEEEEEeecCCC
Q 001070 276 AFFNQVVVLSQAGLLLFANAKKNAIYSVHLGYGNN 310 (1165)
Q Consensus 276 aff~sV~~~p~a~~ilLan~~r~aIYalhl~~g~~ 310 (1165)
.+ ..+++|+|+||..+.-+ +-+.+.++-|+.+
T Consensus 231 n~--~aavSP~GRFia~~gFT-pDVkVwE~~f~kd 262 (420)
T KOG2096|consen 231 NY--DAAVSPDGRFIAVSGFT-PDVKVWEPIFTKD 262 (420)
T ss_pred cc--ceeeCCCCcEEEEecCC-CCceEEEEEeccC
Confidence 11 45789999998877554 7788999999888
No 148
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=97.20 E-value=0.00082 Score=76.21 Aligned_cols=83 Identities=14% Similarity=0.229 Sum_probs=73.1
Q ss_pred EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccC
Q 001070 188 IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKS 267 (1165)
Q Consensus 188 VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~ 267 (1165)
|||-|..++...-.+.+| |++|+-+-| .|+.+. ||.+||-|++||||+..+. .|+--|-|.
T Consensus 117 IrVid~~~~~~~~~~~gh-G~sINeik~--~p~~~q---lvls~SkD~svRlwnI~~~------------~Cv~VfGG~- 177 (385)
T KOG1034|consen 117 IRVIDVVSGQCSKNYRGH-GGSINEIKF--HPDRPQ---LVLSASKDHSVRLWNIQTD------------VCVAVFGGV- 177 (385)
T ss_pred EEEEecchhhhccceecc-Cccchhhhc--CCCCCc---EEEEecCCceEEEEeccCC------------eEEEEeccc-
Confidence 999999999999999999 889999999 587777 8889999999999999666 999888762
Q ss_pred CCCCccccccEEEEEeecCCcEEEEe
Q 001070 268 SAKPRVEEAFFNQVVVLSQAGLLLFA 293 (1165)
Q Consensus 268 s~~~~~~~aff~sV~~~p~a~~ilLa 293 (1165)
+ ||.+-+|+|-.++++.+|+=.
T Consensus 178 --e--gHrdeVLSvD~~~~gd~i~Sc 199 (385)
T KOG1034|consen 178 --E--GHRDEVLSVDFSLDGDRIASC 199 (385)
T ss_pred --c--cccCcEEEEEEcCCCCeeecc
Confidence 2 799999999999999976544
No 149
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.0012 Score=83.57 Aligned_cols=168 Identities=19% Similarity=0.263 Sum_probs=119.0
Q ss_pred cCCceEEecccCCCCCCCCCCcccccccccCCCcccccccEeeec-CceEEEeecCCcEEEEeCcc-hhhHhhc------
Q 001070 112 FGDYVAYDVDAVEEGREPTQQLEVNPITKYGSDPELLIGRQIAVN-KHYVCYGLKGGNVRVLNLNT-ATRSLLR------ 183 (1165)
Q Consensus 112 ~g~~~~~dVd~~~~ge~~~pqlev~pIt~Y~sd~~~~~GR~IAVn-~~yIayG~kdg~IRVwdi~t-~ir~llr------ 183 (1165)
.|.-+.||++.-+.|+.- .-|.-|....+-+.|.-+-.. |..||.|+.||.|-|||++. ..-..+-
T Consensus 89 dG~I~ly~p~~~~~~~~~------~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~ 162 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASE------EVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPS 162 (1049)
T ss_pred CCceEEecchhhccCcch------HHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcc
Confidence 456677998886444443 346677777878888333333 67999999999999999996 3222221
Q ss_pred -----------------CCcc--EEEeecCCCceeEEecCCCCC-CcceeEeecCCCCCCceEEEeecC-CCceEEEeEc
Q 001070 184 -----------------GHTK--IKIWEDSKVAPLIILKPHGGQ-PVNSAQYLTAPNQAGHIILVTAGP-LNREVKLWAS 242 (1165)
Q Consensus 184 -----------------GH~q--VriWD~~~g~pl~~lephdG~-sV~SVaFl~aP~~~d~~~lvtsGs-lnrtIKLW~~ 242 (1165)
||.. +-|||+++-.|+-.+.-|-|. -+.+|+| .|++.. +.++++++ .+-.|+|||+
T Consensus 163 eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~W--hP~~aT-ql~~As~dd~~PviqlWDl 239 (1049)
T KOG0307|consen 163 EIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAW--HPDHAT-QLLVASGDDSAPVIQLWDL 239 (1049)
T ss_pred cceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeee--CCCCce-eeeeecCCCCCceeEeecc
Confidence 1111 789999998887777655453 5889999 788876 44565554 4568999997
Q ss_pred cCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEeec
Q 001070 243 ASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGY 307 (1165)
Q Consensus 243 a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~ 307 (1165)
--. -.-.++|+ +|+.=++++...++..-+||+..+-+-||+--.+-
T Consensus 240 R~a-----------ssP~k~~~--------~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 240 RFA-----------SSPLKILE--------GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred ccc-----------CCchhhhc--------ccccceeeeccCCCCchhhhcccCCCCeeEecCCC
Confidence 222 12345565 46777778888899989999999999999986654
No 150
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.12 E-value=0.0019 Score=72.88 Aligned_cols=118 Identities=24% Similarity=0.372 Sum_probs=82.4
Q ss_pred CceEEecccCCCCCCCCCCcccccccccCCCcccccccEeeecCceEEEeecCCcEEEEeCcchhhH--hhcCCcc----
Q 001070 114 DYVAYDVDAVEEGREPTQQLEVNPITKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNTATRS--LLRGHTK---- 187 (1165)
Q Consensus 114 ~~~~~dVd~~~~ge~~~pqlev~pIt~Y~sd~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t~ir~--llrGH~q---- 187 (1165)
-+.+||||++++ |.++|-..+|---+-. -.+-+.++|.++|-+.|+||..-+|.+ .|.||+.
T Consensus 295 TAnlwDVEtge~---------v~~LtGHd~ELtHcst---HptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS 362 (481)
T KOG0300|consen 295 TANLWDVETGEV---------VNILTGHDSELTHCST---HPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS 362 (481)
T ss_pred cceeeeeccCce---------eccccCcchhcccccc---CCcceEEEEeccCceeEeccchhhcceeeeecccccceeE
Confidence 467899999765 3344443333211111 113345579999999999999987766 8999998
Q ss_pred -----------------EEEeecCC-CceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCC
Q 001070 188 -----------------IKIWEDSK-VAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWS 249 (1165)
Q Consensus 188 -----------------VriWD~~~-g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~ 249 (1165)
|||||.++ ..||.+++.. -+++.|+-. .++. +|+=---||.|+|+|+.+-+=.-
T Consensus 363 ~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtd--S~~NRvavs-----~g~~-iIAiPhDNRqvRlfDlnG~RlaR 434 (481)
T KOG0300|consen 363 VVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTD--SPANRVAVS-----KGHP-IIAIPHDNRQVRLFDLNGNRLAR 434 (481)
T ss_pred EEEecCCceeecCCCceEEEeeeccccCcceeeecC--CccceeEee-----cCCc-eEEeccCCceEEEEecCCCcccc
Confidence 99999987 5688888743 489999985 5554 33335579999999997765333
Q ss_pred CC
Q 001070 250 LP 251 (1165)
Q Consensus 250 ~~ 251 (1165)
+|
T Consensus 435 lP 436 (481)
T KOG0300|consen 435 LP 436 (481)
T ss_pred CC
Confidence 34
No 151
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=97.12 E-value=0.00059 Score=82.86 Aligned_cols=85 Identities=14% Similarity=0.246 Sum_probs=72.8
Q ss_pred eeec--CceEEEeecCCcEEEEeCcc-hhhHhhcC---Ccc----------------------EEEeecCCCceeEEecC
Q 001070 153 IAVN--KHYVCYGLKGGNVRVLNLNT-ATRSLLRG---HTK----------------------IKIWEDSKVAPLIILKP 204 (1165)
Q Consensus 153 IAVn--~~yIayG~kdg~IRVwdi~t-~ir~llrG---H~q----------------------VriWD~~~g~pl~~lep 204 (1165)
.+|| -||+++|--|++|||+||.+ .+..+|+| |+. +-|+|.-+|.++.+.-+
T Consensus 602 m~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~G 681 (1080)
T KOG1408|consen 602 MAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTG 681 (1080)
T ss_pred eeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcC
Confidence 4565 69999999999999999999 88888876 433 66888888989999999
Q ss_pred CCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccC
Q 001070 205 HGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASAS 244 (1165)
Q Consensus 205 hdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~ 244 (1165)
| ++.|.-|-|+ +|-++|| |.+.|..|-+|.+..
T Consensus 682 H-sE~VTG~kF~-----nDCkHlI-SvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 682 H-SEAVTGVKFL-----NDCKHLI-SVSGDGCIFVWKLPL 714 (1080)
T ss_pred c-chheeeeeec-----ccchhhe-eecCCceEEEEECch
Confidence 9 7999999997 6667788 699999999999844
No 152
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=96.95 E-value=0.0019 Score=70.33 Aligned_cols=118 Identities=19% Similarity=0.279 Sum_probs=85.3
Q ss_pred Cceee----cCCceEEecccCCCCCCCCCCcccccccccCCCcccccccEeee---cCceEEEeecCCcEEEEeCcc--h
Q 001070 107 YGKRV----FGDYVAYDVDAVEEGREPTQQLEVNPITKYGSDPELLIGRQIAV---NKHYVCYGLKGGNVRVLNLNT--A 177 (1165)
Q Consensus 107 ~Gr~l----~g~~~~~dVd~~~~ge~~~pqlev~pIt~Y~sd~~~~~GR~IAV---n~~yIayG~kdg~IRVwdi~t--~ 177 (1165)
+|+.| .|+--+|--|-+ ..| + .--|. -..|.-+|. ||..+++|+.|++||.||+.- -
T Consensus 151 ~~~il~s~gagdc~iy~tdc~---~g~-~------~~a~s----ghtghilalyswn~~m~~sgsqdktirfwdlrv~~~ 216 (350)
T KOG0641|consen 151 GGAILASAGAGDCKIYITDCG---RGQ-G------FHALS----GHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSC 216 (350)
T ss_pred CceEEEecCCCcceEEEeecC---CCC-c------ceeec----CCcccEEEEEEecCcEEEccCCCceEEEEeeeccce
Confidence 68887 347777877763 224 1 11121 122444443 788999999999999999862 1
Q ss_pred h--------------------------hHhhcCCcc--EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEe
Q 001070 178 T--------------------------RSLLRGHTK--IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVT 229 (1165)
Q Consensus 178 i--------------------------r~llrGH~q--VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvt 229 (1165)
+ |.|-.||.. -.+||++.|.++++|-||. -.|.+|-|. |+-.||+|
T Consensus 217 v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phs-adir~vrfs-----p~a~yllt 290 (350)
T KOG0641|consen 217 VNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHS-ADIRCVRFS-----PGAHYLLT 290 (350)
T ss_pred eeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCc-cceeEEEeC-----CCceEEEE
Confidence 1 334555655 7899999999999999995 589999994 55566886
Q ss_pred ecCCCceEEEeEccCc
Q 001070 230 AGPLNREVKLWASASE 245 (1165)
Q Consensus 230 sGslnrtIKLW~~a~~ 245 (1165)
+|.|..|||=|+.+.
T Consensus 291 -~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 291 -CSYDMKIKLTDLQGD 305 (350)
T ss_pred -ecccceEEEeecccc
Confidence 999999999998654
No 153
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.0045 Score=71.95 Aligned_cols=133 Identities=16% Similarity=0.178 Sum_probs=83.4
Q ss_pred cccEe--ee--cCceEEEeecCCcEEEEeCcc--hhhHhhcCCcc--------------------EEEeecCCCceeEEe
Q 001070 149 IGRQI--AV--NKHYVCYGLKGGNVRVLNLNT--ATRSLLRGHTK--------------------IKIWEDSKVAPLIIL 202 (1165)
Q Consensus 149 ~GR~I--AV--n~~yIayG~kdg~IRVwdi~t--~ir~llrGH~q--------------------VriWD~~~g~pl~~l 202 (1165)
.|++. |. ||.-|++|..||.+|||+--+ .+-....-|.- -||||+++|.++.++
T Consensus 144 ~g~~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 144 FGQQKVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARK 223 (398)
T ss_pred cCcceEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhc
Confidence 45553 33 589999999999999999433 33333333332 789999999999999
Q ss_pred cCCCCCCcce-eEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEE
Q 001070 203 KPHGGQPVNS-AQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQV 281 (1165)
Q Consensus 203 ephdG~sV~S-VaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV 281 (1165)
.|.+++..++ .-|...+.+ +..+|.+.-.-.+-|.+|++..-.+ . .-.+.... . .-..-..+.
T Consensus 224 t~~~k~~~~~~cRF~~d~~~-~~l~laa~~~~~~~v~~~~~~~w~~--------~-~~l~~~~~---~---~~~~siSsl 287 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQ-ETLRLAASQFPGGGVRLCDISLWSG--------S-NFLRLRKK---I---KRFKSISSL 287 (398)
T ss_pred CCcccchhhhhceecccCCC-ceEEEEEecCCCCceeEEEeeeecc--------c-cccchhhh---h---hccCcceeE
Confidence 9998875555 456544555 4444666555566666677633211 0 11111110 0 001234577
Q ss_pred EeecCCcEEEEeccCC
Q 001070 282 VVLSQAGLLLFANAKK 297 (1165)
Q Consensus 282 ~~~p~a~~ilLan~~r 297 (1165)
+++.+|.|+.|+-...
T Consensus 288 ~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 288 AVSDDGKFLALGTMDG 303 (398)
T ss_pred EEcCCCcEEEEeccCC
Confidence 8999999999887644
No 154
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=96.84 E-value=0.014 Score=61.31 Aligned_cols=120 Identities=22% Similarity=0.401 Sum_probs=84.8
Q ss_pred cCceEEEeecCCcEEEEeCcch--hhHhhcC-Cc-------------------------cEEEeecCC-CceeEEecCCC
Q 001070 156 NKHYVCYGLKGGNVRVLNLNTA--TRSLLRG-HT-------------------------KIKIWEDSK-VAPLIILKPHG 206 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t~--ir~llrG-H~-------------------------qVriWD~~~-g~pl~~lephd 206 (1165)
++.+++.+.-|+.|++||.... ....+.+ |. .|++||..+ +..+..+..|.
T Consensus 76 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 155 (466)
T COG2319 76 DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHS 155 (466)
T ss_pred CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCc
Confidence 4666666667788888887763 2333333 21 088999987 77788888884
Q ss_pred CCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecC
Q 001070 207 GQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQ 286 (1165)
Q Consensus 207 G~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~ 286 (1165)
..|+.++| .|++. +++.++..+..+++|+... +.++.++.+ |...+..+...|+
T Consensus 156 -~~v~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~--------~~~~v~~~~~~~~ 209 (466)
T COG2319 156 -ESVTSLAF--SPDGK---LLASGSSLDGTIKLWDLRT------------GKPLSTLAG--------HTDPVSSLAFSPD 209 (466)
T ss_pred -ccEEEEEE--CCCCC---EEEecCCCCCceEEEEcCC------------CceEEeecc--------CCCceEEEEEcCC
Confidence 58999999 45554 4554433599999999844 478888885 6777778888899
Q ss_pred CcEEEEeccCCCcEE
Q 001070 287 AGLLLFANAKKNAIY 301 (1165)
Q Consensus 287 a~~ilLan~~r~aIY 301 (1165)
+.+++++......|+
T Consensus 210 ~~~~~~~~~~d~~i~ 224 (466)
T COG2319 210 GGLLIASGSSDGTIR 224 (466)
T ss_pred cceEEEEecCCCcEE
Confidence 987777755556665
No 155
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=96.82 E-value=0.0023 Score=72.20 Aligned_cols=116 Identities=25% Similarity=0.363 Sum_probs=82.6
Q ss_pred CCCceee----cCCceEEecccCCCCCCCCCCcccccccccCCCcccccccEeeecCceEEEeecCCcEEEEeCcchhhH
Q 001070 105 PIYGKRV----FGDYVAYDVDAVEEGREPTQQLEVNPITKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNTATRS 180 (1165)
Q Consensus 105 p~~Gr~l----~g~~~~~dVd~~~~ge~~~pqlev~pIt~Y~sd~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t~ir~ 180 (1165)
|.++..| -|.-.+|||+...- .+ +|..+..+.. -=-.|.+-+++|.-||.||.+|+++.--.
T Consensus 23 ~~~~~LLvssWDgslrlYdv~~~~l------~~------~~~~~~plL~--c~F~d~~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 23 PSSSDLLVSSWDGSLRLYDVPANSL------KL------KFKHGAPLLD--CAFADESTIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred CcCCcEEEEeccCcEEEEeccchhh------hh------heecCCceee--eeccCCceEEEeccCceEEEEEecCCcce
Confidence 6678887 46888999998521 12 2222221111 11124677789999999999999996666
Q ss_pred hhcCCcc----------------------EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEE
Q 001070 181 LLRGHTK----------------------IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVK 238 (1165)
Q Consensus 181 llrGH~q----------------------VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIK 238 (1165)
.+-.|.. ||+||.+..+++..++ .|+.||++.- .+.+ ||+ |-.||.+-
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy~~~v------~g~~-LvV-g~~~r~v~ 158 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVYCMDV------SGNR-LVV-GTSDRKVL 158 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--cCceEEEEec------cCCE-EEE-eecCceEE
Confidence 6666766 9999999877777776 4679999988 4545 565 66999999
Q ss_pred EeEccC
Q 001070 239 LWASAS 244 (1165)
Q Consensus 239 LW~~a~ 244 (1165)
+|||-.
T Consensus 159 iyDLRn 164 (323)
T KOG1036|consen 159 IYDLRN 164 (323)
T ss_pred EEEccc
Confidence 999843
No 156
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=0.00091 Score=80.20 Aligned_cols=37 Identities=24% Similarity=0.521 Sum_probs=30.9
Q ss_pred cEeeec--CceEEEeecCCcEEEEeCcc--hhhH-hhcCCcc
Q 001070 151 RQIAVN--KHYVCYGLKGGNVRVLNLNT--ATRS-LLRGHTK 187 (1165)
Q Consensus 151 R~IAVn--~~yIayG~kdg~IRVwdi~t--~ir~-llrGH~q 187 (1165)
|.|+|+ |.||++|.+||.+|||-|.| -+|. +|-+|-.
T Consensus 404 r~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~ 445 (733)
T KOG0650|consen 404 RSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIR 445 (733)
T ss_pred EEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeE
Confidence 558887 99999999999999999999 5555 6777665
No 157
>PRK01742 tolB translocation protein TolB; Provisional
Probab=96.76 E-value=0.018 Score=67.69 Aligned_cols=125 Identities=12% Similarity=0.207 Sum_probs=78.0
Q ss_pred eeecCceEEEeecC---CcEEEEeCcchh-h--HhhcCCcc----------------------EEEeecCCCceeEEecC
Q 001070 153 IAVNKHYVCYGLKG---GNVRVLNLNTAT-R--SLLRGHTK----------------------IKIWEDSKVAPLIILKP 204 (1165)
Q Consensus 153 IAVn~~yIayG~kd---g~IRVwdi~t~i-r--~llrGH~q----------------------VriWD~~~g~pl~~lep 204 (1165)
.+-||++|+|...+ .+|++||+.+.. + .-+.||.. |.+||..++. +.++..
T Consensus 211 wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~ 289 (429)
T PRK01742 211 WSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTS 289 (429)
T ss_pred EcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeecc
Confidence 56689999997643 479999998732 2 23566655 4445666555 566766
Q ss_pred CCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEee
Q 001070 205 HGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVL 284 (1165)
Q Consensus 205 hdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~ 284 (1165)
+.+ .+.+++| +||| +.|+.++.-+...+||+.....+ . ...+.+ ..+ ...++
T Consensus 290 ~~~-~~~~~~w--SpDG---~~i~f~s~~~g~~~I~~~~~~~~----------~-~~~l~~---------~~~--~~~~S 341 (429)
T PRK01742 290 GAG-NNTEPSW--SPDG---QSILFTSDRSGSPQVYRMSASGG----------G-ASLVGG---------RGY--SAQIS 341 (429)
T ss_pred CCC-CcCCEEE--CCCC---CEEEEEECCCCCceEEEEECCCC----------C-eEEecC---------CCC--CccCC
Confidence 544 5889999 4665 33554455567789998755422 1 122221 112 35679
Q ss_pred cCCcEEEEeccCCCcEEEEEeecC
Q 001070 285 SQAGLLLFANAKKNAIYSVHLGYG 308 (1165)
Q Consensus 285 p~a~~ilLan~~r~aIYalhl~~g 308 (1165)
|++++|+++.. ..||.+.+.-|
T Consensus 342 pDG~~ia~~~~--~~i~~~Dl~~g 363 (429)
T PRK01742 342 ADGKTLVMING--DNVVKQDLTSG 363 (429)
T ss_pred CCCCEEEEEcC--CCEEEEECCCC
Confidence 99999887754 56777665443
No 158
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=96.76 E-value=0.0068 Score=75.77 Aligned_cols=132 Identities=20% Similarity=0.336 Sum_probs=95.3
Q ss_pred ccEeeec--CceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCCCceeEEecC
Q 001070 150 GRQIAVN--KHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSKVAPLIILKP 204 (1165)
Q Consensus 150 GR~IAVn--~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~g~pl~~lep 204 (1165)
-|-.+|| |+|||-|+.|-.|+|+|... .+...||||+. |+|||.++|.....|..
T Consensus 99 ~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~ 178 (933)
T KOG1274|consen 99 IRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTG 178 (933)
T ss_pred ceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhccc
Confidence 4556675 77999999999999999998 88889999998 99999999977666654
Q ss_pred CC-------CCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCcccccc
Q 001070 205 HG-------GQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAF 277 (1165)
Q Consensus 205 hd-------G~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~af 277 (1165)
-+ -..+.-++| .|++.. +++ -+.+++||+++- .+|.-.-+|...... .-
T Consensus 179 v~k~n~~~~s~i~~~~aW--~Pk~g~--la~--~~~d~~Vkvy~r------------~~we~~f~Lr~~~~s------s~ 234 (933)
T KOG1274|consen 179 VDKDNEFILSRICTRLAW--HPKGGT--LAV--PPVDNTVKVYSR------------KGWELQFKLRDKLSS------SK 234 (933)
T ss_pred CCccccccccceeeeeee--cCCCCe--EEe--eccCCeEEEEcc------------CCceeheeecccccc------cc
Confidence 31 236778888 576544 334 679999999995 445666666653322 22
Q ss_pred EEEEEeecCCcEEEEeccCCCcEEEEEee
Q 001070 278 FNQVVVLSQAGLLLFANAKKNAIYSVHLG 306 (1165)
Q Consensus 278 f~sV~~~p~a~~ilLan~~r~aIYalhl~ 306 (1165)
|.-+..+|-|.||--+ ..++-|-+.-++
T Consensus 235 ~~~~~wsPnG~YiAAs-~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 235 FSDLQWSPNGKYIAAS-TLDGQILVWNVD 262 (933)
T ss_pred eEEEEEcCCCcEEeee-ccCCcEEEEecc
Confidence 7778899997776444 444555555444
No 159
>KOG4328 consensus WD40 protein [Function unknown]
Probab=96.76 E-value=0.0074 Score=70.99 Aligned_cols=123 Identities=24% Similarity=0.347 Sum_probs=79.9
Q ss_pred eecCCcEEEEeCcc--hhhHhhcCCcc-----------------------EEEeecCCC----ceeEEecCCCCCCccee
Q 001070 163 GLKGGNVRVLNLNT--ATRSLLRGHTK-----------------------IKIWEDSKV----APLIILKPHGGQPVNSA 213 (1165)
Q Consensus 163 G~kdg~IRVwdi~t--~ir~llrGH~q-----------------------VriWD~~~g----~pl~~lephdG~sV~SV 213 (1165)
|-.=|..-|||..+ .--..++=|++ +||||.|.- .|+-..-+| -++|.|+
T Consensus 297 ~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~H-rrsV~sA 375 (498)
T KOG4328|consen 297 GDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPH-RRSVNSA 375 (498)
T ss_pred eecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccc-cceeeee
Confidence 33446778899887 33447777777 899999863 244444456 4799999
Q ss_pred EeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEe
Q 001070 214 QYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFA 293 (1165)
Q Consensus 214 aFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLa 293 (1165)
.| +|.+.. ||| -++|.+|+|||..--..|..| .+.--|.....|--..| +.+-+|+-.+|+++
T Consensus 376 yF--SPs~gt---l~T-T~~D~~IRv~dss~~sa~~~p---------~~~I~Hn~~t~RwlT~f--KA~W~P~~~li~vg 438 (498)
T KOG4328|consen 376 YF--SPSGGT---LLT-TCQDNEIRVFDSSCISAKDEP---------LGTIPHNNRTGRWLTPF--KAAWDPDYNLIVVG 438 (498)
T ss_pred EE--cCCCCc---eEe-eccCCceEEeecccccccCCc---------cceeeccCcccccccch--hheeCCCccEEEEe
Confidence 99 688766 776 669999999998533334333 22211111111101122 66789999999999
Q ss_pred ccCCCcEEEEE
Q 001070 294 NAKKNAIYSVH 304 (1165)
Q Consensus 294 n~~r~aIYalh 304 (1165)
+..|. |=++|
T Consensus 439 ~~~r~-IDv~~ 448 (498)
T KOG4328|consen 439 RYPRP-IDVFD 448 (498)
T ss_pred ccCcc-eeEEc
Confidence 99987 54444
No 160
>PRK04922 tolB translocation protein TolB; Provisional
Probab=96.74 E-value=0.024 Score=66.63 Aligned_cols=128 Identities=16% Similarity=0.211 Sum_probs=75.9
Q ss_pred eeecCceEEEeec---CCcEEEEeCcchhhHh---hcCCcc----------------------EEEeecCCCceeEEecC
Q 001070 153 IAVNKHYVCYGLK---GGNVRVLNLNTATRSL---LRGHTK----------------------IKIWEDSKVAPLIILKP 204 (1165)
Q Consensus 153 IAVn~~yIayG~k---dg~IRVwdi~t~ir~l---lrGH~q----------------------VriWD~~~g~pl~~lep 204 (1165)
++-||++|+|... +.+|++||+++..+.. +.|+.. |++||..+|. +..+..
T Consensus 211 wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~-~~~lt~ 289 (433)
T PRK04922 211 WSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ-LTRLTN 289 (433)
T ss_pred CCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC-eEECcc
Confidence 4557888888763 4579999998733332 233332 7888888776 455655
Q ss_pred CCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEee
Q 001070 205 HGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVL 284 (1165)
Q Consensus 205 hdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~ 284 (1165)
+.+ .+++++| +||+ +.|+.+...+.+..||......| .+ +.+.+. ..+...++++
T Consensus 290 ~~~-~~~~~~~--spDG---~~l~f~sd~~g~~~iy~~dl~~g----------~~-~~lt~~--------g~~~~~~~~S 344 (433)
T PRK04922 290 HFG-IDTEPTW--APDG---KSIYFTSDRGGRPQIYRVAASGG----------SA-ERLTFQ--------GNYNARASVS 344 (433)
T ss_pred CCC-CccceEE--CCCC---CEEEEEECCCCCceEEEEECCCC----------Ce-EEeecC--------CCCccCEEEC
Confidence 533 4578899 4554 43554443344445555432211 21 233331 1233357889
Q ss_pred cCCcEEEEeccCC--CcEEEEEee
Q 001070 285 SQAGLLLFANAKK--NAIYSVHLG 306 (1165)
Q Consensus 285 p~a~~ilLan~~r--~aIYalhl~ 306 (1165)
|++++|+..+... ..||.+.+.
T Consensus 345 pDG~~Ia~~~~~~~~~~I~v~d~~ 368 (433)
T PRK04922 345 PDGKKIAMVHGSGGQYRIAVMDLS 368 (433)
T ss_pred CCCCEEEEEECCCCceeEEEEECC
Confidence 9999998876543 357887764
No 161
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=96.74 E-value=0.014 Score=64.65 Aligned_cols=95 Identities=12% Similarity=0.134 Sum_probs=59.4
Q ss_pred EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccC
Q 001070 188 IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKS 267 (1165)
Q Consensus 188 VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~ 267 (1165)
++-||.++|.--+++++|. +-|.+|+- +-.. ++ ++ +|+-|.|++|||+-+ .+|+++++--.
T Consensus 138 ~y~~dlE~G~i~r~~rGHt-DYvH~vv~--R~~~--~q-il-sG~EDGtvRvWd~kt------------~k~v~~ie~yk 198 (325)
T KOG0649|consen 138 IYQVDLEDGRIQREYRGHT-DYVHSVVG--RNAN--GQ-IL-SGAEDGTVRVWDTKT------------QKHVSMIEPYK 198 (325)
T ss_pred EEEEEecCCEEEEEEcCCc-ceeeeeee--cccC--cc-ee-ecCCCccEEEEeccc------------cceeEEecccc
Confidence 5566666666566666663 35555555 1111 23 34 699999999999944 49999999532
Q ss_pred CC-CCccc-cccEEEEEeecCCcEEEEeccCCCcEEEE
Q 001070 268 SA-KPRVE-EAFFNQVVVLSQAGLLLFANAKKNAIYSV 303 (1165)
Q Consensus 268 s~-~~~~~-~aff~sV~~~p~a~~ilLan~~r~aIYal 303 (1165)
.. -.|.| ...+ .+++=+..|+|-.--.+-+|+-+
T Consensus 199 ~~~~lRp~~g~wi--gala~~edWlvCGgGp~lslwhL 234 (325)
T KOG0649|consen 199 NPNLLRPDWGKWI--GALAVNEDWLVCGGGPKLSLWHL 234 (325)
T ss_pred ChhhcCcccCcee--EEEeccCceEEecCCCceeEEec
Confidence 22 11111 1221 46677788999888877777644
No 162
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.71 E-value=0.0079 Score=72.31 Aligned_cols=132 Identities=16% Similarity=0.226 Sum_probs=95.2
Q ss_pred hcCCccEEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEE
Q 001070 182 LRGHTKIKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQ 261 (1165)
Q Consensus 182 lrGH~qVriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~Q 261 (1165)
+.+-.||++||..++.-++.|++|. -+|.++.|.+.-+|--+.|++++.--.|-|-.|-..... +.+.-.|.-
T Consensus 160 ~~as~~ik~~~~~~kevv~~ftgh~-s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~------kkks~~~sl 232 (541)
T KOG4547|consen 160 LTASRQIKVLDIETKEVVITFTGHG-SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKED------KKKSLSCSL 232 (541)
T ss_pred EeccceEEEEEccCceEEEEecCCC-cceEEEEEEEeccccccceeeeccccccceeEEEEEccc------ccchhheee
Confidence 3333349999999998899999994 499999997666676678899999999999999875541 223456655
Q ss_pred EEeccCCCCCccccc-cEEEEEeecCCcEEEEeccCCCcEEEEEeecCCCccccccccccccccccceeeeeeccC
Q 001070 262 TLDLKSSAKPRVEEA-FFNQVVVLSQAGLLLFANAKKNAIYSVHLGYGNNSAATRIDYIAEFTVTMPVLSFTGTID 336 (1165)
Q Consensus 262 TLe~~~s~~~~~~~a-ff~sV~~~p~a~~ilLan~~r~aIYalhl~~g~~~~~~r~dyiaeF~v~~PILSft~~~d 336 (1165)
+.+ +.. ++.+....--..-++||...++.+|.+-... -.+|+.+-.++.++-.+....+
T Consensus 233 ~~~---------dipv~~ds~~~ed~~~~l~lAst~~~g~v~~~~~n-------l~~l~~~~~~kv~~~~~~~s~g 292 (541)
T KOG4547|consen 233 TVP---------DIPVTSDSGLLEDGTIPLVLASTLIPGIVHLKLSN-------LIILLHKKIVKVNGYNADSSKG 292 (541)
T ss_pred ccC---------CCCeEeccccccccccceEEeeeccCceeeecccc-------HHHHhcCccccccceeeecccc
Confidence 554 223 3333333333346899999999999776553 6778888888888887777665
No 163
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=96.69 E-value=0.011 Score=67.31 Aligned_cols=171 Identities=15% Similarity=0.175 Sum_probs=103.1
Q ss_pred eEEecccCCCCCCCCCCcccccccccCCC---cccccccEeeecCceEEEeecCCcEEEEeCcc-hhhH----hhcCCcc
Q 001070 116 VAYDVDAVEEGREPTQQLEVNPITKYGSD---PELLIGRQIAVNKHYVCYGLKGGNVRVLNLNT-ATRS----LLRGHTK 187 (1165)
Q Consensus 116 ~~~dVd~~~~ge~~~pqlev~pIt~Y~sd---~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t-~ir~----llrGH~q 187 (1165)
.+|-.+-+..|... +...+|....-+ -....-=.||-|++||++.+.|-.|-+||... .+.+ .+..|.-
T Consensus 158 ~vyk~~K~~dG~~~---~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGS---HHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDA 234 (420)
T ss_pred EEEEeeecccCCCC---cccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccce
Confidence 46888888887764 333333311111 11111223788999999999999999999885 2222 3334433
Q ss_pred -----------------EEEeec---CCCc-----eeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEc
Q 001070 188 -----------------IKIWED---SKVA-----PLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWAS 242 (1165)
Q Consensus 188 -----------------VriWD~---~~g~-----pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~ 242 (1165)
|+||++ ++|. -+-.|++|. -.|.+.||. |+..- +| +.|-|.++||||.
T Consensus 235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~-saV~~~aFs--n~S~r---~v-tvSkDG~wriwdt 307 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ-SAVLAAAFS--NSSTR---AV-TVSKDGKWRIWDT 307 (420)
T ss_pred eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch-hheeeeeeC--CCcce---eE-EEecCCcEEEeec
Confidence 999996 3453 255566652 389999994 44422 45 6999999999998
Q ss_pred cCcCCCCCCCCCCCcceEEEEe-ccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEee
Q 001070 243 ASEEGWSLPTHAESWKCTQTLD-LKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLG 306 (1165)
Q Consensus 243 a~~~~~~~~~~~~~w~C~QTLe-~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~ 306 (1165)
+-. +..+ +..+-+.++. +-..+ +..-. -..+.|.|..+-++.-.---+|+-+-+
T Consensus 308 dVr----Y~~~-qDpk~Lk~g~~pl~aa---g~~p~--RL~lsP~g~~lA~s~gs~l~~~~se~g 362 (420)
T KOG2096|consen 308 DVR----YEAG-QDPKILKEGSAPLHAA---GSEPV--RLELSPSGDSLAVSFGSDLKVFASEDG 362 (420)
T ss_pred cce----EecC-CCchHhhcCCcchhhc---CCCce--EEEeCCCCcEEEeecCCceEEEEcccC
Confidence 654 1111 1123333331 11111 11112 667889999988888877777776553
No 164
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=96.64 E-value=0.0022 Score=76.61 Aligned_cols=54 Identities=24% Similarity=0.220 Sum_probs=36.4
Q ss_pred CcccccccccCCCcccccccE--eeecCceEEEeecCCcEEEEeC---------c--chhhHhhcCCcc
Q 001070 132 QLEVNPITKYGSDPELLIGRQ--IAVNKHYVCYGLKGGNVRVLNL---------N--TATRSLLRGHTK 187 (1165)
Q Consensus 132 qlev~pIt~Y~sd~~~~~GR~--IAVn~~yIayG~kdg~IRVwdi---------~--t~ir~llrGH~q 187 (1165)
.+.|.|| |++......-=. +..||.++.+|.-||.||-||+ . +++...|-||+.
T Consensus 331 ~~~~epi--~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtd 397 (577)
T KOG0642|consen 331 EKDVEPI--LTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTD 397 (577)
T ss_pred ccceeee--EEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceecccc
Confidence 5677776 333221111112 3338999999999999999943 2 277889999999
No 165
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=96.62 E-value=0.0017 Score=81.64 Aligned_cols=82 Identities=20% Similarity=0.341 Sum_probs=60.4
Q ss_pred cCceEEEeecCCcEEEEeCcc--hhhHhhcCCcc--------------------EEEeecCCCceeEEecCCCCCCccee
Q 001070 156 NKHYVCYGLKGGNVRVLNLNT--ATRSLLRGHTK--------------------IKIWEDSKVAPLIILKPHGGQPVNSA 213 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t--~ir~llrGH~q--------------------VriWD~~~g~pl~~lephdG~sV~SV 213 (1165)
||+|||+-++|+.||+|+|++ ..+-..=||+- -|+|+.. |.-|++++.|-|..+.++
T Consensus 186 dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~ 264 (967)
T KOG0974|consen 186 DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKI 264 (967)
T ss_pred CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceEEEEEecc-cceehhhhhhhhcceeEE
Confidence 799999999999999999999 55557778985 4555333 333667777777788888
Q ss_pred EeecCCCCCCceEEEeecCCCceEEEeEccC
Q 001070 214 QYLTAPNQAGHIILVTAGPLNREVKLWASAS 244 (1165)
Q Consensus 214 aFl~aP~~~d~~~lvtsGslnrtIKLW~~a~ 244 (1165)
+. +.+.- .++| |-.|.+||+|++-.
T Consensus 265 ~~---~~~~~--~~vT-~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 265 AV---PIGVI--IKVT-GGNDSTLKLWDLNG 289 (967)
T ss_pred EE---cCCce--EEEe-eccCcchhhhhhhc
Confidence 87 22212 1454 66999999999844
No 166
>PRK01742 tolB translocation protein TolB; Provisional
Probab=96.57 E-value=0.016 Score=67.97 Aligned_cols=115 Identities=11% Similarity=0.182 Sum_probs=70.2
Q ss_pred cCCcEEEEeCcchhhHhhcCCcc-------------------------EEEeecCCCce--eEEecCCCCCCcceeEeec
Q 001070 165 KGGNVRVLNLNTATRSLLRGHTK-------------------------IKIWEDSKVAP--LIILKPHGGQPVNSAQYLT 217 (1165)
Q Consensus 165 kdg~IRVwdi~t~ir~llrGH~q-------------------------VriWD~~~g~p--l~~lephdG~sV~SVaFl~ 217 (1165)
+++.|+|||.+..-+..|.+|.. |++||..+|.+ +..++ |+ ..+++|
T Consensus 182 ~~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~---g~-~~~~~w-- 255 (429)
T PRK01742 182 QPYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR---GH-NGAPAF-- 255 (429)
T ss_pred ceEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC---Cc-cCceeE--
Confidence 35799999998732334455543 88999988753 43343 32 346889
Q ss_pred CCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEe-cc-
Q 001070 218 APNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFA-NA- 295 (1165)
Q Consensus 218 aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLa-n~- 295 (1165)
+||| +.|+.+.+.+..++||.++...+ .+ ..|.. +...+..+..+|++.+|+.+ +.
T Consensus 256 SPDG---~~La~~~~~~g~~~Iy~~d~~~~----------~~-~~lt~--------~~~~~~~~~wSpDG~~i~f~s~~~ 313 (429)
T PRK01742 256 SPDG---SRLAFASSKDGVLNIYVMGANGG----------TP-SQLTS--------GAGNNTEPSWSPDGQSILFTSDRS 313 (429)
T ss_pred CCCC---CEEEEEEecCCcEEEEEEECCCC----------Ce-Eeecc--------CCCCcCCEEECCCCCEEEEEECCC
Confidence 4554 44666666677777776543211 22 33442 22334567889999976654 43
Q ss_pred CCCcEEEEEeec
Q 001070 296 KKNAIYSVHLGY 307 (1165)
Q Consensus 296 ~r~aIYalhl~~ 307 (1165)
....||.+....
T Consensus 314 g~~~I~~~~~~~ 325 (429)
T PRK01742 314 GSPQVYRMSASG 325 (429)
T ss_pred CCceEEEEECCC
Confidence 356788877643
No 167
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=96.56 E-value=0.0024 Score=49.65 Aligned_cols=39 Identities=18% Similarity=0.441 Sum_probs=30.8
Q ss_pred CceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeE
Q 001070 196 VAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWA 241 (1165)
Q Consensus 196 g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~ 241 (1165)
|.++.+|++|. .+|++++|. |+ ..+++ +|+.|++|+|||
T Consensus 1 g~~~~~~~~h~-~~i~~i~~~--~~---~~~~~-s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHS-SSINSIAWS--PD---GNFLA-SGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSS-SSEEEEEEE--TT---SSEEE-EEETTSEEEEEE
T ss_pred CeEEEEEcCCC-CcEEEEEEe--cc---cccce-eeCCCCEEEEEC
Confidence 35789999994 599999994 55 34355 688999999997
No 168
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=96.55 E-value=0.013 Score=71.40 Aligned_cols=129 Identities=18% Similarity=0.238 Sum_probs=83.2
Q ss_pred Eeeec--CceEEEeecCCcEEEEeCcc-h----------------------hhHhhcCCcc--EEEeecCCCceeEEec-
Q 001070 152 QIAVN--KHYVCYGLKGGNVRVLNLNT-A----------------------TRSLLRGHTK--IKIWEDSKVAPLIILK- 203 (1165)
Q Consensus 152 ~IAVn--~~yIayG~kdg~IRVwdi~t-~----------------------ir~llrGH~q--VriWD~~~g~pl~~le- 203 (1165)
+||+| ++-|+-|.+||.+-.+++.. . ..++..|-.+ |||||+.+|.-+++.+
T Consensus 115 siai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~ 194 (691)
T KOG2048|consen 115 SIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITM 194 (691)
T ss_pred EEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeee
Confidence 46665 56666677777555555553 1 1112233333 8888888876555211
Q ss_pred CCC----CC--CcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCcccccc
Q 001070 204 PHG----GQ--PVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAF 277 (1165)
Q Consensus 204 phd----G~--sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~af 277 (1165)
..| |+ -|.||.|| .+. .|+||..-.+|+.||...+ .-+|.+. .|++=
T Consensus 195 ~~d~l~k~~~~iVWSv~~L-----rd~--tI~sgDS~G~V~FWd~~~g------------TLiqS~~--------~h~ad 247 (691)
T KOG2048|consen 195 QLDRLSKREPTIVWSVLFL-----RDS--TIASGDSAGTVTFWDSIFG------------TLIQSHS--------CHDAD 247 (691)
T ss_pred cccccccCCceEEEEEEEe-----ecC--cEEEecCCceEEEEcccCc------------chhhhhh--------hhhcc
Confidence 112 22 79999999 332 4778999999999998665 3333333 26777
Q ss_pred EEEEEeecCCcEEEEeccCCCcEEEEEeec
Q 001070 278 FNQVVVLSQAGLLLFANAKKNAIYSVHLGY 307 (1165)
Q Consensus 278 f~sV~~~p~a~~ilLan~~r~aIYalhl~~ 307 (1165)
++..+++++...++.|-+.+..|-.-.-..
T Consensus 248 Vl~Lav~~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 248 VLALAVADNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred eeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence 778889999999999999988775544443
No 169
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.53 E-value=0.0049 Score=69.93 Aligned_cols=84 Identities=18% Similarity=0.398 Sum_probs=65.8
Q ss_pred cCceEEE-eecCCcEEEEeCcchhh---HhhcCCcc-----------------------EEEeecCCCceeEEec-CCCC
Q 001070 156 NKHYVCY-GLKGGNVRVLNLNTATR---SLLRGHTK-----------------------IKIWEDSKVAPLIILK-PHGG 207 (1165)
Q Consensus 156 n~~yIay-G~kdg~IRVwdi~t~ir---~llrGH~q-----------------------VriWD~~~g~pl~~le-phdG 207 (1165)
+..+||+ |.+-|+|+|.|.+.... ..+..|.- |||||.++|.++..|+ +.|-
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~ 226 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR 226 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch
Confidence 4678888 88999999999998444 67788876 9999999999887776 3333
Q ss_pred CCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCc
Q 001070 208 QPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASE 245 (1165)
Q Consensus 208 ~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~ 245 (1165)
-.+|+++| +|+. . +++..|.-.||-|+.+...
T Consensus 227 A~iy~iaF--Sp~~---s-~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 227 ADIYCIAF--SPNS---S-WLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred heEEEEEe--CCCc---c-EEEEEcCCCeEEEEEeecC
Confidence 49999999 4555 4 3445788899999998654
No 170
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=96.52 E-value=0.021 Score=64.70 Aligned_cols=142 Identities=13% Similarity=0.238 Sum_probs=91.9
Q ss_pred ecCceEEEeecCCcEEEEeCcchhhHhhcCCcc---------------------EEEeecCCCceeEEecCCCCCCccee
Q 001070 155 VNKHYVCYGLKGGNVRVLNLNTATRSLLRGHTK---------------------IKIWEDSKVAPLIILKPHGGQPVNSA 213 (1165)
Q Consensus 155 Vn~~yIayG~kdg~IRVwdi~t~ir~llrGH~q---------------------VriWD~~~g~pl~~lephdG~sV~SV 213 (1165)
-.+.+|.-++=||..|++|..+..-.+.-.|+. ||.+|..+|. ...+-.| ++.|.++
T Consensus 23 ~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~-~~~igth-~~~i~ci 100 (323)
T KOG1036|consen 23 PSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGN-EDQIGTH-DEGIRCI 100 (323)
T ss_pred CcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCc-ceeeccC-CCceEEE
Confidence 446777778899999999999843333334544 9999988775 4455556 4699999
Q ss_pred EeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEE-
Q 001070 214 QYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLF- 292 (1165)
Q Consensus 214 aFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilL- 292 (1165)
.|+ +. .+ .|.+|+-|++||+||.-.. .|.-|++ . .+++| +.+-.+..|||
T Consensus 101 ~~~--~~-~~---~vIsgsWD~~ik~wD~R~~------------~~~~~~d----~----~kkVy---~~~v~g~~LvVg 151 (323)
T KOG1036|consen 101 EYS--YE-VG---CVISGSWDKTIKFWDPRNK------------VVVGTFD----Q----GKKVY---CMDVSGNRLVVG 151 (323)
T ss_pred Eee--cc-CC---eEEEcccCccEEEEecccc------------ccccccc----c----CceEE---EEeccCCEEEEe
Confidence 995 22 22 4668999999999995221 3444444 2 22332 34556666666
Q ss_pred eccCCCcEEEEEeecCCC-ccccccccccccccccc
Q 001070 293 ANAKKNAIYSVHLGYGNN-SAATRIDYIAEFTVTMP 327 (1165)
Q Consensus 293 an~~r~aIYalhl~~g~~-~~~~r~dyiaeF~v~~P 327 (1165)
..-++..||-+..-..+. -...+|.|.++=.-..|
T Consensus 152 ~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p 187 (323)
T KOG1036|consen 152 TSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP 187 (323)
T ss_pred ecCceEEEEEcccccchhhhccccceeEEEEEEEec
Confidence 666777888776543222 12456777777666666
No 171
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.49 E-value=0.012 Score=69.42 Aligned_cols=163 Identities=20% Similarity=0.199 Sum_probs=106.9
Q ss_pred CceEEecccCCCCCCCCCCcccccccccCCCcccccccEeeecCc-eEEEeecCCcEEEEeCcc-hh--hHhhcCCcc--
Q 001070 114 DYVAYDVDAVEEGREPTQQLEVNPITKYGSDPELLIGRQIAVNKH-YVCYGLKGGNVRVLNLNT-AT--RSLLRGHTK-- 187 (1165)
Q Consensus 114 ~~~~~dVd~~~~ge~~~pqlev~pIt~Y~sd~~~~~GR~IAVn~~-yIayG~kdg~IRVwdi~t-~i--r~llrGH~q-- 187 (1165)
--.+|.||....-..|.-+|+-.||-+- .|+.||+ -||++.+-+-.-+||+.+ .+ -+.+.||++
T Consensus 236 ~lrifqvDGk~N~~lqS~~l~~fPi~~a----------~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~ 305 (514)
T KOG2055|consen 236 TLRIFQVDGKVNPKLQSIHLEKFPIQKA----------EFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKS 305 (514)
T ss_pred cEEEEEecCccChhheeeeeccCcccee----------eecCCCceEEEecccceEEEEeeccccccccccCCCCcccch
Confidence 4568999987776666347777777542 1444555 556666666666666665 11 225555554
Q ss_pred --------------------------------------------------------------EEEeecCCCceeEEecCC
Q 001070 188 --------------------------------------------------------------IKIWEDSKVAPLIILKPH 205 (1165)
Q Consensus 188 --------------------------------------------------------------VriWD~~~g~pl~~leph 205 (1165)
|.|||++.-.++++|.--
T Consensus 306 ~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~ 385 (514)
T KOG2055|consen 306 MERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD 385 (514)
T ss_pred hheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec
Confidence 999999998889999843
Q ss_pred CCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeec
Q 001070 206 GGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLS 285 (1165)
Q Consensus 206 dG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p 285 (1165)
| +|+--.|..++++. +++.||.-.-+-|||..+...- ...+-+.|+.= =.-=+.++.+++
T Consensus 386 -G-~v~gts~~~S~ng~----ylA~GS~~GiVNIYd~~s~~~s------~~PkPik~~dN--------Ltt~Itsl~Fn~ 445 (514)
T KOG2055|consen 386 -G-SVHGTSLCISLNGS----YLATGSDSGIVNIYDGNSCFAS------TNPKPIKTVDN--------LTTAITSLQFNH 445 (514)
T ss_pred -C-ccceeeeeecCCCc----eEEeccCcceEEEeccchhhcc------CCCCchhhhhh--------hheeeeeeeeCc
Confidence 3 78888887777775 4667999999999996443110 11122222220 011244667899
Q ss_pred CCcEE-EEeccCCCcEEEEEee
Q 001070 286 QAGLL-LFANAKKNAIYSVHLG 306 (1165)
Q Consensus 286 ~a~~i-lLan~~r~aIYalhl~ 306 (1165)
+++++ +.+..++|++--||+-
T Consensus 446 d~qiLAiaS~~~knalrLVHvP 467 (514)
T KOG2055|consen 446 DAQILAIASRVKKNALRLVHVP 467 (514)
T ss_pred chhhhhhhhhccccceEEEecc
Confidence 99955 6678899999999986
No 172
>PRK05137 tolB translocation protein TolB; Provisional
Probab=96.45 E-value=0.039 Score=64.90 Aligned_cols=126 Identities=14% Similarity=0.160 Sum_probs=76.3
Q ss_pred eeecCceEEEeec---CCcEEEEeCcchhhHhhcCCcc-------------------------EEEeecCCCceeEEecC
Q 001070 153 IAVNKHYVCYGLK---GGNVRVLNLNTATRSLLRGHTK-------------------------IKIWEDSKVAPLIILKP 204 (1165)
Q Consensus 153 IAVn~~yIayG~k---dg~IRVwdi~t~ir~llrGH~q-------------------------VriWD~~~g~pl~~lep 204 (1165)
++-||++|+|... +.+|.+||+.+..+..+.++.. |.+||..++. +.++..
T Consensus 209 wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~Lt~ 287 (435)
T PRK05137 209 FSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT-TTRLTD 287 (435)
T ss_pred ECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc-eEEccC
Confidence 4568999999763 4789999998843333333332 7777887765 566665
Q ss_pred CCCCCcceeEeecCCCCCCceEEEeec--CCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEE
Q 001070 205 HGGQPVNSAQYLTAPNQAGHIILVTAG--PLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVV 282 (1165)
Q Consensus 205 hdG~sV~SVaFl~aP~~~d~~~lvtsG--slnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~ 282 (1165)
+.| .+.+..| +|||.. ++... ..+..|.+|+++++ ..+.+.+. ...+....
T Consensus 288 ~~~-~~~~~~~--spDG~~---i~f~s~~~g~~~Iy~~d~~g~-------------~~~~lt~~--------~~~~~~~~ 340 (435)
T PRK05137 288 SPA-IDTSPSY--SPDGSQ---IVFESDRSGSPQLYVMNADGS-------------NPRRISFG--------GGRYSTPV 340 (435)
T ss_pred CCC-ccCceeE--cCCCCE---EEEEECCCCCCeEEEEECCCC-------------CeEEeecC--------CCcccCeE
Confidence 544 5677888 466532 43322 22346777775432 22344431 12234567
Q ss_pred eecCCcEEEEeccCC--CcEEEEEee
Q 001070 283 VLSQAGLLLFANAKK--NAIYSVHLG 306 (1165)
Q Consensus 283 ~~p~a~~ilLan~~r--~aIYalhl~ 306 (1165)
.+|++++|++..... ..||.+-+.
T Consensus 341 ~SpdG~~ia~~~~~~~~~~i~~~d~~ 366 (435)
T PRK05137 341 WSPRGDLIAFTKQGGGQFSIGVMKPD 366 (435)
T ss_pred ECCCCCEEEEEEcCCCceEEEEEECC
Confidence 899999998876543 456666553
No 173
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.40 E-value=0.012 Score=74.72 Aligned_cols=127 Identities=16% Similarity=0.305 Sum_probs=81.4
Q ss_pred CceEEEeecCCcEEEEeCcc--hhhHhhcCCcc-----------------------EEEeecCCC---ceeEEecCCCC-
Q 001070 157 KHYVCYGLKGGNVRVLNLNT--ATRSLLRGHTK-----------------------IKIWEDSKV---APLIILKPHGG- 207 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~t--~ir~llrGH~q-----------------------VriWD~~~g---~pl~~lephdG- 207 (1165)
|+.+|+|- -+.|||||.++ .++.+-.|-+. ||+||.|.. +++.+|++|.-
T Consensus 1178 G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~ 1256 (1387)
T KOG1517|consen 1178 GHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV 1256 (1387)
T ss_pred CeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCc
Confidence 77788775 78999999987 44444444333 999999875 46999999954
Q ss_pred CCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCC
Q 001070 208 QPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQA 287 (1165)
Q Consensus 208 ~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a 287 (1165)
++|.-+.| .+.|-+ . || ||+.|..|++||+-.......+..-..|.. |. + .-...+++++
T Consensus 1257 ~~Iv~~sl--q~~G~~-e-lv-Sgs~~G~I~~~DlR~~~~e~~~~iv~~~~y-------------Gs-~-lTal~VH~ha 1316 (1387)
T KOG1517|consen 1257 EPIVHLSL--QRQGLG-E-LV-SGSQDGDIQLLDLRMSSKETFLTIVAHWEY-------------GS-A-LTALTVHEHA 1316 (1387)
T ss_pred ccceeEEe--ecCCCc-c-ee-eeccCCeEEEEecccCcccccceeeecccc-------------Cc-c-ceeeeeccCC
Confidence 25899998 444433 2 45 899999999999855311111111111111 10 0 1134467777
Q ss_pred cEEEEeccCCCcEEEEE
Q 001070 288 GLLLFANAKKNAIYSVH 304 (1165)
Q Consensus 288 ~~ilLan~~r~aIYalh 304 (1165)
.+|--+++..=+||-+-
T Consensus 1317 piiAsGs~q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1317 PIIASGSAQLIKIYSLS 1333 (1387)
T ss_pred CeeeecCcceEEEEecC
Confidence 77777777777777654
No 174
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=96.39 E-value=0.005 Score=71.34 Aligned_cols=76 Identities=22% Similarity=0.368 Sum_probs=55.2
Q ss_pred eeecCceEEEeecCCcEEEEeCc-c-hhhHhhcCCccEEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEee
Q 001070 153 IAVNKHYVCYGLKGGNVRVLNLN-T-ATRSLLRGHTKIKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTA 230 (1165)
Q Consensus 153 IAVn~~yIayG~kdg~IRVwdi~-t-~ir~llrGH~qVriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvts 230 (1165)
++-|++||+|.-||.+|||-.-. + .|.+.+-||+. =|..++-. +.+ ++-|
T Consensus 159 vS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~e---------------------FVS~isl~------~~~-~LlS 210 (390)
T KOG3914|consen 159 VSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKE---------------------FVSTISLT------DNY-LLLS 210 (390)
T ss_pred ecCCCCEEEEecCCceEEEEecCcccchhhhccccHh---------------------heeeeeec------cCc-eeee
Confidence 44489999999999999995554 4 88888888875 12222221 112 3448
Q ss_pred cCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCC
Q 001070 231 GPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSS 268 (1165)
Q Consensus 231 GslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s 268 (1165)
|+.|+||++||...+ +|+.|+.+.+-
T Consensus 211 ~sGD~tlr~Wd~~sg------------k~L~t~dl~s~ 236 (390)
T KOG3914|consen 211 GSGDKTLRLWDITSG------------KLLDTCDLSSL 236 (390)
T ss_pred cCCCCcEEEEecccC------------CcccccchhHh
Confidence 999999999998554 99999998553
No 175
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.37 E-value=0.21 Score=57.28 Aligned_cols=177 Identities=16% Similarity=0.258 Sum_probs=110.4
Q ss_pred eee--cCceEEEee-cCCcEEEEeCcc--hhhH---hhc-------------CCcc--------------------EEEe
Q 001070 153 IAV--NKHYVCYGL-KGGNVRVLNLNT--ATRS---LLR-------------GHTK--------------------IKIW 191 (1165)
Q Consensus 153 IAV--n~~yIayG~-kdg~IRVwdi~t--~ir~---llr-------------GH~q--------------------VriW 191 (1165)
|++ ||+||...- .+|.|-|++++. .+.. +++ .|-+ |++|
T Consensus 92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~ 171 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY 171 (345)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence 677 688887654 489999999985 2222 221 1111 8888
Q ss_pred ecCCCc----eeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccC
Q 001070 192 EDSKVA----PLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKS 267 (1165)
Q Consensus 192 D~~~g~----pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~ 267 (1165)
+..... +...+....|.-...++| .| +++++.+...++.+|-.+++.... ..|+.+|++..-+
T Consensus 172 ~~~~~~~~l~~~~~~~~~~G~GPRh~~f--~p---dg~~~Yv~~e~s~~v~v~~~~~~~--------g~~~~~~~~~~~~ 238 (345)
T PF10282_consen 172 DIDDDTGKLTPVDSIKVPPGSGPRHLAF--SP---DGKYAYVVNELSNTVSVFDYDPSD--------GSLTEIQTISTLP 238 (345)
T ss_dssp EE-TTS-TEEEEEEEECSTTSSEEEEEE---T---TSSEEEEEETTTTEEEEEEEETTT--------TEEEEEEEEESCE
T ss_pred EEeCCCceEEEeeccccccCCCCcEEEE--cC---CcCEEEEecCCCCcEEEEeecccC--------CceeEEEEeeecc
Confidence 776543 234444445677889999 45 445576679999999999986432 2567888877533
Q ss_pred CCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEeecCCCcccccccccccccc--ccceeeeeeccCC-------C
Q 001070 268 SAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGYGNNSAATRIDYIAEFTV--TMPVLSFTGTIDP-------P 338 (1165)
Q Consensus 268 s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~g~~~~~~r~dyiaeF~v--~~PILSft~~~d~-------~ 338 (1165)
... .....-..++++|+++||.++|...+.|-++.++.... ++..+..+.. .+| -.|....|+ .
T Consensus 239 ~~~--~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g----~l~~~~~~~~~G~~P-r~~~~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 239 EGF--TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG----TLTLVQTVPTGGKFP-RHFAFSPDGRYLYVANQ 311 (345)
T ss_dssp TTS--CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT----TEEEEEEEEESSSSE-EEEEE-TTSSEEEEEET
T ss_pred ccc--cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC----ceEEEEEEeCCCCCc-cEEEEeCCCCEEEEEec
Confidence 321 12236778999999999999999999999999953222 3333333332 123 334443333 2
Q ss_pred CcceEEEEEee
Q 001070 339 SEHIIKLYCVQ 349 (1165)
Q Consensus 339 ge~~vq~yCvQ 349 (1165)
+++.|.+|-+-
T Consensus 312 ~s~~v~vf~~d 322 (345)
T PF10282_consen 312 DSNTVSVFDID 322 (345)
T ss_dssp TTTEEEEEEEE
T ss_pred CCCeEEEEEEe
Confidence 45567777773
No 176
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=96.37 E-value=0.048 Score=57.95 Aligned_cols=117 Identities=13% Similarity=0.173 Sum_probs=78.0
Q ss_pred EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccC
Q 001070 188 IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKS 267 (1165)
Q Consensus 188 VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~ 267 (1165)
+..++.. +.++.+++-....+|.+++| .|+|. +|+|..|..++.|.|||. +|...+.|.
T Consensus 41 l~~~~~~-~~~~~~i~l~~~~~I~~~~W--sP~g~--~favi~g~~~~~v~lyd~---------------~~~~i~~~~- 99 (194)
T PF08662_consen 41 LFYLNEK-NIPVESIELKKEGPIHDVAW--SPNGN--EFAVIYGSMPAKVTLYDV---------------KGKKIFSFG- 99 (194)
T ss_pred EEEEecC-CCccceeeccCCCceEEEEE--CcCCC--EEEEEEccCCcccEEEcC---------------cccEeEeec-
Confidence 4444443 56777776543347999999 67763 466778999999999997 355555552
Q ss_pred CCCCccccccEEEEEeecCCcEEEEeccCCC--cEEEEEeecCCCccccccccccccccccceeeeeeccCCCCcceE
Q 001070 268 SAKPRVEEAFFNQVVVLSQAGLLLFANAKKN--AIYSVHLGYGNNSAATRIDYIAEFTVTMPVLSFTGTIDPPSEHII 343 (1165)
Q Consensus 268 s~~~~~~~aff~sV~~~p~a~~ilLan~~r~--aIYalhl~~g~~~~~~r~dyiaeF~v~~PILSft~~~d~~ge~~v 343 (1165)
..-.|.|..+|+|++|+++....- .|+...+. .+..|.++.-.. .-...++|||..++
T Consensus 100 -------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~--------~~~~i~~~~~~~---~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 100 -------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR--------KKKKISTFEHSD---ATDVEWSPDGRYLA 159 (194)
T ss_pred -------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECC--------CCEEeeccccCc---EEEEEEcCCCCEEE
Confidence 345678999999999999986532 36665444 344555554332 23556788887654
No 177
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=96.34 E-value=0.034 Score=63.83 Aligned_cols=127 Identities=12% Similarity=0.130 Sum_probs=74.4
Q ss_pred eeecCceEEEeecC---CcEEEEeCcch-hhHhh--cCCcc----------------------EEEeecCCCceeEEecC
Q 001070 153 IAVNKHYVCYGLKG---GNVRVLNLNTA-TRSLL--RGHTK----------------------IKIWEDSKVAPLIILKP 204 (1165)
Q Consensus 153 IAVn~~yIayG~kd---g~IRVwdi~t~-ir~ll--rGH~q----------------------VriWD~~~g~pl~~lep 204 (1165)
++.||++|+|+... ..|+|||+.+. .+.+. .|+.. |++||..++. ...+..
T Consensus 197 ~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~-~~~l~~ 275 (417)
T TIGR02800 197 WSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ-LTRLTN 275 (417)
T ss_pred CCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC-EEECCC
Confidence 66689999997654 48999999873 33221 22211 6777777664 455544
Q ss_pred CCCCCcceeEeecCCCCCCceEEEeecCCC--ceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEE
Q 001070 205 HGGQPVNSAQYLTAPNQAGHIILVTAGPLN--REVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVV 282 (1165)
Q Consensus 205 hdG~sV~SVaFl~aP~~~d~~~lvtsGsln--rtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~ 282 (1165)
+.+ .+.+..| .|++ +.|+.+...+ ..|-+|++.++ + .+.+.+ +......+.
T Consensus 276 ~~~-~~~~~~~--s~dg---~~l~~~s~~~g~~~iy~~d~~~~------------~-~~~l~~--------~~~~~~~~~ 328 (417)
T TIGR02800 276 GPG-IDTEPSW--SPDG---KSIAFTSDRGGSPQIYMMDADGG------------E-VRRLTF--------RGGYNASPS 328 (417)
T ss_pred CCC-CCCCEEE--CCCC---CEEEEEECCCCCceEEEEECCCC------------C-EEEeec--------CCCCccCeE
Confidence 432 4567788 3544 3344333322 24555565332 2 234443 123344678
Q ss_pred eecCCcEEEEeccCC--CcEEEEEeec
Q 001070 283 VLSQAGLLLFANAKK--NAIYSVHLGY 307 (1165)
Q Consensus 283 ~~p~a~~ilLan~~r--~aIYalhl~~ 307 (1165)
++|++.+|+.++... ..||.+.+.-
T Consensus 329 ~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 329 WSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred ECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 899999999987653 3677777654
No 178
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.32 E-value=0.019 Score=71.25 Aligned_cols=129 Identities=13% Similarity=0.238 Sum_probs=87.5
Q ss_pred ecCceEEEeecCCcEEEEeCcc-------hhhHhhcCCcc---------------EEEeecCCCceeEEecCCC------
Q 001070 155 VNKHYVCYGLKGGNVRVLNLNT-------ATRSLLRGHTK---------------IKIWEDSKVAPLIILKPHG------ 206 (1165)
Q Consensus 155 Vn~~yIayG~kdg~IRVwdi~t-------~ir~llrGH~q---------------VriWD~~~g~pl~~lephd------ 206 (1165)
||++|+.+|.=||.||||+|-. .++.+...-.= +|||++....++..+.-+.
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~ 499 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK 499 (712)
T ss_pred cCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccc
Confidence 5799999999999999999984 33333322111 8999988776655554432
Q ss_pred -CCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeec
Q 001070 207 -GQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLS 285 (1165)
Q Consensus 207 -G~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p 285 (1165)
|+.|..+-|+ |-.++ ++||| +.|-.|+|+|+... .-+.-|.+..+... .+ +..++.
T Consensus 500 ~~~rITG~Q~~--p~~~~-~vLVT--SnDSrIRI~d~~~~------------~lv~KfKG~~n~~S-Q~-----~Asfs~ 556 (712)
T KOG0283|consen 500 QGKRITGLQFF--PGDPD-EVLVT--SNDSRIRIYDGRDK------------DLVHKFKGFRNTSS-QI-----SASFSS 556 (712)
T ss_pred cCceeeeeEec--CCCCC-eEEEe--cCCCceEEEeccch------------hhhhhhcccccCCc-ce-----eeeEcc
Confidence 4579999995 66666 66886 67999999997332 22223333222211 12 224577
Q ss_pred CCcEEEEeccCCCcEEEEEeec
Q 001070 286 QAGLLLFANAKKNAIYSVHLGY 307 (1165)
Q Consensus 286 ~a~~ilLan~~r~aIYalhl~~ 307 (1165)
||.+||-+. .-+-||.-++..
T Consensus 557 Dgk~IVs~s-eDs~VYiW~~~~ 577 (712)
T KOG0283|consen 557 DGKHIVSAS-EDSWVYIWKNDS 577 (712)
T ss_pred CCCEEEEee-cCceEEEEeCCC
Confidence 999999988 889999999864
No 179
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.21 E-value=0.11 Score=60.46 Aligned_cols=130 Identities=12% Similarity=0.259 Sum_probs=91.9
Q ss_pred eee--cCceEEEeecCCcEEEEeCcc-hhhHhhcCC---cc------------------------EEEeecCCCceeEEe
Q 001070 153 IAV--NKHYVCYGLKGGNVRVLNLNT-ATRSLLRGH---TK------------------------IKIWEDSKVAPLIIL 202 (1165)
Q Consensus 153 IAV--n~~yIayG~kdg~IRVwdi~t-~ir~llrGH---~q------------------------VriWD~~~g~pl~~l 202 (1165)
++| |++.|+-.+++. |-|+||++ .+-+++.-- .+ |.|||..+..|+..+
T Consensus 91 L~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I 169 (391)
T KOG2110|consen 91 LAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTI 169 (391)
T ss_pred EEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEE
Confidence 444 999999999988 99999998 665555433 22 999999999999999
Q ss_pred cCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCcccc-ccEEEE
Q 001070 203 KPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEE-AFFNQV 281 (1165)
Q Consensus 203 ephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~-aff~sV 281 (1165)
+-|+| +|-.+|| +|+| ..|.|+-...+-|+++....+ .-++.|+ ||-. .=..|+
T Consensus 170 ~aH~~-~lAalaf--s~~G---~llATASeKGTVIRVf~v~~G------------~kl~eFR-------RG~~~~~IySL 224 (391)
T KOG2110|consen 170 NAHKG-PLAALAF--SPDG---TLLATASEKGTVIRVFSVPEG------------QKLYEFR-------RGTYPVSIYSL 224 (391)
T ss_pred EecCC-ceeEEEE--CCCC---CEEEEeccCceEEEEEEcCCc------------cEeeeee-------CCceeeEEEEE
Confidence 99988 9999999 4555 436766666777899997444 3333333 1221 223478
Q ss_pred EeecCCcEEEEeccCCCcEEEEEeecCC
Q 001070 282 VVLSQAGLLLFANAKKNAIYSVHLGYGN 309 (1165)
Q Consensus 282 ~~~p~a~~ilLan~~r~aIYalhl~~g~ 309 (1165)
+++|++.||-.+. .--.|.++-|+.-.
T Consensus 225 ~Fs~ds~~L~~sS-~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 225 SFSPDSQFLAASS-NTETVHIFKLEKVS 251 (391)
T ss_pred EECCCCCeEEEec-CCCeEEEEEecccc
Confidence 8999999665443 33567777776644
No 180
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.18 E-value=0.013 Score=66.24 Aligned_cols=82 Identities=16% Similarity=0.280 Sum_probs=65.5
Q ss_pred eecCceEEEeecCCcEEEEeCcchhhHhhcCCcc------------------------EEEeecCCCceeEEecCCCCCC
Q 001070 154 AVNKHYVCYGLKGGNVRVLNLNTATRSLLRGHTK------------------------IKIWEDSKVAPLIILKPHGGQP 209 (1165)
Q Consensus 154 AVn~~yIayG~kdg~IRVwdi~t~ir~llrGH~q------------------------VriWD~~~g~pl~~lephdG~s 209 (1165)
.-||+-++.|.-||+.++||+.+.+-..+--|.. +|+||.|...|+.+++=. +.
T Consensus 81 sddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP--eR 158 (347)
T KOG0647|consen 81 SDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP--ER 158 (347)
T ss_pred ccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc--ce
Confidence 3468888899999999999999977777777776 999999999999999865 46
Q ss_pred cceeEeecCCCCCCceEEEeecCCCceEEEeEccCc
Q 001070 210 VNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASE 245 (1165)
Q Consensus 210 V~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~ 245 (1165)
||+.--+ .. |++-|-.||.|.++.|+.+
T Consensus 159 vYa~Dv~-----~p---m~vVata~r~i~vynL~n~ 186 (347)
T KOG0647|consen 159 VYAADVL-----YP---MAVVATAERHIAVYNLENP 186 (347)
T ss_pred eeehhcc-----Cc---eeEEEecCCcEEEEEcCCC
Confidence 8876653 12 3334778999999999664
No 181
>PRK03629 tolB translocation protein TolB; Provisional
Probab=96.17 E-value=0.058 Score=63.69 Aligned_cols=130 Identities=10% Similarity=0.122 Sum_probs=77.8
Q ss_pred EeeecCceEEEee---cCCcEEEEeCcc-hhhHh--hcCCcc----------------------EEEeecCCCceeEEec
Q 001070 152 QIAVNKHYVCYGL---KGGNVRVLNLNT-ATRSL--LRGHTK----------------------IKIWEDSKVAPLIILK 203 (1165)
Q Consensus 152 ~IAVn~~yIayG~---kdg~IRVwdi~t-~ir~l--lrGH~q----------------------VriWD~~~g~pl~~le 203 (1165)
.++.||++|+|.. .+..|++||+.+ ..+.+ +.||.. |++||..+|. +.++.
T Consensus 205 ~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~-~~~lt 283 (429)
T PRK03629 205 AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQVT 283 (429)
T ss_pred EEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEcc
Confidence 3666889888854 346899999987 33333 456543 7788998876 44554
Q ss_pred CCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEe
Q 001070 204 PHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVV 283 (1165)
Q Consensus 204 phdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~ 283 (1165)
.++ ..+.+..| +||| +.|+.+...+...+||.+....| . .+.|.+. ......+.+
T Consensus 284 ~~~-~~~~~~~w--SPDG---~~I~f~s~~~g~~~Iy~~d~~~g----------~-~~~lt~~--------~~~~~~~~~ 338 (429)
T PRK03629 284 DGR-SNNTEPTW--FPDS---QNLAYTSDQAGRPQVYKVNINGG----------A-PQRITWE--------GSQNQDADV 338 (429)
T ss_pred CCC-CCcCceEE--CCCC---CEEEEEeCCCCCceEEEEECCCC----------C-eEEeecC--------CCCccCEEE
Confidence 432 36788899 4665 43544343344567776543311 1 2344431 122235678
Q ss_pred ecCCcEEEEeccCC--CcEEEEEeec
Q 001070 284 LSQAGLLLFANAKK--NAIYSVHLGY 307 (1165)
Q Consensus 284 ~p~a~~ilLan~~r--~aIYalhl~~ 307 (1165)
+|++.+|+.+.... ..||.+-++-
T Consensus 339 SpDG~~Ia~~~~~~g~~~I~~~dl~~ 364 (429)
T PRK03629 339 SSDGKFMVMVSSNGGQQHIAKQDLAT 364 (429)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCC
Confidence 99999998876544 3466665543
No 182
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=96.15 E-value=0.013 Score=67.87 Aligned_cols=88 Identities=16% Similarity=0.333 Sum_probs=66.9
Q ss_pred EeeecCceEEEeecCCcEEEEeCcc-hhhHh-----hcCCcc--------------------------------------
Q 001070 152 QIAVNKHYVCYGLKGGNVRVLNLNT-ATRSL-----LRGHTK-------------------------------------- 187 (1165)
Q Consensus 152 ~IAVn~~yIayG~kdg~IRVwdi~t-~ir~l-----lrGH~q-------------------------------------- 187 (1165)
+++-||.||++|..|.+.|||+... -+|.+ ++||-+
T Consensus 63 qFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V 142 (609)
T KOG4227|consen 63 QFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYV 142 (609)
T ss_pred eeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeee
Confidence 4667899999999999999999997 33333 667765
Q ss_pred ------------------------------EEEeecCCCc-eeEEecCCC-CCCcceeEeecCCCCCCceEEEeecCCCc
Q 001070 188 ------------------------------IKIWEDSKVA-PLIILKPHG-GQPVNSAQYLTAPNQAGHIILVTAGPLNR 235 (1165)
Q Consensus 188 ------------------------------VriWD~~~g~-pl~~lephd-G~sV~SVaFl~aP~~~d~~~lvtsGslnr 235 (1165)
|-|||.+... |.+-+.|.+ |..-|+|.| .|..|. ||..++.-.
T Consensus 143 ~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F--~P~~P~---Li~~~~~~~ 217 (609)
T KOG4227|consen 143 ANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF--HPETPA---LILVNSETG 217 (609)
T ss_pred ecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeee--cCCCce---eEEeccccC
Confidence 7899998765 666666654 778999999 788877 555566666
Q ss_pred eEEEeEccC
Q 001070 236 EVKLWASAS 244 (1165)
Q Consensus 236 tIKLW~~a~ 244 (1165)
-+-+||.--
T Consensus 218 G~~~~D~R~ 226 (609)
T KOG4227|consen 218 GPNVFDRRM 226 (609)
T ss_pred CCCceeecc
Confidence 678898743
No 183
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=96.11 E-value=0.016 Score=69.77 Aligned_cols=128 Identities=19% Similarity=0.382 Sum_probs=86.3
Q ss_pred eeec--CceEEEeecCCcEEEEeCcc-hhhHhhcCCcc---------------------------------EEEeecCCC
Q 001070 153 IAVN--KHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK---------------------------------IKIWEDSKV 196 (1165)
Q Consensus 153 IAVn--~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q---------------------------------VriWD~~~g 196 (1165)
|.|| -..||.|.++|.+--||..+ ..+.+|.--+. |.|||.+..
T Consensus 181 v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 181 VSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred eeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence 4454 46789999999999999987 44443321111 999999999
Q ss_pred ceeEEecCCCCC-CcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCcccc
Q 001070 197 APLIILKPHGGQ-PVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEE 275 (1165)
Q Consensus 197 ~pl~~lephdG~-sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~ 275 (1165)
.|+.+-. |+++ ++..+.|.++ ++.. .|.|. .-+.|||||-.++.. .-.+|- ..
T Consensus 261 ~pl~~kd-h~~e~pi~~l~~~~~-~~q~---~v~S~-Dk~~~kiWd~~~Gk~------------~asiEp--------t~ 314 (703)
T KOG2321|consen 261 KPLLVKD-HGYELPIKKLDWQDT-DQQN---KVVSM-DKRILKIWDECTGKP------------MASIEP--------TS 314 (703)
T ss_pred Cceeecc-cCCccceeeeccccc-CCCc---eEEec-chHHhhhcccccCCc------------eeeccc--------cC
Confidence 9988775 5555 9999999866 3322 33333 457899999655532 222221 11
Q ss_pred ccEEEEEeecCCcEEEEecc--CCCcEEEEEeec
Q 001070 276 AFFNQVVVLSQAGLLLFANA--KKNAIYSVHLGY 307 (1165)
Q Consensus 276 aff~sV~~~p~a~~ilLan~--~r~aIYalhl~~ 307 (1165)
+ +|-+++-|++|++|+||- ++..+|+=.|+.
T Consensus 315 ~-lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGP 347 (703)
T KOG2321|consen 315 D-LNDFCFVPGSGMFFTANESSKMHTYYIPSLGP 347 (703)
T ss_pred C-cCceeeecCCceEEEecCCCcceeEEccccCC
Confidence 2 566777899999999975 566667666654
No 184
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=96.06 E-value=0.047 Score=65.44 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=26.6
Q ss_pred cCceEEEeecCCcEEEEeCcchhhHhh--cCCcc
Q 001070 156 NKHYVCYGLKGGNVRVLNLNTATRSLL--RGHTK 187 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t~ir~ll--rGH~q 187 (1165)
||+||.+|..||+|-=||+.+....-| ++|+.
T Consensus 331 d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~n 364 (603)
T KOG0318|consen 331 DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTN 364 (603)
T ss_pred CCCEEEeeccCceEEEEecCCccccccccccccc
Confidence 689999999999999999999444433 78876
No 185
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=0.062 Score=61.19 Aligned_cols=151 Identities=16% Similarity=0.225 Sum_probs=93.4
Q ss_pred CceEEEeecCCcEEEEeCcchhhHhhcCCccEEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCce
Q 001070 157 KHYVCYGLKGGNVRVLNLNTATRSLLRGHTKIKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNRE 236 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~t~ir~llrGH~qVriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrt 236 (1165)
|+.+|+++.|++|.|||.... .-+=.+-..|+-|+| +|..|.|. .|+ +|+ +|++.+.|||
T Consensus 25 GRRmAtCSsDq~vkI~d~~~~---------------s~~W~~Ts~Wrah~~-Si~rV~WA-hPE--fGq-vvA~cS~Drt 84 (361)
T KOG2445|consen 25 GRRMATCSSDQTVKIWDSTSD---------------SGTWSCTSSWRAHDG-SIWRVVWA-HPE--FGQ-VVATCSYDRT 84 (361)
T ss_pred CceeeeccCCCcEEEEeccCC---------------CCceEEeeeEEecCC-cEEEEEec-Ccc--ccc-eEEEEecCCc
Confidence 444458999999888875321 001124677999987 99999995 333 334 6778999999
Q ss_pred EEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEeecCCCcccccc
Q 001070 237 VKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGYGNNSAATRI 316 (1165)
Q Consensus 237 IKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~g~~~~~~r~ 316 (1165)
++||+=... . ....+..|+-..||. +.+.-++.|.+.|.--=+.||.+..-.|-.|.-+..+-+ ..+-
T Consensus 85 v~iWEE~~~-~--~~~~~~~Wv~~ttl~--------DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n-Ls~W 152 (361)
T KOG2445|consen 85 VSIWEEQEK-S--EEAHGRRWVRRTTLV--------DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN-LSQW 152 (361)
T ss_pred eeeeeeccc-c--cccccceeEEEEEee--------cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccc-cccc
Confidence 999995211 0 112234688888888 344556688888887777777777777766655544432 2233
Q ss_pred ccccccccccceeeeeeccCCCCcceEEEEEe
Q 001070 317 DYIAEFTVTMPVLSFTGTIDPPSEHIIKLYCV 348 (1165)
Q Consensus 317 dyiaeF~v~~PILSft~~~d~~ge~~vq~yCv 348 (1165)
.-..||.+ + .++-|....-.|||
T Consensus 153 ~Lq~Ei~~------~---~~pp~~~~~~~~Cv 175 (361)
T KOG2445|consen 153 TLQHEIQN------V---IDPPGKNKQPCFCV 175 (361)
T ss_pred hhhhhhhh------c---cCCcccccCcceEE
Confidence 33344332 1 12445555556665
No 186
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=95.97 E-value=0.034 Score=66.68 Aligned_cols=113 Identities=18% Similarity=0.292 Sum_probs=81.3
Q ss_pred eeecCceEEEeecCCcEEEEeCcchhhHhhcCCcc-EE--EeecCCC--------c----------eeEEecCCCCCCcc
Q 001070 153 IAVNKHYVCYGLKGGNVRVLNLNTATRSLLRGHTK-IK--IWEDSKV--------A----------PLIILKPHGGQPVN 211 (1165)
Q Consensus 153 IAVn~~yIayG~kdg~IRVwdi~t~ir~llrGH~q-Vr--iWD~~~g--------~----------pl~~lephdG~sV~ 211 (1165)
-.-||.=|.+..|||.|+||.+..-+|+++.-.+. || =|+-.+. . -+-+|+.||| -|-
T Consensus 112 W~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDG-iiL 190 (737)
T KOG1524|consen 112 WSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDG-LVL 190 (737)
T ss_pred cCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCc-EEE
Confidence 34578888999999999999999999998766655 54 4775432 1 1789999999 788
Q ss_pred eeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEE
Q 001070 212 SAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLL 291 (1165)
Q Consensus 212 SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~il 291 (1165)
|+-|. |. .| ||.+|.-|=..|+||..+.- -|.+++ |+--+-+|+..|+.-|+|
T Consensus 191 ~~~W~--~~-s~---lI~sgGED~kfKvWD~~G~~-----------------Lf~S~~----~ey~ITSva~npd~~~~v 243 (737)
T KOG1524|consen 191 SLSWS--TQ-SN---IIASGGEDFRFKIWDAQGAN-----------------LFTSAA----EEYAITSVAFNPEKDYLL 243 (737)
T ss_pred EeecC--cc-cc---ceeecCCceeEEeecccCcc-----------------cccCCh----hccceeeeeeccccceee
Confidence 88882 22 34 78889999999999974431 144443 455566888888855554
Q ss_pred Ee
Q 001070 292 FA 293 (1165)
Q Consensus 292 La 293 (1165)
=+
T Consensus 244 ~S 245 (737)
T KOG1524|consen 244 WS 245 (737)
T ss_pred ee
Confidence 33
No 187
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.026 Score=65.55 Aligned_cols=157 Identities=17% Similarity=0.249 Sum_probs=105.4
Q ss_pred CCCCCceeecCCceEEecccCCCCCCCCCCcc-----cccccccCCCcccccccEeeecCceEEEeecC--CcEEEEeCc
Q 001070 103 TAPIYGKRVFGDYVAYDVDAVEEGREPTQQLE-----VNPITKYGSDPELLIGRQIAVNKHYVCYGLKG--GNVRVLNLN 175 (1165)
Q Consensus 103 ~~p~~Gr~l~g~~~~~dVd~~~~ge~~~pqle-----v~pIt~Y~sd~~~~~GR~IAVn~~yIayG~kd--g~IRVwdi~ 175 (1165)
+.||+|-.+...-++-+|+. |+.|--+++ -++.++.-+-+++++-|+-.=+..++|||.|- ....|||..
T Consensus 105 ~~~I~gl~~~dg~Litc~~s---G~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle 181 (412)
T KOG3881|consen 105 TKSIKGLKLADGTLITCVSS---GNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLE 181 (412)
T ss_pred cccccchhhcCCEEEEEecC---CcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecc
Confidence 67887777755666666654 444423444 77888999999999999988889999999998 889999988
Q ss_pred chhhHhhcCCccEEEeecCCCce--eEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCC
Q 001070 176 TATRSLLRGHTKIKIWEDSKVAP--LIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTH 253 (1165)
Q Consensus 176 t~ir~llrGH~qVriWD~~~g~p--l~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~ 253 (1165)
+. .+||....--+ |.-.-| -|..++-|+.. .+ +..++ .+.--+.+++||...++
T Consensus 182 ~~----------~qiw~aKNvpnD~L~LrVP---vW~tdi~Fl~g--~~-~~~fa-t~T~~hqvR~YDt~~qR------- 237 (412)
T KOG3881|consen 182 QS----------KQIWSAKNVPNDRLGLRVP---VWITDIRFLEG--SP-NYKFA-TITRYHQVRLYDTRHQR------- 237 (412)
T ss_pred cc----------eeeeeccCCCCccccceee---eeeccceecCC--CC-CceEE-EEecceeEEEecCcccC-------
Confidence 75 34554332100 111111 13556677621 11 22245 47788999999987654
Q ss_pred CCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCC
Q 001070 254 AESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKN 298 (1165)
Q Consensus 254 ~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~ 298 (1165)
+-+.+|.| .+--..++.++|++.+|..+|++.+
T Consensus 238 ----RPV~~fd~--------~E~~is~~~l~p~gn~Iy~gn~~g~ 270 (412)
T KOG3881|consen 238 ----RPVAQFDF--------LENPISSTGLTPSGNFIYTGNTKGQ 270 (412)
T ss_pred ----cceeEecc--------ccCcceeeeecCCCcEEEEecccch
Confidence 44556665 2344568899999999999998754
No 188
>PRK02889 tolB translocation protein TolB; Provisional
Probab=95.94 E-value=0.067 Score=62.96 Aligned_cols=130 Identities=14% Similarity=0.197 Sum_probs=75.3
Q ss_pred EeeecCceEEEeec---CCcEEEEeCcchhhH-h--hcCCcc--------------------EEEe--ecCCCceeEEec
Q 001070 152 QIAVNKHYVCYGLK---GGNVRVLNLNTATRS-L--LRGHTK--------------------IKIW--EDSKVAPLIILK 203 (1165)
Q Consensus 152 ~IAVn~~yIayG~k---dg~IRVwdi~t~ir~-l--lrGH~q--------------------VriW--D~~~g~pl~~le 203 (1165)
.++.||++|+|... ..+|.+||+.+..+. + +.|+.. .+|| |..++. +.++.
T Consensus 202 ~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt 280 (427)
T PRK02889 202 AWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLT 280 (427)
T ss_pred eEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECC
Confidence 36668888888764 346999999973222 2 344432 3444 444444 66776
Q ss_pred CCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEe
Q 001070 204 PHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVV 283 (1165)
Q Consensus 204 phdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~ 283 (1165)
.++| .+.+..| +||| +.++.....+....||.+....| . .+.+.+. ..+.....+
T Consensus 281 ~~~~-~~~~~~w--SpDG---~~l~f~s~~~g~~~Iy~~~~~~g----------~-~~~lt~~--------g~~~~~~~~ 335 (427)
T PRK02889 281 QSSG-IDTEPFF--SPDG---RSIYFTSDRGGAPQIYRMPASGG----------A-AQRVTFT--------GSYNTSPRI 335 (427)
T ss_pred CCCC-CCcCeEE--cCCC---CEEEEEecCCCCcEEEEEECCCC----------c-eEEEecC--------CCCcCceEE
Confidence 6544 4567888 4655 33554333445678888754321 1 1223331 122335678
Q ss_pred ecCCcEEEEeccCC--CcEEEEEeec
Q 001070 284 LSQAGLLLFANAKK--NAIYSVHLGY 307 (1165)
Q Consensus 284 ~p~a~~ilLan~~r--~aIYalhl~~ 307 (1165)
+|++++|+.+.... ..||.+.+.-
T Consensus 336 SpDG~~Ia~~s~~~g~~~I~v~d~~~ 361 (427)
T PRK02889 336 SPDGKLLAYISRVGGAFKLYVQDLAT 361 (427)
T ss_pred CCCCCEEEEEEccCCcEEEEEEECCC
Confidence 99999998766543 3677777654
No 189
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.85 E-value=0.012 Score=67.77 Aligned_cols=162 Identities=11% Similarity=0.194 Sum_probs=104.1
Q ss_pred ecCCceEEecccCCCCCCCCC---C------cccccccccCCCccccc-ccEeeecCceEEEeecCCcEEEEeCcc--hh
Q 001070 111 VFGDYVAYDVDAVEEGREPTQ---Q------LEVNPITKYGSDPELLI-GRQIAVNKHYVCYGLKGGNVRVLNLNT--AT 178 (1165)
Q Consensus 111 l~g~~~~~dVd~~~~ge~~~p---q------lev~pIt~Y~sd~~~~~-GR~IAVn~~yIayG~kdg~IRVwdi~t--~i 178 (1165)
+-|+.+++++|...-+..-.. + --.+|+..|.|.+-... ++-=.|--..|+.++.|+.|-++|..+ -+
T Consensus 144 ilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl 223 (433)
T KOG0268|consen 144 ILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPL 223 (433)
T ss_pred eeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCcc
Confidence 356777888887544321100 1 12469999999874221 111112246678888999999999987 44
Q ss_pred hHhhcCCcc--------------------EEEeecCCC-ceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceE
Q 001070 179 RSLLRGHTK--------------------IKIWEDSKV-APLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREV 237 (1165)
Q Consensus 179 r~llrGH~q--------------------VriWD~~~g-~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtI 237 (1165)
+.+.-+... ++.+|++.. .||.++..| +..|.+|.| +|-|.. +++||.||+|
T Consensus 224 ~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh-vsAV~dVdf--sptG~E----fvsgsyDksI 296 (433)
T KOG0268|consen 224 KKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH-VSAVMDVDF--SPTGQE----FVSGSYDKSI 296 (433)
T ss_pred ceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhccc-ceeEEEecc--CCCcch----hccccccceE
Confidence 444444333 778888874 689999988 679999999 687777 5589999999
Q ss_pred EEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCC
Q 001070 238 KLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKN 298 (1165)
Q Consensus 238 KLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~ 298 (1165)
+|+....+.. -.-.-|-+- .-+..|..+-|+.||+-..-..|
T Consensus 297 RIf~~~~~~S---------RdiYhtkRM----------q~V~~Vk~S~Dskyi~SGSdd~n 338 (433)
T KOG0268|consen 297 RIFPVNHGHS---------RDIYHTKRM----------QHVFCVKYSMDSKYIISGSDDGN 338 (433)
T ss_pred EEeecCCCcc---------hhhhhHhhh----------heeeEEEEeccccEEEecCCCcc
Confidence 9999744311 011111111 12237788888888886555444
No 190
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.83 E-value=0.021 Score=67.55 Aligned_cols=76 Identities=28% Similarity=0.576 Sum_probs=59.2
Q ss_pred EEEeecCCcEEEEeCcc-hhhHhhc--------------------CCcc--EEEeecCCCceeEEecCCCCCCcceeEee
Q 001070 160 VCYGLKGGNVRVLNLNT-ATRSLLR--------------------GHTK--IKIWEDSKVAPLIILKPHGGQPVNSAQYL 216 (1165)
Q Consensus 160 IayG~kdg~IRVwdi~t-~ir~llr--------------------GH~q--VriWD~~~g~pl~~lephdG~sV~SVaFl 216 (1165)
|+++.+.|..+-.|+.+ .+-+-|+ ||+. |-.|--..-.||..+--|-| +|.||||
T Consensus 224 L~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g-~V~siAv- 301 (545)
T KOG1272|consen 224 LVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRG-PVSSIAV- 301 (545)
T ss_pred eeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCC-CcceEEE-
Confidence 45567789999999987 4444332 3333 99999888888888777876 9999999
Q ss_pred cCCCCCCceEEEeecCCCceEEEeEc
Q 001070 217 TAPNQAGHIILVTAGPLNREVKLWAS 242 (1165)
Q Consensus 217 ~aP~~~d~~~lvtsGslnrtIKLW~~ 242 (1165)
.++++|++|+| +||.+||||+
T Consensus 302 ----~~~G~YMaTtG-~Dr~~kIWDl 322 (545)
T KOG1272|consen 302 ----DRGGRYMATTG-LDRKVKIWDL 322 (545)
T ss_pred ----CCCCcEEeecc-cccceeEeee
Confidence 35567899977 9999999998
No 191
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=95.80 E-value=0.096 Score=64.48 Aligned_cols=112 Identities=13% Similarity=0.230 Sum_probs=75.2
Q ss_pred cCceEEEeecCCcEEEEeCcchhhHhhcCCccEEEeecCC-------------------------CceeE-EecCCCCCC
Q 001070 156 NKHYVCYGLKGGNVRVLNLNTATRSLLRGHTKIKIWEDSK-------------------------VAPLI-ILKPHGGQP 209 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t~ir~llrGH~qVriWD~~~-------------------------g~pl~-~lephdG~s 209 (1165)
|.-|||+|+-|..||||.| ++||+.+ ++-++ .+-+|+ ++
T Consensus 205 ~~~~laS~SQD~yIRiW~i--------------~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe-DW 269 (764)
T KOG1063|consen 205 DDLLLASSSQDRYIRIWRI--------------VLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE-DW 269 (764)
T ss_pred CcEEEEecCCceEEEEEEE--------------EecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc-cc
Confidence 5678999999999999985 3333221 01122 233775 59
Q ss_pred cceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccc--cEEEEEeecCC
Q 001070 210 VNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEA--FFNQVVVLSQA 287 (1165)
Q Consensus 210 V~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~a--ff~sV~~~p~a 287 (1165)
||||-| .|.+-+ |+ |+|.|+++-||.-.... +.|.|.-.|-..+ +.+ || .+...|.+
T Consensus 270 V~sv~W--~p~~~~---LL-SASaDksmiiW~pd~~t--------GiWv~~vRlGe~g------g~a~GF~-g~lw~~n~ 328 (764)
T KOG1063|consen 270 VYSVWW--HPEGLD---LL-SASADKSMIIWKPDENT--------GIWVDVVRLGEVG------GSAGGFW-GGLWSPNS 328 (764)
T ss_pred eEEEEE--ccchhh---he-ecccCcceEEEecCCcc--------ceEEEEEEeeccc------cccccee-eEEEcCCC
Confidence 999999 465533 77 69999999999975543 3589988876432 223 55 77777777
Q ss_pred cEEEEeccCCCcEEEEE
Q 001070 288 GLLLFANAKKNAIYSVH 304 (1165)
Q Consensus 288 ~~ilLan~~r~aIYalh 304 (1165)
-.++++.+--+.|.--
T Consensus 329 -~~ii~~g~~Gg~hlWk 344 (764)
T KOG1063|consen 329 -NVIIAHGRTGGFHLWK 344 (764)
T ss_pred -CEEEEecccCcEEEEe
Confidence 4566777777766655
No 192
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.79 E-value=0.088 Score=61.97 Aligned_cols=115 Identities=14% Similarity=0.163 Sum_probs=69.7
Q ss_pred CcEEEEeCcc-hhhHhhcCCcc------------------------EEEeecCCCceeEEecCCCCCCcceeEeecCCCC
Q 001070 167 GNVRVLNLNT-ATRSLLRGHTK------------------------IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQ 221 (1165)
Q Consensus 167 g~IRVwdi~t-~ir~llrGH~q------------------------VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~ 221 (1165)
++|+|||... ..+.|..++.. |++||..+|.. ..+..++| .+.+++| +|+|
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-~~l~~~~g-~~~~~~~--SpDG 259 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-ELVASFRG-INGAPSF--SPDG 259 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-EEeccCCC-CccCceE--CCCC
Confidence 5799999987 55656555433 88889887764 33444444 3457888 5665
Q ss_pred CCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEe-ccC-CCc
Q 001070 222 AGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFA-NAK-KNA 299 (1165)
Q Consensus 222 ~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLa-n~~-r~a 299 (1165)
.. .++..+...+.+|.+|+++++ .|.+ +.. +......+..+|++++|+.+ |.. ...
T Consensus 260 ~~-l~~~~s~~g~~~Iy~~d~~~g------------~~~~-lt~--------~~~~~~~~~~spDG~~l~f~sd~~g~~~ 317 (433)
T PRK04922 260 RR-LALTLSRDGNPEIYVMDLGSR------------QLTR-LTN--------HFGIDTEPTWAPDGKSIYFTSDRGGRPQ 317 (433)
T ss_pred CE-EEEEEeCCCCceEEEEECCCC------------CeEE-Ccc--------CCCCccceEECCCCCEEEEEECCCCCce
Confidence 43 212223444568999998654 4443 221 11222356789999976654 433 457
Q ss_pred EEEEEeec
Q 001070 300 IYSVHLGY 307 (1165)
Q Consensus 300 IYalhl~~ 307 (1165)
||.+.+.-
T Consensus 318 iy~~dl~~ 325 (433)
T PRK04922 318 IYRVAASG 325 (433)
T ss_pred EEEEECCC
Confidence 99987754
No 193
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=95.77 E-value=0.051 Score=62.04 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=44.1
Q ss_pred cCCceEEecccCCCCCCCCCCcccccccccCCCcccccccEeeecCceEEEeecCCcEEEEeCcc
Q 001070 112 FGDYVAYDVDAVEEGREPTQQLEVNPITKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNT 176 (1165)
Q Consensus 112 ~g~~~~~dVd~~~~ge~~~pqlev~pIt~Y~sd~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t 176 (1165)
.|.-++||.+++..|..- .-.+.||+-.-|-+ ||++|.|.++|..|..||.-.
T Consensus 44 nG~vvI~D~~T~~iar~l--saH~~pi~sl~WS~----------dgr~LltsS~D~si~lwDl~~ 96 (405)
T KOG1273|consen 44 NGRVVIYDFDTFRIARML--SAHVRPITSLCWSR----------DGRKLLTSSRDWSIKLWDLLK 96 (405)
T ss_pred CCcEEEEEccccchhhhh--hccccceeEEEecC----------CCCEeeeecCCceeEEEeccC
Confidence 345678999999998887 66788888777765 777888999999999999875
No 194
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=95.71 E-value=0.025 Score=63.92 Aligned_cols=52 Identities=23% Similarity=0.408 Sum_probs=38.2
Q ss_pred EEEeecCC-CceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCc
Q 001070 188 IKIWEDSK-VAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASE 245 (1165)
Q Consensus 188 VriWD~~~-g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~ 245 (1165)
|-|-|+|. +.|+.+|+.|.| +|+.++| +|+.+.|+ .| +.-|...-|||+..-
T Consensus 268 V~iLDiR~P~tpva~L~~H~a-~VNgIaW--aPhS~~hi--ct-aGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 268 VVILDIRVPCTPVARLRNHQA-SVNGIAW--APHSSSHI--CT-AGDDCQALIWDLQQM 320 (364)
T ss_pred EEEEEecCCCcceehhhcCcc-cccceEe--cCCCCcee--ee-cCCcceEEEEecccc
Confidence 44555553 347899998854 9999999 89887743 54 557888899999654
No 195
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=95.67 E-value=0.041 Score=66.04 Aligned_cols=62 Identities=13% Similarity=0.255 Sum_probs=46.9
Q ss_pred eeecCceEEEeecCCcEEEEeCcc-hhhHhh----cCCcc------------------EEEeecCCCceeEEecCCCCCC
Q 001070 153 IAVNKHYVCYGLKGGNVRVLNLNT-ATRSLL----RGHTK------------------IKIWEDSKVAPLIILKPHGGQP 209 (1165)
Q Consensus 153 IAVn~~yIayG~kdg~IRVwdi~t-~ir~ll----rGH~q------------------VriWD~~~g~pl~~lephdG~s 209 (1165)
++-||+|||+-++||-.||+|-.+ .++.++ -|--. |-||-...+.-|.|=.+|. -|
T Consensus 298 FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHk-SW 376 (636)
T KOG2394|consen 298 FSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHK-SW 376 (636)
T ss_pred EcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccc-cc
Confidence 444899999999999999999998 444433 33333 9999988776666665552 29
Q ss_pred cceeEe
Q 001070 210 VNSAQY 215 (1165)
Q Consensus 210 V~SVaF 215 (1165)
|.-|||
T Consensus 377 Vs~VaF 382 (636)
T KOG2394|consen 377 VSVVAF 382 (636)
T ss_pred eeeEee
Confidence 999999
No 196
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=95.64 E-value=0.48 Score=55.03 Aligned_cols=177 Identities=17% Similarity=0.238 Sum_probs=113.3
Q ss_pred Cceee-c-------CCceEEecccCCCCCCCCCCcccccccccCCCcccccccEeeec--CceEEEeec-CCcEEEEeCc
Q 001070 107 YGKRV-F-------GDYVAYDVDAVEEGREPTQQLEVNPITKYGSDPELLIGRQIAVN--KHYVCYGLK-GGNVRVLNLN 175 (1165)
Q Consensus 107 ~Gr~l-~-------g~~~~~dVd~~~~ge~~~pqlev~pIt~Y~sd~~~~~GR~IAVn--~~yIayG~k-dg~IRVwdi~ 175 (1165)
++|+| . |.-..|.+|- ..|+-. .|.-.+|+.-.. --|+|| |+|++.+.- -|.|+|+=++
T Consensus 50 ~~~~LY~v~~~~~~ggvaay~iD~-~~G~Lt--~ln~~~~~g~~p-------~yvsvd~~g~~vf~AnY~~g~v~v~p~~ 119 (346)
T COG2706 50 DQRHLYVVNEPGEEGGVAAYRIDP-DDGRLT--FLNRQTLPGSPP-------CYVSVDEDGRFVFVANYHSGSVSVYPLQ 119 (346)
T ss_pred CCCEEEEEEecCCcCcEEEEEEcC-CCCeEE--EeeccccCCCCC-------eEEEECCCCCEEEEEEccCceEEEEEcc
Confidence 67777 2 2456788885 234443 444444433222 227775 778877655 4889998886
Q ss_pred c--hhhHh-------hc--------CCcc--------------------EEEeecCCCc--e--eEEecCCCCCCcceeE
Q 001070 176 T--ATRSL-------LR--------GHTK--------------------IKIWEDSKVA--P--LIILKPHGGQPVNSAQ 214 (1165)
Q Consensus 176 t--~ir~l-------lr--------GH~q--------------------VriWD~~~g~--p--l~~lephdG~sV~SVa 214 (1165)
. .+... -. .|.+ |.+||...|. + ...++| |--...++
T Consensus 120 ~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~--G~GPRHi~ 197 (346)
T COG2706 120 ADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP--GAGPRHIV 197 (346)
T ss_pred cCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCC--CCCcceEE
Confidence 5 33322 11 1222 8888877764 2 111233 44578889
Q ss_pred eecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEec
Q 001070 215 YLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFAN 294 (1165)
Q Consensus 215 Fl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan 294 (1165)
| .|+++. +-.-..||.||-.|+.... ....+|+||+---+..-. .+.-.--+.++++|+||.++|
T Consensus 198 F--Hpn~k~---aY~v~EL~stV~v~~y~~~--------~g~~~~lQ~i~tlP~dF~--g~~~~aaIhis~dGrFLYasN 262 (346)
T COG2706 198 F--HPNGKY---AYLVNELNSTVDVLEYNPA--------VGKFEELQTIDTLPEDFT--GTNWAAAIHISPDGRFLYASN 262 (346)
T ss_pred E--cCCCcE---EEEEeccCCEEEEEEEcCC--------CceEEEeeeeccCccccC--CCCceeEEEECCCCCEEEEec
Confidence 9 566644 5445899999999998664 235799999985444321 122344567999999999999
Q ss_pred cCCCcEEEEEeecCCC
Q 001070 295 AKKNAIYSVHLGYGNN 310 (1165)
Q Consensus 295 ~~r~aIYalhl~~g~~ 310 (1165)
..-+.|-++|+....+
T Consensus 263 Rg~dsI~~f~V~~~~g 278 (346)
T COG2706 263 RGHDSIAVFSVDPDGG 278 (346)
T ss_pred CCCCeEEEEEEcCCCC
Confidence 9999999999997554
No 197
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.51 E-value=0.28 Score=58.43 Aligned_cols=129 Identities=13% Similarity=0.153 Sum_probs=72.7
Q ss_pred EeeecCceEEEeecC---CcEEEEeCcc-hhhH--hhcCCcc----------------------EEEeecCCCceeEEec
Q 001070 152 QIAVNKHYVCYGLKG---GNVRVLNLNT-ATRS--LLRGHTK----------------------IKIWEDSKVAPLIILK 203 (1165)
Q Consensus 152 ~IAVn~~yIayG~kd---g~IRVwdi~t-~ir~--llrGH~q----------------------VriWD~~~g~pl~~le 203 (1165)
.++-||++|+|...+ .+|.+||+.+ ..+. -+.|+.. |++||..++. +.++.
T Consensus 224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~-~~~lt 302 (448)
T PRK04792 224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA-LTRIT 302 (448)
T ss_pred eECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC-eEECc
Confidence 366689999997643 3699999987 3222 2344432 7777887765 45555
Q ss_pred CCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEe
Q 001070 204 PHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVV 283 (1165)
Q Consensus 204 phdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~ 283 (1165)
.+. ..+.+.+| +||+ ++++.+...+....||......| + ...|.+.. +. ....+.
T Consensus 303 ~~~-~~~~~p~w--SpDG---~~I~f~s~~~g~~~Iy~~dl~~g----------~-~~~Lt~~g------~~--~~~~~~ 357 (448)
T PRK04792 303 RHR-AIDTEPSW--HPDG---KSLIFTSERGGKPQIYRVNLASG----------K-VSRLTFEG------EQ--NLGGSI 357 (448)
T ss_pred cCC-CCccceEE--CCCC---CEEEEEECCCCCceEEEEECCCC----------C-EEEEecCC------CC--CcCeeE
Confidence 443 25677888 4655 33444443333444554332211 2 23333311 11 124577
Q ss_pred ecCCcEEEEeccCCC--cEEEEEee
Q 001070 284 LSQAGLLLFANAKKN--AIYSVHLG 306 (1165)
Q Consensus 284 ~p~a~~ilLan~~r~--aIYalhl~ 306 (1165)
+|++.+|++++.... .||.+-++
T Consensus 358 SpDG~~l~~~~~~~g~~~I~~~dl~ 382 (448)
T PRK04792 358 TPDGRSMIMVNRTNGKFNIARQDLE 382 (448)
T ss_pred CCCCCEEEEEEecCCceEEEEEECC
Confidence 999999988876544 56665544
No 198
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=95.47 E-value=0.041 Score=66.68 Aligned_cols=82 Identities=21% Similarity=0.397 Sum_probs=62.7
Q ss_pred eEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccE
Q 001070 199 LIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFF 278 (1165)
Q Consensus 199 l~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff 278 (1165)
--++++|.| -|.++.- .|.| . .|++|+-|++++||+++++ +|+.|+.| +..+
T Consensus 393 ~lvyrGHtg-~Vr~iSv--dp~G-~---wlasGsdDGtvriWEi~Tg------------Rcvr~~~~---------d~~I 444 (733)
T KOG0650|consen 393 ALVYRGHTG-LVRSISV--DPSG-E---WLASGSDDGTVRIWEIATG------------RCVRTVQF---------DSEI 444 (733)
T ss_pred eeeEeccCC-eEEEEEe--cCCc-c---eeeecCCCCcEEEEEeecc------------eEEEEEee---------ccee
Confidence 556777776 5666555 3422 2 4668999999999999776 99999998 4577
Q ss_pred EEEEeecCCcEEEEeccCCCcEEEEEeecC
Q 001070 279 NQVVVLSQAGLLLFANAKKNAIYSVHLGYG 308 (1165)
Q Consensus 279 ~sV~~~p~a~~ilLan~~r~aIYalhl~~g 308 (1165)
-+|+..|.+.+-|||-|....+..+--.+|
T Consensus 445 ~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G 474 (733)
T KOG0650|consen 445 RSVAWNPLSDLCVLAVAVGECVLIVNPIFG 474 (733)
T ss_pred EEEEecCCCCceeEEEEecCceEEeCcccc
Confidence 799999999988888777777666666665
No 199
>PRK03629 tolB translocation protein TolB; Provisional
Probab=95.39 E-value=0.16 Score=60.02 Aligned_cols=113 Identities=13% Similarity=0.085 Sum_probs=67.9
Q ss_pred CcEEEEeCcc-hhhHhhcCCcc------------------------EEEeecCCCceeEEecCCCCCCcceeEeecCCCC
Q 001070 167 GNVRVLNLNT-ATRSLLRGHTK------------------------IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQ 221 (1165)
Q Consensus 167 g~IRVwdi~t-~ir~llrGH~q------------------------VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~ 221 (1165)
..|.|||... ..+.+.+|... |++||..+|.. ..+..+.| .+.+++| +|||
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-~~l~~~~~-~~~~~~~--SPDG 254 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPR-HNGAPAF--SPDG 254 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-EEccCCCC-CcCCeEE--CCCC
Confidence 4799999987 55555554422 78888887753 22222223 2557889 5666
Q ss_pred CCceEEEee--cCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEE-EeccC-C
Q 001070 222 AGHIILVTA--GPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLL-FANAK-K 297 (1165)
Q Consensus 222 ~d~~~lvts--GslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~il-Lan~~-r 297 (1165)
.. |+.+ ...+..|.+||+.++ ++.+-... ...+.....+|++++|+ .++.. .
T Consensus 255 ~~---La~~~~~~g~~~I~~~d~~tg------------~~~~lt~~---------~~~~~~~~wSPDG~~I~f~s~~~g~ 310 (429)
T PRK03629 255 SK---LAFALSKTGSLNLYVMDLASG------------QIRQVTDG---------RSNNTEPTWFPDSQNLAYTSDQAGR 310 (429)
T ss_pred CE---EEEEEcCCCCcEEEEEECCCC------------CEEEccCC---------CCCcCceEECCCCCEEEEEeCCCCC
Confidence 43 4433 334457888998554 45443322 12234678899999765 44432 4
Q ss_pred CcEEEEEeec
Q 001070 298 NAIYSVHLGY 307 (1165)
Q Consensus 298 ~aIYalhl~~ 307 (1165)
..||.+.+.-
T Consensus 311 ~~Iy~~d~~~ 320 (429)
T PRK03629 311 PQVYKVNING 320 (429)
T ss_pred ceEEEEECCC
Confidence 6899887764
No 200
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=95.14 E-value=0.056 Score=61.86 Aligned_cols=166 Identities=20% Similarity=0.260 Sum_probs=111.4
Q ss_pred Cceee-cCCc-eEEecccCCCCCCCCCCcccccccccCCCccccccc-----Eeeec---CceEEEeecCCcEEEEeCcc
Q 001070 107 YGKRV-FGDY-VAYDVDAVEEGREPTQQLEVNPITKYGSDPELLIGR-----QIAVN---KHYVCYGLKGGNVRVLNLNT 176 (1165)
Q Consensus 107 ~Gr~l-~g~~-~~~dVd~~~~ge~~~pqlev~pIt~Y~sd~~~~~GR-----~IAVn---~~yIayG~kdg~IRVwdi~t 176 (1165)
+|..| -|.. -+.--|+..||..- | | |.+.-+--.|. .||.+ -+-++-|.-..++-|++-..
T Consensus 169 DGeqlfaGykrcirvFdt~RpGr~c-~---v-----y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~ 239 (406)
T KOG2919|consen 169 DGEQLFAGYKRCIRVFDTSRPGRDC-P---V-----YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG 239 (406)
T ss_pred CCCeEeecccceEEEeeccCCCCCC-c---c-----hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence 78888 6733 33334666788765 2 2 22222211122 25553 55677777777777776666
Q ss_pred -hhhHhhcCCcc-----------------------EEEeecCC-CceeEEecCCCCCCcceeEeecCCCCCCceEEEeec
Q 001070 177 -ATRSLLRGHTK-----------------------IKIWEDSK-VAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAG 231 (1165)
Q Consensus 177 -~ir~llrGH~q-----------------------VriWD~~~-g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsG 231 (1165)
.-..||-||.. |-.||+|. +.||-.|+.|-|+-=..+.|=..|.+ .+|+ ||
T Consensus 240 ~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~---~~La-sG 315 (406)
T KOG2919|consen 240 RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKG---EILA-SG 315 (406)
T ss_pred CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCC---ceee-cc
Confidence 66678889987 88999996 67999999998877788889435554 4355 79
Q ss_pred CCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEee
Q 001070 232 PLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLG 306 (1165)
Q Consensus 232 slnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~ 306 (1165)
+.+.-|.+||+..-..| .+... .+++-+|-|+++|- +=+||-...+-||...-+
T Consensus 316 ~tdG~V~vwdlk~~gn~-----------------~sv~~--~~sd~vNgvslnP~--mpilatssGqr~f~~~~d 369 (406)
T KOG2919|consen 316 DTDGSVRVWDLKDLGNE-----------------VSVTG--NYSDTVNGVSLNPI--MPILATSSGQRIFKYPKD 369 (406)
T ss_pred CCCccEEEEecCCCCCc-----------------ccccc--cccccccceecCcc--cceeeeccCceeecCCCc
Confidence 99999999999664222 11111 36788999999998 667777777777765444
No 201
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=95.08 E-value=0.22 Score=57.21 Aligned_cols=114 Identities=10% Similarity=0.103 Sum_probs=66.6
Q ss_pred CCcEEEEeCcc-hhhHhhcCC------------------------ccEEEeecCCCceeEEecCCCCCCcceeEeecCCC
Q 001070 166 GGNVRVLNLNT-ATRSLLRGH------------------------TKIKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPN 220 (1165)
Q Consensus 166 dg~IRVwdi~t-~ir~llrGH------------------------~qVriWD~~~g~pl~~lephdG~sV~SVaFl~aP~ 220 (1165)
.+.|.+||... ..|.|+..+ .+|++||..+|.. ..+..++| .+++++| +|+
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~-~~~~~~~~-~~~~~~~--spD 244 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR-EKVASFPG-MNGAPAF--SPD 244 (417)
T ss_pred cceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEeecCCC-CccceEE--CCC
Confidence 34688888876 556555433 2389999988863 33444444 5778899 566
Q ss_pred CCCceEEEeec--CCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEecc--C
Q 001070 221 QAGHIILVTAG--PLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANA--K 296 (1165)
Q Consensus 221 ~~d~~~lvtsG--slnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~--~ 296 (1165)
+.. |+.+. ..+.+|.+|++.++ .. +.+.. +.....+...+|++++|+++.. .
T Consensus 245 g~~---l~~~~~~~~~~~i~~~d~~~~------------~~-~~l~~--------~~~~~~~~~~s~dg~~l~~~s~~~g 300 (417)
T TIGR02800 245 GSK---LAVSLSKDGNPDIYVMDLDGK------------QL-TRLTN--------GPGIDTEPSWSPDGKSIAFTSDRGG 300 (417)
T ss_pred CCE---EEEEECCCCCccEEEEECCCC------------CE-EECCC--------CCCCCCCEEECCCCCEEEEEECCCC
Confidence 533 43333 34456888887543 22 22221 1111223456799998765432 2
Q ss_pred CCcEEEEEeec
Q 001070 297 KNAIYSVHLGY 307 (1165)
Q Consensus 297 r~aIYalhl~~ 307 (1165)
...||.+.+.-
T Consensus 301 ~~~iy~~d~~~ 311 (417)
T TIGR02800 301 SPQIYMMDADG 311 (417)
T ss_pred CceEEEEECCC
Confidence 45899988763
No 202
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.99 E-value=0.055 Score=62.68 Aligned_cols=83 Identities=17% Similarity=0.361 Sum_probs=66.1
Q ss_pred cCceEEE-eec-CCcEEEEeCcc-hhhHhhcCCcc-----------------------EEEeecCCCceeEEecCCCCC-
Q 001070 156 NKHYVCY-GLK-GGNVRVLNLNT-ATRSLLRGHTK-----------------------IKIWEDSKVAPLIILKPHGGQ- 208 (1165)
Q Consensus 156 n~~yIay-G~k-dg~IRVwdi~t-~ir~llrGH~q-----------------------VriWD~~~g~pl~~lephdG~- 208 (1165)
++.|||| |.. .|.|+|||..+ .--.++.-|+. |||+.+.+|.-+-.|+ .|-
T Consensus 140 ~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR--RG~~ 217 (391)
T KOG2110|consen 140 ANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR--RGTY 217 (391)
T ss_pred CCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee--CCce
Confidence 4679999 333 59999999998 66668889998 9999999999888887 354
Q ss_pred --CcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcC
Q 001070 209 --PVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEE 246 (1165)
Q Consensus 209 --sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~ 246 (1165)
.+||++| .|+ .+||. +.+...||-|+-++...
T Consensus 218 ~~~IySL~F--s~d---s~~L~-~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 218 PVSIYSLSF--SPD---SQFLA-ASSNTETVHIFKLEKVS 251 (391)
T ss_pred eeEEEEEEE--CCC---CCeEE-EecCCCeEEEEEecccc
Confidence 8999999 344 45455 57789999999996653
No 203
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=94.94 E-value=0.098 Score=58.63 Aligned_cols=86 Identities=16% Similarity=0.316 Sum_probs=63.2
Q ss_pred EEEeecCCCceeEEecCCC-CCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEecc
Q 001070 188 IKIWEDSKVAPLIILKPHG-GQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLK 266 (1165)
Q Consensus 188 VriWD~~~g~pl~~lephd-G~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~ 266 (1165)
|+||.+..+..+-.|.... |.+|.-+++ .|-+++ ++.+++.||+|++||.- ..+|+++++-+
T Consensus 44 v~v~n~e~~r~~~~~~~~gh~~svdql~w--~~~~~d---~~atas~dk~ir~wd~r------------~~k~~~~i~~~ 106 (313)
T KOG1407|consen 44 VSVWNLERDRFRKELVYRGHTDSVDQLCW--DPKHPD---LFATASGDKTIRIWDIR------------SGKCTARIETK 106 (313)
T ss_pred eEEEEecchhhhhhhcccCCCcchhhhee--CCCCCc---ceEEecCCceEEEEEec------------cCcEEEEeecc
Confidence 9999988764433333221 339999999 688888 77789999999999984 44999999952
Q ss_pred CCCCCccccccEEEEEeecCCcEEEEeccCCCc
Q 001070 267 SSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNA 299 (1165)
Q Consensus 267 ~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~a 299 (1165)
+ +.++ +...|+++++.+.|.+...
T Consensus 107 ------~-eni~--i~wsp~g~~~~~~~kdD~i 130 (313)
T KOG1407|consen 107 ------G-ENIN--ITWSPDGEYIAVGNKDDRI 130 (313)
T ss_pred ------C-cceE--EEEcCCCCEEEEecCcccE
Confidence 2 3454 5678999999888866443
No 204
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.88 E-value=0.17 Score=61.32 Aligned_cols=113 Identities=15% Similarity=0.247 Sum_probs=76.1
Q ss_pred CCCCCCceEEEeecC-CCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccC
Q 001070 218 APNQAGHIILVTAGP-LNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAK 296 (1165)
Q Consensus 218 aP~~~d~~~lvtsGs-lnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~ 296 (1165)
-|+| + +|.|.+|- .-.++..+..... ...|+.+.+|. +.+||.|-..|.|+|+++|+..
T Consensus 454 EP~g-d-kF~vi~g~~~k~tvsfY~~e~~--------~~~~~lVk~~d----------k~~~N~vfwsPkG~fvvva~l~ 513 (698)
T KOG2314|consen 454 EPHG-D-KFAVISGNTVKNTVSFYAVETN--------IKKPSLVKELD----------KKFANTVFWSPKGRFVVVAALV 513 (698)
T ss_pred ccCC-C-eEEEEEccccccceeEEEeecC--------CCchhhhhhhc----------ccccceEEEcCCCcEEEEEEec
Confidence 3655 3 56666665 4457888877532 24577777776 6899999999999999999988
Q ss_pred --CCcEEEEEeecCCCccccccccccccccccceeeeeeccCCCCc--------------ceEEEEEeehhhhhhhccc
Q 001070 297 --KNAIYSVHLGYGNNSAATRIDYIAEFTVTMPVLSFTGTIDPPSE--------------HIIKLYCVQTQAIQQYSLN 359 (1165)
Q Consensus 297 --r~aIYalhl~~g~~~~~~r~dyiaeF~v~~PILSft~~~d~~ge--------------~~vq~yCvQtqAIQqy~l~ 359 (1165)
+-.+|++-.+| ....++..+..|..+ .+.+||.|. ..-+||-.|-.=|++--|+
T Consensus 514 s~~g~l~F~D~~~---a~~k~~~~~eh~~at------~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll~~~~i~ 583 (698)
T KOG2314|consen 514 SRRGDLEFYDTDY---ADLKDTASPEHFAAT------EVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLLKEDIID 583 (698)
T ss_pred ccccceEEEecch---hhhhhccCccccccc------cceECCCCCEEEEeeehhhhccccceEEEEeecHHHHHHHHH
Confidence 77888877776 112333333333322 345677443 3478888888888877665
No 205
>PRK05137 tolB translocation protein TolB; Provisional
Probab=94.65 E-value=0.22 Score=58.72 Aligned_cols=111 Identities=10% Similarity=0.148 Sum_probs=67.1
Q ss_pred CcEEEEeCcc-hhhHhhcCCcc-------------------------EEEeecCCCceeEEecCCCCCCcceeEeecCCC
Q 001070 167 GNVRVLNLNT-ATRSLLRGHTK-------------------------IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPN 220 (1165)
Q Consensus 167 g~IRVwdi~t-~ir~llrGH~q-------------------------VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~ 220 (1165)
++|.|||... ..+.+. +|.. |++||..+|.. .++..+.| .+++.+| +||
T Consensus 182 ~~l~~~d~dg~~~~~lt-~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g-~~~~~~~--SPD 256 (435)
T PRK05137 182 KRLAIMDQDGANVRYLT-DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPG-MTFAPRF--SPD 256 (435)
T ss_pred eEEEEECCCCCCcEEEe-cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCC-cccCcEE--CCC
Confidence 4899999987 444443 4432 88999988864 44555544 6778889 566
Q ss_pred CCCceEEEeecCCCc--eEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccC--
Q 001070 221 QAGHIILVTAGPLNR--EVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAK-- 296 (1165)
Q Consensus 221 ~~d~~~lvtsGslnr--tIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~-- 296 (1165)
|.. |+.+.+.+. .|-+|+++++ .+.+ |.. +.........+||+++|+.+..+
T Consensus 257 G~~---la~~~~~~g~~~Iy~~d~~~~------------~~~~-Lt~--------~~~~~~~~~~spDG~~i~f~s~~~g 312 (435)
T PRK05137 257 GRK---VVMSLSQGGNTDIYTMDLRSG------------TTTR-LTD--------SPAIDTSPSYSPDGSQIVFESDRSG 312 (435)
T ss_pred CCE---EEEEEecCCCceEEEEECCCC------------ceEE-ccC--------CCCccCceeEcCCCCEEEEEECCCC
Confidence 533 544444444 4555566443 3432 332 12222346779999977765433
Q ss_pred CCcEEEEEee
Q 001070 297 KNAIYSVHLG 306 (1165)
Q Consensus 297 r~aIYalhl~ 306 (1165)
...||.+.++
T Consensus 313 ~~~Iy~~d~~ 322 (435)
T PRK05137 313 SPQLYVMNAD 322 (435)
T ss_pred CCeEEEEECC
Confidence 3579988765
No 206
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=94.61 E-value=0.069 Score=66.77 Aligned_cols=42 Identities=36% Similarity=0.582 Sum_probs=37.5
Q ss_pred eee--cCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc------------------EEEeecC
Q 001070 153 IAV--NKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK------------------IKIWEDS 194 (1165)
Q Consensus 153 IAV--n~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q------------------VriWD~~ 194 (1165)
.|| |..+||.++-|..||||-..+ .--++|+||++ +||||.+
T Consensus 238 lavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 238 LAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRASSSDDGTCRIWDAR 300 (1113)
T ss_pred hccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccccCCCCCceEecccc
Confidence 667 478899999999999999999 88899999995 8999876
No 207
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=94.56 E-value=0.84 Score=52.37 Aligned_cols=150 Identities=12% Similarity=0.203 Sum_probs=89.6
Q ss_pred eecCceEEE-eecCCcEEEEeCcchhhHh-----hcCCcc------------------------EEEeecC--CCc--ee
Q 001070 154 AVNKHYVCY-GLKGGNVRVLNLNTATRSL-----LRGHTK------------------------IKIWEDS--KVA--PL 199 (1165)
Q Consensus 154 AVn~~yIay-G~kdg~IRVwdi~t~ir~l-----lrGH~q------------------------VriWD~~--~g~--pl 199 (1165)
.-||+|+.. -+....|++|+++..-..| +.-... |-+|+.. +|. .+
T Consensus 152 ~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~ 231 (345)
T PF10282_consen 152 SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEI 231 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEE
Confidence 335777654 5556789999998632111 111111 5566555 442 22
Q ss_pred EEecC----CCCC-CcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccc
Q 001070 200 IILKP----HGGQ-PVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVE 274 (1165)
Q Consensus 200 ~~lep----hdG~-sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~ 274 (1165)
+++.. ..|. ....+++. +|++||.++.-.+.+|-+|+++...|. .+-++++.. .
T Consensus 232 ~~~~~~~~~~~~~~~~~~i~is-----pdg~~lyvsnr~~~sI~vf~~d~~~g~--------l~~~~~~~~--------~ 290 (345)
T PF10282_consen 232 QTISTLPEGFTGENAPAEIAIS-----PDGRFLYVSNRGSNSISVFDLDPATGT--------LTLVQTVPT--------G 290 (345)
T ss_dssp EEEESCETTSCSSSSEEEEEE------TTSSEEEEEECTTTEEEEEEECTTTTT--------EEEEEEEEE--------S
T ss_pred EEeeeccccccccCCceeEEEe-----cCCCEEEEEeccCCEEEEEEEecCCCc--------eEEEEEEeC--------C
Confidence 22222 2233 56667773 555779999999999999999554331 233334332 2
Q ss_pred cccEEEEEeecCCcEEEEeccCCCcEEEEEeecCCCccccccccccc-cccccce
Q 001070 275 EAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGYGNNSAATRIDYIAE-FTVTMPV 328 (1165)
Q Consensus 275 ~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~g~~~~~~r~dyiae-F~v~~PI 328 (1165)
..+-..++++|+++||++||...+.|.++.++.... ++.++.. ..+..|.
T Consensus 291 G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG----~l~~~~~~~~~~~p~ 341 (345)
T PF10282_consen 291 GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTG----KLTPVGSSVPIPSPV 341 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT----EEEEEEEEEESSSEE
T ss_pred CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCC----cEEEecccccCCCCE
Confidence 345567889999999999999999999999975443 4444443 4555543
No 208
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=94.52 E-value=0.029 Score=67.47 Aligned_cols=81 Identities=17% Similarity=0.296 Sum_probs=60.1
Q ss_pred ceEEEeecCCcEEEEeCcc--------hhh-HhhcCCcc----------------------EEEe------ecCCC----
Q 001070 158 HYVCYGLKGGNVRVLNLNT--------ATR-SLLRGHTK----------------------IKIW------EDSKV---- 196 (1165)
Q Consensus 158 ~yIayG~kdg~IRVwdi~t--------~ir-~llrGH~q----------------------VriW------D~~~g---- 196 (1165)
--|+++.+||.|.+|+++. ..+ ..||||+. ||-| |....
T Consensus 307 p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~ 386 (577)
T KOG0642|consen 307 PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPS 386 (577)
T ss_pred CeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcc
Confidence 3567899999999999931 122 38999999 9999 43333
Q ss_pred ceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCc
Q 001070 197 APLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASE 245 (1165)
Q Consensus 197 ~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~ 245 (1165)
.....|.|| ++.|..++|...+++ +++.|.|.|+++|+...+
T Consensus 387 vl~~~l~Gh-tdavw~l~~s~~~~~------Llscs~DgTvr~w~~~~~ 428 (577)
T KOG0642|consen 387 VLSGTLLGH-TDAVWLLALSSTKDR------LLSCSSDGTVRLWEPTEE 428 (577)
T ss_pred hhccceecc-ccceeeeeecccccc------eeeecCCceEEeeccCCc
Confidence 246778888 459999999533433 447999999999997544
No 209
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.51 E-value=0.84 Score=53.41 Aligned_cols=127 Identities=9% Similarity=0.089 Sum_probs=72.2
Q ss_pred eeecCceEEEeecC---CcEEEEeCcc-hhhHh--hcCCcc----------------------EEEeecCCCceeEEecC
Q 001070 153 IAVNKHYVCYGLKG---GNVRVLNLNT-ATRSL--LRGHTK----------------------IKIWEDSKVAPLIILKP 204 (1165)
Q Consensus 153 IAVn~~yIayG~kd---g~IRVwdi~t-~ir~l--lrGH~q----------------------VriWD~~~g~pl~~lep 204 (1165)
.+-||++|+|...+ .+|.+||+.+ ..+.+ +.|+.. |++||..++. +.++..
T Consensus 206 wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~ 284 (430)
T PRK00178 206 WSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ-LSRVTN 284 (430)
T ss_pred ECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC-eEEccc
Confidence 55678888886543 4799999987 33332 234332 7777888775 455554
Q ss_pred CCCCCcceeEeecCCCCCCceEEEeecCC--CceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEE
Q 001070 205 HGGQPVNSAQYLTAPNQAGHIILVTAGPL--NREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVV 282 (1165)
Q Consensus 205 hdG~sV~SVaFl~aP~~~d~~~lvtsGsl--nrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~ 282 (1165)
+.+ -+.+..| +||+.. ++.+... +..|-+|++.++ .+ +.+.+. ..+.....
T Consensus 285 ~~~-~~~~~~~--spDg~~---i~f~s~~~g~~~iy~~d~~~g------------~~-~~lt~~--------~~~~~~~~ 337 (430)
T PRK00178 285 HPA-IDTEPFW--GKDGRT---LYFTSDRGGKPQIYKVNVNGG------------RA-ERVTFV--------GNYNARPR 337 (430)
T ss_pred CCC-CcCCeEE--CCCCCE---EEEEECCCCCceEEEEECCCC------------CE-EEeecC--------CCCccceE
Confidence 433 4567788 466532 3333322 335666665433 22 222221 11222457
Q ss_pred eecCCcEEEEeccCC--CcEEEEEeec
Q 001070 283 VLSQAGLLLFANAKK--NAIYSVHLGY 307 (1165)
Q Consensus 283 ~~p~a~~ilLan~~r--~aIYalhl~~ 307 (1165)
++|++++|++..... ..||.+-+.-
T Consensus 338 ~Spdg~~i~~~~~~~~~~~l~~~dl~t 364 (430)
T PRK00178 338 LSADGKTLVMVHRQDGNFHVAAQDLQR 364 (430)
T ss_pred ECCCCCEEEEEEccCCceEEEEEECCC
Confidence 899999998887543 3466666553
No 210
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=94.33 E-value=0.21 Score=57.74 Aligned_cols=140 Identities=16% Similarity=0.229 Sum_probs=87.3
Q ss_pred CcccccccccCCCcccccccEeeecCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc-----------------------
Q 001070 132 QLEVNPITKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------- 187 (1165)
Q Consensus 132 qlev~pIt~Y~sd~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------- 187 (1165)
.|...+++-|... ++ .-+|.|+.+|.||++|-.| ..-.-|+||..
T Consensus 26 ~Lk~~~q~~~~~~------~e-----~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG 94 (376)
T KOG1188|consen 26 CLKYDIQEQVKDG------FE-----TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDG 94 (376)
T ss_pred eeeccchhhhccC------cc-----eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCC
Confidence 4555555555544 44 4457999999999999999 55668888887
Q ss_pred -EEEeecCCC--ceeEEecCCCCCCcceeEeecCCCCCCceEEEeecC----CCceEEEeEccCcCCCCCCCCCCCcceE
Q 001070 188 -IKIWEDSKV--APLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGP----LNREVKLWASASEEGWSLPTHAESWKCT 260 (1165)
Q Consensus 188 -VriWD~~~g--~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGs----lnrtIKLW~~a~~~~~~~~~~~~~w~C~ 260 (1165)
||+||+|.. .++..|+.|-|.+-.|++- +-.++ ++..|. -|--|.|||.-. -
T Consensus 95 ~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~----nck~~--ii~~GtE~~~s~A~v~lwDvR~---------------~ 153 (376)
T KOG1188|consen 95 TVRLWDIRSQAESARISWTQQSGTPFICLDL----NCKKN--IIACGTELTRSDASVVLWDVRS---------------E 153 (376)
T ss_pred eEEEEEeecchhhhheeccCCCCCcceEeec----cCcCC--eEEeccccccCceEEEEEEecc---------------c
Confidence 999999985 4677777665555444443 21232 344554 466789999622 2
Q ss_pred EEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEee
Q 001070 261 QTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLG 306 (1165)
Q Consensus 261 QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~ 306 (1165)
|++-. .-.+ .|.|=+-+|.++|+--=+||+-..--.|-.+-+.
T Consensus 154 qq~l~-~~~e--SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 154 QQLLR-QLNE--SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred cchhh-hhhh--hccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 22110 0011 2555566888888887777776555444444443
No 211
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=94.32 E-value=0.074 Score=66.14 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=7.1
Q ss_pred ehhhhhhhcccccccc
Q 001070 349 QTQAIQQYSLNLFQCL 364 (1165)
Q Consensus 349 QtqAIQqy~l~~~~c~ 364 (1165)
|+-+|+...+++-.|+
T Consensus 466 h~~dLk~L~~~~ve~L 481 (830)
T KOG1923|consen 466 HPLDLKALSLEPVELL 481 (830)
T ss_pred hhccccccCCcHHHHH
Confidence 3334444444444443
No 212
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=94.26 E-value=0.29 Score=56.37 Aligned_cols=90 Identities=13% Similarity=0.205 Sum_probs=64.5
Q ss_pred cccEeeecCceEEEeecCCcEEEEeCcc-------hhhHhhcCCcc----------------------------------
Q 001070 149 IGRQIAVNKHYVCYGLKGGNVRVLNLNT-------ATRSLLRGHTK---------------------------------- 187 (1165)
Q Consensus 149 ~GR~IAVn~~yIayG~kdg~IRVwdi~t-------~ir~llrGH~q---------------------------------- 187 (1165)
-|=.-+.||+-|.+-.+|...+||++-. ..+..+.-|.-
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 3555677899999999999999999863 34556666665
Q ss_pred --EEEeecCCCceeEEecCCCC----CCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCc
Q 001070 188 --IKIWEDSKVAPLIILKPHGG----QPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASE 245 (1165)
Q Consensus 188 --VriWD~~~g~pl~~lephdG----~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~ 245 (1165)
|++||.-+|..-..++.+|- ..-.|++| +|||.. |++ | -+|+||++|++-+
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~F--s~DGeq---lfa-G-ykrcirvFdt~Rp 189 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQF--SPDGEQ---LFA-G-YKRCIRVFDTSRP 189 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEe--cCCCCe---Eee-c-ccceEEEeeccCC
Confidence 66677666665555555542 16679999 566654 663 4 8999999998544
No 213
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.24 E-value=0.12 Score=59.08 Aligned_cols=109 Identities=21% Similarity=0.356 Sum_probs=67.6
Q ss_pred cccccCCCcccccccEeeecCceEEEeecCCcEEEEeCcchhhHhhcCCccEEEeecCCCceeEEecCCCCC--CcceeE
Q 001070 137 PITKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNTATRSLLRGHTKIKIWEDSKVAPLIILKPHGGQ--PVNSAQ 214 (1165)
Q Consensus 137 pIt~Y~sd~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t~ir~llrGH~qVriWD~~~g~pl~~lephdG~--sV~SVa 214 (1165)
||+..-|-| -.||-. ..||++.+|| ||||++....-.++..-.- ==+.-+-.+|+...-||+| .|.+|.
T Consensus 225 pI~di~wAP--n~Gr~y----~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~--~~~~~~~l~v~~vs~~~~H~~~VWrv~ 295 (361)
T KOG2445|consen 225 PIRDISWAP--NIGRSY----HLLAVATKDG-VRIFKVKVARSAIEEEEVL--APDLMTDLPVEKVSELDDHNGEVWRVR 295 (361)
T ss_pred cceeeeecc--ccCCce----eeEEEeecCc-EEEEEEeeccchhhhhccc--CCCCccccceEEeeeccCCCCceEEEE
Confidence 555555555 235543 3478899999 9999999744434321110 0000011345555545554 799999
Q ss_pred eecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCC
Q 001070 215 YLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSA 269 (1165)
Q Consensus 215 Fl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~ 269 (1165)
| ..-+- +++|...|.++|||-.... ..|+|+--|+...+.
T Consensus 296 w-----NmtGt-iLsStGdDG~VRLWkany~---------n~~kC~sv~~~e~~~ 335 (361)
T KOG2445|consen 296 W-----NMTGT-ILSSTGDDGCVRLWKANYN---------NLWKCTSVLKAEGSV 335 (361)
T ss_pred E-----eeeee-EEeecCCCceeeehhhhhh---------hhheeeeEEeccCCC
Confidence 9 23345 3556779999999997444 468999999986664
No 214
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=94.17 E-value=0.082 Score=61.89 Aligned_cols=156 Identities=19% Similarity=0.264 Sum_probs=97.7
Q ss_pred ceEEecccCCCCCCCCCCcccccccccCCCccccc----ccEeeecCceEEEeecCCcEEEEeCc--------c------
Q 001070 115 YVAYDVDAVEEGREPTQQLEVNPITKYGSDPELLI----GRQIAVNKHYVCYGLKGGNVRVLNLN--------T------ 176 (1165)
Q Consensus 115 ~~~~dVd~~~~ge~~~pqlev~pIt~Y~sd~~~~~----GR~IAVn~~yIayG~kdg~IRVwdi~--------t------ 176 (1165)
-+++-|++..+|+.- ...+|-+.-.... +=.+.-+|..||+|.-+|.|-+|=.+ +
T Consensus 38 iriW~v~r~~~~~~~-------~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~k 110 (434)
T KOG1009|consen 38 IRIWKVNRSEPGGGD-------MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNK 110 (434)
T ss_pred eeeeeeeecCCCCCc-------eeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCc
Confidence 345778888887753 3444544431111 11122347899999999999999776 2
Q ss_pred ---hhhHhhcCCcc----------------------EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeec
Q 001070 177 ---ATRSLLRGHTK----------------------IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAG 231 (1165)
Q Consensus 177 ---~ir~llrGH~q----------------------VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsG 231 (1165)
.++..++||-. +++||+++|..+..+..| ++-|.-||| .|.+.. |.+-
T Consensus 111 e~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh-~~yvqgvaw--Dpl~qy----v~s~ 183 (434)
T KOG1009|consen 111 EKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH-EHYVQGVAW--DPLNQY----VASK 183 (434)
T ss_pred cceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc-ccccceeec--chhhhh----hhhh
Confidence 34558999988 999999999999999887 568999999 555433 3356
Q ss_pred CCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCC------------CCccccccEEEEEeecCCcEEEEe
Q 001070 232 PLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSA------------KPRVEEAFFNQVVVLSQAGLLLFA 293 (1165)
Q Consensus 232 slnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~------------~~~~~~aff~sV~~~p~a~~ilLa 293 (1165)
+-||..+...+... ....|+++-...+.. .-..-+.||--..++|+|.++|--
T Consensus 184 s~dr~~~~~~~~~~---------~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtP 248 (434)
T KOG1009|consen 184 SSDRHPEGFSAKLK---------QVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTP 248 (434)
T ss_pred ccCcccceeeeeee---------eeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcc
Confidence 66664444443222 112333321111110 001235688889999999988753
No 215
>PRK02889 tolB translocation protein TolB; Provisional
Probab=94.12 E-value=0.31 Score=57.49 Aligned_cols=122 Identities=10% Similarity=0.180 Sum_probs=70.5
Q ss_pred EEEeec---CCcEEEEeCcc-hhhHhhcCCcc------------------------EEEeecCCCceeEEecCCCCCCcc
Q 001070 160 VCYGLK---GGNVRVLNLNT-ATRSLLRGHTK------------------------IKIWEDSKVAPLIILKPHGGQPVN 211 (1165)
Q Consensus 160 IayG~k---dg~IRVwdi~t-~ir~llrGH~q------------------------VriWD~~~g~pl~~lephdG~sV~ 211 (1165)
|+|-.+ ...|.+||... ..|.++.+.+- |++||..+|.. .++....| .+.
T Consensus 166 iayv~~~~~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-~~l~~~~g-~~~ 243 (427)
T PRK02889 166 IAYVIKTGNRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-RVVANFKG-SNS 243 (427)
T ss_pred EEEEEccCCccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-EEeecCCC-Ccc
Confidence 445443 34788888876 44444433222 88999988864 33443434 456
Q ss_pred eeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEE
Q 001070 212 SAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLL 291 (1165)
Q Consensus 212 SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~il 291 (1165)
+++| +|||. .|+.+.+.+....||.+....+ . .+.|.. +.....+...+||+++|+
T Consensus 244 ~~~~--SPDG~---~la~~~~~~g~~~Iy~~d~~~~----------~-~~~lt~--------~~~~~~~~~wSpDG~~l~ 299 (427)
T PRK02889 244 APAW--SPDGR---TLAVALSRDGNSQIYTVNADGS----------G-LRRLTQ--------SSGIDTEPFFSPDGRSIY 299 (427)
T ss_pred ceEE--CCCCC---EEEEEEccCCCceEEEEECCCC----------C-cEECCC--------CCCCCcCeEEcCCCCEEE
Confidence 7889 46653 3554556666777777644311 1 233332 112233456899999776
Q ss_pred E-ecc-CCCcEEEEEeec
Q 001070 292 F-ANA-KKNAIYSVHLGY 307 (1165)
Q Consensus 292 L-an~-~r~aIYalhl~~ 307 (1165)
. +|. ....||.+.++-
T Consensus 300 f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 300 FTSDRGGAPQIYRMPASG 317 (427)
T ss_pred EEecCCCCcEEEEEECCC
Confidence 5 443 356899987653
No 216
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.08 E-value=0.03 Score=69.08 Aligned_cols=64 Identities=27% Similarity=0.358 Sum_probs=47.3
Q ss_pred EEEeecCCC-ceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEec
Q 001070 188 IKIWEDSKV-APLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDL 265 (1165)
Q Consensus 188 VriWD~~~g-~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~ 265 (1165)
|+|||++.| .|+..+++|- -.||+++|.-.-++ ++-+.+.|+|+|.|+.+.. .+-|+-++|-.|
T Consensus 182 i~vwd~r~gs~pl~s~K~~v-s~vn~~~fnr~~~s-----~~~s~~~d~tvkfw~y~kS--------t~e~~~~vtt~~ 246 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGHV-SSVNSIDFNRFKYS-----EIMSSSNDGTVKFWDYSKS--------TTESKRTVTTNF 246 (1081)
T ss_pred eEEEeccCCCcceEEecccc-eeeehHHHhhhhhh-----hhcccCCCCceeeeccccc--------ccccceeccccC
Confidence 999999986 6899999763 49999999633333 2336889999999997543 234666666665
No 217
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=94.01 E-value=0.6 Score=54.69 Aligned_cols=135 Identities=15% Similarity=0.243 Sum_probs=75.8
Q ss_pred ccccEeeecCceEEEeecCCcEEEEeCcc--hhhHhhcCCcc---------------------EEEeecCCCceeEEecC
Q 001070 148 LIGRQIAVNKHYVCYGLKGGNVRVLNLNT--ATRSLLRGHTK---------------------IKIWEDSKVAPLIILKP 204 (1165)
Q Consensus 148 ~~GR~IAVn~~yIayG~kdg~IRVwdi~t--~ir~llrGH~q---------------------VriWD~~~g~pl~~lep 204 (1165)
..+.-++-||+|+....+||.|.|||+.+ .++.+-.|-.. |.|||.++..++.+..-
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~ 118 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT 118 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence 34455677899888888999999999998 45555555544 88999999888887753
Q ss_pred C----CCC--CcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccE
Q 001070 205 H----GGQ--PVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFF 278 (1165)
Q Consensus 205 h----dG~--sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff 278 (1165)
. ++. .|..+.. +|+++.+ +++-- -.. +||-++... . ...-+.+++- ..|.
T Consensus 119 ~~~~~~~~~~Rv~aIv~--s~~~~~f--Vv~lk-d~~--~I~vVdy~d-------~-~~~~~~~i~~---------g~~~ 174 (369)
T PF02239_consen 119 GGMPVDGPESRVAAIVA--SPGRPEF--VVNLK-DTG--EIWVVDYSD-------P-KNLKVTTIKV---------GRFP 174 (369)
T ss_dssp -EE-TTTS---EEEEEE---SSSSEE--EEEET-TTT--EEEEEETTT-------S-SCEEEEEEE-----------TTE
T ss_pred ccccccccCCCceeEEe--cCCCCEE--EEEEc-cCC--eEEEEEecc-------c-cccceeeecc---------cccc
Confidence 3 111 2333433 6776653 33312 222 455443221 0 1122234431 2344
Q ss_pred EEEEeecCCcEEEEeccCCCcEEEEEee
Q 001070 279 NQVVVLSQAGLLLFANAKKNAIYSVHLG 306 (1165)
Q Consensus 279 ~sV~~~p~a~~ilLan~~r~aIYalhl~ 306 (1165)
.-..++|+++|+++|.-..|.|-++...
T Consensus 175 ~D~~~dpdgry~~va~~~sn~i~viD~~ 202 (369)
T PF02239_consen 175 HDGGFDPDGRYFLVAANGSNKIAVIDTK 202 (369)
T ss_dssp EEEEE-TTSSEEEEEEGGGTEEEEEETT
T ss_pred cccccCcccceeeecccccceeEEEeec
Confidence 5677899999999987667766666544
No 218
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=93.89 E-value=0.65 Score=61.33 Aligned_cols=78 Identities=17% Similarity=0.127 Sum_probs=48.2
Q ss_pred cceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCC------CCccccccEEEEEe
Q 001070 210 VNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSA------KPRVEEAFFNQVVV 283 (1165)
Q Consensus 210 V~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~------~~~~~~aff~sV~~ 283 (1165)
.+.|+| .+ ++. +.++...|++|++||.+++ .|. |+-+.... ...++-.....|++
T Consensus 806 P~Gvav--d~---dG~-LYVADs~N~rIrviD~~tg------------~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIav 866 (1057)
T PLN02919 806 PLGVLC--AK---DGQ-IYVADSYNHKIKKLDPATK------------RVT-TLAGTGKAGFKDGKALKAQLSEPAGLAL 866 (1057)
T ss_pred CceeeE--eC---CCc-EEEEECCCCEEEEEECCCC------------eEE-EEeccCCcCCCCCcccccccCCceEEEE
Confidence 455666 23 344 3445788999999998654 333 22221110 00011123457899
Q ss_pred ecCCcEEEEeccCCCcEEEEEeec
Q 001070 284 LSQAGLLLFANAKKNAIYSVHLGY 307 (1165)
Q Consensus 284 ~p~a~~ilLan~~r~aIYalhl~~ 307 (1165)
++++. |++||...|.|..+.+..
T Consensus 867 d~dG~-lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 867 GENGR-LFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred eCCCC-EEEEECCCCEEEEEECCC
Confidence 99987 788999999999888764
No 219
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.83 E-value=0.11 Score=66.55 Aligned_cols=82 Identities=20% Similarity=0.347 Sum_probs=50.9
Q ss_pred CceEEEeecCCcEEEEeCcchhh----HhhcCCcc-------------------------EEEeecCCC---ceeEEecC
Q 001070 157 KHYVCYGLKGGNVRVLNLNTATR----SLLRGHTK-------------------------IKIWEDSKV---APLIILKP 204 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~t~ir----~llrGH~q-------------------------VriWD~~~g---~pl~~lep 204 (1165)
|.-|+.|.-||.|||+|....-+ ..-|-|.. |++||.|.- ..+.+-.+
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH 1300 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec
Confidence 67777999999999999987222 23455554 999999863 11111111
Q ss_pred C-CCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCc
Q 001070 205 H-GGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASE 245 (1165)
Q Consensus 205 h-dG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~ 245 (1165)
- -|-.+.++.- ....+ +|++|+. +.||||++++.
T Consensus 1301 ~~yGs~lTal~V---H~hap---iiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1301 WEYGSALTALTV---HEHAP---IIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred cccCccceeeee---ccCCC---eeeecCc-ceEEEEecChh
Confidence 1 0322333322 22223 5888988 99999999765
No 220
>PRK01029 tolB translocation protein TolB; Provisional
Probab=93.64 E-value=1.6 Score=51.94 Aligned_cols=83 Identities=10% Similarity=0.059 Sum_probs=47.0
Q ss_pred eEEecCCCCCCcceeEeecCCCCCCceEEEe-ecC-CCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccc
Q 001070 199 LIILKPHGGQPVNSAQYLTAPNQAGHIILVT-AGP-LNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEA 276 (1165)
Q Consensus 199 l~~lephdG~sV~SVaFl~aP~~~d~~~lvt-sGs-lnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~a 276 (1165)
..++..+ +..+.+.+| +|||.. |+. +.. ....|.+||++++ ++.+-... ..
T Consensus 319 ~~~lt~~-~~~~~~p~w--SPDG~~---Laf~~~~~g~~~I~v~dl~~g------------~~~~Lt~~---------~~ 371 (428)
T PRK01029 319 PRLLTKK-YRNSSCPAW--SPDGKK---IAFCSVIKGVRQICVYDLATG------------RDYQLTTS---------PE 371 (428)
T ss_pred eEEeccC-CCCccceeE--CCCCCE---EEEEEcCCCCcEEEEEECCCC------------CeEEccCC---------CC
Confidence 3444433 235677788 566532 332 222 2457999998654 44322211 11
Q ss_pred cEEEEEeecCCcEEEEecc--CCCcEEEEEeecC
Q 001070 277 FFNQVVVLSQAGLLLFANA--KKNAIYSVHLGYG 308 (1165)
Q Consensus 277 ff~sV~~~p~a~~ilLan~--~r~aIYalhl~~g 308 (1165)
.+.....+|++++|+.+.. .+..||.+.+.-+
T Consensus 372 ~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 372 NKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 2234677899998886543 3467998888643
No 221
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=93.63 E-value=10 Score=42.20 Aligned_cols=76 Identities=22% Similarity=0.337 Sum_probs=44.6
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHHHHH----------HHHHHhHHHHHHHHHHHHHhHH
Q 001070 740 QVIAMQD-MLNQLMTMQKELQKQMSNLVTLPVTKEGRRLEASLGRGIE----------KAVKASTDALWARFHEENARNE 808 (1165)
Q Consensus 740 q~~~mq~-~l~ql~~~qke~qkqm~~~v~~plsKE~kklE~~L~~~ie----------K~lk~eld~L~~R~dEerr~rE 808 (1165)
++..|++ .-+++..+...+++.+.. +.+.+..||..|..+.. ..|.++|..|..-|+.++..|.
T Consensus 71 ~i~~~~~~v~~~~~~~~~~~~~~l~~-----L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~ 145 (247)
T PF06705_consen 71 QINNMQERVENQISEKQEQLQSRLDS-----LNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNERE 145 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555 334444445555555544 56667777666554433 3567777888888888887775
Q ss_pred HHHHHHHHHHHHHHHH
Q 001070 809 KLLRDRTQQITGLITN 824 (1165)
Q Consensus 809 aa~~~RQ~qLL~LVS~ 824 (1165)
+|...|++.+.+
T Consensus 146 ----erE~~i~krl~e 157 (247)
T PF06705_consen 146 ----EREENILKRLEE 157 (247)
T ss_pred ----HHHHHHHHHHHH
Confidence 344455555555
No 222
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=93.56 E-value=0.4 Score=56.12 Aligned_cols=96 Identities=15% Similarity=0.216 Sum_probs=64.0
Q ss_pred hcCCccEEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEE
Q 001070 182 LRGHTKIKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQ 261 (1165)
Q Consensus 182 lrGH~qVriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~Q 261 (1165)
.+|...|.|.|..+...+.+++.. |..-.+++| +||| +++.+++ .|.+|-+||+.+. +++.
T Consensus 12 ~~~~~~v~viD~~t~~~~~~i~~~-~~~h~~~~~--s~Dg---r~~yv~~-rdg~vsviD~~~~------------~~v~ 72 (369)
T PF02239_consen 12 ERGSGSVAVIDGATNKVVARIPTG-GAPHAGLKF--SPDG---RYLYVAN-RDGTVSVIDLATG------------KVVA 72 (369)
T ss_dssp EGGGTEEEEEETTT-SEEEEEE-S-TTEEEEEE---TT-S---SEEEEEE-TTSEEEEEETTSS------------SEEE
T ss_pred ecCCCEEEEEECCCCeEEEEEcCC-CCceeEEEe--cCCC---CEEEEEc-CCCeEEEEECCcc------------cEEE
Confidence 345555777777777778888743 333345677 4544 5566554 5789999999555 8999
Q ss_pred EEeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEe
Q 001070 262 TLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHL 305 (1165)
Q Consensus 262 TLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl 305 (1165)
++.. +.. -..+++++|++||+++|...+.|.++-.
T Consensus 73 ~i~~-------G~~--~~~i~~s~DG~~~~v~n~~~~~v~v~D~ 107 (369)
T PF02239_consen 73 TIKV-------GGN--PRGIAVSPDGKYVYVANYEPGTVSVIDA 107 (369)
T ss_dssp EEE--------SSE--EEEEEE--TTTEEEEEEEETTEEEEEET
T ss_pred EEec-------CCC--cceEEEcCCCCEEEEEecCCCceeEecc
Confidence 9985 222 3478999999999999999999888754
No 223
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=93.47 E-value=0.22 Score=57.61 Aligned_cols=132 Identities=23% Similarity=0.311 Sum_probs=84.5
Q ss_pred ccccEeeecCceEEEeecCCcEEEEeCcch----------------hhH--hhcCCcc----------EEEeecCCCce-
Q 001070 148 LIGRQIAVNKHYVCYGLKGGNVRVLNLNTA----------------TRS--LLRGHTK----------IKIWEDSKVAP- 198 (1165)
Q Consensus 148 ~~GR~IAVn~~yIayG~kdg~IRVwdi~t~----------------ir~--llrGH~q----------VriWD~~~g~p- 198 (1165)
++-.|+|.-+..+.-|.++|.|-++|+..+ +.. +|.--.| |++||.|--.+
T Consensus 255 VfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~ 334 (425)
T KOG2695|consen 255 VFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCK 334 (425)
T ss_pred HHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcc
Confidence 455678887888889999999999998764 111 1221111 99999886544
Q ss_pred --eEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccc
Q 001070 199 --LIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEA 276 (1165)
Q Consensus 199 --l~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~a 276 (1165)
|..+|+| |++-+++..-=.+.-.+++ ++..|--.+||.+..+ .-+-|+.|+-+.- +.
T Consensus 335 ~~V~qYeGH----vN~~a~l~~~v~~eeg~I~-s~GdDcytRiWsl~~g------------hLl~tipf~~s~~----e~ 393 (425)
T KOG2695|consen 335 KSVMQYEGH----VNLSAYLPAHVKEEEGSIF-SVGDDCYTRIWSLDSG------------HLLCTIPFPYSAS----EV 393 (425)
T ss_pred cceeeeecc----cccccccccccccccceEE-EccCeeEEEEEecccC------------ceeeccCCCCccc----cc
Confidence 9999988 7777776432122223344 5779999999998554 7777888855442 22
Q ss_pred cEEEEEeecC-------CcEEEEeccCCCcEEEE
Q 001070 277 FFNQVVVLSQ-------AGLLLFANAKKNAIYSV 303 (1165)
Q Consensus 277 ff~sV~~~p~-------a~~ilLan~~r~aIYal 303 (1165)
-+-+|+.+.+ .||+| +.|.+||++
T Consensus 394 d~~sv~~~sr~~k~~~g~G~ll---~~re~Ly~f 424 (425)
T KOG2695|consen 394 DIPSVAFDSRLGKARGGPGLLL---AVREDLYCF 424 (425)
T ss_pred cccceehhcccccccCCCeeEe---eeccceecc
Confidence 3335554332 23444 356677764
No 224
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=93.30 E-value=0.19 Score=60.22 Aligned_cols=76 Identities=17% Similarity=0.219 Sum_probs=52.6
Q ss_pred CCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecC
Q 001070 207 GQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQ 286 (1165)
Q Consensus 207 G~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~ 286 (1165)
|++|.-+-| .+..+||+..++-|.++-|||..+.+-. |+-+. .|.|-+--|+..|.
T Consensus 164 gqsvRll~y-----s~skr~lL~~asd~G~VtlwDv~g~sp~----------------~~~~~---~HsAP~~gicfsps 219 (673)
T KOG4378|consen 164 GQSVRLLRY-----SPSKRFLLSIASDKGAVTLWDVQGMSPI----------------FHASE---AHSAPCRGICFSPS 219 (673)
T ss_pred CCeEEEeec-----ccccceeeEeeccCCeEEEEeccCCCcc----------------cchhh---hccCCcCcceecCC
Confidence 344544444 2566889999999999999998665311 11111 47777778888899
Q ss_pred CcEEEEeccCCCcEEEEEee
Q 001070 287 AGLLLFANAKKNAIYSVHLG 306 (1165)
Q Consensus 287 a~~ilLan~~r~aIYalhl~ 306 (1165)
...||++=-.-.-||..-+.
T Consensus 220 ne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 220 NEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred ccceEEEecccceEEEeecc
Confidence 99888887777777766555
No 225
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=93.01 E-value=0.48 Score=53.97 Aligned_cols=96 Identities=18% Similarity=0.289 Sum_probs=61.7
Q ss_pred CCcccccccEeee----cCceEEEeecCCcEEEEeCcc--hhhH-hh----cCCcc-----------------------E
Q 001070 143 SDPELLIGRQIAV----NKHYVCYGLKGGNVRVLNLNT--ATRS-LL----RGHTK-----------------------I 188 (1165)
Q Consensus 143 sd~~~~~GR~IAV----n~~yIayG~kdg~IRVwdi~t--~ir~-ll----rGH~q-----------------------V 188 (1165)
..+-..+||.--| |+.-|+.-. |..|-+||++. .+.. ++ .+|++ +
T Consensus 117 ~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl 195 (370)
T KOG1007|consen 117 SLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTL 195 (370)
T ss_pred cCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcE
Confidence 3344456654222 554444333 88999999986 3221 22 23333 9
Q ss_pred EEeecCCCce-eEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCc
Q 001070 189 KIWEDSKVAP-LIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASE 245 (1165)
Q Consensus 189 riWD~~~g~p-l~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~ 245 (1165)
+.||.|+-.. ..+-..| |+-|.++-| .|+. ++.++++.-|.-|||||+-..
T Consensus 196 ~~~D~RT~~~~~sI~dAH-gq~vrdlDf--Npnk---q~~lvt~gDdgyvriWD~R~t 247 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDAH-GQRVRDLDF--NPNK---QHILVTCGDDGYVRIWDTRKT 247 (370)
T ss_pred EEEEccchhhhcchhhhh-cceeeeccC--CCCc---eEEEEEcCCCccEEEEeccCC
Confidence 9999998543 3344445 899999999 5655 445666778999999998544
No 226
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=92.93 E-value=0.93 Score=51.81 Aligned_cols=173 Identities=18% Similarity=0.240 Sum_probs=104.5
Q ss_pred cccccccCCCccc--ccccEeeecCceEEEeecCCcEEEEeCcc-----hhhHhhcCCcc--------------------
Q 001070 135 VNPITKYGSDPEL--LIGRQIAVNKHYVCYGLKGGNVRVLNLNT-----ATRSLLRGHTK-------------------- 187 (1165)
Q Consensus 135 v~pIt~Y~sd~~~--~~GR~IAVn~~yIayG~kdg~IRVwdi~t-----~ir~llrGH~q-------------------- 187 (1165)
.-|.||..|-|.. ..-+++|- .+...|+|-+.. ....+|..|..
T Consensus 96 ~YP~tK~~wiPd~~g~~pdlLAT---------s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~i 166 (364)
T KOG0290|consen 96 PYPVTKLMWIPDSKGVYPDLLAT---------SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLI 166 (364)
T ss_pred CCCccceEecCCccccCcchhhc---------ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCccee
Confidence 3467777776633 12233443 345679998883 45557777776
Q ss_pred --------EEEeecCCCce---eEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCC-C-CC--CC
Q 001070 188 --------IKIWEDSKVAP---LIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEG-W-SL--PT 252 (1165)
Q Consensus 188 --------VriWD~~~g~p---l~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~-~-~~--~~ 252 (1165)
--|||+.+|.. --.|-.|| +.||.|+|+ .+++-+.+|-..|..++|+||-.-+- . .+ |+
T Consensus 167 gtSSiDTTCTiWdie~~~~~~vkTQLIAHD-KEV~DIaf~-----~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~ 240 (364)
T KOG0290|consen 167 GTSSIDTTCTIWDIETGVSGTVKTQLIAHD-KEVYDIAFL-----KGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS 240 (364)
T ss_pred EeecccCeEEEEEEeeccccceeeEEEecC-cceeEEEec-----cCccceEEEecCCCcEEEEEecccccceEEecCCC
Confidence 66999999854 34566786 699999997 34455788888999999999943211 0 00 11
Q ss_pred CC-C----Cc---------------ceEEEEeccCC----CCCccccccEEEEEeecCCcEEEEeccC--CCcEEEEEee
Q 001070 253 HA-E----SW---------------KCTQTLDLKSS----AKPRVEEAFFNQVVVLSQAGLLLFANAK--KNAIYSVHLG 306 (1165)
Q Consensus 253 ~~-~----~w---------------~C~QTLe~~~s----~~~~~~~aff~sV~~~p~a~~ilLan~~--r~aIYalhl~ 306 (1165)
.. . .| .=++-|..... .+.++|++-+|-++-.|..+-.+.+... -..|+-|+--
T Consensus 241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 00 0 01 11222222211 2557899999999999998855554433 3344444444
Q ss_pred cCCCccccccccccccccccceeeeeecc
Q 001070 307 YGNNSAATRIDYIAEFTVTMPVLSFTGTI 335 (1165)
Q Consensus 307 ~g~~~~~~r~dyiaeF~v~~PILSft~~~ 335 (1165)
.. =.+--|||..+...
T Consensus 321 ~~-------------~~~~dPilay~a~~ 336 (364)
T KOG0290|consen 321 PR-------------ENGEDPILAYTAGG 336 (364)
T ss_pred cc-------------cCCCCchhhhhccc
Confidence 32 23456888877654
No 227
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=92.92 E-value=0.23 Score=62.36 Aligned_cols=81 Identities=17% Similarity=0.281 Sum_probs=65.9
Q ss_pred EEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCCCceeEEecCCCCCCcceeEee
Q 001070 160 VCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSKVAPLIILKPHGGQPVNSAQYL 216 (1165)
Q Consensus 160 IayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~g~pl~~lephdG~sV~SVaFl 216 (1165)
|.-|+++|...+||+.| .+-+.|++|.. |-|+.++.+.=+..|+--.| .|.++.|
T Consensus 175 IvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g-~VtslSF- 252 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWG-RVTSLSF- 252 (910)
T ss_pred EEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcccc-ceeEEEe-
Confidence 45699999999999999 88889999976 77788887777888874335 8999999
Q ss_pred cCCCCCCceEEEeecCCCceEEEeEccCcC
Q 001070 217 TAPNQAGHIILVTAGPLNREVKLWASASEE 246 (1165)
Q Consensus 217 ~aP~~~d~~~lvtsGslnrtIKLW~~a~~~ 246 (1165)
+-|| ..++++|.-+..+-+|||+...
T Consensus 253 -rtDG---~p~las~~~~G~m~~wDLe~kk 278 (910)
T KOG1539|consen 253 -RTDG---NPLLASGRSNGDMAFWDLEKKK 278 (910)
T ss_pred -ccCC---CeeEEeccCCceEEEEEcCCCe
Confidence 4444 4488889999999999997653
No 228
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=92.71 E-value=0.64 Score=56.49 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=27.9
Q ss_pred cCceEEEeecCCcEEEEeCcc-hhhH-hhcCCcc
Q 001070 156 NKHYVCYGLKGGNVRVLNLNT-ATRS-LLRGHTK 187 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t-~ir~-llrGH~q 187 (1165)
||.+|++|+.|-+|-|||--. +.++ +-.||++
T Consensus 61 dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHta 94 (758)
T KOG1310|consen 61 DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTA 94 (758)
T ss_pred CCCEEeecCCcceEEeecchhcceeeeeeccccc
Confidence 599999999999999999987 5555 6789999
No 229
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=92.35 E-value=0.45 Score=56.74 Aligned_cols=119 Identities=18% Similarity=0.249 Sum_probs=72.1
Q ss_pred Cceee---cCCceEEecccCCCCCCCCCCcccccccccCCCcccccccEee--ecCceEEEeecCCcEEEEeCcc-----
Q 001070 107 YGKRV---FGDYVAYDVDAVEEGREPTQQLEVNPITKYGSDPELLIGRQIA--VNKHYVCYGLKGGNVRVLNLNT----- 176 (1165)
Q Consensus 107 ~Gr~l---~g~~~~~dVd~~~~ge~~~pqlev~pIt~Y~sd~~~~~GR~IA--Vn~~yIayG~kdg~IRVwdi~t----- 176 (1165)
+|++| .|.-.||--|.+.+ .++ -.+ -|-+.+.|..|+ -||.|+|+|++-|.+-|+|.++
T Consensus 355 dsk~l~~~~~~GeV~v~nl~~~-~~~---------~rf-~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~ 423 (514)
T KOG2055|consen 355 DSKELLASGGTGEVYVWNLRQN-SCL---------HRF-VDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAST 423 (514)
T ss_pred CCcEEEEEcCCceEEEEecCCc-ceE---------EEE-eecCccceeeeeecCCCceEEeccCcceEEEeccchhhccC
Confidence 78888 34455655555555 333 122 233445688766 7999999999999999999664
Q ss_pred -------------hhhHhhcCCcc-------------EEEeecCCCceeEEecCCCCC--CcceeEeecCCCCCCceEEE
Q 001070 177 -------------ATRSLLRGHTK-------------IKIWEDSKVAPLIILKPHGGQ--PVNSAQYLTAPNQAGHIILV 228 (1165)
Q Consensus 177 -------------~ir~llrGH~q-------------VriWD~~~g~pl~~lephdG~--sV~SVaFl~aP~~~d~~~lv 228 (1165)
+|-+|--.|.- +|+--+-+..=..-|-+.++. -|.||+| +|+++. |.
T Consensus 424 ~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aF--SP~sG~---lA 498 (514)
T KOG2055|consen 424 NPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAF--SPNSGY---LA 498 (514)
T ss_pred CCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEe--cCCCce---EE
Confidence 11111112221 343333322223344333332 7999999 687766 55
Q ss_pred eecCCCceEEEeEc
Q 001070 229 TAGPLNREVKLWAS 242 (1165)
Q Consensus 229 tsGslnrtIKLW~~ 242 (1165)
. |--.+.+.||.+
T Consensus 499 v-GNe~grv~l~kL 511 (514)
T KOG2055|consen 499 V-GNEAGRVHLFKL 511 (514)
T ss_pred e-ecCCCceeeEee
Confidence 4 778888999987
No 230
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=92.28 E-value=0.24 Score=59.92 Aligned_cols=51 Identities=22% Similarity=0.433 Sum_probs=40.8
Q ss_pred EEEeecCCCceeEEecCCCCC--CcceeEeecCCCCCCceEEEeecCCCceEEEeEccC
Q 001070 188 IKIWEDSKVAPLIILKPHGGQ--PVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASAS 244 (1165)
Q Consensus 188 VriWD~~~g~pl~~lephdG~--sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~ 244 (1165)
+-|||.-.-.+|+... .|| -|+||-|+ |+..+.+ |.+|..|+.|||+|+..
T Consensus 74 ~ivWd~~~~KllhsI~--TgHtaNIFsvKFv--P~tnnri--v~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 74 LIVWDPFEYKLLHSIS--TGHTANIFSVKFV--PYTNNRI--VLSGAGDKLIKLFDLDS 126 (758)
T ss_pred EEeecchhcceeeeee--cccccceeEEeee--ccCCCeE--EEeccCcceEEEEeccc
Confidence 8899987666777664 355 89999997 8877744 55799999999999975
No 231
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.21 E-value=0.35 Score=62.45 Aligned_cols=80 Identities=18% Similarity=0.345 Sum_probs=54.8
Q ss_pred eEEEeecCCcEEEEeCcc-------hhhHhhcCCcc-----------------------EEEeecCCCceeEEecCCCC-
Q 001070 159 YVCYGLKGGNVRVLNLNT-------ATRSLLRGHTK-----------------------IKIWEDSKVAPLIILKPHGG- 207 (1165)
Q Consensus 159 yIayG~kdg~IRVwdi~t-------~ir~llrGH~q-----------------------VriWD~~~g~pl~~lephdG- 207 (1165)
.||.|++||+|-+||-+. .+-..++.|+. |-|||..+-. .-+.+.+-
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~--tP~~~~~~~ 159 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE--TPFTPGSQA 159 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcC--CCCCCCCCC
Confidence 488999999999999774 44456777887 9999998721 11222111
Q ss_pred --CCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCc
Q 001070 208 --QPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASE 245 (1165)
Q Consensus 208 --~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~ 245 (1165)
+-|.+|+| |+.. .++++||+-+.++.|||+-..
T Consensus 160 ~~~eI~~lsW----Nrkv-qhILAS~s~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 160 PPSEIKCLSW----NRKV-SHILASGSPSGRAVIWDLRKK 194 (1049)
T ss_pred CcccceEecc----chhh-hHHhhccCCCCCceeccccCC
Confidence 24566666 5544 234678989989999999554
No 232
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=92.06 E-value=0.38 Score=59.36 Aligned_cols=115 Identities=17% Similarity=0.333 Sum_probs=80.7
Q ss_pred eEEEeecCCcEEEEeCcc---hhhHhhcCCcc----------------------------EEEeecC-CCceeEEecCCC
Q 001070 159 YVCYGLKGGNVRVLNLNT---ATRSLLRGHTK----------------------------IKIWEDS-KVAPLIILKPHG 206 (1165)
Q Consensus 159 yIayG~kdg~IRVwdi~t---~ir~llrGH~q----------------------------VriWD~~-~g~pl~~lephd 206 (1165)
||+ |.+.|.|-.-+++. ..--+++||.+ ||||... ...|+-.|+-+
T Consensus 363 FiV-GTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~- 440 (555)
T KOG1587|consen 363 FIV-GTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSS- 440 (555)
T ss_pred EEE-EcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhc-
Confidence 443 88899888855553 33356677755 9999887 67888777654
Q ss_pred CCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecC
Q 001070 207 GQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQ 286 (1165)
Q Consensus 207 G~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~ 286 (1165)
-..|++|+| +|-+|. ++..+..|..|-||||.-. .....|.|-+. ..+.+-|...+.
T Consensus 441 ~~~v~~vaW--Sptrpa---vF~~~d~~G~l~iWDLl~~--------~~~Pv~s~~~~----------~~~l~~~~~s~~ 497 (555)
T KOG1587|consen 441 PDYVTDVAW--SPTRPA---VFATVDGDGNLDIWDLLQD--------DEEPVLSQKVC----------SPALTRVRWSPN 497 (555)
T ss_pred cceeeeeEE--cCcCce---EEEEEcCCCceehhhhhcc--------ccCCccccccc----------ccccceeecCCC
Confidence 246999999 688888 6667899999999998432 12234444333 234445566777
Q ss_pred CcEEEEeccCCC
Q 001070 287 AGLLLFANAKKN 298 (1165)
Q Consensus 287 a~~ilLan~~r~ 298 (1165)
+.+|.++|+..+
T Consensus 498 g~~lavGd~~G~ 509 (555)
T KOG1587|consen 498 GKLLAVGDANGT 509 (555)
T ss_pred CcEEEEecCCCc
Confidence 999999998765
No 233
>PRK00178 tolB translocation protein TolB; Provisional
Probab=92.01 E-value=1.7 Score=50.87 Aligned_cols=112 Identities=15% Similarity=0.139 Sum_probs=62.9
Q ss_pred cEEEEeCcc-hhhHhhcCCcc------------------------EEEeecCCCceeEEecCCCCCCcceeEeecCCCCC
Q 001070 168 NVRVLNLNT-ATRSLLRGHTK------------------------IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQA 222 (1165)
Q Consensus 168 ~IRVwdi~t-~ir~llrGH~q------------------------VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~ 222 (1165)
+|.|+|.+. ..+.++.+... |.+||..+|.. ..+....| .+.+.+| +|||.
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-~~l~~~~g-~~~~~~~--SpDG~ 255 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-EQITNFEG-LNGAPAW--SPDGS 255 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-EEccCCCC-CcCCeEE--CCCCC
Confidence 577888876 55555544433 77788877753 33333333 3556888 56653
Q ss_pred CceEEEeec--CCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEe-ccC-CC
Q 001070 223 GHIILVTAG--PLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFA-NAK-KN 298 (1165)
Q Consensus 223 d~~~lvtsG--slnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLa-n~~-r~ 298 (1165)
. |+.+. ..+..|.+||++++ .+.+ |.. +.........+|++++|+.+ +.. ..
T Consensus 256 ~---la~~~~~~g~~~Iy~~d~~~~------------~~~~-lt~--------~~~~~~~~~~spDg~~i~f~s~~~g~~ 311 (430)
T PRK00178 256 K---LAFVLSKDGNPEIYVMDLASR------------QLSR-VTN--------HPAIDTEPFWGKDGRTLYFTSDRGGKP 311 (430)
T ss_pred E---EEEEEccCCCceEEEEECCCC------------CeEE-ccc--------CCCCcCCeEECCCCCEEEEEECCCCCc
Confidence 3 43222 33457888887654 2221 221 11223345678999876554 432 45
Q ss_pred cEEEEEeec
Q 001070 299 AIYSVHLGY 307 (1165)
Q Consensus 299 aIYalhl~~ 307 (1165)
.||.+-+.-
T Consensus 312 ~iy~~d~~~ 320 (430)
T PRK00178 312 QIYKVNVNG 320 (430)
T ss_pred eEEEEECCC
Confidence 789887653
No 234
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=91.97 E-value=0.16 Score=39.34 Aligned_cols=18 Identities=22% Similarity=0.599 Sum_probs=17.0
Q ss_pred cCceEEEeecCCcEEEEe
Q 001070 156 NKHYVCYGLKGGNVRVLN 173 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwd 173 (1165)
++.+|++|..||.|||||
T Consensus 22 ~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 22 DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp TSSEEEEEETTSEEEEEE
T ss_pred ccccceeeCCCCEEEEEC
Confidence 589999999999999998
No 235
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=91.79 E-value=0.34 Score=55.48 Aligned_cols=135 Identities=16% Similarity=0.252 Sum_probs=83.3
Q ss_pred CceEEEeecCCcEEEEeCcc-hhhHh-----hcCCcc----EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceE
Q 001070 157 KHYVCYGLKGGNVRVLNLNT-ATRSL-----LRGHTK----IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHII 226 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~t-~ir~l-----lrGH~q----VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~ 226 (1165)
|-||++|-|.|.+-.+-+.. .-+.- |.||+- .+--|+. +.|+.+-|++ +-+.. .|
T Consensus 38 g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleie-------------EKin~I~w~~-~t~r~-hF 102 (460)
T COG5170 38 GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIE-------------EKINAIEWFD-DTGRN-HF 102 (460)
T ss_pred cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHH-------------HHhhheeeec-CCCcc-eE
Confidence 88999999999999998876 43332 666664 2222221 3455555552 22333 34
Q ss_pred EEeecCCCceEEEeEccC-----------cCCCCCCCCC--------CCcceEEEEeccCCCCC----ccccccEEEEEe
Q 001070 227 LVTAGPLNREVKLWASAS-----------EEGWSLPTHA--------ESWKCTQTLDLKSSAKP----RVEEAFFNQVVV 283 (1165)
Q Consensus 227 lvtsGslnrtIKLW~~a~-----------~~~~~~~~~~--------~~w~C~QTLe~~~s~~~----~~~~aff~sV~~ 283 (1165)
|++ + .|||||||-+-. .+|+..|-++ ..++|-+.-+.-...+. +.|--..|++.+
T Consensus 103 Lls-t-NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~ 180 (460)
T COG5170 103 LLS-T-NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF 180 (460)
T ss_pred EEe-c-CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee
Confidence 663 3 899999999833 2233333221 12455444443222111 356667899999
Q ss_pred ecCCcEEEEeccCCCcEEEEEeecC
Q 001070 284 LSQAGLLLFANAKKNAIYSVHLGYG 308 (1165)
Q Consensus 284 ~p~a~~ilLan~~r~aIYalhl~~g 308 (1165)
..|...+|-||.-|=.++-+.+--+
T Consensus 181 NsD~et~lSaDdLrINLWnl~i~D~ 205 (460)
T COG5170 181 NSDKETLLSADDLRINLWNLEIIDG 205 (460)
T ss_pred cCchheeeeccceeeeeccccccCC
Confidence 9999999999998888887766543
No 236
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=91.78 E-value=0.39 Score=54.12 Aligned_cols=25 Identities=20% Similarity=0.111 Sum_probs=19.5
Q ss_pred CCccccccEEEEEeecCCcEEEEec
Q 001070 270 KPRVEEAFFNQVVVLSQAGLLLFAN 294 (1165)
Q Consensus 270 ~~~~~~aff~sV~~~p~a~~ilLan 294 (1165)
....|++=+|.|+++|+.+++-+|.
T Consensus 288 VLkyHsagvn~vAfspd~~lmAaas 312 (323)
T KOG0322|consen 288 VLKYHSAGVNAVAFSPDCELMAAAS 312 (323)
T ss_pred hhhhhhcceeEEEeCCCCchhhhcc
Confidence 3456889999999999988765543
No 237
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=91.70 E-value=0.27 Score=58.93 Aligned_cols=6 Identities=67% Similarity=1.536 Sum_probs=2.2
Q ss_pred CCCCCC
Q 001070 25 PYPPPS 30 (1165)
Q Consensus 25 ~~~~~~ 30 (1165)
|+|||+
T Consensus 375 ~PPPpp 380 (569)
T KOG3671|consen 375 PPPPPP 380 (569)
T ss_pred CCcCCC
Confidence 333333
No 238
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=91.12 E-value=1.4 Score=53.22 Aligned_cols=77 Identities=21% Similarity=0.325 Sum_probs=57.0
Q ss_pred CceEEEeecCCcEEEEeCcc----hhhHhhcCCcc----------------------EEEeecCCCceeEEecCCCCCCc
Q 001070 157 KHYVCYGLKGGNVRVLNLNT----ATRSLLRGHTK----------------------IKIWEDSKVAPLIILKPHGGQPV 210 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~t----~ir~llrGH~q----------------------VriWD~~~g~pl~~lephdG~sV 210 (1165)
...||+-. -|+|-.|+..+ .-..+|.+|++ |.||+..+..-...-..||| .|
T Consensus 213 ~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~g-gv 290 (626)
T KOG2106|consen 213 PNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDG-GV 290 (626)
T ss_pred CcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCC-ce
Confidence 44555443 38999999997 23349999998 89999865432222228887 89
Q ss_pred ceeEeecCCCCCCceEEEeecCCCceEEEeEc
Q 001070 211 NSAQYLTAPNQAGHIILVTAGPLNREVKLWAS 242 (1165)
Q Consensus 211 ~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~ 242 (1165)
|+++-+ .++. |++ |.-||.|-+||-
T Consensus 291 ~~L~~l-----r~Gt-llS-GgKDRki~~Wd~ 315 (626)
T KOG2106|consen 291 FSLCML-----RDGT-LLS-GGKDRKIILWDD 315 (626)
T ss_pred EEEEEe-----cCcc-Eee-cCccceEEeccc
Confidence 999997 6777 775 889999999994
No 239
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=90.89 E-value=0.14 Score=65.61 Aligned_cols=19 Identities=26% Similarity=0.320 Sum_probs=11.9
Q ss_pred HHHHhhccCcccccccCCC
Q 001070 1057 VSWLCSQVDMHGLLSMVPL 1075 (1165)
Q Consensus 1057 V~~LcsrvDP~~Lfsl~Pl 1075 (1165)
|-.+-++.+|..+|+|...
T Consensus 1204 f~svysk~nPnllFSM~Gf 1222 (2365)
T COG5178 1204 FGSVYSKINPNLLFSMVGF 1222 (2365)
T ss_pred cceeeeccCCceeEEeece
Confidence 3345566777777776643
No 240
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=90.84 E-value=0.35 Score=57.69 Aligned_cols=91 Identities=19% Similarity=0.262 Sum_probs=54.5
Q ss_pred ccEeeec--CceEEEeecCCcEEEEeCcc-hhhH-hhcCCcc------------------EEEeecC-CCceeEEecCC-
Q 001070 150 GRQIAVN--KHYVCYGLKGGNVRVLNLNT-ATRS-LLRGHTK------------------IKIWEDS-KVAPLIILKPH- 205 (1165)
Q Consensus 150 GR~IAVn--~~yIayG~kdg~IRVwdi~t-~ir~-llrGH~q------------------VriWD~~-~g~pl~~leph- 205 (1165)
-+.|||| |.|.+|...|..++|||+.+ ..-+ +..-|-- |.||-+. +|.+ ..-.|+
T Consensus 296 V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~-~~~~pYm 374 (545)
T KOG1272|consen 296 VSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIWKDALKGSG-HGETPYM 374 (545)
T ss_pred cceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCCeeeeehhhhcCCC-CCCcchh
Confidence 3569996 99999999999999999987 3222 2111111 9999664 3221 112222
Q ss_pred ---CCCCcceeEeecC------CCCCCceEEEeecCCCceEEEeE
Q 001070 206 ---GGQPVNSAQYLTA------PNQAGHIILVTAGPLNREVKLWA 241 (1165)
Q Consensus 206 ---dG~sV~SVaFl~a------P~~~d~~~lvtsGslnrtIKLW~ 241 (1165)
-|-+|..|-|+.- -+.+++..+|+=|+.+-...=|+
T Consensus 375 ~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~e 419 (545)
T KOG1272|consen 375 NHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSLE 419 (545)
T ss_pred hhccCcccccceeccHHHeeeccccCCceeEeccCCCCCCcchhc
Confidence 1239999999621 12345555666666554444443
No 241
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.82 E-value=2.6 Score=50.08 Aligned_cols=153 Identities=14% Similarity=0.196 Sum_probs=106.2
Q ss_pred hhcCCccEEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceE
Q 001070 181 LLRGHTKIKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCT 260 (1165)
Q Consensus 181 llrGH~qVriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~ 260 (1165)
+|-|-. |++.|..+-.+.+ +-|-.|.-+.+++| +|+..+ |++.+|++++|||.|+.+. .|+
T Consensus 169 ~lpGvG-v~~l~~~~fkssq-~lp~~g~~Irdlaf--Sp~~~G---Ll~~asl~nkiki~dlet~------------~~v 229 (463)
T KOG1645|consen 169 LLPGVG-VQKLESHDFKSSQ-ILPGEGSFIRDLAF--SPFNEG---LLGLASLGNKIKIMDLETS------------CVV 229 (463)
T ss_pred cCCccc-eEEeccCCcchhh-cccccchhhhhhcc--Cccccc---eeeeeccCceEEEEecccc------------eee
Confidence 888877 9999887766666 44555889999999 576666 8889999999999999554 888
Q ss_pred EEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEeecCCCccccccccccccccccceeeeeeccC-C-C
Q 001070 261 QTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGYGNNSAATRIDYIAEFTVTMPVLSFTGTID-P-P 338 (1165)
Q Consensus 261 QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~g~~~~~~r~dyiaeF~v~~PILSft~~~d-~-~ 338 (1165)
+++.. + +-..+++.+.+..-.+-|--.+-.||+.-+....++- +...++- -..||.++.-... + -
T Consensus 230 ssy~a--------~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~---~e~~a~~-t~~pv~~i~~~~~n~~f 296 (463)
T KOG1645|consen 230 SSYIA--------Y-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPL---MELVANV-TINPVHKIAPVQPNKIF 296 (463)
T ss_pred eheec--------c-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchH---hhhhhhh-ccCcceeecccCccccc
Confidence 88884 3 4455889999988888888889999998888755532 1111211 1356655433221 1 0
Q ss_pred CcceEEEEEeehhhhhhhccccc-cccCCC
Q 001070 339 SEHIIKLYCVQTQAIQQYSLNLF-QCLPPP 367 (1165)
Q Consensus 339 ge~~vq~yCvQtqAIQqy~l~~~-~c~pp~ 367 (1165)
-.+. +-.-+--++|+|-+.++ .|.|+.
T Consensus 297 ~~gg--lLv~~lt~l~f~ei~~s~~~~p~v 324 (463)
T KOG1645|consen 297 TSGG--LLVFALTVLQFYEIVFSAECLPCV 324 (463)
T ss_pred cccc--eEEeeehhhhhhhhhccccCCCcc
Confidence 1111 12336678999999998 666654
No 242
>PRK04792 tolB translocation protein TolB; Provisional
Probab=90.74 E-value=2.7 Score=50.24 Aligned_cols=93 Identities=16% Similarity=0.189 Sum_probs=52.6
Q ss_pred EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCc--eEEEeEccCcCCCCCCCCCCCcceEEEEec
Q 001070 188 IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNR--EVKLWASASEEGWSLPTHAESWKCTQTLDL 265 (1165)
Q Consensus 188 VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnr--tIKLW~~a~~~~~~~~~~~~~w~C~QTLe~ 265 (1165)
|++||..+|.+ ..+....| ...+.+| +|||.. |+.+.+.+. .|.+|+++++ .. ..|..
T Consensus 244 L~~~dl~tg~~-~~lt~~~g-~~~~~~w--SPDG~~---La~~~~~~g~~~Iy~~dl~tg------------~~-~~lt~ 303 (448)
T PRK04792 244 IFVQDIYTQVR-EKVTSFPG-INGAPRF--SPDGKK---LALVLSKDGQPEIYVVDIATK------------AL-TRITR 303 (448)
T ss_pred EEEEECCCCCe-EEecCCCC-CcCCeeE--CCCCCE---EEEEEeCCCCeEEEEEECCCC------------Ce-EECcc
Confidence 88888887764 22322223 3457888 566543 443333333 5666676443 21 22221
Q ss_pred cCCCCCccccccEEEEEeecCCcEEEEeccC--CCcEEEEEeecC
Q 001070 266 KSSAKPRVEEAFFNQVVVLSQAGLLLFANAK--KNAIYSVHLGYG 308 (1165)
Q Consensus 266 ~~s~~~~~~~aff~sV~~~p~a~~ilLan~~--r~aIYalhl~~g 308 (1165)
+.........+|++++|+.+..+ +..||.+.++-+
T Consensus 304 --------~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g 340 (448)
T PRK04792 304 --------HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG 340 (448)
T ss_pred --------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 12233456789999988765433 467998887643
No 243
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=90.59 E-value=1.3 Score=51.47 Aligned_cols=92 Identities=13% Similarity=0.277 Sum_probs=62.7
Q ss_pred EeeecCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCCC-ceeEEecCCCC
Q 001070 152 QIAVNKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSKV-APLIILKPHGG 207 (1165)
Q Consensus 152 ~IAVn~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~g-~pl~~lephdG 207 (1165)
.++.||+|||...+- ++-|=|..| .+.+||.--.+ |.+|+..-- ---.+-|+.+
T Consensus 15 ~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~a- 92 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQA- 92 (447)
T ss_pred eECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCC-
Confidence 367799999976654 666677777 66666644333 778886532 1233444444
Q ss_pred CCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCC
Q 001070 208 QPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLP 251 (1165)
Q Consensus 208 ~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~ 251 (1165)
...+..| +|+| +++++..+.+-.|-+|.+-+..|.++|
T Consensus 93 -gls~~~W--SPdg---rhiL~tseF~lriTVWSL~t~~~~~~~ 130 (447)
T KOG4497|consen 93 -GLSSISW--SPDG---RHILLTSEFDLRITVWSLNTQKGYLLP 130 (447)
T ss_pred -cceeeeE--CCCc---ceEeeeecceeEEEEEEeccceeEEec
Confidence 4788889 4554 557778999999999999888766554
No 244
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.41 E-value=0.58 Score=55.92 Aligned_cols=44 Identities=20% Similarity=0.230 Sum_probs=20.2
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001070 15 KQFDMRNWFPPYPPPSSSAAGDNFFPYPPPPPPPPPEPHANMHPHPY 61 (1165)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ppp~p~p~~~~~~~~~~~ 61 (1165)
+.|-=..|+.|+-+-.++.+ |+|+.- +|+|+++.|+++|.-+..
T Consensus 404 p~~~~~s~p~pq~qNyppp~--p~f~m~-~~hP~~~~p~~~~g~~~P 447 (483)
T KOG2236|consen 404 PSSSDNSGPSPQQQNYPPPS--PSFPMF-QPHPPESNPPANFGQANP 447 (483)
T ss_pred ccccCCCCCCcccCCCCCCC--CCCCcc-CCCCCCCCCcccccccCc
Confidence 34444566666433333333 344443 334444555555555533
No 245
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=90.16 E-value=3.5 Score=54.78 Aligned_cols=137 Identities=9% Similarity=0.074 Sum_probs=80.2
Q ss_pred Eeeec---CceEEEeecCCcEEEEeCcchhhHhhc--CCc------------------------c-----------EEEe
Q 001070 152 QIAVN---KHYVCYGLKGGNVRVLNLNTATRSLLR--GHT------------------------K-----------IKIW 191 (1165)
Q Consensus 152 ~IAVn---~~yIayG~kdg~IRVwdi~t~ir~llr--GH~------------------------q-----------VriW 191 (1165)
.|||| |...+.-..++.|+|||....+-..+- |.. . ||++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i 651 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI 651 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence 47884 556666788999999998873322111 110 0 6666
Q ss_pred ecCCCceeEEecCC-------C-C--------CCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCC
Q 001070 192 EDSKVAPLIILKPH-------G-G--------QPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAE 255 (1165)
Q Consensus 192 D~~~g~pl~~leph-------d-G--------~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~ 255 (1165)
|..++. +.++.+- + | ...+.|+| .|++. . +.++...|+.|++|+...+.
T Consensus 652 d~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~--dp~~g--~-LyVad~~~~~I~v~d~~~g~--------- 716 (1057)
T PLN02919 652 DFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCF--EPVNE--K-VYIAMAGQHQIWEYNISDGV--------- 716 (1057)
T ss_pred ecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEE--ecCCC--e-EEEEECCCCeEEEEECCCCe---------
Confidence 665554 4444321 0 1 13456777 34332 3 55568889999999975431
Q ss_pred CcceEEEEeccCCC---CC-cc---ccccEEEEEeecCCcEEEEeccCCCcEEEEEeec
Q 001070 256 SWKCTQTLDLKSSA---KP-RV---EEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGY 307 (1165)
Q Consensus 256 ~w~C~QTLe~~~s~---~~-~~---~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~ 307 (1165)
+ .++-+.... .. .+ .-..-+.++++|++++|++||...+.|+++-+.-
T Consensus 717 ---v-~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t 771 (1057)
T PLN02919 717 ---T-RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT 771 (1057)
T ss_pred ---E-EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence 1 112111000 00 00 0112346889999999999999999999987653
No 246
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.93 E-value=0.58 Score=54.90 Aligned_cols=95 Identities=17% Similarity=0.164 Sum_probs=63.7
Q ss_pred cccCCCcccccccEeeecCceEEEeecCCcEEEEeCcchhhHhh----c------------CCc--------cEEEeecC
Q 001070 139 TKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNTATRSLL----R------------GHT--------KIKIWEDS 194 (1165)
Q Consensus 139 t~Y~sd~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t~ir~ll----r------------GH~--------qVriWD~~ 194 (1165)
.++-++..|..|-- -.-+|++.+-+++|+||+...-|=.+ . ||. ++..+|.+
T Consensus 202 PvW~tdi~Fl~g~~----~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r 277 (412)
T KOG3881|consen 202 PVWITDIRFLEGSP----NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLR 277 (412)
T ss_pred eeeeccceecCCCC----CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheeccc
Confidence 44555666665510 13345899999999999986333211 1 111 17788998
Q ss_pred CCceeEE-ecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccC
Q 001070 195 KVAPLII-LKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASAS 244 (1165)
Q Consensus 195 ~g~pl~~-lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~ 244 (1165)
++..+.. |.+-.| ++.|+.-. +.|+ +++++.+||-|+|+|+.+
T Consensus 278 ~~kl~g~~~kg~tG-sirsih~h-----p~~~-~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 278 GGKLLGCGLKGITG-SIRSIHCH-----PTHP-VLASCGLDRYVRIHDIKT 321 (412)
T ss_pred CceeeccccCCccC-CcceEEEc-----CCCc-eEEeeccceeEEEeeccc
Confidence 8876555 776666 88888873 5556 456888999999999866
No 247
>PRK01029 tolB translocation protein TolB; Provisional
Probab=89.63 E-value=3.7 Score=48.99 Aligned_cols=78 Identities=12% Similarity=0.124 Sum_probs=42.3
Q ss_pred CcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCc
Q 001070 209 PVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAG 288 (1165)
Q Consensus 209 sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~ 288 (1165)
.+.+.+| +|||.. |+.....+...+||...... . ......|.+ +...+.....+||++
T Consensus 282 ~~~~p~w--SPDG~~---Laf~s~~~g~~~ly~~~~~~--------~-g~~~~~lt~--------~~~~~~~p~wSPDG~ 339 (428)
T PRK01029 282 TQGNPSF--SPDGTR---LVFVSNKDGRPRIYIMQIDP--------E-GQSPRLLTK--------KYRNSSCPAWSPDGK 339 (428)
T ss_pred CcCCeEE--CCCCCE---EEEEECCCCCceEEEEECcc--------c-ccceEEecc--------CCCCccceeECCCCC
Confidence 4567888 566543 55434445556677653321 0 012333432 112233567899999
Q ss_pred EEEEeccC--CCcEEEEEeecC
Q 001070 289 LLLFANAK--KNAIYSVHLGYG 308 (1165)
Q Consensus 289 ~ilLan~~--r~aIYalhl~~g 308 (1165)
+|+..... ...||.+.++-|
T Consensus 340 ~Laf~~~~~g~~~I~v~dl~~g 361 (428)
T PRK01029 340 KIAFCSVIKGVRQICVYDLATG 361 (428)
T ss_pred EEEEEEcCCCCcEEEEEECCCC
Confidence 88876543 346888776543
No 248
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=89.51 E-value=2.6 Score=53.61 Aligned_cols=164 Identities=21% Similarity=0.259 Sum_probs=92.5
Q ss_pred eeecCceEEEeecCCcEEEEeCcchhhHhhcCCccEEEeecCC-CceeEEecCCCCCCcceeEeecCCCCCCceEEEeec
Q 001070 153 IAVNKHYVCYGLKGGNVRVLNLNTATRSLLRGHTKIKIWEDSK-VAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAG 231 (1165)
Q Consensus 153 IAVn~~yIayG~kdg~IRVwdi~t~ir~llrGH~qVriWD~~~-g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsG 231 (1165)
+..|++|||.|.-||+|+||.=-.. ++.+ .+-+--| | -..|.+++| +++|.. |++ |
T Consensus 213 ~spn~~~~Aa~d~dGrI~vw~d~~~--------------~~~~~t~t~lHW--H-~~~V~~L~f--S~~G~~---LlS-G 269 (792)
T KOG1963|consen 213 LSPNERYLAAGDSDGRILVWRDFGS--------------SDDSETCTLLHW--H-HDEVNSLSF--SSDGAY---LLS-G 269 (792)
T ss_pred eccccceEEEeccCCcEEEEecccc--------------ccccccceEEEe--c-ccccceeEE--ecCCce---Eee-c
Confidence 4457999999999999999953221 1221 1223334 3 249999999 466654 885 6
Q ss_pred CCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEeecCCCc
Q 001070 232 PLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGYGNNS 311 (1165)
Q Consensus 232 slnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~g~~~ 311 (1165)
..-.-+.+|.+++++.-+||-- .+-++.++++||+.+..|.... |.|..||. ++-
T Consensus 270 G~E~VLv~Wq~~T~~kqfLPRL---------------------gs~I~~i~vS~ds~~~sl~~~D-NqI~li~~---~dl 324 (792)
T KOG1963|consen 270 GREGVLVLWQLETGKKQFLPRL---------------------GSPILHIVVSPDSDLYSLVLED-NQIHLIKA---SDL 324 (792)
T ss_pred ccceEEEEEeecCCCccccccc---------------------CCeeEEEEEcCCCCeEEEEecC-ceEEEEec---cch
Confidence 6888999999988855444411 2456677788888876665553 44444443 332
Q ss_pred c----ccccccccccccccceeeeeecc-CC-------CCc-ceEEEEEeehhhhhhhccccccccC
Q 001070 312 A----ATRIDYIAEFTVTMPVLSFTGTI-DP-------PSE-HIIKLYCVQTQAIQQYSLNLFQCLP 365 (1165)
Q Consensus 312 ~----~~r~dyiaeF~v~~PILSft~~~-d~-------~ge-~~vq~yCvQtqAIQqy~l~~~~c~p 365 (1165)
+ ...+.|.+.=+=++|.=-+++.. |+ .|. +-||.|-.+|..- -|.++.++=-.
T Consensus 325 ~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~-i~~~~v~~~n~ 390 (792)
T KOG1963|consen 325 EIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDST-IYKLQVCDENY 390 (792)
T ss_pred hhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccce-eeeEEEEeecc
Confidence 1 12222221111112221112211 22 233 5688888888753 36666554433
No 249
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=89.39 E-value=1.3 Score=55.89 Aligned_cols=8 Identities=13% Similarity=0.015 Sum_probs=3.0
Q ss_pred CCCCCCCC
Q 001070 56 MHPHPYPH 63 (1165)
Q Consensus 56 ~~~~~~~~ 63 (1165)
+++-|.++
T Consensus 313 ~ppv~~ln 320 (830)
T KOG1923|consen 313 FPPVGPLN 320 (830)
T ss_pred CCCCCCCC
Confidence 33333333
No 250
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.19 E-value=0.84 Score=55.32 Aligned_cols=117 Identities=23% Similarity=0.360 Sum_probs=66.8
Q ss_pred cCceEEEeecCCcEEEEeCcc--------hhhHhhcCCcc--------------------EEEeecCCCceeE--EecCC
Q 001070 156 NKHYVCYGLKGGNVRVLNLNT--------ATRSLLRGHTK--------------------IKIWEDSKVAPLI--ILKPH 205 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t--------~ir~llrGH~q--------------------VriWD~~~g~pl~--~leph 205 (1165)
|.+-..+.++|+++++|.|.. +...+...|+. |.+||---|.||. .|.|.
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWDPFigr~Laq~~dapk 825 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWDPFIGRLLAQMEDAPK 825 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceeecccccchhHhhhcCcc
Confidence 455566799999999999984 23346777877 4455544444433 22232
Q ss_pred CCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeec
Q 001070 206 GGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLS 285 (1165)
Q Consensus 206 dG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p 285 (1165)
.| ++.-|--+ |+ -+..+++++.+...|+||+|.-.. .|.| ||+....+ +-.+..--+++.+
T Consensus 826 ~~-a~~~ikcl--~n-v~~~iliAgcsaeSTVKl~DaRsc----------e~~~----E~kVcna~-~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 826 EG-AGGNIKCL--EN-VDRHILIAGCSAESTVKLFDARSC----------EWTC----ELKVCNAP-GPNALTRAIAVAD 886 (1034)
T ss_pred cC-CCceeEec--cc-Ccchheeeeccchhhheeeecccc----------ccee----eEEeccCC-CCchheeEEEecc
Confidence 22 22223222 11 122225665599999999996333 4566 34333111 2345666667778
Q ss_pred CCcEEE
Q 001070 286 QAGLLL 291 (1165)
Q Consensus 286 ~a~~il 291 (1165)
.|+|+-
T Consensus 887 ~GN~lA 892 (1034)
T KOG4190|consen 887 KGNKLA 892 (1034)
T ss_pred Ccchhh
Confidence 777753
No 251
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=89.10 E-value=99 Score=41.70 Aligned_cols=33 Identities=9% Similarity=0.218 Sum_probs=26.2
Q ss_pred EEEEeecCCcEEEEecc---CCCcEEEEEeecCCCc
Q 001070 279 NQVVVLSQAGLLLFANA---KKNAIYSVHLGYGNNS 311 (1165)
Q Consensus 279 ~sV~~~p~a~~ilLan~---~r~aIYalhl~~g~~~ 311 (1165)
..+.+.|.++||++-|+ ..-..|-|||.+..++
T Consensus 656 ~~~sl~p~sRyvv~~~~vClE~G~~Yklri~~~~~~ 691 (1758)
T KOG0994|consen 656 IPFSLPPGSRYVVAPNPVCLEAGKVYKLRIYFERKS 691 (1758)
T ss_pred cccccCCCceeeecCCchhhccCcceEEEEEecccc
Confidence 36778899999999875 5677899999986653
No 252
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=88.92 E-value=0.39 Score=56.94 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=14.3
Q ss_pred CceEEEeecCCCceEEEeEccCcCCCCCCC
Q 001070 223 GHIILVTAGPLNREVKLWASASEEGWSLPT 252 (1165)
Q Consensus 223 d~~~lvtsGslnrtIKLW~~a~~~~~~~~~ 252 (1165)
.|+ .+.=-+||.+|.= ...++-+.++|.
T Consensus 421 c~i-YLSk~sL~~eIvt-sKSsemNi~vp~ 448 (480)
T KOG2675|consen 421 CHI-YLSKDSLDCEIVT-SKSSEMNINVPT 448 (480)
T ss_pred eeE-EeccccccceEEe-ecccceeEeccc
Confidence 344 3445677777762 223333555553
No 253
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=88.72 E-value=7.1 Score=42.21 Aligned_cols=97 Identities=16% Similarity=0.108 Sum_probs=59.6
Q ss_pred EEEeecCCCc--eeEEec-C-CCCCCcceeEeecCCCCCCceEEEeecCCC--ce---EEEeEccCcCCCCCCCCCCCcc
Q 001070 188 IKIWEDSKVA--PLIILK-P-HGGQPVNSAQYLTAPNQAGHIILVTAGPLN--RE---VKLWASASEEGWSLPTHAESWK 258 (1165)
Q Consensus 188 VriWD~~~g~--pl~~le-p-hdG~sV~SVaFl~aP~~~d~~~lvtsGsln--rt---IKLW~~a~~~~~~~~~~~~~w~ 258 (1165)
++++|..+|. .+.... . +.....+.++| .|+| .+.+|..... .. =+||.++.. ++
T Consensus 62 ~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~v--d~~G---~ly~t~~~~~~~~~~~~g~v~~~~~~-----------~~ 125 (246)
T PF08450_consen 62 IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAV--DPDG---NLYVTDSGGGGASGIDPGSVYRIDPD-----------GK 125 (246)
T ss_dssp EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE---TTS----EEEEEECCBCTTCGGSEEEEEEETT-----------SE
T ss_pred eEEEecCCCcEEEEeeccCCCcccCCCceEEE--cCCC---CEEEEecCCCccccccccceEEECCC-----------Ce
Confidence 7777877774 233331 1 12247888888 4444 4455422111 11 245555433 24
Q ss_pred eEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEeecCC
Q 001070 259 CTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGYGN 309 (1165)
Q Consensus 259 C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~g~ 309 (1165)
+...++ .-.+-|-++++|++++|+++|..++.||.+.+....
T Consensus 126 ~~~~~~---------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~ 167 (246)
T PF08450_consen 126 VTVVAD---------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADG 167 (246)
T ss_dssp EEEEEE---------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTT
T ss_pred EEEEec---------CcccccceEECCcchheeecccccceeEEEeccccc
Confidence 544444 235678999999999999999999999999998543
No 254
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=88.25 E-value=1 Score=31.30 Aligned_cols=39 Identities=28% Similarity=0.491 Sum_probs=28.1
Q ss_pred CceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeE
Q 001070 196 VAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWA 241 (1165)
Q Consensus 196 g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~ 241 (1165)
+.++..+..|. ..|+++.| .+++ . ++.+|+.|++|++|+
T Consensus 2 ~~~~~~~~~~~-~~i~~~~~--~~~~---~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHT-GPVTSVAF--SPDG---K-YLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecC-CceeEEEE--CCCC---C-EEEEecCCCeEEEcC
Confidence 34577787775 48999999 3443 3 344678899999996
No 255
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=87.88 E-value=4.5 Score=46.20 Aligned_cols=41 Identities=17% Similarity=0.150 Sum_probs=32.6
Q ss_pred cccccEeee--cCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc
Q 001070 147 LLIGRQIAV--NKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK 187 (1165)
Q Consensus 147 ~~~GR~IAV--n~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q 187 (1165)
++..|+++= |+..|||.-..|+|||+|+.. .+..+-.+|+.
T Consensus 43 ~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~ 86 (282)
T PF15492_consen 43 NPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSF 86 (282)
T ss_pred CchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCccccc
Confidence 677888765 899999999999999999996 55555555544
No 256
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=87.77 E-value=2 Score=50.23 Aligned_cols=140 Identities=19% Similarity=0.272 Sum_probs=85.7
Q ss_pred cCceEEEeecCCcEEEEeCcchhhHhhcCCccEEEeec-CCCce----eEEecCCCCCCcceeEeecCCCCCCceEEEee
Q 001070 156 NKHYVCYGLKGGNVRVLNLNTATRSLLRGHTKIKIWED-SKVAP----LIILKPHGGQPVNSAQYLTAPNQAGHIILVTA 230 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t~ir~llrGH~qVriWD~-~~g~p----l~~lephdG~sV~SVaFl~aP~~~d~~~lvts 230 (1165)
.|.|||||-++|.+-++-...... |+ -++.-. ++..| |..++-. +.|+-+.|+ +++..-.||++
T Consensus 36 ~Ge~LatGdkgGRVv~f~r~~~~~-----~e-y~~~t~fqshepEFDYLkSleie--EKinkIrw~--~~~n~a~FLls- 104 (433)
T KOG1354|consen 36 YGERLATGDKGGRVVLFEREKLYK-----GE-YNFQTEFQSHEPEFDYLKSLEIE--EKINKIRWL--DDGNLAEFLLS- 104 (433)
T ss_pred ccceEeecCCCCeEEEeecccccc-----cc-eeeeeeeeccCcccchhhhhhhh--hhhhhceec--CCCCccEEEEe-
Confidence 499999999999999987765332 21 222210 01111 2223221 477888886 33333456763
Q ss_pred cCCCceEEEeEccCc----CCCCCCCCCCCcceEEEEeccCC--------C-----CCccccccEEEEEeecCCcEEEEe
Q 001070 231 GPLNREVKLWASASE----EGWSLPTHAESWKCTQTLDLKSS--------A-----KPRVEEAFFNQVVVLSQAGLLLFA 293 (1165)
Q Consensus 231 GslnrtIKLW~~a~~----~~~~~~~~~~~w~C~QTLe~~~s--------~-----~~~~~~aff~sV~~~p~a~~ilLa 293 (1165)
+ +|||||||-.... +||.+|.... ..-+.+|..+.. + -.++|.=.+|++.+..|...+|=|
T Consensus 105 t-NdktiKlWKi~er~~k~~~~~~~~~~~-~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 105 T-NDKTIKLWKIRERGSKKEGYNLPEEGP-PGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred c-CCcceeeeeeeccccccccccccccCC-CCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 3 8999999998543 3444442221 112233333221 0 124788889999999999999999
Q ss_pred ccCCCcEEEEEeecC
Q 001070 294 NAKKNAIYSVHLGYG 308 (1165)
Q Consensus 294 n~~r~aIYalhl~~g 308 (1165)
|.-|=.++-+.+.-+
T Consensus 183 DdLRINLWnlei~d~ 197 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQ 197 (433)
T ss_pred cceeeeeccccccCC
Confidence 999988887777653
No 257
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=87.64 E-value=1.2 Score=50.96 Aligned_cols=81 Identities=21% Similarity=0.352 Sum_probs=52.7
Q ss_pred CceEEEeecCCcEEEEeCcchhhHhhcCCcc------------------------EEEeecCCCceeE---EecCCCCCC
Q 001070 157 KHYVCYGLKGGNVRVLNLNTATRSLLRGHTK------------------------IKIWEDSKVAPLI---ILKPHGGQP 209 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~t~ir~llrGH~q------------------------VriWD~~~g~pl~---~lephdG~s 209 (1165)
+.||+||+-|-.||+||..+--+-|+.+--+ ++|-+..++. .+ +++-|.+
T Consensus 223 ~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~-~e~~~~~~s~~~-- 299 (339)
T KOG0280|consen 223 PTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKV-LEFQIVLPSDKI-- 299 (339)
T ss_pred CceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccc-cchheeeecccc--
Confidence 6799999999999999998766667766554 5555555443 22 3333322
Q ss_pred cceeEeecCCCCCCc----eEEEeecCCCceEE-EeEccCc
Q 001070 210 VNSAQYLTAPNQAGH----IILVTAGPLNREVK-LWASASE 245 (1165)
Q Consensus 210 V~SVaFl~aP~~~d~----~~lvtsGslnrtIK-LW~~a~~ 245 (1165)
-+|++| |.|| -++.|.---||.|+ +|--.++
T Consensus 300 hdSl~Y-----G~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 300 HDSLCY-----GGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ccceee-----ccccccccceeeeeeccccceeeeeeeccC
Confidence 356666 6777 44555455777765 8876554
No 258
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=87.49 E-value=1.6 Score=57.39 Aligned_cols=128 Identities=18% Similarity=0.297 Sum_probs=73.0
Q ss_pred ccccEeeec---CceEEEeecCCcEEEEeCcchh------hHhhcCC-cc-----------------------EEEeecC
Q 001070 148 LIGRQIAVN---KHYVCYGLKGGNVRVLNLNTAT------RSLLRGH-TK-----------------------IKIWEDS 194 (1165)
Q Consensus 148 ~~GR~IAVn---~~yIayG~kdg~IRVwdi~t~i------r~llrGH-~q-----------------------VriWD~~ 194 (1165)
.+++ ||++ +.|.++|+.||+|||||...-+ |+-++=| +. |++.++.
T Consensus 1050 ~v~k-~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id 1128 (1431)
T KOG1240|consen 1050 AVIK-LAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRID 1128 (1431)
T ss_pred cccc-eeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcc
Confidence 3453 5553 5899999999999999987522 2222222 11 4444332
Q ss_pred C-----CceeEEecCC---CCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEecc
Q 001070 195 K-----VAPLIILKPH---GGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLK 266 (1165)
Q Consensus 195 ~-----g~pl~~leph---dG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~ 266 (1165)
- -.+.+...|- +|--|.--+| ++-.+. | +|.-+-.++.|.+||.-..+ ..| ++.+.
T Consensus 1129 ~~~~~~~~~~~~ri~n~~~~g~vv~m~a~-~~~~~S-~--~lvy~T~~~~iv~~D~r~~~--------~~w----~lk~~ 1192 (1431)
T KOG1240|consen 1129 HYNVSKRVATQVRIPNLKKDGVVVSMHAF-TAIVQS-H--VLVYATDLSRIVSWDTRMRH--------DAW----RLKNQ 1192 (1431)
T ss_pred ccccccceeeeeecccccCCCceEEeecc-cccccc-e--eEEEEEeccceEEecchhhh--------hHH----hhhcC
Confidence 1 1122222222 2333333344 233333 2 34457799999999974442 123 33331
Q ss_pred CCCCCccccccEEEEEeecCCcEEEEeccCCC
Q 001070 267 SSAKPRVEEAFFNQVVVLSQAGLLLFANAKKN 298 (1165)
Q Consensus 267 ~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~ 298 (1165)
. ....+-+++++|.+.|+++...+.-
T Consensus 1193 ~------~hG~vTSi~idp~~~WlviGts~G~ 1218 (1431)
T KOG1240|consen 1193 L------RHGLVTSIVIDPWCNWLVIGTSRGQ 1218 (1431)
T ss_pred c------cccceeEEEecCCceEEEEecCCce
Confidence 1 2357789999999999999988754
No 259
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=87.46 E-value=0.76 Score=53.41 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=24.8
Q ss_pred ceEEEeecCCcEEEEeCcc--hhhHhhcCCcc
Q 001070 158 HYVCYGLKGGNVRVLNLNT--ATRSLLRGHTK 187 (1165)
Q Consensus 158 ~yIayG~kdg~IRVwdi~t--~ir~llrGH~q 187 (1165)
..|.+|++|..|-+|||-- -+-..+.||.+
T Consensus 210 ~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~ 241 (404)
T KOG1409|consen 210 RLLFSGASDHSVIMWDIGGRKGTAYELQGHND 241 (404)
T ss_pred cEEEeccccCceEEEeccCCcceeeeeccchh
Confidence 4567899999999999985 56668888887
No 260
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=86.51 E-value=3.2 Score=49.44 Aligned_cols=6 Identities=67% Similarity=0.911 Sum_probs=2.4
Q ss_pred ccEeee
Q 001070 150 GRQIAV 155 (1165)
Q Consensus 150 GR~IAV 155 (1165)
-|.|||
T Consensus 494 sRRiav 499 (518)
T KOG1830|consen 494 SRRIAV 499 (518)
T ss_pred HHHHHH
Confidence 344443
No 261
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=86.26 E-value=6.1 Score=50.22 Aligned_cols=209 Identities=13% Similarity=0.181 Sum_probs=121.1
Q ss_pred ceEEecccCCCCCCCCCCcccccccccCCCcccccccEeeec--CceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----
Q 001070 115 YVAYDVDAVEEGREPTQQLEVNPITKYGSDPELLIGRQIAVN--KHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK---- 187 (1165)
Q Consensus 115 ~~~~dVd~~~~ge~~~pqlev~pIt~Y~sd~~~~~GR~IAVn--~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q---- 187 (1165)
..|+=||+|.---.|+=.+.=.-||+--|-|.-+.-...+.- -=.||.+-..|+|-|||... .++.-|.-|..
T Consensus 35 slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qd 114 (1062)
T KOG1912|consen 35 SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQD 114 (1062)
T ss_pred ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhh
Confidence 567788887764443112222456666676655444443321 23467788899999999998 66666666655
Q ss_pred ----------------------EEEeecCCCc----------eeE--EecCCCC---------CCcceeEeec--CCCCC
Q 001070 188 ----------------------IKIWEDSKVA----------PLI--ILKPHGG---------QPVNSAQYLT--APNQA 222 (1165)
Q Consensus 188 ----------------------VriWD~~~g~----------pl~--~lephdG---------~sV~SVaFl~--aP~~~ 222 (1165)
|-+|...+|. +|. ++.|+|- .-|.++-|+. -|+++
T Consensus 115 l~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~p 194 (1062)
T KOG1912|consen 115 LCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVP 194 (1062)
T ss_pred eeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCC
Confidence 7788877774 233 5566652 2566666654 37788
Q ss_pred CceEEEeecCCC-ceEEEeEccCcC-------CCCCC------CCCCCcceEEEEeccCCCC-CccccccEEEEEeecCC
Q 001070 223 GHIILVTAGPLN-REVKLWASASEE-------GWSLP------THAESWKCTQTLDLKSSAK-PRVEEAFFNQVVVLSQA 287 (1165)
Q Consensus 223 d~~~lvtsGsln-rtIKLW~~a~~~-------~~~~~------~~~~~w~C~QTLe~~~s~~-~~~~~aff~sV~~~p~a 287 (1165)
++.|-|++--.| ..++.-. +++. ....+ +-...|+-+--+.|+..-- -+-+-.-.+.|+..+++
T Consensus 195 gk~~qI~sd~Sdl~~lere~-at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~ 273 (1062)
T KOG1912|consen 195 GKEFQITSDHSDLAHLERET-ATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERG 273 (1062)
T ss_pred ceeEEEecCccchhhhhhhh-hccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccC
Confidence 888888765222 1111100 1110 00000 0024577776666654320 00111234466677777
Q ss_pred c---EEEEeccCCCcEEEEEeecCCCccccccccccccccc
Q 001070 288 G---LLLFANAKKNAIYSVHLGYGNNSAATRIDYIAEFTVT 325 (1165)
Q Consensus 288 ~---~ilLan~~r~aIYalhl~~g~~~~~~r~dyiaeF~v~ 325 (1165)
+ +=++-+.+|-++||+|.. |.-.-..|-.|-.+|+..
T Consensus 274 ~akfv~vlP~~~rd~LfclH~n-G~ltirvrk~~~~~f~~~ 313 (1062)
T KOG1912|consen 274 GAKFVDVLPDPRRDALFCLHSN-GRLTIRVRKEEPTEFKKP 313 (1062)
T ss_pred CcceeEeccCCCcceEEEEecC-CeEEEEEeeccCcccccc
Confidence 4 446788999999999987 555445667788888765
No 262
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=86.12 E-value=1.3 Score=60.25 Aligned_cols=7 Identities=29% Similarity=0.325 Sum_probs=3.1
Q ss_pred eecCCcE
Q 001070 283 VLSQAGL 289 (1165)
Q Consensus 283 ~~p~a~~ 289 (1165)
+-|++++
T Consensus 1912 LEPQAQL 1918 (2039)
T PRK15319 1912 LTPQAQV 1918 (2039)
T ss_pred EEEEEEE
Confidence 3444443
No 263
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=85.58 E-value=7.9 Score=45.74 Aligned_cols=150 Identities=24% Similarity=0.398 Sum_probs=88.2
Q ss_pred EEEeecCCCc--eeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccC---cCCCCCCCCCCC---c-c
Q 001070 188 IKIWEDSKVA--PLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASAS---EEGWSLPTHAES---W-K 258 (1165)
Q Consensus 188 VriWD~~~g~--pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~---~~~~~~~~~~~~---w-~ 258 (1165)
|+|||+.+|. ||..+ +. -.+.=+-| +||+ .+|. ++.-|+.-++|.... .|.|.+.++... | .
T Consensus 220 i~iWdpdtg~~~pL~~~-gl--gg~slLkw--SPdg---d~lf-aAt~davfrlw~e~q~wt~erw~lgsgrvqtacWsp 290 (445)
T KOG2139|consen 220 IMIWDPDTGQKIPLIPK-GL--GGFSLLKW--SPDG---DVLF-AATCDAVFRLWQENQSWTKERWILGSGRVQTACWSP 290 (445)
T ss_pred EEEEcCCCCCccccccc-CC--CceeeEEE--cCCC---CEEE-EecccceeeeehhcccceecceeccCCceeeeeecC
Confidence 9999998874 55533 22 24666777 4665 3355 477999999996543 456655544321 2 2
Q ss_pred eEEEEeccCCCCCc----------------------------------------cccccEEEEEeecCCcEEEEeccCCC
Q 001070 259 CTQTLDLKSSAKPR----------------------------------------VEEAFFNQVVVLSQAGLLLFANAKKN 298 (1165)
Q Consensus 259 C~QTLe~~~s~~~~----------------------------------------~~~aff~sV~~~p~a~~ilLan~~r~ 298 (1165)
|-.+|-|..+.+++ ++++- +++-||.|.++.+.=-..+
T Consensus 291 cGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq--~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 291 CGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQ--CLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred CCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccc--eeeECCCCCEEEEEEcCCc
Confidence 43444443322110 11121 4567788887777766666
Q ss_pred --cEEEEEeecCCCccccccccccccccccceeeee--ecc--C-C--------CCcceEEEEEeehhhhhhhccccc
Q 001070 299 --AIYSVHLGYGNNSAATRIDYIAEFTVTMPVLSFT--GTI--D-P--------PSEHIIKLYCVQTQAIQQYSLNLF 361 (1165)
Q Consensus 299 --aIYalhl~~g~~~~~~r~dyiaeF~v~~PILSft--~~~--d-~--------~ge~~vq~yCvQtqAIQqy~l~~~ 361 (1165)
.+|-.|+.. || +...|+.+|. +.. + | +-++-+-.-|-=|==||.|-|.+.
T Consensus 369 ~v~~~k~~i~~--------fd-----tr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f~ 433 (445)
T KOG2139|consen 369 FVLLCKLHISR--------FD-----TRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTFQ 433 (445)
T ss_pred hhhhhhhhhhh--------hc-----ccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeEEE
Confidence 667666653 22 2345555554 211 1 1 356667777888888999988875
No 264
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=85.48 E-value=5 Score=46.74 Aligned_cols=59 Identities=19% Similarity=0.283 Sum_probs=37.4
Q ss_pred CCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCcccccc-EEEEEeecCCcEEEEeccCCC---cEEEEEeecC
Q 001070 233 LNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAF-FNQVVVLSQAGLLLFANAKKN---AIYSVHLGYG 308 (1165)
Q Consensus 233 lnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~af-f~sV~~~p~a~~ilLan~~r~---aIYalhl~~g 308 (1165)
..+.|++|.+.+.. -... +-|... ...| +..+..+.+++||++.-.... -||.+.+..+
T Consensus 200 ~~~~v~~~~~gt~~----------~~d~--lvfe~~-----~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQ----------SEDE--LVFEEP-----DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp CCEEEEEEETTS-G----------GG-E--EEEC-T-----TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred CCcEEEEEECCCCh----------HhCe--eEEeec-----CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 46778888884431 1222 333221 2356 889999999999998655554 5899988875
No 265
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=85.30 E-value=1.1 Score=55.38 Aligned_cols=101 Identities=19% Similarity=0.238 Sum_probs=68.5
Q ss_pred EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEE------
Q 001070 188 IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQ------ 261 (1165)
Q Consensus 188 VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~Q------ 261 (1165)
+.|+|+..|..++.+++|. +-||+|||. .|++ +.+||+.|+-+-||....+ |.|-=+.+..-.|.-
T Consensus 35 lliyD~ndG~llqtLKgHK-DtVycVAys-----~dGk-rFASG~aDK~VI~W~~klE-G~LkYSH~D~IQCMsFNP~~h 106 (1081)
T KOG1538|consen 35 LLVYDTSDGTLLQPLKGHK-DTVYCVAYA-----KDGK-RFASGSADKSVIIWTSKLE-GILKYSHNDAIQCMSFNPITH 106 (1081)
T ss_pred EEEEeCCCccccccccccc-ceEEEEEEc-----cCCc-eeccCCCceeEEEeccccc-ceeeeccCCeeeEeecCchHH
Confidence 7899999999999999984 699999994 5556 6889999999999997554 554445554444432
Q ss_pred EEeccC-------CCCC-----ccccccEEEEEeecCCcEEEEeccC
Q 001070 262 TLDLKS-------SAKP-----RVEEAFFNQVVVLSQAGLLLFANAK 296 (1165)
Q Consensus 262 TLe~~~-------s~~~-----~~~~aff~sV~~~p~a~~ilLan~~ 296 (1165)
.|--.+ |++- ....+=++.++-+-||+++.|....
T Consensus 107 ~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~n 153 (1081)
T KOG1538|consen 107 QLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFN 153 (1081)
T ss_pred HhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccC
Confidence 111000 0000 0122346677888999998887653
No 266
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=85.18 E-value=7.1 Score=49.91 Aligned_cols=88 Identities=15% Similarity=0.315 Sum_probs=50.9
Q ss_pred eEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccE
Q 001070 199 LIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFF 278 (1165)
Q Consensus 199 l~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff 278 (1165)
-.+-.|| |+.+-..+|+..+. .+ + +| +++.|..+|||.+...+.- +| .+..|.|.--=-| |+.-.
T Consensus 448 T~I~~PH-~~~~vat~~~~~~r-s~-~-~v-ta~~dg~~KiW~~~~~~n~-~k-~~s~W~c~~i~sy--------~k~~i 512 (792)
T KOG1963|consen 448 TKINNPH-GNAFVATIFLNPTR-SV-R-CV-TASVDGDFKIWVFTDDSNI-YK-KSSNWTCKAIGSY--------HKTPI 512 (792)
T ss_pred EEEecCC-CceeEEEEEecCcc-cc-e-eE-EeccCCeEEEEEEeccccc-Cc-CccceEEeeeecc--------ccCcc
Confidence 4556677 67888888874333 33 2 55 4789999999999766542 11 2346999754433 22223
Q ss_pred EEEEeecCCcEEEEeccCCCcEEEE
Q 001070 279 NQVVVLSQAGLLLFANAKKNAIYSV 303 (1165)
Q Consensus 279 ~sV~~~p~a~~ilLan~~r~aIYal 303 (1165)
...+..-||.+|-+ ...+.|-..
T Consensus 513 ~a~~fs~dGslla~--s~~~~Itiw 535 (792)
T KOG1963|consen 513 TALCFSQDGSLLAV--SFDDTITIW 535 (792)
T ss_pred cchhhcCCCcEEEE--ecCCEEEEe
Confidence 33445666754443 344444333
No 267
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.40 E-value=1.3 Score=55.62 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=25.6
Q ss_pred eeecCceEEEeecCCcEEEEeCcc--hhhHhhcCCcc
Q 001070 153 IAVNKHYVCYGLKGGNVRVLNLNT--ATRSLLRGHTK 187 (1165)
Q Consensus 153 IAVn~~yIayG~kdg~IRVwdi~t--~ir~llrGH~q 187 (1165)
=++|+..+|. ...+.|||||... +.+..++||.-
T Consensus 167 nyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs 202 (1081)
T KOG0309|consen 167 NYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVS 202 (1081)
T ss_pred cccCcchhhh-ccCCceEEEeccCCCcceEEecccce
Confidence 3456666663 4567899999985 88888999887
No 268
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=84.23 E-value=5.7 Score=48.43 Aligned_cols=48 Identities=15% Similarity=0.306 Sum_probs=35.1
Q ss_pred EEEeecCCCce---eEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEc
Q 001070 188 IKIWEDSKVAP---LIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWAS 242 (1165)
Q Consensus 188 VriWD~~~g~p---l~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~ 242 (1165)
+.||+.++|.. ..+||.++-+-|.||+|+ +|| | .| .|..|..|-||+-
T Consensus 224 ~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~--eng-d---vi-TgDS~G~i~Iw~~ 274 (626)
T KOG2106|consen 224 LYFWTLRGGSLVKRQGIFEKREKKFVLCVTFL--ENG-D---VI-TGDSGGNILIWSK 274 (626)
T ss_pred EEEEEccCCceEEEeeccccccceEEEEEEEc--CCC-C---EE-eecCCceEEEEeC
Confidence 66777777655 445666655689999995 333 3 55 4999999999996
No 269
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=83.60 E-value=1.6 Score=52.69 Aligned_cols=68 Identities=25% Similarity=0.523 Sum_probs=48.7
Q ss_pred CceEEEeecCCcEEEEeCcc-hhhHhhcCCccEEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCc
Q 001070 157 KHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTKIKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNR 235 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~t-~ir~llrGH~qVriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnr 235 (1165)
..|+++|+-=|+|-|||.++ .+-.++.|--. =|--|||| |+-|= |.+|| +|+
T Consensus 406 sEyVvSGSDCGhIFiW~K~t~eii~~MegDr~----------VVNCLEpH-------------P~~Pv---LAsSG-id~ 458 (559)
T KOG1334|consen 406 SEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH----------VVNCLEPH-------------PHLPV---LASSG-IDH 458 (559)
T ss_pred cceEEecCccceEEEEecchhHHHHHhhcccc----------eEeccCCC-------------CCCch---hhccC-Ccc
Confidence 58999999999999999999 77667766332 15558888 33332 55554 999
Q ss_pred eEEEeEccCcCCCCCC
Q 001070 236 EVKLWASASEEGWSLP 251 (1165)
Q Consensus 236 tIKLW~~a~~~~~~~~ 251 (1165)
.||||-.-+.+..+.+
T Consensus 459 DVKIWTP~~~er~~~~ 474 (559)
T KOG1334|consen 459 DVKIWTPLTAERATEP 474 (559)
T ss_pred ceeeecCCccccccCh
Confidence 9999998555444333
No 270
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=83.04 E-value=25 Score=47.13 Aligned_cols=201 Identities=17% Similarity=0.227 Sum_probs=110.8
Q ss_pred Cc-eEEEeecCCcEEEEeCcchhhH-hhcCCcc------------------------EEEeecCCCceeEEecCCCCCCc
Q 001070 157 KH-YVCYGLKGGNVRVLNLNTATRS-LLRGHTK------------------------IKIWEDSKVAPLIILKPHGGQPV 210 (1165)
Q Consensus 157 ~~-yIayG~kdg~IRVwdi~t~ir~-llrGH~q------------------------VriWD~~~g~pl~~lephdG~sV 210 (1165)
++ -|+|+...+.|-.||+.+..+. .++.-.+ +-+||.|=+.|+..|+-.+--++
T Consensus 1162 ~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i 1241 (1431)
T KOG1240|consen 1162 QSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPI 1241 (1431)
T ss_pred cceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCc
Confidence 55 8999999999999999984443 3333222 77999999999999984433477
Q ss_pred ceeEeecCCCCCCceEEEeecC-CCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecC--C
Q 001070 211 NSAQYLTAPNQAGHIILVTAGP-LNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQ--A 287 (1165)
Q Consensus 211 ~SVaFl~aP~~~d~~~lvtsGs-lnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~--a 287 (1165)
..|+-..-+.+.. ..|++|+ .+.+|-+|+..++ .|.++|--- ..++.-+.+.-..++-.|. .
T Consensus 1242 ~~v~~~~~~~~~S--~~vs~~~~~~nevs~wn~~~g------------~~~~vl~~s-~~~p~ls~~~Ps~~~~kp~~~~ 1306 (1431)
T KOG1240|consen 1242 RHVWLCPTYPQES--VSVSAGSSSNNEVSTWNMETG------------LRQTVLWAS-DGAPILSYALPSNDARKPDSLA 1306 (1431)
T ss_pred ceEEeeccCCCCc--eEEEecccCCCceeeeecccC------------cceEEEEcC-CCCcchhhhcccccCCCCCccc
Confidence 7776632222223 2466677 8999999998554 888888642 1111111111000000011 0
Q ss_pred cEEEEeccCCCcEEEEEeecCCCcccccccc----ccccccccceeeeeeccCC------CCcceEEEEEeehhhhhhhc
Q 001070 288 GLLLFANAKKNAIYSVHLGYGNNSAATRIDY----IAEFTVTMPVLSFTGTIDP------PSEHIIKLYCVQTQAIQQYS 357 (1165)
Q Consensus 288 ~~ilLan~~r~aIYalhl~~g~~~~~~r~dy----iaeF~v~~PILSft~~~d~------~ge~~vq~yCvQtqAIQqy~ 357 (1165)
+.+..-+-++.- -+.-|.+-...++|| +.+|.+.-|=++++..++. +|...++.|. |-|-.
T Consensus 1307 ~~~~~~~~~~~~----~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i-----~~~~t 1377 (1431)
T KOG1240|consen 1307 GISCGVCEKNGF----LLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFI-----IYQQT 1377 (1431)
T ss_pred ceeeecccCCce----eeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhh-----hhhhh
Confidence 111111111111 112233334444554 3457777777778777665 5666655432 22223
Q ss_pred cccccccCCCCCCCCCCCCCCCccc
Q 001070 358 LNLFQCLPPPAESGGLERPDSSVSN 382 (1165)
Q Consensus 358 l~~~~c~pp~~~~~~~e~~~~~~s~ 382 (1165)
..+.+-+- +.++....+++++..|
T Consensus 1378 v~~t~~~~-~~~~~~~~~~~ps~~H 1401 (1431)
T KOG1240|consen 1378 VGLTEALR-ENQKLRPGPSDPSTYH 1401 (1431)
T ss_pred cCchhhcc-cccccccCCCCCcccc
Confidence 33332222 4566777777888887
No 271
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.93 E-value=5.5 Score=47.37 Aligned_cols=123 Identities=12% Similarity=0.174 Sum_probs=76.1
Q ss_pred eeecCceEEEeecCCcEEEEeCcchhh-Hhhc---C--------------------------CccEEEeecCCCceeEEe
Q 001070 153 IAVNKHYVCYGLKGGNVRVLNLNTATR-SLLR---G--------------------------HTKIKIWEDSKVAPLIIL 202 (1165)
Q Consensus 153 IAVn~~yIayG~kdg~IRVwdi~t~ir-~llr---G--------------------------H~qVriWD~~~g~pl~~l 202 (1165)
++-||++|+|-..| .-||||.++... .-+. + |..|+.||.. .|
T Consensus 194 FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~------~w 266 (398)
T KOG0771|consen 194 FSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDIS------LW 266 (398)
T ss_pred eCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEee------ee
Confidence 77899999998888 999999998311 1111 1 1114443322 22
Q ss_pred cC---------CCC-CCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCc
Q 001070 203 KP---------HGG-QPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPR 272 (1165)
Q Consensus 203 ep---------hdG-~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~ 272 (1165)
.. -.+ +++.|++-. .+++|+.. |..+..|-|++. +=+|++-+-. +
T Consensus 267 ~~~~~l~~~~~~~~~~siSsl~VS-----~dGkf~Al-GT~dGsVai~~~---------------~~lq~~~~vk----~ 321 (398)
T KOG0771|consen 267 SGSNFLRLRKKIKRFKSISSLAVS-----DDGKFLAL-GTMDGSVAIYDA---------------KSLQRLQYVK----E 321 (398)
T ss_pred ccccccchhhhhhccCcceeEEEc-----CCCcEEEE-eccCCcEEEEEe---------------ceeeeeEeeh----h
Confidence 21 112 378888873 55676665 788999999997 3334444322 2
Q ss_pred cccccEEEEEeecCCcEEE-EeccCCCcEEEEEeec
Q 001070 273 VEEAFFNQVVVLSQAGLLL-FANAKKNAIYSVHLGY 307 (1165)
Q Consensus 273 ~~~aff~sV~~~p~a~~il-Lan~~r~aIYalhl~~ 307 (1165)
.|.-|+-.|.+.|+.+++. ++-..+-+|-.|-++|
T Consensus 322 aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 322 AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDK 357 (398)
T ss_pred hheeeeeeEEEcCCcCcccccccCCceeEEEEeecc
Confidence 5777999999999988654 4444445555555543
No 272
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=82.91 E-value=1.6 Score=50.92 Aligned_cols=80 Identities=18% Similarity=0.164 Sum_probs=54.0
Q ss_pred EEEeecCCC-----ceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcce---
Q 001070 188 IKIWEDSKV-----APLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKC--- 259 (1165)
Q Consensus 188 VriWD~~~g-----~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C--- 259 (1165)
|-+.|.|.+ -+.++|- | +-+|.|+--|+ -+.++|++ .+.+.+|||||+-.. +|
T Consensus 276 I~~iDLR~rnqG~~~~a~rly-h-~Ssvtslq~Lq----~s~q~Lma-S~M~gkikLyD~R~~------------K~~~~ 336 (425)
T KOG2695|consen 276 IFVIDLRCRNQGNGWCAQRLY-H-DSSVTSLQILQ----FSQQKLMA-SDMTGKIKLYDLRAT------------KCKKS 336 (425)
T ss_pred EEEEEeeecccCCCcceEEEE-c-Ccchhhhhhhc----cccceEee-ccCcCceeEeeehhh------------hcccc
Confidence 777887753 4566663 3 45888887762 14466886 569999999999444 88
Q ss_pred EEEEeccCCCCCccccccEEEEEeecCCcEEEE
Q 001070 260 TQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLF 292 (1165)
Q Consensus 260 ~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilL 292 (1165)
+++.|+|+..- =++-+-+++..++|+-
T Consensus 337 V~qYeGHvN~~------a~l~~~v~~eeg~I~s 363 (425)
T KOG2695|consen 337 VMQYEGHVNLS------AYLPAHVKEEEGSIFS 363 (425)
T ss_pred eeeeecccccc------cccccccccccceEEE
Confidence 99999987541 1234445677666654
No 273
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=82.66 E-value=5.3 Score=49.69 Aligned_cols=111 Identities=18% Similarity=0.214 Sum_probs=61.4
Q ss_pred cCceEEEeecCCcEEEEeCcchhhHhhcCCccEEEeecCCCceeEEecCCC-C--CCcceeEeecCCCCCCceEEEeecC
Q 001070 156 NKHYVCYGLKGGNVRVLNLNTATRSLLRGHTKIKIWEDSKVAPLIILKPHG-G--QPVNSAQYLTAPNQAGHIILVTAGP 232 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t~ir~llrGH~qVriWD~~~g~pl~~lephd-G--~sV~SVaFl~aP~~~d~~~lvtsGs 232 (1165)
++.+||.|..+|+|-+||+....+.+ ...+..++ . ++|..|.|+..+.+- . +.|++
T Consensus 254 ~p~ll~gG~y~GqV~lWD~~~~~~~~-----------------~s~ls~~~~sh~~~v~~vvW~~~~~~~--~--f~s~s 312 (555)
T KOG1587|consen 254 DPNLLAGGCYNGQVVLWDLRKGSDTP-----------------PSGLSALEVSHSEPVTAVVWLQNEHNT--E--FFSLS 312 (555)
T ss_pred CcceEEeeccCceEEEEEccCCCCCC-----------------CcccccccccCCcCeEEEEEeccCCCC--c--eEEEe
Confidence 46777778888887777765422211 22222222 2 367777776544442 3 33688
Q ss_pred CCceEEEeEccCcCCCCCCCCC-----------CCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccC
Q 001070 233 LNREVKLWASASEEGWSLPTHA-----------ESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAK 296 (1165)
Q Consensus 233 lnrtIKLW~~a~~~~~~~~~~~-----------~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~ 296 (1165)
.|..|+.|+... ...|.+. +.|+|.++..++=.. .--+..++--+.|+|.-++.+
T Consensus 313 sDG~i~~W~~~~---l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~------~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 313 SDGSICSWDTDM---LSLPVEGLLLESKKHKGQQSSKAVGATSLKFEP------TDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred cCCcEeeeeccc---cccchhhcccccccccccccccccceeeEeecc------CCCceEEEEcCCcEEEEEecc
Confidence 899999998743 2222221 247777766542211 112234556677777766654
No 274
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=82.33 E-value=8.2 Score=47.41 Aligned_cols=121 Identities=19% Similarity=0.270 Sum_probs=80.5
Q ss_pred ccccccEee-----ecCceEEEeecCCcEEEEeCcchhhHhhcCCcc--EEEeecCCCceeEEecCCCCCCcceeEeecC
Q 001070 146 ELLIGRQIA-----VNKHYVCYGLKGGNVRVLNLNTATRSLLRGHTK--IKIWEDSKVAPLIILKPHGGQPVNSAQYLTA 218 (1165)
Q Consensus 146 ~~~~GR~IA-----Vn~~yIayG~kdg~IRVwdi~t~ir~llrGH~q--VriWD~~~g~pl~~lephdG~sV~SVaFl~a 218 (1165)
.|+.|.+|. .|-+-|=.-+.||.|--.|-++.--.++.|-++ .||||-. |.+|-.=.+|+ +++.|||| +
T Consensus 161 l~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~e-y~ITSva~--n 236 (737)
T KOG1524|consen 161 VFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEE-YAITSVAF--N 236 (737)
T ss_pred EEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhc-cceeeeee--c
Confidence 345566644 477888888899999888877766668889888 8999987 67777777885 79999999 5
Q ss_pred CCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCC
Q 001070 219 PNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKN 298 (1165)
Q Consensus 219 P~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~ 298 (1165)
|+ ..|+| ||-| |++|.+. +. ...| -++-++||--+-.+.....
T Consensus 237 pd---~~~~v--~S~n---------------------------t~R~~~p---~~-GSif-nlsWS~DGTQ~a~gt~~G~ 279 (737)
T KOG1524|consen 237 PE---KDYLL--WSYN---------------------------TARFSSP---RV-GSIF-NLSWSADGTQATCGTSTGQ 279 (737)
T ss_pred cc---cceee--eeee---------------------------eeeecCC---Cc-cceE-EEEEcCCCceeeccccCce
Confidence 66 34555 4443 3334221 11 1333 3455677766666666666
Q ss_pred cEEEEEeec
Q 001070 299 AIYSVHLGY 307 (1165)
Q Consensus 299 aIYalhl~~ 307 (1165)
.|.|--++.
T Consensus 280 v~~A~~ieq 288 (737)
T KOG1524|consen 280 LIVAYAIEQ 288 (737)
T ss_pred EEEeeeehh
Confidence 665544443
No 275
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=81.41 E-value=39 Score=41.44 Aligned_cols=161 Identities=19% Similarity=0.250 Sum_probs=89.7
Q ss_pred Cceee----cCCceEEecccCCC--------CCCCCCCcccccccccCCCcccccccEeee-----------cCceEEEe
Q 001070 107 YGKRV----FGDYVAYDVDAVEE--------GREPTQQLEVNPITKYGSDPELLIGRQIAV-----------NKHYVCYG 163 (1165)
Q Consensus 107 ~Gr~l----~g~~~~~dVd~~~~--------ge~~~pqlev~pIt~Y~sd~~~~~GR~IAV-----------n~~yIayG 163 (1165)
+|||+ .|+-..||.++-.- =+--+-+-+..--.||--|-....|..||. ++.|..--
T Consensus 277 DGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv 356 (668)
T COG4946 277 DGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQV 356 (668)
T ss_pred CCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeEEc
Confidence 78888 56888899876322 111101222333346666666666666653 11222222
Q ss_pred ecCCcEEEEeCcchhhHhhcCCcc---EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEe
Q 001070 164 LKGGNVRVLNLNTATRSLLRGHTK---IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLW 240 (1165)
Q Consensus 164 ~kdg~IRVwdi~t~ir~llrGH~q---VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW 240 (1165)
-+.|.||---|.+.-..+..|... +-|+|-.+|. +.++++.=| -|.+|.- . ++++++|+ .|....||
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg-~I~av~v--s---~dGK~~vv---aNdr~el~ 426 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLG-NIEAVKV--S---PDGKKVVV---ANDRFELW 426 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCcc-ceEEEEE--c---CCCcEEEE---EcCceEEE
Confidence 223445555554422244444433 7888887665 788886545 6888887 3 44465776 35555666
Q ss_pred EccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEecc
Q 001070 241 ASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANA 295 (1165)
Q Consensus 241 ~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~ 295 (1165)
-.+...| + .+-++ +.+.+++...+.+|.++||--|-.
T Consensus 427 vididng----------n-v~~id-------kS~~~lItdf~~~~nsr~iAYafP 463 (668)
T COG4946 427 VIDIDNG----------N-VRLID-------KSEYGLITDFDWHPNSRWIAYAFP 463 (668)
T ss_pred EEEecCC----------C-eeEec-------ccccceeEEEEEcCCceeEEEecC
Confidence 5544322 1 11111 134678888899999999876654
No 276
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=81.13 E-value=1.2 Score=30.88 Aligned_cols=18 Identities=11% Similarity=0.466 Sum_probs=16.1
Q ss_pred cCceEEEeecCCcEEEEe
Q 001070 156 NKHYVCYGLKGGNVRVLN 173 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwd 173 (1165)
++.++++|..||.|||||
T Consensus 23 ~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 23 DGKYLASASDDGTIKLWD 40 (40)
T ss_pred CCCEEEEecCCCeEEEcC
Confidence 367999999999999997
No 277
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=81.13 E-value=4 Score=51.66 Aligned_cols=6 Identities=17% Similarity=0.379 Sum_probs=2.2
Q ss_pred CCCCCC
Q 001070 369 ESGGLE 374 (1165)
Q Consensus 369 ~~~~~e 374 (1165)
.|..+|
T Consensus 837 ~~~~~e 842 (894)
T KOG0132|consen 837 KNTSVE 842 (894)
T ss_pred cccccc
Confidence 333333
No 278
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=81.11 E-value=2.4 Score=54.75 Aligned_cols=84 Identities=19% Similarity=0.264 Sum_probs=60.7
Q ss_pred ccEeeecCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc----------------------EEEeecCCCceeE-EecCC
Q 001070 150 GRQIAVNKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK----------------------IKIWEDSKVAPLI-ILKPH 205 (1165)
Q Consensus 150 GR~IAVn~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q----------------------VriWD~~~g~pl~-~leph 205 (1165)
+-+++.+.=||+.|+--|.|-||+-+- +.-.-|.||+. +|+|++.++.-+. +.=+|
T Consensus 138 ~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH 217 (967)
T KOG0974|consen 138 IIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGH 217 (967)
T ss_pred EEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccc
Confidence 444666788999999999999999986 55557999999 9999998864222 11123
Q ss_pred CCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEc
Q 001070 206 GGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWAS 242 (1165)
Q Consensus 206 dG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~ 242 (1165)
.+ -|..+.|+ |+ . ++ +++-|-|.++|..
T Consensus 218 sa-Rvw~~~~~--~n----~-i~-t~gedctcrvW~~ 245 (967)
T KOG0974|consen 218 SA-RVWACCFL--PN----R-II-TVGEDCTCRVWGV 245 (967)
T ss_pred cc-eeEEEEec--cc----e-eE-EeccceEEEEEec
Confidence 22 56677775 33 1 44 5889999999954
No 279
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.57 E-value=3.2 Score=54.12 Aligned_cols=65 Identities=20% Similarity=0.403 Sum_probs=49.9
Q ss_pred eeecCceEEEeecCCcEEEEeCcchhhH----------------------hhcCCcc--EEEeecCCCceeEEecCCCCC
Q 001070 153 IAVNKHYVCYGLKGGNVRVLNLNTATRS----------------------LLRGHTK--IKIWEDSKVAPLIILKPHGGQ 208 (1165)
Q Consensus 153 IAVn~~yIayG~kdg~IRVwdi~t~ir~----------------------llrGH~q--VriWD~~~g~pl~~lephdG~ 208 (1165)
+|+-+.+|++|..-|+|=..|..++++. ++-||.. |.|||+..+-+++.+.-| |+
T Consensus 95 ~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~-~a 173 (1206)
T KOG2079|consen 95 SAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH-GA 173 (1206)
T ss_pred eeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec-CC
Confidence 4556788999999887766666665554 4444444 999999999999988876 89
Q ss_pred CcceeEeecC
Q 001070 209 PVNSAQYLTA 218 (1165)
Q Consensus 209 sV~SVaFl~a 218 (1165)
++.+|.|+..
T Consensus 174 p~t~vi~v~~ 183 (1206)
T KOG2079|consen 174 PVTGVIFVGR 183 (1206)
T ss_pred ccceEEEEEE
Confidence 9999999754
No 280
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=79.98 E-value=7.2 Score=46.47 Aligned_cols=14 Identities=21% Similarity=0.442 Sum_probs=6.7
Q ss_pred CCCCCCcccccccc
Q 001070 8 QSPNQNQKQFDMRN 21 (1165)
Q Consensus 8 ~~~~~~~~~~~~~~ 21 (1165)
+.-.+|++.|+-.|
T Consensus 286 ~~eden~~~~~~sn 299 (487)
T KOG4672|consen 286 RPEDENASSFQNSN 299 (487)
T ss_pred chhhhccccccccc
Confidence 33445555555444
No 281
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=79.58 E-value=14 Score=43.57 Aligned_cols=79 Identities=13% Similarity=0.060 Sum_probs=54.0
Q ss_pred CCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccC-CCcEEEEEeecCCC
Q 001070 232 PLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAK-KNAIYSVHLGYGNN 310 (1165)
Q Consensus 232 slnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~-r~aIYalhl~~g~~ 310 (1165)
.-+..|.+||.++. +-+.++......+-- .-.+-..++++|+++||+++|.. .++|-++-++.+.
T Consensus 74 ~~~d~V~v~D~~t~------------~~~~~i~~p~~p~~~-~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k- 139 (352)
T TIGR02658 74 KRTDYVEVIDPQTH------------LPIADIELPEGPRFL-VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA- 139 (352)
T ss_pred CCCCEEEEEECccC------------cEEeEEccCCCchhh-ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc-
Confidence 38899999998665 777788865432200 01233367899999999999988 9999999888532
Q ss_pred ccccccccccccccccceeee
Q 001070 311 SAATRIDYIAEFTVTMPVLSF 331 (1165)
Q Consensus 311 ~~~~r~dyiaeF~v~~PILSf 331 (1165)
.++|+.|.-+.+-+
T Consensus 140 -------vv~ei~vp~~~~vy 153 (352)
T TIGR02658 140 -------FVRMMDVPDCYHIF 153 (352)
T ss_pred -------EEEEEeCCCCcEEE
Confidence 35555554433333
No 282
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=79.56 E-value=1.1e+02 Score=34.17 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 814 RTQQITGLITNLINKDLTASLEKL 837 (1165)
Q Consensus 814 RQ~qLL~LVS~~LnktL~~nLEk~ 837 (1165)
.|++.|+--++-|.+.+|.+.+-+
T Consensus 46 ~Q~q~l~~Y~~~lr~~lP~~~~~a 69 (229)
T PF11101_consen 46 EQQQALQQYQQGLRQQLPWVVQLA 69 (229)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 445555555555555565554433
No 283
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=79.37 E-value=3 Score=47.03 Aligned_cols=7 Identities=43% Similarity=0.966 Sum_probs=3.4
Q ss_pred HHHHHhh
Q 001070 86 PQILALL 92 (1165)
Q Consensus 86 ~~~~~~l 92 (1165)
+-.|++|
T Consensus 238 PnMldVL 244 (253)
T PF05308_consen 238 PNMLDVL 244 (253)
T ss_pred ccHHHHH
Confidence 3445555
No 284
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=79.36 E-value=29 Score=41.15 Aligned_cols=138 Identities=14% Similarity=0.136 Sum_probs=85.3
Q ss_pred cccccccCC--CcccccccEeeecCceEEEeecCCcEEEEeCcchhhHhhcCCccEEEeecCC-CceeEEecCCCCCCcc
Q 001070 135 VNPITKYGS--DPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNTATRSLLRGHTKIKIWEDSK-VAPLIILKPHGGQPVN 211 (1165)
Q Consensus 135 v~pIt~Y~s--d~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t~ir~llrGH~qVriWD~~~-g~pl~~lephdG~sV~ 211 (1165)
+..+.++.. +|.+.-.+....||+++..-.+ |.|.+.|....--..+ +.|..-+ +..-+-|+|..=++
T Consensus 182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~------~~~~~~~~~~~~~~wrP~g~q~-- 252 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL------PAIEAFTEAEKADGWRPGGWQQ-- 252 (352)
T ss_pred EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceec------ceeeeccccccccccCCCccee--
Confidence 444444333 4444444445558888877777 9999999776221111 3565432 22234577752123
Q ss_pred eeEeecCCCCCCceEEEeec---------CCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEE
Q 001070 212 SAQYLTAPNQAGHIILVTAG---------PLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVV 282 (1165)
Q Consensus 212 SVaFl~aP~~~d~~~lvtsG---------slnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~ 282 (1165)
++| .|++.- |.+.+ ...++|-++|. ++++.+.++.. + .-..+++
T Consensus 253 -ia~--~~dg~~---lyV~~~~~~~~thk~~~~~V~ViD~------------~t~kvi~~i~v-------G--~~~~~ia 305 (352)
T TIGR02658 253 -VAY--HRARDR---IYLLADQRAKWTHKTASRFLFVVDA------------KTGKRLRKIEL-------G--HEIDSIN 305 (352)
T ss_pred -EEE--cCCCCE---EEEEecCCccccccCCCCEEEEEEC------------CCCeEEEEEeC-------C--CceeeEE
Confidence 888 455533 33322 12247777775 45699999986 2 3445899
Q ss_pred eecCCc-EEEEeccCCCcEEEEEeecC
Q 001070 283 VLSQAG-LLLFANAKKNAIYSVHLGYG 308 (1165)
Q Consensus 283 ~~p~a~-~ilLan~~r~aIYalhl~~g 308 (1165)
++||+. +|+++|...+.|+++-.+-+
T Consensus 306 vS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 306 VSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred ECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 999999 99999999999998876643
No 285
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=79.26 E-value=4.9 Score=49.31 Aligned_cols=120 Identities=19% Similarity=0.437 Sum_probs=77.0
Q ss_pred ceeecCCceEEecccCCCCCCCC-CCcccccccccCCCcccccccEeeecCceEEEeecCCcEEEEeCcchh--------
Q 001070 108 GKRVFGDYVAYDVDAVEEGREPT-QQLEVNPITKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNTAT-------- 178 (1165)
Q Consensus 108 Gr~l~g~~~~~dVd~~~~ge~~~-pqlev~pIt~Y~sd~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t~i-------- 178 (1165)
|..--|+.-.|=.++. ||..- |=+.-.||-.|.|.+ .||.++| |||----.+-|+|..-..
T Consensus 244 n~SYYGEq~Lyll~t~--g~s~~V~L~k~GPVhdv~W~~---s~~EF~V-----vyGfMPAkvtifnlr~~~v~df~egp 313 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQ--GESVSVPLLKEGPVHDVTWSP---SGREFAV-----VYGFMPAKVTIFNLRGKPVFDFPEGP 313 (566)
T ss_pred CccccccceEEEEEec--CceEEEecCCCCCceEEEECC---CCCEEEE-----EEecccceEEEEcCCCCEeEeCCCCC
Confidence 4444566666655554 54430 123367999999988 6999998 999887777777776422
Q ss_pred --hHhhcCCcc-------------EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecC-----CCceEE
Q 001070 179 --RSLLRGHTK-------------IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGP-----LNREVK 238 (1165)
Q Consensus 179 --r~llrGH~q-------------VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGs-----lnrtIK 238 (1165)
+..|.-|+. |-|||+.+--.+.+++-.| +.| +.| +||| .|++|+-- .|.-||
T Consensus 314 RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~-~eW--~PdG---e~flTATTaPRlrvdNg~K 385 (566)
T KOG2315|consen 314 RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTV-FEW--SPDG---EYFLTATTAPRLRVDNGIK 385 (566)
T ss_pred ccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceE-EEE--cCCC---cEEEEEeccccEEecCCeE
Confidence 224444444 9999999876777776442 121 234 4555 34554433 588999
Q ss_pred EeEccCc
Q 001070 239 LWASASE 245 (1165)
Q Consensus 239 LW~~a~~ 245 (1165)
||+..+.
T Consensus 386 iwhytG~ 392 (566)
T KOG2315|consen 386 IWHYTGS 392 (566)
T ss_pred EEEecCc
Confidence 9998554
No 286
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=79.12 E-value=21 Score=41.10 Aligned_cols=81 Identities=12% Similarity=0.037 Sum_probs=42.1
Q ss_pred CceEEEeecCCcEEEEeCcc-hhhHhhc--CCcc----------------EEEeecCCCceeEEecCCCCCCcceeEeec
Q 001070 157 KHYVCYGLKGGNVRVLNLNT-ATRSLLR--GHTK----------------IKIWEDSKVAPLIILKPHGGQPVNSAQYLT 217 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~t-~ir~llr--GH~q----------------VriWD~~~g~pl~~lephdG~sV~SVaFl~ 217 (1165)
+.+|..+..+|.++.||+++ .++.... ++.. |..+|..+|..+-..+...+..+.+.+.
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i-- 318 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV-- 318 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--
Confidence 44555667788888888876 3322211 1111 6666666665443332222222222222
Q ss_pred CCCCCCceEEEeecCCCceEEEeEccCc
Q 001070 218 APNQAGHIILVTAGPLNREVKLWASASE 245 (1165)
Q Consensus 218 aP~~~d~~~lvtsGslnrtIKLW~~a~~ 245 (1165)
-+.. ++ .|+.|..|.+||..++
T Consensus 319 ----~g~~-l~-~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 319 ----VGGY-LV-VGDFEGYLHWLSREDG 340 (377)
T ss_pred ----ECCE-EE-EEeCCCEEEEEECCCC
Confidence 1222 33 3668888988886544
No 287
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=78.73 E-value=35 Score=39.98 Aligned_cols=93 Identities=13% Similarity=0.166 Sum_probs=59.0
Q ss_pred EEEeecCCCc--eeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCC-ceEEEeEccCcCCCCCCCCCCCcceEEEEe
Q 001070 188 IKIWEDSKVA--PLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLN-REVKLWASASEEGWSLPTHAESWKCTQTLD 264 (1165)
Q Consensus 188 VriWD~~~g~--pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGsln-rtIKLW~~a~~~~~~~~~~~~~w~C~QTLe 264 (1165)
|+|-|...-. +-.+...||+ .+-+|+.- .+|- +|+++|.+ +=|+|||...+ .-+|.|+
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln-----~~Gt-~vATaStkGTLIRIFdt~~g------------~~l~E~R 221 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDS-DIACVALN-----LQGT-LVATASTKGTLIRIFDTEDG------------TLLQELR 221 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccC-ceeEEEEc-----CCcc-EEEEeccCcEEEEEEEcCCC------------cEeeeee
Confidence 8888766533 2356677865 77778772 3334 45555555 55899997554 6677776
Q ss_pred ccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEee
Q 001070 265 LKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLG 306 (1165)
Q Consensus 265 ~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~ 306 (1165)
= ....+=...++++|++.||-+|.-| -.|..+.|.
T Consensus 222 R------G~d~A~iy~iaFSp~~s~LavsSdK-gTlHiF~l~ 256 (346)
T KOG2111|consen 222 R------GVDRADIYCIAFSPNSSWLAVSSDK-GTLHIFSLR 256 (346)
T ss_pred c------CCchheEEEEEeCCCccEEEEEcCC-CeEEEEEee
Confidence 2 1223444599999999999887544 455444444
No 288
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=78.72 E-value=82 Score=32.21 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 001070 744 MQDMLNQLMTMQKELQKQMSNLV 766 (1165)
Q Consensus 744 mq~~l~ql~~~qke~qkqm~~~v 766 (1165)
|.+.++.+...-.++..++..++
T Consensus 3 l~~~~~~l~~~~~~l~~~l~~~~ 25 (202)
T PF01442_consen 3 LDDRLDSLSSRTEELEERLEELS 25 (202)
T ss_dssp HHHHHHHHHHHHHHHHHCHCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666533
No 289
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=78.65 E-value=25 Score=40.79 Aligned_cols=140 Identities=13% Similarity=0.074 Sum_probs=74.2
Q ss_pred ccEeeec---CceEEEeecCCcEEEEeCcchhhHhhcCCcc---------EEEeecCCCce-eEEecCCCCCC---ccee
Q 001070 150 GRQIAVN---KHYVCYGLKGGNVRVLNLNTATRSLLRGHTK---------IKIWEDSKVAP-LIILKPHGGQP---VNSA 213 (1165)
Q Consensus 150 GR~IAVn---~~yIayG~kdg~IRVwdi~t~ir~llrGH~q---------VriWD~~~g~p-l~~lephdG~s---V~SV 213 (1165)
++++-|| ++.+.+-.+.|..++|..-..+-.+..-+.+ +++||..++.. ....++.+|.. -+-+
T Consensus 37 ~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~ 116 (307)
T COG3386 37 GALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDG 116 (307)
T ss_pred CEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEeccccCCCCcCCCCce
Confidence 3445554 5555666667777777766533332222222 77777655544 33333334432 1222
Q ss_pred EeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCC--CCccccccEEEEEeecCCcEEE
Q 001070 214 QYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSA--KPRVEEAFFNQVVVLSQAGLLL 291 (1165)
Q Consensus 214 aFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~--~~~~~~aff~sV~~~p~a~~il 291 (1165)
-. .+++.|.++.... |+ .+..+ ..+.+ |+..+.-.... ...++-.+=|.++++||+..+.
T Consensus 117 ~v-----~pdG~~wfgt~~~------~~--~~~~~----~~~~G-~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly 178 (307)
T COG3386 117 VV-----DPDGRIWFGDMGY------FD--LGKSE----ERPTG-SLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLY 178 (307)
T ss_pred eE-----cCCCCEEEeCCCc------cc--cCccc----cCCcc-eEEEEcCCCCEEEeecCcEEecCceEECCCCCEEE
Confidence 22 2445556654432 22 11111 11112 33333311110 1112245678999999999999
Q ss_pred EeccCCCcEEEEEeec
Q 001070 292 FANAKKNAIYSVHLGY 307 (1165)
Q Consensus 292 Lan~~r~aIYalhl~~ 307 (1165)
++|..++.||++.++.
T Consensus 179 ~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 179 VADTPANRIHRYDLDP 194 (307)
T ss_pred EEeCCCCeEEEEecCc
Confidence 9999999999999985
No 290
>PRK04043 tolB translocation protein TolB; Provisional
Probab=78.24 E-value=24 Score=42.27 Aligned_cols=127 Identities=11% Similarity=0.135 Sum_probs=69.5
Q ss_pred eeecCce-EEEee---cCCcEEEEeCcc-hhhHh--hcCCcc----------------------EEEeecCCCceeEEec
Q 001070 153 IAVNKHY-VCYGL---KGGNVRVLNLNT-ATRSL--LRGHTK----------------------IKIWEDSKVAPLIILK 203 (1165)
Q Consensus 153 IAVn~~y-IayG~---kdg~IRVwdi~t-~ir~l--lrGH~q----------------------VriWD~~~g~pl~~le 203 (1165)
.+-||++ |+|.. ++..|.++|+.+ ..+.| +.|... |.++|..+|. +.++.
T Consensus 195 wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~-~~~LT 273 (419)
T PRK04043 195 WANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT-LTQIT 273 (419)
T ss_pred ECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc-EEEcc
Confidence 4557875 66532 246799999998 33333 233322 5666766665 55666
Q ss_pred CCCCCCcceeEeecCCCCCCceEEEeecC-CCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEE
Q 001070 204 PHGGQPVNSAQYLTAPNQAGHIILVTAGP-LNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVV 282 (1165)
Q Consensus 204 phdG~sV~SVaFl~aP~~~d~~~lvtsGs-lnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~ 282 (1165)
.+.|. ..+..| +|||.- + ++++.- ....|-+++++++ .. +.+.+. + . ++ ..
T Consensus 274 ~~~~~-d~~p~~--SPDG~~-I-~F~Sdr~g~~~Iy~~dl~~g------------~~-~rlt~~------g--~-~~-~~ 325 (419)
T PRK04043 274 NYPGI-DVNGNF--VEDDKR-I-VFVSDRLGYPNIFMKKLNSG------------SV-EQVVFH------G--K-NN-SS 325 (419)
T ss_pred cCCCc-cCccEE--CCCCCE-E-EEEECCCCCceEEEEECCCC------------Ce-EeCccC------C--C-cC-ce
Confidence 55442 234467 566533 3 344432 2235666666443 22 223321 1 1 12 36
Q ss_pred eecCCcEEEEeccCC--------CcEEEEEeecC
Q 001070 283 VLSQAGLLLFANAKK--------NAIYSVHLGYG 308 (1165)
Q Consensus 283 ~~p~a~~ilLan~~r--------~aIYalhl~~g 308 (1165)
.+|++++|+...... ..||.+.++-|
T Consensus 326 ~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g 359 (419)
T PRK04043 326 VSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD 359 (419)
T ss_pred ECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence 799999887776543 46888776543
No 291
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=77.95 E-value=3.2 Score=49.70 Aligned_cols=10 Identities=40% Similarity=0.713 Sum_probs=6.0
Q ss_pred hHHHHHhhcCC
Q 001070 85 GPQILALLNNN 95 (1165)
Q Consensus 85 ~~~~~~~l~~~ 95 (1165)
|| |.|-||.+
T Consensus 265 ~A-lFaqlNqG 274 (480)
T KOG2675|consen 265 GA-LFAQLNQG 274 (480)
T ss_pred HH-HHHHHhcc
Confidence 55 66666655
No 292
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=77.15 E-value=55 Score=38.75 Aligned_cols=90 Identities=13% Similarity=0.144 Sum_probs=62.6
Q ss_pred CCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCC-CCCccccccEEEEEee
Q 001070 206 GGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSS-AKPRVEEAFFNQVVVL 284 (1165)
Q Consensus 206 dG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s-~~~~~~~aff~sV~~~ 284 (1165)
+|.+...|++. .+++||+++-=.-..|.+.-+.. ++..|.-+|++.-..+ ...+.+..-+..+.++
T Consensus 87 ~g~~p~yvsvd-----~~g~~vf~AnY~~g~v~v~p~~~--------dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t 153 (346)
T COG2706 87 PGSPPCYVSVD-----EDGRFVFVANYHSGSVSVYPLQA--------DGSLQPVVQVVKHTGSGPHERQESPHVHSANFT 153 (346)
T ss_pred CCCCCeEEEEC-----CCCCEEEEEEccCceEEEEEccc--------CCccccceeeeecCCCCCCccccCCccceeeeC
Confidence 46666777773 56677887655556777766533 3456788888875333 2233445557778899
Q ss_pred cCCcEEEEeccCCCcEEEEEeecC
Q 001070 285 SQAGLLLFANAKKNAIYSVHLGYG 308 (1165)
Q Consensus 285 p~a~~ilLan~~r~aIYalhl~~g 308 (1165)
|++++|++-|..---||..-++-|
T Consensus 154 P~~~~l~v~DLG~Dri~~y~~~dg 177 (346)
T COG2706 154 PDGRYLVVPDLGTDRIFLYDLDDG 177 (346)
T ss_pred CCCCEEEEeecCCceEEEEEcccC
Confidence 999999999999888888877743
No 293
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=75.71 E-value=99 Score=31.60 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=23.6
Q ss_pred hHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001070 773 EGRRLEASLGR---GIEKAVKASTDALWARFHEENARNEKLLRDRTQQITGL 821 (1165)
Q Consensus 773 E~kklE~~L~~---~ieK~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~L 821 (1165)
.+..++.+|.. .+...|....+++..+|...-.........+.+.+...
T Consensus 13 ~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 64 (202)
T PF01442_consen 13 RTEELEERLEELSDEIADRLAEEIEALSERLESELEELSDRLEERLDEVKER 64 (202)
T ss_dssp HHHHHHHCHCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555443 44455555555555555554444444444444444333
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=75.62 E-value=15 Score=43.82 Aligned_cols=93 Identities=14% Similarity=0.178 Sum_probs=60.5
Q ss_pred EEEeecCCCceeEEecCCCCC--CcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEec
Q 001070 188 IKIWEDSKVAPLIILKPHGGQ--PVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDL 265 (1165)
Q Consensus 188 VriWD~~~g~pl~~lephdG~--sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~ 265 (1165)
+.||.+.+|++.-.+ || =|+.|||. ||+ +|++| .||-=|||-+-.+ +. .=+.+|-
T Consensus 134 ~di~s~~~~~~~~~l----GhvSml~dVavS--~D~---~~Iit---aDRDEkIRvs~yp------a~----f~Iesfc- 190 (390)
T KOG3914|consen 134 FDILSADSGRCEPIL----GHVSMLLDVAVS--PDD---QFIIT---ADRDEKIRVSRYP------AT----FVIESFC- 190 (390)
T ss_pred eeeecccccCcchhh----hhhhhhheeeec--CCC---CEEEE---ecCCceEEEEecC------cc----cchhhhc-
Confidence 556665555543333 66 78999994 444 77898 3555555555222 10 1112222
Q ss_pred cCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEeecCCCc
Q 001070 266 KSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGYGNNS 311 (1165)
Q Consensus 266 ~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~g~~~ 311 (1165)
-||++|+..+++.+. +.|++.---+.||+-.+..|+..
T Consensus 191 ------lGH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 191 ------LGHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred ------cccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCcc
Confidence 389999988877654 44888888899999999998884
No 295
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=75.47 E-value=0.91 Score=52.48 Aligned_cols=7 Identities=43% Similarity=0.615 Sum_probs=0.0
Q ss_pred HHHhhcC
Q 001070 88 ILALLNN 94 (1165)
Q Consensus 88 ~~~~l~~ 94 (1165)
|++=||.
T Consensus 265 lFaeLN~ 271 (312)
T PF01213_consen 265 LFAELNQ 271 (312)
T ss_dssp -------
T ss_pred HHHHHhc
Confidence 4444443
No 296
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=73.78 E-value=7.9 Score=47.27 Aligned_cols=95 Identities=17% Similarity=0.317 Sum_probs=58.8
Q ss_pred cccccccCCCcccccccEeeecCceEEEeecCCcEEEEeCcchhhHh----------hcCCcc-------------EEEe
Q 001070 135 VNPITKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNTATRSL----------LRGHTK-------------IKIW 191 (1165)
Q Consensus 135 v~pIt~Y~sd~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t~ir~l----------lrGH~q-------------VriW 191 (1165)
-.||-.|+|+| ++++++| |+|.-+-.|-++|+.+++|.. |.-|+. |-||
T Consensus 274 ~~pVhdf~W~p---~S~~F~v-----i~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~ 345 (561)
T COG5354 274 KDPVHDFTWEP---LSSRFAV-----ISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIF 345 (561)
T ss_pred cccceeeeecc---cCCceeE-----EecccccceeecccccceEEecCCcccccccccCcccEEEEecCCccccceEEe
Confidence 35888899988 7899997 899988888888888766542 222322 6677
Q ss_pred ecCCCce-eEEecCCCCCCcceeEeecCCCCCCceEEEeecC-----CCceEEEeEccCc
Q 001070 192 EDSKVAP-LIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGP-----LNREVKLWASASE 245 (1165)
Q Consensus 192 D~~~g~p-l~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGs-----lnrtIKLW~~a~~ 245 (1165)
|.....- +..+.+.+ -.-+-| . ||+.|+.++-. .|..|||||..+.
T Consensus 346 ~~~~rf~~~~~~~~~n---~s~~~w--s---pd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 346 DPAGRFKVAGAFNGLN---TSYCDW--S---PDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred ccCCceEEEEEeecCC---ceEeec--c---CCceEEEecCCCcccccCcceEEEEecCc
Confidence 7665433 22554331 111123 2 33344443322 5789999999665
No 297
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=73.04 E-value=3 Score=56.91 Aligned_cols=72 Identities=14% Similarity=0.356 Sum_probs=47.7
Q ss_pred cCceEEEeecCCcEEEEeCcc-hhhHhhcCCccEEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCC
Q 001070 156 NKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTKIKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLN 234 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t-~ir~llrGH~qVriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGsln 234 (1165)
+-..|.+|.|+|.|.||||.. .+|+++.. ||.+ + .++.|+.-
T Consensus 2347 ~~qllisggr~G~v~l~D~rqrql~h~~~~------~~~~----------------------------~---~f~~~ss~ 2389 (2439)
T KOG1064|consen 2347 KHQLLISGGRKGEVCLFDIRQRQLRHTFQA------LDTR----------------------------E---YFVTGSSE 2389 (2439)
T ss_pred cceEEEecCCcCcEEEeehHHHHHHHHhhh------hhhh----------------------------h---eeeccCcc
Confidence 345566788888888888877 77777643 4421 1 34469999
Q ss_pred ceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEE
Q 001070 235 REVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQV 281 (1165)
Q Consensus 235 rtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV 281 (1165)
..||||.+..- .-+.||.+.++ +..||..+
T Consensus 2390 g~ikIw~~s~~------------~ll~~~p~e~a-----k~gfFr~~ 2419 (2439)
T KOG1064|consen 2390 GNIKIWRLSEF------------GLLHTFPSEHA-----KQGFFRNI 2419 (2439)
T ss_pred cceEEEEcccc------------chhhcCchhhc-----ccchhhhc
Confidence 99999998554 45567776552 34677555
No 298
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=71.17 E-value=3.4 Score=50.04 Aligned_cols=6 Identities=50% Similarity=0.850 Sum_probs=2.4
Q ss_pred HHHHHH
Q 001070 822 ITNLIN 827 (1165)
Q Consensus 822 VS~~Ln 827 (1165)
|-|+||
T Consensus 483 IGNfLn 488 (817)
T KOG1925|consen 483 IGNFLN 488 (817)
T ss_pred Hhcccc
Confidence 334443
No 299
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=70.56 E-value=7.6 Score=48.03 Aligned_cols=61 Identities=23% Similarity=0.502 Sum_probs=50.0
Q ss_pred CceEEEeecCCcEEEEeCcchhhHhhcCCcc-------------------------EEEeecCCCceeEEecCCCCCCcc
Q 001070 157 KHYVCYGLKGGNVRVLNLNTATRSLLRGHTK-------------------------IKIWEDSKVAPLIILKPHGGQPVN 211 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~t~ir~llrGH~q-------------------------VriWD~~~g~pl~~lephdG~sV~ 211 (1165)
|=-++-|..+|.|-|+|+.+..-.+.+.|.. +||||-.+|.+....||.- .++
T Consensus 240 gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~--~lN 317 (703)
T KOG2321|consen 240 GLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTS--DLN 317 (703)
T ss_pred ceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccccC--CcC
Confidence 4445679999999999999877777777765 8999999999999999873 599
Q ss_pred eeEeecCCCC
Q 001070 212 SAQYLTAPNQ 221 (1165)
Q Consensus 212 SVaFl~aP~~ 221 (1165)
-++|+ |++
T Consensus 318 D~C~~--p~s 325 (703)
T KOG2321|consen 318 DFCFV--PGS 325 (703)
T ss_pred ceeee--cCC
Confidence 99996 554
No 300
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=70.40 E-value=15 Score=43.20 Aligned_cols=14 Identities=21% Similarity=0.173 Sum_probs=6.4
Q ss_pred cCCCCCCCCCCCCC
Q 001070 23 FPPYPPPSSSAAGD 36 (1165)
Q Consensus 23 ~~~~~~~~~~~~~~ 36 (1165)
-||-|+-+++-+|+
T Consensus 224 ~~P~P~m~~P~s~P 237 (498)
T KOG4849|consen 224 VRPTPLMSQPTSLP 237 (498)
T ss_pred CCCCCCCCCCCCCC
Confidence 34444444444443
No 301
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=70.14 E-value=17 Score=44.86 Aligned_cols=61 Identities=20% Similarity=0.196 Sum_probs=43.8
Q ss_pred EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccC
Q 001070 188 IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKS 267 (1165)
Q Consensus 188 VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~ 267 (1165)
|-.|+...+.-...|..- -..|.|++.+ || ++.|++ ..|+||+|++.+. +-++||++++
T Consensus 126 v~~~~~~~~~~~~~~~~~-~~~~~sl~is--~D---~~~l~~---as~~ik~~~~~~k------------evv~~ftgh~ 184 (541)
T KOG4547|consen 126 VVYILEKEKVIIRIWKEQ-KPLVSSLCIS--PD---GKILLT---ASRQIKVLDIETK------------EVVITFTGHG 184 (541)
T ss_pred EEEEecccceeeeeeccC-CCccceEEEc--CC---CCEEEe---ccceEEEEEccCc------------eEEEEecCCC
Confidence 667777766666677632 2488889884 55 455776 4599999999665 8889999877
Q ss_pred CC
Q 001070 268 SA 269 (1165)
Q Consensus 268 s~ 269 (1165)
+.
T Consensus 185 s~ 186 (541)
T KOG4547|consen 185 SP 186 (541)
T ss_pred cc
Confidence 65
No 302
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=69.86 E-value=1.5e+02 Score=32.57 Aligned_cols=101 Identities=18% Similarity=0.217 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001070 744 MQDMLNQLMTMQKELQKQMSNLVTLPVTKEGRRLEASLGRGIEKAVKASTDALWARFHEENARNEKLLRDRTQQITGLIT 823 (1165)
Q Consensus 744 mq~~l~ql~~~qke~qkqm~~~v~~plsKE~kklE~~L~~~ieK~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS 823 (1165)
+++-+.+|.+.||++.|-|+. +.+|-.++|..=..-... +..|..+-..-..+......+|...|+++---++
T Consensus 36 ~~~d~~~L~~~Q~~L~~e~~~-----l~~eqQ~l~~er~~l~~e--r~~~~~~~~e~~~~~e~~r~~fekekqq~~~~~t 108 (228)
T PRK06800 36 IQKDHEELLAQQKSLHKELNQ-----LRQEQQKLERERQQLLAD--REQFQEHVQQQMKEIEAARQQFQKEQQETAYEWT 108 (228)
T ss_pred hhhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788999999999999987 566777776331111110 1122222111111122223455566677777778
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HhhhhhHh
Q 001070 824 NLINKDLTASLEKLVKKELA----AVGPAIVR 851 (1165)
Q Consensus 824 ~~LnktL~~nLEk~LKkeV~----sVvPAI~~ 851 (1165)
.+|=..-=..-|+.|..-|. .|+|-+..
T Consensus 109 ~~LwdeSi~LAEkIV~QaiDtR~l~vlPiLt~ 140 (228)
T PRK06800 109 ELLWDQSFQLAEKIVNQAVDTRLLDVLPILTG 140 (228)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 77766666777888777766 56665544
No 303
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=69.63 E-value=1.8e+02 Score=33.17 Aligned_cols=17 Identities=12% Similarity=0.429 Sum_probs=7.5
Q ss_pred HHHHHHHhHHHHHHHHH
Q 001070 785 IEKAVKASTDALWARFH 801 (1165)
Q Consensus 785 ieK~lk~eld~L~~R~d 801 (1165)
+.+.+...++.+..++.
T Consensus 184 l~~~i~~~l~~~l~~l~ 200 (367)
T PF04286_consen 184 LAEKIQDELDSLLEKLQ 200 (367)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 304
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=69.62 E-value=11 Score=42.95 Aligned_cols=51 Identities=22% Similarity=0.552 Sum_probs=40.1
Q ss_pred EEEeecCCC-ceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccC
Q 001070 188 IKIWEDSKV-APLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASAS 244 (1165)
Q Consensus 188 VriWD~~~g-~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~ 244 (1165)
|-+||.+.+ .|+..+.-|. ..+.-|.| .|..|++ |+| .+.|.+|-.||..+
T Consensus 204 ~~l~d~rn~~~p~S~l~ahk-~~i~eV~F--Hpk~p~~--Lft-~sedGslw~wdas~ 255 (319)
T KOG4714|consen 204 VGLWDARNVAMPVSLLKAHK-AEIWEVHF--HPKNPEH--LFT-CSEDGSLWHWDAST 255 (319)
T ss_pred EEEEEcccccchHHHHHHhh-hhhhheec--cCCCchh--eeE-ecCCCcEEEEcCCC
Confidence 888998875 5788888774 48899999 6777774 565 67999999999753
No 305
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=69.45 E-value=40 Score=38.06 Aligned_cols=143 Identities=22% Similarity=0.340 Sum_probs=77.7
Q ss_pred ceEEecccCCCCCCCCCCcccccccccCCCcccccccEeeecCceEEEeec-C--CcEEEEeCcchhhHhhcCCccEEEe
Q 001070 115 YVAYDVDAVEEGREPTQQLEVNPITKYGSDPELLIGRQIAVNKHYVCYGLK-G--GNVRVLNLNTATRSLLRGHTKIKIW 191 (1165)
Q Consensus 115 ~~~~dVd~~~~ge~~~pqlev~pIt~Y~sd~~~~~GR~IAVn~~yIayG~k-d--g~IRVwdi~t~ir~llrGH~qVriW 191 (1165)
.++||++++. ++|++.. +| .|+-|-.+--||+.|.+|.. + +.||+++..+ ..+. - =|
T Consensus 48 s~~yD~~tn~----------~rpl~v~-td-~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~-----~~~~--~-~w 107 (243)
T PF07250_consen 48 SVEYDPNTNT----------FRPLTVQ-TD-TFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCT-----SDGT--C-DW 107 (243)
T ss_pred EEEEecCCCc----------EEeccCC-CC-CcccCcCCCCCCCEEEeCCCCccccceEEEecCC-----CCCC--C-Cc
Confidence 5678887732 3455543 33 37777777778888888654 2 3456655543 0000 0 12
Q ss_pred ecCC-CceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCC
Q 001070 192 EDSK-VAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAK 270 (1165)
Q Consensus 192 D~~~-g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~ 270 (1165)
.... ..-. +.|=-++.=| +|++++|.||..+-+.-+|.-.... .. ..++.|-....
T Consensus 108 ~e~~~~m~~-------~RWYpT~~~L-----~DG~vlIvGG~~~~t~E~~P~~~~~--------~~---~~~~~~l~~~~ 164 (243)
T PF07250_consen 108 TESPNDMQS-------GRWYPTATTL-----PDGRVLIVGGSNNPTYEFWPPKGPG--------PG---PVTLPFLSQTS 164 (243)
T ss_pred eECcccccC-------CCccccceEC-----CCCCEEEEeCcCCCcccccCCccCC--------CC---ceeeecchhhh
Confidence 1111 1112 2333344444 5667899999997776666542110 00 11222211111
Q ss_pred CccccccEEEEEeecCCcEEEEeccCCCcEE
Q 001070 271 PRVEEAFFNQVVVLSQAGLLLFANAKKNAIY 301 (1165)
Q Consensus 271 ~~~~~aff~sV~~~p~a~~ilLan~~r~aIY 301 (1165)
.....-+|--+-+.|+|++++.||. +..||
T Consensus 165 ~~~~~nlYP~~~llPdG~lFi~an~-~s~i~ 194 (243)
T PF07250_consen 165 DTLPNNLYPFVHLLPDGNLFIFANR-GSIIY 194 (243)
T ss_pred ccCccccCceEEEcCCCCEEEEEcC-CcEEE
Confidence 0123567888899999999999985 45555
No 306
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=68.77 E-value=12 Score=47.77 Aligned_cols=21 Identities=14% Similarity=0.029 Sum_probs=8.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 001070 51 EPHANMHPHPYPHGPHRLLPY 71 (1165)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~ 71 (1165)
|||+-.+.++...-|.+.+|+
T Consensus 621 PpP~~~Pg~np~~pPpg~~pP 641 (894)
T KOG0132|consen 621 PPPPLRPGYNPYPPPPGFMPP 641 (894)
T ss_pred CCCCCCCCCCCCCCCcccCCC
Confidence 333333333333334444433
No 307
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=68.30 E-value=24 Score=41.66 Aligned_cols=138 Identities=15% Similarity=0.238 Sum_probs=79.2
Q ss_pred ceEEEeecCCcEEEEeCcc-hhh----HhhcCCcc---------------------------------EEEeec-CCCce
Q 001070 158 HYVCYGLKGGNVRVLNLNT-ATR----SLLRGHTK---------------------------------IKIWED-SKVAP 198 (1165)
Q Consensus 158 ~yIayG~kdg~IRVwdi~t-~ir----~llrGH~q---------------------------------VriWD~-~~g~p 198 (1165)
..++|.+.-|.||+.|+.. ++| .||.--++ |+|||. ....|
T Consensus 227 n~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~p 306 (433)
T KOG1354|consen 227 NVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKP 306 (433)
T ss_pred cEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCc
Confidence 4577999999999999974 333 35544444 999999 56788
Q ss_pred eEEecCCCC-----------CCcc---eeEeecCCCCCCceEEEeecCCCceEEEeEccCcC--CCCCCCCCCC--cceE
Q 001070 199 LIILKPHGG-----------QPVN---SAQYLTAPNQAGHIILVTAGPLNREVKLWASASEE--GWSLPTHAES--WKCT 260 (1165)
Q Consensus 199 l~~lephdG-----------~sV~---SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~--~~~~~~~~~~--w~C~ 260 (1165)
++++.-|+- ++|+ ..+|. | +..+.. +|+-+.-.++++++-+. -+.++...+. .+-+
T Consensus 307 v~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s----g-~~~~v~-TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~ 380 (433)
T KOG1354|consen 307 VETYPVHEYLRSKLCSLYENDAIFDKFECSWS----G-NDSYVM-TGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV 380 (433)
T ss_pred ceEEeehHhHHHHHHHHhhccchhheeEEEEc----C-CcceEe-cccccceEEEecCCCCcceeecccccccCCccccc
Confidence 988888842 3443 34552 3 334345 58899999999965542 2222222221 2222
Q ss_pred EEEeccCCCCCc----------cccccEEEEEeecCCcEEEEeccCCCcEEEE
Q 001070 261 QTLDLKSSAKPR----------VEEAFFNQVVVLSQAGLLLFANAKKNAIYSV 303 (1165)
Q Consensus 261 QTLe~~~s~~~~----------~~~aff~sV~~~p~a~~ilLan~~r~aIYal 303 (1165)
..++..++...+ .-..-.++.+-+|.-+.|-+|. -|.+|.+
T Consensus 381 ~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aa--tnnlyif 431 (433)
T KOG1354|consen 381 LKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVAA--TNNLYIF 431 (433)
T ss_pred ccceeeecCCCccccccccchhhhhhHHHhhccCCccceeeeee--cCceEEe
Confidence 233322211000 1112345667788888776654 4566654
No 308
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=67.35 E-value=23 Score=43.15 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=39.0
Q ss_pred cCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEE--EeecCCcEEEEeccCCCcEEEEEee
Q 001070 231 GPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQV--VVLSQAGLLLFANAKKNAIYSVHLG 306 (1165)
Q Consensus 231 GslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV--~~~p~a~~ilLan~~r~aIYalhl~ 306 (1165)
|...++|-+||+... +-+|||.+.. +....+.| +++|++.+=++..+-...|+-+|-.
T Consensus 218 ~~yG~~l~vWD~~~r------------~~~Q~idLg~------~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~ 277 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTR------------KLLQTIDLGE------EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKD 277 (461)
T ss_dssp H-S--EEEEEETTTT------------EEEEEEES-T------TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-
T ss_pred ccccCeEEEEECCCC------------cEeeEEecCC------CCCceEEEEecCCCCccceEEEEeccceEEEEEEc
Confidence 447899999998665 8999999832 12355566 7999999999999999999999884
No 309
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=65.10 E-value=71 Score=39.55 Aligned_cols=121 Identities=21% Similarity=0.273 Sum_probs=77.7
Q ss_pred CceeecC-CceEEe-cccCCCCCCCCCCcccccccccCCCcccccccEeeecCceEEE-----eecCCcEEEEeCcc--h
Q 001070 107 YGKRVFG-DYVAYD-VDAVEEGREPTQQLEVNPITKYGSDPELLIGRQIAVNKHYVCY-----GLKGGNVRVLNLNT--A 177 (1165)
Q Consensus 107 ~Gr~l~g-~~~~~d-Vd~~~~ge~~~pqlev~pIt~Y~sd~~~~~GR~IAVn~~yIay-----G~kdg~IRVwdi~t--~ 177 (1165)
++-||.| +-.+|+ -+.-.+++.. .|.+.-|+.|.+-|.- |+.-||| +-+++++|||.|-. .
T Consensus 145 y~ARvv~~sl~i~e~t~n~~~~p~~--~lr~~gi~dFsisP~~--------n~~~la~~tPEk~~kpa~~~i~sIp~~s~ 214 (561)
T COG5354 145 YVARVVGSSLYIHEITDNIEEHPFK--NLRPVGILDFSISPEG--------NHDELAYWTPEKLNKPAMVRILSIPKNSV 214 (561)
T ss_pred hhhhhccCeEEEEecCCccccCchh--hccccceeeEEecCCC--------CCceEEEEccccCCCCcEEEEEEccCCCe
Confidence 5666755 556677 3444455553 7888888899888843 6667888 66789999999973 2
Q ss_pred h--hHhhcCCcc------------------------------EEEeecCC-CceeEEecCCCCCCcceeEeecCCCCCCc
Q 001070 178 T--RSLLRGHTK------------------------------IKIWEDSK-VAPLIILKPHGGQPVNSAQYLTAPNQAGH 224 (1165)
Q Consensus 178 i--r~llrGH~q------------------------------VriWD~~~-g~pl~~lephdG~sV~SVaFl~aP~~~d~ 224 (1165)
+ +.||+--.. .+|.+++. .+||+.. - -.+|.+++| .|.+.
T Consensus 215 l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~-~--~~pVhdf~W--~p~S~-- 287 (561)
T COG5354 215 LVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKD-L--KDPVHDFTW--EPLSS-- 287 (561)
T ss_pred eeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceecc-c--cccceeeee--cccCC--
Confidence 2 223322211 33444442 2344431 1 138999999 56653
Q ss_pred eEEEeecCCCceEEEeEccC
Q 001070 225 IILVTAGPLNREVKLWASAS 244 (1165)
Q Consensus 225 ~~lvtsGslnrtIKLW~~a~ 244 (1165)
+|.|.+|.....+-++|+.+
T Consensus 288 ~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 288 RFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred ceeEEecccccceeeccccc
Confidence 57888999999999999844
No 310
>PRK04043 tolB translocation protein TolB; Provisional
Probab=65.04 E-value=74 Score=38.26 Aligned_cols=98 Identities=10% Similarity=0.087 Sum_probs=51.2
Q ss_pred CccEEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEe
Q 001070 185 HTKIKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLD 264 (1165)
Q Consensus 185 H~qVriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe 264 (1165)
+.+|.++|..+|..-.... ..| .+.+..| +|||.. ..+..+-..+..|-+++++++ ...+ |.
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~-~~g-~~~~~~~--SPDG~~-la~~~~~~g~~~Iy~~dl~~g------------~~~~-LT 273 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIAS-SQG-MLVVSDV--SKDGSK-LLLTMAPKGQPDIYLYDTNTK------------TLTQ-IT 273 (419)
T ss_pred CCEEEEEECCCCcEEEEec-CCC-cEEeeEE--CCCCCE-EEEEEccCCCcEEEEEECCCC------------cEEE-cc
Confidence 3348888888776433332 223 3455678 576644 212222233456666676443 2222 22
Q ss_pred ccCCCCCccccccEEEEEeecCCcEE-EEeccC-CCcEEEEEeecC
Q 001070 265 LKSSAKPRVEEAFFNQVVVLSQAGLL-LFANAK-KNAIYSVHLGYG 308 (1165)
Q Consensus 265 ~~~s~~~~~~~aff~sV~~~p~a~~i-lLan~~-r~aIYalhl~~g 308 (1165)
.. ......-..+||+++| +++|.. ...||.+.++-|
T Consensus 274 ~~--------~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 274 NY--------PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred cC--------CCccCccEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 10 1111123578999754 555543 348999999743
No 311
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=64.86 E-value=15 Score=43.10 Aligned_cols=13 Identities=38% Similarity=0.325 Sum_probs=8.4
Q ss_pred cccCCCCCCCccc
Q 001070 4 QSQSQSPNQNQKQ 16 (1165)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (1165)
|.-+-.+|-||.+
T Consensus 232 ~P~s~P~N~~~~P 244 (498)
T KOG4849|consen 232 QPTSLPSNLNQAP 244 (498)
T ss_pred CCCCCCCCcCcCc
Confidence 4455667777765
No 312
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=64.83 E-value=2.4e+02 Score=31.58 Aligned_cols=37 Identities=14% Similarity=0.201 Sum_probs=31.0
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001070 788 AVKASTDALWARFHEENARNEKLLRDRTQQITGLITN 824 (1165)
Q Consensus 788 ~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~ 824 (1165)
.|..-|..+|..|+.+.+.|...+..|...|-..|..
T Consensus 9 ~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~ 45 (247)
T PF06705_consen 9 SINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQK 45 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3555677799999999999999999999988887766
No 313
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=64.43 E-value=27 Score=35.24 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=35.7
Q ss_pred EeeecCceEEEeecCCcEEEEeCcchhhHhhcCCccEEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEe
Q 001070 152 QIAVNKHYVCYGLKGGNVRVLNLNTATRSLLRGHTKIKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVT 229 (1165)
Q Consensus 152 ~IAVn~~yIayG~kdg~IRVwdi~t~ir~llrGH~qVriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvt 229 (1165)
+..+.+.+.+||+++|+|.|+|.. .|+|-+.+ .+.|.+++++|-. +-+-.-||+
T Consensus 48 L~~~~~~~F~Y~l~NGTVGvY~~~------------~RlWRiKS-----------K~~~~~~~~~D~~-gdG~~eLI~ 101 (111)
T PF14783_consen 48 LCSLGGGRFAYALANGTVGVYDRS------------QRLWRIKS-----------KNQVTSMAFYDIN-GDGVPELIV 101 (111)
T ss_pred EEEcCCCEEEEEecCCEEEEEeCc------------ceeeeecc-----------CCCeEEEEEEcCC-CCCceEEEE
Confidence 344555667899999999999873 68888764 2457778877532 222233665
No 314
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=63.92 E-value=93 Score=31.86 Aligned_cols=79 Identities=18% Similarity=0.195 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHhHHH
Q 001070 737 AFSQVIAMQDMLNQLMTMQKELQKQMSNLVTLPVTKEGRRLEASLGR-------GIEKAVKASTDALWARFHEENARNEK 809 (1165)
Q Consensus 737 ~~~q~~~mq~~l~ql~~~qke~qkqm~~~v~~plsKE~kklE~~L~~-------~ieK~lk~eld~L~~R~dEerr~rEa 809 (1165)
+|-..-+.++...+|=...+++++++.. ..+|++++...|.. .--+...+++..+.+.++...+..++
T Consensus 27 v~~~~~~~k~~~~~l~~~~~~~~~~l~~-----~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~ 101 (158)
T PF03938_consen 27 VFQESPAGKDAQAKLQEKFKALQKELQA-----KQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQ 101 (158)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444455555555554 23444444443333 22334445555555555555555555
Q ss_pred HHHHHHHHHHH
Q 001070 810 LLRDRTQQITG 820 (1165)
Q Consensus 810 a~~~RQ~qLL~ 820 (1165)
....+.+.++.
T Consensus 102 ~l~~~~~~~~~ 112 (158)
T PF03938_consen 102 QLQQEEQELLQ 112 (158)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 315
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=63.54 E-value=1.1e+02 Score=34.67 Aligned_cols=152 Identities=14% Similarity=0.148 Sum_probs=0.0
Q ss_pred cCceEEEeec----------CCcEEEEeCcchhhHhhcCCccEEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCce
Q 001070 156 NKHYVCYGLK----------GGNVRVLNLNTATRSLLRGHTKIKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHI 225 (1165)
Q Consensus 156 n~~yIayG~k----------dg~IRVwdi~t~ir~llrGH~qVriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~ 225 (1165)
+..||+-|.. .|.|.|+++... +++..|+. +.--...+| +||+++- -.++
T Consensus 41 ~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~------~~~~~~l~-------~i~~~~~~g-~V~ai~~------~~~~ 100 (321)
T PF03178_consen 41 KKEYIVVGTAFNYGEDPEPSSGRILVFEISES------PENNFKLK-------LIHSTEVKG-PVTAICS------FNGR 100 (321)
T ss_dssp SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----------EEE-------EEEEEEESS--EEEEEE------ETTE
T ss_pred ccCEEEEEecccccccccccCcEEEEEEEEcc------cccceEEE-------EEEEEeecC-cceEhhh------hCCE
Q ss_pred EEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEe
Q 001070 226 ILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHL 305 (1165)
Q Consensus 226 ~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl 305 (1165)
++++.| ++|.+|++... +.+....+ .+.-+.-+.+...+.+|+++|+. ..|+.+.+
T Consensus 101 lv~~~g---~~l~v~~l~~~------------~~l~~~~~--------~~~~~~i~sl~~~~~~I~vgD~~-~sv~~~~~ 156 (321)
T PF03178_consen 101 LVVAVG---NKLYVYDLDNS------------KTLLKKAF--------YDSPFYITSLSVFKNYILVGDAM-KSVSLLRY 156 (321)
T ss_dssp EEEEET---TEEEEEEEETT------------SSEEEEEE--------E-BSSSEEEEEEETTEEEEEESS-SSEEEEEE
T ss_pred EEEeec---CEEEEEEccCc------------ccchhhhe--------ecceEEEEEEeccccEEEEEEcc-cCEEEEEE
Q ss_pred ecCCCccccccccccccccccceeeeeec-cCC-----CCcceEEEEEeehhhhhh
Q 001070 306 GYGNNSAATRIDYIAEFTVTMPVLSFTGT-IDP-----PSEHIIKLYCVQTQAIQQ 355 (1165)
Q Consensus 306 ~~g~~~~~~r~dyiaeF~v~~PILSft~~-~d~-----~ge~~vq~yCvQtqAIQq 355 (1165)
..... +|.-+++=.-...+.+.... ++. |-.+.+.+|+....+...
T Consensus 157 ~~~~~----~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~ 208 (321)
T PF03178_consen 157 DEENN----KLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNS 208 (321)
T ss_dssp ETTTE-----EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SST
T ss_pred EccCC----EEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCccc
No 316
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=63.08 E-value=15 Score=44.88 Aligned_cols=99 Identities=17% Similarity=0.246 Sum_probs=49.8
Q ss_pred ccEeee---cCceEEEeecCCcEEEEeCcc------hhhHhhcCCcc-EEEeecCCCceeEEecCC--CCCCcceeEeec
Q 001070 150 GRQIAV---NKHYVCYGLKGGNVRVLNLNT------ATRSLLRGHTK-IKIWEDSKVAPLIILKPH--GGQPVNSAQYLT 217 (1165)
Q Consensus 150 GR~IAV---n~~yIayG~kdg~IRVwdi~t------~ir~llrGH~q-VriWD~~~g~pl~~leph--dG~sV~SVaFl~ 217 (1165)
.+..+| ++..++.++.||.|-.+.+.. .....+.++.. .+. .....+.. .+.- +...+.+++...
T Consensus 148 ~~~~~~~~~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~--l~g~~~~~-~~~~~~~~~~~~~~~~~~ 224 (547)
T PF11715_consen 148 HRLAAVTHDSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRS--LSGLFPWS-YRGDNSSSSVAASLAVSS 224 (547)
T ss_dssp EEEEEE---SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHC--CTTTS-TT----SSSS---EEEEEE--
T ss_pred CeEEEEEecCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhh--hhCcCCcc-cccCCCCCCccceEEEec
Confidence 456788 999999999999998888775 12222222221 000 00111111 0000 011233333310
Q ss_pred -CCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEecc
Q 001070 218 -APNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLK 266 (1165)
Q Consensus 218 -aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~ 266 (1165)
.-++.+ +|+ +-+.|++||||++.++ .|+.|+...
T Consensus 225 ~~~~~~~--~l~-tl~~D~~LRiW~l~t~------------~~~~~~~~~ 259 (547)
T PF11715_consen 225 SEINDDT--FLF-TLSRDHTLRIWSLETG------------QCLATIDLL 259 (547)
T ss_dssp ---ETTT--EEE-EEETTSEEEEEETTTT------------CEEEEEETT
T ss_pred ceeCCCC--EEE-EEeCCCeEEEEECCCC------------eEEEEeccc
Confidence 112333 344 4779999999999665 999998874
No 317
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=62.74 E-value=14 Score=46.55 Aligned_cols=74 Identities=14% Similarity=0.196 Sum_probs=53.0
Q ss_pred EEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEE
Q 001070 200 IILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFN 279 (1165)
Q Consensus 200 ~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~ 279 (1165)
.+|+-..-|+||.||| .|||.. ||.+ .+..+-|+|...| .-+|||. +|+|.++
T Consensus 5 ~~~r~~~~hci~d~af--kPDGsq---L~lA--Ag~rlliyD~ndG------------~llqtLK--------gHKDtVy 57 (1081)
T KOG1538|consen 5 LTWRDKAEHCINDIAF--KPDGTQ---LILA--AGSRLLVYDTSDG------------TLLQPLK--------GHKDTVY 57 (1081)
T ss_pred hhhhcccccchheeEE--CCCCce---EEEe--cCCEEEEEeCCCc------------ccccccc--------cccceEE
Confidence 4455444579999999 788876 4432 2356778886444 6788998 5999999
Q ss_pred EEEeecCCcEEEEeccCCCcE
Q 001070 280 QVVVLSQAGLLLFANAKKNAI 300 (1165)
Q Consensus 280 sV~~~p~a~~ilLan~~r~aI 300 (1165)
-|+++-+|...--..+.|-.|
T Consensus 58 cVAys~dGkrFASG~aDK~VI 78 (1081)
T KOG1538|consen 58 CVAYAKDGKRFASGSADKSVI 78 (1081)
T ss_pred EEEEccCCceeccCCCceeEE
Confidence 999999988765555555544
No 318
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=62.14 E-value=4.9 Score=52.60 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=8.9
Q ss_pred cccccccCCCccccccc
Q 001070 135 VNPITKYGSDPELLIGR 151 (1165)
Q Consensus 135 v~pIt~Y~sd~~~~~GR 151 (1165)
++|-.+|..|-..++|.
T Consensus 98 dm~s~~~~~Dkrs~lga 114 (2365)
T COG5178 98 DMPSVLTKVDKRSYLGA 114 (2365)
T ss_pred cchhhhhhhhhHhhhhh
Confidence 34455555555555554
No 319
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=61.19 E-value=5.4e+02 Score=34.52 Aligned_cols=217 Identities=16% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHHHHH--------------------HHHHHhHHHHHHH
Q 001070 740 QVIAMQDMLNQLMTMQKELQKQMSNLVTLPVTKEGRRLEASLGRGIE--------------------KAVKASTDALWAR 799 (1165)
Q Consensus 740 q~~~mq~~l~ql~~~qke~qkqm~~~v~~plsKE~kklE~~L~~~ie--------------------K~lk~eld~L~~R 799 (1165)
|+...||.=.++|..|-++||++.. +---.||.....++...+|. .++.-++..+..|
T Consensus 263 qleqlqEfkSkim~qqa~Lqrel~r--aR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr 340 (1243)
T KOG0971|consen 263 QLEQLQEFKSKIMEQQADLQRELKR--ARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKER 340 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHh---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 800 FHEENAR---------------------------------------------NEKLLRDRTQQITGLITNLINKDLTASL 834 (1165)
Q Consensus 800 ~dEerr~---------------------------------------------rEaa~~~RQ~qLL~LVS~~LnktL~~nL 834 (1165)
+||--.. .|+.+..|-.+.+.+-.+.+ +-=..+
T Consensus 341 ~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~--~eL~r~ 418 (1243)
T KOG0971|consen 341 VDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSEL--EELRRQ 418 (1243)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHH--HHHHHH
Q ss_pred HHHHHHHHHHhhhhhHhhhhhhHHHHHHHHH-HHHHhhcchhhhHHHHHHHHHHHhHHHHH--HHHHHhhhhhhhHHHHH
Q 001070 835 EKLVKKELAAVGPAIVRTISPSIEKTITSAI-VESFQRGVGDKAVNQLERSVNSRLEATVG--RQIQAQFQTSGKHALQD 911 (1165)
Q Consensus 835 Ek~LKkeV~sVvPAI~~~t~~avekqlss~l-~eslq~~l~dk~vnqLeK~V~s~Lp~aVa--raIq~~vqtsv~qaIqd 911 (1165)
-..|++++ .+.+.+..-+.+||.+++ .|-|-.-+.|+-.| ||..| +-|+.+|. .++.. |.+
T Consensus 419 kE~Lsr~~-----d~aEs~iadlkEQVDAAlGAE~MV~qLtdknln-lEekV-klLeetv~dlEalee---------~~E 482 (1243)
T KOG0971|consen 419 KERLSREL-----DQAESTIADLKEQVDAALGAEEMVEQLTDKNLN-LEEKV-KLLEETVGDLEALEE---------MNE 482 (1243)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccC-HHHHH-HHHHHHHHHHHHHHH---------HHH
Q ss_pred HHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001070 912 ALKSSVEASVIPAFEKSCKAMFEQVDATFQKGMVEHTTATLQHFESTHSPLALVLRESVNSVSSMAQTLSGEFVDGQRK 990 (1165)
Q Consensus 912 avr~af~stLIPAFE~scq~MFqQV~~~F~rGm~E~~~qlQqq~dSaKtsLv~~L~etIssmaa~q~~LqsEll~lQrQ 990 (1165)
.+.++=+....--.|..= ....++++++++.+++... +-.+.+||--.......|+.++.++..+
T Consensus 483 QL~Esn~ele~DLreEld-------------~~~g~~kel~~r~~aaqet-~yDrdqTI~KfRelva~Lqdqlqe~~dq 547 (1243)
T KOG0971|consen 483 QLQESNRELELDLREELD-------------MAKGARKELQKRVEAAQET-VYDRDQTIKKFRELVAHLQDQLQELTDQ 547 (1243)
T ss_pred HHHHHHHHHHHHHHHHHH-------------HHhhHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHhh
No 320
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.92 E-value=19 Score=43.68 Aligned_cols=9 Identities=22% Similarity=0.294 Sum_probs=3.7
Q ss_pred CCCCCCCCh
Q 001070 77 TTVVSPNAG 85 (1165)
Q Consensus 77 ~~~~~~~~~ 85 (1165)
++++.||++
T Consensus 465 ~~pp~p~~~ 473 (483)
T KOG2236|consen 465 PPPPPPNSP 473 (483)
T ss_pred CCCCCCCCh
Confidence 333344444
No 321
>PRK09752 adhesin; Provisional
Probab=60.63 E-value=9.5 Score=50.78 Aligned_cols=8 Identities=13% Similarity=0.343 Sum_probs=3.7
Q ss_pred CCCChHHH
Q 001070 81 SPNAGPQI 88 (1165)
Q Consensus 81 ~~~~~~~~ 88 (1165)
.|-.|+.|
T Consensus 955 RPEvGsYl 962 (1250)
T PRK09752 955 NAKVGGYL 962 (1250)
T ss_pred ccccchhh
Confidence 34445544
No 322
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=59.12 E-value=3.7 Score=51.18 Aligned_cols=49 Identities=27% Similarity=0.318 Sum_probs=38.5
Q ss_pred EEEeecCCC--ceeEEecCCC--CCCcceeEeecCCCCCCceEEEeecCCCceEEEeEc
Q 001070 188 IKIWEDSKV--APLIILKPHG--GQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWAS 242 (1165)
Q Consensus 188 VriWD~~~g--~pl~~lephd--G~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~ 242 (1165)
++|||..++ .|.+.|.=.. ++.+.||+|+ .+++ ||-+|..-|.|+|.|+
T Consensus 131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwl-----rd~k-lvlaGm~sr~~~ifdl 183 (783)
T KOG1008|consen 131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWL-----RDTK-LVLAGMTSRSVHIFDL 183 (783)
T ss_pred ccceecccccCCCccccccccccccCccccccc-----cCcc-hhhcccccchhhhhhh
Confidence 999999988 6766554332 4578899997 7778 5557999999999997
No 323
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=58.50 E-value=53 Score=43.61 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=61.1
Q ss_pred cCceEEEeec------CCcEEEEeCcchhhHh---hcCCcc----------------------EEEeecCCC----ceeE
Q 001070 156 NKHYVCYGLK------GGNVRVLNLNTATRSL---LRGHTK----------------------IKIWEDSKV----APLI 200 (1165)
Q Consensus 156 n~~yIayG~k------dg~IRVwdi~t~ir~l---lrGH~q----------------------VriWD~~~g----~pl~ 200 (1165)
||+|.|...- -+.|||||+...+.+. ..|-++ |-||+= +| .-.-
T Consensus 220 DG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l 298 (928)
T PF04762_consen 220 DGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTL 298 (928)
T ss_pred CCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEec
Confidence 5666665432 3689999999543332 233333 566642 33 2122
Q ss_pred EecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEE
Q 001070 201 ILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQ 280 (1165)
Q Consensus 201 ~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~s 280 (1165)
+| .+++..|..++| ++++ -+|.. -+...|+||-...- .|-..|.+.|..... +..
T Consensus 299 ~~-~~~~~~v~~l~W--n~ds---~iLAv--~~~~~vqLWt~~NY----------HWYLKqei~~~~~~~-------~~~ 353 (928)
T PF04762_consen 299 RF-DPEEEKVIELAW--NSDS---EILAV--WLEDRVQLWTRSNY----------HWYLKQEIRFSSSES-------VNF 353 (928)
T ss_pred CC-CCCCceeeEEEE--CCCC---CEEEE--EecCCceEEEeeCC----------EEEEEEEEEccCCCC-------CCc
Confidence 23 234568899999 3443 43443 23445999997332 588999999854332 112
Q ss_pred EEeecCCcE
Q 001070 281 VVVLSQAGL 289 (1165)
Q Consensus 281 V~~~p~a~~ 289 (1165)
+.-||...+
T Consensus 354 ~~Wdpe~p~ 362 (928)
T PF04762_consen 354 VKWDPEKPL 362 (928)
T ss_pred eEECCCCCC
Confidence 566676543
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=57.33 E-value=95 Score=41.95 Aligned_cols=100 Identities=22% Similarity=0.298 Sum_probs=52.9
Q ss_pred ccEeeecCceEEEeecCCcEEEEeCcchh-----hHhhcCCcc--------------------EEEeecCCCc---eeEE
Q 001070 150 GRQIAVNKHYVCYGLKGGNVRVLNLNTAT-----RSLLRGHTK--------------------IKIWEDSKVA---PLII 201 (1165)
Q Consensus 150 GR~IAVn~~yIayG~kdg~IRVwdi~t~i-----r~llrGH~q--------------------VriWD~~~g~---pl~~ 201 (1165)
|.-+|| .|.|++..-+.|||||+...+ +...-+|.= |.|++=. |- -+..
T Consensus 207 g~~fAV--s~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l 283 (1265)
T KOG1920|consen 207 GEYFAV--SFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVL 283 (1265)
T ss_pred CcEEEE--EEEeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-Ccccccccc
Confidence 334555 355556656899999999433 323333322 4444321 21 0111
Q ss_pred ecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEec
Q 001070 202 LKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDL 265 (1165)
Q Consensus 202 lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~ 265 (1165)
-.|.|-..|..++|. -+ .+--..+++.-.++.|++|-...= .|--.|-+.|
T Consensus 284 ~~p~de~~ve~L~Wn--s~-sdiLAv~~~~~e~~~v~lwt~~Ny----------hWYLKq~l~~ 334 (1265)
T KOG1920|consen 284 PFPLDEKEVEELAWN--SN-SDILAVVTSNLENSLVQLWTTGNY----------HWYLKQELQF 334 (1265)
T ss_pred CCcccccchheeeec--CC-CCceeeeecccccceEEEEEecCe----------EEEEEEEEec
Confidence 123332358888883 22 232224555667777999997331 3666666666
No 325
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=56.99 E-value=84 Score=37.85 Aligned_cols=125 Identities=16% Similarity=0.228 Sum_probs=74.0
Q ss_pred CceEEEeecCCcEEEEeCcchhhHhhc-----CCcc-------EE------------------EeecCC-CceeEEec-C
Q 001070 157 KHYVCYGLKGGNVRVLNLNTATRSLLR-----GHTK-------IK------------------IWEDSK-VAPLIILK-P 204 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~t~ir~llr-----GH~q-------Vr------------------iWD~~~-g~pl~~le-p 204 (1165)
...|++..+-|-+-||||....|.+++ |--| ++ .||..+ .|||-.+. -
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N 286 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHN 286 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCC
Confidence 344445567788999999986665543 3333 11 345444 34555554 1
Q ss_pred CCC----CCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEe----ccC-------CC
Q 001070 205 HGG----QPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLD----LKS-------SA 269 (1165)
Q Consensus 205 hdG----~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe----~~~-------s~ 269 (1165)
.+| .-+-|.+|. .|. -|.+||-+=-|-||.+ |.+.+.+-.+|.=. .++ -.
T Consensus 287 ~~GY~N~~T~KS~~F~-----~D~--~v~tGSD~~~i~~Wkl--------P~~~ds~G~~~IG~~~~~~~~~~~i~~~~~ 351 (609)
T KOG4227|consen 287 PNGYCNIKTIKSMTFI-----DDY--TVATGSDHWGIHIWKL--------PRANDSYGFTQIGHDEEEMPSEIFIEKELT 351 (609)
T ss_pred CCcceeeeeeeeeeee-----cce--eeeccCcccceEEEec--------CCCccccCccccCcchhhCchhheecceeE
Confidence 123 367788884 231 3668999999999997 32222222111100 000 01
Q ss_pred CCccccccEEEEEeecCCcEEEEeccC
Q 001070 270 KPRVEEAFFNQVVVLSQAGLLLFANAK 296 (1165)
Q Consensus 270 ~~~~~~aff~sV~~~p~a~~ilLan~~ 296 (1165)
..+||..+.|||-++|...+|+-+-..
T Consensus 352 VLrGHRSv~NQVRF~~H~~~l~SSGVE 378 (609)
T KOG4227|consen 352 VLRGHRSVPNQVRFSQHNNLLVSSGVE 378 (609)
T ss_pred EEecccccccceeecCCcceEeccchh
Confidence 346899999999999999888766543
No 326
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=56.12 E-value=3.5e+02 Score=32.55 Aligned_cols=85 Identities=19% Similarity=0.249 Sum_probs=48.6
Q ss_pred HHHHHhhccCcHHHHHHHHHhcCCHHHHHHHhhccCcccccccCCC-CcchhHH---HHHHHHHhhhccc--------Ch
Q 001070 1030 KELSRLVSDRKYEEAFTTALQRSDVSIVSWLCSQVDMHGLLSMVPL-PLSQGVL---LSLLQQLACDINK--------DT 1097 (1165)
Q Consensus 1030 ~eI~qLI~eGqyEEAF~kALqSsDlsLV~~LcsrvDP~~Lfsl~Pl-pLSQgVL---LSLIQQLSsDL~t--------dt 1097 (1165)
.++..++..++|.|+... +..|..|+..+.|.. +.+.+ .|..-+- =.|.+|+-.|+.. +.
T Consensus 122 ~qL~~~~~~r~Y~e~a~~------L~av~~L~~~F~~yk--si~~I~~L~~~i~~l~~~L~~qI~~df~~~f~~~~~~~~ 193 (383)
T PF04100_consen 122 EQLKELAKKRQYKEIASL------LQAVKELLEHFKPYK--SIPQIAELSKRIDQLQNELKEQIFEDFEELFGSQGDESP 193 (383)
T ss_pred HHHHHHHHcCCHHHHHHH------HHHHHHHHHHHHccc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccc
Confidence 357778888888887654 456777777777643 22222 2222111 1245566555432 11
Q ss_pred HHHHHHHHHHHHHcCCCCchhHHhH
Q 001070 1098 ARKLAWLTDVAAAINPADPMIAVHA 1122 (1165)
Q Consensus 1098 ~lKL~WLEeal~aLDpsDP~Irehv 1122 (1165)
.....=|.+|+..+|.-|+..|+.+
T Consensus 194 ~~~~~~l~~aC~vvd~L~~~~r~~l 218 (383)
T PF04100_consen 194 GQSSQQLSDACLVVDALGPDVREEL 218 (383)
T ss_pred cchHhHHHHHHHHHHHcCchHHHHH
Confidence 2245667788888888776665544
No 327
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=55.51 E-value=3.7e+02 Score=30.77 Aligned_cols=7 Identities=43% Similarity=0.928 Sum_probs=3.0
Q ss_pred hhHhhhh
Q 001070 606 VSENREK 612 (1165)
Q Consensus 606 ~~~~~e~ 612 (1165)
+.++|++
T Consensus 35 ip~~r~~ 41 (367)
T PF04286_consen 35 IPKNRER 41 (367)
T ss_pred ccccHHH
Confidence 3444444
No 328
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=55.20 E-value=28 Score=41.04 Aligned_cols=19 Identities=26% Similarity=0.358 Sum_probs=16.7
Q ss_pred CceEEEeecCCcEEEEeCc
Q 001070 157 KHYVCYGLKGGNVRVLNLN 175 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~ 175 (1165)
+.||+-|+.|+.+||+|-=
T Consensus 222 ~qflavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 222 NQFLAVGSYDQMLRVLNHF 240 (447)
T ss_pred cceEEeeccchhhhhhcee
Confidence 7899999999999998853
No 329
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=54.63 E-value=1.1e+02 Score=38.38 Aligned_cols=187 Identities=20% Similarity=0.315 Sum_probs=111.2
Q ss_pred ceee-cCCceEEecccCCCCCCCCCCcccccccccCCCcccccccE---eeecCceE-EEeecCCcEEEEeCc-----c-
Q 001070 108 GKRV-FGDYVAYDVDAVEEGREPTQQLEVNPITKYGSDPELLIGRQ---IAVNKHYV-CYGLKGGNVRVLNLN-----T- 176 (1165)
Q Consensus 108 Gr~l-~g~~~~~dVd~~~~ge~~~pqlev~pIt~Y~sd~~~~~GR~---IAVn~~yI-ayG~kdg~IRVwdi~-----t- 176 (1165)
+-|| .++-..||.+. -.|... .|-+.=|+.|.=-| |-+ +|| |+ -.+..-+.+|||-.- .
T Consensus 140 ~arlv~nev~f~~~~~-f~~~~~--kl~~~~i~~f~lSp----gp~~~~vAv---yvPe~kGaPa~vri~~~~~~~~~~~ 209 (566)
T KOG2315|consen 140 AARLVSNEVQFYDLGS-FKTIQH--KLSVSGITMLSLSP----GPEPPFVAV---YVPEKKGAPASVRIYKYPEEGQHQP 209 (566)
T ss_pred hhhhhcceEEEEecCC-ccceee--eeeccceeeEEecC----CCCCceEEE---EccCCCCCCcEEEEeccccccccch
Confidence 4455 77778888877 444443 67777777776555 422 554 00 013334789999776 2
Q ss_pred -hhhHhhcCCccEEEee-------------cCC-Cc--------eeEEecCCC------CC-CcceeEeecCCCCCCceE
Q 001070 177 -ATRSLLRGHTKIKIWE-------------DSK-VA--------PLIILKPHG------GQ-PVNSAQYLTAPNQAGHII 226 (1165)
Q Consensus 177 -~ir~llrGH~qVriWD-------------~~~-g~--------pl~~lephd------G~-sV~SVaFl~aP~~~d~~~ 226 (1165)
+.|+.|+.-.-..-|. +.+ +. .+-..++|+ ++ +||+|.| .|++.. |
T Consensus 210 ~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W--~~s~~E--F 285 (566)
T KOG2315|consen 210 VANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTW--SPSGRE--F 285 (566)
T ss_pred hhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEE--CCCCCE--E
Confidence 5566665544444453 222 11 122222332 22 9999999 576654 7
Q ss_pred EEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccC--CCcEEEEE
Q 001070 227 LVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAK--KNAIYSVH 304 (1165)
Q Consensus 227 lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~--r~aIYalh 304 (1165)
.|+-|-.=-++-|+|+ +|.--++|.--.. ...|| +|.+++||||--- +-.|=+.|
T Consensus 286 ~VvyGfMPAkvtifnl---------------r~~~v~df~egpR---N~~~f-----np~g~ii~lAGFGNL~G~mEvwD 342 (566)
T KOG2315|consen 286 AVVYGFMPAKVTIFNL---------------RGKPVFDFPEGPR---NTAFF-----NPHGNIILLAGFGNLPGDMEVWD 342 (566)
T ss_pred EEEEecccceEEEEcC---------------CCCEeEeCCCCCc---cceEE-----CCCCCEEEEeecCCCCCceEEEe
Confidence 8888999999999998 8888888843221 23454 7999999998433 23444444
Q ss_pred eecCCCccccccccccccccccceeeeeeccCCCCcce
Q 001070 305 LGYGNNSAATRIDYIAEFTVTMPVLSFTGTIDPPSEHI 342 (1165)
Q Consensus 305 l~~g~~~~~~r~dyiaeF~v~~PILSft~~~d~~ge~~ 342 (1165)
+.. +.-|+.|.++---+ -.+-||||..
T Consensus 343 v~n--------~K~i~~~~a~~tt~---~eW~PdGe~f 369 (566)
T KOG2315|consen 343 VPN--------RKLIAKFKAANTTV---FEWSPDGEYF 369 (566)
T ss_pred ccc--------hhhccccccCCceE---EEEcCCCcEE
Confidence 442 44556665543222 1345577764
No 330
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=54.52 E-value=1.4e+02 Score=31.81 Aligned_cols=85 Identities=21% Similarity=0.343 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 753 TMQKELQKQMSNLVTLPVTKEGRRLEASLGRGIEKAVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTA 832 (1165)
Q Consensus 753 ~~qke~qkqm~~~v~~plsKE~kklE~~L~~~ieK~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~ 832 (1165)
..++++++++..++..|-..|+. ++|+...|.+...|++-...-+.+..+.-..+-.++.+ +..
T Consensus 7 e~~~~~~~~~~~~~~~~~~~Ev~-----------~aik~~sd~~~~~l~~~~~~l~eeik~~n~~~~e~l~~-----~~~ 70 (155)
T PF07464_consen 7 EFQKEFQEQVNKLLGSQNQQEVV-----------KAIKEQSDSVAQQLQNVSSSLQEEIKDANPEAEEALKQ-----LKT 70 (155)
T ss_dssp HHHHHHHHHHHHHTSS--SS-SS-----------HHHHHHHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHH-----------HHHHHhHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHH-----HHH
Confidence 45788888888888777666654 45667777777777776666666666544334333333 444
Q ss_pred HHHHHHHHHHHHhhhhhHhhhh
Q 001070 833 SLEKLVKKELAAVGPAIVRTIS 854 (1165)
Q Consensus 833 nLEk~LKkeV~sVvPAI~~~t~ 854 (1165)
.|+++..+ |..--|.+...+.
T Consensus 71 kl~et~~~-L~k~~Pev~~qa~ 91 (155)
T PF07464_consen 71 KLEETAEK-LRKANPEVEKQAN 91 (155)
T ss_dssp HHHHHHHG-GGG-SHHHHHT-S
T ss_pred HHHHHHHH-HHhcChHHHHHHH
Confidence 45544422 2222455554443
No 331
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=54.27 E-value=4.4e+02 Score=32.03 Aligned_cols=91 Identities=13% Similarity=0.168 Sum_probs=58.5
Q ss_pred CcceeEeecCCCCCCceEEEeecCCCceEEEeEccC-cCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCC
Q 001070 209 PVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASAS-EEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQA 287 (1165)
Q Consensus 209 sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~-~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a 287 (1165)
.+|-+|+..+|.... .++++++. +.++..|.+.. +.|+ -..+-+++|.+.+..| -+++|.+.
T Consensus 157 e~yGlcly~~~~~g~-~ya~v~~k-~G~~~Qy~L~~~~~g~------v~~~lVR~f~~~sQ~E---------GCVVDDe~ 219 (381)
T PF02333_consen 157 EPYGLCLYRSPSTGA-LYAFVNGK-DGRVEQYELTDDGDGK------VSATLVREFKVGSQPE---------GCVVDDET 219 (381)
T ss_dssp SEEEEEEEE-TTT---EEEEEEET-TSEEEEEEEEE-TTSS------EEEEEEEEEE-SS-EE---------EEEEETTT
T ss_pred cceeeEEeecCCCCc-EEEEEecC-CceEEEEEEEeCCCCc------EeeEEEEEecCCCcce---------EEEEeccc
Confidence 589999987765433 34555554 46799999853 3232 2357789998855333 67899999
Q ss_pred cEEEEeccCCCcEEEEEeecCCCccccccc
Q 001070 288 GLLLFANAKKNAIYSVHLGYGNNSAATRID 317 (1165)
Q Consensus 288 ~~ilLan~~r~aIYalhl~~g~~~~~~r~d 317 (1165)
++|.++.-. ..|+.+..+.......+.++
T Consensus 220 g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~ 248 (381)
T PF02333_consen 220 GRLYVGEED-VGIWRYDAEPEGGNDRTLVA 248 (381)
T ss_dssp TEEEEEETT-TEEEEEESSCCC-S--EEEE
T ss_pred CCEEEecCc-cEEEEEecCCCCCCcceeee
Confidence 999999887 59999887765554333333
No 332
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.65 E-value=53 Score=39.66 Aligned_cols=170 Identities=16% Similarity=0.178 Sum_probs=98.7
Q ss_pred CceeecCCceEEeccc--CCCCCCCCCC---cccccccccCCCcccccccEe---ee---cCceEEEeecCCcEEEEeCc
Q 001070 107 YGKRVFGDYVAYDVDA--VEEGREPTQQ---LEVNPITKYGSDPELLIGRQI---AV---NKHYVCYGLKGGNVRVLNLN 175 (1165)
Q Consensus 107 ~Gr~l~g~~~~~dVd~--~~~ge~~~pq---lev~pIt~Y~sd~~~~~GR~I---AV---n~~yIayG~kdg~IRVwdi~ 175 (1165)
.|.+|.|-...++.++ ++-|.+--|- -.+++-+.--+++..-.|++| |. |.-.|..+..+..|.|.|+.
T Consensus 145 ~gcrli~y~~~~s~lv~sQks~qa~lpGvGv~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dle 224 (463)
T KOG1645|consen 145 AGCRLIGYDESSSTLVVSQKSGQALLPGVGVQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLE 224 (463)
T ss_pred CCceEEecccccceeeeeccchhhcCCccceEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecc
Confidence 5888866555555544 3333221010 123333444456655566664 32 23356678889999999999
Q ss_pred c-hhhHhhcCCcc----------------------EEEeecCCC-ceeEEecC-CCCCCcceeEeecCCCC--CCceEEE
Q 001070 176 T-ATRSLLRGHTK----------------------IKIWEDSKV-APLIILKP-HGGQPVNSAQYLTAPNQ--AGHIILV 228 (1165)
Q Consensus 176 t-~ir~llrGH~q----------------------VriWD~~~g-~pl~~lep-hdG~sV~SVaFl~aP~~--~d~~~lv 228 (1165)
| .+-..+.-|.+ |.|+|++.- .|+..+.. -.-++|-+|+.+. |+. +.+-+|+
T Consensus 225 t~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~-~n~~f~~gglLv 303 (463)
T KOG1645|consen 225 TSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQ-PNKIFTSGGLLV 303 (463)
T ss_pred cceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccC-ccccccccceEE
Confidence 8 55556666766 888988752 34444432 1224777777762 221 1122233
Q ss_pred eecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCC
Q 001070 229 TAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKK 297 (1165)
Q Consensus 229 tsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r 297 (1165)
+.+ .-+.-|+... +.+.|.|+-.++- ...|.+..+++..+.+|++-..+
T Consensus 304 -~~l--t~l~f~ei~~--------s~~~~p~vlele~---------pG~cismqy~~~snh~l~tyRs~ 352 (463)
T KOG1645|consen 304 -FAL--TVLQFYEIVF--------SAECLPCVLELEP---------PGICISMQYHGVSNHLLLTYRSN 352 (463)
T ss_pred -eee--hhhhhhhhhc--------cccCCCcccccCC---------CcceeeeeecCccceEEEEecCC
Confidence 222 2244566543 3467899777662 35677889999999998876554
No 333
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.52 E-value=24 Score=41.47 Aligned_cols=7 Identities=0% Similarity=-0.130 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 001070 819 TGLITNL 825 (1165)
Q Consensus 819 L~LVS~~ 825 (1165)
|++=.++
T Consensus 265 L~~niDI 271 (365)
T KOG2391|consen 265 LQKNIDI 271 (365)
T ss_pred HHhhhHH
Confidence 3333333
No 334
>PF06152 Phage_min_cap2: Phage minor capsid protein 2; InterPro: IPR009319 This entry is represented by Bacteriophage A118, Gp4, the minor capsid protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=53.10 E-value=4.7e+02 Score=31.29 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=17.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHH
Q 001070 769 PVTKEGRRLEASLGRGIEKAVKA 791 (1165)
Q Consensus 769 plsKE~kklE~~L~~~ieK~lk~ 791 (1165)
++..-...||..|-..|-+.|++
T Consensus 14 ~i~~ly~~lE~~i~~~i~rri~~ 36 (361)
T PF06152_consen 14 QIVDLYQELEQEIIADIIRRIKK 36 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555667888888888888887
No 335
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=52.97 E-value=11 Score=45.94 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=20.8
Q ss_pred cCCcEEEEecc-CCCcEEEEEeecCCC
Q 001070 285 SQAGLLLFANA-KKNAIYSVHLGYGNN 310 (1165)
Q Consensus 285 p~a~~ilLan~-~r~aIYalhl~~g~~ 310 (1165)
.+|.|.|+|-+ .|-.=|-.-+.||-+
T Consensus 192 ~~~~f~l~aPpi~K~~kYNY~VSYG~~ 218 (465)
T PF01690_consen 192 DDASFFLVAPPIQKTSKYNYVVSYGGY 218 (465)
T ss_pred CCceEEEecCCcccccccceEEEeccc
Confidence 78888888864 566778888888887
No 336
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=51.99 E-value=2.6e+02 Score=29.37 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=19.3
Q ss_pred eecCCcEEEEeccCCCcEEEEEeecC
Q 001070 283 VLSQAGLLLFANAKKNAIYSVHLGYG 308 (1165)
Q Consensus 283 ~~p~a~~ilLan~~r~aIYalhl~~g 308 (1165)
...+++.|++.+ +...||++.+.-|
T Consensus 208 ~~~~~~~l~~~~-~~~~l~~~d~~tG 232 (238)
T PF13360_consen 208 PSVDGGTLYVTS-SDGRLYALDLKTG 232 (238)
T ss_dssp EECCCTEEEEEE-TTTEEEEEETTTT
T ss_pred ceeeCCEEEEEe-CCCEEEEEECCCC
Confidence 357788888888 7789999887644
No 337
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=51.70 E-value=38 Score=41.54 Aligned_cols=72 Identities=15% Similarity=0.151 Sum_probs=48.8
Q ss_pred ccccEeee----cCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc--------------------------EEEeecCCC
Q 001070 148 LIGRQIAV----NKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK--------------------------IKIWEDSKV 196 (1165)
Q Consensus 148 ~~GR~IAV----n~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q--------------------------VriWD~~~g 196 (1165)
.+|+-.|| ||||++-+-....|.|+||.+ ++|.+=+..+. ||++|+.+|
T Consensus 400 ~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 400 DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 35776665 799999999999999999998 66655444444 888888877
Q ss_pred ceeEEecCCCCCCcceeEeecCCCCCC
Q 001070 197 APLIILKPHGGQPVNSAQYLTAPNQAG 223 (1165)
Q Consensus 197 ~pl~~lephdG~sV~SVaFl~aP~~~d 223 (1165)
.-..+-.|. + -=||=|| .|++..
T Consensus 480 Kiy~vTT~t-a-~DfsPaF--D~d~ry 502 (668)
T COG4946 480 KIYDVTTPT-A-YDFSPAF--DPDGRY 502 (668)
T ss_pred eEEEecCCc-c-cccCccc--CCCCcE
Confidence 544444433 1 2255566 466655
No 338
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=51.44 E-value=99 Score=35.42 Aligned_cols=113 Identities=16% Similarity=0.193 Sum_probs=67.5
Q ss_pred eEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCC-----cEEEEeccCCCcEEEEEeecCCC
Q 001070 236 EVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQA-----GLLLFANAKKNAIYSVHLGYGNN 310 (1165)
Q Consensus 236 tIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a-----~~ilLan~~r~aIYalhl~~g~~ 310 (1165)
.|-+||+.+. +-+++++|+.+.-. ...|++.++++... +++.++|....+|.++-+..|..
T Consensus 35 KLv~~Dl~t~------------~li~~~~~p~~~~~--~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s 100 (287)
T PF03022_consen 35 KLVAFDLKTN------------QLIRRYPFPPDIAP--PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKS 100 (287)
T ss_dssp EEEEEETTTT------------CEEEEEE--CCCS---TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEE
T ss_pred EEEEEECCCC------------cEEEEEECChHHcc--cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcE
Confidence 5666777544 78999999876542 46899999999853 69999999999999998887544
Q ss_pred cc------------ccccccccccccccceeeeeecc-CCCCcc-------eEEEEEeehhhhhhhcccccc
Q 001070 311 SA------------ATRIDYIAEFTVTMPVLSFTGTI-DPPSEH-------IIKLYCVQTQAIQQYSLNLFQ 362 (1165)
Q Consensus 311 ~~------------~~r~dyiaeF~v~~PILSft~~~-d~~ge~-------~vq~yCvQtqAIQqy~l~~~~ 362 (1165)
=. ......--.|...-.|..+.... ++||+- .-++|.|=|..++...+....
T Consensus 101 ~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~ 172 (287)
T PF03022_consen 101 WRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQ 172 (287)
T ss_dssp EEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH
T ss_pred EEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccc
Confidence 11 00001111233333332222222 235542 257899999998887665444
No 339
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=50.04 E-value=56 Score=38.88 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001070 746 DMLNQLMTMQKELQKQMSNLVTLPVTKEGRRLEASLGRGIEKAVKASTDALWARFHE 802 (1165)
Q Consensus 746 ~~l~ql~~~qke~qkqm~~~v~~plsKE~kklE~~L~~~ieK~lk~eld~L~~R~dE 802 (1165)
..|.+|=..|.+|+++|.. |.+-+++||..+..+++ .|+++|..|-.||+.
T Consensus 336 ~~l~~le~~q~~l~~~l~~-----~~~~L~~ve~~~~~N~~-~i~~n~~~le~Ri~~ 386 (388)
T PF04912_consen 336 QTLSELESQQSDLQSQLKK-----WEELLNKVEEKFKENME-TIEKNVKKLEERIAK 386 (388)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Confidence 4677777888888888887 88888999999888887 477788888888764
No 340
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=49.56 E-value=50 Score=31.06 Aligned_cols=28 Identities=18% Similarity=0.549 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001070 818 ITGLITNLINKDLTASLEKLVKKELAAV 845 (1165)
Q Consensus 818 LL~LVS~~LnktL~~nLEk~LKkeV~sV 845 (1165)
|-=|+.+-|++||+..||+.|++||..+
T Consensus 43 LRPmLkeWLD~nLP~lVErlVr~EIeRi 70 (73)
T PF10691_consen 43 LRPMLKEWLDENLPGLVERLVREEIERI 70 (73)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3348889999999999999999999843
No 341
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=49.37 E-value=6.8e+02 Score=32.08 Aligned_cols=30 Identities=17% Similarity=0.154 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001070 929 CKAMFEQVDATFQKGMVEHTTATLQHFEST 958 (1165)
Q Consensus 929 cq~MFqQV~~~F~rGm~E~~~qlQqq~dSa 958 (1165)
.+..|++--.+++++..++.+++|++++..
T Consensus 255 ~~~~~~~~~~~~~~qh~~~~q~~q~q~~~~ 284 (757)
T KOG4368|consen 255 VQLAFQQQIQTLKTQHEEFVQQQQQQMPQM 284 (757)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 344566666777788888888887776543
No 342
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=49.02 E-value=1e+02 Score=40.06 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=38.2
Q ss_pred EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcC
Q 001070 188 IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEE 246 (1165)
Q Consensus 188 VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~ 246 (1165)
|-|||...+.-+--+.+| .++|..++|+ |.+.+-+.++..=..-.+|.||+..+|+
T Consensus 91 Iil~d~~~~s~~~~l~~~-~~~~qdl~W~--~~rd~Srd~LlaIh~ss~lvLwntdtG~ 146 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHS-NDSVQDLCWV--PARDDSRDVLLAIHGSSTLVLWNTDTGE 146 (1062)
T ss_pred EEEEEehhhhhhhhhcCC-Ccchhheeee--eccCcchheeEEecCCcEEEEEEccCCc
Confidence 889999988744455555 5799999998 4444432233334445689999887775
No 343
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=48.07 E-value=67 Score=41.06 Aligned_cols=131 Identities=18% Similarity=0.235 Sum_probs=86.6
Q ss_pred cEeeecCceEEEeecCCcEEEEeCcc-hhhHhhc--CCcc---------------------EEEeecCCCce--eEEecC
Q 001070 151 RQIAVNKHYVCYGLKGGNVRVLNLNT-ATRSLLR--GHTK---------------------IKIWEDSKVAP--LIILKP 204 (1165)
Q Consensus 151 R~IAVn~~yIayG~kdg~IRVwdi~t-~ir~llr--GH~q---------------------VriWD~~~g~p--l~~lep 204 (1165)
+-++.+++|||-|+.-|.+-++++++ ..|.+-- +|.. |-|+...++.| +..+.|
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP 118 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence 44677899999999999999999999 5555444 4555 66666666544 444444
Q ss_pred CC---CCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcce-EEEEeccCCCCCccccccEEE
Q 001070 205 HG---GQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKC-TQTLDLKSSAKPRVEEAFFNQ 280 (1165)
Q Consensus 205 hd---G~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C-~QTLe~~~s~~~~~~~aff~s 280 (1165)
.| +..|.+++| .+|++- +. +|.--.+|.+-.|++.. .+.| .|+|-- ++.- -
T Consensus 119 ~d~~~~~rVTal~W--s~~~~k---~y-sGD~~Gkv~~~~L~s~~---------~~~~~~q~il~--------~ds~--I 173 (726)
T KOG3621|consen 119 CDKSHKCRVTALEW--SKNGMK---LY-SGDSQGKVVLTELDSRQ---------AFLSKSQEILS--------EDSE--I 173 (726)
T ss_pred ccccCCceEEEEEe--cccccE---Ee-ecCCCceEEEEEechhh---------hhccccceeec--------cCcc--e
Confidence 43 568999999 466644 44 68777788877775521 1122 233331 1111 3
Q ss_pred EEeecCCcEEEEeccCCCcEEEEEee
Q 001070 281 VVVLSQAGLLLFANAKKNAIYSVHLG 306 (1165)
Q Consensus 281 V~~~p~a~~ilLan~~r~aIYalhl~ 306 (1165)
|.+|---++||+|+-+|--+.-.+.+
T Consensus 174 VQlD~~q~~LLVStl~r~~Lc~tE~e 199 (726)
T KOG3621|consen 174 VQLDYLQSYLLVSTLTRCILCQTEAE 199 (726)
T ss_pred EEeecccceehHhhhhhhheeecchh
Confidence 56788889999999988777655444
No 344
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=47.40 E-value=16 Score=45.88 Aligned_cols=50 Identities=16% Similarity=0.347 Sum_probs=35.0
Q ss_pred Cceee---cCCceEEecccCCCCCCCCCCcccccccccCCCcccccccEeeecCceEEEeecCCcEEEEeCcc
Q 001070 107 YGKRV---FGDYVAYDVDAVEEGREPTQQLEVNPITKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNT 176 (1165)
Q Consensus 107 ~Gr~l---~g~~~~~dVd~~~~ge~~~pqlev~pIt~Y~sd~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t 176 (1165)
+|..| ---+.+.+++. ||| +|+ +-|-|.| |||+||-|.+||.||+.|+.+
T Consensus 41 ~gelli~R~n~qRlwtip~--p~~------~v~--~sL~W~~----------DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 41 KGELLIHRLNWQRLWTIPI--PGE------NVT--ASLCWRP----------DGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred CCcEEEEEeccceeEeccC--CCC------ccc--eeeeecC----------CCCEEEEEecCCeEEEEEccC
Confidence 67444 11577777765 344 344 6777877 677777899999999998765
No 345
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=46.97 E-value=2e+02 Score=34.83 Aligned_cols=28 Identities=29% Similarity=0.275 Sum_probs=18.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001070 797 WARFHEENARNEKLLRDRTQQITGLITN 824 (1165)
Q Consensus 797 ~~R~dEerr~rEaa~~~RQ~qLL~LVS~ 824 (1165)
-+|+.|-|.+-+++.+.||.=--++||.
T Consensus 271 IqrlrelnqrL~~EL~~~raLaeqList 298 (497)
T COG3851 271 IQRLRELNQRLQKELARNRALAEQLIST 298 (497)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 4567777777777777777655566666
No 346
>PRK14142 heat shock protein GrpE; Provisional
Probab=46.73 E-value=1.1e+02 Score=34.40 Aligned_cols=45 Identities=16% Similarity=0.230 Sum_probs=30.1
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 788 AVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVKK 840 (1165)
Q Consensus 788 ~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk~LKk 840 (1165)
++.++|+++.+|.+.++..- +.-.+-+++.++| .+-+|||++|+.
T Consensus 58 R~~AEfEN~RKR~erE~e~~------~~~A~e~~~kdLL--pVlDnLERAL~~ 102 (223)
T PRK14142 58 RVQADFANYRKRALRDQQAA------ADRAKASVVSQLL--GVLDDLERARKH 102 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHh--chHhHHHHHHhc
Confidence 55688889988888766332 3444455555555 566889998854
No 347
>PRK14163 heat shock protein GrpE; Provisional
Probab=46.60 E-value=2.2e+02 Score=31.95 Aligned_cols=46 Identities=9% Similarity=0.237 Sum_probs=29.5
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 787 KAVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVKK 840 (1165)
Q Consensus 787 K~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk~LKk 840 (1165)
.++.++|+++.+|.+.++..- +.-.+-+++.++| .+-++||+.|..
T Consensus 64 lR~~AEfeN~rkR~~kE~e~~------~~~a~~~~~~~LL--pVlDnLerAl~~ 109 (214)
T PRK14163 64 QRLQAEYQNYRRRVERDRVTV------KEIAVANLLSELL--PVLDDVGRAREH 109 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHh--hhHhHHHHHHhc
Confidence 356689999999988876433 2333444444444 455888888764
No 348
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=46.36 E-value=57 Score=38.07 Aligned_cols=78 Identities=12% Similarity=0.164 Sum_probs=47.8
Q ss_pred EEEeecCCcEEEEeCcc-hhhH--hhcCCcc-----------------------EEEeecC-CCceeEE-ecCCCCCCcc
Q 001070 160 VCYGLKGGNVRVLNLNT-ATRS--LLRGHTK-----------------------IKIWEDS-KVAPLII-LKPHGGQPVN 211 (1165)
Q Consensus 160 IayG~kdg~IRVwdi~t-~ir~--llrGH~q-----------------------VriWD~~-~g~pl~~-lephdG~sV~ 211 (1165)
|+.+..+|.|-+.+... .+.. ..++|+- ++.||.| .+..+-+ -+-|+ --|.
T Consensus 136 i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~-~GV~ 214 (339)
T KOG0280|consen 136 IFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHT-SGVV 214 (339)
T ss_pred EEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeee-cceE
Confidence 44566677777666665 5555 6677765 8888888 3322211 22332 1366
Q ss_pred eeEeecCCCCCCceEEEeecCCCceEEEeEcc
Q 001070 212 SAQYLTAPNQAGHIILVTAGPLNREVKLWASA 243 (1165)
Q Consensus 212 SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a 243 (1165)
|+-= +|..|. .|..|+-|-+|++||.-
T Consensus 215 SI~s--s~~~~~---~I~TGsYDe~i~~~DtR 241 (339)
T KOG0280|consen 215 SIYS--SPPKPT---YIATGSYDECIRVLDTR 241 (339)
T ss_pred EEec--CCCCCc---eEEEeccccceeeeehh
Confidence 6554 455444 34569999999999984
No 349
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=45.98 E-value=7.2e+02 Score=31.41 Aligned_cols=82 Identities=17% Similarity=0.259 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh---hcccchhhhHHHHHHHHHHH------HHHHHHHhHHHHHHHHHHHHHhHHHH
Q 001070 740 QVIAMQDMLNQLMTMQKELQKQMSN---LVTLPVTKEGRRLEASLGRG------IEKAVKASTDALWARFHEENARNEKL 810 (1165)
Q Consensus 740 q~~~mq~~l~ql~~~qke~qkqm~~---~v~~plsKE~kklE~~L~~~------ieK~lk~eld~L~~R~dEerr~rEaa 810 (1165)
.++.||.-++.+ =.||.+.|.. -.-.-+-|-+-.||.++.+. .++.+..|++.-|++|++-...+=.+
T Consensus 168 E~arm~aqi~~l---~eEmS~r~l~reakl~~~lqk~f~alEk~mka~e~~rl~~E~~lreElE~rW~~lq~l~Ee~l~a 244 (531)
T PF15450_consen 168 EVARMQAQITKL---GEEMSLRFLKREAKLCSFLQKSFLALEKRMKAQESSRLRTERSLREELESRWQKLQELTEERLRA 244 (531)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777655554 3344443321 11123444444588888777 88888888999999888777666555
Q ss_pred HHHHHHHHHHHHHH
Q 001070 811 LRDRTQQITGLITN 824 (1165)
Q Consensus 811 ~~~RQ~qLL~LVS~ 824 (1165)
.+..++..++-++.
T Consensus 245 l~gq~ev~~~~~~~ 258 (531)
T PF15450_consen 245 LQGQQEVGLGGIQS 258 (531)
T ss_pred HHhhHhhhhhhhhH
Confidence 55556655555544
No 350
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=45.97 E-value=29 Score=48.22 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=31.9
Q ss_pred EEEeecCCC---ceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEc
Q 001070 188 IKIWEDSKV---APLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWAS 242 (1165)
Q Consensus 188 VriWD~~~g---~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~ 242 (1165)
|.+||.-.. .+++ .-||| .+..++|. |-++.|| +|+-+.+|+|||+
T Consensus 2317 ~~lwDtl~~~~~s~v~--~~H~~-gaT~l~~~-----P~~qlli-sggr~G~v~l~D~ 2365 (2439)
T KOG1064|consen 2317 VCLWDTLLPPMNSLVH--TCHDG-GATVLAYA-----PKHQLLI-SGGRKGEVCLFDI 2365 (2439)
T ss_pred ccchhcccCcccceee--eecCC-CceEEEEc-----CcceEEE-ecCCcCcEEEeeh
Confidence 667776431 2355 56664 78888994 4556445 7889999999996
No 351
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=45.96 E-value=26 Score=43.31 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=36.1
Q ss_pred CcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeec
Q 001070 209 PVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLS 285 (1165)
Q Consensus 209 sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p 285 (1165)
-.-+|+|. ||++|+|||| -|-=|.+|.....+ -+ -++ -+|+..++.|++||
T Consensus 334 GLLCvcWS-----PDGKyIvtGG-EDDLVtVwSf~erR------------VV--ARG------qGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 334 GLLCVCWS-----PDGKYIVTGG-EDDLVTVWSFEERR------------VV--ARG------QGHKSWVSVVAFDP 384 (636)
T ss_pred ceEEEEEc-----CCccEEEecC-CcceEEEEEeccce------------EE--Eec------cccccceeeEeecc
Confidence 46789994 5557688855 67789999985542 11 112 27999999999997
No 352
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=45.18 E-value=57 Score=35.97 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=38.7
Q ss_pred ccccccE---eeecCceEEEeecCCcEEEEeCcc--------hhhHhhc--------CCccEEEeec-CCCceeEEec
Q 001070 146 ELLIGRQ---IAVNKHYVCYGLKGGNVRVLNLNT--------ATRSLLR--------GHTKIKIWED-SKVAPLIILK 203 (1165)
Q Consensus 146 ~~~~GR~---IAVn~~yIayG~kdg~IRVwdi~t--------~ir~llr--------GH~qVriWD~-~~g~pl~~le 203 (1165)
.+.+|-. +..+|+||+--..+|+++|||+.+ .+-.+|. .+..|+--.+ .+|.|+..+.
T Consensus 8 ~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls 85 (219)
T PF07569_consen 8 PIVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS 85 (219)
T ss_pred cEecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe
Confidence 3444444 455899999999999999999996 3334564 3333443333 4578888875
No 353
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=44.48 E-value=1.2e+02 Score=35.53 Aligned_cols=85 Identities=11% Similarity=0.132 Sum_probs=52.2
Q ss_pred EEEeecCCCceeEEecCCCCCCcc-eeEeecCCCCCCceEEEee----cCCCceEEEeEccCcCCCCCCCCCCCcceEEE
Q 001070 188 IKIWEDSKVAPLIILKPHGGQPVN-SAQYLTAPNQAGHIILVTA----GPLNREVKLWASASEEGWSLPTHAESWKCTQT 262 (1165)
Q Consensus 188 VriWD~~~g~pl~~lephdG~sV~-SVaFl~aP~~~d~~~lvts----GslnrtIKLW~~a~~~~~~~~~~~~~w~C~QT 262 (1165)
..|||.++|..++++.+.+|.--| ..+|. +|++.|.|+ ...-.-|-+||.+. ...-+..
T Consensus 30 ~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs-----~dG~~LytTEnd~~~g~G~IgVyd~~~-----------~~~ri~E 93 (305)
T PF07433_consen 30 ALVFDCRTGQLLQRLWAPPGRHFYGHGVFS-----PDGRLLYTTENDYETGRGVIGVYDAAR-----------GYRRIGE 93 (305)
T ss_pred EEEEEcCCCceeeEEcCCCCCEEecCEEEc-----CCCCEEEEeccccCCCcEEEEEEECcC-----------CcEEEeE
Confidence 668999999888888877664222 34552 444556664 33345688899752 1233333
Q ss_pred EeccCCCCCccccccEEEEEeecCCcEEEEeccC
Q 001070 263 LDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAK 296 (1165)
Q Consensus 263 Le~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~ 296 (1165)
|....-- .| ++.+.||+..|++||--
T Consensus 94 ~~s~GIG---PH-----el~l~pDG~tLvVANGG 119 (305)
T PF07433_consen 94 FPSHGIG---PH-----ELLLMPDGETLVVANGG 119 (305)
T ss_pred ecCCCcC---hh-----hEEEcCCCCEEEEEcCC
Confidence 3321111 13 67789999999999864
No 354
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=44.30 E-value=88 Score=37.74 Aligned_cols=71 Identities=21% Similarity=0.314 Sum_probs=38.7
Q ss_pred Cceee------cCCceEEecccCCCCCCCCCCcccccccccCCCcccccccEeeecCceEEEeecCCcEEEEeCcc-hhh
Q 001070 107 YGKRV------FGDYVAYDVDAVEEGREPTQQLEVNPITKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNT-ATR 179 (1165)
Q Consensus 107 ~Gr~l------~g~~~~~dVd~~~~ge~~~pqlev~pIt~Y~sd~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t-~ir 179 (1165)
+|++| .|.+.+|-+|. .-||+- | +|...-+. ..|-.++.++++|+|--.++.++-+|++| ..|
T Consensus 46 dG~kllF~s~~dg~~nly~lDL-~t~~i~--Q-----LTdg~g~~--~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~ 115 (386)
T PF14583_consen 46 DGRKLLFASDFDGNRNLYLLDL-ATGEIT--Q-----LTDGPGDN--TFGGFLSPDDRALYYVKNGRSLRRVDLDTLEER 115 (386)
T ss_dssp TS-EEEEEE-TTSS-EEEEEET-TT-EEE--E--------SS-B---TTT-EE-TTSSEEEEEETTTEEEEEETTT--EE
T ss_pred CCCEEEEEeccCCCcceEEEEc-ccCEEE--E-----CccCCCCC--ccceEEecCCCeEEEEECCCeEEEEECCcCcEE
Confidence 68777 24677888887 444443 4 34433222 22667888899999965567888899998 555
Q ss_pred HhhcCCcc
Q 001070 180 SLLRGHTK 187 (1165)
Q Consensus 180 ~llrGH~q 187 (1165)
.+.+=.+.
T Consensus 116 ~vy~~p~~ 123 (386)
T PF14583_consen 116 VVYEVPDD 123 (386)
T ss_dssp EEEE--TT
T ss_pred EEEECCcc
Confidence 55444443
No 355
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=44.25 E-value=46 Score=41.53 Aligned_cols=62 Identities=16% Similarity=0.247 Sum_probs=40.1
Q ss_pred cCceEEEeecCCcEEEEeCcchhhHhhcCCccEEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCc
Q 001070 156 NKHYVCYGLKGGNVRVLNLNTATRSLLRGHTKIKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNR 235 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t~ir~llrGH~qVriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnr 235 (1165)
+...++-|.+||.|++||..+.+-.+. + . +=.+..++| .|+| -+++ -|+.-.
T Consensus 270 ~E~kLvlGC~DgSiiLyD~~~~~t~~~------k-----a-----------~~~P~~iaW--Hp~g---ai~~-V~s~qG 321 (545)
T PF11768_consen 270 SEDKLVLGCEDGSIILYDTTRGVTLLA------K-----A-----------EFIPTLIAW--HPDG---AIFV-VGSEQG 321 (545)
T ss_pred ccceEEEEecCCeEEEEEcCCCeeeee------e-----e-----------cccceEEEE--cCCC---cEEE-EEcCCc
Confidence 467788888899988888865422211 0 0 113556667 4444 3244 477889
Q ss_pred eEEEeEccCc
Q 001070 236 EVKLWASASE 245 (1165)
Q Consensus 236 tIKLW~~a~~ 245 (1165)
+|++||.|..
T Consensus 322 elQ~FD~ALs 331 (545)
T PF11768_consen 322 ELQCFDMALS 331 (545)
T ss_pred eEEEEEeecC
Confidence 9999999875
No 356
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=44.01 E-value=8.8e+02 Score=31.80 Aligned_cols=136 Identities=20% Similarity=0.288 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHH---HHH------HHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001070 748 LNQLMTMQKELQKQMSNLVTLPVTKEGRRLEASLGR---GIE------KAVKASTDALWARFHEENARNEKLLRDRTQQI 818 (1165)
Q Consensus 748 l~ql~~~qke~qkqm~~~v~~plsKE~kklE~~L~~---~ie------K~lk~eld~L~~R~dEerr~rEaa~~~RQ~qL 818 (1165)
|.+.+.-..||.|+...-| --+.-|++|.+.-+++ .|. .++.+.+|..|.-++.++|..+...++|++-+
T Consensus 507 lk~il~~Kee~Ek~~~E~I-~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~l 585 (961)
T KOG4673|consen 507 LKSILRDKEETEKLLQETI-EKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESML 585 (961)
T ss_pred HHHHhhhHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHH
Confidence 3444555566666554421 1123344555544443 221 45677788888888888888877888888888
Q ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHH--------------HhhhhhHhhhhhhHHHHHHHHHHHHHhhcchhh--
Q 001070 819 TGLITNLINKDLTA------SLEKLVKKELA--------------AVGPAIVRTISPSIEKTITSAIVESFQRGVGDK-- 876 (1165)
Q Consensus 819 L~LVS~~LnktL~~------nLEk~LKkeV~--------------sVvPAI~~~t~~avekqlss~l~eslq~~l~dk-- 876 (1165)
..-|++ |-.+|.. .=|-.++.||. .++..|..+|.+-| .|| ++||.+++..
T Consensus 586 vqqv~d-LR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLl-RQI-----E~lQ~tl~~~~t 658 (961)
T KOG4673|consen 586 VQQVED-LRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLL-RQI-----EALQETLSKAAT 658 (961)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHH-HHH-----HHHHHHHhhhhh
Confidence 887777 4444433 33444555554 34555556666544 333 2355555422
Q ss_pred hHHHHHHHHHHHhHH
Q 001070 877 AVNQLERSVNSRLEA 891 (1165)
Q Consensus 877 ~vnqLeK~V~s~Lp~ 891 (1165)
+-+..|+.|..+|-+
T Consensus 659 awereE~~l~~rL~d 673 (961)
T KOG4673|consen 659 AWEREERSLNERLSD 673 (961)
T ss_pred HHHHHHHHHHHhhhh
Confidence 256777888888773
No 357
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=43.17 E-value=61 Score=39.92 Aligned_cols=99 Identities=13% Similarity=0.229 Sum_probs=67.0
Q ss_pred EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccC
Q 001070 188 IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKS 267 (1165)
Q Consensus 188 VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~ 267 (1165)
|-+||..++.++.+|+...-+.|.-.-|+ |...+.- ++ +.+-|+.+++-.+. +++.|..|..+
T Consensus 166 vv~WdW~~~~~~l~f~SGH~~NvfQaKFi--P~s~d~t-i~-~~s~dgqvr~s~i~-----------~t~~~e~t~rl-- 228 (559)
T KOG1334|consen 166 VVVWDWVSGSPKLSFESGHCNNVFQAKFI--PFSGDRT-IV-TSSRDGQVRVSEIL-----------ETGYVENTKRL-- 228 (559)
T ss_pred EEeehhhccCcccccccccccchhhhhcc--CCCCCcC-ce-eccccCceeeeeec-----------cccceecceec--
Confidence 56677777877777764222378888885 6665533 45 45678888865542 33466666664
Q ss_pred CCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEeec
Q 001070 268 SAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGY 307 (1165)
Q Consensus 268 s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~ 307 (1165)
..|+.-++..++.|+.-+-|+++..-.++.-+-+.-
T Consensus 229 ----~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~ 264 (559)
T KOG1334|consen 229 ----APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQ 264 (559)
T ss_pred ----ccccCccceeeecCCCCCcccccccccceeeeeecc
Confidence 135666779999999999999999888776555443
No 358
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=43.15 E-value=73 Score=36.72 Aligned_cols=63 Identities=14% Similarity=0.055 Sum_probs=39.9
Q ss_pred eeecCceEEEeecCCcEEEEeCcc-hhhH---hhcCCcc------------------EEEeecCCCceeEEecCCCCCCc
Q 001070 153 IAVNKHYVCYGLKGGNVRVLNLNT-ATRS---LLRGHTK------------------IKIWEDSKVAPLIILKPHGGQPV 210 (1165)
Q Consensus 153 IAVn~~yIayG~kdg~IRVwdi~t-~ir~---llrGH~q------------------VriWD~~~g~pl~~lephdG~sV 210 (1165)
.++++.+|..+..||.|..||..+ .+.. -+.+... |++||..+|..+.+++.+++.-.
T Consensus 275 p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~ 354 (377)
T TIGR03300 275 PAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIA 354 (377)
T ss_pred ceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccc
Confidence 456677888888899999999987 3322 1222111 77888888877777776543233
Q ss_pred ceeEe
Q 001070 211 NSAQY 215 (1165)
Q Consensus 211 ~SVaF 215 (1165)
++-++
T Consensus 355 ~sp~~ 359 (377)
T TIGR03300 355 SPPVV 359 (377)
T ss_pred cCCEE
Confidence 44444
No 359
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.06 E-value=30 Score=42.80 Aligned_cols=77 Identities=14% Similarity=0.254 Sum_probs=50.1
Q ss_pred eEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccE
Q 001070 199 LIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFF 278 (1165)
Q Consensus 199 l~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff 278 (1165)
|..|.+|. +.|..++-+|.-+. ..|+|.|||+|||.+-.+.. .-++..|.-|+. .|+.-+
T Consensus 728 L~nf~GH~-~~iRai~AidNENS------FiSASkDKTVKLWSik~EgD-----~~~tsaCQfTY~--------aHkk~i 787 (1034)
T KOG4190|consen 728 LCNFTGHQ-EKIRAIAAIDNENS------FISASKDKTVKLWSIKPEGD-----EIGTSACQFTYQ--------AHKKPI 787 (1034)
T ss_pred eecccCcH-HHhHHHHhcccccc------eeeccCCceEEEEEeccccC-----ccccceeeeEhh--------hccCcc
Confidence 45555552 47777766644433 34799999999999854410 113467988887 477777
Q ss_pred EEEEeecCCcEEEEecc
Q 001070 279 NQVVVLSQAGLLLFANA 295 (1165)
Q Consensus 279 ~sV~~~p~a~~ilLan~ 295 (1165)
+.+.+.-+-++|+-.|.
T Consensus 788 ~~igfL~~lr~i~ScD~ 804 (1034)
T KOG4190|consen 788 HDIGFLADLRSIASCDG 804 (1034)
T ss_pred cceeeeeccceeeeccC
Confidence 77777777766665554
No 360
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=43.01 E-value=9.1e+02 Score=31.73 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=40.6
Q ss_pred hhhHHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 904 SGKHALQDALKSSVEASVIPAFEKSCKAMFEQVDATFQKGMVEHTTATLQH 954 (1165)
Q Consensus 904 sv~qaIqdavr~af~stLIPAFE~scq~MFqQV~~~F~rGm~E~~~qlQqq 954 (1165)
.+...+.+.++..|...|...|++....|.++|...|+.-+.+....+...
T Consensus 425 ~l~~~~eK~l~~~l~e~v~~~l~~~~~d~Wd~I~~~f~~~~~~~~~~~~~~ 475 (742)
T PF05879_consen 425 ELVARIEKKLKSELKEPVESLLENPSPDMWDRIRKLFESATESAVSKFSDR 475 (742)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667788888888999999999999999999998888777766443
No 361
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=41.64 E-value=9.4e+02 Score=31.50 Aligned_cols=37 Identities=16% Similarity=0.123 Sum_probs=27.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhh
Q 001070 959 HSPLALVLRESVNSVSSMAQTLS---GEFVDGQRKLFDLA 995 (1165)
Q Consensus 959 KtsLv~~L~etIssmaa~q~~Lq---sEll~lQrQL~~~a 995 (1165)
|-.|...|-++-+.+.-++.++. .||.+++.++.++-
T Consensus 617 KldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 617 KLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888887777664 56888888766543
No 362
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=41.45 E-value=21 Score=38.64 Aligned_cols=9 Identities=22% Similarity=0.065 Sum_probs=3.6
Q ss_pred CCCCCCCCC
Q 001070 30 SSSAAGDNF 38 (1165)
Q Consensus 30 ~~~~~~~~~ 38 (1165)
.++|+..+.
T Consensus 174 ~~~a~~~~~ 182 (225)
T KOG3397|consen 174 QPSASSTVS 182 (225)
T ss_pred CcccccccC
Confidence 344443343
No 363
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=40.38 E-value=7.3e+02 Score=29.88 Aligned_cols=103 Identities=15% Similarity=0.242 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHH
Q 001070 738 FSQVIAMQDMLNQLMTMQKELQKQMSNLVTLPVTKEGRRLEAS---LGRGIEKAVKASTDALWARFHEENARNEKLLRDR 814 (1165)
Q Consensus 738 ~~q~~~mq~~l~ql~~~qke~qkqm~~~v~~plsKE~kklE~~---L~~~ieK~lk~eld~L~~R~dEerr~rEaa~~~R 814 (1165)
-.++..|+.....+-.+-.+...+|.- +...|+|-+.||+.+ |++.|+..+. ++.....++.+.+.+
T Consensus 219 R~hleqm~~~~~~I~~~~~~~~~~L~k-l~~~i~~~lekI~sREk~iN~qle~l~~-eYr~~~~~ls~~~~~-------- 288 (359)
T PF10498_consen 219 RSHLEQMKQHKKSIESALPETKSQLDK-LQQDISKTLEKIESREKYINNQLEPLIQ-EYRSAQDELSEVQEK-------- 288 (359)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHH--------
Confidence 455666666666666666666666665 445777777777655 6666665443 344444444443322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhhHh
Q 001070 815 TQQITGLITNLINKDLTASLEK--LVKKELAAVGPAIVR 851 (1165)
Q Consensus 815 Q~qLL~LVS~~LnktL~~nLEk--~LKkeV~sVvPAI~~ 851 (1165)
..+...-|+. +++.|+..-|. .+|.+|..=+..+.+
T Consensus 289 y~~~s~~V~~-~t~~L~~IseeLe~vK~emeerg~~mtD 326 (359)
T PF10498_consen 289 YKQASEGVSE-RTRELAEISEELEQVKQEMEERGSSMTD 326 (359)
T ss_pred HHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 2233333333 33333333332 256777644445544
No 364
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=39.31 E-value=9.9 Score=43.13 Aligned_cols=14 Identities=50% Similarity=1.177 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCC
Q 001070 23 FPPYPPPSSSAAGD 36 (1165)
Q Consensus 23 ~~~~~~~~~~~~~~ 36 (1165)
|+|.|||..|..|.
T Consensus 172 ~Pp~PPpp~P~lg~ 185 (264)
T PF06003_consen 172 FPPPPPPPPPGLGK 185 (264)
T ss_dssp --------------
T ss_pred CCCCCCCCCCCcCc
Confidence 44444444444433
No 365
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.19 E-value=5.4e+02 Score=33.69 Aligned_cols=40 Identities=25% Similarity=0.327 Sum_probs=25.0
Q ss_pred HHHHHHHhhhccc--------ChHHHHHHHHHHHHHcCCCCchhHHhH
Q 001070 1083 LSLLQQLACDINK--------DTARKLAWLTDVAAAINPADPMIAVHA 1122 (1165)
Q Consensus 1083 LSLIQQLSsDL~t--------dt~lKL~WLEeal~aLDpsDP~Irehv 1122 (1165)
-+|.+|+-.|+.. +...-+..|++++..+|.-||.+|+-+
T Consensus 186 ~~l~~qi~~df~~~F~~~~~~~~~~~l~~l~daC~v~d~lepsvreel 233 (793)
T KOG2180|consen 186 KSLLSQIFQDFKAAFSGGETHEEALLLQKLSDACLVVDALEPSVREEL 233 (793)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHHhCCccHHHH
Confidence 3455566666632 334567778888877777776666544
No 366
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.18 E-value=37 Score=45.02 Aligned_cols=74 Identities=14% Similarity=0.195 Sum_probs=49.2
Q ss_pred CCCCCCCCCcccccccccCCCcccccccEeeecCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc------EEEeecCCC
Q 001070 124 EEGREPTQQLEVNPITKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK------IKIWEDSKV 196 (1165)
Q Consensus 124 ~~ge~~~pqlev~pIt~Y~sd~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q------VriWD~~~g 196 (1165)
..||-- +..|++++ +.-||+++|-|.-+|+|.|||+++ .+-..|.-|.+ +-.|+-+..
T Consensus 124 ~~ne~v--~~~Vtsva-------------fn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS 188 (1206)
T KOG2079|consen 124 HQNERV--QGPVTSVA-------------FNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNS 188 (1206)
T ss_pred hcCCcc--CCcceeeE-------------ecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCc
Confidence 446654 66777655 445799999999999999999999 66666655555 334443322
Q ss_pred ceeEEecCCCCCCcceeEe
Q 001070 197 APLIILKPHGGQPVNSAQY 215 (1165)
Q Consensus 197 ~pl~~lephdG~sV~SVaF 215 (1165)
-.+....|-+||...|
T Consensus 189 ---~llt~D~~Gsf~~lv~ 204 (1206)
T KOG2079|consen 189 ---KLLTSDTGGSFWKLVF 204 (1206)
T ss_pred ---EEEEccCCCceEEEEe
Confidence 2344444446777777
No 367
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=38.60 E-value=1.1e+03 Score=31.29 Aligned_cols=38 Identities=26% Similarity=0.377 Sum_probs=21.7
Q ss_pred HHHH---Hhhhhcccchhhh-HHHHHHHHHHHHHH-----HHHHhHHHH
Q 001070 757 ELQK---QMSNLVTLPVTKE-GRRLEASLGRGIEK-----AVKASTDAL 796 (1165)
Q Consensus 757 e~qk---qm~~~v~~plsKE-~kklE~~L~~~ieK-----~lk~eld~L 796 (1165)
|+.| +..-|- |+-+| +.||..-+..+|.. .|+.-||.|
T Consensus 494 E~sKa~~~~~~~~--~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~L 540 (762)
T PLN03229 494 EFSKANSQDQLMH--PVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDML 540 (762)
T ss_pred HHHhccccccccc--HHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHH
Confidence 7777 332222 55555 77777666666665 555555554
No 368
>PRK14143 heat shock protein GrpE; Provisional
Probab=37.68 E-value=3e+02 Score=31.35 Aligned_cols=44 Identities=16% Similarity=0.229 Sum_probs=29.3
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 788 AVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVK 839 (1165)
Q Consensus 788 ~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk~LK 839 (1165)
++.++|+++.+|...++.. .|...+-+++.++| .+-+|||++|.
T Consensus 92 R~~AdfeN~RKR~~kE~e~------~~~~a~~~~~~~lL--pV~DnLerAl~ 135 (238)
T PRK14143 92 RIAADFDNFRKRTSREQED------LRLQLKCNTLSEIL--PVVDNFERARQ 135 (238)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH--HHHhHHHHHHh
Confidence 5668888888888776633 23344555555555 56688998886
No 369
>PRK09866 hypothetical protein; Provisional
Probab=37.54 E-value=1.1e+03 Score=31.08 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=30.5
Q ss_pred HHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 001070 915 SSVEASVIPAFEKSCKAMFEQVDATFQKGMVEHTTATLQHFESTH 959 (1165)
Q Consensus 915 ~af~stLIPAFE~scq~MFqQV~~~F~rGm~E~~~qlQqq~dSaK 959 (1165)
..+...+=--|....+++..||+..+..||...+.++...++..+
T Consensus 644 ~~~~~~~~~~~~~~~~~~~~~v~~~v~~~~~~ff~~f~~~~~~~~ 688 (741)
T PRK09866 644 RALSAEVDLYCQQMAKVLAEQVDESVTAGMNTFFAEFASCLTELQ 688 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 344444445567777788888888888999888887754443333
No 370
>PRK14164 heat shock protein GrpE; Provisional
Probab=37.37 E-value=1.9e+02 Score=32.52 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=29.7
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 787 KAVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVKK 840 (1165)
Q Consensus 787 K~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk~LKk 840 (1165)
.++.++|+++.+|.+.++.. .+.-.+-+++.++| .+-++||+.++.
T Consensus 94 lR~~AE~eN~RkR~~rE~e~------~~~~a~~~~~~~LL--pVlDnLerAl~~ 139 (218)
T PRK14164 94 QRVTAEYANYRRRTERERQA------IIETAKAGVATDLL--PILDDLDLAEQH 139 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHh--hHHhHHHHHHhc
Confidence 46678999999998766533 23334444555554 456888888863
No 371
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=37.18 E-value=9.3e+02 Score=30.17 Aligned_cols=165 Identities=15% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001070 743 AMQDMLNQLMTMQKELQKQMSNLVTLPVTKEGRRLEASLGRGIEKAVKASTDALWARFHEENARNEKLLRDRTQQITGLI 822 (1165)
Q Consensus 743 ~mq~~l~ql~~~qke~qkqm~~~v~~plsKE~kklE~~L~~~ieK~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LV 822 (1165)
.++..-.+|-.++.+.++.+...+-.--.+.+++++..+..+++..+.+..+.+-..|+.++...++...++.++-|+.-
T Consensus 259 ~i~~L~~~l~~l~~~~~~~l~~~L~~q~~e~~~~~~~~~~~~le~~~~~~~~~~~~e~~~~~~~l~~~~~~~L~~eL~~~ 338 (582)
T PF09731_consen 259 RIDALQKELAELKEEEEEELERALEEQREELLSKLREELEQELEEKRAELEEELREEFEREREELEEKYEEELRQELKRQ 338 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhHHHHHHHHHHhhh
Q 001070 823 TNLINKDLTASLEKLVKKELAAVGPAIVRTISPSIEKTITSAIVESFQRGVGDKAVNQLERSVNSRLEATVGRQIQAQFQ 902 (1165)
Q Consensus 823 S~~LnktL~~nLEk~LKkeV~sVvPAI~~~t~~avekqlss~l~eslq~~l~dk~vnqLeK~V~s~Lp~aVaraIq~~vq 902 (1165)
.. .+...++..|+..=....=...+.+...|++.=...+.. |..- ..-++.||+.+...-.......-.+++.
T Consensus 339 ~~----~~~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~-l~~~--~~~~~~le~~~~~~~~~~~~~~~~~~l~ 411 (582)
T PF09731_consen 339 EE----AHEEHLKNELREQAIELQREFEKEIKEKVEQERNGRLAK-LAEL--NSRLKALEEALDARSEAEDENRRAQQLW 411 (582)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHHHHHHHH
Q 001070 903 TSGKHALQDALKS 915 (1165)
Q Consensus 903 tsv~qaIqdavr~ 915 (1165)
-. ..+|.+++..
T Consensus 412 ~a-~~~l~~~l~~ 423 (582)
T PF09731_consen 412 LA-VDALKSALDS 423 (582)
T ss_pred HH-HHHHHHHHHc
No 372
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=36.82 E-value=1.2e+02 Score=39.83 Aligned_cols=62 Identities=13% Similarity=0.114 Sum_probs=44.2
Q ss_pred ecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEeecCC
Q 001070 230 AGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGYGN 309 (1165)
Q Consensus 230 sGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~g~ 309 (1165)
-|+.+..|||+|--+ -++.-.|.+ =.+-+..|.++.||.|||.+.-+--.||..-+.-|.
T Consensus 593 vgs~~G~IRLyd~~g------------~~AKT~lp~--------lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~~~~g~ 652 (794)
T PF08553_consen 593 VGSNKGDIRLYDRLG------------KRAKTALPG--------LGDPIIGIDVTADGKWILATCKTYLLLIDTLIKDGK 652 (794)
T ss_pred EEeCCCcEEeecccc------------hhhhhcCCC--------CCCCeeEEEecCCCcEEEEeecceEEEEEEeeecCC
Confidence 399999999999311 133333332 124456899999999999999998888888777665
Q ss_pred Cc
Q 001070 310 NS 311 (1165)
Q Consensus 310 ~~ 311 (1165)
+.
T Consensus 653 ~~ 654 (794)
T PF08553_consen 653 NS 654 (794)
T ss_pred cc
Confidence 53
No 373
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=36.52 E-value=3.9e+02 Score=27.31 Aligned_cols=13 Identities=8% Similarity=0.204 Sum_probs=7.3
Q ss_pred HhHHHHHHHHHHH
Q 001070 791 ASTDALWARFHEE 803 (1165)
Q Consensus 791 ~eld~L~~R~dEe 803 (1165)
+++.+++++|+..
T Consensus 57 ~el~~~~~~l~~~ 69 (158)
T PF03938_consen 57 KELQKLQQKLQSQ 69 (158)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHH
Confidence 4555566665554
No 374
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=36.13 E-value=8.9e+02 Score=31.59 Aligned_cols=115 Identities=13% Similarity=0.193 Sum_probs=61.1
Q ss_pred eeecCceEEE-----eecCCcEEEEeCcchhhHhhcCCccEEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEE
Q 001070 153 IAVNKHYVCY-----GLKGGNVRVLNLNTATRSLLRGHTKIKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIIL 227 (1165)
Q Consensus 153 IAVn~~yIay-----G~kdg~IRVwdi~t~ir~llrGH~qVriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~l 227 (1165)
|+-|.+|||| |.+...|||-|+.|.. .+||.-++ -+.+++| ++|+.. .|.
T Consensus 136 ~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~----------~~~d~i~~------------~~~~~~W--a~d~~~-lfY 190 (682)
T COG1770 136 ISPDHNLLAYSVDVLGDEQYTLRFKDLATGE----------ELPDEITN------------TSGSFAW--AADGKT-LFY 190 (682)
T ss_pred eCCCCceEEEEEecccccEEEEEEEeccccc----------ccchhhcc------------cccceEE--ecCCCe-EEE
Confidence 5557777777 4555566666665521 12222221 3556666 344332 344
Q ss_pred EeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccccccEEEEEeecCCcEEEEec--cCCCcEEEEEe
Q 001070 228 VTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFAN--AKKNAIYSVHL 305 (1165)
Q Consensus 228 vtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan--~~r~aIYalhl 305 (1165)
+..-...|.=|+|-...+.- .-...|-|+ | ....||.+|..+.+..|||+.- ....-|+.+..
T Consensus 191 t~~d~~~rp~kv~~h~~gt~----------~~~d~lvye---E--~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a 255 (682)
T COG1770 191 TRLDENHRPDKVWRHRLGTP----------GSSDELVYE---E--KDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDA 255 (682)
T ss_pred EEEcCCCCcceEEEEecCCC----------CCcceEEEE---c--CCCcEEEEeeeccCCceEEEEcCCCcceeEEEEec
Confidence 44444446666666544310 011112221 1 2357999999999999888764 45556666665
Q ss_pred ec
Q 001070 306 GY 307 (1165)
Q Consensus 306 ~~ 307 (1165)
+-
T Consensus 256 ~~ 257 (682)
T COG1770 256 DD 257 (682)
T ss_pred CC
Confidence 54
No 375
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=36.11 E-value=5.4e+02 Score=27.07 Aligned_cols=27 Identities=26% Similarity=0.197 Sum_probs=21.3
Q ss_pred ee-cCceEEEeecCCcEEEEeCcc-hhhH
Q 001070 154 AV-NKHYVCYGLKGGNVRVLNLNT-ATRS 180 (1165)
Q Consensus 154 AV-n~~yIayG~kdg~IRVwdi~t-~ir~ 180 (1165)
++ ++.+|..+..++.|..||+.| .+..
T Consensus 32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W 60 (238)
T PF13360_consen 32 AVPDGGRVYVASGDGNLYALDAKTGKVLW 60 (238)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTSEEEE
T ss_pred EEEeCCEEEEEcCCCEEEEEECCCCCEEE
Confidence 44 788888888999999999977 4443
No 376
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.22 E-value=1.2e+03 Score=30.91 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=12.5
Q ss_pred HHHHHHHhhhhcccchhhhHHHHHHHHHH
Q 001070 755 QKELQKQMSNLVTLPVTKEGRRLEASLGR 783 (1165)
Q Consensus 755 qke~qkqm~~~v~~plsKE~kklE~~L~~ 783 (1165)
+--|+|+|.. -.|..|+|..+.+
T Consensus 633 ~~~~~~i~~~------q~e~~klqeq~~A 655 (1104)
T COG4913 633 DFYMIKIMRQ------QGEYIKLQEQANA 655 (1104)
T ss_pred HHHhhHHHHH------HHHHHHHHHHHHH
Confidence 3344555544 4566667666544
No 377
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.21 E-value=2.9e+02 Score=32.61 Aligned_cols=33 Identities=3% Similarity=0.119 Sum_probs=29.2
Q ss_pred cccEEEEEeecCCcEEEEeccCCCcEEEEEeec
Q 001070 275 EAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGY 307 (1165)
Q Consensus 275 ~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~ 307 (1165)
.-|+-+|+++.++++|.++..+.+.+.....+-
T Consensus 216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t 248 (305)
T PF07433_consen 216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT 248 (305)
T ss_pred CCceEEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence 468999999999999999999999998886554
No 378
>PRK10115 protease 2; Provisional
Probab=35.16 E-value=4.5e+02 Score=33.94 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=20.0
Q ss_pred EeeecCceEEE-----eecCCcEEEEeCcc
Q 001070 152 QIAVNKHYVCY-----GLKGGNVRVLNLNT 176 (1165)
Q Consensus 152 ~IAVn~~yIay-----G~kdg~IRVwdi~t 176 (1165)
.++.||+||+| |.+...|+|.|+.+
T Consensus 133 ~~Spdg~~la~~~d~~G~E~~~l~v~d~~t 162 (686)
T PRK10115 133 AITPDNTIMALAEDFLSRRQYGIRFRNLET 162 (686)
T ss_pred EECCCCCEEEEEecCCCcEEEEEEEEECCC
Confidence 36668999999 55567899999987
No 379
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=35.10 E-value=8.9e+02 Score=29.32 Aligned_cols=12 Identities=17% Similarity=0.268 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHH
Q 001070 772 KEGRRLEASLGR 783 (1165)
Q Consensus 772 KE~kklE~~L~~ 783 (1165)
+|+.|+|+.|.+
T Consensus 52 r~L~k~eE~V~q 63 (465)
T KOG3973|consen 52 RELYKIEEYVRQ 63 (465)
T ss_pred HHHHHHHHHhcC
Confidence 456677877766
No 380
>PHA01972 structural protein
Probab=34.40 E-value=1.3e+03 Score=30.96 Aligned_cols=33 Identities=9% Similarity=0.264 Sum_probs=24.7
Q ss_pred HHHHHHHHhhhhcccchhhhHHHHHHHHHHHHHHHHHHhH
Q 001070 754 MQKELQKQMSNLVTLPVTKEGRRLEASLGRGIEKAVKAST 793 (1165)
Q Consensus 754 ~qke~qkqm~~~v~~plsKE~kklE~~L~~~ieK~lk~el 793 (1165)
..+...|||+. .|++.||+++...|...-.++-
T Consensus 9 V~~Aagr~L~a-------~E~~~Ie~ri~~~~r~~ar~d~ 41 (828)
T PHA01972 9 VAQAAGRQLTA-------DEIKGIEDRIKEAMRSVARKDP 41 (828)
T ss_pred HHHHhcCCCch-------HHHHHHHHHHHHHHHHHHhhCc
Confidence 34556666665 8999999999998887666655
No 381
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=34.22 E-value=1.2e+03 Score=30.61 Aligned_cols=151 Identities=12% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001070 740 QVIAMQDMLNQLMTMQKELQKQMSNLVTLPVTKEGRRLEASLGRGIEKAVKASTDALWARFHEENARNEKLLRDRTQQIT 819 (1165)
Q Consensus 740 q~~~mq~~l~ql~~~qke~qkqm~~~v~~plsKE~kklE~~L~~~ieK~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL 819 (1165)
+-.+..+.-..+-..+.++++|+.. ++++++.. +.|....+.|..||++ -..+++....|.+.|+
T Consensus 556 ~~~ar~ei~~rv~~Lk~~~e~Ql~~---------L~~l~e~~-----~~l~~~ae~LaeR~e~-a~d~Qe~L~~R~~~vl 620 (717)
T PF10168_consen 556 QDLAREEIQRRVKLLKQQKEQQLKE---------LQELQEER-----KSLRESAEKLAERYEE-AKDKQEKLMKRVDRVL 620 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH-----HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_pred HHHHH---HHH---HHHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHhhc---chhhhHHHHHHHHHHHhH
Q 001070 820 GLITN---LIN---KDLTASLEKLVKKELAAVGPAIVRTISPSIEKTITSAIVESFQRG---VGDKAVNQLERSVNSRLE 890 (1165)
Q Consensus 820 ~LVS~---~Ln---ktL~~nLEk~LKkeV~sVvPAI~~~t~~avekqlss~l~eslq~~---l~dk~vnqLeK~V~s~Lp 890 (1165)
+++.. .|+ +.+.+-|+ .++.++..+-++|...-.+.=..+..-.-.+.-++. +++++...|...| +..-
T Consensus 621 ~~l~~~~P~LS~AEr~~~~EL~-~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL-~~~~ 698 (717)
T PF10168_consen 621 QLLNSQLPVLSEAEREFKKELE-RMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEIL-KQQG 698 (717)
T ss_pred HHHhccCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHH-HHHH
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHH
Q 001070 891 ATVGRQIQAQFQTSGKHALQDAL 913 (1165)
Q Consensus 891 ~aVaraIq~~vqtsv~qaIqdav 913 (1165)
.-|.+.|+. .+.|...|
T Consensus 699 ~~I~~~v~~------ik~i~~~~ 715 (717)
T PF10168_consen 699 EEIDELVKQ------IKNIKKIV 715 (717)
T ss_pred HHHHHHHHH------HHHHHHhh
No 382
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=34.09 E-value=8.6e+02 Score=28.83 Aligned_cols=68 Identities=18% Similarity=0.313 Sum_probs=38.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 001070 769 PVTKEGRRLEASLGRGIEKAVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEK--LVKKELA 843 (1165)
Q Consensus 769 plsKE~kklE~~L~~~ieK~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk--~LKkeV~ 843 (1165)
.++|-+.||+.| +|.++.++..|.++|.+....+ ...++|+.|.-.=|+. =+++|..+.+. .+|.|+.
T Consensus 256 eit~~LEkI~SR-----EK~lNnqL~~l~q~fr~a~~~l-se~~e~y~q~~~gv~~-rT~~L~eVm~e~E~~KqemE 325 (384)
T KOG0972|consen 256 EITKALEKIASR-----EKSLNNQLASLMQKFRRATDTL-SELREKYKQASVGVSS-RTETLDEVMDEIEQLKQEME 325 (384)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 455555556544 6788888888877666554443 3455666666555554 24445544432 2444554
No 383
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=34.00 E-value=1.2e+03 Score=30.54 Aligned_cols=8 Identities=63% Similarity=0.970 Sum_probs=4.5
Q ss_pred cccccCCC
Q 001070 360 LFQCLPPP 367 (1165)
Q Consensus 360 ~~~c~pp~ 367 (1165)
+.+-||+.
T Consensus 197 l~~~lp~~ 204 (697)
T PF09726_consen 197 LQQALPPE 204 (697)
T ss_pred HHHhCCCc
Confidence 34556665
No 384
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=33.21 E-value=2.7e+02 Score=32.67 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=17.9
Q ss_pred eeecCceEEEeecCCcEEEEeCcc
Q 001070 153 IAVNKHYVCYGLKGGNVRVLNLNT 176 (1165)
Q Consensus 153 IAVn~~yIayG~kdg~IRVwdi~t 176 (1165)
+++++.+|..+..+|.+..+|..+
T Consensus 290 ~~~~~~~vy~~~~~g~l~ald~~t 313 (394)
T PRK11138 290 FAVDGGRIYLVDQNDRVYALDTRG 313 (394)
T ss_pred cEEECCEEEEEcCCCeEEEEECCC
Confidence 456667777777888888888876
No 385
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=32.89 E-value=1.2e+03 Score=29.98 Aligned_cols=11 Identities=36% Similarity=0.377 Sum_probs=5.9
Q ss_pred HHHHHHHHHhh
Q 001070 1081 VLLSLLQQLAC 1091 (1165)
Q Consensus 1081 VLLSLIQQLSs 1091 (1165)
+.|+|+--|+.
T Consensus 560 ~~la~~~al~~ 570 (650)
T TIGR03185 560 LAIALLWGLAK 570 (650)
T ss_pred HHHHHHHHHHH
Confidence 34565555553
No 386
>PRK14157 heat shock protein GrpE; Provisional
Probab=31.81 E-value=2.6e+02 Score=31.66 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=28.8
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 788 AVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVK 839 (1165)
Q Consensus 788 ~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk~LK 839 (1165)
++.++|+++.+|.+.++.. .|.-.+-+++.++| .+-++||+.|.
T Consensus 102 R~~AEfeNyRKR~~rE~e~------~~~~a~~~~~~dLL--pvlDnLeRAl~ 145 (227)
T PRK14157 102 RERAEFINYRNRTQKEQDR------FRQHGIIDVLTALL--PALDDIDRIRE 145 (227)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHh--hhhhhHHHHHh
Confidence 5668899999888876633 23344455555555 45577888875
No 387
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=31.48 E-value=1.3e+03 Score=30.27 Aligned_cols=65 Identities=14% Similarity=0.203 Sum_probs=35.9
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 001070 731 LPSAPAAFSQVIAMQDMLNQLMTMQKELQKQMSNLVTLPVTKEGRRLEASLGRGIEKAVKASTDALWARFHEENARN 807 (1165)
Q Consensus 731 ~~~~~~~~~q~~~mq~~l~ql~~~qke~qkqm~~~v~~plsKE~kklE~~L~~~ieK~lk~eld~L~~R~dEerr~r 807 (1165)
.+..+...-+|++..+-.+-+.--.-.+.++|+. |...|.+.+-+-.=++-|.+.+.+..+-.+.
T Consensus 401 ssl~~e~~QRva~lEkKvqa~~kERDalr~e~ks------------lk~ela~~l~~DeLaEkdE~I~~lm~EGEkL 465 (961)
T KOG4673|consen 401 SSLREEYHQRVATLEKKVQALTKERDALRREQKS------------LKKELAAALLKDELAEKDEIINQLMAEGEKL 465 (961)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH------------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 3444455556666666655555444444555544 5566666666633345566666666555443
No 388
>PRK14628 hypothetical protein; Provisional
Probab=31.00 E-value=64 Score=32.88 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 001070 743 AMQDMLNQLMTMQKELQKQMSN 764 (1165)
Q Consensus 743 ~mq~~l~ql~~~qke~qkqm~~ 764 (1165)
.|.+++.|++.||++||+.|..
T Consensus 16 ~~~~lm~q~~k~qq~mq~k~~e 37 (118)
T PRK14628 16 KQEKLLKDFAKMQEELQKKIQE 37 (118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999988776
No 389
>PRK14155 heat shock protein GrpE; Provisional
Probab=30.85 E-value=2.8e+02 Score=30.98 Aligned_cols=46 Identities=15% Similarity=0.147 Sum_probs=26.6
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 787 KAVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVKK 840 (1165)
Q Consensus 787 K~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk~LKk 840 (1165)
.++.++|+++.+|.+.++... +...+-+++.+.| .+-++||++|..
T Consensus 37 lR~~AefeN~RKR~~kE~e~~------~~~a~~~~~~~LL--pV~DnLerAl~~ 82 (208)
T PRK14155 37 LRYAAEAENTKRRAEREMNDA------RAYAIQKFARDLL--GAADNLGRATAA 82 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHh--hHHhhHHHHHhc
Confidence 355678888888887766432 2233333333433 344777777753
No 390
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=30.72 E-value=7.8e+02 Score=33.41 Aligned_cols=187 Identities=16% Similarity=0.198 Sum_probs=108.5
Q ss_pred EEecccCCCCCCCCCCcccccccccCCCcccccccEeeec--CceEEEeecCCcEEEEeCcch----hhHhhcCCccEEE
Q 001070 117 AYDVDAVEEGREPTQQLEVNPITKYGSDPELLIGRQIAVN--KHYVCYGLKGGNVRVLNLNTA----TRSLLRGHTKIKI 190 (1165)
Q Consensus 117 ~~dVd~~~~ge~~~pqlev~pIt~Y~sd~~~~~GR~IAVn--~~yIayG~kdg~IRVwdi~t~----ir~llrGH~qVri 190 (1165)
.++|=++.-|+++ -++. -.++. |.-.+|| ++-|+--+.+|...|..|.+. .+++++|
T Consensus 94 ~~~vv~~a~~~v~------dr~g-r~s~~----g~~~~VDp~~R~Igl~~yqgl~~vIp~d~~~sht~~s~l~~------ 156 (1096)
T KOG1897|consen 94 SIQVVTRAHGDVS------DRSG-RPSDN----GQILLVDPKGRVIGLHLYQGLFKVIPIDSDESHTGGSLLKA------ 156 (1096)
T ss_pred cceEEEEeccccc------cccc-ccCCC----ceEEEECCCCcEEEEEeecCeEEEEEecccccccCcccccc------
Confidence 4555566666665 1222 44444 7778887 678998999999999888873 3333332
Q ss_pred eecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcC------CC------------CCCC
Q 001070 191 WEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEE------GW------------SLPT 252 (1165)
Q Consensus 191 WD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~------~~------------~~~~ 252 (1165)
.+++--+ .-||.++|+..-..|...++- ..+.+|.+|-+++...+ -| .+|+
T Consensus 157 ------fn~rfde----l~v~Di~fly~~s~pt~~vly-~Ds~~~Hv~~yelnl~~ke~~~~~w~~~v~~~a~~li~VP~ 225 (1096)
T KOG1897|consen 157 ------FNVRFDE----LNVYDIKFLYGCSDPTLAVLY-KDSDGRHVKTYELNLRDKEFVKGPWSNNVDNGASMLIPVPS 225 (1096)
T ss_pred ------cccccCc----ceEEEEEEEcCCCCCceEEEE-EcCCCcEEEEEEeccchhhccccccccccccCCceeeecCC
Confidence 2222222 358888888766666643333 46688888888887652 13 1121
Q ss_pred CCC-CcceEEEEeccCCC------CC--ccccccEEEEEeecCCcEEEEeccCCCc--EEEEEeecCCCccccccccccc
Q 001070 253 HAE-SWKCTQTLDLKSSA------KP--RVEEAFFNQVVVLSQAGLLLFANAKKNA--IYSVHLGYGNNSAATRIDYIAE 321 (1165)
Q Consensus 253 ~~~-~w~C~QTLe~~~s~------~~--~~~~aff~sV~~~p~a~~ilLan~~r~a--IYalhl~~g~~~~~~r~dyiae 321 (1165)
.-. ...|-.-+-.-.+. .+ .-..-+...-.++.++...||+|..... +|.-|.+........+.+|+-|
T Consensus 226 ~~gGvlV~ge~~I~Y~~~~~~~ai~p~~~~~~t~~~~~~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge 305 (1096)
T KOG1897|consen 226 PIGGVLVIGEEFIVYMSGDNFVAIAPLTAEQSTIVCYGRVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGE 305 (1096)
T ss_pred CCceEEEEeeeEEEEeeCCceeEecccccCCceEEEcccccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCC
Confidence 111 12222222110000 00 0011233344588899999999987653 4445555555544579999999
Q ss_pred cccccceeee
Q 001070 322 FTVTMPVLSF 331 (1165)
Q Consensus 322 F~v~~PILSf 331 (1165)
|.++.-|-.+
T Consensus 306 ~siassi~~L 315 (1096)
T KOG1897|consen 306 TSIASSINYL 315 (1096)
T ss_pred cchhhhhhcc
Confidence 9999887655
No 391
>PRK14140 heat shock protein GrpE; Provisional
Probab=30.66 E-value=4.7e+02 Score=28.87 Aligned_cols=54 Identities=17% Similarity=0.248 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 773 EGRRLEASLGRGIEKAVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVK 839 (1165)
Q Consensus 773 E~kklE~~L~~~ieK~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk~LK 839 (1165)
|++.++..+ .+..++|+++.+|.+.++... +.-.+-+++.++| .+-++||++|+
T Consensus 52 ei~elkd~~-----lR~~Ae~eN~rkR~~rE~~~~------~~~a~~~~~~~LL--pvlDnLerAl~ 105 (191)
T PRK14140 52 KLDELEERY-----LRLQADFENYKRRIQKENEAA------EKYRAQSLASDLL--PALDNFERALQ 105 (191)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH--HHHHHHHHHHh
Confidence 344455544 355578888888877766332 2333334444444 35577888776
No 392
>PRK14148 heat shock protein GrpE; Provisional
Probab=30.60 E-value=4.1e+02 Score=29.43 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=19.6
Q ss_pred HHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 789 VKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVK 839 (1165)
Q Consensus 789 lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk~LK 839 (1165)
+.++|+++.+|.+.++.. .+...+-+++.+.| .+-++||++|.
T Consensus 66 ~~Ae~eN~rKR~~rE~e~------~~~~a~~~~~~~LL--pV~DnlerAl~ 108 (195)
T PRK14148 66 AKAEMENIRKRAERDVSN------ARKFGIEKFAKELL--PVIDSIEQALK 108 (195)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHh--hHHhHHHHHHh
Confidence 344555555555444322 22223333333333 34466776665
No 393
>PF12868 DUF3824: Domain of unknwon function (DUF3824); InterPro: IPR024436 This repeating domain is proline-rich but its function is unknown.
Probab=30.56 E-value=1.1e+02 Score=31.88 Aligned_cols=13 Identities=38% Similarity=0.851 Sum_probs=7.3
Q ss_pred ccccCCCCCCCCC
Q 001070 20 RNWFPPYPPPSSS 32 (1165)
Q Consensus 20 ~~~~~~~~~~~~~ 32 (1165)
.|.|+|+|...+.
T Consensus 76 ~n~~ppPP~~~p~ 88 (137)
T PF12868_consen 76 SNYFPPPPGSTPY 88 (137)
T ss_pred cccCCCCCCCCCC
Confidence 4666666655444
No 394
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=30.50 E-value=9.1e+02 Score=28.61 Aligned_cols=81 Identities=16% Similarity=0.177 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------cccchhhhHHHHHHHH-----H-HHHHHHHHHhH---HHHHH
Q 001070 736 AAFSQVIAMQDMLNQLMTMQKELQKQMSNL--------VTLPVTKEGRRLEASL-----G-RGIEKAVKAST---DALWA 798 (1165)
Q Consensus 736 ~~~~q~~~mq~~l~ql~~~qke~qkqm~~~--------v~~plsKE~kklE~~L-----~-~~ieK~lk~el---d~L~~ 798 (1165)
..-.+|..+.+.|++|-.|.++=.+=+..+ ++.-+-.+.+++|..- . +.|+..|.++| |.+-.
T Consensus 189 ~~~~~i~~Lr~~l~~l~~l~~eR~~~~~~Lk~k~~~DDI~~~ll~~~~~~~~~~~~~~i~~~~fe~lf~~eL~kf~~~~~ 268 (353)
T cd09236 189 ELERHVRALRVSLEELDRLESRRRRKVERARTKARADDIRPEILREAARLEREYPATEVAPAHFEDLFDKRLAKYDKDLD 268 (353)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHhhhcccccccccHHHHHHHHHHHHHHhhHHHH
Confidence 445788888889999988887755533322 1123344444444431 1 23454444444 33333
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001070 799 RFHEENARNEKLLRDRTQQITGLITN 824 (1165)
Q Consensus 799 R~dEerr~rEaa~~~RQ~qLL~LVS~ 824 (1165)
++++ ...+|+.|++=|..
T Consensus 269 ~l~~--------~~~~Q~~ll~~i~~ 286 (353)
T cd09236 269 AVSE--------EAQEQEEILQQIEV 286 (353)
T ss_pred HHHH--------HHHHHHHHHHHHHH
Confidence 3333 34556677775554
No 395
>PRK14141 heat shock protein GrpE; Provisional
Probab=30.31 E-value=5.9e+02 Score=28.53 Aligned_cols=45 Identities=18% Similarity=0.360 Sum_probs=28.3
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 788 AVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVKK 840 (1165)
Q Consensus 788 ~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk~LKk 840 (1165)
++.++|+++.+|.+.++.. .|.-.+-+++.+.| .+-++||++|..
T Consensus 56 R~~Ae~eN~RKR~~kE~e~------~~~~a~~~~~~dLL--pViDnLerAl~~ 100 (209)
T PRK14141 56 RLAAEMENLRKRTQRDVAD------ARAYGIAGFARDML--SVSDNLRRALDA 100 (209)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHh--hhHhHHHHHHhc
Confidence 5567888888888766533 23334444455544 455888888753
No 396
>PHA01750 hypothetical protein
Probab=29.98 E-value=1.9e+02 Score=27.08 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 001070 776 RLEASLGRGIEKAVKASTDALWARFHEENARNE 808 (1165)
Q Consensus 776 klE~~L~~~ieK~lk~eld~L~~R~dEerr~rE 808 (1165)
|+...|...++.-+++|+|+|...+++-+.++|
T Consensus 27 KIKq~lkdAvkeIV~~ELdNL~~ei~~~kikqD 59 (75)
T PHA01750 27 KIKQALKDAVKEIVNSELDNLKTEIEELKIKQD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 577788888888999999999999998875555
No 397
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=29.84 E-value=91 Score=40.63 Aligned_cols=7 Identities=0% Similarity=-0.249 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 001070 934 EQVDATF 940 (1165)
Q Consensus 934 qQV~~~F 940 (1165)
+.|...+
T Consensus 735 ~~l~~~~ 741 (833)
T KOG1922|consen 735 KLLISEE 741 (833)
T ss_pred HHHHHHH
Confidence 3333333
No 398
>PRK15362 pathogenicity island 2 effector protein SseC; Provisional
Probab=29.75 E-value=1.2e+03 Score=29.14 Aligned_cols=12 Identities=50% Similarity=0.753 Sum_probs=5.8
Q ss_pred CcccccCCCCCC
Q 001070 446 TNVVCVASPPLP 457 (1165)
Q Consensus 446 ~~~~~~~s~p~~ 457 (1165)
.+++|.+|-+||
T Consensus 20 ~~~~~~~s~~l~ 31 (473)
T PRK15362 20 SNVSCVSSGSLG 31 (473)
T ss_pred cccccccCCCCC
Confidence 455555554433
No 399
>PRK14156 heat shock protein GrpE; Provisional
Probab=29.72 E-value=6.2e+02 Score=27.65 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=25.6
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 788 AVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVK 839 (1165)
Q Consensus 788 ~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk~LK 839 (1165)
++.++|+++-+|.+.++... +....-+++.+.| .+-++||++|.
T Consensus 52 R~~AEfeN~rKR~~rE~e~~------~~~a~~~~~~~LL--pVlDnLerAl~ 95 (177)
T PRK14156 52 RAHAEMQNIQRRANEERQQL------QRYRSQDLAKAIL--PSLDNLERALA 95 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHh--hHHhHHHHHHh
Confidence 45577777777777665332 2333334444444 45578888875
No 400
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=29.70 E-value=7.5e+02 Score=26.77 Aligned_cols=92 Identities=15% Similarity=0.160 Sum_probs=47.6
Q ss_pred EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccC
Q 001070 188 IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKS 267 (1165)
Q Consensus 188 VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~ 267 (1165)
|..||..++. ...+.-. + ..+++|. . ++++++|+. ...+.++|..++ +-...++...
T Consensus 24 i~~~~~~~~~-~~~~~~~-~--~~G~~~~-~---~~g~l~v~~---~~~~~~~d~~~g------------~~~~~~~~~~ 80 (246)
T PF08450_consen 24 IYRVDPDTGE-VEVIDLP-G--PNGMAFD-R---PDGRLYVAD---SGGIAVVDPDTG------------KVTVLADLPD 80 (246)
T ss_dssp EEEEETTTTE-EEEEESS-S--EEEEEEE-C---TTSEEEEEE---TTCEEEEETTTT------------EEEEEEEEET
T ss_pred EEEEECCCCe-EEEEecC-C--CceEEEE-c---cCCEEEEEE---cCceEEEecCCC------------cEEEEeeccC
Confidence 4455555544 2223211 2 6677773 2 235656653 244455576443 3333444321
Q ss_pred CCCCccccccEEEEEeecCCcEEEEeccCC--------CcEEEEEee
Q 001070 268 SAKPRVEEAFFNQVVVLSQAGLLLFANAKK--------NAIYSVHLG 306 (1165)
Q Consensus 268 s~~~~~~~aff~sV~~~p~a~~ilLan~~r--------~aIYalhl~ 306 (1165)
.. ....++|-++++|+++ |.+++... ..||.+..+
T Consensus 81 ~~---~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~ 123 (246)
T PF08450_consen 81 GG---VPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD 123 (246)
T ss_dssp TC---SCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT
T ss_pred CC---cccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC
Confidence 11 1357899999999998 55565544 357777665
No 401
>PRK14154 heat shock protein GrpE; Provisional
Probab=29.57 E-value=2.5e+02 Score=31.38 Aligned_cols=45 Identities=27% Similarity=0.235 Sum_probs=29.4
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 787 KAVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVK 839 (1165)
Q Consensus 787 K~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk~LK 839 (1165)
.++.++|+++.+|.+.++.. .+...+-+++.++| .+-++||++|.
T Consensus 76 lRl~ADfeNyRKR~~kE~e~------~~~~a~e~~~~~LL--pVlDnLeRAL~ 120 (208)
T PRK14154 76 LRAQAEMDNLRKRIEREKAD------IIKFGSKQLITDLL--PVADSLIHGLE 120 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHh--hHHhHHHHHHh
Confidence 35568999998888876643 23344444555555 46688888875
No 402
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=29.40 E-value=1.7e+03 Score=30.84 Aligned_cols=79 Identities=25% Similarity=0.324 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHH-----hhhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001070 747 MLNQLMTMQKELQKQ-----MSNLVTLPVTKEGRRLEASLGRGIEKAVKASTDALWARFHEENARNEKLLRDRTQQITGL 821 (1165)
Q Consensus 747 ~l~ql~~~qke~qkq-----m~~~v~~plsKE~kklE~~L~~~ieK~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~L 821 (1165)
+|+-|+--|..+.|| +.+.=.-|-.||+-+|-..|--+|-+ ++.+|..|.+-+----...++..+.|.+.|+.-
T Consensus 1029 ~L~~L~qCqdALeKqnIa~AL~ALn~IPSdKEms~Is~eLReQIq~-~KQ~LesLQRAV~TPVvtd~eKvr~rYe~LI~~ 1107 (1439)
T PF12252_consen 1029 VLQALTQCQDALEKQNIAGALQALNNIPSDKEMSKISSELREQIQS-VKQDLESLQRAVVTPVVTDAEKVRVRYETLITD 1107 (1439)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCchhhhhhhhHHHHHHHHH-HHHHHHHHHHhhcccccccHHHHHHHHHHHHHH
Confidence 455566667777774 44455556677766633333333332 222333332211111122456667788888887
Q ss_pred HHHHH
Q 001070 822 ITNLI 826 (1165)
Q Consensus 822 VS~~L 826 (1165)
|+.-|
T Consensus 1108 iTKrI 1112 (1439)
T PF12252_consen 1108 ITKRI 1112 (1439)
T ss_pred HHHHH
Confidence 76644
No 403
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=29.17 E-value=5.7e+02 Score=29.66 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=37.0
Q ss_pred CCCcceEEEEeccCC-------CCCccccccEEEEEeecCCcEEEEeccCCCcEEEEEee
Q 001070 254 AESWKCTQTLDLKSS-------AKPRVEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLG 306 (1165)
Q Consensus 254 ~~~w~C~QTLe~~~s-------~~~~~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~ 306 (1165)
.++++|+-.+.+..- .......++.|-+|++|.++-++|.--.=+-+|-|++.
T Consensus 202 p~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~ 261 (264)
T PF05096_consen 202 PETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLV 261 (264)
T ss_dssp TTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred CCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence 355688888876331 11112368999999999999999999999999999885
No 404
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=28.89 E-value=1.8e+02 Score=32.95 Aligned_cols=94 Identities=10% Similarity=0.235 Sum_probs=52.3
Q ss_pred cCCccEEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCC--ceEEEeEccCcCCCCCCCCCCCcceE
Q 001070 183 RGHTKIKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLN--REVKLWASASEEGWSLPTHAESWKCT 260 (1165)
Q Consensus 183 rGH~qVriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGsln--rtIKLW~~a~~~~~~~~~~~~~w~C~ 260 (1165)
.|+..=-+||..++. +.-+....--.--+=+|| +|++.|++||..+ +.|++++.... ...|.
T Consensus 43 d~~a~s~~yD~~tn~-~rpl~v~td~FCSgg~~L-----~dG~ll~tGG~~~G~~~ir~~~p~~~----------~~~~~ 106 (243)
T PF07250_consen 43 DGPAHSVEYDPNTNT-FRPLTVQTDTFCSGGAFL-----PDGRLLQTGGDNDGNKAIRIFTPCTS----------DGTCD 106 (243)
T ss_pred CceEEEEEEecCCCc-EEeccCCCCCcccCcCCC-----CCCCEEEeCCCCccccceEEEecCCC----------CCCCC
Confidence 333335688887764 111211111111222343 5567799999866 66877774331 11221
Q ss_pred EEEeccCCCCCccccccEEEEEeecCCcEEEEeccC
Q 001070 261 QTLDLKSSAKPRVEEAFFNQVVVLSQAGLLLFANAK 296 (1165)
Q Consensus 261 QTLe~~~s~~~~~~~aff~sV~~~p~a~~ilLan~~ 296 (1165)
-.+....- ...-.|-++...||++.|+++-..
T Consensus 107 -w~e~~~~m---~~~RWYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 107 -WTESPNDM---QSGRWYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred -ceECcccc---cCCCccccceECCCCCEEEEeCcC
Confidence 11211111 245789999999999999999888
No 405
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=28.86 E-value=26 Score=45.71 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=31.6
Q ss_pred eecCceEEEeecCCcEEEEeCcc-hhhHhhcCCcc
Q 001070 154 AVNKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHTK 187 (1165)
Q Consensus 154 AVn~~yIayG~kdg~IRVwdi~t-~ir~llrGH~q 187 (1165)
-=|++|+|.|--.|.|-+-|.++ ..-+.|.-|+.
T Consensus 184 R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 184 RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred EecCcEEEeecccceEEeecCCcCceeeeeecccc
Confidence 34899999999999999999999 88899999998
No 406
>PF10737 GerPC: Spore germination protein GerPC; InterPro: IPR019673 GerPC is required for the formation of functionally normal spores. The gerP locus encodes a number of proteins which are thought to be involved in the establishment of normal spore coat structure and/or permeability, which allows the access of germinants to their receptor [].
Probab=28.73 E-value=3.7e+02 Score=29.43 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhhhhhhHHHHHHHHHHhHhhc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 877 AVNQLERSVNSRLEATVGRQIQAQFQTSGKHALQDALKSSVEASV-----IPAFEKSCKAMFEQVDATFQKGMVEHTTAT 951 (1165)
Q Consensus 877 ~vnqLeK~V~s~Lp~aVaraIq~~vqtsv~qaIqdavr~af~stL-----IPAFE~scq~MFqQV~~~F~rGm~E~~~ql 951 (1165)
.+.++|+.....|-++-.+.|. .++++-|.+.++-.+++.= -|..+......+++|..++.+++..+++++
T Consensus 99 ~l~~~e~~~~~~ld~~y~~~Ii----eDIrKQl~~RI~~YlqQ~~~~~~~~~~~~~~~~~I~~kvK~DI~~ai~~FL~hL 174 (176)
T PF10737_consen 99 RLEQLEQQYNVPLDDSYRSFII----EDIRKQLPQRIQFYLQQVQPNEQMPPNEEAWEQQIIQKVKRDIDKAIDHFLQHL 174 (176)
T ss_pred HHHHHHHHhCCCCcHHHHHHHH----HHHHHHhHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3456666666666666555554 4777788888777766532 244556678889999999999998877653
No 407
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=28.69 E-value=97 Score=29.82 Aligned_cols=99 Identities=16% Similarity=0.224 Sum_probs=61.8
Q ss_pred CHHHHHHHhhccCcccccccCCCCcchhHHHHHHHHHhhhcc----cChHHHHHHHHHHHHH----cCCCCchhHHhHHH
Q 001070 1053 DVSIVSWLCSQVDMHGLLSMVPLPLSQGVLLSLLQQLACDIN----KDTARKLAWLTDVAAA----INPADPMIAVHARP 1124 (1165)
Q Consensus 1053 DlsLV~~LcsrvDP~~Lfsl~PlpLSQgVLLSLIQQLSsDL~----tdt~lKL~WLEeal~a----LDpsDP~IrehvPk 1124 (1165)
|..++..++.+.+++.|-...- .|+..-+.-|++-|+.-+. .+.+.=+.||...+.. |-..++..+..+..
T Consensus 2 d~~ll~~vl~~~~~~~I~~tv~-~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~~l~~~~~~~~~~L~~ 80 (110)
T PF04003_consen 2 DEELLLEVLERIPPSDIENTVR-SLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGSYLSSSSPELRPVLRS 80 (110)
T ss_pred HHHHHHHHHhhCCHHHHHHHHH-hCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4557777777777766533111 3445567778888888554 2568899999998875 33335677777777
Q ss_pred HHHHHHHHHHhhhcCCCCccccchhHHHHHH
Q 001070 1125 IFEQVYQRLHHQRSSPTISGAELSSIRLLIH 1155 (1165)
Q Consensus 1125 IL~~L~qrL~~~~slp~~s~~d~~~lRLl~h 1155 (1165)
+...+.++++.+..+-+ .....|+++..
T Consensus 81 L~~~l~~~~~~l~~l~~---~n~~~L~~l~~ 108 (110)
T PF04003_consen 81 LQKILRERLQNLSKLLD---LNLGRLDYLLS 108 (110)
T ss_pred HHHHHHHHHHHHHHHHH---HhHHHHHHHHH
Confidence 77777777665443322 11245555543
No 408
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=28.35 E-value=5.4e+02 Score=32.48 Aligned_cols=77 Identities=25% Similarity=0.343 Sum_probs=55.9
Q ss_pred ChhhHHHHHHH---HHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHHHHHHHHHH--------hHHHHHHHHHH
Q 001070 734 APAAFSQVIAM---QDMLNQLMTMQKELQKQMSNLVTLPVTKEGRRLEASLGRGIEKAVKA--------STDALWARFHE 802 (1165)
Q Consensus 734 ~~~~~~q~~~m---q~~l~ql~~~qke~qkqm~~~v~~plsKE~kklE~~L~~~ieK~lk~--------eld~L~~R~dE 802 (1165)
.+..|+++.-- ...|..||.+...+-++|+.|+. --..|++||+.+-..+|++.+++ +++.+.+|.-|
T Consensus 89 ~ee~Fa~vyH~LiHSpaletLL~LE~~Ya~~vseli~-~Rd~el~kl~~rq~~Eme~a~q~Lg~~ltd~dIN~laaqH~E 167 (510)
T PF10154_consen 89 DEEDFAQVYHQLIHSPALETLLQLEHNYAKAVSELIQ-ARDQELKKLQERQTEEMEKAMQKLGISLTDRDINHLAAQHFE 167 (510)
T ss_pred hhHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Confidence 34445555421 23788899999999999999874 45788999999999999999887 57778777666
Q ss_pred HHHhHHHHH
Q 001070 803 ENARNEKLL 811 (1165)
Q Consensus 803 err~rEaa~ 811 (1165)
+++.-++.-
T Consensus 168 e~q~ie~kw 176 (510)
T PF10154_consen 168 EQQRIESKW 176 (510)
T ss_pred HHHHHHHHH
Confidence 555544333
No 409
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=27.88 E-value=1.3e+03 Score=29.08 Aligned_cols=26 Identities=12% Similarity=0.195 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001070 966 LRESVNSVSSMAQTLSGEFVDGQRKLF 992 (1165)
Q Consensus 966 L~etIssmaa~q~~LqsEll~lQrQL~ 992 (1165)
|.+.+..|... ..|...+.++.+.|.
T Consensus 210 L~~vl~AL~~l-g~L~~~l~~~~~~Ll 235 (593)
T PF06248_consen 210 LQDVLQALEIL-GILDYKLKKFSKFLL 235 (593)
T ss_pred HHHHHHHHHHh-CchhHHHHHHHHHHH
Confidence 77777777632 344444555555443
No 410
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=27.75 E-value=1.5e+03 Score=29.54 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=35.9
Q ss_pred HHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-HhhhhhHhh
Q 001070 790 KASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKL---VKKELA-AVGPAIVRT 852 (1165)
Q Consensus 790 k~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk~---LKkeV~-sVvPAI~~~ 852 (1165)
-+++.+-|+||++.+...+ ++|++|-.||.. |.+...-+++. +..-++ .|+|+-..+
T Consensus 388 ~~~Lq~K~q~I~~frqlv~----e~QeqIr~LiK~--Nsaakt~L~q~~~E~~~~~~~kl~P~~~~V 448 (632)
T PF14817_consen 388 LRSLQAKWQRILDFRQLVS----EKQEQIRALIKG--NSAAKTQLEQSPAEAQEFVQRKLVPQFEAV 448 (632)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh--hHHHHHHHHhChHHHHHHHhcccCCcHHHH
Confidence 3677788888988776654 788889888887 44555555442 222222 566765433
No 411
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=27.64 E-value=3.5e+02 Score=25.73 Aligned_cols=54 Identities=22% Similarity=0.376 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001070 738 FSQVIAMQDMLNQLMTMQKELQKQMSNLVTLPVTKEGRRLEASLGRGIEKAVKASTDALWARFHEE 803 (1165)
Q Consensus 738 ~~q~~~mq~~l~ql~~~qke~qkqm~~~v~~plsKE~kklE~~L~~~ieK~lk~eld~L~~R~dEe 803 (1165)
-.=|.++|+=+.|+-.-+.+++-+++. |..+++.+..+.|..+++.+-.+|+.-
T Consensus 16 s~vl~~LqDE~~hm~~e~~~L~~~~~~------------~d~s~~~~~R~~L~~~l~~lv~~mE~K 69 (79)
T PF06657_consen 16 SEVLKALQDEFGHMKMEHQELQDEYKQ------------MDPSLGRRKRRDLEQELEELVKRMEAK 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh------------cccccChHHHHHHHHHHHHHHHHHHHH
Confidence 344567888888888888877665555 555666666777777777777777653
No 412
>PRK13616 lipoprotein LpqB; Provisional
Probab=27.64 E-value=7.6e+02 Score=31.55 Aligned_cols=138 Identities=13% Similarity=0.170 Sum_probs=74.0
Q ss_pred EeeecCceEEEee------cC--CcEEEEeCcchhhHhhcCCcc---------------------EEEeecC-CCceeEE
Q 001070 152 QIAVNKHYVCYGL------KG--GNVRVLNLNTATRSLLRGHTK---------------------IKIWEDS-KVAPLII 201 (1165)
Q Consensus 152 ~IAVn~~yIayG~------kd--g~IRVwdi~t~ir~llrGH~q---------------------VriWD~~-~g~pl~~ 201 (1165)
.|+-||++|+|-. .| .+|.|++.....+.++.|..- +++.+.. ++. +.+
T Consensus 356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gq-l~~ 434 (591)
T PRK13616 356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQ-LAR 434 (591)
T ss_pred eECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCCCce-EEE
Confidence 4777899998876 23 377788876655667777643 1222111 111 111
Q ss_pred ecCCC-------CCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEeccCCCCCccc
Q 001070 202 LKPHG-------GQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLKSSAKPRVE 274 (1165)
Q Consensus 202 lephd-------G~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~~s~~~~~~ 274 (1165)
+.-.. +..|.++.| +|||.- ..+|+. ..|.+--..-. .+++ -+++...++....
T Consensus 435 ~~vd~ge~~~~~~g~Issl~w--SpDG~R-iA~i~~----g~v~Va~Vvr~------~~G~-~~l~~~~~l~~~l----- 495 (591)
T PRK13616 435 TPVDASAVASRVPGPISELQL--SRDGVR-AAMIIG----GKVYLAVVEQT------EDGQ-YALTNPREVGPGL----- 495 (591)
T ss_pred EeccCchhhhccCCCcCeEEE--CCCCCE-EEEEEC----CEEEEEEEEeC------CCCc-eeecccEEeeccc-----
Confidence 11100 236999999 677754 323332 23333222111 1111 2343333332221
Q ss_pred cccEEEEEeecCCcEEEEeccCCCcEEEEEeecCCC
Q 001070 275 EAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGYGNN 310 (1165)
Q Consensus 275 ~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~g~~ 310 (1165)
.+-..++.-..++.++++++.....+|.+.++ |+.
T Consensus 496 ~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vD-G~~ 530 (591)
T PRK13616 496 GDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLD-GSN 530 (591)
T ss_pred CCccccceEecCCEEEEEecCCCCceEEEecC-Ccc
Confidence 12224667778888998888777889999999 444
No 413
>PRK02888 nitrous-oxide reductase; Validated
Probab=27.63 E-value=5.4e+02 Score=33.25 Aligned_cols=162 Identities=16% Similarity=0.146 Sum_probs=89.1
Q ss_pred Cceee-cCCceEEecccCCCCCCCCCCcccccccccCCCcccccccEeeecCceEEEeec-CCcEEEEeCcchhhHhhcC
Q 001070 107 YGKRV-FGDYVAYDVDAVEEGREPTQQLEVNPITKYGSDPELLIGRQIAVNKHYVCYGLK-GGNVRVLNLNTATRSLLRG 184 (1165)
Q Consensus 107 ~Gr~l-~g~~~~~dVd~~~~ge~~~pqlev~pIt~Y~sd~~~~~GR~IAVn~~yIayG~k-dg~IRVwdi~t~ir~llrG 184 (1165)
.|++. .+.+.|-=||.+.-..+ ...++.|---+..+.|=-++-||+||+..-+ +..+-|+|+++ ++.+|.|
T Consensus 287 dGK~~~V~gn~V~VID~~t~~~~------~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k-~k~~~~~ 359 (635)
T PRK02888 287 AGKFKTIGGSKVPVVDGRKAANA------GSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK-LDDLFDG 359 (635)
T ss_pred CCCEEEECCCEEEEEECCccccC------CcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChh-hhhhhhc
Confidence 56655 44444445555441100 1256788888888889889999999877555 89999999976 3344544
Q ss_pred CccEEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEe
Q 001070 185 HTKIKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLD 264 (1165)
Q Consensus 185 H~qVriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe 264 (1165)
- + |.++- .+-++.=|.-....+| .++| . ..|+=-+|..|--|+++..-.. + .+.+.|.-++.+.
T Consensus 360 ~--~---~~~~~---vvaevevGlGPLHTaF--Dg~G---~-aytslf~dsqv~kwn~~~a~~~-~-~g~~~~~v~~k~d 423 (635)
T PRK02888 360 K--I---KPRDA---VVAEPELGLGPLHTAF--DGRG---N-AYTTLFLDSQIVKWNIEAAIRA-Y-KGEKVDPIVQKLD 423 (635)
T ss_pred c--C---Cccce---EEEeeccCCCcceEEE--CCCC---C-EEEeEeecceeEEEehHHHHHH-h-ccccCCcceeccc
Confidence 3 1 22221 1111222444555666 2222 2 5566777888888999763110 0 1112466666665
Q ss_pred ccCCCCCccccccEEEE--EeecCCcEEEEeccC
Q 001070 265 LKSSAKPRVEEAFFNQV--VVLSQAGLLLFANAK 296 (1165)
Q Consensus 265 ~~~s~~~~~~~aff~sV--~~~p~a~~ilLan~~ 296 (1165)
.+-.. +| .+-+. -..|++.||+..|--
T Consensus 424 V~y~p---gh--~~~~~g~t~~~dgk~l~~~nk~ 452 (635)
T PRK02888 424 VHYQP---GH--NHASMGETKEADGKWLVSLNKF 452 (635)
T ss_pred CCCcc---ce--eeecCCCcCCCCCCEEEEcccc
Confidence 42211 11 00000 136888888877743
No 414
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=27.59 E-value=9.1e+02 Score=27.08 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001070 964 LVLRESVNSVSSMAQTLSG 982 (1165)
Q Consensus 964 ~~L~etIssmaa~q~~Lqs 982 (1165)
..|=+.+.+|...-++|+.
T Consensus 199 ~~lC~~l~~L~~~E~~L~~ 217 (229)
T PF11101_consen 199 QALCDSLQQLDQQEQQLQQ 217 (229)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 415
>PRK14151 heat shock protein GrpE; Provisional
Probab=27.52 E-value=5.9e+02 Score=27.69 Aligned_cols=46 Identities=13% Similarity=0.180 Sum_probs=28.4
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 787 KAVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVKK 840 (1165)
Q Consensus 787 K~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk~LKk 840 (1165)
.++.++|+++.+|.+.|+... +.-.+-+++.+.| .+-++||++|..
T Consensus 44 lR~~Ae~eN~rkR~~kE~e~~------~~~a~~~~~~~LL--pv~DnlerAl~~ 89 (176)
T PRK14151 44 LRAAADLQNVRRRAEQDVEKA------HKFALEKFAGDLL--PVVDSLERGLEL 89 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHh--hHHhHHHHHHhc
Confidence 355678888888877766332 3334444445554 456888888753
No 416
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=27.26 E-value=1.4e+03 Score=29.15 Aligned_cols=13 Identities=38% Similarity=0.452 Sum_probs=5.3
Q ss_pred chhhhHHHHHHHH
Q 001070 769 PVTKEGRRLEASL 781 (1165)
Q Consensus 769 plsKE~kklE~~L 781 (1165)
...|+++|+|+.+
T Consensus 363 ~~~~~i~~~e~~v 375 (533)
T COG1283 363 KKVKEIRKLEDAV 375 (533)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 417
>PF09903 DUF2130: Uncharacterized protein conserved in bacteria (DUF2130); InterPro: IPR019219 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=27.21 E-value=5.2e+02 Score=29.79 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001070 777 LEASLGRGIEKAVKASTDALWARFHEENARNEKLLRDRTQQITGLITN 824 (1165)
Q Consensus 777 lE~~L~~~ieK~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~ 824 (1165)
.|..+...+++ +..+++.+...|+.+.+.-+++-..|+.++-+++.+
T Consensus 192 fe~~~~~~~~~-~~~~~~~~~~~l~ke~~~i~k~~~k~ek~~e~l~~~ 238 (267)
T PF09903_consen 192 FEEEFRQFIEA-IVENFEDMSKDLDKEIKAIDKAWKKREKQIEKLLSS 238 (267)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554 446889999999999999999999999999998844
No 418
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=27.19 E-value=1.5e+03 Score=29.39 Aligned_cols=187 Identities=14% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHhhhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 759 QKQMSNLVTLPVTKEGRRLEASLGRGIEKAVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLV 838 (1165)
Q Consensus 759 qkqm~~~v~~plsKE~kklE~~L~~~ieK~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk~L 838 (1165)
||+|.+-| |-|+-.+-.|+.-+..+ =|..+.|.-.-. ++|+ +.+-|...+|+.|
T Consensus 283 qqvlvAt~---------rceEIanE~~e~fitne---~~~e~~e~l~g~-------------l~s~-l~~kL~~i~e~~l 336 (772)
T KOG2203|consen 283 QQVLVATV---------RCEEIANEKLEEFITNE---KWLELIEALQGN-------------LVSG-LGKKLSSILEECL 336 (772)
T ss_pred hhhHHhhh---------hHHHHHHHHHHHhhhhh---hHHHHHhhhcCC-------------Cccc-hhHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhHHHHHHHHHH--hhhhhhhHHHHHH---H
Q 001070 839 KKELAAVGPAIVRTISPSIEKTITSAIVESFQRGVGDKAVNQLERSVNSRLEATVGRQIQA--QFQTSGKHALQDA---L 913 (1165)
Q Consensus 839 KkeV~sVvPAI~~~t~~avekqlss~l~eslq~~l~dk~vnqLeK~V~s~Lp~aVaraIq~--~vqtsv~qaIqda---v 913 (1165)
.+-..=.--..+-+...=..+|..++...+.-.+. .++++|-+.+-+.+-.++..++.+ .|..++.--.+.. +
T Consensus 337 -seYD~qAs~y~~~V~~~KrqqL~~kl~s~v~~~fq-~~L~~L~~~lle~fk~~~~~~~~~~~gF~es~~~~~~~~~~~f 414 (772)
T KOG2203|consen 337 -SEYDEQASRYDEGVYSEKRQQLNEKLLSHVYPTFQ-DVLGHLREGLLESFKLAFEKALKATEGFSESVADGKQSCEKKF 414 (772)
T ss_pred -HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Q ss_pred HHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhcCchHHHHHHHHHHHH
Q 001070 914 KSSVEASVIPAFEKSCKAMFEQVDATFQKGMVEHTT-ATLQHFESTHSPLALVLRESVNSV 973 (1165)
Q Consensus 914 r~af~stLIPAFE~scq~MFqQV~~~F~rGm~E~~~-qlQqq~dSaKtsLv~~L~etIssm 973 (1165)
.+..+...++...=.....-.++.++++..+..... ++.....--++.++-.|.+-|..+
T Consensus 415 de~~E~~~~~~~~wd~ski~~Kls~diea~i~~lr~akLke~~~~~e~~l~~else~Ve~l 475 (772)
T KOG2203|consen 415 DEECETAKIEQALWDTSKIREKLSRDIEAHISSLRTAKLKEKTGLYEKKLVPELSEPVEAL 475 (772)
T ss_pred HhhhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHhhhHHHHHH
No 419
>PRK14144 heat shock protein GrpE; Provisional
Probab=26.76 E-value=5.9e+02 Score=28.36 Aligned_cols=45 Identities=22% Similarity=0.295 Sum_probs=29.8
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 788 AVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVKK 840 (1165)
Q Consensus 788 ~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk~LKk 840 (1165)
++.++|+++.+|.+.++.. .|...+-+++.+.| .+-+|||.+|..
T Consensus 70 R~~AefeN~RKR~~kE~e~------~~~~a~~~~~~~LL--pV~DnLerAl~~ 114 (199)
T PRK14144 70 RALAELENVRRRMEREVAN------AHKYGVEKLISALL--PVVDSLEQALQL 114 (199)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHh--hHHhHHHHHHHc
Confidence 4567888888888776533 34445555555555 566888888753
No 420
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=26.52 E-value=42 Score=37.83 Aligned_cols=21 Identities=24% Similarity=0.588 Sum_probs=18.5
Q ss_pred cCceEEEeecCCcEEEEeCcc
Q 001070 156 NKHYVCYGLKGGNVRVLNLNT 176 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t 176 (1165)
++.|.|+|+.||.||-|++.-
T Consensus 113 ~~~~~c~~~~dg~ir~~n~~p 133 (238)
T KOG2444|consen 113 DSSLGCVGAQDGRIRACNIKP 133 (238)
T ss_pred ccceeEEeccCCceeeecccc
Confidence 355899999999999999985
No 421
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=26.47 E-value=60 Score=33.01 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=22.2
Q ss_pred HHHHHHhhccCcHHHHHHHHHhcCCHHHHHH
Q 001070 1029 TKELSRLVSDRKYEEAFTTALQRSDVSIVSW 1059 (1165)
Q Consensus 1029 ~~eI~qLI~eGqyEEAF~kALqSsDlsLV~~ 1059 (1165)
+..+..||+.|+|++|+...+...-..|.-|
T Consensus 44 lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~ 74 (116)
T PF09477_consen 44 LIRLSSLMNRGDYQEALLLPQCHCYPDLEPW 74 (116)
T ss_dssp HHHHHHHHHTT-HHHHHHHHTTS--GGGHHH
T ss_pred HHHHHHHHhhHHHHHHHHhcccCCCccHHHH
Confidence 5678889999999999888877766655444
No 422
>PRK14158 heat shock protein GrpE; Provisional
Probab=26.47 E-value=6.3e+02 Score=27.99 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=29.0
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 788 AVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVKK 840 (1165)
Q Consensus 788 ~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk~LKk 840 (1165)
++.++|+++.+|.+.++... +.-.+-+++.++| .+-+|||++|..
T Consensus 65 R~~AefeN~RkR~~kE~e~~------~~~a~~~~~~~lL--pV~DnLerAl~~ 109 (194)
T PRK14158 65 RERADLENYRKRVQKEKEEL------LKYGNESLILEIL--PAVDNMERALDH 109 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH--hHHhHHHHHHhc
Confidence 56689999999988776443 2333444444444 455888888853
No 423
>PRK10325 heat shock protein GrpE; Provisional
Probab=26.45 E-value=3.4e+02 Score=29.93 Aligned_cols=45 Identities=20% Similarity=0.295 Sum_probs=28.3
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 787 KAVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVK 839 (1165)
Q Consensus 787 K~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk~LK 839 (1165)
.++.++|+++.+|.+.++..-- .-.+-+++.+.| .+-++||.+|.
T Consensus 63 lR~~Ae~eN~rkR~~ke~~~~~------~~a~~~~~~~lL--pv~DnlerAl~ 107 (197)
T PRK10325 63 LRVKAEMENLRRRTELDIEKAH------KFALEKFINELL--PVIDSLDRALE 107 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHh--hHHhHHHHHHh
Confidence 3667899999999888764332 223333444444 45588888875
No 424
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=26.27 E-value=5.5e+02 Score=24.22 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001070 738 FSQVIAMQDMLNQLMTMQKELQKQMSN 764 (1165)
Q Consensus 738 ~~q~~~mq~~l~ql~~~qke~qkqm~~ 764 (1165)
-|-+-.+.+.++.|..-|.++..+|..
T Consensus 13 ~P~l~~~~~~l~el~~sQ~~L~~~i~~ 39 (92)
T PF14712_consen 13 EPDLDRLDQQLQELRQSQEELLQQIDR 39 (92)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477778888999999999999888876
No 425
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=26.06 E-value=94 Score=24.10 Aligned_cols=31 Identities=19% Similarity=0.126 Sum_probs=27.8
Q ss_pred ccEEEEEeecCCcEEEEeccCCCcEEEEEee
Q 001070 276 AFFNQVVVLSQAGLLLFANAKKNAIYSVHLG 306 (1165)
Q Consensus 276 aff~sV~~~p~a~~ilLan~~r~aIYalhl~ 306 (1165)
...+.+++++..++|.-+|..++.||+..++
T Consensus 9 ~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~ 39 (43)
T smart00135 9 GHPNGLAVDWIEGRLYWTDWGLDVIEVANLD 39 (43)
T ss_pred CCcCEEEEeecCCEEEEEeCCCCEEEEEeCC
Confidence 4566789999999999999999999998876
No 426
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=26.04 E-value=85 Score=25.09 Aligned_cols=24 Identities=33% Similarity=0.313 Sum_probs=18.8
Q ss_pred eeecCceEEEeecCCcEEEEeCcc
Q 001070 153 IAVNKHYVCYGLKGGNVRVLNLNT 176 (1165)
Q Consensus 153 IAVn~~yIayG~kdg~IRVwdi~t 176 (1165)
++|.+.+|..|..||++..+|.+|
T Consensus 17 ~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 17 PAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp -EECTSEEEEE-TTSEEEEEETT-
T ss_pred CEEECCEEEEEcCCCEEEEEeCCC
Confidence 577788888899999999999875
No 427
>PF05960 DUF885: Bacterial protein of unknown function (DUF885); InterPro: IPR010281 This family consists of hypothetical bacterial proteins.; PDB: 3O0Y_B 3U24_A 3IUK_A.
Probab=25.79 E-value=5.1e+02 Score=31.93 Aligned_cols=30 Identities=13% Similarity=0.284 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccchhhhHH
Q 001070 746 DMLNQLMTMQKELQKQMSNLVTLPVTKEGR 775 (1165)
Q Consensus 746 ~~l~ql~~~qke~qkqm~~~v~~plsKE~k 775 (1165)
+.+.+....-+...+++..+...-|+.+-+
T Consensus 23 ~~~~~~~~~~~~~l~~L~~id~~~Ls~~~~ 52 (549)
T PF05960_consen 23 EAIEQRLAELRKLLKRLEAIDRASLSPEQQ 52 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-GSC-SHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCcccCCHHHH
Confidence 355666666777777888877777766543
No 428
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=25.69 E-value=4.7e+02 Score=26.41 Aligned_cols=9 Identities=11% Similarity=0.265 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 001070 740 QVIAMQDML 748 (1165)
Q Consensus 740 q~~~mq~~l 748 (1165)
.+-.+...|
T Consensus 7 ~v~~I~~~i 15 (151)
T cd00179 7 EVEEIRGNI 15 (151)
T ss_pred HHHHHHHHH
Confidence 333344433
No 429
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=25.65 E-value=2.4e+02 Score=29.27 Aligned_cols=30 Identities=23% Similarity=0.266 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001070 771 TKEGRRLEASLGRGIEKAVKASTDALWARFHEENA 805 (1165)
Q Consensus 771 sKE~kklE~~L~~~ieK~lk~eld~L~~R~dEerr 805 (1165)
.+++++++..+. ...++++++++|++.+..
T Consensus 24 ~~~~~~l~~~~~-----r~~ae~en~~~r~~~e~~ 53 (165)
T PF01025_consen 24 EKEIEELKERLL-----RLQAEFENYRKRLEKEKE 53 (165)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 344444444443 344677788877766543
No 430
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=25.56 E-value=1.1e+02 Score=34.75 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=13.9
Q ss_pred eEEEeecCCcEEEEeCc
Q 001070 159 YVCYGLKGGNVRVLNLN 175 (1165)
Q Consensus 159 yIayG~kdg~IRVwdi~ 175 (1165)
-++-|..+|.|.+|+-+
T Consensus 72 ~~~vG~~dg~v~~~n~n 88 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWN 88 (238)
T ss_pred eEEeecccceEEEecCC
Confidence 34458899999999888
No 431
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=25.31 E-value=4.8e+02 Score=28.59 Aligned_cols=100 Identities=22% Similarity=0.356 Sum_probs=52.8
Q ss_pred EeeecCceEEEeecCCcEEEEeCcc-hhhHhhcCCc------------c-EEEeecCCCce------eEEecCCCCCCcc
Q 001070 152 QIAVNKHYVCYGLKGGNVRVLNLNT-ATRSLLRGHT------------K-IKIWEDSKVAP------LIILKPHGGQPVN 211 (1165)
Q Consensus 152 ~IAVn~~yIayG~kdg~IRVwdi~t-~ir~llrGH~------------q-VriWD~~~g~p------l~~lephdG~sV~ 211 (1165)
.|+.-+.+||.|.+++ .-+.|+.+ ....++.-.. + +.+++..++.- +..|--.+|+.+.
T Consensus 143 ~i~~~~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~fv~~~G~~~r 221 (275)
T PF00780_consen 143 SIAFLGNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGVFVNKNGEPSR 221 (275)
T ss_pred EEEEeCCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecceEEEEcCCCCcCc
Confidence 3555588899998665 77788886 5665552111 1 33333322211 2223333454332
Q ss_pred --eeEeecCCCC--CCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEecc
Q 001070 212 --SAQYLTAPNQ--AGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLK 266 (1165)
Q Consensus 212 --SVaFl~aP~~--~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~ 266 (1165)
.+.|-..|.. =..-||++-++ +.|-+|++.++ +++|++.++
T Consensus 222 ~~~i~W~~~p~~~~~~~pyli~~~~--~~iEV~~~~~~------------~lvQ~i~~~ 266 (275)
T PF00780_consen 222 KSTIQWSSAPQSVAYSSPYLIAFSS--NSIEVRSLETG------------ELVQTIPLP 266 (275)
T ss_pred ccEEEcCCchhEEEEECCEEEEECC--CEEEEEECcCC------------cEEEEEECC
Confidence 3333222221 01123664444 66999999555 899999973
No 432
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=25.30 E-value=55 Score=40.15 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=21.1
Q ss_pred cCceEEEeecCCcEEEEeCcchhh
Q 001070 156 NKHYVCYGLKGGNVRVLNLNTATR 179 (1165)
Q Consensus 156 n~~yIayG~kdg~IRVwdi~t~ir 179 (1165)
+..||++-.+|+++||||+.+..+
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeE
Confidence 689999999999999999998443
No 433
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=25.22 E-value=99 Score=40.76 Aligned_cols=42 Identities=10% Similarity=0.308 Sum_probs=31.3
Q ss_pred cccccccCCCcccccccEeeecCceEEEeecCCcEEEEeCcc
Q 001070 135 VNPITKYGSDPELLIGRQIAVNKHYVCYGLKGGNVRVLNLNT 176 (1165)
Q Consensus 135 v~pIt~Y~sd~~~~~GR~IAVn~~yIayG~kdg~IRVwdi~t 176 (1165)
..|+-.+-.+-.++.---++++..+|+-|+-.|.|+++|..+
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s 1132 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS 1132 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccC
Confidence 345555555554444445778899999999999999999987
No 434
>PF14644 DUF4456: Domain of unknown function (DUF4456)
Probab=25.13 E-value=9.4e+02 Score=26.44 Aligned_cols=76 Identities=12% Similarity=0.120 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-----------------
Q 001070 744 MQDMLNQLMTMQKELQKQMSNLVTLPVTKEGRRLEASLGRGIEKAVKASTDALWARFHEENAR----------------- 806 (1165)
Q Consensus 744 mq~~l~ql~~~qke~qkqm~~~v~~plsKE~kklE~~L~~~ieK~lk~eld~L~~R~dEerr~----------------- 806 (1165)
.++.=+|+......+.+-...++..-..++.++++.++.... ..|..++++.++.+..
T Consensus 53 ~~elR~qv~~l~~~l~~v~~lv~~~~~~~~~~~~~~~~~~i~-----~~f~~~~~~~~~~k~~h~~~LrP~LghP~~~~e 127 (208)
T PF14644_consen 53 LQELRNQVERLEELLPKVPELVFESLLKRHWQKLCEAMKAIQ-----EEFEQQQKQWEQQKDQHEQQLRPNLGHPDNRQE 127 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhCCCcCCCCCCHHH
Confidence 444555555555555555555444444444455544433222 2344444444444433
Q ss_pred ---HHHHHHHHHHHHHHHHHH
Q 001070 807 ---NEKLLRDRTQQITGLITN 824 (1165)
Q Consensus 807 ---rEaa~~~RQ~qLL~LVS~ 824 (1165)
..+++.+||.....+|.+
T Consensus 128 L~~L~~~E~~R~~~~~~~I~~ 148 (208)
T PF14644_consen 128 LESLCEREEKRQKEHQEAIQN 148 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334556677666666666
No 435
>PF15469 Sec5: Exocyst complex component Sec5
Probab=25.08 E-value=8.3e+02 Score=25.81 Aligned_cols=62 Identities=19% Similarity=0.182 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHHhHhhcchhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 001070 889 LEATVGRQIQAQFQTSGKHALQDALKSSVEASVIPAFEKS--CKAMFEQVDATFQKGMVEHTTATLQHFESTH 959 (1165)
Q Consensus 889 Lp~aVaraIq~~vqtsv~qaIqdavr~af~stLIPAFE~s--cq~MFqQV~~~F~rGm~E~~~qlQqq~dSaK 959 (1165)
||..+.++|+. .+--.+|.+-- ..-..|+.. -..+|++|-.+++.-+.++...+.+++....
T Consensus 89 LP~~L~~~i~~---~dy~~~i~dY~------kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~ 152 (182)
T PF15469_consen 89 LPSNLRECIKK---GDYDQAINDYK------KAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLSPP 152 (182)
T ss_pred hHHHHHHHHHc---CcHHHHHHHHH------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77777777776 55555555541 122333333 4567777888888888888888877666554
No 436
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=25.08 E-value=1.9e+02 Score=36.00 Aligned_cols=71 Identities=31% Similarity=0.462 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCC-CCCC-------------------------------CCCCCCCCCCCCCCCCCC
Q 001070 22 WFPPYPPPSSSAAGDNFFPYPPPPPP-PPPE-------------------------------PHANMHPHPYPHGPHRLL 69 (1165)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~ppp~-p~p~-------------------------------~~~~~~~~~~~~~~~~~~ 69 (1165)
+.++||+-+...-|+-+.|+..|.|| ||+| |..+++.-.++.+|...-
T Consensus 436 ~~P~~Pp~~~~~p~~~~~ppg~p~pP~~p~Pg~~s~~~s~~P~q~s~~~~pp~~r~a~~~a~Pg~p~~~~~~~~vPpp~g 515 (554)
T KOG0119|consen 436 LAPAYPPTSYAPPPQSGQPPGIPLPPHPPPPGMQSAQSSSLPQQASTTSIPPGDRQAQAAAPPGAPFHGGNYNAVPPPPG 515 (554)
T ss_pred cCCCCCCccCCCCCccCCCCCCCCCCCCCCCCccccccccCCcccccccCCcccccccccCCCCCCCCCCCCCCCCCCCC
Q ss_pred CCCCCCCCCCCCCCChHHHHHhhcC
Q 001070 70 PYTPLPTTTVVSPNAGPQILALLNN 94 (1165)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~ 94 (1165)
.+|..+|.+++.+++ -||-+|+.
T Consensus 516 ~~p~~pPgap~P~~~--~~~s~~~~ 538 (554)
T KOG0119|consen 516 LQPANPPGAPPPPPS--PLFSLLNL 538 (554)
T ss_pred CCCCCCCCCCCCCCc--chhccccc
No 437
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=25.05 E-value=9.6e+02 Score=26.52 Aligned_cols=87 Identities=22% Similarity=0.316 Sum_probs=50.4
Q ss_pred HHHHHHHhhhh----cccchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 755 QKELQKQMSNL----VTLPVTKEGRRLEASLGRGIEKAVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDL 830 (1165)
Q Consensus 755 qke~qkqm~~~----v~~plsKE~kklE~~L~~~ieK~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL 830 (1165)
.|||+|.|..= |....+|+=-.+| ++-++|.++.-.++=..-.||.+...++.+....+|+.+|.-|.+. .+.+
T Consensus 69 ~KElkK~L~~kr~e~I~~k~~~dK~e~e-r~KrEin~s~I~e~V~~ikrL~~~qekrqekL~~kh~e~lq~i~ee-~~k~ 146 (185)
T PF08703_consen 69 TKELKKKLDRKRLESIKEKKTKDKDEQE-RLKREINRSHIQEVVQEIKRLEEKQEKRQEKLEEKHEEVLQQIEEE-EKKL 146 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHhHHHHHHHHHhhcccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 45666654431 1123333333333 5666666665556656678888888888888888888888888774 2334
Q ss_pred HHHHHHHHHHHHH
Q 001070 831 TASLEKLVKKELA 843 (1165)
Q Consensus 831 ~~nLEk~LKkeV~ 843 (1165)
...+++-....+.
T Consensus 147 q~~l~~eye~k~~ 159 (185)
T PF08703_consen 147 QAELEQEYEEKMK 159 (185)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 438
>PRK14162 heat shock protein GrpE; Provisional
Probab=24.89 E-value=6.9e+02 Score=27.67 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=28.4
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 788 AVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVK 839 (1165)
Q Consensus 788 ~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk~LK 839 (1165)
++.++|+++.+|.+.++... +.-.+-+++.++| .+-+|||++|.
T Consensus 64 R~~AEfeN~rkR~~kE~e~~------~~~a~~~~~~~LL--pV~DnLerAl~ 107 (194)
T PRK14162 64 RSQAEIQNMQNRYAKERAQL------IKYESQSLAKDVL--PAMDNLERALA 107 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHh--hHHhHHHHHHh
Confidence 55678899888887766433 3333444455554 45688888885
No 439
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=24.73 E-value=6.2e+02 Score=24.16 Aligned_cols=20 Identities=20% Similarity=0.483 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 001070 744 MQDMLNQLMTMQKELQKQMS 763 (1165)
Q Consensus 744 mq~~l~ql~~~qke~qkqm~ 763 (1165)
+...|+.+....++++..+.
T Consensus 5 L~~~l~~l~~~~~~~~~~~~ 24 (127)
T smart00502 5 LEELLTKLRKKAAELEDALK 24 (127)
T ss_pred HHHHHHHHHHhhHHHHHHHH
Confidence 33344444444444444333
No 440
>PRK14160 heat shock protein GrpE; Provisional
Probab=24.70 E-value=7.6e+02 Score=27.75 Aligned_cols=45 Identities=16% Similarity=0.173 Sum_probs=28.0
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 787 KAVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVK 839 (1165)
Q Consensus 787 K~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk~LK 839 (1165)
.++.++|+++.+|...++... +...+-+++.+.| .+-++||++|.
T Consensus 85 lR~~AefeN~RKR~~kE~e~~------~~~a~e~~~~~LL--pVlDnLerAl~ 129 (211)
T PRK14160 85 LRTVAEYDNYRKRTAKEKEGI------YSDACEDVLKELL--PVLDNLERAAA 129 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHh--hHHhHHHHHHh
Confidence 345678888888887765332 3334444444444 45588888875
No 441
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=24.40 E-value=4.4e+02 Score=28.92 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=25.8
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 787 KAVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVK 839 (1165)
Q Consensus 787 K~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk~LK 839 (1165)
.++.++|+++.+|.+.++..-- .++ +-+++.+.| .+-+|||++|.
T Consensus 60 lr~~Ae~eN~rkR~~re~e~~~--k~a----~e~~~~dlL--pviDnlerAl~ 104 (193)
T COG0576 60 LRAQAEFENLRKRTEREREEAK--KYA----IEKFAKDLL--PVIDNLERALE 104 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHH----HHHHHHHHH--HHHHHHHHHHH
Confidence 3556888999998887664332 222 222333333 34477777764
No 442
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=24.35 E-value=1.4e+02 Score=37.89 Aligned_cols=62 Identities=18% Similarity=0.306 Sum_probs=40.2
Q ss_pred eEEEeecCCcEEEEeCcchhhHhhcCCccEEEeecCCCceeEEecCCCCCCcc-eeEeecCCCCCCceEEEeecCCCceE
Q 001070 159 YVCYGLKGGNVRVLNLNTATRSLLRGHTKIKIWEDSKVAPLIILKPHGGQPVN-SAQYLTAPNQAGHIILVTAGPLNREV 237 (1165)
Q Consensus 159 yIayG~kdg~IRVwdi~t~ir~llrGH~qVriWD~~~g~pl~~lephdG~sV~-SVaFl~aP~~~d~~~lvtsGslnrtI 237 (1165)
.|||+.++|.|-+.=.+ . =|||++-. -|+.|. |++| .|| ++.|+ =|=-|+||
T Consensus 34 LiA~~t~~gelli~R~n-~----------qRlwtip~----------p~~~v~~sL~W--~~D---Gklla-Vg~kdG~I 86 (665)
T KOG4640|consen 34 LIATRTEKGELLIHRLN-W----------QRLWTIPI----------PGENVTASLCW--RPD---GKLLA-VGFKDGTI 86 (665)
T ss_pred hhheeccCCcEEEEEec-c----------ceeEeccC----------CCCccceeeee--cCC---CCEEE-EEecCCeE
Confidence 35566666655543222 1 47887741 266677 9999 454 56455 48888999
Q ss_pred EEeEccCcCC
Q 001070 238 KLWASASEEG 247 (1165)
Q Consensus 238 KLW~~a~~~~ 247 (1165)
+|-|...+.+
T Consensus 87 ~L~Dve~~~~ 96 (665)
T KOG4640|consen 87 RLHDVEKGGR 96 (665)
T ss_pred EEEEccCCCc
Confidence 9999977643
No 443
>PRK14149 heat shock protein GrpE; Provisional
Probab=24.28 E-value=3.5e+02 Score=29.87 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=26.3
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 788 AVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVK 839 (1165)
Q Consensus 788 ~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk~LK 839 (1165)
++.++|+++.+|++.++... +--.+-+++.+.| .+-++||++|+
T Consensus 61 R~~AefEN~rKR~~kE~e~~------~~~a~~~~~~~LL--pVlDnLerAl~ 104 (191)
T PRK14149 61 RVHADFENVKKRLERDKSMA------LEYAYEKIALDLL--PVIDALLGALK 104 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHh--hHHhHHHHHHh
Confidence 55678888888887765332 2233334444444 34577787775
No 444
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=24.08 E-value=3.8e+02 Score=33.20 Aligned_cols=62 Identities=24% Similarity=0.323 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001070 743 AMQDMLNQLMTMQKELQKQMSNLVTLPVTKEGRRLEASLGRGIEKAVKASTDALWARFHEENARNEKLLRDRTQQITGL 821 (1165)
Q Consensus 743 ~mq~~l~ql~~~qke~qkqm~~~v~~plsKE~kklE~~L~~~ieK~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~L 821 (1165)
.|...+.|+=.-.|+++|++.. ++ ++++.+.++.+....++.+......++-.++.++|..|
T Consensus 379 ~~e~k~~q~q~k~~k~~kel~~------------~~-----E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dL 440 (493)
T KOG0804|consen 379 IVERKLQQLQTKLKKCQKELKE------------ER-----EENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDL 440 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HH-----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666554 21 66777777777777777777777777777777777654
No 445
>PRK14147 heat shock protein GrpE; Provisional
Probab=23.95 E-value=3.5e+02 Score=29.23 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=27.1
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 788 AVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVK 839 (1165)
Q Consensus 788 ~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk~LK 839 (1165)
++.++|+++-+|++.++... +...+-+++.+.| .+-++||.+|.
T Consensus 43 R~~Ad~eN~rkR~~kE~e~~------~~~a~~~~~~~lL--pv~DnlerAl~ 86 (172)
T PRK14147 43 RERADLENQRKRIARDVEQA------RKFANEKLLGELL--PVFDSLDAGLT 86 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHh--hhhhHHHHHHh
Confidence 45588889988888776442 2233333444444 35578888875
No 446
>PRK14150 heat shock protein GrpE; Provisional
Probab=23.88 E-value=4.4e+02 Score=28.96 Aligned_cols=44 Identities=11% Similarity=0.287 Sum_probs=24.9
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 788 AVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVK 839 (1165)
Q Consensus 788 ~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk~LK 839 (1165)
++.++|+++.+|.+.++.. .+.-.+-+++.+.| .+-++||++|.
T Consensus 63 R~~AefeN~rkR~~kE~~~------~~~~a~~~~~~~lL--~v~DnlerAl~ 106 (193)
T PRK14150 63 RARAEVENIRRRAEQDVEK------AHKFALEKFANELL--PVIDNLERALQ 106 (193)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH--hHHhHHHHHHh
Confidence 4556777777776665532 23334444444444 45577777774
No 447
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.87 E-value=5.8e+02 Score=30.21 Aligned_cols=74 Identities=15% Similarity=0.153 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001070 743 AMQDMLNQLMTMQKELQKQMSNLVTLPVTKEGRRLEASLGRGIEKAVKASTDALWARFHEENARNEKLLRDRTQQI 818 (1165)
Q Consensus 743 ~mq~~l~ql~~~qke~qkqm~~~v~~plsKE~kklE~~L~~~ieK~lk~eld~L~~R~dEerr~rEaa~~~RQ~qL 818 (1165)
..++.+.++-.-..||. ||=+.---.-.-|+|+-|..|+..|++ +++.-..-.+++++.+|..++.-.+-|.+.
T Consensus 327 Kr~e~~~e~qrkEee~r-qmFvqrvkekE~elke~Ekel~~kf~~-lkr~h~eEk~kle~~rr~Leee~~~f~~rk 400 (406)
T KOG3859|consen 327 KRNEFLGELQRKEEEMR-QMFVQRVKEKEAELKEAEKELHEKFDR-LKRLHQEEKKKLEEKRKQLEEEVNAFQRRK 400 (406)
T ss_pred HHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888776666664 443322112234568888888888874 445545555667777766665555544443
No 448
>PRK14139 heat shock protein GrpE; Provisional
Probab=23.75 E-value=3.7e+02 Score=29.54 Aligned_cols=56 Identities=23% Similarity=0.312 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 771 TKEGRRLEASLGRGIEKAVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVK 839 (1165)
Q Consensus 771 sKE~kklE~~L~~~ieK~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk~LK 839 (1165)
-+|++.++..+ .++.++|+++.+|.+.++.... .-.+-+++.+.| .+-++||+.|.
T Consensus 45 e~e~~elkd~~-----lR~~AefeN~rKR~~kE~e~~~------~~a~~~~~~~LL--pv~DnLerAl~ 100 (185)
T PRK14139 45 EAKAAELQDSF-----LRAKAETENVRRRAQEDVAKAH------KFAIESFAESLL--PVKDSLEAALA 100 (185)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHh--hHHhHHHHHHh
Confidence 33444455444 3566899999999888764432 223333344444 45578888774
No 449
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=23.44 E-value=6.7e+02 Score=24.13 Aligned_cols=71 Identities=14% Similarity=0.213 Sum_probs=43.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHhHH
Q 001070 734 APAAFSQVIAMQDMLNQLMTMQKELQKQMSNLVTLPVTKEGRRLEASLG--RGIEKAVKASTDALWARFHEENARNE 808 (1165)
Q Consensus 734 ~~~~~~q~~~mq~~l~ql~~~qke~qkqm~~~v~~plsKE~kklE~~L~--~~ieK~lk~eld~L~~R~dEerr~rE 808 (1165)
+..-+-.+.++|.-+-..+.-..+|.+++.... ...++++..++. .++-+.+|+.||..++||..-+++-.
T Consensus 9 d~~d~~~~l~~Q~~~l~~ln~tn~~L~~~n~~s----~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~ 81 (88)
T PF10241_consen 9 DPEDLDEILALQAQTLGRLNKTNEELLNLNDLS----QQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLA 81 (88)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334477788888844444444445555555533 233334444443 35568899999999999988776543
No 450
>KOG4191 consensus Histone acetyltransferases PCAF/SAGA/ADA, subunit TADA3L/NGG1 [Chromatin structure and dynamics]
Probab=23.28 E-value=7.9e+02 Score=30.63 Aligned_cols=99 Identities=12% Similarity=0.203 Sum_probs=66.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHH
Q 001070 734 APAAFSQVIAMQDMLNQLMTMQKELQKQMSNLVTLPVTKEGRRLEASLGRGIEKAVKASTDALWARFHEENARNEKLLRD 813 (1165)
Q Consensus 734 ~~~~~~q~~~mq~~l~ql~~~qke~qkqm~~~v~~plsKE~kklE~~L~~~ieK~lk~eld~L~~R~dEerr~rEaa~~~ 813 (1165)
++.++-.+-.+|..|-++-.-..++.++|-.|+ ..|+++.| +.+.+. .+.++++.-|.|+-.-+++|-+--.+
T Consensus 403 dDEvlaeLR~lqaeLk~vS~~N~k~k~~Ll~la----~eE~a~qe--~~q~ld-dlDkqI~qaYvKr~r~~kkrKkht~~ 475 (516)
T KOG4191|consen 403 DDEVLAELRKLQAELKAVSAHNRKKKHDLLRLA----PEEMARQE--FQQVLD-DLDKQIEQAYVKRNRSRKKRKKHTVT 475 (516)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh----HHHHHHHH--HHHHHH-HHHHHHHHHHHHHHHHHHhhcccchH
Confidence 567788888899999999999999999998854 67777775 333333 46667777777766666665443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 814 RTQQITGLITNLINKDLTASLEKLVKKE 841 (1165)
Q Consensus 814 RQ~qLL~LVS~~LnktL~~nLEk~LKke 841 (1165)
--+.+++.|+. ++-+...|+..+||.
T Consensus 476 ek~~~~~~~~e--q~~~~~~Lksl~kr~ 501 (516)
T KOG4191|consen 476 EKIGSTSQISE--QSGSFPVLKSLMKRS 501 (516)
T ss_pred hhhhhHHHHHH--HhhhHHHHHHHHHHh
Confidence 33345666666 345566666666554
No 451
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=23.28 E-value=1.1e+02 Score=37.12 Aligned_cols=12 Identities=0% Similarity=-0.294 Sum_probs=5.4
Q ss_pred CcccccccccCC
Q 001070 132 QLEVNPITKYGS 143 (1165)
Q Consensus 132 qlev~pIt~Y~s 143 (1165)
.-.-.++..|..
T Consensus 241 ~~~~~~~~~~~~ 252 (409)
T KOG4590|consen 241 TSSGSSKQDATY 252 (409)
T ss_pred cCCCcCcccccc
Confidence 334445555543
No 452
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=23.02 E-value=3.3e+02 Score=31.01 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=26.2
Q ss_pred cccccEEEEEeecCCcEEEEeccCCCcEEEEEee
Q 001070 273 VEEAFFNQVVVLSQAGLLLFANAKKNAIYSVHLG 306 (1165)
Q Consensus 273 ~~~aff~sV~~~p~a~~ilLan~~r~aIYalhl~ 306 (1165)
.+++.-|-++++|+.+-+++.--.=+.+|-|.+.
T Consensus 226 ~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk~~ 259 (262)
T COG3823 226 SNDNVLNGIAHDPQQDRFLITGKLWPLLFEVKLD 259 (262)
T ss_pred cccccccceeecCcCCeEEEecCcCceeEEEEec
Confidence 4567888888888888888887777788777654
No 453
>PRK14145 heat shock protein GrpE; Provisional
Probab=22.53 E-value=5.2e+02 Score=28.72 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=27.7
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 787 KAVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVKK 840 (1165)
Q Consensus 787 K~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk~LKk 840 (1165)
.++.++|+++.+|...++... +.-.+-+++.+.| .+-++||++|+.
T Consensus 69 lR~~AEfeN~rkR~~kE~e~~------~~~a~e~~~~~LL--pV~DnLerAl~~ 114 (196)
T PRK14145 69 QRLKAEFENYRKRTEKEKSEM------VEYGKEQVILELL--PVMDNFERALAS 114 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH--hHHhHHHHHHhc
Confidence 355678888888877765433 2333444444444 455788888754
No 454
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=22.43 E-value=9.5e+02 Score=26.95 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhhhcCchHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhhhhh
Q 001070 943 GMVEHTTATLQHFESTHSPLALVLRESV------NSVSSMAQTLSGEFVDGQRKLFDLA 995 (1165)
Q Consensus 943 Gm~E~~~qlQqq~dSaKtsLv~~L~etI------ssmaa~q~~LqsEll~lQrQL~~~a 995 (1165)
.++|+++.+-+++++.-..+-.+|+++- +.++.-.+.|..|+.++-++|.++.
T Consensus 134 ~Y~eqm~~aa~~l~~LN~~Ye~QL~~as~q~~~~~~i~~na~~fkeQ~~kLa~NL~sLN 192 (202)
T TIGR03513 134 KYIEQMSSLAANMEGLNTIYEAQLKGASSHADANNEIAINSSSLKEEMEKMAANLTSLN 192 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555444444444332 2223334567777777777766543
No 455
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=22.02 E-value=1.2e+03 Score=26.50 Aligned_cols=141 Identities=21% Similarity=0.256 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhHhhhhhhHHHHHHHHHHHHHh--hcchhhhHHHHHHHHHHHhHHH
Q 001070 816 QQITGLITNLINKDLTASLEKLVKKELA-AVGPAIVRTISPSIEKTITSAIVESFQ--RGVGDKAVNQLERSVNSRLEAT 892 (1165)
Q Consensus 816 ~qLL~LVS~~LnktL~~nLEk~LKkeV~-sVvPAI~~~t~~avekqlss~l~eslq--~~l~dk~vnqLeK~V~s~Lp~a 892 (1165)
+.|..++++++|..+..+=+..+.|+=. .|.-- .+.....+.+.+.+.-...|. +.=.||+.|.||| +++.|.+.
T Consensus 65 ETIt~aiT~v~ndsl~~vsk~~vtkaqq~~v~~Q-Q~~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk-~ks~lr~e 142 (220)
T KOG3156|consen 65 ETITSAITTVLNDSLETVSKELVTKAQQEKVSYQ-QKVDFAKIRSELVSIERSEFANLRAENEKLKNDLEK-LKSSLRHE 142 (220)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 5677777776554443333333333322 22111 111222333444332222221 0123577777775 45778887
Q ss_pred HHHHHHH-hhhhhhhHHHHHH-HHHHhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHH
Q 001070 893 VGRQIQA-QFQTSGKHALQDA-LKSSVEASVIPAFEKSCKAMFEQVDATFQKGMVEHTTATLQHFESTHSPLALVLRESV 970 (1165)
Q Consensus 893 VaraIq~-~vqtsv~qaIqda-vr~af~stLIPAFE~scq~MFqQV~~~F~rGm~E~~~qlQqq~dSaKtsLv~~L~etI 970 (1165)
+.+..+. ++.= .|++. +++......+--+| ++ ..+...+.-+..+++++|+...+-|-..+
T Consensus 143 i~~~~a~~rLdL----NLEkgr~~d~~~~~~l~~~e---------~s----~kId~Ev~~lk~qi~s~K~qt~qw~~g~v 205 (220)
T KOG3156|consen 143 ISKTTAEFRLDL----NLEKGRIKDESSSHDLQIKE---------IS----TKIDQEVTNLKTQIESVKTQTIQWLIGVV 205 (220)
T ss_pred HHhcchhceeec----chhhccccchhhhcchhHhH---------HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765433 0000 01111 22222222222222 22 23333334556677888877777777766
Q ss_pred HHHHH
Q 001070 971 NSVSS 975 (1165)
Q Consensus 971 ssmaa 975 (1165)
-+..+
T Consensus 206 ~~~~A 210 (220)
T KOG3156|consen 206 TGTSA 210 (220)
T ss_pred HHHHH
Confidence 55444
No 456
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=21.96 E-value=1.7e+03 Score=28.42 Aligned_cols=15 Identities=33% Similarity=0.328 Sum_probs=8.4
Q ss_pred chhhhHHHHHHHHHH
Q 001070 769 PVTKEGRRLEASLGR 783 (1165)
Q Consensus 769 plsKE~kklE~~L~~ 783 (1165)
.+.++++++|..+..
T Consensus 206 ~~~~~~~~le~el~~ 220 (650)
T TIGR03185 206 SILSEIEALEAELKE 220 (650)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445566666655544
No 457
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=21.93 E-value=8.3e+02 Score=24.64 Aligned_cols=20 Identities=20% Similarity=0.420 Sum_probs=13.6
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 001070 880 QLERSVNSRLEATVGRQIQA 899 (1165)
Q Consensus 880 qLeK~V~s~Lp~aVaraIq~ 899 (1165)
.+|+........-|.|++.-
T Consensus 106 ~~Q~~~~~~~k~~i~Rq~~i 125 (151)
T cd00179 106 KAQRKYRERYKERIQRQLEI 125 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777654
No 458
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=21.55 E-value=1.6e+03 Score=27.88 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=18.7
Q ss_pred ccCcHHHHHHHHHhcCCHHHHHHHhhccC
Q 001070 1037 SDRKYEEAFTTALQRSDVSIVSWLCSQVD 1065 (1165)
Q Consensus 1037 ~eGqyEEAF~kALqSsDlsLV~~LcsrvD 1065 (1165)
.-|.++..|+-||..-.+.|..|-.--..
T Consensus 442 s~~~~~a~~l~al~~ekl~L~~w~~a~~s 470 (552)
T KOG2129|consen 442 SFAVLEAIRLEALRTEKLPLIAWRLAALS 470 (552)
T ss_pred hHhhhhhhhhhhhcccccchHHHHHhhcc
Confidence 34567777778887766777666544333
No 459
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.28 E-value=6.7e+02 Score=31.37 Aligned_cols=53 Identities=21% Similarity=0.179 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhccCcccccccCCCCcchhHHHHHHHHHhhhccc
Q 001070 1041 YEEAFTTALQRSDVSIVSWLCSQVDMHGLLSMVPLPLSQGVLLSLLQQLACDINK 1095 (1165)
Q Consensus 1041 yEEAF~kALqSsDlsLV~~LcsrvDP~~Lfsl~PlpLSQgVLLSLIQQLSsDL~t 1095 (1165)
-..|+-++|..+=..+-+|+-.+|-=.|=.-..| =.+-|.|=|=|||..|-+.
T Consensus 412 G~~alG~alsgG~~e~adW~~krygqsFdAVyVp--pG~~vavHi~q~i~IDye~ 464 (472)
T TIGR03752 412 GNYALGQALSGGVDEVADWVNKRYGQSFDAVYVP--PGAQVAVHIDQELAIDYEP 464 (472)
T ss_pred HHHHHHhhhccchHHHHHHHHHHhhccccEEEeC--CCCEEEEEecccccCCCCc
Confidence 4667888888887779999988887543222122 1234445555777777654
No 460
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=21.27 E-value=2.9e+02 Score=34.86 Aligned_cols=11 Identities=36% Similarity=0.567 Sum_probs=7.2
Q ss_pred hhhHhhcCCcc
Q 001070 177 ATRSLLRGHTK 187 (1165)
Q Consensus 177 ~ir~llrGH~q 187 (1165)
.+.+||-||-.
T Consensus 309 vvNALl~g~~G 319 (582)
T PF03276_consen 309 VVNALLGGHLG 319 (582)
T ss_pred HHHHHhcCCCc
Confidence 44457777776
No 461
>PRK15361 pathogenicity island 2 effector protein SseD; Provisional
Probab=21.17 E-value=1.2e+03 Score=26.09 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Q 001070 806 RNEKLLRDRTQQITGLITNLIN-------KDLTASLEKL 837 (1165)
Q Consensus 806 ~rEaa~~~RQ~qLL~LVS~~Ln-------ktL~~nLEk~ 837 (1165)
++=.....|+..+.++++++.+ |++++..||+
T Consensus 130 ~lg~a~mtR~Ad~ek~~sdlQ~~~AqsY~K~i~e~~dKA 168 (195)
T PRK15361 130 GLGAGVAQRQSDQDKAIADLQQNGAQSYNKSLTEIMEKA 168 (195)
T ss_pred chhhhhHhhhHHHHHHHHHHHhccHHHHHhhHHHHHHHH
Confidence 4445667777778888877654 5666666655
No 462
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=20.88 E-value=64 Score=39.59 Aligned_cols=8 Identities=38% Similarity=0.335 Sum_probs=3.2
Q ss_pred EEEEEeec
Q 001070 300 IYSVHLGY 307 (1165)
Q Consensus 300 IYalhl~~ 307 (1165)
+--+||+-
T Consensus 182 ~~SFhl~~ 189 (465)
T PF01690_consen 182 TISFHLEA 189 (465)
T ss_pred eEEEEEEe
Confidence 33344443
No 463
>PRK14153 heat shock protein GrpE; Provisional
Probab=20.84 E-value=4.5e+02 Score=29.10 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=27.2
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 787 KAVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVK 839 (1165)
Q Consensus 787 K~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk~LK 839 (1165)
.++.++|+++-+|.+.++.. .+.-.+-+++.++| .+-++||++|+
T Consensus 57 lR~~AEfeN~rKR~~kE~e~------~~~~a~~~~~~~LL--pv~DnLerAl~ 101 (194)
T PRK14153 57 FRLAAEFDNFRKRTAREMEE------NRKFVLEQVLLDLL--EVTDNFERALE 101 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHh--hHHhHHHHHHh
Confidence 35667888888888876532 22333334444444 45578888875
No 464
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=20.80 E-value=1.3e+03 Score=29.61 Aligned_cols=88 Identities=19% Similarity=0.270 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHhHHHHHHHHHHH
Q 001070 742 IAMQDMLNQLMTMQKELQKQMSNLVTLPVTKEGRRLEASLGRGIEKAVKASTDALWARFH----EENARNEKLLRDRTQQ 817 (1165)
Q Consensus 742 ~~mq~~l~ql~~~qke~qkqm~~~v~~plsKE~kklE~~L~~~ieK~lk~eld~L~~R~d----Eerr~rEaa~~~RQ~q 817 (1165)
..+-+.|-||+.+.. ..|+.-+-.+|..-+.---+..|.+|+.++. ++...||+...==.++
T Consensus 95 ~kvaDvL~QlL~tdd--------------~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~k 160 (556)
T PF05918_consen 95 SKVADVLVQLLQTDD--------------PVELDAVKNSLMSLLKQDPKGTLTGLFSQIESSKSGDEQVRERALKFLREK 160 (556)
T ss_dssp HHHHHHHHHHTT-----------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccc--------------HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHH
Confidence 344466777665332 2233335566777677667778888888886 4444455332222233
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 001070 818 ITGLITNLIN--KDLTASLEKLVKKELA 843 (1165)
Q Consensus 818 LL~LVS~~Ln--ktL~~nLEk~LKkeV~ 843 (1165)
|..+-.+.++ +.+-+-|...|||.+.
T Consensus 161 l~~l~~~~~~p~~E~e~~i~~~ikkvL~ 188 (556)
T PF05918_consen 161 LKPLKPELLTPQKEMEEFIVDEIKKVLQ 188 (556)
T ss_dssp GGGS-TTTS---HHHHHHHHHHHHHHCT
T ss_pred HhhCcHHHhhchHHHHHHHHHHHHHHHH
Confidence 3344444444 4444444444444443
No 465
>PRK14146 heat shock protein GrpE; Provisional
Probab=20.58 E-value=4.3e+02 Score=29.60 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=28.5
Q ss_pred HHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001070 788 AVKASTDALWARFHEENARNEKLLRDRTQQITGLITNLINKDLTASLEKLVK 839 (1165)
Q Consensus 788 ~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL~LVS~~LnktL~~nLEk~LK 839 (1165)
++.++|+++.+|.+.++... +.-.+-+++.++| .+-+|||+++.
T Consensus 79 R~~AdfeN~rkR~~kE~e~~------~~~a~e~~~~~lL--pv~DnlerAl~ 122 (215)
T PRK14146 79 RERAEFQNFKRRSAQEFVSI------RKEAVKSLVSGFL--NPIDNLERVGA 122 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHh--hHHhHHHHHHh
Confidence 55678888888887766433 3444555555555 45688888775
No 466
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=20.49 E-value=1.4e+02 Score=31.32 Aligned_cols=76 Identities=14% Similarity=0.263 Sum_probs=44.7
Q ss_pred cCCcEEEEeCcchhhHhhcCC---cc------------EEEeecCCCceeEEecCCCCCCcceeEeecCCCCCCceEEEe
Q 001070 165 KGGNVRVLNLNTATRSLLRGH---TK------------IKIWEDSKVAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVT 229 (1165)
Q Consensus 165 kdg~IRVwdi~t~ir~llrGH---~q------------VriWD~~~g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvt 229 (1165)
.+..||.+||+..++.|=.|- ++ +-+||+..-.-+--.+-+|| |+++.|=.--+.+... +++
T Consensus 37 ~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fyke~~DG--vn~i~~g~~~~~~~~l-~iv 113 (136)
T PF14781_consen 37 QDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFYKEVPDG--VNAIVIGKLGDIPSPL-VIV 113 (136)
T ss_pred ccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhhhhCccc--eeEEEEEecCCCCCcE-EEE
Confidence 678999999998777763332 11 78888876554444455577 8888873212222222 444
Q ss_pred ecCCCceEEEeEccCc
Q 001070 230 AGPLNREVKLWASASE 245 (1165)
Q Consensus 230 sGslnrtIKLW~~a~~ 245 (1165)
|| |-.|.=+|..+.
T Consensus 114 GG--ncsi~Gfd~~G~ 127 (136)
T PF14781_consen 114 GG--NCSIQGFDYEGN 127 (136)
T ss_pred Cc--eEEEEEeCCCCc
Confidence 44 455555554443
No 467
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=20.30 E-value=9.7e+02 Score=31.35 Aligned_cols=38 Identities=11% Similarity=0.075 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001070 782 GRGIEKAVKASTDALWARFHEENARNEKLLRDRTQQIT 819 (1165)
Q Consensus 782 ~~~ieK~lk~eld~L~~R~dEerr~rEaa~~~RQ~qLL 819 (1165)
.++++..+.+++++++.-+.+-+|..|+.+.+..+.=+
T Consensus 86 ~~e~t~~~v~~~~~~~~~i~~vk~~~e~~~~~~~e~~~ 123 (700)
T COG1480 86 DAEITQNIVQLYQNFFDAINEVKRSLEENEDENTEYSL 123 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHH
Confidence 45666777778888888888877666666555554443
No 468
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=20.22 E-value=2.4e+02 Score=34.91 Aligned_cols=108 Identities=12% Similarity=0.234 Sum_probs=62.4
Q ss_pred EEEeecCCCceeEEecCC-CCCCcceeEeecCCCCCCceEEEeecCCCceEEEeEccCcCCCCCCCCCCCcceEEEEecc
Q 001070 188 IKIWEDSKVAPLIILKPH-GGQPVNSAQYLTAPNQAGHIILVTAGPLNREVKLWASASEEGWSLPTHAESWKCTQTLDLK 266 (1165)
Q Consensus 188 VriWD~~~g~pl~~leph-dG~sV~SVaFl~aP~~~d~~~lvtsGslnrtIKLW~~a~~~~~~~~~~~~~w~C~QTLe~~ 266 (1165)
+.|||..+..+++++.=. +|.-+-.|-|+..|+... -.++.-+..+|-+|--... ..|.-...++..
T Consensus 224 l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~---gFvg~aLss~i~~~~k~~~---------g~W~a~kVi~ip 291 (461)
T PF05694_consen 224 LHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANY---GFVGCALSSSIWRFYKDDD---------GEWAAEKVIDIP 291 (461)
T ss_dssp EEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--E---EEEEEE--EEEEEEEE-ET---------TEEEEEEEEEE-
T ss_pred EEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccc---eEEEEeccceEEEEEEcCC---------CCeeeeEEEECC
Confidence 999999999999988743 455788999988777654 3344458888877764222 357888888875
Q ss_pred CCC-CCc--cc--------cccEEEEEeecCCcEEEEeccCCCcEEEEEeec
Q 001070 267 SSA-KPR--VE--------EAFFNQVVVLSQAGLLLFANAKKNAIYSVHLGY 307 (1165)
Q Consensus 267 ~s~-~~~--~~--------~aff~sV~~~p~a~~ilLan~~r~aIYalhl~~ 307 (1165)
... ++- .+ -.++--+.++.|-+||.++|--..-|--.-|.-
T Consensus 292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 432 100 01 145666778999999999987666665554443
No 469
>PRK02888 nitrous-oxide reductase; Validated
Probab=20.21 E-value=3.5e+02 Score=34.82 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=49.4
Q ss_pred CcEEEEeCcchhhHhhcC------CccEEEeecCC----CceeEEecCCCCCCcceeEeecCCCCCCceEEEeecCCCce
Q 001070 167 GNVRVLNLNTATRSLLRG------HTKIKIWEDSK----VAPLIILKPHGGQPVNSAQYLTAPNQAGHIILVTAGPLNRE 236 (1165)
Q Consensus 167 g~IRVwdi~t~ir~llrG------H~qVriWD~~~----g~pl~~lephdG~sV~SVaFl~aP~~~d~~~lvtsGslnrt 236 (1165)
..+.++|+.......-.| =..|.|.|.++ +..+..+-| -|+.+.-|+| + ||+++++++|.+..+
T Consensus 271 d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~v--S---PDGkylyVanklS~t 344 (635)
T PRK02888 271 DWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNT--S---PDGKYFIANGKLSPT 344 (635)
T ss_pred ceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEE--C---CCCCEEEEeCCCCCc
Confidence 466677776422222223 12399999998 444444444 3788888999 3 555679999999999
Q ss_pred EEEeEccCc
Q 001070 237 VKLWASASE 245 (1165)
Q Consensus 237 IKLW~~a~~ 245 (1165)
+-+.|.+.-
T Consensus 345 VSVIDv~k~ 353 (635)
T PRK02888 345 VTVIDVRKL 353 (635)
T ss_pred EEEEEChhh
Confidence 999998664
No 470
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.12 E-value=5.9e+02 Score=31.71 Aligned_cols=67 Identities=19% Similarity=0.251 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHH
Q 001070 736 AAFSQVIAMQDMLNQLMTMQKELQKQMSNLVTLPVTKEGRRLEASLGRGIEKAVKASTDALWARFHEENARNEKLL 811 (1165)
Q Consensus 736 ~~~~q~~~mq~~l~ql~~~qke~qkqm~~~v~~plsKE~kklE~~L~~~ieK~lk~eld~L~~R~dEerr~rEaa~ 811 (1165)
-||--++++|.--+|++.|-.+ .+.+.||++.+|.-|..+--|....+|+.|++-++.-+...+..+
T Consensus 449 ~aykllt~iH~nc~ei~E~i~~---------tg~~~revrdlE~qI~~E~~k~~l~slEkl~~Dyqairqen~~L~ 515 (521)
T KOG1937|consen 449 LAYKLLTRIHLNCMEILEMIRE---------TGALKREVRDLESQIYVEEQKQYLKSLEKLHQDYQAIRQENDQLF 515 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------cchHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888877543 458899999999999999999999999999988887776665443
No 471
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=20.08 E-value=1.9e+02 Score=33.55 Aligned_cols=31 Identities=32% Similarity=0.575 Sum_probs=27.3
Q ss_pred CceEEEeecCCcEEEEeCcc--hhhHhhcCCcc
Q 001070 157 KHYVCYGLKGGNVRVLNLNT--ATRSLLRGHTK 187 (1165)
Q Consensus 157 ~~yIayG~kdg~IRVwdi~t--~ir~llrGH~q 187 (1165)
-+.+|.|..||.|-|||... ..-++|+-|+.
T Consensus 192 q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~ 224 (319)
T KOG4714|consen 192 QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKA 224 (319)
T ss_pred ccEEEEecCCCeEEEEEcccccchHHHHHHhhh
Confidence 35679999999999999987 77789999997
No 472
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=20.03 E-value=1.2e+03 Score=25.87 Aligned_cols=28 Identities=18% Similarity=0.478 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 001070 740 QVIAMQDMLNQLMTMQKELQKQMSNLVT 767 (1165)
Q Consensus 740 q~~~mq~~l~ql~~~qke~qkqm~~~v~ 767 (1165)
.+...+..|.++..-.+.+++++...+.
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888888888888888888765
Done!