Query 001071
Match_columns 1165
No_of_seqs 390 out of 1534
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 15:01:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02248 cellulose synthase-li 100.0 8E-322 0E+00 2858.5 85.7 1086 49-1165 30-1135(1135)
2 PLN02400 cellulose synthase 100.0 4E-272 1E-276 2428.9 68.3 932 145-1160 33-1075(1085)
3 PLN02638 cellulose synthase A 100.0 3E-271 7E-276 2420.4 68.0 932 145-1160 14-1070(1079)
4 PLN02436 cellulose synthase A 100.0 2E-270 5E-275 2404.9 71.3 927 145-1157 33-1082(1094)
5 PLN02915 cellulose synthase A 100.0 2E-267 4E-272 2382.7 70.7 929 143-1160 10-1035(1044)
6 PLN02189 cellulose synthase 100.0 1E-261 3E-266 2331.1 70.4 927 145-1161 31-1032(1040)
7 PLN02195 cellulose synthase A 100.0 1E-260 2E-265 2313.7 69.7 914 145-1160 3-966 (977)
8 PF03552 Cellulose_synt: Cellu 100.0 3E-214 7E-219 1876.5 44.6 698 391-1163 1-720 (720)
9 PLN02190 cellulose synthase-li 100.0 9E-207 2E-211 1816.8 58.7 725 288-1146 7-754 (756)
10 PLN02893 Cellulose synthase-li 100.0 2E-198 4E-203 1754.3 64.2 713 287-1146 9-728 (734)
11 TIGR03030 CelA cellulose synth 100.0 5.9E-64 1.3E-68 612.7 48.2 493 307-1122 57-561 (713)
12 PRK11498 bcsA cellulose syntha 100.0 5.5E-64 1.2E-68 615.0 46.0 475 309-1122 189-674 (852)
13 PRK05454 glucosyltransferase M 100.0 6.7E-33 1.5E-37 337.1 43.4 220 608-962 193-420 (691)
14 cd04191 Glucan_BSP_ModH Glucan 100.0 7.9E-31 1.7E-35 286.1 20.9 182 607-916 67-253 (254)
15 COG1215 Glycosyltransferases, 100.0 4.4E-28 9.6E-33 277.3 30.8 165 621-920 121-290 (439)
16 PRK14583 hmsR N-glycosyltransf 100.0 2E-26 4.4E-31 268.6 33.9 163 624-921 142-307 (444)
17 PRK11204 N-glycosyltransferase 99.9 2.2E-24 4.7E-29 248.2 34.3 173 609-921 111-286 (420)
18 TIGR03111 glyc2_xrt_Gpos1 puta 99.9 5.4E-24 1.2E-28 248.3 34.6 109 859-970 232-341 (439)
19 PRK14716 bacteriophage N4 adso 99.9 1.9E-22 4.1E-27 238.9 31.2 196 623-944 135-355 (504)
20 PF14569 zf-UDP: Zinc-binding 99.9 3.3E-25 7.2E-30 198.4 2.9 64 145-208 6-80 (80)
21 cd06421 CESA_CelA_like CESA_Ce 99.9 8.1E-22 1.8E-26 205.6 19.5 170 610-918 61-234 (234)
22 PRK11234 nfrB bacteriophage N4 99.9 5.2E-21 1.1E-25 234.8 27.6 171 623-919 132-334 (727)
23 cd06437 CESA_CaSu_A2 Cellulose 99.9 2.1E-21 4.5E-26 204.8 20.9 167 608-914 62-232 (232)
24 cd06427 CESA_like_2 CESA_like_ 99.9 2.7E-20 5.8E-25 198.4 20.9 162 624-920 71-236 (241)
25 cd06435 CESA_NdvC_like NdvC_li 99.8 1.6E-19 3.4E-24 190.1 22.0 171 610-919 59-233 (236)
26 PF13641 Glyco_tranf_2_3: Glyc 99.8 8.4E-21 1.8E-25 198.4 7.3 165 609-913 60-228 (228)
27 PRK15489 nfrB bacteriophage N4 99.8 4.4E-17 9.6E-22 198.8 29.6 170 624-919 141-342 (703)
28 TIGR03472 HpnI hopanoid biosyn 99.7 4.1E-16 8.8E-21 178.6 26.7 154 622-915 111-273 (373)
29 cd04190 Chitin_synth_C C-termi 99.7 1.7E-17 3.8E-22 178.6 12.6 165 640-916 72-243 (244)
30 cd04192 GT_2_like_e Subfamily 99.7 4.7E-16 1E-20 161.2 17.1 157 623-913 68-229 (229)
31 cd02520 Glucosylceramide_synth 99.7 1.3E-15 2.8E-20 157.7 15.8 121 623-912 72-194 (196)
32 PF13632 Glyco_trans_2_3: Glyc 99.7 2.4E-15 5.3E-20 154.6 16.4 137 644-914 1-143 (193)
33 cd06434 GT2_HAS Hyaluronan syn 99.6 3.6E-15 7.9E-20 156.4 18.0 166 624-916 64-234 (235)
34 cd06439 CESA_like_1 CESA_like_ 99.6 1.2E-14 2.6E-19 154.5 20.1 52 863-916 199-250 (251)
35 COG2943 MdoH Membrane glycosyl 99.6 9.7E-12 2.1E-16 144.3 35.9 219 609-961 214-438 (736)
36 cd02525 Succinoglycan_BP_ExoA 99.5 2.1E-12 4.6E-17 135.7 18.0 54 865-920 180-233 (249)
37 TIGR03469 HonB hopene-associat 99.4 2.1E-11 4.6E-16 140.7 27.2 46 386-436 37-82 (384)
38 cd06438 EpsO_like EpsO protein 99.1 7.5E-10 1.6E-14 113.5 12.2 101 624-729 63-168 (183)
39 cd06436 GlcNAc-1-P_transferase 99.1 1.1E-09 2.4E-14 113.8 12.9 103 624-730 65-177 (191)
40 PF13506 Glyco_transf_21: Glyc 99.0 1E-09 2.2E-14 114.4 11.4 97 622-729 15-114 (175)
41 cd04195 GT2_AmsE_like GT2_AmsE 98.9 2E-08 4.4E-13 103.2 16.3 68 609-688 57-124 (201)
42 PF14570 zf-RING_4: RING/Ubox 98.9 3.7E-10 8.1E-15 94.6 2.5 42 154-195 2-48 (48)
43 cd04184 GT2_RfbC_Mx_like Myxoc 98.9 2.1E-08 4.6E-13 102.9 15.4 53 624-684 70-123 (202)
44 cd06433 GT_2_WfgS_like WfgS an 98.6 5.3E-07 1.2E-11 91.2 14.4 56 625-687 63-118 (202)
45 cd04186 GT_2_like_c Subfamily 98.6 1.4E-06 3E-11 85.6 14.6 65 624-729 61-125 (166)
46 cd02510 pp-GalNAc-T pp-GalNAc- 98.5 3.3E-06 7.2E-11 93.9 18.7 41 393-436 2-42 (299)
47 PF03142 Chitin_synth_2: Chiti 98.5 2.1E-05 4.6E-10 94.9 26.6 53 864-918 324-378 (527)
48 cd02522 GT_2_like_a GT_2_like_ 98.5 3.7E-06 7.9E-11 87.7 16.9 40 391-436 1-40 (221)
49 cd04196 GT_2_like_d Subfamily 98.5 3.1E-06 6.7E-11 87.2 15.0 56 624-686 66-121 (214)
50 PF00535 Glycos_transf_2: Glyc 98.4 3.3E-07 7.2E-12 89.1 6.5 110 609-729 55-166 (169)
51 cd06420 GT2_Chondriotin_Pol_N 98.4 5.6E-06 1.2E-10 83.7 15.1 39 624-667 66-104 (182)
52 cd06423 CESA_like CESA_like is 98.4 5.3E-06 1.1E-10 80.4 12.6 109 610-730 56-168 (180)
53 cd04185 GT_2_like_b Subfamily 98.3 9.4E-06 2E-10 83.9 15.1 55 625-685 64-118 (202)
54 PLN02726 dolichyl-phosphate be 98.3 1.5E-05 3.3E-10 85.9 17.2 49 625-681 81-129 (243)
55 cd06442 DPM1_like DPM1_like re 98.3 1.2E-05 2.5E-10 84.1 15.2 58 611-681 57-114 (224)
56 cd06913 beta3GnTL1_like Beta 1 98.1 9E-05 2E-09 78.1 16.2 41 624-669 71-111 (219)
57 cd02526 GT2_RfbF_like RfbF is 98.0 2E-05 4.4E-10 83.2 9.6 66 609-684 49-117 (237)
58 cd04179 DPM_DPG-synthase_like 98.0 6.7E-05 1.4E-09 75.9 12.5 108 610-731 57-166 (185)
59 PRK10073 putative glycosyl tra 97.9 0.00017 3.7E-09 82.5 14.6 43 388-436 5-47 (328)
60 PRK10018 putative glycosyl tra 97.9 0.00063 1.4E-08 76.5 18.4 59 608-678 61-119 (279)
61 cd04188 DPG_synthase DPG_synth 97.8 0.00016 3.6E-09 75.7 12.5 51 625-683 70-120 (211)
62 KOG2571 Chitin synthase/hyalur 97.7 0.00035 7.6E-09 87.8 14.2 50 864-915 549-598 (862)
63 cd04187 DPM1_like_bac Bacteria 97.6 0.00059 1.3E-08 69.5 12.2 104 609-730 57-161 (181)
64 TIGR01556 rhamnosyltran L-rham 97.6 0.00031 6.8E-09 77.3 10.8 71 606-685 44-114 (281)
65 cd00761 Glyco_tranf_GTA_type G 97.4 0.0025 5.5E-08 60.2 12.6 51 624-681 64-114 (156)
66 PRK10063 putative glycosyl tra 97.4 0.0058 1.3E-07 67.3 16.7 44 389-436 1-45 (248)
67 PTZ00260 dolichyl-phosphate be 97.3 0.0052 1.1E-07 70.8 16.5 52 624-680 149-200 (333)
68 COG5175 MOT2 Transcriptional r 97.2 0.0001 2.2E-09 83.0 1.1 48 149-196 15-65 (480)
69 COG1216 Predicted glycosyltran 96.8 0.029 6.3E-07 63.4 16.0 68 609-686 58-126 (305)
70 PRK13915 putative glucosyl-3-p 96.8 0.012 2.6E-07 67.1 13.1 50 624-680 102-152 (306)
71 PF10111 Glyco_tranf_2_2: Glyc 96.4 0.0099 2.1E-07 66.5 8.8 62 624-690 75-136 (281)
72 PRK10714 undecaprenyl phosphat 93.9 0.74 1.6E-05 53.1 13.3 46 624-676 77-122 (325)
73 KOG2547 Ceramide glucosyltrans 92.5 0.14 3.1E-06 59.7 4.8 48 863-912 267-314 (431)
74 TIGR00570 cdk7 CDK-activating 89.8 0.29 6.3E-06 56.3 3.8 50 147-196 2-55 (309)
75 cd02514 GT13_GLCNAC-TI GT13_GL 87.0 3.1 6.8E-05 48.7 9.8 90 622-733 83-176 (334)
76 smart00504 Ubox Modified RING 82.5 1 2.2E-05 39.1 2.5 43 150-196 3-47 (63)
77 COG0463 WcaA Glycosyltransfera 80.5 3.1 6.8E-05 39.8 5.3 44 388-437 2-45 (291)
78 PHA02862 5L protein; Provision 80.4 1.3 2.9E-05 45.9 2.8 49 148-196 2-54 (156)
79 PF14446 Prok-RING_1: Prokaryo 75.1 1.9 4.1E-05 38.0 1.8 43 147-194 4-51 (54)
80 cd00162 RING RING-finger (Real 70.6 3.3 7.3E-05 32.4 2.2 43 150-193 1-44 (45)
81 KOG2068 MOT2 transcription fac 68.5 3.6 7.9E-05 47.8 2.7 48 148-196 249-299 (327)
82 PF05290 Baculo_IE-1: Baculovi 65.4 3.3 7.2E-05 42.5 1.5 50 147-196 79-133 (140)
83 KOG2068 MOT2 transcription fac 63.9 3.3 7.2E-05 48.1 1.3 29 168-196 1-31 (327)
84 PF14447 Prok-RING_4: Prokaryo 63.5 4.4 9.5E-05 35.9 1.6 43 149-196 8-51 (55)
85 PHA02825 LAP/PHD finger-like p 56.3 11 0.00025 39.9 3.5 52 145-196 5-60 (162)
86 PF02364 Glucan_synthase: 1,3- 56.2 2.4E+02 0.0053 37.2 15.6 74 863-940 408-482 (817)
87 COG4858 Uncharacterized membra 52.4 68 0.0015 35.2 8.5 58 1072-1129 100-159 (226)
88 KOG0006 E3 ubiquitin-protein l 50.0 10 0.00022 43.9 2.1 33 145-177 312-352 (446)
89 cd02511 Beta4Glucosyltransfera 47.0 43 0.00093 36.2 6.3 41 624-669 58-98 (229)
90 smart00184 RING Ring finger. E 46.5 14 0.0003 27.7 1.8 37 151-190 1-39 (39)
91 PF04564 U-box: U-box domain; 45.7 14 0.00029 33.9 1.9 44 150-196 6-51 (73)
92 PRK00420 hypothetical protein; 44.6 9.8 0.00021 38.3 0.9 27 164-196 25-52 (112)
93 PF06906 DUF1272: Protein of u 40.0 24 0.00052 31.6 2.4 41 149-194 6-51 (57)
94 KOG3800 Predicted E3 ubiquitin 38.7 19 0.00041 41.5 2.1 31 166-196 22-52 (300)
95 KOG2932 E3 ubiquitin ligase in 38.4 17 0.00037 42.1 1.6 31 166-196 95-135 (389)
96 TIGR00599 rad18 DNA repair pro 36.1 24 0.00052 42.5 2.4 45 148-196 26-72 (397)
97 KOG0320 Predicted E3 ubiquitin 34.9 22 0.00047 38.5 1.7 45 148-194 131-177 (187)
98 PLN03208 E3 ubiquitin-protein 34.5 41 0.00089 36.9 3.7 47 147-196 17-80 (193)
99 PF14446 Prok-RING_1: Prokaryo 33.1 17 0.00037 32.2 0.5 16 181-196 18-33 (54)
100 TIGR02556 cas_TM1802 CRISPR-as 32.6 23 0.0005 44.4 1.6 32 148-179 170-219 (555)
101 PRK12495 hypothetical protein; 32.0 28 0.00061 38.8 2.0 26 164-196 44-70 (226)
102 PF09484 Cas_TM1802: CRISPR-as 31.6 27 0.00058 43.9 2.0 35 145-179 195-251 (593)
103 PRK14559 putative protein seri 31.6 26 0.00056 44.8 1.8 24 171-195 29-52 (645)
104 COG3813 Uncharacterized protei 31.0 32 0.0007 32.2 1.9 40 150-196 7-53 (84)
105 PRK12438 hypothetical protein; 30.6 5E+02 0.011 35.2 12.9 45 1103-1147 260-304 (991)
106 PHA02929 N1R/p28-like protein; 29.9 48 0.001 37.5 3.4 50 145-195 171-227 (238)
107 PF13920 zf-C3HC4_3: Zinc fing 29.4 32 0.0007 29.0 1.5 44 149-196 3-49 (50)
108 KOG0311 Predicted E3 ubiquitin 29.3 7.9 0.00017 45.5 -2.8 48 148-195 43-90 (381)
109 cd00350 rubredoxin_like Rubred 28.7 25 0.00054 27.8 0.7 19 176-194 9-27 (33)
110 PF02318 FYVE_2: FYVE-type zin 25.2 11 0.00025 37.6 -2.2 45 146-190 52-100 (118)
111 COG4817 DNA-binding ferritin-l 25.0 61 0.0013 32.5 2.7 29 490-524 9-37 (111)
112 PF13712 Glyco_tranf_2_5: Glyc 23.3 1.9E+02 0.004 31.9 6.4 47 625-678 42-89 (217)
113 PF13923 zf-C3HC4_2: Zinc fing 23.3 41 0.00088 27.0 1.0 24 166-190 16-39 (39)
114 PF13639 zf-RING_2: Ring finge 22.9 23 0.0005 29.0 -0.5 41 150-191 2-44 (44)
115 PRK12380 hydrogenase nickel in 22.5 40 0.00086 33.7 1.0 30 172-201 73-103 (113)
116 PF00097 zf-C3HC4: Zinc finger 22.4 48 0.0011 26.4 1.3 25 166-190 16-41 (41)
117 KOG3103 Rab GTPase interacting 21.5 3.5E+02 0.0075 30.9 7.9 76 1026-1129 155-230 (249)
118 PRK00068 hypothetical protein; 21.5 1.5E+03 0.033 30.8 14.9 43 1105-1147 262-304 (970)
119 PF07787 DUF1625: Protein of u 21.4 1.9E+02 0.0042 32.4 6.2 44 1107-1152 204-248 (248)
120 cd02526 GT2_RfbF_like RfbF is 21.3 1.2E+02 0.0025 32.2 4.3 36 393-436 1-36 (237)
121 COG0601 DppB ABC-type dipeptid 21.3 1.4E+03 0.03 27.0 15.3 76 1067-1155 237-314 (317)
122 PRK09382 ispDF bifunctional 2- 21.2 1.6E+02 0.0035 35.3 5.8 27 642-668 96-122 (378)
123 PTZ00218 40S ribosomal protein 20.7 61 0.0013 28.9 1.6 30 145-177 13-42 (54)
124 PF14471 DUF4428: Domain of un 20.7 51 0.0011 28.8 1.1 29 150-179 1-30 (51)
125 cd02511 Beta4Glucosyltransfera 20.5 1.5E+02 0.0032 32.1 4.9 40 391-439 2-41 (229)
No 1
>PLN02248 cellulose synthase-like protein
Probab=100.00 E-value=8.3e-322 Score=2858.50 Aligned_cols=1086 Identities=73% Similarity=1.271 Sum_probs=1003.2
Q ss_pred cccccccccCCCCcccccCccccccccc---cceeeeEEEcCCCCCCCCCCccccCcccCcccccCccccccccccccCC
Q 001071 49 SGRAHRARSSSGGRYVSMSKDDATEEIS---SEFVTYTVHIPPTPDHQPMSASQTSLNEDTKSEVKPERSFISDTIFTGG 125 (1165)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ytv~ipptpd~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (1165)
.|.++|+|||+||||+|+||||+|++++ +||+|||||||||||||||. +++|+||+||++||||
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 96 (1135)
T PLN02248 30 PQSVKFARRTSSGRYVSLSRDDLDLSGELSSSDYLNYTVHIPPTPDNQPMA-------------GKAEEQYVSNSIFTGG 96 (1135)
T ss_pred CCCCCCCccCCCCcceeccccccccccccccccceeeEEeCCCCCCCcccc-------------cchhhhccccceecCC
Confidence 3788999999999999999999887666 69999999999999999995 4799999999999999
Q ss_pred CCcccccccccccccCC--CC---CCCCCcceeecCCCccccc-------ccccCCccchhhhhhhhcCCCCCCCCCCCc
Q 001071 126 FNSVTRGHVIDCSFEQT--EP---VKSGLICGMKGCDEKVMQN-------KCDCGFKICRECYLECAGNGGGRCPGCKEP 193 (1165)
Q Consensus 126 ~~~~~~~~~~~~~~~~~--~~---~~~g~~C~i~gcd~~~~~d-------~CeC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~ 193 (1165)
||+|||||+|||++|++ || +++|+.|.+.|||+++|+| ||||+|+|||+||.|+.+.| ++||+||++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 175 (1135)
T PLN02248 97 FNSVTRAHLMDKVIESEVSHPQMAGAKGSSCAMPGCDGKVMRDERGEDLLPCECGFKICRDCYIDAVKSG-GICPGCKEP 175 (1135)
T ss_pred CCccchhhhhhcccccccCCcccCCCCCCcccccCcccccccccccccCCcccccchhHHhHhhhhhhcC-CCCCCCccc
Confidence 99999999999999997 87 7789999999999999977 99999999999999999995 899999999
Q ss_pred cccCCCCCccccccccc-cCCCCCCC--ccchhhhhhcccccccccccCCCCCCCCccccccccccccccccccCCCCCC
Q 001071 194 YKDASDGEIEDEVISEE-GDQALPLP--SMADFKLDKRLSLVKSFKAQNHPPDFDHTRWLFETKGTYGYGNALWPKDGYG 270 (1165)
Q Consensus 194 yk~~~~~~~e~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 270 (1165)
||. +|++|++++.+ ..++++.| ++++++++.+++ .+++.++|++||||+|||+|+||+||||||.|++++..
T Consensus 176 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 250 (1135)
T PLN02248 176 YKV---TDLDDEVPDESSGALPLPPPGGSKMDRRLSLMKS--NSLLMRSQTGDFDHNRWLFETKGTYGYGNAVWPKDDGY 250 (1135)
T ss_pred ccc---ccccccccccccccccCCCCCCcccccccccccc--cchhccCCCCCCCCceeeeecccccccccccCcccccc
Confidence 988 66655555433 34556554 778888887776 66788899999999999999999999999999998543
Q ss_pred CCCCCCCCCCCCCCCcCCCCCceEEecccccccchhhHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHHHHH
Q 001071 271 AESGSNGFEHPSDFGDRCRRPLARKIGVSTAIISPYRLIIVTRLAALALFLAWRIRHPNREAMWLWGMSITCEFWFAFSW 350 (1165)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~pl~r~~~i~~~~~~pyR~~i~~~lv~l~~~l~wRi~~~~~~~~~lW~~~~~~Eiwfaf~w 350 (1165)
.+++++ ....+++|++|+||+||++|++++|+|||+++++||++|++||+|||+|++.+++|+|+++++||+||+|+|
T Consensus 251 ~~~~~~--~~~~~~~~~~~~pL~~~~~i~~~il~pyRl~~~~rlv~l~~fl~~Ri~~~~~~~~~~W~~s~~cE~WFaf~W 328 (1135)
T PLN02248 251 GDDGGG--GGPGEFMDKPWRPLTRKVKISAAILSPYRLLILIRLVVLGLFLTWRVRNPNEDAMWLWGMSVVCEIWFAFSW 328 (1135)
T ss_pred CCCCCc--cccccccccCCCCceeeeecCcccccHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHH
Confidence 222211 122378999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred HHhhcccceeeccccchhhHHhhhcCCCCCCCCCCCCCCcccEEEeCCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEc
Q 001071 351 VFDQLPKLCPVNRVTDLTVLKDRFESPNLCNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLS 430 (1165)
Q Consensus 351 iL~q~~kw~Pv~R~t~~d~L~~r~~~~~~~~p~~~~~LP~VDVFV~TaDP~kEPp~vt~nTVLSilA~DYP~~Kls~Yvs 430 (1165)
+|+|++||+||+|.||+|||++|||+|+|+||+|+++||+||||||||||+||||++|+||||||||+|||+|||+||||
T Consensus 329 ll~q~~Kw~Pv~R~t~~~rL~~r~e~~~~~~p~g~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKLacYvS 408 (1135)
T PLN02248 329 LLDQLPKLCPINRATDLAVLKEKFETPSPSNPTGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLACYLS 408 (1135)
T ss_pred HHhccccccccccccCHHHHHHHhccccccCCCCcccCCcceeEeecCCCccCcchHHHHHHHHHhcccccccceeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHhhhhhhhhhhhhcCCCCCChhhhhhhccccccccchhhhHHHHHHHHHHHHHHHHHHhcchhhh
Q 001071 431 DDGGALLTFEALAETASFARIWVPFCRKHNIEPRNPEAYFEQKRNFLKNKIRLDFVRERRRVKREYDEFKVRINSLPESI 510 (1165)
Q Consensus 431 DDG~s~lTf~al~Eaa~FA~~WvPFCkK~~IepR~Pe~YFs~k~~~~~~~~~~~f~~e~~~mKreYeefk~rI~~l~~~~ 510 (1165)
|||||+||||||+|||+|||+||||||||||||||||+||++|.++++++++|+|++|||+|||||||||+|||+|+++|
T Consensus 409 DDGgS~LTf~AL~EAa~FA~~WVPFCrKh~IepRaPe~YFs~~~~~~~~~~~~~F~~d~r~~KreYee~K~RIe~l~~~~ 488 (1135)
T PLN02248 409 DDGGALLTFEAMAEAASFARIWVPFCRKHDIEPRNPESYFSLKRDPTKNKVRPDFVKDRRRVKREYDEFKVRINGLPDSI 488 (1135)
T ss_pred cCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCccchhHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccchHHHHHHHHHHhh-cCCCCCCcccCCcccccCCCCCCCCCcCCCCCCCCCCCccceEEeecCCCCCCCCCCc
Q 001071 511 RRRSDAYNAHEELRAKKKQME-MGGSTAEPVKVPKATWMSDGSHWPGTWTSGEPDHSRGDHAGIIQAMLAPPNAEPVFGV 589 (1165)
Q Consensus 511 ~~~~~~~~~~ee~~~~~~~~~-~~~~~~~~~~~p~~~wm~dgt~wpg~w~~~~~~~~~~dH~~iiqv~l~~~~~~~~~g~ 589 (1165)
++|||+||+.||++.+++++| ++.+|.+++|+||+|||+|||||||+|+++.++|+++|||+||||||++|++|+.+|.
T Consensus 489 ~~rs~~~n~~~e~~~~~~~~~~~~~~~~e~~~~~~~~wm~dgt~wpg~W~~~~~~~~~~dH~~IIqVll~~p~~e~~~g~ 568 (1135)
T PLN02248 489 RRRSDAYNAREEIKAKKKQRESGGGDPSEPLKVPKATWMADGTHWPGTWLSSAPDHSRGDHAGIIQVMLKPPSDEPLMGS 568 (1135)
T ss_pred cccccccchhHHHHhhhhhhhhcccccccccccccceeeccCCcCCCcccCcccCCCCCCCcceeEEeccCCCcccccCc
Confidence 999999999999887766766 3778889999999999999999999999999999999999999999999999999985
Q ss_pred ccCCCCcccccccccccCcEEEEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhh
Q 001071 590 EADGENLIDSTEVDVRLPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLD 669 (1165)
Q Consensus 590 ~~~~~~~~D~~~~~~~lP~LvYvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D 669 (1165)
. ++++.+|++++|++||+||||||||||||+|||||||||||+||||+|||||||||||||||+|||++||+|||||||
T Consensus 569 ~-~~~~~~d~~~~d~~lP~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD 647 (1135)
T PLN02248 569 A-DDENLIDFTDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMD 647 (1135)
T ss_pred c-cccccccccccccccceeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheec
Confidence 4 577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEecCeeecCCCCCCcccchhHHHHHhhccccccCCCceeccccchhhhhhhcCCCCCCcccccCccccchhh
Q 001071 670 RGGDRICYVQFPQRFEGIDPNDRYANHNTVFFDVAMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIK 749 (1165)
Q Consensus 670 ~~g~~vafVQfPQ~F~nid~~Dry~n~~~vFfdi~~~glDG~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~ 749 (1165)
++|+++|||||||+|+|+|++|||+||++||||++|+|+||+|||+||||||+|||+||||++||+.++..+.+++ |
T Consensus 648 ~~g~~vAfVQFPQrF~~I~k~D~Ygn~~~Vffdi~~~GlDGlqGP~YvGTGCffRR~ALYG~~pp~~~~~~~~~~~---~ 724 (1135)
T PLN02248 648 RGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPPRAKEHSGCFGS---C 724 (1135)
T ss_pred CCCCceEEEcCCcccCCCCCCCccCCcceeeeeeeeccccccCCccccccCceeeehhhcCcCCcccccccccccc---c
Confidence 9999999999999999999999999999999999999999999999999999999999999999998766555443 4
Q ss_pred hcccCcccccccccccccccCCCCCCChhhHhhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCC
Q 001071 750 LCLRKPKVAKKVDDEIALPINGDHNDDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPR 829 (1165)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~ 829 (1165)
|+++++++..+...... ..+.. ++++.....++++||+|+.|++|++.++.+|+++.++.++ ++++|+|++..++
T Consensus 725 ~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~rfG~S~~fi~S~~~a~~q~~~~~~~~~~-~~~~~~~~~~~~~ 799 (1135)
T PLN02248 725 KFTKKKKKETSASEPEE---QPDLE-DDDDLELSLLPKRFGNSTMFAASIPVAEFQGRPLADHPSV-KNGRPPGALTVPR 799 (1135)
T ss_pred ccccccccccccccccc---ccccc-ccchhhhhhhhhhhccchhhhhhhHHHhhccccccccccc-ccccccccccccc
Confidence 44433222111110000 00111 2223444568999999999999999889999999988887 9999999999999
Q ss_pred CccchHHHHHHhHhcccccccccccccccccccCcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHh
Q 001071 830 EPLDAATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLR 909 (1165)
Q Consensus 830 ~~~~~~~~~ea~~v~sC~YE~~T~WG~evGw~~gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~R 909 (1165)
+++++++++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+||++++++|.|+||+|+.++++||+|
T Consensus 800 ~~~~~~~l~eA~~V~sC~YE~~T~WG~evG~~YGSvTEDv~TGlrLH~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~R 879 (1135)
T PLN02248 800 EPLDAATVAEAISVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLR 879 (1135)
T ss_pred cCCcHHHHHHHHhhcccccccCCchhhhcCeeecceechHHHHHHHHhcCCceEeCCCChHhhcCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred hhcchhHHHhhhccccccccccccccchhhhhhHHHhhHHHHHHHHHHHHHHHHHhCCcchhcchHHHHHHHHHHHHHHH
Q 001071 910 WATGSVEIFFSRNNALLASRRMKFLQRVAYFNVGMYPFTSMFLLVYCILPAVSLFSGQFIVQSLSISFLIYLLAITVTLC 989 (1165)
Q Consensus 910 WA~G~iQIl~sk~~pL~~~~~Lsl~QRL~Yl~~~lypl~si~~liylllP~l~LltG~~iip~~s~~fliy~lplfls~~ 989 (1165)
||+|++||++++++|++..++|+++|||+|++.++|||.++++++|+++|++||++|++++++.+..|++|+++++++++
T Consensus 880 WA~G~lQIf~sr~~Pll~~~~Lsl~QRL~Yl~~~lypf~Slp~liY~llP~l~LLtGi~~~p~~~~~fl~yll~l~l~~~ 959 (1135)
T PLN02248 880 WATGSVEIFFSRNNALLASRRLKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLIITITLC 959 (1135)
T ss_pred HhhchHHHHhccCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccHHHHHHHHHHHHHHH
Confidence 99999999999999988778999999999999999999999999999999999999999999988899999988888889
Q ss_pred HHHHHHHHhcCCccccccchhhHHHhhhhhhHHHHHHHHHHHHHcCcccceEeCCCCCCCCCCCccccceeEeecccchH
Q 001071 990 MLALLEIKWSGITLHDWWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGDDQFAELYEVKWSFLMV 1069 (1165)
Q Consensus 990 l~slLe~rwsG~sl~~WWr~qr~W~I~~tsa~L~Av~~aLLk~Lgg~~~~F~VTpKg~~~dd~~~~~~ely~f~wSsLli 1069 (1165)
+++++|++|+|+++++|||+||||+|+++++|++|++++++|+|++++++|+||+|.. +++.+++|+++|+|+||++++
T Consensus 960 ~~sllE~~wsGvsl~~WWrnQq~W~I~~tSA~L~A~l~aiLKvLggs~~~F~VTsK~~-~~d~~~~~a~ly~f~wS~L~i 1038 (1135)
T PLN02248 960 LLAVLEIKWSGITLEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSA-GDDEDDEFADLYIVKWTSLMI 1038 (1135)
T ss_pred HHHHHHHhhccccHHHHhhhhheeeehhhHHHHHHHHHHHHHHhcCccccceeCCccc-ccccccccchheecCcchHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 444566789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHHhHHHHHHHHhccCCCceehhHHHHHHHHHHHHHhhhe
Q 001071 1070 PPITIMMVNVIAIAVGVARTMYSPFPQWSRLIGGVFFSLWVLSHLYPFAKGLMGRRGKVSTIVFLWSGLISLIISLLWVY 1149 (1165)
Q Consensus 1070 P~~tLllLnLvaIv~Gi~r~i~~~~~~w~~l~g~l~~~~Wvl~nL~Pf~kgL~gR~~r~P~~v~~~s~ll~~~~sllwv~ 1149 (1165)
|+++++++|++|+++|++|++++.++.|+.+++++|+++|+++|+|||+||||||+||+||||+|||++++++||||||+
T Consensus 1039 P~ttl~llNLvAivvGv~R~i~g~~~~~~~l~g~l~~s~Wvv~~lyPf~kGL~gR~gr~P~iv~v~s~ll~~~~sll~v~ 1118 (1135)
T PLN02248 1039 PPITIMMVNLIAIAVGVSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLLSITISLLWVA 1118 (1135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCeehHHHHHHHHHHHHHHheE
Confidence 99999999999999999999987667888899999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCC-CcccccC
Q 001071 1150 ISPPSGRQD-YMKFQFP 1165 (1165)
Q Consensus 1150 i~~~~~~~~-~~~~~~~ 1165 (1165)
|+||.+.++ .|+||||
T Consensus 1119 ~~~~~~~~~~~~~~~~~ 1135 (1135)
T PLN02248 1119 ISPPSGAAQIGGGFQFP 1135 (1135)
T ss_pred eccccCccccCceecCC
Confidence 999998877 5799997
No 2
>PLN02400 cellulose synthase
Probab=100.00 E-value=4.4e-272 Score=2428.89 Aligned_cols=932 Identities=48% Similarity=0.895 Sum_probs=813.1
Q ss_pred CCCCCcceeecCCCccccc-----cc-ccCCccchhhhhhhhcCCCCCCCCCCCccccCC-----CCCcccccc-ccccC
Q 001071 145 VKSGLICGMKGCDEKVMQN-----KC-DCGFKICRECYLECAGNGGGRCPGCKEPYKDAS-----DGEIEDEVI-SEEGD 212 (1165)
Q Consensus 145 ~~~g~~C~i~gcd~~~~~d-----~C-eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~~~-----~~~~e~~~~-~~~~~ 212 (1165)
+++||+|||||||++++.| || ||+|||||+|||||||||+|+||||||+||||| +||||||+. |++|.
T Consensus 33 ~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~KgsprV~GDeeedd~DDlenE 112 (1085)
T PLN02400 33 NLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHKGSPRVEGDEDEDDVDDLENE 112 (1085)
T ss_pred ccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccccCCCCCCcccccccchhhhhh
Confidence 8899999999999999998 99 999999999999999999999999999999999 888766655 45553
Q ss_pred CCCCC-----Cccchhhhhh------cccccccccccCC--CCCCC----------------------------------
Q 001071 213 QALPL-----PSMADFKLDK------RLSLVKSFKAQNH--PPDFD---------------------------------- 245 (1165)
Q Consensus 213 ~~~~~-----~~~~~~~~~~------~~~~~~~~~~~~~--~~~~~---------------------------------- 245 (1165)
.+... ...+..+-.+ ..++++|+++.+| ++|..
T Consensus 113 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lt~g~~~s~ei~~~~~~~~~~~~~~~~~~~~~~~vh~~p~~d~~~~ 192 (1085)
T PLN02400 113 FNYAQGNGKARHQWQGEDIELSSSSRHESQPIPLLTHGQPVSGEIPCATPDNQSVRTTSGPLGPAERNANSSPYIDPRQP 192 (1085)
T ss_pred hccccccccccccccccCccccCcccccCCCCccccCCcccCCCCCCCCCccccccCCcccccccCCcccccCccCcccC
Confidence 32111 0011101000 0123456666655 33333
Q ss_pred -Ccccccccc--ccccccccccCCCC-------C--------CC--C---CCC--CCCCCCCCCCcCCCCCceEEecccc
Q 001071 246 -HTRWLFETK--GTYGYGNALWPKDG-------Y--------GA--E---SGS--NGFEHPSDFGDRCRRPLARKIGVST 300 (1165)
Q Consensus 246 -~~~~~~~~~--~~~~~~~~~w~~~~-------~--------~~--~---~~~--~~~~~~~~~~~~~~~pl~r~~~i~~ 300 (1165)
+.|.++++| +.|||||++||+|- + .. + +.. +.++++.+++|++++||+||++|++
T Consensus 193 ~~~~~~d~~~~~~~~g~g~~~wkerv~~wk~~~~k~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~pL~~~~~i~~ 272 (1085)
T PLN02400 193 VPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQDKNMMQMTNKYHEGKGGDMEGTGSNGDELQMADDARLPMSRVVPIPS 272 (1085)
T ss_pred CCccccCccccccccccCcHHHHHHHHHHHhhhhhhccccccccccccccCCCCCCCCcccccccccccCCceEEEecCc
Confidence 135677777 78999999999991 0 00 1 100 1122455778999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHHHHHHHhhcccceeeccccchhhHHhhhcCCCCC
Q 001071 301 AIISPYRLIIVTRLAALALFLAWRIRHPNREAMWLWGMSITCEFWFAFSWVFDQLPKLCPVNRVTDLTVLKDRFESPNLC 380 (1165)
Q Consensus 301 ~~~~pyR~~i~~~lv~l~~~l~wRi~~~~~~~~~lW~~~~~~Eiwfaf~wiL~q~~kw~Pv~R~t~~d~L~~r~~~~~~~ 380 (1165)
++|+|||+++++||++|++||+||++|++.+++|+|+++|+||+||+|+|+|+|++||+||+|+||+|||++|||+|+
T Consensus 273 ~~~~~yR~~~~~~lv~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~-- 350 (1085)
T PLN02400 273 SRLTPYRIVIILRLIILGFFLQYRVTHPVKDAYGLWLTSVICEIWFALSWLLDQFPKWYPINRETYLDRLALRYDRDG-- 350 (1085)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred CCCCCCCCCcccEEEeCCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhHHHHHHHHhhhhhhhhhhhhcC
Q 001071 381 NPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGALLTFEALAETASFARIWVPFCRKHN 460 (1165)
Q Consensus 381 ~p~~~~~LP~VDVFV~TaDP~kEPp~vt~nTVLSilA~DYP~~Kls~YvsDDG~s~lTf~al~Eaa~FA~~WvPFCkK~~ 460 (1165)
++++||+||||||||||.||||++|+||||||||+|||+|||+|||||||||+||||||.|||+|||+||||||||+
T Consensus 351 ---~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~Al~Eaa~FA~~WvPFCkK~~ 427 (1085)
T PLN02400 351 ---EPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHN 427 (1085)
T ss_pred ---CcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcchhhhcC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhhhhhccccccccchhhhHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHHHhhcCCCCCCcc
Q 001071 461 IEPRNPEAYFEQKRNFLKNKIRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRAKKKQMEMGGSTAEPV 540 (1165)
Q Consensus 461 IepR~Pe~YFs~k~~~~~~~~~~~f~~e~~~mKreYeefk~rI~~l~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~ 540 (1165)
|||||||+||++|.++++++++|+|++|||+|||||||||+|||+|++ +.+
T Consensus 428 IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~~-----------------------------~~~ 478 (1085)
T PLN02400 428 IEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVA-----------------------------KAQ 478 (1085)
T ss_pred CCcCCHHHHhccCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHh-----------------------------hhc
Confidence 999999999999999999999999999999999999999999999863 245
Q ss_pred cCCcccc-cCCCCCCCCCcCCCCCCCCCCCccceEEeecCCCCCCCCCCcccCCCCcccccccccccCcEEEEEecCCCC
Q 001071 541 KVPKATW-MSDGSHWPGTWTSGEPDHSRGDHAGIIQAMLAPPNAEPVFGVEADGENLIDSTEVDVRLPMLVYVSREKRPG 619 (1165)
Q Consensus 541 ~~p~~~w-m~dgt~wpg~w~~~~~~~~~~dH~~iiqv~l~~~~~~~~~g~~~~~~~~~D~~~~~~~lP~LvYvSREKRPg 619 (1165)
|+|+++| |+|||+|||+| ++|||+|||||++++ |. .|++|+ +||+|||||||||||
T Consensus 479 ~~~~~~~~m~dgt~W~g~~--------~~dHp~iIqVll~~~------~~-------~d~~g~--~LP~LVYVSREKRP~ 535 (1085)
T PLN02400 479 KIPEEGWTMQDGTPWPGNN--------PRDHPGMIQVFLGHS------GG-------LDTDGN--ELPRLVYVSREKRPG 535 (1085)
T ss_pred cCCccccccccCccCCCCC--------CCCCchhhhhhhcCC------CC-------cccccc--cCceeEEEeccCCCC
Confidence 7899999 99999999984 689999999999985 21 356664 899999999999999
Q ss_pred CCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhc-CCCceEEEecCeeecCCCCCCcccchhH
Q 001071 620 YDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDR-GGDRICYVQFPQRFEGIDPNDRYANHNT 698 (1165)
Q Consensus 620 ~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~-~g~~vafVQfPQ~F~nid~~Dry~n~~~ 698 (1165)
|+|||||||||||+||||+|||||||||||||||+|||+++|+|||||||+ .|+++|||||||+|+|+|++|||+|||+
T Consensus 536 ~~Hh~KAGAMNaLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~afVQFPQrF~gi~~~D~Y~n~~~ 615 (1085)
T PLN02400 536 FQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAIGKKTCYVQFPQRFDGIDLHDRYANRNI 615 (1085)
T ss_pred CCcchhhhhhHHHHHHhhhhcCCceEEecccccccCCchhHHhhhhheeccCCCceeEEEeCCcccCCCCCCCCccccee
Confidence 999999999999999999999999999999999999999999999999998 6999999999999999999999999999
Q ss_pred HHHHhhccccccCCCceeccccchhhhhhhcCCCCCCcccc-cCc-cccchhhhcccCccccccc-----------cccc
Q 001071 699 VFFDVAMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEH-HGW-FGSRKIKLCLRKPKVAKKV-----------DDEI 765 (1165)
Q Consensus 699 vFfdi~~~glDG~qgp~yvGTGc~fRR~ALyg~~p~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~-----------~~~~ 765 (1165)
||||++|+|+||+|||+|+||||+|||+||||++||..++. ... .++ |||+.+|+.++++ ..+.
T Consensus 616 vffdi~~~GldGlqGP~YvGTGC~frR~aLYG~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1085)
T PLN02400 616 VFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVK---SCCGSRKKGKGSKKYNIDKKRAMKRTES 692 (1085)
T ss_pred EEeeccccccccCCCccccccCcceeeeeeccCCCcccccccccccccc---cccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999876432 111 112 4454443322111 1112
Q ss_pred ccccCC--CC----CCChhh----HhhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchH
Q 001071 766 ALPING--DH----NDDDAD----IESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAA 835 (1165)
Q Consensus 766 ~~~~~~--~~----~~~~~e----~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~ 835 (1165)
+.++.. ++ ++.++| ++...++++||+|++|++|+. ++.+| ++....+++
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~-~~~~~--------------------~~~~~~~~~ 751 (1085)
T PLN02400 693 NVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATF-MEQGG--------------------IPPSTNPAT 751 (1085)
T ss_pred ccccccccccccccccccchhhhhhhhhhhhhhccccHHHHHHHH-HHhcC--------------------CCCCCCcHH
Confidence 222221 11 111112 223468999999999999994 44332 123346689
Q ss_pred HHHHHhHhcccccccccccccccccccCcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHhhhcchh
Q 001071 836 TVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSV 915 (1165)
Q Consensus 836 ~~~ea~~v~sC~YE~~T~WG~evGw~~gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G~i 915 (1165)
+|+||++||||+||++|+||+||||.|+|+|||+.||++||++||||+||+|++++|.|+||+|+.+++.||+|||+|++
T Consensus 752 ll~eA~~V~sC~YE~~T~WG~evGwiYGSvTED~~TG~~LH~rGWrSvY~~p~r~af~GlAP~~l~d~L~Qr~RWA~G~l 831 (1085)
T PLN02400 752 LLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSI 831 (1085)
T ss_pred HHHHHHHhhccCCccCCchhhhhCeeccceechHHHHHHHHccCCceEecCCCcHhhcCcCCCCHHHHHHHHHHHhhcch
Confidence 99999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred HHHhhhcccccc--ccccccccchhhhhhHHHhhHHHHHHHHHHHHHHHHHhCCcchhcchHHHHHHHHHHHHHHHHHHH
Q 001071 916 EIFFSRNNALLA--SRRMKFLQRVAYFNVGMYPFTSMFLLVYCILPAVSLFSGQFIVQSLSISFLIYLLAITVTLCMLAL 993 (1165)
Q Consensus 916 QIl~sk~~pL~~--~~~Lsl~QRL~Yl~~~lypl~si~~liylllP~l~LltG~~iip~~s~~fliy~lplfls~~l~sl 993 (1165)
||+++++||++. .++|+++|||+|+++++||+.++++++|+++|++||++|++++|..+..++++++.+|++++++++
T Consensus 832 qI~~sr~nPl~~G~~~~L~l~QRL~Yl~~~~y~~~slp~liY~llP~l~LltG~~i~P~vs~~~~~~fi~lf~~~~~~~l 911 (1085)
T PLN02400 832 EILLSRHCPIWYGYNGRLKLLERLAYINTIVYPITSIPLLAYCVLPAFCLITNKFIIPEISNYASMWFILLFISIFATGI 911 (1085)
T ss_pred heeeccCCccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCccchHHHHHHHHHHHHHHHHHH
Confidence 999999999875 378999999999999999999999999999999999999999998766555666667778889999
Q ss_pred HHHHhcCCccccccchhhHHHhhhhhhHHHHHHHHHHHHHcCcccceEeCCCCCCCCCCCccccceeEeecccchHHHHH
Q 001071 994 LEIKWSGITLHDWWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGDDQFAELYEVKWSFLMVPPIT 1073 (1165)
Q Consensus 994 Le~rwsG~sl~~WWr~qr~W~I~~tsa~L~Av~~aLLk~Lgg~~~~F~VTpKg~~~dd~~~~~~ely~f~wSsLliP~~t 1073 (1165)
+|++|+|.++++|||+||||+|+++++|+||++++++|+|++++++|.||+|.. ++ +..++++|+|+||++++|+++
T Consensus 912 LE~~~sG~si~~WWrnQq~w~I~~~Sa~Lfavl~~ilKvLgg~~~~F~VTsK~~-d~--~~~~~ely~f~~s~L~iP~tt 988 (1085)
T PLN02400 912 LELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKAS-DE--DGDFAELYVFKWTSLLIPPTT 988 (1085)
T ss_pred HHHhhcCccHHHhhhccceeeehhhHHHHHHHHHHHHHHhcCCcccceecCCcc-cc--cccccceeeecccchhHHHHH
Confidence 999999999999999999999999999999999999999999999999999987 22 335789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHHhHHHHHHHHhccCCCceehhHHHHHHHHHHHHHhhheecCC
Q 001071 1074 IMMVNVIAIAVGVARTMYSPFPQWSRLIGGVFFSLWVLSHLYPFAKGLMGRRGKVSTIVFLWSGLISLIISLLWVYISPP 1153 (1165)
Q Consensus 1074 LllLnLvaIv~Gi~r~i~~~~~~w~~l~g~l~~~~Wvl~nL~Pf~kgL~gR~~r~P~~v~~~s~ll~~~~sllwv~i~~~ 1153 (1165)
++++||+|+++|+++++.++++.|+.+++++|+++|+++|+|||+||||+|++|+|+||++||++|+++||||||+|+||
T Consensus 989 l~llNlvaiv~Gv~~~i~~g~~~~g~l~~~~~~~~wvvv~l~Pf~kgL~gR~~r~P~~v~~~s~lla~~~~l~~v~~~~~ 1068 (1085)
T PLN02400 989 VLLVNLVGIVAGVSYAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPF 1068 (1085)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHheecccc
Confidence 99999999999999999887788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCc
Q 001071 1154 SGRQDYM 1160 (1165)
Q Consensus 1154 ~~~~~~~ 1160 (1165)
+.+++.-
T Consensus 1069 ~~~~~~~ 1075 (1085)
T PLN02400 1069 VSDTTKA 1075 (1085)
T ss_pred ccCCCCc
Confidence 9887654
No 3
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=100.00 E-value=3.3e-271 Score=2420.45 Aligned_cols=932 Identities=50% Similarity=0.932 Sum_probs=816.4
Q ss_pred CCCCCcceeecCCCccccc-----cc-ccCCccchhhhhhhhcCCCCCCCCCCCccccCC-----CCCccccc--ccccc
Q 001071 145 VKSGLICGMKGCDEKVMQN-----KC-DCGFKICRECYLECAGNGGGRCPGCKEPYKDAS-----DGEIEDEV--ISEEG 211 (1165)
Q Consensus 145 ~~~g~~C~i~gcd~~~~~d-----~C-eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~~~-----~~~~e~~~--~~~~~ 211 (1165)
+++||+||||||+++++.| || ||+|||||+|||||||||+|+||||||+||||| +||||||+ +|+++
T Consensus 14 ~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~gDeeed~~~dDle~ 93 (1079)
T PLN02638 14 HGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILGDEEEDGDADDGAS 93 (1079)
T ss_pred ccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCccccccCcchhhhh
Confidence 7899999999999999988 99 999999999999999999999999999999999 88876665 45554
Q ss_pred CCCCCC----------Cccchhhhhh--------------cccccccccccCC--CCCCC--------------------
Q 001071 212 DQALPL----------PSMADFKLDK--------------RLSLVKSFKAQNH--PPDFD-------------------- 245 (1165)
Q Consensus 212 ~~~~~~----------~~~~~~~~~~--------------~~~~~~~~~~~~~--~~~~~-------------------- 245 (1165)
..+... -++++++|+. ..+.++|+++++| +++..
T Consensus 94 ef~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (1079)
T PLN02638 94 DFNYPSSNQDQKQKIAERMLSWRMNSGRGEDVGAPNYDKEVSHNHIPLLTNGQSVSGELSAASPERLSMASPGAGGKRIP 173 (1079)
T ss_pred hhccccccccchhHHHHHHhhhhcccCcCcccccccccccCCCCCCcccccCccccCccCCCCCccccccCccccCCccc
Confidence 322110 0344455542 1234567777765 33322
Q ss_pred ---------Ccccccccc--ccccccccccCCC-------CC--------C----CCCCC----CCC---CCCCCCCcCC
Q 001071 246 ---------HTRWLFETK--GTYGYGNALWPKD-------GY--------G----AESGS----NGF---EHPSDFGDRC 288 (1165)
Q Consensus 246 ---------~~~~~~~~~--~~~~~~~~~w~~~-------~~--------~----~~~~~----~~~---~~~~~~~~~~ 288 (1165)
+.|.++++| ++|||||++||+| .+ . ++.|+ +.+ .++.++++++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~wk~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1079)
T PLN02638 174 YASDVNQSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGGDIDASTDVLMDDALLNDEA 253 (1079)
T ss_pred ccccccccCCcccCCccccccccccccHHHHHHHHHHHhcccccccccccccccccccCcCCCCCccccccccccccccC
Confidence 346788888 8999999999988 00 0 00111 111 2355778999
Q ss_pred CCCceEEecccccccchhhHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHHHHHHHhhcccceeeccccchh
Q 001071 289 RRPLARKIGVSTAIISPYRLIIVTRLAALALFLAWRIRHPNREAMWLWGMSITCEFWFAFSWVFDQLPKLCPVNRVTDLT 368 (1165)
Q Consensus 289 ~~pl~r~~~i~~~~~~pyR~~i~~~lv~l~~~l~wRi~~~~~~~~~lW~~~~~~Eiwfaf~wiL~q~~kw~Pv~R~t~~d 368 (1165)
++||+||++|++++|+|||+++++||++|++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|+||+|
T Consensus 254 ~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf~Wll~q~~Kw~Pv~R~t~~d 333 (1079)
T PLN02638 254 RQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFALSWILDQFPKWLPVNRETYLD 333 (1079)
T ss_pred CCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHhccccccccccccCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhcCCCCCCCCCCCCCCcccEEEeCCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhHHHHHHHHhh
Q 001071 369 VLKDRFESPNLCNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGALLTFEALAETASF 448 (1165)
Q Consensus 369 ~L~~r~~~~~~~~p~~~~~LP~VDVFV~TaDP~kEPp~vt~nTVLSilA~DYP~~Kls~YvsDDG~s~lTf~al~Eaa~F 448 (1165)
||++|||+|+ ++++||+||||||||||.||||++|+||||||||+|||+|||+|||||||||+||||||.|||+|
T Consensus 334 rL~~r~~~~~-----~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~F 408 (1079)
T PLN02638 334 RLALRYDREG-----EPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEF 408 (1079)
T ss_pred HHHHHhccCC-----CcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHHHHHHHHHHHHH
Confidence 9999998753 36899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhcCCCCCChhhhhhhccccccccchhhhHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHH
Q 001071 449 ARIWVPFCRKHNIEPRNPEAYFEQKRNFLKNKIRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRAKKK 528 (1165)
Q Consensus 449 A~~WvPFCkK~~IepR~Pe~YFs~k~~~~~~~~~~~f~~e~~~mKreYeefk~rI~~l~~~~~~~~~~~~~~ee~~~~~~ 528 (1165)
||+||||||||||||||||+||++|.++++++++|+|++||++|||||||||+|||++++
T Consensus 409 A~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a-------------------- 468 (1079)
T PLN02638 409 ARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVA-------------------- 468 (1079)
T ss_pred HHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 999999999999999999999999999999999999999999999999999999998853
Q ss_pred HhhcCCCCCCcccCCcccc-cCCCCCCCCCcCCCCCCCCCCCccceEEeecCCCCCCCCCCcccCCCCcccccccccccC
Q 001071 529 QMEMGGSTAEPVKVPKATW-MSDGSHWPGTWTSGEPDHSRGDHAGIIQAMLAPPNAEPVFGVEADGENLIDSTEVDVRLP 607 (1165)
Q Consensus 529 ~~~~~~~~~~~~~~p~~~w-m~dgt~wpg~w~~~~~~~~~~dH~~iiqv~l~~~~~~~~~g~~~~~~~~~D~~~~~~~lP 607 (1165)
+.+++|+++| |+||++|||+| ++|||+||||+++++ |. .|.+|+ +||
T Consensus 469 ---------~~~~~p~~~~~m~dgt~W~g~~--------~~dHp~IiqVll~~~------~~-------~d~~g~--~lP 516 (1079)
T PLN02638 469 ---------KAQKVPEEGWIMQDGTPWPGNN--------TRDHPGMIQVFLGHS------GG-------LDTEGN--ELP 516 (1079)
T ss_pred ---------hccccCCccccccCCccCCCCC--------CCCCHHHHHHHhcCC------Cc-------cccccc--ccc
Confidence 3467899989 99999999996 689999999999985 21 255564 899
Q ss_pred cEEEEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhc-CCCceEEEecCeeecC
Q 001071 608 MLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDR-GGDRICYVQFPQRFEG 686 (1165)
Q Consensus 608 ~LvYvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~-~g~~vafVQfPQ~F~n 686 (1165)
+|||||||||||++|||||||||+|+||||+|||||||||||||||+|||++||+|||||||+ .|+++|||||||+|+|
T Consensus 517 ~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmYiNns~alr~AMCf~lDp~~g~~vafVQFPQrF~~ 596 (1079)
T PLN02638 517 RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDG 596 (1079)
T ss_pred ceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeecccCcccCchHHHHHhhhhhcCcccCCeeEEecCCcccCC
Confidence 999999999999999999999999999999999999999999999999999999999999998 6999999999999999
Q ss_pred CCCCCcccchhHHHHHhhccccccCCCceeccccchhhhhhhcCCCCCCccccc-Cccccchhhhccc-Ccccccccc--
Q 001071 687 IDPNDRYANHNTVFFDVAMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHH-GWFGSRKIKLCLR-KPKVAKKVD-- 762 (1165)
Q Consensus 687 id~~Dry~n~~~vFfdi~~~glDG~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~-- 762 (1165)
+|++|||+||++||||++|+|+||+|||+||||||+|||+||||++||+..+.. ....+ |||+. +|+.++.++
T Consensus 597 i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~ALYG~~p~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 673 (1079)
T PLN02638 597 IDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKPKHKKPGFLS---SLCGGSRKKSSKSSKKG 673 (1079)
T ss_pred CCCCCcccccceeeeccccccccccCCccccccCcceeehhhcCcCCccccccccccccc---ccccccccccccccchh
Confidence 999999999999999999999999999999999999999999999999875311 11111 44443 333211110
Q ss_pred ---------cccccccCC--CC----CC--Chhh----HhhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCC
Q 001071 763 ---------DEIALPING--DH----ND--DDAD----IESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRP 821 (1165)
Q Consensus 763 ---------~~~~~~~~~--~~----~~--~~~e----~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~ 821 (1165)
.....++.. +. +. .+++ .+...++++||+|++|++|+ +++++|.+
T Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~S~~fi~S~-~~~~~~~~------------- 739 (1079)
T PLN02638 674 SDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVAST-LMENGGVP------------- 739 (1079)
T ss_pred hccccccccccccccccccccccccccccccchhhhhhhhhhhhhhhccccHHHHHHH-HHhhcCCC-------------
Confidence 000011110 00 00 0011 12246889999999999999 56776532
Q ss_pred CCCCCCCCCccchHHHHHHhHhcccccccccccccccccccCcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHH
Q 001071 822 PGSLAVPREPLDAATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLT 901 (1165)
Q Consensus 822 ~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGw~~gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~ 901 (1165)
....++++|+||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+||+|++++|.|+||+|+.
T Consensus 740 -------~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWrSvY~~P~r~AF~GlAP~~l~ 812 (1079)
T PLN02638 740 -------QSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLS 812 (1079)
T ss_pred -------CCCCcHHHHHHHHhhccCCCccCCchhhhcCeeecceecHHHHHHHHHcCCCcEEecCCCchHhcCcCCCCHH
Confidence 2335689999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred HHHHHhHhhhcchhHHHhhhcccccc--ccccccccchhhhhhHHHhhHHHHHHHHHHHHHHHHHhCCcchhcchHHHHH
Q 001071 902 DRLHQVLRWATGSVEIFFSRNNALLA--SRRMKFLQRVAYFNVGMYPFTSMFLLVYCILPAVSLFSGQFIVQSLSISFLI 979 (1165)
Q Consensus 902 ~~l~QR~RWA~G~iQIl~sk~~pL~~--~~~Lsl~QRL~Yl~~~lypl~si~~liylllP~l~LltG~~iip~~s~~fli 979 (1165)
+++.||+|||+|++||+++|++|++. .++|+++|||+|++.++||++++++++|+++|++||++|++++|..+..+++
T Consensus 813 d~L~Qr~RWA~G~lqI~fsr~nPl~~G~~~rL~l~QRL~Yl~~~~yp~~sip~liY~llP~l~Ll~G~~i~P~vs~~~~~ 892 (1079)
T PLN02638 813 DRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYVNTTIYPITSIPLLLYCTLPAVCLLTGKFIIPQISNIASI 892 (1079)
T ss_pred HHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCccchHHH
Confidence 99999999999999999999999875 4789999999999999999999999999999999999999999977666556
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccchhhHHHhhhhhhHHHHHHHHHHHHHcCcccceEeCCCCCCCCCCCccccce
Q 001071 980 YLLAITVTLCMLALLEIKWSGITLHDWWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGDDQFAEL 1059 (1165)
Q Consensus 980 y~lplfls~~l~slLe~rwsG~sl~~WWr~qr~W~I~~tsa~L~Av~~aLLk~Lgg~~~~F~VTpKg~~~dd~~~~~~el 1059 (1165)
+++.+|+++++++++|++|+|.++++|||+||||+|+++++|+||++++++|+|++++++|.||+|.. + .++.++++
T Consensus 893 ~f~~lfl~~~~~~llE~~wsG~si~~WWrnQr~w~I~~tSa~lfavl~~iLK~Lggs~~~F~VTsK~~-d--~~~~~~el 969 (1079)
T PLN02638 893 WFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKAS-D--EDGDFAEL 969 (1079)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHhhhhhheehhhhHHHHHHHHHHHHHHHccCcccceeccccc-c--ccccccce
Confidence 66678889999999999999999999999999999999999999999999999999999999999987 2 34467899
Q ss_pred eEeecccchHHHHHHHHHHHHHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHHhHHHHHHHHhccCCCceehhHHHHHHH
Q 001071 1060 YEVKWSFLMVPPITIMMVNVIAIAVGVARTMYSPFPQWSRLIGGVFFSLWVLSHLYPFAKGLMGRRGKVSTIVFLWSGLI 1139 (1165)
Q Consensus 1060 y~f~wSsLliP~~tLllLnLvaIv~Gi~r~i~~~~~~w~~l~g~l~~~~Wvl~nL~Pf~kgL~gR~~r~P~~v~~~s~ll 1139 (1165)
|+|+||++++|+++|+++||+|+++|+++++.+++..|+++++++|+++|+++|+|||+||||||+||+||||+|||+++
T Consensus 970 y~f~wS~l~iP~ttl~iiNlvaiv~g~~~~~~~g~~~~~~~~~~~~~~~wvv~~l~Pf~kgl~gR~~r~P~~v~v~s~ll 1049 (1079)
T PLN02638 970 YMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILL 1049 (1079)
T ss_pred eEecceehhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCeeehHHHHHH
Confidence 99999999999999999999999999999998777789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhheecCCCCCCCCc
Q 001071 1140 SLIISLLWVYISPPSGRQDYM 1160 (1165)
Q Consensus 1140 ~~~~sllwv~i~~~~~~~~~~ 1160 (1165)
+++||||||+|+||+.+.++-
T Consensus 1050 ~~~~~l~~v~~~~~~~~~~~~ 1070 (1079)
T PLN02638 1050 ASIFSLLWVRIDPFTTRVTGP 1070 (1079)
T ss_pred HHHHHHHHheecccccCCCCc
Confidence 999999999999999886643
No 4
>PLN02436 cellulose synthase A
Probab=100.00 E-value=2.1e-270 Score=2404.94 Aligned_cols=927 Identities=50% Similarity=0.934 Sum_probs=811.7
Q ss_pred CCCCCcceeecCCCccccc-----cc-ccCCccchhhhhhhhcCCCCCCCCCCCccccCC-----CCCcccccc-ccccC
Q 001071 145 VKSGLICGMKGCDEKVMQN-----KC-DCGFKICRECYLECAGNGGGRCPGCKEPYKDAS-----DGEIEDEVI-SEEGD 212 (1165)
Q Consensus 145 ~~~g~~C~i~gcd~~~~~d-----~C-eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~~~-----~~~~e~~~~-~~~~~ 212 (1165)
+.++|+||||||+++++.| || ||+|||||+|||||+|||+|+||||||+||||| +||||||+. |.+++
T Consensus 33 ~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~kgs~~~~~d~ee~~~dd~e~e 112 (1094)
T PLN02436 33 ELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDEEEDDIDDLENE 112 (1094)
T ss_pred ccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCCCcCCccccccchhhhhh
Confidence 7899999999999999988 99 999999999999999999999999999999999 777655544 44443
Q ss_pred CCCC----C-----Cccchhhhhh------------------cccccccccccCC-CCCCC--C----------------
Q 001071 213 QALP----L-----PSMADFKLDK------------------RLSLVKSFKAQNH-PPDFD--H---------------- 246 (1165)
Q Consensus 213 ~~~~----~-----~~~~~~~~~~------------------~~~~~~~~~~~~~-~~~~~--~---------------- 246 (1165)
.+.+ + -++++++|+. ....++++++.+| +++.. |
T Consensus 113 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (1094)
T PLN02436 113 FDYGNNGLDPEQVAEAMLSSRLNTGRHSNVSGIATPSELDSAPPGSQIPLLTYGEEDVEISSDRHALIVPPSTGHGNRVH 192 (1094)
T ss_pred hcCcccccchHHHHHHHhhhhcccCccccccccccccccccCCCcCCCcccccCcccCccCCcccccccCCccccccccc
Confidence 2211 0 0334444431 0023456666655 33332 1
Q ss_pred ------------cccccccc--ccccccccccCCCC-------C-------CC-C----CC--CCCCCCCCCCCcCCCCC
Q 001071 247 ------------TRWLFETK--GTYGYGNALWPKDG-------Y-------GA-E----SG--SNGFEHPSDFGDRCRRP 291 (1165)
Q Consensus 247 ------------~~~~~~~~--~~~~~~~~~w~~~~-------~-------~~-~----~~--~~~~~~~~~~~~~~~~p 291 (1165)
.|.++++| +.|||||++||+|- + +. + +. +..+.++.+++|++++|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~wkerv~~wk~kq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 272 (1094)
T PLN02436 193 PMPFPDSSASLQPRPMVPQKDLAVYGYGSVAWKDRMEEWKKKQNEKLQVVKHEGGNDGGNNDGDELDDPDLPMMDEGRQP 272 (1094)
T ss_pred ccccccccccCCCccCCccccccccccCcHHHHHHHHHHHhhhhhcccccccccccccCCCCCCCCCCcccccccccCCC
Confidence 34677888 78999999999981 0 00 0 11 11122345668999999
Q ss_pred ceEEecccccccchhhHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHHHHHHHhhcccceeeccccchhhHH
Q 001071 292 LARKIGVSTAIISPYRLIIVTRLAALALFLAWRIRHPNREAMWLWGMSITCEFWFAFSWVFDQLPKLCPVNRVTDLTVLK 371 (1165)
Q Consensus 292 l~r~~~i~~~~~~pyR~~i~~~lv~l~~~l~wRi~~~~~~~~~lW~~~~~~Eiwfaf~wiL~q~~kw~Pv~R~t~~d~L~ 371 (1165)
|+||++|++++|+|||+++++||++|++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|+||+|||+
T Consensus 273 L~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~WFaf~Wll~Q~~Kw~Pv~R~t~~drL~ 352 (1094)
T PLN02436 273 LSRKLPIPSSKINPYRMIIILRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLS 352 (1094)
T ss_pred ceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHHccCcccccccceeCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCCCCCCCCCcccEEEeCCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhHHHHHHHHhhhhh
Q 001071 372 DRFESPNLCNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGALLTFEALAETASFARI 451 (1165)
Q Consensus 372 ~r~~~~~~~~p~~~~~LP~VDVFV~TaDP~kEPp~vt~nTVLSilA~DYP~~Kls~YvsDDG~s~lTf~al~Eaa~FA~~ 451 (1165)
+|||+|+ ++++||+||||||||||.||||++|+||||||||+|||+|||+|||||||||+||||||.|||+|||+
T Consensus 353 ~r~~~~~-----~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~ 427 (1094)
T PLN02436 353 LRYEKEG-----KPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARK 427 (1094)
T ss_pred HHhccCC-----CcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHh
Confidence 9998654 46899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCCChhhhhhhccccccccchhhhHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHHHhh
Q 001071 452 WVPFCRKHNIEPRNPEAYFEQKRNFLKNKIRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRAKKKQME 531 (1165)
Q Consensus 452 WvPFCkK~~IepR~Pe~YFs~k~~~~~~~~~~~f~~e~~~mKreYeefk~rI~~l~~~~~~~~~~~~~~ee~~~~~~~~~ 531 (1165)
||||||||||||||||+||++|.++++++++|+|++|||+|||||||||+|||+|++
T Consensus 428 WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~----------------------- 484 (1094)
T PLN02436 428 WVPFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFKVKINALVA----------------------- 484 (1094)
T ss_pred hcccccccCCCcCCHHHHhhccCCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHh-----------------------
Confidence 999999999999999999999999999999999999999999999999999999864
Q ss_pred cCCCCCCcccCCcccc-cCCCCCCCCCcCCCCCCCCCCCccceEEeecCCCCCCCCCCcccCCCCcccccccccccCcEE
Q 001071 532 MGGSTAEPVKVPKATW-MSDGSHWPGTWTSGEPDHSRGDHAGIIQAMLAPPNAEPVFGVEADGENLIDSTEVDVRLPMLV 610 (1165)
Q Consensus 532 ~~~~~~~~~~~p~~~w-m~dgt~wpg~w~~~~~~~~~~dH~~iiqv~l~~~~~~~~~g~~~~~~~~~D~~~~~~~lP~Lv 610 (1165)
.++++|+++| |+|||+|||+| ++|||+||||||++++ . .|++|+ +||+||
T Consensus 485 ------~~~~vp~~~~~m~dgt~W~g~~--------~~dHp~IIqVll~~~~------~-------~d~~g~--~LP~LV 535 (1094)
T PLN02436 485 ------TAQKVPEDGWTMQDGTPWPGNN--------VRDHPGMIQVFLGHSG------V-------RDVEGN--ELPRLV 535 (1094)
T ss_pred ------hcccCchhhhhhccCccCCCCC--------CCCCccceEEEecCCC------C-------cccccc--cCceEE
Confidence 1357899999 99999999985 6899999999999852 1 255664 899999
Q ss_pred EEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhc-CCCceEEEecCeeecCCCC
Q 001071 611 YVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDR-GGDRICYVQFPQRFEGIDP 689 (1165)
Q Consensus 611 YvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~-~g~~vafVQfPQ~F~nid~ 689 (1165)
||||||||||+|||||||||||+||||+|||||||||||||||+|||+++|+|||||||+ .|+++|||||||+|+|+|+
T Consensus 536 YVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfllD~~~g~~~afVQFPQrF~gi~k 615 (1094)
T PLN02436 536 YVSREKRPGFDHHKKAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDR 615 (1094)
T ss_pred EEecccCCCCCcchhhhhhhhhhhhheeecCCceEEecccccccCchHHHHHhhhhhcCCccCCeeEEEcCCcccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999998 6899999999999999999
Q ss_pred CCcccchhHHHHHhhccccccCCCceeccccchhhhhhhcCCCCCCcccccC--------ccccchhhhcccCccccccc
Q 001071 690 NDRYANHNTVFFDVAMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHG--------WFGSRKIKLCLRKPKVAKKV 761 (1165)
Q Consensus 690 ~Dry~n~~~vFfdi~~~glDG~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 761 (1165)
+|||+||++||||++|+|+||+|||+|+||||+|||+||||++||+..+... +|| ||||.+||+++++
T Consensus 616 ~D~Y~n~~~vffdi~~~GlDGlqGP~YvGTGC~frR~aLYG~~pp~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 691 (1094)
T PLN02436 616 HDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPKKKKPPGKTCNCWPKWCC----LCCGSRKKKKKKK 691 (1094)
T ss_pred CCcccccceEeeeccccccccCCCccccccCceeeeeeeeccCCccccccccccccccccccc----ccccccccccccc
Confidence 9999999999999999999999999999999999999999999987644211 122 4555544432221
Q ss_pred c--------cccccccCC--CC----CCChh----hHhhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCC
Q 001071 762 D--------DEIALPING--DH----NDDDA----DIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPG 823 (1165)
Q Consensus 762 ~--------~~~~~~~~~--~~----~~~~~----e~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g 823 (1165)
. .....+++. ++ ++.++ .+....++++||+|++|++|+. .+.+|
T Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~-~~~~~----------------- 753 (1094)
T PLN02436 692 SKEKKKKKNREASKQIHALENIEEGIEGSNNEKSSETPQLKLEKKFGQSPVFVASTL-LENGG----------------- 753 (1094)
T ss_pred ccccccccccccccccccccccccccccccchhhhhhhhhhHHhhhcccHHHHHHHH-HhhcC-----------------
Confidence 1 011111111 11 11111 1223568899999999999993 44433
Q ss_pred CCCCCCCccchHHHHHHhHhcccccccccccccccccccCcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHH
Q 001071 824 SLAVPREPLDAATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDR 903 (1165)
Q Consensus 824 ~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGw~~gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~ 903 (1165)
+|+++.++++|+||++||||+||++|+||+||||.|+|+|||+.||++||++||||+||+|++++|.|+||+|+.++
T Consensus 754 ---~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGwiYGSvTEDv~TG~rLH~rGWrSvY~~P~r~AF~GlAP~~L~d~ 830 (1094)
T PLN02436 754 ---VPRNASPASLLREAIQVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDR 830 (1094)
T ss_pred ---CCCCCCcHHHHHHHHHhhcCCCcccChhhHhhCeeccceecHHHHHHHHHcCCCceEeCCCCchhhcCcCCCCHHHH
Confidence 34556788999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HHHhHhhhcchhHHHhhhcccccc--ccccccccchhhhhhHHHhhHHHHHHHHHHHHHHHHHhCCcchhcchHHHHHHH
Q 001071 904 LHQVLRWATGSVEIFFSRNNALLA--SRRMKFLQRVAYFNVGMYPFTSMFLLVYCILPAVSLFSGQFIVQSLSISFLIYL 981 (1165)
Q Consensus 904 l~QR~RWA~G~iQIl~sk~~pL~~--~~~Lsl~QRL~Yl~~~lypl~si~~liylllP~l~LltG~~iip~~s~~fliy~ 981 (1165)
+.||+|||+|++||+++|++|+++ .++|+|+|||+|++.++||++++++++|+++|++||++|++++|..+..+++++
T Consensus 831 L~Qr~RWA~G~lQIffsr~nPl~~g~~~~L~l~QRL~Yl~~~ly~l~Slp~liY~~lP~l~LL~G~~i~P~vs~~~~~~f 910 (1094)
T PLN02436 831 LHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLIVYCTLPAICLLTGKFIVPEISNYASILF 910 (1094)
T ss_pred HHHHHHHhhcceeeeeccCCcchhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCccchHHHHHH
Confidence 999999999999999999999974 468999999999999999999999999999999999999999998766666666
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccccchhhHHHhhhhhhHHHHHHHHHHHHHcCcccceEeCCCCCCCCCCCccccceeE
Q 001071 982 LAITVTLCMLALLEIKWSGITLHDWWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGDDQFAELYE 1061 (1165)
Q Consensus 982 lplfls~~l~slLe~rwsG~sl~~WWr~qr~W~I~~tsa~L~Av~~aLLk~Lgg~~~~F~VTpKg~~~dd~~~~~~ely~ 1061 (1165)
+.+|+++++++++|++|+|.++++|||+||||+|+++++|+||++++++|+|++++++|.||+|.. + ++.++++|+
T Consensus 911 i~lfls~~~~~lLE~~wsG~si~~WWrnQq~w~I~~tSa~Lfavl~~iLKvLggs~~~F~VTsK~~-d---~~~~a~ly~ 986 (1094)
T PLN02436 911 MALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVNTNFTVTSKAA-D---DGEFSELYL 986 (1094)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcccceeccccc-c---cccccceee
Confidence 678889999999999999999999999999999999999999999999999999999999999987 2 235778999
Q ss_pred eecccchHHHHHHHHHHHHHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHHhHHHHHHHHhccCCCceehhHHHHHHHHH
Q 001071 1062 VKWSFLMVPPITIMMVNVIAIAVGVARTMYSPFPQWSRLIGGVFFSLWVLSHLYPFAKGLMGRRGKVSTIVFLWSGLISL 1141 (1165)
Q Consensus 1062 f~wSsLliP~~tLllLnLvaIv~Gi~r~i~~~~~~w~~l~g~l~~~~Wvl~nL~Pf~kgL~gR~~r~P~~v~~~s~ll~~ 1141 (1165)
|+||++++|+++++++|++|+++|+++++.++++.|+.+++++|+++|+++|+|||+||||+|++|+||||+|||++|++
T Consensus 987 f~~S~L~iP~tti~ilNlvaiv~Gi~~~i~~g~~~~g~l~~~l~~~~wvvv~lyPf~kgL~gr~~r~P~~v~v~s~lla~ 1066 (1094)
T PLN02436 987 FKWTSLLIPPTTLLIINIIGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGLLGKQDRMPTIILVWSILLAS 1066 (1094)
T ss_pred ecceeHhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCeeehHHHHHHHH
Confidence 99999999999999999999999999999887888999999999999999999999999999999999999999999999
Q ss_pred HHHHhhheecCCCCCC
Q 001071 1142 IISLLWVYISPPSGRQ 1157 (1165)
Q Consensus 1142 ~~sllwv~i~~~~~~~ 1157 (1165)
+||||||+||||+.+.
T Consensus 1067 ~~~l~~v~~~~~~~~~ 1082 (1094)
T PLN02436 1067 ILTLLWVRVNPFVSKG 1082 (1094)
T ss_pred HHHHHHeeeccccCCC
Confidence 9999999999999873
No 5
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=100.00 E-value=1.9e-267 Score=2382.75 Aligned_cols=929 Identities=49% Similarity=0.900 Sum_probs=805.6
Q ss_pred CCCCCCCcceeecCCCccccc-----cc-ccCCccchhhhhhhhcCCCCCCCCCCCccccCC-----CCCcc--cccccc
Q 001071 143 EPVKSGLICGMKGCDEKVMQN-----KC-DCGFKICRECYLECAGNGGGRCPGCKEPYKDAS-----DGEIE--DEVISE 209 (1165)
Q Consensus 143 ~~~~~g~~C~i~gcd~~~~~d-----~C-eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~~~-----~~~~e--~~~~~~ 209 (1165)
|.+.++|+|||||++++++.| || ||+|||||+|||||+|||+|+||||||+||||| +|||| ++.+|.
T Consensus 10 ~~~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~~~~~~~d~~~~~~~dd~ 89 (1044)
T PLN02915 10 RQSADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCPRVEGDDEEGNDMDDF 89 (1044)
T ss_pred ccCCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCccCCccccccchhh
Confidence 447899999999999999988 99 999999999999999999999999999999998 67632 333345
Q ss_pred ccCCCCCC----Cccchhhhhh-------cc--cccccccccCCCCCCCCccccccccccccccccccCCCC--------
Q 001071 210 EGDQALPL----PSMADFKLDK-------RL--SLVKSFKAQNHPPDFDHTRWLFETKGTYGYGNALWPKDG-------- 268 (1165)
Q Consensus 210 ~~~~~~~~----~~~~~~~~~~-------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-------- 268 (1165)
++..+.+. ..+.+++|+. .. +.+.++++. +++.. .+.++++|. ||||++||+|-
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~--~~g~~~wk~r~~~wk~~~~ 164 (1044)
T PLN02915 90 EDEFQIKSPQDHEPVHQNVFAGSENGDYNAQQWRPGGPAFSS--TGSVA-GKDLEAERE--GYGNAEWKDRVDKWKTRQE 164 (1044)
T ss_pred hhhhccccccccchhhhhhccCCCCccccccccCCCCccccC--CCCcC-CCCcCcccc--CcCCHHHHHHHHHHHhhhh
Confidence 44322111 0133334431 11 123444433 33332 226666655 99999999991
Q ss_pred -----CCC--CCCCCCCCCCCCCCcCCCCCceEEecccccccchhhHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHH
Q 001071 269 -----YGA--ESGSNGFEHPSDFGDRCRRPLARKIGVSTAIISPYRLIIVTRLAALALFLAWRIRHPNREAMWLWGMSIT 341 (1165)
Q Consensus 269 -----~~~--~~~~~~~~~~~~~~~~~~~pl~r~~~i~~~~~~pyR~~i~~~lv~l~~~l~wRi~~~~~~~~~lW~~~~~ 341 (1165)
+.. +.++.+++++.++++++++||+||++|++++|+|||+++++||++|++||+||++|++.+++|+|+++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~ 244 (1044)
T PLN02915 165 KRGLVNKDDSDDGDDKGDEEEYLLAEARQPLWRKVPIPSSKINPYRIVIVLRLVILCFFFRFRILTPAYDAYPLWLISVI 244 (1044)
T ss_pred hhccccccccCCCCCCCCcccccccccCCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCcCCCchHHHHHHHH
Confidence 000 0011122335577899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccceeeccccchhhHHhhhcCCCCCCCCCCCCCCcccEEEeCCCCCCCChHHHHHHHHHHHcCCCC
Q 001071 342 CEFWFAFSWVFDQLPKLCPVNRVTDLTVLKDRFESPNLCNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYP 421 (1165)
Q Consensus 342 ~Eiwfaf~wiL~q~~kw~Pv~R~t~~d~L~~r~~~~~~~~p~~~~~LP~VDVFV~TaDP~kEPp~vt~nTVLSilA~DYP 421 (1165)
||+||+|+|+|+|++||+||+|+||+|||++|||+|++ +++||+||||||||||.||||++|+||||||||+|||
T Consensus 245 cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~e~~~~-----~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP 319 (1044)
T PLN02915 245 CEIWFALSWILDQFPKWFPINRETYLDRLSMRFERDGE-----PNRLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYP 319 (1044)
T ss_pred HHHHHHHHHHHccCccccccccccCHHHHHHHhccCCC-----cccCCceeeEeccCCcccCcchHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999997643 5789999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCchhhHHHHHHHHhhhhhhhhhhhhcCCCCCChhhhhhhccccccccchhhhHHHHHHHHHHHHHHHH
Q 001071 422 VEKLACYLSDDGGALLTFEALAETASFARIWVPFCRKHNIEPRNPEAYFEQKRNFLKNKIRLDFVRERRRVKREYDEFKV 501 (1165)
Q Consensus 422 ~~Kls~YvsDDG~s~lTf~al~Eaa~FA~~WvPFCkK~~IepR~Pe~YFs~k~~~~~~~~~~~f~~e~~~mKreYeefk~ 501 (1165)
+|||+|||||||||+||||||+|||+|||+||||||||||||||||+||++|.++++++++|+|++|||+|||||||||+
T Consensus 320 ~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~ 399 (1044)
T PLN02915 320 VDKVSCYVSDDGASMLLFDTLSETAEFARRWVPFCKKHNIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKV 399 (1044)
T ss_pred ccceeEEEecCCchHhHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCccccccCchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcchhhhhccccccchHHHHHHHHHHhhcCCCCCCcccCCcccc-cCCCCCCCCCcCCCCCCCCCCCccceEEeecCC
Q 001071 502 RINSLPESIRRRSDAYNAHEELRAKKKQMEMGGSTAEPVKVPKATW-MSDGSHWPGTWTSGEPDHSRGDHAGIIQAMLAP 580 (1165)
Q Consensus 502 rI~~l~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~p~~~w-m~dgt~wpg~w~~~~~~~~~~dH~~iiqv~l~~ 580 (1165)
|||+|++ +++++|+++| |+|||+|||+|+ +|||+||||||++
T Consensus 400 RIe~l~~-----------------------------~~~~~~~~~~~m~dgt~W~g~~~--------~dHp~IIqVll~~ 442 (1044)
T PLN02915 400 RINALVA-----------------------------KAQKKPEEGWVMQDGTPWPGNNT--------RDHPGMIQVYLGS 442 (1044)
T ss_pred HHHHHHh-----------------------------hhccCCcccccccCCccCCCCCC--------CCCccceEEeecC
Confidence 9999864 2357888887 999999999984 7999999999997
Q ss_pred CCCCCCCCcccCCCCcccccccccccCcEEEEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHH
Q 001071 581 PNAEPVFGVEADGENLIDSTEVDVRLPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLAL 660 (1165)
Q Consensus 581 ~~~~~~~g~~~~~~~~~D~~~~~~~lP~LvYvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~L 660 (1165)
+ | ..|++|+ +||+||||||||||||+|||||||||||+||||+|||||||||||||||+|||+++
T Consensus 443 ~------~-------~~d~~g~--~lP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~ 507 (1044)
T PLN02915 443 E------G-------ALDVEGK--ELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAV 507 (1044)
T ss_pred C------C-------CcccccC--ccceeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhh
Confidence 5 2 1366775 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc-CCCceEEEecCeeecCCCCCCcccchhHHHHHhhccccccCCCceeccccchhhhhhhcCCCCCCcccc
Q 001071 661 REGMCFMLDR-GGDRICYVQFPQRFEGIDPNDRYANHNTVFFDVAMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEH 739 (1165)
Q Consensus 661 r~amcff~D~-~g~~vafVQfPQ~F~nid~~Dry~n~~~vFfdi~~~glDG~qgp~yvGTGc~fRR~ALyg~~p~~~~~~ 739 (1165)
|+|||||||+ .|+++|||||||+|+|+|++|||+|||+||||++|+|+||+|||+||||||+|||+||||++||...+.
T Consensus 508 r~AMCf~lD~~~g~~~afVQFPQrF~gidk~D~Y~n~~~Vffdi~~~GldGlqGP~YvGTGCffrR~aLYG~~pp~~~~~ 587 (1044)
T PLN02915 508 REAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKR 587 (1044)
T ss_pred HhhceeeecCCCCCeeEEEeCCcccCCCCCCCCcCccceEEEeeecccccccCCcccccCCceeeeeeecCcCCcccccc
Confidence 9999999999 699999999999999999999999999999999999999999999999999999999999999875321
Q ss_pred c--------CccccchhhhcccCccccccc-c--c--c----------------------------cccccCC--C----
Q 001071 740 H--------GWFGSRKIKLCLRKPKVAKKV-D--D--E----------------------------IALPING--D---- 772 (1165)
Q Consensus 740 ~--------~~~~~~~~~~~~~~~~~~~~~-~--~--~----------------------------~~~~~~~--~---- 772 (1165)
. .++| |||+.+||+++++ . . . .+.+++. +
T Consensus 588 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (1044)
T PLN02915 588 PKMTCDCWPSWCC----CCCGGGRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVFDLEEIEEG 663 (1044)
T ss_pred ccccccccccccc----ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1 1122 3454443322210 0 0 0 0001100 0
Q ss_pred CCCChh-h----HhhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHHhHhcccc
Q 001071 773 HNDDDA-D----IESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVISCF 847 (1165)
Q Consensus 773 ~~~~~~-e----~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea~~v~sC~ 847 (1165)
.++.++ | +....++++||+|++|++|+. .+.+|. |...+++++|+||++||||+
T Consensus 664 ~~~~~~~~~~~~~~~~~~~~~fG~S~~fi~S~~-~~~~~~--------------------~~~~~~~s~l~eA~~V~sC~ 722 (1044)
T PLN02915 664 LEGYDELEKSSLMSQKNFEKRFGQSPVFIASTL-MEDGGL--------------------PEGTNPAALIKEAIHVISCG 722 (1044)
T ss_pred cccccchhhhhhhhhhhhhhhcCCcHHHHHHHH-HhhcCC--------------------CCCCCcHHHHHHHHhccccC
Confidence 111111 1 112458999999999999994 344432 22346789999999999999
Q ss_pred cccccccccccccccCcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHhhhcchhHHHhhhcccccc
Q 001071 848 YEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLA 927 (1165)
Q Consensus 848 YE~~T~WG~evGw~~gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G~iQIl~sk~~pL~~ 927 (1165)
||++|+||+||||.|+|+|||+.||++||++||||+||+|++++|.|+||+|+.++++||+|||+|++||++++++|++.
T Consensus 723 YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lqIf~sr~~Pl~~ 802 (1044)
T PLN02915 723 YEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFMSRHCPLWY 802 (1044)
T ss_pred CCccCchhHhhCccccccccHHHHHHHHHccCCcEEeeCCCcHHhcCcCCCCHHHHHHHHHHHhhhHHHHHHhccCCccc
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999985
Q ss_pred --ccccccccchhhhhhHHHhhHHHHHHHHHHHHHHHHHhCCcchhcchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 001071 928 --SRRMKFLQRVAYFNVGMYPFTSMFLLVYCILPAVSLFSGQFIVQSLSISFLIYLLAITVTLCMLALLEIKWSGITLHD 1005 (1165)
Q Consensus 928 --~~~Lsl~QRL~Yl~~~lypl~si~~liylllP~l~LltG~~iip~~s~~fliy~lplfls~~l~slLe~rwsG~sl~~ 1005 (1165)
.++|+++||++|++.++||+.++++++|+++|++||++|++++|..+..+.+|++.+|+++++++++|++|+|+++++
T Consensus 803 g~~~~L~l~QRL~Yl~~~~yp~~slp~liY~llP~l~LLtG~~i~P~~s~~~~~~f~~lfls~~~~~lLE~~wsG~si~~ 882 (1044)
T PLN02915 803 AYGGKLKWLERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLNNLASIWFLALFLSIIATSVLELRWSGVSIED 882 (1044)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 479999999999999999999999999999999999999999997766666777778888888999999999999999
Q ss_pred ccchhhHHHhhhhhhHHHHHHHHHHHHHcCcccceEeCCCCCCCCCCCccccceeEeecccchHHHHHHHHHHHHHHHHH
Q 001071 1006 WWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGDDQFAELYEVKWSFLMVPPITIMMVNVIAIAVG 1085 (1165)
Q Consensus 1006 WWr~qr~W~I~~tsa~L~Av~~aLLk~Lgg~~~~F~VTpKg~~~dd~~~~~~ely~f~wSsLliP~~tLllLnLvaIv~G 1085 (1165)
|||+||||+|+++++|++|++++++|+|++++++|+||+|+. ++ +++++.++|+|+||++++|+++++++|++|+++|
T Consensus 883 WWrnQq~w~I~~tSa~Lfavl~~iLKvLg~se~~F~VTsK~~-d~-~~d~~~ely~F~~S~l~iP~ttllllNlvalv~G 960 (1044)
T PLN02915 883 LWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTSKAA-DD-EADEFGELYLFKWTTLLIPPTTLIILNMVGVVAG 960 (1044)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhcccCCcceecCCcc-cc-chhhhccceeecceehHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987 32 3456779999999999999999999999999999
Q ss_pred HHHHHcCCCCchhhhHHHHHHHHHHHHhHHHHHHHHhccCCCceehhHHHHHHHHHHHHHhhheecCCCCCCCCc
Q 001071 1086 VARTMYSPFPQWSRLIGGVFFSLWVLSHLYPFAKGLMGRRGKVSTIVFLWSGLISLIISLLWVYISPPSGRQDYM 1160 (1165)
Q Consensus 1086 i~r~i~~~~~~w~~l~g~l~~~~Wvl~nL~Pf~kgL~gR~~r~P~~v~~~s~ll~~~~sllwv~i~~~~~~~~~~ 1160 (1165)
+++++++.+..|+.+++++|+++|+++|+|||++|||+|++|+||||++||++|+++||||||+|+||+.+.++-
T Consensus 961 i~~~i~~~~~~~g~l~~~l~~~~wvvv~lyPf~kgLmgR~~r~P~~v~v~s~lla~~~~ll~v~~~~~~~~~~~~ 1035 (1044)
T PLN02915 961 VSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQTGP 1035 (1044)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeehHHHHHHHHHHHHHHheeccccCCCCCc
Confidence 999988777789999999999999999999999999999999999999999999999999999999999886643
No 6
>PLN02189 cellulose synthase
Probab=100.00 E-value=1.3e-261 Score=2331.12 Aligned_cols=927 Identities=48% Similarity=0.907 Sum_probs=797.5
Q ss_pred CCCCCcceeecCCCccccc-----cc-ccCCccchhhhhhhhcCCCCCCCCCCCccccCC-----CCCcccccc-ccccC
Q 001071 145 VKSGLICGMKGCDEKVMQN-----KC-DCGFKICRECYLECAGNGGGRCPGCKEPYKDAS-----DGEIEDEVI-SEEGD 212 (1165)
Q Consensus 145 ~~~g~~C~i~gcd~~~~~d-----~C-eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~~~-----~~~~e~~~~-~~~~~ 212 (1165)
+.++|+|||||++++++.| || ||+|||||+|||||||||+|+||||||+||||| +||||||+. |.++.
T Consensus 31 ~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~kgs~~v~gd~ee~~~dd~~~e 110 (1040)
T PLN02189 31 NLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLKGSPRVEGDDDEEDIDDIEHE 110 (1040)
T ss_pred cccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCCCcCCccccccchhhhhh
Confidence 8899999999999999888 99 999999999999999999999999999999999 777665554 34432
Q ss_pred CC----------CCCCccchhhhhh-------cccccccccccCC----CCCCC-------C------------------
Q 001071 213 QA----------LPLPSMADFKLDK-------RLSLVKSFKAQNH----PPDFD-------H------------------ 246 (1165)
Q Consensus 213 ~~----------~~~~~~~~~~~~~-------~~~~~~~~~~~~~----~~~~~-------~------------------ 246 (1165)
.+ +.+ ++++++|+. ..+.++++++.+| +++.. |
T Consensus 111 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (1040)
T PLN02189 111 FNIDDEQDKNKHITE-AMLHGKMSYGRGPDDDENNQFPPVITGVRSRPVSGEFPIGSGYGHGEQMLSSSLHKRVHPYPVS 189 (1040)
T ss_pred ccccccccchhHHHH-HHhhhhcccCCCcccCCCcCCCcccccCccccccCCcCccccccccccccCCcccCccCccccc
Confidence 22 111 344445541 1123456666654 23332 1
Q ss_pred ---ccccccccccccccccccCCCC-----CCCCC--CCCCCCCCCCCCcCCCCCceEEecccccccchhhHHHHHHHHH
Q 001071 247 ---TRWLFETKGTYGYGNALWPKDG-----YGAES--GSNGFEHPSDFGDRCRRPLARKIGVSTAIISPYRLIIVTRLAA 316 (1165)
Q Consensus 247 ---~~~~~~~~~~~~~~~~~w~~~~-----~~~~~--~~~~~~~~~~~~~~~~~pl~r~~~i~~~~~~pyR~~i~~~lv~ 316 (1165)
.|.++++|. ..||+|- ..++. ..+++.++..+++++++||+||++|++++|+|||+++++||++
T Consensus 190 ~~~~~~~~~~~~------~~wk~rv~~wk~~~~~~~~~~~~~~~d~~~~~~~~~pL~~~~~~~~~~~~pyR~~~~~~l~~ 263 (1040)
T PLN02189 190 EPGSAKWDEKKE------GGWKERMDDWKMQQGNLGPDPDDYDADMALIDEARQPLSRKVPIASSKVNPYRMVIVARLVV 263 (1040)
T ss_pred CCCcccCCcccc------ccHHHHHHHHHhhcccCCCCCCCCchhhhhcccCCCCceEEEecCccccchHHHHHHHHHHH
Confidence 122222221 2399881 11111 1111223445678999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCchhhHHHHHHHHHHHHHHHHHHhhcccceeeccccchhhHHhhhcCCCCCCCCCCCCCCcccEEEe
Q 001071 317 LALFLAWRIRHPNREAMWLWGMSITCEFWFAFSWVFDQLPKLCPVNRVTDLTVLKDRFESPNLCNPKGRSDLPGIDVFVS 396 (1165)
Q Consensus 317 l~~~l~wRi~~~~~~~~~lW~~~~~~Eiwfaf~wiL~q~~kw~Pv~R~t~~d~L~~r~~~~~~~~p~~~~~LP~VDVFV~ 396 (1165)
|++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|+||+|||++||++|+ ++++||+||||||
T Consensus 264 l~~~l~yRi~~~~~~~~~~W~~s~~~E~wFaf~Wll~q~~kw~Pv~R~t~~drL~~r~~~~~-----~~~~LP~vDvFV~ 338 (1040)
T PLN02189 264 LAFFLRYRILHPVHDAIGLWLTSIICEIWFAVSWILDQFPKWFPIDRETYLDRLSLRYEREG-----EPNMLSPVDIFVS 338 (1040)
T ss_pred HHHHHHHHhcCcCccchHHHHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCC-----CcccCCceeeEec
Confidence 99999999999999999999999999999999999999999999999999999999998764 3578999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhHHHHHHHHhhhhhhhhhhhhcCCCCCChhhhhhhcccc
Q 001071 397 TADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGALLTFEALAETASFARIWVPFCRKHNIEPRNPEAYFEQKRNF 476 (1165)
Q Consensus 397 TaDP~kEPp~vt~nTVLSilA~DYP~~Kls~YvsDDG~s~lTf~al~Eaa~FA~~WvPFCkK~~IepR~Pe~YFs~k~~~ 476 (1165)
||||.||||++|+||||||||+|||+|||+|||||||||+||||||.|||+|||+||||||||||||||||+||++|.++
T Consensus 339 TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~ 418 (1040)
T PLN02189 339 TVDPLKEPPLVTANTVLSILAMDYPVDKISCYVSDDGASMLTFEALSETAEFARKWVPFCKKFSIEPRAPEFYFSLKVDY 418 (1040)
T ss_pred cCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHHHhhcCCCCCCcccCCcccc-cCCCCCCC
Q 001071 477 LKNKIRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRAKKKQMEMGGSTAEPVKVPKATW-MSDGSHWP 555 (1165)
Q Consensus 477 ~~~~~~~~f~~e~~~mKreYeefk~rI~~l~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~p~~~w-m~dgt~wp 555 (1165)
++++++|+|++||++|||||||||+|||++++ +.+++|+++| |+||++||
T Consensus 419 ~~~~~~~~F~~e~~~~K~eYEe~kvRI~~l~a-----------------------------~~~~~p~~~~~m~dGt~W~ 469 (1040)
T PLN02189 419 LKDKVQPTFVKERRAMKREYEEFKVRINAIVA-----------------------------KAQKVPPEGWIMQDGTPWP 469 (1040)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHHHHHh-----------------------------hcCccCCccceeccCccCC
Confidence 99999999999999999999999999998853 3467888888 99999999
Q ss_pred CCcCCCCCCCCCCCccceEEeecCCCCCCCCCCcccCCCCcccccccccccCcEEEEEecCCCCCCcCCchhhhHHHHhh
Q 001071 556 GTWTSGEPDHSRGDHAGIIQAMLAPPNAEPVFGVEADGENLIDSTEVDVRLPMLVYVSREKRPGYDHNKKAGAMNALVRT 635 (1165)
Q Consensus 556 g~w~~~~~~~~~~dH~~iiqv~l~~~~~~~~~g~~~~~~~~~D~~~~~~~lP~LvYvSREKRPg~~Hh~KAGAlNallRv 635 (1165)
|+| ++|||+||||++++++ . .|.+|+ +||+|||||||||||++|||||||||+|+||
T Consensus 470 g~~--------~~dHp~IiQVll~~~~------~-------~d~~g~--~lP~LVYVSREKrPg~~Hh~KAGAMNaLlRV 526 (1040)
T PLN02189 470 GNN--------TRDHPGMIQVFLGHSG------G-------HDTEGN--ELPRLVYVSREKRPGFQHHKKAGAMNALIRV 526 (1040)
T ss_pred CCC--------CCCCHHHHHHHhcCCC------C-------cccccc--ccceeEEEeccCCCCCCcccchhhHHHHHHH
Confidence 996 6899999999999852 1 244554 8999999999999999999999999999999
Q ss_pred ccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhc-CCCceEEEecCeeecCCCCCCcccchhHHHHHhhccccccCCCc
Q 001071 636 SAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDR-GGDRICYVQFPQRFEGIDPNDRYANHNTVFFDVAMRALDGLQGP 714 (1165)
Q Consensus 636 Sav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~-~g~~vafVQfPQ~F~nid~~Dry~n~~~vFfdi~~~glDG~qgp 714 (1165)
||+|||||||||||||||+|||++||+|||||||+ .|+++|||||||+|+|+|++|||+||++||||++|+|+||+|||
T Consensus 527 SavmTNaPfILNLDCDmY~Nns~alr~AMCfflDp~~g~~vAfVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP 606 (1040)
T PLN02189 527 SAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQIGRKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGP 606 (1040)
T ss_pred hhhccCCCeEEEccCccccCchHHHHHhhhhhcCCccCceeEEEeCccccCCCCCCCccCCccceeeeeeecccccCCCc
Confidence 99999999999999999999999999999999998 68899999999999999999999999999999999999999999
Q ss_pred eeccccchhhhhhhcCCCCCCcccccCccccchhhhcccCcccccccccccccccCCCCCCCh-h-hHhhhccCccccCc
Q 001071 715 MYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDEIALPINGDHNDDD-A-DIESLLLPKRFGNS 792 (1165)
Q Consensus 715 ~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-e~~~~~~~~~fg~S 792 (1165)
+||||||+|||+||||++||+..+.....+++ .||+..+++++.++.+........+..+.+ + -....+++++||+|
T Consensus 607 ~YvGTGC~fRR~ALyG~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~S 685 (1040)
T PLN02189 607 VYVGTGCVFRRQALYGYDPPKGPKRPKMVTCD-CCPCFGRRKKKHAKNGLNGEVAALGGMESDKEMLMSQMNFEKKFGQS 685 (1040)
T ss_pred cccccCceeeeeeeeccCcccccccccccccc-hhhhcccccccccccccccccccccccchhhhhhhhhhhhHhhhccc
Confidence 99999999999999999998764421111111 133333322222111000000000000000 0 11224688999999
Q ss_pred hhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHHhHhcccccccccccccccccccCcccchHHHH
Q 001071 793 TSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTG 872 (1165)
Q Consensus 793 ~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGw~~gSVTEDi~TG 872 (1165)
++|++|+..+ .++. +....++++++||++|+||+||++|+||+||||.|+|+|||+.||
T Consensus 686 ~~fi~S~~~~-~~~~--------------------~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTED~~TG 744 (1040)
T PLN02189 686 AIFVTSTLME-EGGV--------------------PPSSSPAALLKEAIHVISCGYEDKTDWGLELGWIYGSITEDILTG 744 (1040)
T ss_pred hhhhhhhhhh-hcCC--------------------CCCCCcHHHHHHHHHhhccccccCCchhhccCeeccccccHHHHH
Confidence 9999999533 3321 223356889999999999999999999999999999999999999
Q ss_pred HHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHhhhcchhHHHhhhcccccc---ccccccccchhhhhhHHHhhHH
Q 001071 873 YRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLA---SRRMKFLQRVAYFNVGMYPFTS 949 (1165)
Q Consensus 873 lrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G~iQIl~sk~~pL~~---~~~Lsl~QRL~Yl~~~lypl~s 949 (1165)
++||++||||+||+|++++|.|+||+|+.+++.||+|||+|++||+++++||++. .++|+++|||+|++.++||+.+
T Consensus 745 ~rlH~rGWrSvY~~p~r~AF~GlAP~~L~~~L~Qr~RWA~G~lqI~~sr~nPl~~g~~~~~L~l~QRL~Yl~~~ly~~~s 824 (1040)
T PLN02189 745 FKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLLYGYKGGNLKWLERFAYVNTTIYPFTS 824 (1040)
T ss_pred HHHHccCCceEecCCCcHHhcCcCCCCHHHHHHHHHHHhhhhHHHhhccCCccccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999988999999999999999999999999999999999999975 3679999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcchhcchHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccchhhHHHhhhhhhHHHHHHHHH
Q 001071 950 MFLLVYCILPAVSLFSGQFIVQSLSISFLIYLLAITVTLCMLALLEIKWSGITLHDWWRNEQFWVIGGTSAHPAAVLQGL 1029 (1165)
Q Consensus 950 i~~liylllP~l~LltG~~iip~~s~~fliy~lplfls~~l~slLe~rwsG~sl~~WWr~qr~W~I~~tsa~L~Av~~aL 1029 (1165)
+++++|+++|++||++|++++|..+...+++++.++++++++.++|++|+|+++++|||+||||+|+++++|+||+++++
T Consensus 825 ip~liY~~lP~l~Ll~g~~i~p~vs~~~~~~fi~lf~~~~~~~llE~~~sG~s~~~WWrnQq~w~I~~~Sa~Lfavl~~i 904 (1040)
T PLN02189 825 LPLLAYCTLPAICLLTGKFIMPPISTFASLFFIALFMSIFATGILELRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQGL 904 (1040)
T ss_pred HHHHHHHHHHHHHHhcCCcccCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHhhhhhHHHHhhhHHHHHHHHHHH
Confidence 99999999999999999999998766666666677888889999999999999999999999999999999999999999
Q ss_pred HHHHcCcccceEeCCCCCCCCCCCccccceeEeecccchHHHHHHHHHHHHHHHHHHHHHHcCCCCchhhhHHHHHHHHH
Q 001071 1030 LKVIAGVDISFTLTSKSATPEDGDDQFAELYEVKWSFLMVPPITIMMVNVIAIAVGVARTMYSPFPQWSRLIGGVFFSLW 1109 (1165)
Q Consensus 1030 Lk~Lgg~~~~F~VTpKg~~~dd~~~~~~ely~f~wSsLliP~~tLllLnLvaIv~Gi~r~i~~~~~~w~~l~g~l~~~~W 1109 (1165)
+|+|++++++|.||+|.. + ++.++++|+|+||++++|+++|+++||+|+++|+++++.+++..|+++++++|+++|
T Consensus 905 lKvlggs~~~F~VTsK~~-~---d~~~~~ly~f~~s~l~iP~ttl~i~Nlvaiv~g~~~~~~~~~~~~~~~~~~~~~~~w 980 (1040)
T PLN02189 905 LKVLAGIDTNFTVTSKAT-D---DDEFGELYAFKWTTLLIPPTTLLIINIVGVVAGISDAINNGYQSWGPLFGKLFFAFW 980 (1040)
T ss_pred HHHhccCcccceeccccc-c---ccccccceeecceeHhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHH
Confidence 999999999999999987 2 245678999999999999999999999999999999998777789999999999999
Q ss_pred HHHhHHHHHHHHhccCCCceehhHHHHHHHHHHHHHhhheecCCCCCCCCcc
Q 001071 1110 VLSHLYPFAKGLMGRRGKVSTIVFLWSGLISLIISLLWVYISPPSGRQDYMK 1161 (1165)
Q Consensus 1110 vl~nL~Pf~kgL~gR~~r~P~~v~~~s~ll~~~~sllwv~i~~~~~~~~~~~ 1161 (1165)
+++|+|||+||||||+||+||||+|||++++++||||||+|+||+.+.++-.
T Consensus 981 vv~~~~Pf~kgl~gR~~r~P~~v~v~s~ll~~~~~l~~v~~~~~~~~~~~~~ 1032 (1040)
T PLN02189 981 VIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPD 1032 (1040)
T ss_pred HHHHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHheecccccCCCCch
Confidence 9999999999999999999999999999999999999999999998866543
No 7
>PLN02195 cellulose synthase A
Probab=100.00 E-value=1.2e-260 Score=2313.70 Aligned_cols=914 Identities=48% Similarity=0.893 Sum_probs=788.6
Q ss_pred CCCCCcceeecCCCccccc-----cc-ccCCccchhhhhhhhcCCCCCCCCCCCccccCCCCCccccccccccCCCCCCC
Q 001071 145 VKSGLICGMKGCDEKVMQN-----KC-DCGFKICRECYLECAGNGGGRCPGCKEPYKDASDGEIEDEVISEEGDQALPLP 218 (1165)
Q Consensus 145 ~~~g~~C~i~gcd~~~~~d-----~C-eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~~~~~~~e~~~~~~~~~~~~~~~ 218 (1165)
.+++|+|||||++++++.| || ||+|||||+|||||||||+|+||||||+||+ +|+.| |.|+..+...
T Consensus 3 ~~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~---~~~~~---d~~~~~~~~~- 75 (977)
T PLN02195 3 ESGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDA---ENVFD---DVETKHSRNQ- 75 (977)
T ss_pred cCCCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCcccc---ccccc---hhhhhhccch-
Confidence 3589999999999999988 99 9999999999999999999999999999994 22222 2222111000
Q ss_pred ccchhhhhh-----cccccccccccCCCCCCCCccccccccccccccccccCCCC-------C--------CC---CCCC
Q 001071 219 SMADFKLDK-----RLSLVKSFKAQNHPPDFDHTRWLFETKGTYGYGNALWPKDG-------Y--------GA---ESGS 275 (1165)
Q Consensus 219 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-------~--------~~---~~~~ 275 (1165)
..+..+++. ...+++++++. .+++.. -+|||++||+|- + .. ++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~~wk~r~~~wk~~~~~~~~~~~~~~~~~~~~~ 143 (977)
T PLN02195 76 STMASHLNDTQDVGIHARHISSVST-VDSELN-----------DEYGNPIWKNRVESWKDKKNKKKKSAKKKEAHKAQIP 143 (977)
T ss_pred hhhhhhcccCcCCCCCCcccccccc-CCCccc-----------CccCCHHHHHHHHHHHHhhhhhccccccccccccCCC
Confidence 111112211 11122233322 122211 249999999981 0 00 0110
Q ss_pred CCCC-CCCCCCcCCCCCceEEecccccccchhhHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHHHHHHHhh
Q 001071 276 NGFE-HPSDFGDRCRRPLARKIGVSTAIISPYRLIIVTRLAALALFLAWRIRHPNREAMWLWGMSITCEFWFAFSWVFDQ 354 (1165)
Q Consensus 276 ~~~~-~~~~~~~~~~~pl~r~~~i~~~~~~pyR~~i~~~lv~l~~~l~wRi~~~~~~~~~lW~~~~~~Eiwfaf~wiL~q 354 (1165)
.+++ ++.+ +|+.++||+||++|++++|+|||+++++||++|++||+||++|++.+++|+|+++++||+||+|+|+|+|
T Consensus 144 ~~~~~~~~~-~~~~~~pL~~~~~i~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll~q 222 (977)
T PLN02195 144 PEQQMEEKP-SADAYEPLSRVIPIPRNKLTPYRAVIIMRLIILGLFFHYRITNPVDSAFGLWLTSVICEIWFAFSWVLDQ 222 (977)
T ss_pred CccCCcccc-cccccCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHhc
Confidence 1111 2333 4899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeccccchhhHHhhhcCCCCCCCCCCCCCCcccEEEeCCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEcCCCC
Q 001071 355 LPKLCPVNRVTDLTVLKDRFESPNLCNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGG 434 (1165)
Q Consensus 355 ~~kw~Pv~R~t~~d~L~~r~~~~~~~~p~~~~~LP~VDVFV~TaDP~kEPp~vt~nTVLSilA~DYP~~Kls~YvsDDG~ 434 (1165)
++||+||+|+||+|||++||++|+ ++++||+||||||||||.||||++|+||||||||+|||+|||+||||||||
T Consensus 223 ~~Kw~Pv~R~t~~drL~~r~~~~~-----~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGg 297 (977)
T PLN02195 223 FPKWSPINRETYIDRLSARYEREG-----EPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGA 297 (977)
T ss_pred ccccccccceECHHHHHHHhccCC-----CcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCc
Confidence 999999999999999999998654 468999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHhhhhhhhhhhhhcCCCCCChhhhhhhccccccccchhhhHHHHHHHHHHHHHHHHHHhcchhhhhccc
Q 001071 435 ALLTFEALAETASFARIWVPFCRKHNIEPRNPEAYFEQKRNFLKNKIRLDFVRERRRVKREYDEFKVRINSLPESIRRRS 514 (1165)
Q Consensus 435 s~lTf~al~Eaa~FA~~WvPFCkK~~IepR~Pe~YFs~k~~~~~~~~~~~f~~e~~~mKreYeefk~rI~~l~~~~~~~~ 514 (1165)
|+||||||.|||+|||+||||||||||||||||+||++|.++++++++|+|++||++|||||||||+|||+|++
T Consensus 298 S~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~RIe~~~~------ 371 (977)
T PLN02195 298 AMLSFESLVETAEFARKWVPFCKKYSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVA------ 371 (977)
T ss_pred hHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred cccchHHHHHHHHHHhhcCCCCCCcccCCcccc-cCCCCCCCCCcCCCCCCCCCCCccceEEeecCCCCCCCCCCcccCC
Q 001071 515 DAYNAHEELRAKKKQMEMGGSTAEPVKVPKATW-MSDGSHWPGTWTSGEPDHSRGDHAGIIQAMLAPPNAEPVFGVEADG 593 (1165)
Q Consensus 515 ~~~~~~ee~~~~~~~~~~~~~~~~~~~~p~~~w-m~dgt~wpg~w~~~~~~~~~~dH~~iiqv~l~~~~~~~~~g~~~~~ 593 (1165)
+++++|+++| |+|||+|||+| ++|||+||||||++++ .
T Consensus 372 -----------------------~~~~~~~~~~~m~d~t~W~g~~--------~~dHp~IIqVll~~~~------~---- 410 (977)
T PLN02195 372 -----------------------KAQKTPEEGWTMQDGTPWPGNN--------TRDHPGMIQVFLGETG------A---- 410 (977)
T ss_pred -----------------------hcccCCcccccccCCccCCCCC--------CCCCcchhhhhccCCC------C----
Confidence 2357788877 99999999995 6899999999998752 1
Q ss_pred CCcccccccccccCcEEEEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhc-CC
Q 001071 594 ENLIDSTEVDVRLPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDR-GG 672 (1165)
Q Consensus 594 ~~~~D~~~~~~~lP~LvYvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~-~g 672 (1165)
.|++|+ +||+|||||||||||++||+||||||+|+||||+|||||||||||||||+|||++||+|||||+|+ .|
T Consensus 411 ---~d~~g~--~lP~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~~D~~~g 485 (977)
T PLN02195 411 ---RDIEGN--ELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFLMDPVVG 485 (977)
T ss_pred ---cccccc--cCceeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhccCcccC
Confidence 256665 899999999999999999999999999999999999999999999999999999999999999998 68
Q ss_pred CceEEEecCeeecCCCCCCcccchhHHHHHhhccccccCCCceeccccchhhhhhhcCCCCCCcccccCccccchhhhcc
Q 001071 673 DRICYVQFPQRFEGIDPNDRYANHNTVFFDVAMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCL 752 (1165)
Q Consensus 673 ~~vafVQfPQ~F~nid~~Dry~n~~~vFfdi~~~glDG~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~ 752 (1165)
+++|||||||+|+|++++|+|+|++++|||++|+|+||+|||+||||||+|||+||||++||+..+..+..+....|||+
T Consensus 486 ~~va~VQ~PQ~F~~i~~~D~y~~~~~~ffd~~~~g~dglqGP~YvGTGC~fRR~ALyG~~p~~~~~~~~~~~~~~~~~~~ 565 (977)
T PLN02195 486 RDVCYVQFPQRFDGIDRSDRYANRNVVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSLPRLPKSSSSSSSCCCP 565 (977)
T ss_pred CeeEEEcCCcccCCCCCCCCCCcccceeeeeeeccccccCCccccccCceeeehhhhccCcccccccccccccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999998864322211111125666
Q ss_pred cCccccccc--------ccccccccCC--CCCC-Chhh----HhhhccCccccCchhhhhchhhhhhhcchhcccccCCC
Q 001071 753 RKPKVAKKV--------DDEIALPING--DHND-DDAD----IESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGN 817 (1165)
Q Consensus 753 ~~~~~~~~~--------~~~~~~~~~~--~~~~-~~~e----~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~ 817 (1165)
.++|...++ ......++.. +.++ ++.| ....+++++||+|++|++|+ +++.+|.+
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~fG~S~~fi~S~-~~~~~~~~--------- 635 (977)
T PLN02195 566 TKKKPEQDPSEIYRDAKREDLNAAIFNLREIDNYDEYERSMLISQMSFEKTFGLSSVFIEST-LMENGGVP--------- 635 (977)
T ss_pred ccccccccchhhccccccccccccccccccccccchhhhhhhhhhhHHHHhhcccHHHHHHH-HHHhcCCC---------
Confidence 544433211 1111111110 1111 1111 11246899999999999999 56666532
Q ss_pred CCCCCCCCCCCCCccchHHHHHHhHhcccccccccccccccccccCcccchHHHHHHHHhCCcEEEEeecCCccccccCC
Q 001071 818 QGRPPGSLAVPREPLDAATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAP 897 (1165)
Q Consensus 818 ~g~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGw~~gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAP 897 (1165)
..+.++++++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+||+|++++|.|+||
T Consensus 636 -----------~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rlH~rGWrSvY~~p~r~af~G~AP 704 (977)
T PLN02195 636 -----------ESANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPVRPAFKGSAP 704 (977)
T ss_pred -----------CCCCcHHHHHHHHhhhcccCccccchhhhcCeeccceecHHHHHHHHHccCCcEEecCCccHHhcccCC
Confidence 234668899999999999999999999999999999999999999999999999999988899999999
Q ss_pred CCHHHHHHHhHhhhcchhHHHhhhcccccc---ccccccccchhhhhhHHHhhHHHHHHHHHHHHHHHHHhCCcchhcch
Q 001071 898 INLTDRLHQVLRWATGSVEIFFSRNNALLA---SRRMKFLQRVAYFNVGMYPFTSMFLLVYCILPAVSLFSGQFIVQSLS 974 (1165)
Q Consensus 898 eTL~~~l~QR~RWA~G~iQIl~sk~~pL~~---~~~Lsl~QRL~Yl~~~lypl~si~~liylllP~l~LltG~~iip~~s 974 (1165)
+|+.+++.||+|||+|++||++++++|++. .++|+++|||+|++.++||++++++++|+++|++||++|++++|..+
T Consensus 705 ~~L~~~L~Qr~RWA~G~lqI~~sr~nPl~~g~~~~~L~~~QRL~Yl~~~ly~~~slp~liY~~lP~l~Ll~G~~i~P~vs 784 (977)
T PLN02195 705 INLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGGRLKWLQRLAYINTIVYPFTSLPLIAYCTLPAICLLTGKFIIPTLS 784 (977)
T ss_pred CCHHHHHHHHHHHHhchhhhhhccCCccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeecccch
Confidence 999999999999999999999999999974 37899999999999999999999999999999999999999999877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccccccchhhHHHhhhhhhHHHHHHHHHHHHHcCcccceEeCCCCCCCCCCCc
Q 001071 975 ISFLIYLLAITVTLCMLALLEIKWSGITLHDWWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGDD 1054 (1165)
Q Consensus 975 ~~fliy~lplfls~~l~slLe~rwsG~sl~~WWr~qr~W~I~~tsa~L~Av~~aLLk~Lgg~~~~F~VTpKg~~~dd~~~ 1054 (1165)
..++++++.+|+++++++++|++|+|.++++||||||||+|++|++||+|++++++|+|++++++|+||+|.. + ++
T Consensus 785 ~~~~~~f~~lfl~~~~~~~lE~~~sG~si~~WWrnqq~w~I~~tSa~Lfavl~~llKvLggs~~~F~VTsK~~-d---d~ 860 (977)
T PLN02195 785 NLASMLFLGLFISIILTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTAKAA-D---DT 860 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHcCCCccceeccccc-c---cc
Confidence 6666777778889999999999999999999999999999999999999999999999999999999999987 2 34
Q ss_pred cccceeEeecccchHHHHHHHHHHHHHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHHhHHHHHHHHhccCCCceehhHH
Q 001071 1055 QFAELYEVKWSFLMVPPITIMMVNVIAIAVGVARTMYSPFPQWSRLIGGVFFSLWVLSHLYPFAKGLMGRRGKVSTIVFL 1134 (1165)
Q Consensus 1055 ~~~ely~f~wSsLliP~~tLllLnLvaIv~Gi~r~i~~~~~~w~~l~g~l~~~~Wvl~nL~Pf~kgL~gR~~r~P~~v~~ 1134 (1165)
+++++|+|+||++++|+++|+++||+|+++|+++++.++++.|+.+++++|+++|+++|+|||+||||||+||+||||+|
T Consensus 861 ~~~~~Y~f~~S~l~iP~ttl~ilNlvaiv~g~~~~i~~~~~~~g~l~~~~~~~~wvv~~~~Pf~kgl~gR~~r~P~~v~v 940 (977)
T PLN02195 861 EFGELYMVKWTTLLIPPTSLLIINLVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVVL 940 (977)
T ss_pred chhcceeccceehhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCeeehH
Confidence 67899999999999999999999999999999999988788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhheecCCCCCCCCc
Q 001071 1135 WSGLISLIISLLWVYISPPSGRQDYM 1160 (1165)
Q Consensus 1135 ~s~ll~~~~sllwv~i~~~~~~~~~~ 1160 (1165)
||++++++||||||+|+||+.++++-
T Consensus 941 ~s~ll~~~~~l~~v~~~~~~~~~~~~ 966 (977)
T PLN02195 941 WSVLLASVFSLVWVKINPFVGKTDTT 966 (977)
T ss_pred HHHHHHHHHHHHHeeccccccCCCCC
Confidence 99999999999999999999987754
No 8
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=100.00 E-value=3.4e-214 Score=1876.46 Aligned_cols=698 Identities=58% Similarity=1.022 Sum_probs=639.3
Q ss_pred ccEEEeCCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhHHHHHHHHhhhhhhhhhhhhcCCCCCChhhhh
Q 001071 391 IDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGALLTFEALAETASFARIWVPFCRKHNIEPRNPEAYF 470 (1165)
Q Consensus 391 VDVFV~TaDP~kEPp~vt~nTVLSilA~DYP~~Kls~YvsDDG~s~lTf~al~Eaa~FA~~WvPFCkK~~IepR~Pe~YF 470 (1165)
||||||||||+||||++|+||||||||+|||+|||+|||||||||+||||||.|||+|||+||||||||+|||||||+||
T Consensus 1 vDvFv~TaDP~~EPp~~~~nTvLS~lA~dYP~~kls~YvSDDg~s~ltf~al~Ea~~FA~~WvPFCkk~~ie~R~P~~YF 80 (720)
T PF03552_consen 1 VDVFVCTADPEKEPPLVTANTVLSILAYDYPVEKLSCYVSDDGGSMLTFYALMEAAKFAKHWVPFCKKYNIEPRAPEAYF 80 (720)
T ss_pred CceEEecCCCCcCCCeeeHHHHHHHHhhcCCccceeEEEecCCchHHHHHHHHHHHHHHhhhcchhhccCCccCCHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccchhhhHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHHHhhcCCCCCCcccCCcccc-cC
Q 001071 471 EQKRNFLKNKIRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRAKKKQMEMGGSTAEPVKVPKATW-MS 549 (1165)
Q Consensus 471 s~k~~~~~~~~~~~f~~e~~~mKreYeefk~rI~~l~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~p~~~w-m~ 549 (1165)
+++.|+++++.+|+|++||++|||||||||+|||++++. .+++|+++| |+
T Consensus 81 ~~~~~~~~~~~~~~f~~e~~~~k~~ye~~k~ri~~~~~~-----------------------------~~~~~~~~~~~~ 131 (720)
T PF03552_consen 81 SSKIDPLKDKVQPEFVKERRAMKREYEEFKVRIEALVAK-----------------------------IQKVPEEGWTMQ 131 (720)
T ss_pred ccCCCcccCCcChhHHHHHHHHHHHHHHHHHHHHHHhhh-----------------------------hhcccccceecc
Confidence 999999999999999999999999999999999998652 346899999 99
Q ss_pred CCCCCCCCcCCCCCCCCCCCccceEEeecCCCCCCCCCCcccCCCCcccccccccccCcEEEEEecCCCCCCcCCchhhh
Q 001071 550 DGSHWPGTWTSGEPDHSRGDHAGIIQAMLAPPNAEPVFGVEADGENLIDSTEVDVRLPMLVYVSREKRPGYDHNKKAGAM 629 (1165)
Q Consensus 550 dgt~wpg~w~~~~~~~~~~dH~~iiqv~l~~~~~~~~~g~~~~~~~~~D~~~~~~~lP~LvYvSREKRPg~~Hh~KAGAl 629 (1165)
||++|||+ +++|||+|||||+++++.+ |.+|+ +||+||||||||||+++||+|||||
T Consensus 132 ~~~~w~~~--------~~~dH~~iiqv~~~~~~~~-------------~~~g~--~lP~lvYvsREKrp~~~Hh~KAGAm 188 (720)
T PF03552_consen 132 DGTPWPGN--------TRRDHPGIIQVLLDNPGGK-------------DVDGN--ELPMLVYVSREKRPGYPHHFKAGAM 188 (720)
T ss_pred CCCcCCCC--------CCcCChhheEeeccCCCCc-------------ccccC--cCCeEEEEeccCCCCCCchhhhccc
Confidence 99999995 8999999999999986322 44454 7999999999999999999999999
Q ss_pred HHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhc-CCCceEEEecCeeecCCCCCCcccchhHHHHHhhcccc
Q 001071 630 NALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDR-GGDRICYVQFPQRFEGIDPNDRYANHNTVFFDVAMRAL 708 (1165)
Q Consensus 630 NallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~-~g~~vafVQfPQ~F~nid~~Dry~n~~~vFfdi~~~gl 708 (1165)
|||+||||+|||||||||||||||+|||+++|+|||||||+ .|+++|||||||+|+|+|++|+|+||+++||+++|+|+
T Consensus 189 NaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~~g~~~~~vQfpq~f~~i~~~d~y~~~~~~~~~~~~~g~ 268 (720)
T PF03552_consen 189 NALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPKIGKKIAFVQFPQRFDGIDKNDRYGNQNRVFFDINMRGL 268 (720)
T ss_pred ccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCCCCCeeEEEeCCceeCCCCcCCCCCccceeeeecccccc
Confidence 99999999999999999999999999999999999999999 49999999999999999999999999999999999999
Q ss_pred ccCCCceeccccchhhhhhhcCCCCCCcccccCccccchhhhcccCccccccc--------ccccccccCC--CCC----
Q 001071 709 DGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKV--------DDEIALPING--DHN---- 774 (1165)
Q Consensus 709 DG~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~--~~~---- 774 (1165)
||+|||+||||||+|||+||||++||+..+..+..+++..||+|++||+++++ +.+...++.. +++
T Consensus 269 dG~~gp~y~Gtgc~~rR~al~g~~~~~~~~~~~~~~~~~~~c~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (720)
T PF03552_consen 269 DGLQGPFYVGTGCFFRREALYGFDPPRYEKDPEKTCCCCSCCFGRRKKKKSKKKPKKRASKRRESSSPIFALEDIEEGAE 348 (720)
T ss_pred ccCCCceeeecCcceechhhhCCCCCchhcccCcceeeeecccCCcccccccccchhccccccccccccccccccccccc
Confidence 99999999999999999999999999987654443333457788776554332 1122223321 221
Q ss_pred CChhh----HhhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHHhHhccccccc
Q 001071 775 DDDAD----IESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVISCFYED 850 (1165)
Q Consensus 775 ~~~~e----~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~ 850 (1165)
.+++| ++..+++++||+|++||+|+. .+.+ .++++++++++|+||++|+||+||+
T Consensus 349 ~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~-~~~~--------------------~~~~~~~~~~~L~EA~~V~sC~YE~ 407 (720)
T PF03552_consen 349 GSDEERSSLMSQKELEKKFGQSPEFIASTL-MAQG--------------------GVPRSPSPASLLEEAIHVASCGYED 407 (720)
T ss_pred cchhhhhhcchhHHHHHHhcCCHHHHHHHH-HHhc--------------------CCCCCCChHHHHHHHHHHhcCCccc
Confidence 12222 333679999999999999994 3322 2456678899999999999999999
Q ss_pred ccccccccccccCcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHhhhcchhHHHhhhccccccc--
Q 001071 851 KTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLAS-- 928 (1165)
Q Consensus 851 ~T~WG~evGw~~gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G~iQIl~sk~~pL~~~-- 928 (1165)
+|+|||||||.|+|+|||+.||++||++||||+||+|++++|.|.||+|+.+.|.|++|||.|++||+++||||++.+
T Consensus 408 ~T~WGkevGwiYGSvtEDv~TG~rmH~rGWrSvYc~p~r~AF~G~AP~nL~d~L~Q~~RWA~GslEI~fSr~~Pl~~g~~ 487 (720)
T PF03552_consen 408 KTEWGKEVGWIYGSVTEDVLTGFRMHCRGWRSVYCNPKRPAFLGSAPINLSDRLHQVKRWATGSLEIFFSRHCPLWYGYG 487 (720)
T ss_pred cCCcccccceEEEecccccccceeEeeCceeeEEeccccchhcccCCCChhhhceeeeeEeeeeEeeehhcCCchhccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred cccccccchhhhhhHHHhhHHHHHHHHHHHHHHHHHhCCcchhcchHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Q 001071 929 RRMKFLQRVAYFNVGMYPFTSMFLLVYCILPAVSLFSGQFIVQSLSISFLIYLLAITVTLCMLALLEIKWSGITLHDWWR 1008 (1165)
Q Consensus 929 ~~Lsl~QRL~Yl~~~lypl~si~~liylllP~l~LltG~~iip~~s~~fliy~lplfls~~l~slLe~rwsG~sl~~WWr 1008 (1165)
++|+++|||+|++.++||++|+|+++|+++|++||++|++++|+.+..++++++++|+++++++++|++|+|+++++|||
T Consensus 488 ~rL~~lQrLaY~~~~~ypl~Sipll~Y~~lPalcLLtG~~i~Pk~s~~~~~~f~~lf~~~~~~~llE~~wsG~si~~WWr 567 (720)
T PF03552_consen 488 GRLKFLQRLAYLNYMLYPLTSIPLLCYCFLPALCLLTGIFIFPKVSSPWFIYFLALFVSIYAYSLLEFRWSGVSIREWWR 567 (720)
T ss_pred CCCcHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhCCCcccCccccchhHHHHHHHHHHHHHHHHHHHhccCcHHHhhc
Confidence 89999999999999999999999999999999999999999999888788888889999999999999999999999999
Q ss_pred hhhHHHhhhhhhHHHHHHHHHHHHHcCcccceEeCCCCCCCCCCCccccceeEeecccchHHHHHHHHHHHHHHHHHHHH
Q 001071 1009 NEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGDDQFAELYEVKWSFLMVPPITIMMVNVIAIAVGVAR 1088 (1165)
Q Consensus 1009 ~qr~W~I~~tsa~L~Av~~aLLk~Lgg~~~~F~VTpKg~~~dd~~~~~~ely~f~wSsLliP~~tLllLnLvaIv~Gi~r 1088 (1165)
+||||+|.++++|++|++++++|+|++++++|+||+|.. +| ++++|.|+|+|+||++++|+++|+++||+|+++|++|
T Consensus 568 nQq~W~I~~tSa~LfAvl~~iLK~lg~s~t~F~VTsK~~-dd-e~~~~~ely~f~wS~LfiP~tTllilNLva~v~Gi~r 645 (720)
T PF03552_consen 568 NQQFWMIGGTSAHLFAVLQGILKVLGGSETSFTVTSKVS-DD-EDDKYAELYIFKWSPLFIPPTTLLILNLVAFVVGISR 645 (720)
T ss_pred ccceeeehhhHHHHHHHHHHHHHHHcCCccceeeccccc-cc-ccccccccccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987 33 4567889999999999999999999999999999999
Q ss_pred HHcCCCCchhhhHHHHHHHHHHHHhHHHHHHHHhccCCCceehhHHHHHHHHHHHHHhhheecCCCCCCCCcccc
Q 001071 1089 TMYSPFPQWSRLIGGVFFSLWVLSHLYPFAKGLMGRRGKVSTIVFLWSGLISLIISLLWVYISPPSGRQDYMKFQ 1163 (1165)
Q Consensus 1089 ~i~~~~~~w~~l~g~l~~~~Wvl~nL~Pf~kgL~gR~~r~P~~v~~~s~ll~~~~sllwv~i~~~~~~~~~~~~~ 1163 (1165)
++++++++|+++++++|+++|+++|+|||+||||+|++|+||||++||++|+++|+||||+||||++++++..+|
T Consensus 646 ~i~~g~~~~g~l~g~lf~~~wVvv~lyPf~kGL~~R~~r~P~~v~v~S~lla~i~~llwv~i~~~~~~~~~~~~~ 720 (720)
T PF03552_consen 646 AINSGYGSWGPLLGQLFFSFWVVVHLYPFLKGLFGRKDRIPTSVIVWSVLLASIFSLLWVRIDPFLAKTTGPDLK 720 (720)
T ss_pred HhccCCCchhHHHHHHHHHHHHHHHhhHHHHhhhcccCCcceeehHHHHHHHHHHHHHheecccCcCCCCCCCCC
Confidence 998888899999999999999999999999999999999999999999999999999999999999999876543
No 9
>PLN02190 cellulose synthase-like protein
Probab=100.00 E-value=8.8e-207 Score=1816.76 Aligned_cols=725 Identities=32% Similarity=0.576 Sum_probs=637.9
Q ss_pred CCCCceEEecccccccchhhHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHHHHHHHhhcccceeeccccch
Q 001071 288 CRRPLARKIGVSTAIISPYRLIIVTRLAALALFLAWRIRHPNREAMWLWGMSITCEFWFAFSWVFDQLPKLCPVNRVTDL 367 (1165)
Q Consensus 288 ~~~pl~r~~~i~~~~~~pyR~~i~~~lv~l~~~l~wRi~~~~~~~~~lW~~~~~~Eiwfaf~wiL~q~~kw~Pv~R~t~~ 367 (1165)
+..||.+++++++.+ ||++.+++++++++||+||++|+++++ ++|+++++||+||+|+|+|+|++||+|++|.|++
T Consensus 7 ~~~pL~~~~~~~~~~---~r~~~~~vl~~~~~~l~~R~~~~~~~~-~~W~~~~~~E~wf~~~WlL~q~~kw~pv~r~~~p 82 (756)
T PLN02190 7 SLPPLCERISHKSYF---LRAVDLTILGLLFSLLLYRILHMSEND-TVWLVAFLCESCFSFVWLLITCIKWSPAEYKPYP 82 (756)
T ss_pred CCCCceeeeeccchh---HHHHHHHHHHHHHHHHHHHHhCCCccc-HHHHHHHHHHHHHHHHHHHhccceeeecCCCCCc
Confidence 458999999999996 899999999999999999999998876 6899999999999999999999999999999999
Q ss_pred hhHHhhhcCCCCCCCCCCCCCCcccEEEeCCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhHHHHHHHHh
Q 001071 368 TVLKDRFESPNLCNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGALLTFEALAETAS 447 (1165)
Q Consensus 368 d~L~~r~~~~~~~~p~~~~~LP~VDVFV~TaDP~kEPp~vt~nTVLSilA~DYP~~Kls~YvsDDG~s~lTf~al~Eaa~ 447 (1165)
|||++||+ +||+||||||||||.||||++|+||||||||+|||+|||+|||||||||+||||||.|||+
T Consensus 83 ~~l~~r~~-----------~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa~ 151 (756)
T PLN02190 83 DRLDERVH-----------DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASK 151 (756)
T ss_pred HHHHHhhc-----------cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHHH
Confidence 99999983 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhcCCCCCChhhhhhhccccccccchhhhHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHH
Q 001071 448 FARIWVPFCRKHNIEPRNPEAYFEQKRNFLKNKIRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRAKK 527 (1165)
Q Consensus 448 FA~~WvPFCkK~~IepR~Pe~YFs~k~~~~~~~~~~~f~~e~~~mKreYeefk~rI~~l~~~~~~~~~~~~~~ee~~~~~ 527 (1165)
|||+||||||||||||||||+||+++.+ ++.+++|++||++|||||||||+||++++
T Consensus 152 FA~~WvPFCrK~~IepRaPe~YF~~~~~---~~~~~~f~~e~~~~K~eYee~k~ri~~a~-------------------- 208 (756)
T PLN02190 152 FAKIWVPFCKKYNVRVRAPFRYFLNPPV---ATEDSEFSKDWEMTKREYEKLSRKVEDAT-------------------- 208 (756)
T ss_pred HHhhhcccccccCCCcCCHHHHhcCCCC---CCCCchhHHHHHHHHHHHHHHHHHHHhhc--------------------
Confidence 9999999999999999999999998543 33458999999999999999999998642
Q ss_pred HHhhcCCCCCCcccCCcccccCCCCCCCC--CcCCCCCCCCCCCccceEEeecCCCCCCCCCCcccCCCCcccccccccc
Q 001071 528 KQMEMGGSTAEPVKVPKATWMSDGSHWPG--TWTSGEPDHSRGDHAGIIQAMLAPPNAEPVFGVEADGENLIDSTEVDVR 605 (1165)
Q Consensus 528 ~~~~~~~~~~~~~~~p~~~wm~dgt~wpg--~w~~~~~~~~~~dH~~iiqv~l~~~~~~~~~g~~~~~~~~~D~~~~~~~ 605 (1165)
++++|++ .|..+.++++++|||+|||||+++++ . +.+| .+
T Consensus 209 ----------------------~~~~~~~~~~~~~~~~~~~~~dH~~iiqVll~~~~------~--------~~~~--~~ 250 (756)
T PLN02190 209 ----------------------GDSHWLDAEDDFEAFSNTKPNDHSTIVKVVWENKG------G--------VGDE--KE 250 (756)
T ss_pred ----------------------cCCCCcccCCcccccCCCCCCCCccceEEEecCCC------C--------cccc--cc
Confidence 1355665 46667788999999999999999852 1 1112 38
Q ss_pred cCcEEEEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhc--CCCceEEEecCee
Q 001071 606 LPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDR--GGDRICYVQFPQR 683 (1165)
Q Consensus 606 lP~LvYvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~--~g~~vafVQfPQ~ 683 (1165)
||+||||||||||+++|||||||||+|+||||+|||||||||||||||+|||+++|+|||||||+ +++++|||||||+
T Consensus 251 lP~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r~AmCf~ld~~~~~~~~~fVQfPQ~ 330 (756)
T PLN02190 251 VPHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVRQAMCIFLQKSKNSNHCAFVQFPQE 330 (756)
T ss_pred CceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHHHhhhhhcCCCCCCCeeEEEeCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999997 3458999999999
Q ss_pred ecCCCCCCcccchhHHHHHhhccccccCCCceeccccchhhhhhhcCCCCCCcccccCccccchhhhcccCccccccccc
Q 001071 684 FEGIDPNDRYANHNTVFFDVAMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDD 763 (1165)
Q Consensus 684 F~nid~~Dry~n~~~vFfdi~~~glDG~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (1165)
|+ |+|+||++||||++|+|+||+|||+|+||||+|||+||||++||+..+..... ...
T Consensus 331 F~-----D~y~n~~~v~f~~~~~GldGlqGP~YvGTGCffrR~alyG~~p~~~~~~~~~~---------------~~~-- 388 (756)
T PLN02190 331 FY-----DSNTNELTVLQSYLGRGIAGIQGPIYIGSGCFHTRRVMYGLSSDDLEDDGSLS---------------SVA-- 388 (756)
T ss_pred hc-----cccCccceEEEEEeeccccccCCcccccCCcceEeeeecCCCccccccccccc---------------ccc--
Confidence 98 88999999999999999999999999999999999999999998764421000 000
Q ss_pred ccccccCCCCCCChhhHhhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHHhHh
Q 001071 764 EIALPINGDHNDDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISV 843 (1165)
Q Consensus 764 ~~~~~~~~~~~~~~~e~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea~~v 843 (1165)
+. +-....+++++||+|++|++|+ .+++++.+ +|+. ..+++++||++|
T Consensus 389 ~~------------~~~~~~~~~~~fg~s~~f~~s~-~~~~~~~~-----------~~~~--------~~~~~~~eA~~V 436 (756)
T PLN02190 389 TR------------EFLAEDSLAREFGNSKEMVKSV-VDALQRKP-----------NPQN--------SLTNSIEAAQEV 436 (756)
T ss_pred cc------------cccchhhhhhhcCCcHHHHHHH-HHHhccCC-----------CCcc--------chHHHHHHHHhh
Confidence 00 0011123568999999999999 44444321 1111 125899999999
Q ss_pred cccccccccccccccccccCcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHhhhcchhHHHhhhcc
Q 001071 844 ISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNN 923 (1165)
Q Consensus 844 ~sC~YE~~T~WG~evGw~~gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G~iQIl~sk~~ 923 (1165)
+||+||++|+||+||||.|+|+|||+.||++||++||||+||+|++++|.|++|+++.+++.||+|||.|++||+++|+|
T Consensus 437 ~sC~YE~~T~WG~evG~~ygSitED~~TGl~mh~rGWrSvY~~p~~~AFlG~aP~~l~~~L~Q~~RWa~G~lqI~fsr~n 516 (756)
T PLN02190 437 GHCHYEYQTSWGNTIGWLYDSVAEDLNTSIGIHSRGWTSSYISPDPPAFLGSMPPGGPEAMVQQRRWATGLIEVLFNKQS 516 (756)
T ss_pred cccCCCCCCchhhccCcccceeechHHHHHHHHccCCceEecCCCchhhcCcCCCChHHHhhhhhhHhhhhHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc--ccccccccchhhhhhHHHhhHHHHHHHHHHHHHHHHHhCCcchhcchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001071 924 ALLA--SRRMKFLQRVAYFNVGMYPFTSMFLLVYCILPAVSLFSGQFIVQSLSISFLIYLLAITVTLCMLALLEIKWSGI 1001 (1165)
Q Consensus 924 pL~~--~~~Lsl~QRL~Yl~~~lypl~si~~liylllP~l~LltG~~iip~~s~~fliy~lplfls~~l~slLe~rwsG~ 1001 (1165)
|++. .++|+++|||+|++.++ |++++|+++|+++|++||++|++++|... ++ .+++.+++++++++++|++|+|+
T Consensus 517 Pl~~g~~~~L~l~QRLaYl~~~~-~~~sip~l~Y~~lP~l~Ll~g~~i~P~~~-~~-~~~~~l~~~~~~~~l~E~~~sG~ 593 (756)
T PLN02190 517 PLIGMFCRKIRFRQRLAYLYVFT-CLRSIPELIYCLLPAYCLLHNSALFPKGV-YL-GIIVTLVGMHCLYTLWEFMSLGF 593 (756)
T ss_pred CceeccCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccccCcc-HH-HHHHHHHHHHHHHHHHHHHHcCC
Confidence 9976 48999999999999988 99999999999999999999999999763 33 34445667788889999999999
Q ss_pred ccccccchhhHHHhhhhhhHHHHHHHHHHHHHcCcccceEeCCCCCC------------CCCCCccc-cceeEeecccch
Q 001071 1002 TLHDWWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSAT------------PEDGDDQF-AELYEVKWSFLM 1068 (1165)
Q Consensus 1002 sl~~WWr~qr~W~I~~tsa~L~Av~~aLLk~Lgg~~~~F~VTpKg~~------------~dd~~~~~-~ely~f~wSsLl 1068 (1165)
++++||||||||+|.++++|++|++++++|+|++++++|+||+|... ++++++.| +++|+|+||+++
T Consensus 594 s~~~WWnnqr~w~I~~~sa~l~a~~~~~lK~lg~s~~~F~vTsK~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f~~S~lf 673 (756)
T PLN02190 594 SVQSWYVSQSFWRIKATSSWLFSIQDIILKLLGISKTVFIVTKKTMPETKSGSGSGPSQGEDDGPNSDSGKFEFDGSLYF 673 (756)
T ss_pred cHHHHHhhhheEEeecchHHHHHHHHHHHHHhccccceEEEeeccccccccccccccccccccchhhhcceeEecceehH
Confidence 99999999999999999999999999999999999999999999752 12222333 489999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcC---CCCchhhhHHHHHHHHHHHHhHHHHHHHHhcc-CCCceehhHHHHHHHHHHHH
Q 001071 1069 VPPITIMMVNVIAIAVGVARTMYS---PFPQWSRLIGGVFFSLWVLSHLYPFAKGLMGR-RGKVSTIVFLWSGLISLIIS 1144 (1165)
Q Consensus 1069 iP~~tLllLnLvaIv~Gi~r~i~~---~~~~w~~l~g~l~~~~Wvl~nL~Pf~kgL~gR-~~r~P~~v~~~s~ll~~~~s 1144 (1165)
+|+++++++|++|+++|+++++.. ..+.|+. ++++++++|+++|++||+||||+| |++||++|.+.|++|+.+|.
T Consensus 674 iP~tti~~~Nl~a~~~g~~~~~~~~~s~~~~~~~-l~q~~~~~~vv~~~~P~~~gl~~kdkg~iP~s~~~~s~~l~~~f~ 752 (756)
T PLN02190 674 LPGTFIVLVNLAALAGFLVGLQRSSYSHGGGGSG-LAEACGCILVVMLFLPFLKGLFEKGKYGIPLSTLSKAAFLAVLFV 752 (756)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCccccc-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHH
Confidence 999999999999999988876542 2234554 599999999999999999999955 47899999999999888776
Q ss_pred Hh
Q 001071 1145 LL 1146 (1165)
Q Consensus 1145 ll 1146 (1165)
.+
T Consensus 753 ~~ 754 (756)
T PLN02190 753 VF 754 (756)
T ss_pred hc
Confidence 53
No 10
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=1.7e-198 Score=1754.32 Aligned_cols=713 Identities=33% Similarity=0.591 Sum_probs=638.7
Q ss_pred CCCCCceEEecccccccchhhHHHHHHHHHHHHHHHHHhccCCCch-hhHHHHHHHHHHHHHHHHHHhhcccceeecccc
Q 001071 287 RCRRPLARKIGVSTAIISPYRLIIVTRLAALALFLAWRIRHPNREA-MWLWGMSITCEFWFAFSWVFDQLPKLCPVNRVT 365 (1165)
Q Consensus 287 ~~~~pl~r~~~i~~~~~~pyR~~i~~~lv~l~~~l~wRi~~~~~~~-~~lW~~~~~~Eiwfaf~wiL~q~~kw~Pv~R~t 365 (1165)
....||..+++++++++ ||+++++++++++++|+||++|.+.++ .|+|+++++||+||+|+|+|+|++||+||+|.|
T Consensus 9 ~~~~pL~~~~~~~~~~~--~R~~~~~~~~~i~~ll~~r~~~~~~~~~~~~w~~~~~~e~wf~f~W~l~q~~k~~Pv~r~~ 86 (734)
T PLN02893 9 TGAPPLHTCHPMRRTIA--NRVFAVVYSCAILALLYHHVIALLHSTTTLITLLLLLADIVLAFMWATTQAFRMCPVHRRV 86 (734)
T ss_pred CCCCCceeeeecCCchH--HHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 35678999999888875 999999999999999999999987764 899999999999999999999999999999999
Q ss_pred chhhHHhhhcCCCCCCCCCCCCCCcccEEEeCCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhHHHHHHH
Q 001071 366 DLTVLKDRFESPNLCNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGALLTFEALAET 445 (1165)
Q Consensus 366 ~~d~L~~r~~~~~~~~p~~~~~LP~VDVFV~TaDP~kEPp~vt~nTVLSilA~DYP~~Kls~YvsDDG~s~lTf~al~Ea 445 (1165)
|+|||+++++ .++||+||||||||||.||||++|+||||||||+|||+|||+|||||||||+||||||.||
T Consensus 87 ~~~~L~~~~~---------~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~Ea 157 (734)
T PLN02893 87 FIEHLEHYAK---------ESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFMEA 157 (734)
T ss_pred CHHHHhhhcc---------cccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHHH
Confidence 9999997764 4789999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhhhhcCCCCCChhhhhhhccccccccchhhhHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHH
Q 001071 446 ASFARIWVPFCRKHNIEPRNPEAYFEQKRNFLKNKIRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRA 525 (1165)
Q Consensus 446 a~FA~~WvPFCkK~~IepR~Pe~YFs~k~~~~~~~~~~~f~~e~~~mKreYeefk~rI~~l~~~~~~~~~~~~~~ee~~~ 525 (1165)
|+|||+||||||||||||||||+||+++. ++|++||++||+||||||+|||++++.++++.+.++..+|.+
T Consensus 158 a~FA~~WvPFCrk~~ie~R~P~~YF~~~~--------~~~~~e~~~~k~~Yee~k~ri~~~~~~~~~~~~~~~~~~~~~- 228 (734)
T PLN02893 158 AKFATHWLPFCKKNKIVERCPEAYFSSNS--------HSWSPETEQIKMMYESMKVRVENVVERGKVSTDYITCDQERE- 228 (734)
T ss_pred HHHHHhhcccccccCCCcCCHHHHhccCC--------CccchHHHHHHHHHHHHHHHHHHHHhcCcCchhhhhhccccc-
Confidence 99999999999999999999999999872 467899999999999999999999998887776555544310
Q ss_pred HHHHhhcCCCCCCcccCCcccccCCCCCCCCCcCCCCCCCCCCCccceEEeecCCCCCCCCCCcccCCCCcccccccccc
Q 001071 526 KKKQMEMGGSTAEPVKVPKATWMSDGSHWPGTWTSGEPDHSRGDHAGIIQAMLAPPNAEPVFGVEADGENLIDSTEVDVR 605 (1165)
Q Consensus 526 ~~~~~~~~~~~~~~~~~p~~~wm~dgt~wpg~w~~~~~~~~~~dH~~iiqv~l~~~~~~~~~g~~~~~~~~~D~~~~~~~ 605 (1165)
..+.|+ +|++++|||+||||+++++++ .|++|+ +
T Consensus 229 ------------------------~f~~w~-------~~~~~~dH~~ivqV~l~~~~~-------------~d~~g~--~ 262 (734)
T PLN02893 229 ------------------------AFSRWT-------DKFTRQDHPTVIQVLLESGKD-------------KDITGH--T 262 (734)
T ss_pred ------------------------ccccCc-------CCCCCCCCCceeeeeccCCCc-------------cchhhc--c
Confidence 112333 468999999999999998521 255664 7
Q ss_pred cCcEEEEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhc-CCCceEEEecCeee
Q 001071 606 LPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDR-GGDRICYVQFPQRF 684 (1165)
Q Consensus 606 lP~LvYvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~-~g~~vafVQfPQ~F 684 (1165)
||+|||||||||||++||+||||||+++||||+|||||||||||||||+|||++||+|||||+|+ .++++|||||||+|
T Consensus 263 lP~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n~p~~l~~amcff~Dp~~~~~vafVQfPQ~F 342 (734)
T PLN02893 263 MPNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSNDPQTPLRALCYLLDPSMDPKLGYVQFPQIF 342 (734)
T ss_pred CCceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCCchhHHHHHHHHhcCCCcCCceEEEeCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998 57899999999999
Q ss_pred cCCCCCCcccchhHHHHHhhccccccCCCceeccccchhhhhhhcCCCCCCcccccCccccchhhhcccCcccccccccc
Q 001071 685 EGIDPNDRYANHNTVFFDVAMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDE 764 (1165)
Q Consensus 685 ~nid~~Dry~n~~~vFfdi~~~glDG~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (1165)
+|++++|+|+|++++||+++|+|+||+|||+||||||+|||+||||..+....+
T Consensus 343 ~~i~~~D~y~~~~~vff~~~~~glDG~~gp~y~GTGc~~RR~al~G~~~~~~~~-------------------------- 396 (734)
T PLN02893 343 HGINKNDIYAGELKRLFQINMIGMDGLAGPNYVGTGCFFRRRVFYGGPSSLILP-------------------------- 396 (734)
T ss_pred cCCCcCCCCcchhHHHHHHHhhcccccCCceeeccceEEEHHHhcCCCccccch--------------------------
Confidence 999999999999999999999999999999999999999999999963311000
Q ss_pred cccccCCCCCCChhhHhhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHHhHhc
Q 001071 765 IALPINGDHNDDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVI 844 (1165)
Q Consensus 765 ~~~~~~~~~~~~~~e~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea~~v~ 844 (1165)
+. ..++++.... +...+.++++||++|+
T Consensus 397 --------------~~------~~~~~~~~~~--------------------------------~~~~~~~~~~~a~~v~ 424 (734)
T PLN02893 397 --------------EI------PELNPDHLVD--------------------------------KSIKSQEVLALAHHVA 424 (734)
T ss_pred --------------hh------hhcccccccc--------------------------------cccchHHHHHHhhhcc
Confidence 00 0011111111 1123467899999999
Q ss_pred ccccccccccccccccccCcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHhhhcchhHHHhhhccc
Q 001071 845 SCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNA 924 (1165)
Q Consensus 845 sC~YE~~T~WG~evGw~~gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G~iQIl~sk~~p 924 (1165)
||+||++|+||+||||.|+|+|||+.||++||++||||+||+|++++|.|++|+|+.++++||+|||+|++||+++|+||
T Consensus 425 sC~ye~~t~WG~~~G~~ygsvtED~~Tg~~lh~~GWrSvY~~p~~~af~G~aP~~l~~~l~Q~~RWa~G~lqI~~s~~nP 504 (734)
T PLN02893 425 GCNYENQTNWGSKMGFRYGSLVEDYYTGYRLQCEGWKSIFCNPKRPAFLGDSPINLHDVLNQQKRWSVGLLEVAFSKYSP 504 (734)
T ss_pred ccccccCCccccccceEeccccccHHHHHHHHhcCCcEEecCCCchhhccCCCCCHHHHHHHHHHHHhhhHHHHhhccCc
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred ccc-ccccccccchhhhhhHHHhhHHHHHHHHHHHHHHHHHhCCcchhcchHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 001071 925 LLA-SRRMKFLQRVAYFNVGMYPFTSMFLLVYCILPAVSLFSGQFIVQSLSISFLIYLLAITVTLCMLALLEIKWSGITL 1003 (1165)
Q Consensus 925 L~~-~~~Lsl~QRL~Yl~~~lypl~si~~liylllP~l~LltG~~iip~~s~~fliy~lplfls~~l~slLe~rwsG~sl 1003 (1165)
++. .++|+++|||+|++.++||++++++++|+++|++||++|++++|..+..++++++++++++++++++|++|+|.++
T Consensus 505 l~~g~~~L~~~Qrl~Y~~~~~~~~~slp~liY~~~P~l~Ll~g~~i~p~~s~~~f~~yi~l~~s~~~~~~lE~~~sG~t~ 584 (734)
T PLN02893 505 ITFGVKSIGLLMGLGYAHYAFWPIWSIPITIYAFLPQLALLNGVSIFPKASDPWFFLYIFLFLGAYGQDLLDFLLSGGTI 584 (734)
T ss_pred hhhcccCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcccccccHHHHHHHHHHHHHHHHHHHHHHhccCccH
Confidence 875 4899999999999999999999999999999999999999999986554444444577888888999999999999
Q ss_pred ccccchhhHHHhhhhhhHHHHHHHHHHHHHcCcccceEeCCCCCCCCCCCcccc-ceeEeec-ccchHHHHHHHHHHHHH
Q 001071 1004 HDWWRNEQFWVIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGDDQFA-ELYEVKW-SFLMVPPITIMMVNVIA 1081 (1165)
Q Consensus 1004 ~~WWr~qr~W~I~~tsa~L~Av~~aLLk~Lgg~~~~F~VTpKg~~~dd~~~~~~-ely~f~w-SsLliP~~tLllLnLva 1081 (1165)
++|||+||||+|.++++|++|++++++|+||+++++|+||+|+. +++..++|. ++|+|+| +++++|+++++++|++|
T Consensus 585 ~~WWn~qr~w~I~~~ss~l~a~l~~iLk~lg~s~~~F~VT~K~~-~~~~~~~y~~~~f~f~~~spl~ip~ttl~llNl~a 663 (734)
T PLN02893 585 QRWWNDQRMWMIRGLSSFLFGLVEFLLKTLGISTFGFNVTSKVV-DEEQSKRYEQGIFEFGVSSPMFLPLTTAAIINLVS 663 (734)
T ss_pred hhhcchheeeehHHHHHHHHHHHHHHHHHhcccCCceeecCCCc-ccccccccccceeeecccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987 444556776 8999996 77899999999999999
Q ss_pred HHHHHHHHHcCCCCchhhhHHHHHHHHHHHHhHHHHHHHHhccCC--CceehhHHHHHHHHHHHHHh
Q 001071 1082 IAVGVARTMYSPFPQWSRLIGGVFFSLWVLSHLYPFAKGLMGRRG--KVSTIVFLWSGLISLIISLL 1146 (1165)
Q Consensus 1082 Iv~Gi~r~i~~~~~~w~~l~g~l~~~~Wvl~nL~Pf~kgL~gR~~--r~P~~v~~~s~ll~~~~sll 1146 (1165)
+++|+++++.+. .|+.+++++++++|++++++||++|||+|++ |||++|++||++|+.++.++
T Consensus 664 ~v~Gi~~~~~~~--~~~~~~~~~~~~~~~v~~~~P~~~gl~~r~dkg~~P~~v~~~s~~l~~~~~~~ 728 (734)
T PLN02893 664 FLWGIAQIFRQR--NLEGLFLQMFLAGFAVVNCWPIYEAMVLRTDDGKLPVKITLISIVLAWALYLA 728 (734)
T ss_pred HHHHHHHHHhCC--chhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccHHHHHHHHHHHHHHH
Confidence 999999988763 5677789999999999999999999999964 89999999999999877654
No 11
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=100.00 E-value=5.9e-64 Score=612.74 Aligned_cols=493 Identities=24% Similarity=0.392 Sum_probs=388.9
Q ss_pred hHHHHHH-HHHHHHHHHHHhccCCC-chh---hHHHHHHHHHHHHHHHHHHhhcccceeeccccchhhHHhhhcCCCCCC
Q 001071 307 RLIIVTR-LAALALFLAWRIRHPNR-EAM---WLWGMSITCEFWFAFSWVFDQLPKLCPVNRVTDLTVLKDRFESPNLCN 381 (1165)
Q Consensus 307 R~~i~~~-lv~l~~~l~wRi~~~~~-~~~---~lW~~~~~~Eiwfaf~wiL~q~~kw~Pv~R~t~~d~L~~r~~~~~~~~ 381 (1165)
|+++++. +++.++|++||++.+.+ ++. .+.++++++|+++.++.++..+..+.|.+|.+.+ .
T Consensus 57 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r~~~~-------------~ 123 (713)
T TIGR03030 57 RLLLLVLSVFISLRYLWWRLTETLPFDNTLNFIFGTLLLLAELYSITILLLGYFQTVRPLDRTPVP-------------L 123 (713)
T ss_pred HHHHHHHHHHHHHHHHHhheeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccC-------------C
Confidence 6665555 55579999999998844 332 3678899999999999999988888888886321 1
Q ss_pred CCCCCCCCcccEEEeCCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhHHHHHHHHhhhhhhhhhhhhcCC
Q 001071 382 PKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGALLTFEALAETASFARIWVPFCRKHNI 461 (1165)
Q Consensus 382 p~~~~~LP~VDVFV~TaDP~kEPp~vt~nTVLSilA~DYP~~Kls~YvsDDG~s~lTf~al~Eaa~FA~~WvPFCkK~~I 461 (1165)
|..++.+|.|||+|||| ||++.++.+|+.|++++|||.+|+.|||.|||+.+=|.
T Consensus 124 ~~~~~~~P~VsViIP~y---NE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~---------------------- 178 (713)
T TIGR03030 124 PLDPEEWPTVDVFIPTY---NEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKR---------------------- 178 (713)
T ss_pred CCCcccCCeeEEEEcCC---CCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCcccc----------------------
Confidence 12246799999999999 99999999999999999999999999999999876110
Q ss_pred CCCChhhhhhhccccccccchhhhHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHHHhhcCCCCCCccc
Q 001071 462 EPRNPEAYFEQKRNFLKNKIRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRAKKKQMEMGGSTAEPVK 541 (1165)
Q Consensus 462 epR~Pe~YFs~k~~~~~~~~~~~f~~e~~~mKreYeefk~rI~~l~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~ 541 (1165)
.++ ++... ++.+-+ ++++++++
T Consensus 179 ------------~~~------~~~~~-------~~~~~~--------------------~~~~~l~~------------- 200 (713)
T TIGR03030 179 ------------NDP------DPEQA-------EAAQRR--------------------EELKEFCR------------- 200 (713)
T ss_pred ------------ccc------hhhhh-------hhhhhH--------------------HHHHHHHH-------------
Confidence 000 01111 110000 11111100
Q ss_pred CCcccccCCCCCCCCCcCCCCCCCCCCCccceEEeecCCCCCCCCCCcccCCCCcccccccccccCcEEEEEecCCCCCC
Q 001071 542 VPKATWMSDGSHWPGTWTSGEPDHSRGDHAGIIQAMLAPPNAEPVFGVEADGENLIDSTEVDVRLPMLVYVSREKRPGYD 621 (1165)
Q Consensus 542 ~p~~~wm~dgt~wpg~w~~~~~~~~~~dH~~iiqv~l~~~~~~~~~g~~~~~~~~~D~~~~~~~lP~LvYvSREKRPg~~ 621 (1165)
++ .+.|+.|++ +
T Consensus 201 ---------------------------------------------------------------~~-~v~yi~r~~----n 212 (713)
T TIGR03030 201 ---------------------------------------------------------------KL-GVNYITRPR----N 212 (713)
T ss_pred ---------------------------------------------------------------Hc-CcEEEECCC----C
Confidence 00 146998887 4
Q ss_pred cCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCCCCC-------ccc
Q 001071 622 HNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPND-------RYA 694 (1165)
Q Consensus 622 Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid~~D-------ry~ 694 (1165)
+|+||||||+.++. ++||||+++||||++ ++++|++++++|.+ ++++++||+||.|+|.|+.+ ++.
T Consensus 213 ~~~KAgnLN~al~~----a~gd~Il~lDAD~v~-~pd~L~~~v~~f~~--dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~ 285 (713)
T TIGR03030 213 VHAKAGNINNALKH----TDGELILIFDADHVP-TRDFLQRTVGWFVE--DPKLFLVQTPHFFVSPDPIERNLGTFRRMP 285 (713)
T ss_pred CCCChHHHHHHHHh----cCCCEEEEECCCCCc-ChhHHHHHHHHHHh--CCCEEEEeCCeeccCCCHHhhhhHHHHHhh
Confidence 66899999999985 689999999999998 69999999999974 28999999999999987643 346
Q ss_pred chhHHHHHhhccccccCCCceeccccchhhhhhhcCCCCCCcccccCccccchhhhcccCcccccccccccccccCCCCC
Q 001071 695 NHNTVFFDVAMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDEIALPINGDHN 774 (1165)
Q Consensus 695 n~~~vFfdi~~~glDG~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1165)
+++..||+.+++|+|.+++++++||++++||+||..
T Consensus 286 ~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~-------------------------------------------- 321 (713)
T TIGR03030 286 NENELFYGLIQDGNDFWNAAFFCGSAAVLRREALDE-------------------------------------------- 321 (713)
T ss_pred hHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHHHH--------------------------------------------
Confidence 788899999999999999999999999999999852
Q ss_pred CChhhHhhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHHhHhccccccccccc
Q 001071 775 DDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVISCFYEDKTEW 854 (1165)
Q Consensus 775 ~~~~e~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~W 854 (1165)
+|
T Consensus 322 -----------------------------iG------------------------------------------------- 323 (713)
T TIGR03030 322 -----------------------------IG------------------------------------------------- 323 (713)
T ss_pred -----------------------------cC-------------------------------------------------
Confidence 11
Q ss_pred ccccccccCcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHhhhcchhHHHhhhccccccccccccc
Q 001071 855 GKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASRRMKFL 934 (1165)
Q Consensus 855 G~evGw~~gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G~iQIl~sk~~pL~~~~~Lsl~ 934 (1165)
||.++++|||++++++||++||+++|+++ +.+.|++|+|++++++||.||++|++|+++. .+|++ .+++++.
T Consensus 324 ----Gf~~~~vtED~~l~~rL~~~G~~~~y~~~--~~~~g~~p~sl~~~~~Qr~RWa~G~~qi~~~-~~pl~-~~gl~~~ 395 (713)
T TIGR03030 324 ----GIAGETVTEDAETALKLHRRGWNSAYLDR--PLIAGLAPETLSGHIGQRIRWAQGMMQIFRL-DNPLL-KRGLSFP 395 (713)
T ss_pred ----CCCCCCcCcHHHHHHHHHHcCCeEEEecc--ccccccCCCCHHHHHHHHHHHhcChHHHHhh-hCccc-cCCCCHH
Confidence 67788999999999999999999999974 5667999999999999999999999999985 46876 6899999
Q ss_pred cchhhhhhHHHhhHHHHHHHHHHHHHHHHHhCCcchhcchHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccchhhHHH
Q 001071 935 QRVAYFNVGMYPFTSMFLLVYCILPAVSLFSGQFIVQSLSISFLIYLLAITVTLCMLALLEIKWSGITLHDWWRNEQFWV 1014 (1165)
Q Consensus 935 QRL~Yl~~~lypl~si~~liylllP~l~LltG~~iip~~s~~fliy~lplfls~~l~slLe~rwsG~sl~~WWr~qr~W~ 1014 (1165)
||++|+++++||+.++++++|+++|++++++|..++++....+++|++|+++...+. .....|.....||++
T Consensus 396 qrl~y~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~~~~~~~~~~~~lp~~~~~~~~---~~~~~~~~~~~~~~~----- 467 (713)
T TIGR03030 396 QRLCYLNAMLFWFFPLPRVIFLTAPLAYLFFGLNIFVASALEILAYALPHMLHSLLT---NSYLFGRVRWPFWSE----- 467 (713)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeCCHHHHHHHHHHHHHHHHHH---HHHHcCCeecchHHH-----
Confidence 999999999999999999999999999999999999998888888888887654432 122345555667853
Q ss_pred hhhhhhHHHHHHHHHHHHHcCcccceEeCCCCCCCCCCCccccceeEeecccchHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 001071 1015 IGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGDDQFAELYEVKWSFLMVPPITIMMVNVIAIAVGVARTMYSPF 1094 (1165)
Q Consensus 1015 I~~tsa~L~Av~~aLLk~Lgg~~~~F~VTpKg~~~dd~~~~~~ely~f~wSsLliP~~tLllLnLvaIv~Gi~r~i~~~~ 1094 (1165)
++++...++.+...+.+++++++.+|+||+|++..+ +.+ .+.+++|+++++++|++|+++|++|......
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~F~VT~Kg~~~~---~~~-------~~~~~~p~~~l~~l~~~~~~~~~~~~~~~~~ 537 (713)
T TIGR03030 468 VYETVLAVYLLPPVLVTLLNPKKPKFNVTPKGELLD---EDY-------FSPLSRPYLILFALILAGLAFGLYRIYGYPI 537 (713)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCCceecCCCcccc---ccc-------cchHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 444444556666777778899999999999987221 211 1247899999999999999999999865432
Q ss_pred CchhhhHHHHHHHHHHHHhHHHHHHHHh
Q 001071 1095 PQWSRLIGGVFFSLWVLSHLYPFAKGLM 1122 (1165)
Q Consensus 1095 ~~w~~l~g~l~~~~Wvl~nL~Pf~kgL~ 1122 (1165)
. ..+.+++.+|.++|++.+.-++.
T Consensus 538 ~----~~~~~~~~~w~~~n~~~~~~~~~ 561 (713)
T TIGR03030 538 E----RGVLLVVLGWNLLNLILLGAALA 561 (713)
T ss_pred c----cchhhHHHHHHHHHHHHHHHHHH
Confidence 1 23567899999999998888776
No 12
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=100.00 E-value=5.5e-64 Score=615.00 Aligned_cols=475 Identities=26% Similarity=0.452 Sum_probs=379.3
Q ss_pred HHHHHHHHHHHHHHHHhccCCC-c---hhhHHHHHHHHHHHHHHHHHHhhcccceeeccccchhhHHhhhcCCCCCCCCC
Q 001071 309 IIVTRLAALALFLAWRIRHPNR-E---AMWLWGMSITCEFWFAFSWVFDQLPKLCPVNRVTDLTVLKDRFESPNLCNPKG 384 (1165)
Q Consensus 309 ~i~~~lv~l~~~l~wRi~~~~~-~---~~~lW~~~~~~Eiwfaf~wiL~q~~kw~Pv~R~t~~d~L~~r~~~~~~~~p~~ 384 (1165)
++++.+++.++|++||++.+.+ + +..+.++++++|+++.++.++..+..+.|..|.+. | .|..
T Consensus 189 l~~l~~~~~~rY~~WR~~~tL~~~~~~~~~~~~~ll~ae~~~~~~~~lg~~~~~~~~~r~~~----------~---~~~~ 255 (852)
T PRK11498 189 LIVLSLTVSCRYIWWRYTSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPV----------P---LPKD 255 (852)
T ss_pred HHHHHHHHHHHHHHHHHheeeCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC----------C---CCcc
Confidence 4455667789999999998843 3 45577889999999998999998988889887631 1 1223
Q ss_pred CCCCCcccEEEeCCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhHHHHHHHHhhhhhhhhhhhhcCCCCC
Q 001071 385 RSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGALLTFEALAETASFARIWVPFCRKHNIEPR 464 (1165)
Q Consensus 385 ~~~LP~VDVFV~TaDP~kEPp~vt~nTVLSilA~DYP~~Kls~YvsDDG~s~lTf~al~Eaa~FA~~WvPFCkK~~IepR 464 (1165)
.+.+|.|||+|||| |||..++.+||.+++++|||.+|+.|||.|||.++
T Consensus 256 ~~~~P~VsViIPtY---NE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D---------------------------- 304 (852)
T PRK11498 256 MSLWPTVDIFVPTY---NEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGRE---------------------------- 304 (852)
T ss_pred cCCCCcEEEEEecC---CCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCCh----------------------------
Confidence 46789999999999 99999999999999999999999999999999876
Q ss_pred ChhhhhhhccccccccchhhhHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHHHhhcCCCCCCcccCCc
Q 001071 465 NPEAYFEQKRNFLKNKIRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRAKKKQMEMGGSTAEPVKVPK 544 (1165)
Q Consensus 465 ~Pe~YFs~k~~~~~~~~~~~f~~e~~~mKreYeefk~rI~~l~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~p~ 544 (1165)
+.+++. +|
T Consensus 305 ------------------------------~t~~la--------------------~~---------------------- 312 (852)
T PRK11498 305 ------------------------------EFRQFA--------------------QE---------------------- 312 (852)
T ss_pred ------------------------------HHHHHH--------------------HH----------------------
Confidence 000111 00
Q ss_pred ccccCCCCCCCCCcCCCCCCCCCCCccceEEeecCCCCCCCCCCcccCCCCcccccccccccCcEEEEEecCCCCCCcCC
Q 001071 545 ATWMSDGSHWPGTWTSGEPDHSRGDHAGIIQAMLAPPNAEPVFGVEADGENLIDSTEVDVRLPMLVYVSREKRPGYDHNK 624 (1165)
Q Consensus 545 ~~wm~dgt~wpg~w~~~~~~~~~~dH~~iiqv~l~~~~~~~~~g~~~~~~~~~D~~~~~~~lP~LvYvSREKRPg~~Hh~ 624 (1165)
.| +.|+.|+++ .|+
T Consensus 313 ------------------------------------------~~--------------------v~yI~R~~n----~~g 326 (852)
T PRK11498 313 ------------------------------------------VG--------------------VKYIARPTH----EHA 326 (852)
T ss_pred ------------------------------------------CC--------------------cEEEEeCCC----Ccc
Confidence 01 348888753 458
Q ss_pred chhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCCCCC-------cccchh
Q 001071 625 KAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPND-------RYANHN 697 (1165)
Q Consensus 625 KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid~~D-------ry~n~~ 697 (1165)
||||+|..++. ++||||+++||||++ ++++|+++|.+|.++ +++|+||+||.|+|.|+.+ .+.+++
T Consensus 327 KAGnLN~aL~~----a~GEyIavlDAD~ip-~pdfL~~~V~~f~~d--P~VglVQtp~~f~n~dp~~rnl~~~~~~~~e~ 399 (852)
T PRK11498 327 KAGNINNALKY----AKGEFVAIFDCDHVP-TRSFLQMTMGWFLKD--KKLAMMQTPHHFFSPDPFERNLGRFRKTPNEG 399 (852)
T ss_pred hHHHHHHHHHh----CCCCEEEEECCCCCC-ChHHHHHHHHHHHhC--CCeEEEEcceeccCCchHHHhhHHHhhcccch
Confidence 99999999885 689999999999997 799999999987631 8999999999999987743 246788
Q ss_pred HHHHHhhccccccCCCceeccccchhhhhhhcCCCCCCcccccCccccchhhhcccCcccccccccccccccCCCCCCCh
Q 001071 698 TVFFDVAMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDEIALPINGDHNDDD 777 (1165)
Q Consensus 698 ~vFfdi~~~glDG~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (1165)
+.||+..++|+|.+++++++||++++||+||..
T Consensus 400 ~~fy~~iq~g~~~~~a~~~~Gs~aviRReaLee----------------------------------------------- 432 (852)
T PRK11498 400 TLFYGLVQDGNDMWDATFFCGSCAVIRRKPLDE----------------------------------------------- 432 (852)
T ss_pred hHHHHHHHhHHHhhcccccccceeeeEHHHHHH-----------------------------------------------
Confidence 899999999999999999999999999999852
Q ss_pred hhHhhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHHhHhcccccccccccccc
Q 001071 778 ADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVISCFYEDKTEWGKR 857 (1165)
Q Consensus 778 ~e~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WG~e 857 (1165)
+|
T Consensus 433 --------------------------VG---------------------------------------------------- 434 (852)
T PRK11498 433 --------------------------IG---------------------------------------------------- 434 (852)
T ss_pred --------------------------hc----------------------------------------------------
Confidence 12
Q ss_pred cccccCcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHhhhcchhHHHhhhccccccccccccccch
Q 001071 858 VGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASRRMKFLQRV 937 (1165)
Q Consensus 858 vGw~~gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G~iQIl~sk~~pL~~~~~Lsl~QRL 937 (1165)
||+++++|||++++++||++||+++|+++ +...|++|+|+.++++||.||++|++|+++. ++|++ .++|++.||+
T Consensus 435 -Gfd~~titED~dlslRL~~~Gyrv~yl~~--~~a~glaPesl~~~~~QR~RWarG~lQi~r~-~~pl~-~~gL~~~qRl 509 (852)
T PRK11498 435 -GIAVETVTEDAHTSLRLHRRGYTSAYMRI--PQAAGLATESLSAHIGQRIRWARGMVQIFRL-DNPLT-GKGLKLAQRL 509 (852)
T ss_pred -CCCCCccCccHHHHHHHHHcCCEEEEEec--cceeEECCCCHHHHHHHHHHHHHHHHHHHHH-hChhc-cCCCCHHHHH
Confidence 78888999999999999999999999974 5557999999999999999999999999984 67886 7899999999
Q ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHHHhCCcchhcchHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccchhhHHHhhh
Q 001071 938 AYFNVGMYPFTSMFLLVYCILPAVSLFSGQFIVQSLSISFLIYLLAITVTLCMLALLEIKWSGITLHDWWRNEQFWVIGG 1017 (1165)
Q Consensus 938 ~Yl~~~lypl~si~~liylllP~l~LltG~~iip~~s~~fliy~lplfls~~l~slLe~rwsG~sl~~WWr~qr~W~I~~ 1017 (1165)
+|+++++|++.+++.++|+++|++||++|+.++.+....+++|++|+++...++ ....+|.....||++ +++
T Consensus 510 ~y~~~~l~~l~g~~~l~~l~~Pl~~l~~gi~~i~a~~~~i~~y~lP~~~~~~l~---~~~~~g~~r~~~wse-----iye 581 (852)
T PRK11498 510 CYANAMLHFLSGIPRLIFLTAPLAFLLLHAYIIYAPALMIALFVLPHMIHASLT---NSRIQGKYRHSFWSE-----IYE 581 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChheeCChHHHHHHHHHHHHHHHHH---HHHhcCcchHhHHHH-----HHH
Confidence 999999999999999999999999999999999887778888888987654332 223344433445532 334
Q ss_pred hhhHHHHHHHHHHHHHcCcccceEeCCCCCCCCCCCccccceeEeecccchHHHHHHHHHHHHHHHHHHHHHHcCCCCch
Q 001071 1018 TSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGDDQFAELYEVKWSFLMVPPITIMMVNVIAIAVGVARTMYSPFPQW 1097 (1165)
Q Consensus 1018 tsa~L~Av~~aLLk~Lgg~~~~F~VTpKg~~~dd~~~~~~ely~f~wSsLliP~~tLllLnLvaIv~Gi~r~i~~~~~~w 1097 (1165)
+....+.....+..++++++.+|+||+|+...+ +. . |+|. +..|+++++++|++|+++|+++...+...
T Consensus 582 ~v~a~~l~~~~~~~ll~p~~~~F~VTpKg~~~~---~~---~--~~~~-~~~P~~~L~~L~l~gl~~g~~r~~~~~~~-- 650 (852)
T PRK11498 582 TVLAWYIAPPTTVALFNPHKGKFNVTAKGGLVE---EE---Y--VDWV-ISRPYIFLVLLNLVGVAVGIWRYFYGPPN-- 650 (852)
T ss_pred HHHHHHHHHHHHHHHcCccCCCcccCCCCcccc---cc---c--eehH-HHHHHHHHHHHHHHHHHHHHHHHHhCCcc--
Confidence 333333333344447889999999999987221 11 2 3443 56799999999999999999998764321
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHh
Q 001071 1098 SRLIGGVFFSLWVLSHLYPFAKGLM 1122 (1165)
Q Consensus 1098 ~~l~g~l~~~~Wvl~nL~Pf~kgL~ 1122 (1165)
...+.+++.+|+++|++.+.-++.
T Consensus 651 -~~~~~~~~~~W~~~nl~~l~~a~~ 674 (852)
T PRK11498 651 -EILTVIVSLVWVFYNLIILGGAVA 674 (852)
T ss_pred -cchhhhhhHHHHHHHHHHHHHHHH
Confidence 223566889999999888777665
No 13
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=100.00 E-value=6.7e-33 Score=337.05 Aligned_cols=220 Identities=20% Similarity=0.252 Sum_probs=169.2
Q ss_pred cEEEEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhh-hcCCCceEEEecCeeecC
Q 001071 608 MLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFML-DRGGDRICYVQFPQRFEG 686 (1165)
Q Consensus 608 ~LvYvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~-D~~g~~vafVQfPQ~F~n 686 (1165)
+++|..|+++ +|+||||+|.++|.++ .+++||++||||+++ .+++|++.+.+|. | +++|.||+|+.+.|
T Consensus 193 ~i~yr~R~~n----~~~KaGNl~~~~~~~~--~~~eyivvLDADs~m-~~d~L~~lv~~m~~d---P~vGlVQt~~~~~n 262 (691)
T PRK05454 193 RIFYRRRRRN----VGRKAGNIADFCRRWG--GAYDYMVVLDADSLM-SGDTLVRLVRLMEAN---PRAGLIQTLPVAVG 262 (691)
T ss_pred cEEEEECCcC----CCccHHHHHHHHHhcC--CCcCEEEEEcCCCCC-CHHHHHHHHHHHhhC---cCEEEEeCCccCcC
Confidence 4788888764 5689999999998654 478999999999998 6999999999997 6 89999999999988
Q ss_pred CCCCCcccc----hhHHHHHhhccccccCC--CceeccccchhhhhhhcCCCCCCcccccCccccchhhhcccCcccccc
Q 001071 687 IDPNDRYAN----HNTVFFDVAMRALDGLQ--GPMYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKK 760 (1165)
Q Consensus 687 id~~Dry~n----~~~vFfdi~~~glDG~q--gp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (1165)
.+. .++. ...++.+....|++-+| ...|+|+|+++||+|+.. +| |-
T Consensus 263 ~~s--lfaR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~------------------~~-gl------- 314 (691)
T PRK05454 263 ADT--LFARLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAE------------------HC-GL------- 314 (691)
T ss_pred CCC--HHHHHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHH------------------hc-CC-------
Confidence 752 3322 23455556677887666 456899999999999973 11 10
Q ss_pred cccccccccCCCCCCChhhHhhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHH
Q 001071 761 VDDEIALPINGDHNDDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEA 840 (1165)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea 840 (1165)
.++.|
T Consensus 315 -----------------------------------------p~L~g---------------------------------- 319 (691)
T PRK05454 315 -----------------------------------------PPLPG---------------------------------- 319 (691)
T ss_pred -----------------------------------------ccccc----------------------------------
Confidence 00111
Q ss_pred hHhcccccccccccccccccccCcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHhhhcchhHHHhh
Q 001071 841 ISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFS 920 (1165)
Q Consensus 841 ~~v~sC~YE~~T~WG~evGw~~gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G~iQIl~s 920 (1165)
..||..++++||+++|.+|+++||+++|+++ ...+++++|+|+.++++||.||++|++|++..
T Consensus 320 ----------------~~p~~~~~LseD~~~a~~l~~~GyrV~~~pd-~~~~~ee~P~tl~~~~~qr~RW~~G~lQ~l~~ 382 (691)
T PRK05454 320 ----------------RGPFGGHILSHDFVEAALMRRAGWGVWLAPD-LPGSYEELPPNLLDELKRDRRWCQGNLQHLRL 382 (691)
T ss_pred ----------------cCCCCCCcccHHHHHHHHHHHCCCEEEEcCc-cccccccCCCCHHHHHHHHHHHHhchHHHHHH
Confidence 0267789999999999999999999999963 34568999999999999999999999998752
Q ss_pred hccccccccccccccchhhhhhHHHhhHHHHHHHHH-HHHHHH
Q 001071 921 RNNALLASRRMKFLQRVAYFNVGMYPFTSMFLLVYC-ILPAVS 962 (1165)
Q Consensus 921 k~~pL~~~~~Lsl~QRL~Yl~~~lypl~si~~liyl-llP~l~ 962 (1165)
+ ..+++++.+|++|++.++.++.+...++++ +.+++.
T Consensus 383 ----l-~~~gl~~~~R~~~l~g~~~yl~~P~wll~l~l~~~~~ 420 (691)
T PRK05454 383 ----L-LAKGLHPVSRLHFLTGIMSYLSAPLWLLFLLLGTALA 420 (691)
T ss_pred ----H-HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 368899999999998777776654443333 344333
No 14
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=99.97 E-value=7.9e-31 Score=286.10 Aligned_cols=182 Identities=23% Similarity=0.316 Sum_probs=145.7
Q ss_pred CcEEEEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhh-hcCCCceEEEecCeeec
Q 001071 607 PMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFML-DRGGDRICYVQFPQRFE 685 (1165)
Q Consensus 607 P~LvYvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~-D~~g~~vafVQfPQ~F~ 685 (1165)
++++|++|++++| +||||||.+++..+ ++++||+++|||+.+ .|++|++++.+|. | ++||.||+||+|.
T Consensus 67 ~~v~~~~r~~~~g----~Kag~l~~~~~~~~--~~~~~i~~~DaD~~~-~p~~l~~~v~~~~~~---~~vg~vq~~~~~~ 136 (254)
T cd04191 67 GRIYYRRRRENTG----RKAGNIADFCRRWG--SRYDYMVVLDADSLM-SGDTIVRLVRRMEAN---PRAGIIQTAPKLI 136 (254)
T ss_pred CcEEEEEcCCCCC----ccHHHHHHHHHHhC--CCCCEEEEEeCCCCC-CHHHHHHHHHHHHhC---CCEEEEeCCceeE
Confidence 4588999998654 89999999887422 588999999999998 7999999999997 6 8999999999999
Q ss_pred CCCCC-Ccc-cchhHHHHHhhccccccCCC--ceeccccchhhhhhhcCCCCCCcccccCccccchhhhcccCccccccc
Q 001071 686 GIDPN-DRY-ANHNTVFFDVAMRALDGLQG--PMYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKV 761 (1165)
Q Consensus 686 nid~~-Dry-~n~~~vFfdi~~~glDG~qg--p~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (1165)
|.+.- .+. +-++..|..+.+.|++.+++ .+|+||+.++||+||.... +
T Consensus 137 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~~-------------------~--------- 188 (254)
T cd04191 137 GAETLFARLQQFANRLYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAFMEHC-------------------A--------- 188 (254)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccceEEEEEHHHHHHhc-------------------C---------
Confidence 87632 111 12356677778888887655 5889999999999996310 0
Q ss_pred ccccccccCCCCCCChhhHhhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHHh
Q 001071 762 DDEIALPINGDHNDDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAI 841 (1165)
Q Consensus 762 ~~~~~~~~~~~~~~~~~e~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea~ 841 (1165)
+.+++|
T Consensus 189 ---------------------------------------~~~i~g----------------------------------- 194 (254)
T cd04191 189 ---------------------------------------LPVLPG----------------------------------- 194 (254)
T ss_pred ---------------------------------------CccccC-----------------------------------
Confidence 001221
Q ss_pred HhcccccccccccccccccccCcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHhhhcchhH
Q 001071 842 SVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVE 916 (1165)
Q Consensus 842 ~v~sC~YE~~T~WG~evGw~~gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G~iQ 916 (1165)
-.||..++++||+++|++++.+||+++|.+. ....++++|+|+.++++||.||++|++|
T Consensus 195 ---------------~g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~-~~~~~~~~p~~~~~~~~qr~RW~~G~~q 253 (254)
T cd04191 195 ---------------RPPFGGHILSHDFVEAALMRRAGWEVRLAPD-LEGSYEECPPTLIDFLKRDRRWCQGNLQ 253 (254)
T ss_pred ---------------CCCCCCCeecHHHHHHHHHHHcCCEEEEccC-CcceEeECCCCHHHHHHHHHHHHhhcCc
Confidence 1267789999999999999999999999963 3334789999999999999999999998
No 15
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=4.4e-28 Score=277.29 Aligned_cols=165 Identities=29% Similarity=0.406 Sum_probs=133.1
Q ss_pred CcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCCCCCccc-----c
Q 001071 621 DHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPNDRYA-----N 695 (1165)
Q Consensus 621 ~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid~~Dry~-----n 695 (1165)
.++.|+||+|..+.. +.+++|+++|+|+++ .+++|++++..|.|+ +.+|.+|.||.+.+.++..... .
T Consensus 121 ~~~gK~~al~~~l~~----~~~d~V~~~DaD~~~-~~d~l~~~~~~f~~~--~~~~v~~~~~~~~~~~~~~~l~~~~~~~ 193 (439)
T COG1215 121 KNGGKAGALNNGLKR----AKGDVVVILDADTVP-EPDALRELVSPFEDP--PVGAVVGTPRIRNRPDPSNLLGRIQAIE 193 (439)
T ss_pred cCccchHHHHHHHhh----cCCCEEEEEcCCCCC-ChhHHHHHHhhhcCC--CeeEEeCCceeeecCChhhhcchhcchh
Confidence 466899999987764 469999999999998 799999999999984 4558999999999876411111 1
Q ss_pred hhHHHHHhhccccccCCCceeccccchhhhhhhcCCCCCCcccccCccccchhhhcccCcccccccccccccccCCCCCC
Q 001071 696 HNTVFFDVAMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDEIALPINGDHND 775 (1165)
Q Consensus 696 ~~~vFfdi~~~glDG~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (1165)
....|+-....+.++-...++.|++.+|||+||..
T Consensus 194 ~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~~--------------------------------------------- 228 (439)
T COG1215 194 YLSAFYFRLRAASKGGLISFLSGSSSAFRRSALEE--------------------------------------------- 228 (439)
T ss_pred hhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHHHH---------------------------------------------
Confidence 22233333333444447788899999999999952
Q ss_pred ChhhHhhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHHhHhcccccccccccc
Q 001071 776 DDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVISCFYEDKTEWG 855 (1165)
Q Consensus 776 ~~~e~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WG 855 (1165)
.|
T Consensus 229 ----------------------------~g-------------------------------------------------- 230 (439)
T COG1215 229 ----------------------------VG-------------------------------------------------- 230 (439)
T ss_pred ----------------------------hC--------------------------------------------------
Confidence 11
Q ss_pred cccccccCcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHhhhcchhHHHhh
Q 001071 856 KRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFS 920 (1165)
Q Consensus 856 ~evGw~~gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G~iQIl~s 920 (1165)
||...++|||.+++++||.+|||+.|+++ +.+++++|+|+.++++||.||++|++|++..
T Consensus 231 ---~~~~~~i~ED~~lt~~l~~~G~~~~~~~~--~~~~~~~p~t~~~~~~Qr~RW~~g~~~~~~~ 290 (439)
T COG1215 231 ---GWLEDTITEDADLTLRLHLRGYRVVYVPE--AIVWTEAPETLKELWRQRLRWARGGLQVLLL 290 (439)
T ss_pred ---CCCCCceeccHHHHHHHHHCCCeEEEeec--ceEeeeCcccHHHHHHHHHHHHcccceeeeh
Confidence 68889999999999999999999999974 5678999999999999999999999999974
No 16
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.96 E-value=2e-26 Score=268.65 Aligned_cols=163 Identities=20% Similarity=0.265 Sum_probs=131.0
Q ss_pred CchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCCCC-Cc-ccchhHHHH
Q 001071 624 KKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPN-DR-YANHNTVFF 701 (1165)
Q Consensus 624 ~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid~~-Dr-y~n~~~vFf 701 (1165)
.||+|+|+.++. ++++||+++|+|..+ +|++|++.+-.|.+ +++++.||..++..|.+.. .+ ...+...++
T Consensus 142 Gka~AlN~gl~~----a~~d~iv~lDAD~~~-~~d~L~~lv~~~~~--~~~~g~v~g~~~~~~~~~~~~~~~~~e~~~~~ 214 (444)
T PRK14583 142 GKAIALRMGAAA----ARSEYLVCIDGDALL-DKNAVPYLVAPLIA--NPRTGAVTGNPRIRTRSTLIGRVQVGEFSSII 214 (444)
T ss_pred CHHHHHHHHHHh----CCCCEEEEECCCCCc-CHHHHHHHHHHHHh--CCCeEEEEccceecCCCcchhhHHHHHHHHHH
Confidence 499999998875 589999999999997 79999999998875 3899999998776553211 11 122444556
Q ss_pred HhhccccccCCCcee-ccccchhhhhhhcCCCCCCcccccCccccchhhhcccCcccccccccccccccCCCCCCChhhH
Q 001071 702 DVAMRALDGLQGPMY-VGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDEIALPINGDHNDDDADI 780 (1165)
Q Consensus 702 di~~~glDG~qgp~y-vGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 780 (1165)
....++.+-.+..+. .|++++|||+||..
T Consensus 215 ~~~~~~~~~~g~~~~~sG~~~~~rr~al~~-------------------------------------------------- 244 (444)
T PRK14583 215 GLIKRTQRVYGQVFTVSGVVAAFRRRALAD-------------------------------------------------- 244 (444)
T ss_pred HHHHHHHHHhCCceEecCceeEEEHHHHHH--------------------------------------------------
Confidence 666677666666655 48889999999852
Q ss_pred hhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHHhHhccccccccccccccccc
Q 001071 781 ESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVISCFYEDKTEWGKRVGW 860 (1165)
Q Consensus 781 ~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGw 860 (1165)
+| ||
T Consensus 245 -----------------------vG-----------------------------------------------------g~ 248 (444)
T PRK14583 245 -----------------------VG-----------------------------------------------------YW 248 (444)
T ss_pred -----------------------cC-----------------------------------------------------CC
Confidence 11 78
Q ss_pred ccCcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHhhhcchhHHHhhh
Q 001071 861 IYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSR 921 (1165)
Q Consensus 861 ~~gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G~iQIl~sk 921 (1165)
..+.++||++++++|+.+||++.|++ .+..++++|+|+.++++||.||++|.+|+++.+
T Consensus 249 ~~~~i~ED~dl~~rl~~~G~~i~~~p--~a~~~~~~p~t~~~~~~Qr~RW~~G~~~~~~~~ 307 (444)
T PRK14583 249 SPDMITEDIDISWKLQLKHWSVFFEP--RGLCWILMPETLRGLWKQRLRWAQGGAEVFLKN 307 (444)
T ss_pred CCCcccccHHHHHHHHHcCCeEEEee--ccEEeeeCCCCHHHHHHHHHHHhCcHHHHHHHH
Confidence 88899999999999999999999996 366789999999999999999999999999853
No 17
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.94 E-value=2.2e-24 Score=248.19 Aligned_cols=173 Identities=22% Similarity=0.294 Sum_probs=127.9
Q ss_pred EEEEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCC
Q 001071 609 LVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGID 688 (1165)
Q Consensus 609 LvYvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid 688 (1165)
+.++.++++.| ||+|+|..++. ++++||+++|+|.++ +|++|.+.+..|.. +++++.||...+..|..
T Consensus 111 v~~i~~~~n~G-----ka~aln~g~~~----a~~d~i~~lDaD~~~-~~d~L~~l~~~~~~--~~~v~~v~g~~~~~~~~ 178 (420)
T PRK11204 111 LRVIHLAENQG-----KANALNTGAAA----ARSEYLVCIDGDALL-DPDAAAYMVEHFLH--NPRVGAVTGNPRIRNRS 178 (420)
T ss_pred EEEEEcCCCCC-----HHHHHHHHHHH----cCCCEEEEECCCCCC-ChhHHHHHHHHHHh--CCCeEEEECCceeccch
Confidence 45666555433 99999998875 589999999999997 79999999999963 28999999987776542
Q ss_pred CC-Cc-ccchhHHHHHhhccccccCCCcee-ccccchhhhhhhcCCCCCCcccccCccccchhhhcccCccccccccccc
Q 001071 689 PN-DR-YANHNTVFFDVAMRALDGLQGPMY-VGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDEI 765 (1165)
Q Consensus 689 ~~-Dr-y~n~~~vFfdi~~~glDG~qgp~y-vGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (1165)
.. .+ ...+...++....++..-.+...+ .|++++|||++|..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~----------------------------------- 223 (420)
T PRK11204 179 TLLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGVITAFRKSALHE----------------------------------- 223 (420)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHhCCceEecceeeeeeHHHHHH-----------------------------------
Confidence 11 01 011122222222333222333333 47778888888741
Q ss_pred ccccCCCCCCChhhHhhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHHhHhcc
Q 001071 766 ALPINGDHNDDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVIS 845 (1165)
Q Consensus 766 ~~~~~~~~~~~~~e~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea~~v~s 845 (1165)
+|
T Consensus 224 --------------------------------------vg---------------------------------------- 225 (420)
T PRK11204 224 --------------------------------------VG---------------------------------------- 225 (420)
T ss_pred --------------------------------------hC----------------------------------------
Confidence 11
Q ss_pred cccccccccccccccccCcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHhhhcchhHHHhhh
Q 001071 846 CFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSR 921 (1165)
Q Consensus 846 C~YE~~T~WG~evGw~~gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G~iQIl~sk 921 (1165)
||....++||+++++||+.+||++.|+++ +.++++.|+|++++++||.||++|.+|.++.+
T Consensus 226 -------------g~~~~~~~ED~~l~~rl~~~G~~i~~~p~--~~~~~~~p~t~~~~~~Qr~RW~~G~~~~l~~~ 286 (420)
T PRK11204 226 -------------YWSTDMITEDIDISWKLQLRGWDIRYEPR--ALCWILMPETLKGLWKQRLRWAQGGAEVLLKN 286 (420)
T ss_pred -------------CCCCCcccchHHHHHHHHHcCCeEEeccc--cEEEeECcccHHHHHHHHHHHhcCHHHHHHHH
Confidence 67778899999999999999999999964 56789999999999999999999999999853
No 18
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.94 E-value=5.4e-24 Score=248.33 Aligned_cols=109 Identities=13% Similarity=0.114 Sum_probs=84.6
Q ss_pred ccccCcccchHHHHHHHHh-CCcEEEEeecCCccccccCCCCHHHHHHHhHhhhcchhHHHhhhccccccccccccccch
Q 001071 859 GWIYGSVTEDVVTGYRMHN-RGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASRRMKFLQRV 937 (1165)
Q Consensus 859 Gw~~gSVTEDi~TGlrLh~-rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G~iQIl~sk~~pL~~~~~Lsl~QRL 937 (1165)
||+.++++||++++++++. .|++..|+++ +.++.++|+|++++++||.||++|.+|++....++.. +.+.++.+++
T Consensus 232 gf~~~~i~ED~~l~~rl~~~~g~kv~~~~~--a~~~~~~p~t~~~~~~QR~RW~rG~~qv~~~~~~~~~-~~~~~~~~~~ 308 (439)
T TIGR03111 232 LYNSETVGEDTDMTFQIRELLDGKVYLCEN--AIFYVDPIDGLNKLYTQRQRWQRGELEVSHMFFESAN-KSIKGFFSNF 308 (439)
T ss_pred CCCCCCcCccHHHHHHHHHhcCCeEEECCC--CEEEEECCcCHHHHHHHHHHHhccHHHHHHHHHhhhh-hchhhhhhHH
Confidence 7888899999999999985 6899999864 6678899999999999999999999999975433333 3456666666
Q ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHHHhCCcch
Q 001071 938 AYFNVGMYPFTSMFLLVYCILPAVSLFSGQFIV 970 (1165)
Q Consensus 938 ~Yl~~~lypl~si~~liylllP~l~LltG~~ii 970 (1165)
.+...+..+...++.+++.++++++.+++..+.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (439)
T TIGR03111 309 MVRRIMYDHTFAFPRMIWYFAMIFLIFLGYPVK 341 (439)
T ss_pred HHHHHHhhHhhHHHHHHHHHHHHHHHHhccHHH
Confidence 554444455557787888888888887775444
No 19
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.91 E-value=1.9e-22 Score=238.88 Aligned_cols=196 Identities=23% Similarity=0.262 Sum_probs=137.3
Q ss_pred CCchhhhHHHHhhcc--ccCCC---CEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCCCCCc----c
Q 001071 623 NKKAGAMNALVRTSA--IMSNG---PFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPNDR----Y 693 (1165)
Q Consensus 623 h~KAGAlNallRvSa--v~sng---pfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid~~Dr----y 693 (1165)
+.||+|||.+++... -...| ++|+++|||.++ +|++|+....++ ++.++||.|....+.+.+.. |
T Consensus 135 ~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v-~Pd~Lr~~~~~~-----~~~~~VQ~pv~~~~~~~~~~~ag~y 208 (504)
T PRK14716 135 TSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVI-HPLELRLYNYLL-----PRHDFVQLPVFSLPRDWGEWVAGTY 208 (504)
T ss_pred CCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCc-CccHHHHHHhhc-----CCCCEEecceeccCCchhHHHHHHH
Confidence 479999998876421 01234 999999999998 799998654333 34568999988665433322 3
Q ss_pred cchhHHHHHhhccccccCCCce-eccccchhhhhhhcCCCCCCcccccCccccchhhhcccCcccccccccccccccCCC
Q 001071 694 ANHNTVFFDVAMRALDGLQGPM-YVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDEIALPINGD 772 (1165)
Q Consensus 694 ~n~~~vFfdi~~~glDG~qgp~-yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (1165)
..+....+...++.++.+++++ ..|||++|||++|..+
T Consensus 209 ~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~l----------------------------------------- 247 (504)
T PRK14716 209 MDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALERL----------------------------------------- 247 (504)
T ss_pred HHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHHHH-----------------------------------------
Confidence 3333333555677788999887 4899999999999620
Q ss_pred CCCChhhHhhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHHhHhccccccccc
Q 001071 773 HNDDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVISCFYEDKT 852 (1165)
Q Consensus 773 ~~~~~~e~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T 852 (1165)
..+-||
T Consensus 248 ----------------------------~~~~GG---------------------------------------------- 253 (504)
T PRK14716 248 ----------------------------AAERGG---------------------------------------------- 253 (504)
T ss_pred ----------------------------HhhcCC----------------------------------------------
Confidence 000011
Q ss_pred ccccccccccCcccchHHHHHHHHhCCcEEEEeecCC-------------ccccccCCCCHHHHHHHhHhhhcch-hHHH
Q 001071 853 EWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKR-------------DAFRGTAPINLTDRLHQVLRWATGS-VEIF 918 (1165)
Q Consensus 853 ~WG~evGw~~gSVTEDi~TGlrLh~rGWrSvY~~p~r-------------~af~GlAPeTL~~~l~QR~RWA~G~-iQIl 918 (1165)
.+|..+++|||+++|++|+.+|||++|++... .+.++++|+|++++++||.||++|. +|..
T Consensus 254 -----~~fd~~sLTED~dLglRL~~~G~rv~y~p~ai~~~~~~~~~~~~~v~t~e~~P~t~~a~~rQR~RW~~Gi~~Q~~ 328 (504)
T PRK14716 254 -----QPFDSDSLTEDYDIGLRLKRAGFRQIFVRVRADDTTDRPDRRGEPIATREFFPDTFKAAVRQKARWIYGIAFQGW 328 (504)
T ss_pred -----CCCCCCCcchHHHHHHHHHHCCCEEEEecccccccccccccccccccccccCccCHHHHHHHHHHHHhchHHhhH
Confidence 13889999999999999999999999986420 2356889999999999999999995 7887
Q ss_pred hhhccc-cccccccccccchhhhhhHH
Q 001071 919 FSRNNA-LLASRRMKFLQRVAYFNVGM 944 (1165)
Q Consensus 919 ~sk~~p-L~~~~~Lsl~QRL~Yl~~~l 944 (1165)
...... -+..+.+.|++|...+...+
T Consensus 329 ~~~gw~~~~~~~~~~~rdr~~~~~~~~ 355 (504)
T PRK14716 329 ERLGWKGPAATKYMLWRDRKGLLTNLL 355 (504)
T ss_pred HhcCCCCchhhhhhHHHHHHHHHHHHH
Confidence 531110 11134566778877776544
No 20
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=99.90 E-value=3.3e-25 Score=198.41 Aligned_cols=64 Identities=34% Similarity=0.799 Sum_probs=33.6
Q ss_pred CCCCCcceeecCCCccccc-----cc-ccCCccchhhhhhhhcCCCCCCCCCCCccccCC-----CCCccccccc
Q 001071 145 VKSGLICGMKGCDEKVMQN-----KC-DCGFKICRECYLECAGNGGGRCPGCKEPYKDAS-----DGEIEDEVIS 208 (1165)
Q Consensus 145 ~~~g~~C~i~gcd~~~~~d-----~C-eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~~~-----~~~~e~~~~~ 208 (1165)
.++||+|||||++++++.| || ||+|||||+|||||+|||+|+||||||+||||| +||+||||.|
T Consensus 6 ~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~V~gDeeedd~d 80 (80)
T PF14569_consen 6 NLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSPRVEGDEEEDDVD 80 (80)
T ss_dssp --SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT----TTS-----S-
T ss_pred hcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCCCCCCCccccCCC
Confidence 6899999999999999988 99 999999999999999999999999999999999 8888877654
No 21
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.88 E-value=8.1e-22 Score=205.61 Aligned_cols=170 Identities=35% Similarity=0.581 Sum_probs=137.9
Q ss_pred EEEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCCC
Q 001071 610 VYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDP 689 (1165)
Q Consensus 610 vYvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid~ 689 (1165)
+|+.+++.. ..|+||+|..++. .+++||+.+|+|.++ +|++|.+.+..|.+ +++++.||.++.+.+.+.
T Consensus 61 ~~~~~~~~~----~~~~~~~n~~~~~----a~~d~i~~lD~D~~~-~~~~l~~l~~~~~~--~~~~~~v~~~~~~~~~~~ 129 (234)
T cd06421 61 RYLTRPDNR----HAKAGNLNNALAH----TTGDFVAILDADHVP-TPDFLRRTLGYFLD--DPKVALVQTPQFFYNPDP 129 (234)
T ss_pred eEEEeCCCC----CCcHHHHHHHHHh----CCCCEEEEEccccCc-CccHHHHHHHHHhc--CCCeEEEecceEEecCCc
Confidence 455555433 3799999999985 489999999999998 79999999999986 489999999999988776
Q ss_pred CC----cccchhHHHHHhhccccccCCCceeccccchhhhhhhcCCCCCCcccccCccccchhhhcccCccccccccccc
Q 001071 690 ND----RYANHNTVFFDVAMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDEI 765 (1165)
Q Consensus 690 ~D----ry~n~~~vFfdi~~~glDG~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (1165)
.+ .+......|+.....+...+...++.|.+.+|||+++..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~~~----------------------------------- 174 (234)
T cd06421 130 FDWLADGAPNEQELFYGVIQPGRDRWGAAFCCGSGAVVRREALDE----------------------------------- 174 (234)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCceecCceeeEeHHHHHH-----------------------------------
Confidence 42 334455667777777766677788899999999999852
Q ss_pred ccccCCCCCCChhhHhhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHHhHhcc
Q 001071 766 ALPINGDHNDDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVIS 845 (1165)
Q Consensus 766 ~~~~~~~~~~~~~e~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea~~v~s 845 (1165)
+|
T Consensus 175 --------------------------------------ig---------------------------------------- 176 (234)
T cd06421 175 --------------------------------------IG---------------------------------------- 176 (234)
T ss_pred --------------------------------------hC----------------------------------------
Confidence 11
Q ss_pred cccccccccccccccccCcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHhhhcchhHHH
Q 001071 846 CFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIF 918 (1165)
Q Consensus 846 C~YE~~T~WG~evGw~~gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G~iQIl 918 (1165)
||....+.||++++++++.+||++.|++. +..++..|.++..+++||.||.+|++|+|
T Consensus 177 -------------~~~~~~~~eD~~l~~r~~~~g~~i~~~~~--~~~~~~~~~~~~~~~~q~~rw~~~~~~~~ 234 (234)
T cd06421 177 -------------GFPTDSVTEDLATSLRLHAKGWRSVYVPE--PLAAGLAPETLAAYIKQRLRWARGMLQIL 234 (234)
T ss_pred -------------CCCccceeccHHHHHHHHHcCceEEEecC--ccccccCCccHHHHHHHHHHHhcCCeeeC
Confidence 34445667999999999999999999975 55679999999999999999999999864
No 22
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.88 E-value=5.2e-21 Score=234.76 Aligned_cols=171 Identities=20% Similarity=0.299 Sum_probs=125.1
Q ss_pred CCchhhhHHHHhhcccc---CCC--CEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCCCCCc----c
Q 001071 623 NKKAGAMNALVRTSAIM---SNG--PFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPNDR----Y 693 (1165)
Q Consensus 623 h~KAGAlNallRvSav~---sng--pfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid~~Dr----y 693 (1165)
+.||+|||.++....-. +.+ +.++++|||.++ +|++|+ .+-+|.+ ++ ++||.|..-.+...+.. |
T Consensus 132 ~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v-~pd~L~-~~~~l~~---~~-~~VQ~p~~p~~~~~~~~~~~~~ 205 (727)
T PRK11234 132 TSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVI-SPMELR-LFNYLVE---RK-DLIQIPVYPFEREWTHFTSGTY 205 (727)
T ss_pred CCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCC-ChhHHH-HHHhhcC---CC-CeEeecccCCCccHHHHHHHHH
Confidence 36999999888653111 133 468889999998 799998 6788887 45 99999966322221211 3
Q ss_pred cchhHHHHHhhccccccCCCcee-ccccchhhhhhhcCCCCCCcccccCccccchhhhcccCcccccccccccccccCCC
Q 001071 694 ANHNTVFFDVAMRALDGLQGPMY-VGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDEIALPINGD 772 (1165)
Q Consensus 694 ~n~~~vFfdi~~~glDG~qgp~y-vGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (1165)
..+....++..+++++.++|++. .|||++|+|++|.-
T Consensus 206 ~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l~a------------------------------------------ 243 (727)
T PRK11234 206 IDEFAELHGKDVPVREALAGQVPSAGVGTCFSRRAVTA------------------------------------------ 243 (727)
T ss_pred HHHHHHHhhhhhHHHHHcCCCcccCCceEEEecccHHH------------------------------------------
Confidence 34445556677899999988876 69999995554310
Q ss_pred CCCChhhHhhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHHhHhccccccccc
Q 001071 773 HNDDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVISCFYEDKT 852 (1165)
Q Consensus 773 ~~~~~~e~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T 852 (1165)
+.+.||
T Consensus 244 ----------------------------l~~~gg---------------------------------------------- 249 (727)
T PRK11234 244 ----------------------------LLEDGD---------------------------------------------- 249 (727)
T ss_pred ----------------------------HHHhcC----------------------------------------------
Confidence 111221
Q ss_pred ccccccccccCcccchHHHHHHHHhCCcEEEEeecC---------------------CccccccCCCCHHHHHHHhHhhh
Q 001071 853 EWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTK---------------------RDAFRGTAPINLTDRLHQVLRWA 911 (1165)
Q Consensus 853 ~WG~evGw~~gSVTEDi~TGlrLh~rGWrSvY~~p~---------------------r~af~GlAPeTL~~~l~QR~RWA 911 (1165)
..+|..+++|||+++|++|+.+||+++|++.. ..+++++.|+|+.+.++||.||.
T Consensus 250 ----g~~~~~~~lTED~dlg~rL~~~G~~v~f~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~t~~~~~rQR~RW~ 325 (727)
T PRK11234 250 ----GIAFDVQSLTEDYDIGFRLKEKGMREIFVRFPVVDEAKEREQRKFLQHARTSNMICVREYFPDTFSAAVRQKSRWI 325 (727)
T ss_pred ----CCCcCCCcchHHHHHHHHHHHCCCEEEEcccccccccccccccccccccccccceEEEEeCchhHHHHHHHHHHHH
Confidence 12699999999999999999999999999721 13467788999999999999999
Q ss_pred cc-hhHHHh
Q 001071 912 TG-SVEIFF 919 (1165)
Q Consensus 912 ~G-~iQIl~ 919 (1165)
+| .+|.+.
T Consensus 326 ~G~~~q~~~ 334 (727)
T PRK11234 326 IGIVFQGFK 334 (727)
T ss_pred cccHHHHHH
Confidence 99 688875
No 23
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.88 E-value=2.1e-21 Score=204.84 Aligned_cols=167 Identities=23% Similarity=0.348 Sum_probs=126.7
Q ss_pred cEEEEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCC
Q 001071 608 MLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGI 687 (1165)
Q Consensus 608 ~LvYvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~ni 687 (1165)
+++++.+.+++| +||+|+|+.++. ++++||+++|+|.++ +|++|.+.+.++.| +++++||....+.+.
T Consensus 62 ~i~~~~~~~~~G----~k~~a~n~g~~~----a~~~~i~~~DaD~~~-~~~~l~~~~~~~~~---~~v~~v~~~~~~~~~ 129 (232)
T cd06437 62 NIKHVRRADRTG----YKAGALAEGMKV----AKGEYVAIFDADFVP-PPDFLQKTPPYFAD---PKLGFVQTRWGHINA 129 (232)
T ss_pred ceEEEECCCCCC----CchHHHHHHHHh----CCCCEEEEEcCCCCC-ChHHHHHhhhhhcC---CCeEEEecceeeEcC
Confidence 356777766666 599999999985 589999999999998 79999997777666 789999998776654
Q ss_pred CCCC--cc-cchhHHHHHhhccccccCCCce-eccccchhhhhhhcCCCCCCcccccCccccchhhhcccCccccccccc
Q 001071 688 DPND--RY-ANHNTVFFDVAMRALDGLQGPM-YVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDD 763 (1165)
Q Consensus 688 d~~D--ry-~n~~~vFfdi~~~glDG~qgp~-yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (1165)
+.+- ++ .-....+|.....+....+..+ .+|++++|||+++..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~--------------------------------- 176 (232)
T cd06437 130 NYSLLTRVQAMSLDYHFTIEQVARSSTGLFFNFNGTAGVWRKECIED--------------------------------- 176 (232)
T ss_pred CCchhhHhhhhhHHhhhhHhHhhHhhcCCeEEeccchhhhhHHHHHH---------------------------------
Confidence 4321 11 1112224555455544444433 478999999998742
Q ss_pred ccccccCCCCCCChhhHhhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHHhHh
Q 001071 764 EIALPINGDHNDDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISV 843 (1165)
Q Consensus 764 ~~~~~~~~~~~~~~~e~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea~~v 843 (1165)
+|
T Consensus 177 ----------------------------------------vg-------------------------------------- 178 (232)
T cd06437 177 ----------------------------------------AG-------------------------------------- 178 (232)
T ss_pred ----------------------------------------hC--------------------------------------
Confidence 11
Q ss_pred cccccccccccccccccccCcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHhhhcch
Q 001071 844 ISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGS 914 (1165)
Q Consensus 844 ~sC~YE~~T~WG~evGw~~gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G~ 914 (1165)
||....+.||+++++||+.+||+..|++. +.++...|+|+.++++||+||++|.
T Consensus 179 ---------------g~~~~~~~ED~~l~~rl~~~G~~~~~~~~--~~v~~~~~~~~~~~~~q~~rW~~g~ 232 (232)
T cd06437 179 ---------------GWNHDTLTEDLDLSYRAQLKGWKFVYLDD--VVVPAELPASMSAYRSQQHRWSKGP 232 (232)
T ss_pred ---------------CCCCCcchhhHHHHHHHHHCCCeEEEecc--ceeeeeCCcCHHHHHHHHHHhccCC
Confidence 56666788999999999999999999963 6678999999999999999999984
No 24
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.85 E-value=2.7e-20 Score=198.41 Aligned_cols=162 Identities=23% Similarity=0.324 Sum_probs=127.7
Q ss_pred CchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCCCCC---cccchhHHH
Q 001071 624 KKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPND---RYANHNTVF 700 (1165)
Q Consensus 624 ~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid~~D---ry~n~~~vF 700 (1165)
.|++|+|+.++. ++|+||+.+|+|..+ .+++|.+++.+|.+ ..+++++||.+..+.+...+- .+..+...+
T Consensus 71 G~~~a~n~g~~~----a~gd~i~~~DaD~~~-~~~~l~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (241)
T cd06427 71 TKPKACNYALAF----ARGEYVVIYDAEDAP-DPDQLKKAVAAFAR-LDDKLACVQAPLNYYNARENWLTRMFALEYAAW 144 (241)
T ss_pred chHHHHHHHHHh----cCCCEEEEEcCCCCC-ChHHHHHHHHHHHh-cCCCEEEEeCceEeeCCCccHHHHHHHHHHHHH
Confidence 599999999884 689999999999997 69999999999974 237999999998887653221 112223344
Q ss_pred HHhhccccccCCCcee-ccccchhhhhhhcCCCCCCcccccCccccchhhhcccCcccccccccccccccCCCCCCChhh
Q 001071 701 FDVAMRALDGLQGPMY-VGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDEIALPINGDHNDDDAD 779 (1165)
Q Consensus 701 fdi~~~glDG~qgp~y-vGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 779 (1165)
|+..+++....+.++. .|+++++||+++..
T Consensus 145 ~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~------------------------------------------------- 175 (241)
T cd06427 145 FDYLLPGLARLGLPIPLGGTSNHFRTDVLRE------------------------------------------------- 175 (241)
T ss_pred HHHHHHHHHhcCCeeecCCchHHhhHHHHHH-------------------------------------------------
Confidence 5666677776666654 57888999998852
Q ss_pred HhhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHHhHhcccccccccccccccc
Q 001071 780 IESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVISCFYEDKTEWGKRVG 859 (1165)
Q Consensus 780 ~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WG~evG 859 (1165)
+| |
T Consensus 176 ------------------------vg-----------------------------------------------------g 178 (241)
T cd06427 176 ------------------------LG-----------------------------------------------------G 178 (241)
T ss_pred ------------------------cC-----------------------------------------------------C
Confidence 11 4
Q ss_pred cccCcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHhhhcchhHHHhh
Q 001071 860 WIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFS 920 (1165)
Q Consensus 860 w~~gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G~iQIl~s 920 (1165)
|.....+||++.++|++.+||+..|++. ..+...|+|+..+++||.||++|.+|++..
T Consensus 179 ~~~~~~~eD~~l~~rl~~~G~r~~~~~~---~~~~~~~~~~~~~~~q~~Rw~~g~~~~~~~ 236 (241)
T cd06427 179 WDPFNVTEDADLGLRLARAGYRTGVLNS---TTLEEANNALGNWIRQRSRWIKGYMQTWLV 236 (241)
T ss_pred CCcccchhhHHHHHHHHHCCceEEEecc---cccccCcHhHHHHHHHHHHHhccHHHHHHH
Confidence 5555678999999999999999999953 346899999999999999999999999974
No 25
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.84 E-value=1.6e-19 Score=190.07 Aligned_cols=171 Identities=30% Similarity=0.454 Sum_probs=128.0
Q ss_pred EEEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCCC
Q 001071 610 VYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDP 689 (1165)
Q Consensus 610 vYvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid~ 689 (1165)
.++..++++| .||||+|..++... .+++||+.+|+|-.+ .|++|.+.+.+|.+ ++++.||.++.+.+...
T Consensus 59 ~~i~~~~~~G----~~~~a~n~g~~~a~--~~~d~i~~lD~D~~~-~~~~l~~l~~~~~~---~~~~~v~~~~~~~~~~~ 128 (236)
T cd06435 59 RFFHVEPLPG----AKAGALNYALERTA--PDAEIIAVIDADYQV-EPDWLKRLVPIFDD---PRVGFVQAPQDYRDGEE 128 (236)
T ss_pred EEEEcCCCCC----CchHHHHHHHHhcC--CCCCEEEEEcCCCCc-CHHHHHHHHHHhcC---CCeeEEecCccccCCCc
Confidence 3555554444 59999999888632 468999999999886 79999999999875 79999999876654321
Q ss_pred CCccc----chhHHHHHhhccccccCCCceeccccchhhhhhhcCCCCCCcccccCccccchhhhcccCccccccccccc
Q 001071 690 NDRYA----NHNTVFFDVAMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDEI 765 (1165)
Q Consensus 690 ~Dry~----n~~~vFfdi~~~glDG~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (1165)
. .+. .....+|...++.....+..+..|+++++||+++..
T Consensus 129 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~----------------------------------- 172 (236)
T cd06435 129 S-LFKRMCYAEYKGFFDIGMVSRNERNAIIQHGTMCLIRRSALDD----------------------------------- 172 (236)
T ss_pred c-HHHHHHhHHHHHHHHHHhccccccCceEEecceEEEEHHHHHH-----------------------------------
Confidence 1 111 111223334444444455566678888899988742
Q ss_pred ccccCCCCCCChhhHhhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHHhHhcc
Q 001071 766 ALPINGDHNDDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVIS 845 (1165)
Q Consensus 766 ~~~~~~~~~~~~~e~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea~~v~s 845 (1165)
+|
T Consensus 173 --------------------------------------iG---------------------------------------- 174 (236)
T cd06435 173 --------------------------------------VG---------------------------------------- 174 (236)
T ss_pred --------------------------------------hC----------------------------------------
Confidence 11
Q ss_pred cccccccccccccccccCcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHhhhcchhHHHh
Q 001071 846 CFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFF 919 (1165)
Q Consensus 846 C~YE~~T~WG~evGw~~gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G~iQIl~ 919 (1165)
||......||+++++|++.+||+..|++. ...+...|+|+.++++||.||++|++|++.
T Consensus 175 -------------gf~~~~~~eD~dl~~r~~~~G~~~~~~~~--~~~~~~~~~~~~~~~~q~~rw~~g~~~~~~ 233 (236)
T cd06435 175 -------------GWDEWCITEDSELGLRMHEAGYIGVYVAQ--SYGHGLIPDTFEAFKKQRFRWAYGAVQILK 233 (236)
T ss_pred -------------CCCCccccchHHHHHHHHHCCcEEEEcch--hhccCcCcccHHHHHHHHHHHhcchhhhhh
Confidence 46556678999999999999999999964 455789999999999999999999999987
No 26
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.82 E-value=8.4e-21 Score=198.35 Aligned_cols=165 Identities=27% Similarity=0.377 Sum_probs=104.3
Q ss_pred EEEEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCC
Q 001071 609 LVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGID 688 (1165)
Q Consensus 609 LvYvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid 688 (1165)
+.++.+.+++| ...|++|+|..++. ..+++|+++|+|.++ +|++|++++.+|.+ ++++.||.+..+++ +
T Consensus 60 v~vi~~~~~~g--~~~k~~a~n~~~~~----~~~d~i~~lD~D~~~-~p~~l~~~~~~~~~---~~~~~v~~~~~~~~-~ 128 (228)
T PF13641_consen 60 VRVIRRPRNPG--PGGKARALNEALAA----ARGDYILFLDDDTVL-DPDWLERLLAAFAD---PGVGAVGGPVFPDN-D 128 (228)
T ss_dssp EEEEE----HH--HHHHHHHHHHHHHH-------SEEEEE-SSEEE--CHHHHHHHHHHHB---SS--EEEEEEEETT-C
T ss_pred eEEeecCCCCC--cchHHHHHHHHHHh----cCCCEEEEECCCcEE-CHHHHHHHHHHHHh---CCCCeEeeeEeecC-C
Confidence 34665554332 23699999999885 469999999999998 79999999999966 89999998886664 2
Q ss_pred CCCcccchhHHHHHh----hccccccCCCceeccccchhhhhhhcCCCCCCcccccCccccchhhhcccCcccccccccc
Q 001071 689 PNDRYANHNTVFFDV----AMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDE 764 (1165)
Q Consensus 689 ~~Dry~n~~~vFfdi----~~~glDG~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (1165)
.+ .+......+|.. ...+...++.+++.|++++|||++|..
T Consensus 129 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~~~~---------------------------------- 173 (228)
T PF13641_consen 129 RN-WLTRLQDLFFARWHLRFRSGRRALGVAFLSGSGMLFRRSALEE---------------------------------- 173 (228)
T ss_dssp CC-EEEE-TT--S-EETTTS-TT-B----S-B--TEEEEEHHHHHH----------------------------------
T ss_pred CC-HHHHHHHHHHhhhhhhhhhhhcccceeeccCcEEEEEHHHHHH----------------------------------
Confidence 22 222222223211 234445556666789999999999852
Q ss_pred cccccCCCCCCChhhHhhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHHhHhc
Q 001071 765 IALPINGDHNDDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVI 844 (1165)
Q Consensus 765 ~~~~~~~~~~~~~~e~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea~~v~ 844 (1165)
+|
T Consensus 174 ---------------------------------------~g--------------------------------------- 175 (228)
T PF13641_consen 174 ---------------------------------------VG--------------------------------------- 175 (228)
T ss_dssp ---------------------------------------H----------------------------------------
T ss_pred ---------------------------------------hC---------------------------------------
Confidence 11
Q ss_pred ccccccccccccccccccCcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHhhhcc
Q 001071 845 SCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATG 913 (1165)
Q Consensus 845 sC~YE~~T~WG~evGw~~gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G 913 (1165)
||......||++++++++.+||++.|++. ...+...|.|++++++||.||++|
T Consensus 176 --------------~fd~~~~~eD~~l~~r~~~~G~~~~~~~~--~~v~~~~~~~~~~~~~q~~RW~~g 228 (228)
T PF13641_consen 176 --------------GFDPFILGEDFDLCLRLRAAGWRIVYAPD--ALVYHEEPSSLKAFFKQRFRWSRG 228 (228)
T ss_dssp --------------S--SSSSSHHHHHHHHHHHTT--EEEEEE--EEEEE--SSSTHHHHHHHHHHH--
T ss_pred --------------CCCCCCcccHHHHHHHHHHCCCcEEEECC--cEEEEeCCCCHHHHHHHHhccCcC
Confidence 56667788999999999999999999974 667899999999999999999988
No 27
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.78 E-value=4.4e-17 Score=198.84 Aligned_cols=170 Identities=21% Similarity=0.293 Sum_probs=127.4
Q ss_pred CchhhhHHHHhhc---cccCCCCE--EEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCee-ecCCCCC---Cccc
Q 001071 624 KKAGAMNALVRTS---AIMSNGPF--ILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQR-FEGIDPN---DRYA 694 (1165)
Q Consensus 624 ~KAGAlNallRvS---av~sngpf--IlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~-F~nid~~---Dry~ 694 (1165)
-||.|||..+... .-.+.+.| |+++|||.++ +|++|+. |-|++++ + -+||.|=. ..|...+ -.|+
T Consensus 141 gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~-~P~~L~~-~~~~~~~--~--~~iQ~pV~~~~~~~~~~l~~~~~ 214 (703)
T PRK15489 141 CKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVL-HPLELKY-FNYLLPR--K--DLVQLPVLSLERKWYEWVAGTYM 214 (703)
T ss_pred CHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCC-ChhHHHH-HHhhcCC--c--ceeeeeeccCCCccccHHHHHHH
Confidence 5999999877542 11234555 9999999997 8999975 5677752 3 36998721 1111111 2377
Q ss_pred chhHHHHHhhccccccCCCcee-ccccchhhhhhhcCCCCCCcccccCccccchhhhcccCcccccccccccccccCCCC
Q 001071 695 NHNTVFFDVAMRALDGLQGPMY-VGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDEIALPINGDH 773 (1165)
Q Consensus 695 n~~~vFfdi~~~glDG~qgp~y-vGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (1165)
.+....|+..|+++..++|++. .|||++|||+||..
T Consensus 215 ~Efa~~~~~~l~~r~~l~~~ipl~Gv~~~frr~aL~~------------------------------------------- 251 (703)
T PRK15489 215 DEFAEWHQKDLVVRESLTGTVPSAGVGTCFSRRALLA------------------------------------------- 251 (703)
T ss_pred HHHHHHhhhHHHHHHHcCCceeccCcceeeeHHHHHH-------------------------------------------
Confidence 8888999999999999999998 58999999999852
Q ss_pred CCChhhHhhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHHhHhcccccccccc
Q 001071 774 NDDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVISCFYEDKTE 853 (1165)
Q Consensus 774 ~~~~~e~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~ 853 (1165)
+.+.||
T Consensus 252 ---------------------------l~~~gg----------------------------------------------- 257 (703)
T PRK15489 252 ---------------------------LMKERG----------------------------------------------- 257 (703)
T ss_pred ---------------------------HHHhcC-----------------------------------------------
Confidence 111111
Q ss_pred cccccccccCcccchHHHHHHHHhCCcEEEEeec---------------------CCccccccCCCCHHHHHHHhHhhhc
Q 001071 854 WGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVT---------------------KRDAFRGTAPINLTDRLHQVLRWAT 912 (1165)
Q Consensus 854 WG~evGw~~gSVTEDi~TGlrLh~rGWrSvY~~p---------------------~r~af~GlAPeTL~~~l~QR~RWA~ 912 (1165)
| .+|..+|+|||+++|+||+.+|||+.|+.- ...+.+...|.|+.+.++||.||-.
T Consensus 258 ~---~~~n~~sLTED~Dlg~RL~~~G~r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~tre~fP~~~~a~~rQk~RW~~ 334 (703)
T PRK15489 258 N---QPFNTSSLTEDYDFSFRLAELGMQEIFVRFPVQFRVRRTSWFGPRRERTREMLLCVREYFPDTFRTAYRQKARWVL 334 (703)
T ss_pred C---CCCCCCCchHhHHHHHHHHHCCCceEEEEEeccccccccccccccccccccCceeehhhCcHHHHHHHHHHHHHHh
Confidence 0 168889999999999999999999999321 1356678899999999999999999
Q ss_pred chh-HHHh
Q 001071 913 GSV-EIFF 919 (1165)
Q Consensus 913 G~i-QIl~ 919 (1165)
|-. |-+.
T Consensus 335 Gi~~q~~~ 342 (703)
T PRK15489 335 GIAFQGWE 342 (703)
T ss_pred HHHHhhHH
Confidence 987 7654
No 28
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.74 E-value=4.1e-16 Score=178.63 Aligned_cols=154 Identities=18% Similarity=0.200 Sum_probs=108.9
Q ss_pred cCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCCCCCcccch-----
Q 001071 622 HNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPNDRYANH----- 696 (1165)
Q Consensus 622 Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid~~Dry~n~----- 696 (1165)
.+.|++|+|.+++. +.+++|+.+|+|..+ .|++|++.+..|.| ++++.|+.+.+.. +... +.++
T Consensus 111 ~~~K~~~l~~~~~~----a~ge~i~~~DaD~~~-~p~~L~~lv~~~~~---~~v~~V~~~~~~~--~~~~-~~~~l~~~~ 179 (373)
T TIGR03472 111 PNRKVSNLINMLPH----ARHDILVIADSDISV-GPDYLRQVVAPLAD---PDVGLVTCLYRGR--PVPG-FWSRLGAMG 179 (373)
T ss_pred CChHHHHHHHHHHh----ccCCEEEEECCCCCc-ChhHHHHHHHHhcC---CCcceEeccccCC--CCCC-HHHHHHHHH
Confidence 45799999887764 589999999999998 79999999999987 8999999864422 2111 2111
Q ss_pred -hHHHHHhhccccccCCC-ceeccccchhhhhhhcCCCCCCcccccCccccchhhhcccCcccccccccccccccCCCCC
Q 001071 697 -NTVFFDVAMRALDGLQG-PMYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDEIALPINGDHN 774 (1165)
Q Consensus 697 -~~vFfdi~~~glDG~qg-p~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1165)
+..|+...+.. +-++. .+..|++.+|||++|..
T Consensus 180 ~~~~~~~~~~~~-~~~~~~~~~~G~~~a~RR~~l~~-------------------------------------------- 214 (373)
T TIGR03472 180 INHNFLPSVMVA-RALGRARFCFGATMALRRATLEA-------------------------------------------- 214 (373)
T ss_pred hhhhhhHHHHHH-HhccCCccccChhhheeHHHHHH--------------------------------------------
Confidence 11121111111 11122 23568888899999863
Q ss_pred CChhhHhhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHHhHhccccccccccc
Q 001071 775 DDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVISCFYEDKTEW 854 (1165)
Q Consensus 775 ~~~~e~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~W 854 (1165)
+|
T Consensus 215 -----------------------------iG------------------------------------------------- 216 (373)
T TIGR03472 215 -----------------------------IG------------------------------------------------- 216 (373)
T ss_pred -----------------------------cC-------------------------------------------------
Confidence 11
Q ss_pred cccccccc--CcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHhhhcchh
Q 001071 855 GKRVGWIY--GSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSV 915 (1165)
Q Consensus 855 G~evGw~~--gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G~i 915 (1165)
||.. .+++||++++.+++.+||++.|.+. .......|+|++++++||.||++...
T Consensus 217 ----Gf~~~~~~~~ED~~l~~~i~~~G~~v~~~~~--~v~~~~~~~s~~~~~~q~~RW~r~~~ 273 (373)
T TIGR03472 217 ----GLAALAHHLADDYWLGELVRALGLRVVLAPV--VVDTDVHETSFATLLAHELRWSRTIR 273 (373)
T ss_pred ----ChHHhcccchHHHHHHHHHHHcCCeEEecch--hhhcCCCccCHHHHHHHHHHHHhhhh
Confidence 2331 4678999999999999999999853 45567888999999999999986554
No 29
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.73 E-value=1.7e-17 Score=178.61 Aligned_cols=165 Identities=18% Similarity=0.076 Sum_probs=108.5
Q ss_pred CCCCEEEeecCCCcCCchHHHHHHHHHhh-hcCCCceEEEecCeeecCCCCCCc--ccc-hhHHHHHhhccccccCCCc-
Q 001071 640 SNGPFILNLDCDHYIYNSLALREGMCFML-DRGGDRICYVQFPQRFEGIDPNDR--YAN-HNTVFFDVAMRALDGLQGP- 714 (1165)
Q Consensus 640 sngpfIlnlDcD~y~nns~~Lr~amcff~-D~~g~~vafVQfPQ~F~nid~~Dr--y~n-~~~vFfdi~~~glDG~qgp- 714 (1165)
++++||+++|+|.++ ++++|++.+-.|. | ++++-||..++..|...+-. +.+ +...++-........++..
T Consensus 72 a~~e~i~~~DaD~~~-~~~~l~~l~~~~~~~---p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~ 147 (244)
T cd04190 72 DDPEFILLVDADTKF-DPDSIVQLYKAMDKD---PEIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGFVT 147 (244)
T ss_pred CCCCEEEEECCCCcC-CHhHHHHHHHHHHhC---CCEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCceE
Confidence 589999999999998 7999999999885 5 89999999988776532211 100 1111111111222333333
Q ss_pred eeccccchhhhhhhcCCCCCCcccccCccccchhhhcccCcccccccccccccccCCCCCCChhhHhhhccCccccCchh
Q 001071 715 MYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDEIALPINGDHNDDDADIESLLLPKRFGNSTS 794 (1165)
Q Consensus 715 ~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~fg~S~~ 794 (1165)
+..|++.+|||+||...... . .+++
T Consensus 148 ~~~G~~~~~R~~~l~~~~~~--------~-----~~~~------------------------------------------ 172 (244)
T cd04190 148 CLPGCFSMYRIEALKGDNGG--------K-----GPLL------------------------------------------ 172 (244)
T ss_pred ECCCceEEEEehhhcCCccc--------c-----ccch------------------------------------------
Confidence 34588999999999752110 0 0000
Q ss_pred hhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHHhHhcccccccccccccccccccCcccchHHHHHH
Q 001071 795 LAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYR 874 (1165)
Q Consensus 795 f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGw~~gSVTEDi~TGlr 874 (1165)
+. +|..+|-. ...+....+++||.+++++
T Consensus 173 --------~~------------------------------------------~~~~~~~~-~~~~~~~~~~~ED~~l~~~ 201 (244)
T cd04190 173 --------DY------------------------------------------AYLTNTVD-SLHKKNNLDLGEDRILCTL 201 (244)
T ss_pred --------hh------------------------------------------ccccCccc-chHHHHHHhHhcccceeHH
Confidence 00 00000000 0012345679999999999
Q ss_pred HHhCCcEEEE--eecCCccccccCCCCHHHHHHHhHhhhcchhH
Q 001071 875 MHNRGWRSVY--CVTKRDAFRGTAPINLTDRLHQVLRWATGSVE 916 (1165)
Q Consensus 875 Lh~rGWrSvY--~~p~r~af~GlAPeTL~~~l~QR~RWA~G~iQ 916 (1165)
|..+||++.| ++ .+.++.++|+|+.++++||.||++|++.
T Consensus 202 l~~~G~~~~~~~~~--~a~~~~~~p~s~~~~~~QR~RW~~g~~~ 243 (244)
T cd04190 202 LLKAGPKRKYLYVP--GAVAETDVPETFVELLSQRRRWINSTIA 243 (244)
T ss_pred HhccCCccEEEEec--ccEEEEECCCCHHHHHHHhHhhhccccc
Confidence 9999999999 64 4667899999999999999999999873
No 30
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.69 E-value=4.7e-16 Score=161.20 Aligned_cols=157 Identities=17% Similarity=0.215 Sum_probs=112.9
Q ss_pred CCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCCCC-CcccchhHHHH
Q 001071 623 NKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPN-DRYANHNTVFF 701 (1165)
Q Consensus 623 h~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid~~-Dry~n~~~vFf 701 (1165)
..|+.|+|..+.. ++++||+++|+|.++ .|++|.+.+..|.+ +..+.|+.++.+...+.. ..+..-...+.
T Consensus 68 ~g~~~a~n~g~~~----~~~d~i~~~D~D~~~-~~~~l~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 139 (229)
T cd04192 68 SGKKNALTTAIKA----AKGDWIVTTDADCVV-PSNWLLTFVAFIQK---EQIGLVAGPVIYFKGKSLLAKFQRLDWLSL 139 (229)
T ss_pred chhHHHHHHHHHH----hcCCEEEEECCCccc-CHHHHHHHHHHhhc---CCCcEEeeeeeecCCccHHHHHHHHHHHHH
Confidence 3688999988764 579999999999997 69999999998876 678889998887622211 11111111112
Q ss_pred HhhccccccCCCce-eccccchhhhhhhcCCCCCCcccccCccccchhhhcccCcccccccccccccccCCCCCCChhhH
Q 001071 702 DVAMRALDGLQGPM-YVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDEIALPINGDHNDDDADI 780 (1165)
Q Consensus 702 di~~~glDG~qgp~-yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 780 (1165)
.....+.-+++.+. ..|++.+|||+++..
T Consensus 140 ~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~-------------------------------------------------- 169 (229)
T cd04192 140 LGLIAGSFGLGKPFMCNGANMAYRKEAFFE-------------------------------------------------- 169 (229)
T ss_pred HHHHhhHHHhcCccccccceEEEEHHHHHH--------------------------------------------------
Confidence 22222333444443 357777888888742
Q ss_pred hhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHHhHhccccccccccccccccc
Q 001071 781 ESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVISCFYEDKTEWGKRVGW 860 (1165)
Q Consensus 781 ~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGw 860 (1165)
+| ||
T Consensus 170 -----------------------~g-----------------------------------------------------gf 173 (229)
T cd04192 170 -----------------------VG-----------------------------------------------------GF 173 (229)
T ss_pred -----------------------hc-----------------------------------------------------CC
Confidence 11 34
Q ss_pred c--cCcccchHHHHHHHHhCCc-EEEEeecCCccccccCCCCHHHHHHHhHhhhcc
Q 001071 861 I--YGSVTEDVVTGYRMHNRGW-RSVYCVTKRDAFRGTAPINLTDRLHQVLRWATG 913 (1165)
Q Consensus 861 ~--~gSVTEDi~TGlrLh~rGW-rSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G 913 (1165)
. ....+||.+..++++.+|| ++.|+..+....+...|.++.++++||+||++|
T Consensus 174 ~~~~~~~~eD~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~Rw~~g 229 (229)
T cd04192 174 EGNDHIASGDDELLLAKVASKYPKVAYLKNPEALVTTQPVTSWKELLNQRKRWASK 229 (229)
T ss_pred ccccccccCCHHHHHHHHHhCCCCEEEeeCcchheecCCchhHHHHHHHHHHhhcC
Confidence 3 2467899999999999999 999986555667899999999999999999988
No 31
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.66 E-value=1.3e-15 Score=157.74 Aligned_cols=121 Identities=19% Similarity=0.223 Sum_probs=100.7
Q ss_pred CCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCCCCCcccchhHHHHH
Q 001071 623 NKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPNDRYANHNTVFFD 702 (1165)
Q Consensus 623 h~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid~~Dry~n~~~vFfd 702 (1165)
..|++|||++++. .+++||+++|+|..+ .|++|.+.+..|.+ ++++.|+..
T Consensus 72 ~~~~~~~n~g~~~----a~~d~i~~~D~D~~~-~~~~l~~l~~~~~~---~~~~~v~~~--------------------- 122 (196)
T cd02520 72 NPKVNNLIKGYEE----ARYDILVISDSDISV-PPDYLRRMVAPLMD---PGVGLVTCL--------------------- 122 (196)
T ss_pred CHhHHHHHHHHHh----CCCCEEEEECCCceE-ChhHHHHHHHHhhC---CCCCeEEee---------------------
Confidence 3689999998874 579999999999987 79999999999877 678888764
Q ss_pred hhccccccCCCceeccccchhhhhhhcCCCCCCcccccCccccchhhhcccCcccccccccccccccCCCCCCChhhHhh
Q 001071 703 VAMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDEIALPINGDHNDDDADIES 782 (1165)
Q Consensus 703 i~~~glDG~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 782 (1165)
...|+++++||+++..
T Consensus 123 ------------~~~g~~~~~r~~~~~~---------------------------------------------------- 138 (196)
T cd02520 123 ------------CAFGKSMALRREVLDA---------------------------------------------------- 138 (196)
T ss_pred ------------cccCceeeeEHHHHHh----------------------------------------------------
Confidence 5678999999999852
Q ss_pred hccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHHhHhccccccccccccccccccc
Q 001071 783 LLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVISCFYEDKTEWGKRVGWIY 862 (1165)
Q Consensus 783 ~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGw~~ 862 (1165)
+| ||..
T Consensus 139 ---------------------~g-----------------------------------------------------gf~~ 144 (196)
T cd02520 139 ---------------------IG-----------------------------------------------------GFEA 144 (196)
T ss_pred ---------------------cc-----------------------------------------------------ChHH
Confidence 11 2221
Q ss_pred --CcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHhhhc
Q 001071 863 --GSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWAT 912 (1165)
Q Consensus 863 --gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~ 912 (1165)
..+.||++.++++..+||++.|++. +..+...|.++.++++||.||++
T Consensus 145 ~~~~~~eD~~l~~rl~~~G~~i~~~~~--~~~~~~~~~~~~~~~~q~~rw~~ 194 (196)
T cd02520 145 FADYLAEDYFLGKLIWRLGYRVVLSPY--VVMQPLGSTSLASFWRRQLRWSR 194 (196)
T ss_pred HhHHHHHHHHHHHHHHHcCCeEEEcch--heeccCCcccHHHHHHHHHHHhc
Confidence 2467999999999999999999864 56678999999999999999986
No 32
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.65 E-value=2.4e-15 Score=154.56 Aligned_cols=137 Identities=26% Similarity=0.396 Sum_probs=110.0
Q ss_pred EEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCCCCCcccchhHHHHHhh----ccccccCCCce-ecc
Q 001071 644 FILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPNDRYANHNTVFFDVA----MRALDGLQGPM-YVG 718 (1165)
Q Consensus 644 fIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid~~Dry~n~~~vFfdi~----~~glDG~qgp~-yvG 718 (1165)
+|+++|+|..+ .+++|++.+.+|.| ++++.||+|+.+++ ..+...+.+..+|... ....+..+.+. ..|
T Consensus 1 ~v~~~DaDt~~-~~d~l~~~~~~~~~---~~~~~vq~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 74 (193)
T PF13632_consen 1 YVLFLDADTRL-PPDFLERLVAALED---PKVDAVQGPIIFRN--RGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSG 74 (193)
T ss_pred CEEEEcCCCCC-ChHHHHHHHHHHhC---CCceEEEccEEecC--CCChhheeehhhhhhhhhhhHHHHHhcCCCccccC
Confidence 68999999998 69999999999886 79999999999973 3455666666666422 12223444433 479
Q ss_pred ccchhhhhhhcCCCCCCcccccCccccchhhhcccCcccccccccccccccCCCCCCChhhHhhhccCccccCchhhhhc
Q 001071 719 TGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDEIALPINGDHNDDDADIESLLLPKRFGNSTSLAAS 798 (1165)
Q Consensus 719 TGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~fg~S~~f~~S 798 (1165)
+|.++||+||..
T Consensus 75 ~~~~~r~~~l~~-------------------------------------------------------------------- 86 (193)
T PF13632_consen 75 SGMLFRREALRE-------------------------------------------------------------------- 86 (193)
T ss_pred cceeeeHHHHHH--------------------------------------------------------------------
Confidence 999999999852
Q ss_pred hhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHHhHhcccccccccccccccccc-cCcccchHHHHHHHHh
Q 001071 799 IPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVISCFYEDKTEWGKRVGWI-YGSVTEDVVTGYRMHN 877 (1165)
Q Consensus 799 ~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WG~evGw~-~gSVTEDi~TGlrLh~ 877 (1165)
+| ||. ..+++||+++++++..
T Consensus 87 -----vg-----------------------------------------------------~~~~~~~~~ED~~l~~~l~~ 108 (193)
T PF13632_consen 87 -----VG-----------------------------------------------------GFDDPFSIGEDMDLGFRLRR 108 (193)
T ss_pred -----hC-----------------------------------------------------cccccccccchHHHHHHHHH
Confidence 11 566 7899999999999999
Q ss_pred CCcEEEEeecCCccccccCCCCHHHHHHHhHhhhcch
Q 001071 878 RGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGS 914 (1165)
Q Consensus 878 rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G~ 914 (1165)
+||++.|++. ..++..+|.|+.++++||+||+.|.
T Consensus 109 ~G~~~~~~~~--~~~~~~~p~t~~~~~~Qr~RW~~g~ 143 (193)
T PF13632_consen 109 AGYRIVYVPD--AIVYTEAPPTFRAFIRQRRRWARGA 143 (193)
T ss_pred CCCEEEEecc--cceeeeCCCCHHHHHHHHHHHHhhh
Confidence 9999999974 4568999999999999999999998
No 33
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.65 E-value=3.6e-15 Score=156.44 Aligned_cols=166 Identities=19% Similarity=0.176 Sum_probs=113.3
Q ss_pred CchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCCCCCcccchhHHHHHh
Q 001071 624 KKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPNDRYANHNTVFFDV 703 (1165)
Q Consensus 624 ~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid~~Dry~n~~~vFfdi 703 (1165)
.|++|+|..++. +.++||+++|+|.++ .+++|++++..|.| ++++.|+..+.+.+.+.. .+......++..
T Consensus 64 g~~~a~n~g~~~----a~~d~v~~lD~D~~~-~~~~l~~l~~~~~~---~~v~~v~~~~~~~~~~~~-~~~~~~~~~~~~ 134 (235)
T cd06434 64 GKRRALAEGIRH----VTTDIVVLLDSDTVW-PPNALPEMLKPFED---PKVGGVGTNQRILRPRDS-KWSFLAAEYLER 134 (235)
T ss_pred ChHHHHHHHHHH----hCCCEEEEECCCcee-ChhHHHHHHHhccC---CCEeEEcCceEeecCccc-HHHHHHHHHHHH
Confidence 499999988875 489999999999998 69999999999987 899999999988876422 111111111111
Q ss_pred ----hccccccCCCc-eeccccchhhhhhhcCCCCCCcccccCccccchhhhcccCcccccccccccccccCCCCCCChh
Q 001071 704 ----AMRALDGLQGP-MYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDEIALPINGDHNDDDA 778 (1165)
Q Consensus 704 ----~~~glDG~qgp-~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (1165)
..+...-.++. ...|...++||++|..... .+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~~~-------------------------------------------~~ 171 (235)
T cd06434 135 RNEEIRAAMSYDGGVPCLSGRTAAYRTEILKDFLF-------------------------------------------LE 171 (235)
T ss_pred HHHHHHHHHhhCCCEEEccCcHHHHHHHHHhhhhh-------------------------------------------HH
Confidence 11122222222 2246667899999863100 00
Q ss_pred hHhhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHHhHhccccccccccccccc
Q 001071 779 DIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVISCFYEDKTEWGKRV 858 (1165)
Q Consensus 779 e~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~WG~ev 858 (1165)
+ |. .+. +
T Consensus 172 ~---------------~~-----~~~-----------------------------------------------------~ 178 (235)
T cd06434 172 E---------------FT-----NET-----------------------------------------------------F 178 (235)
T ss_pred H---------------hh-----hhh-----------------------------------------------------h
Confidence 0 00 000 0
Q ss_pred ccccCcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHhhhcchhH
Q 001071 859 GWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVE 916 (1165)
Q Consensus 859 Gw~~gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G~iQ 916 (1165)
|.......||.+++.+++.+||+..|++. ...+...|.++.++++||+||++|..+
T Consensus 179 ~~~~~~~~eD~~l~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~q~~Rw~~~~~~ 234 (235)
T cd06434 179 MGRRLNAGDDRFLTRYVLSHGYKTVYQYT--SEAYTETPENYKKFLKQQLRWSRSNWR 234 (235)
T ss_pred cCCCCCcCchHHHHHHHHHCCCeEEEecC--CeEEEEcchhHHHHHHHhhhhhhcccC
Confidence 11123577999999999999999999864 444677999999999999999999853
No 34
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.63 E-value=1.2e-14 Score=154.52 Aligned_cols=52 Identities=19% Similarity=0.372 Sum_probs=46.7
Q ss_pred CcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHhhhcchhH
Q 001071 863 GSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVE 916 (1165)
Q Consensus 863 gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G~iQ 916 (1165)
....||++++.++..+||++.|++. +..+...|.++.++++|+.||+.|.+|
T Consensus 199 ~~~~eD~~l~~~~~~~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~r~~~g~~~ 250 (251)
T cd06439 199 DTINDDFVLPLRIARQGYRVVYEPD--AVAYEEVAEDGSEEFRRRVRIAAGNLQ 250 (251)
T ss_pred ccchhHHHHHHHHHHcCCeEEeccc--cEEEEeCcccHHHHHHHHHHHHhcccc
Confidence 3456999999999999999999864 556899999999999999999999988
No 35
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.56 E-value=9.7e-12 Score=144.27 Aligned_cols=219 Identities=22% Similarity=0.323 Sum_probs=144.0
Q ss_pred EEEEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCC
Q 001071 609 LVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGID 688 (1165)
Q Consensus 609 LvYvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid 688 (1165)
+.|--|.+|-+ -||||+-...|-=| +...++++||||.+. ..+.+-+.+-.|.. +|+.|++|+--.--|.|
T Consensus 214 ifYRrRr~n~~----RKaGNIaDfcrRwG--~~Y~~MlVLDADSvM-tgd~lvrLv~~ME~--~P~aGlIQt~P~~~gg~ 284 (736)
T COG2943 214 IFYRRRRRNVK----RKAGNIADFCRRWG--SAYSYMLVLDADSVM-TGDCLVRLVRLMEA--NPDAGLIQTSPKASGGD 284 (736)
T ss_pred eeeehHhhhhc----ccccCHHHHHHHhC--cccceEEEeeccccc-CchHHHHHHHHHhh--CCCCceeecchhhcCcc
Confidence 45666655444 69999998887533 578999999999998 58889888888875 49999999944433332
Q ss_pred CCCcccchh----HHHHHhhccccccCCC--ceeccccchhhhhhhcCCCCCCcccccCccccchhhhcccCcccccccc
Q 001071 689 PNDRYANHN----TVFFDVAMRALDGLQG--PMYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVD 762 (1165)
Q Consensus 689 ~~Dry~n~~----~vFfdi~~~glDG~qg--p~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (1165)
..|+--+ +|+=-+.--|+.-||+ .-|=|-|++.|-+|.
T Consensus 285 --TL~AR~qQFatrvYGpl~~~GLawW~~~Es~yWGHNAIIRt~aF---------------------------------- 328 (736)
T COG2943 285 --TLYARCQQFATRVYGPLFTAGLAWWQLGESHYWGHNAIIRTKAF---------------------------------- 328 (736)
T ss_pred --hHHHHHHHHHHHHhchHHhhhhHHHhccccccccccceeechhh----------------------------------
Confidence 1121111 1111112223332322 122333444333333
Q ss_pred cccccccCCCCCCChhhHhhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHHhH
Q 001071 763 DEIALPINGDHNDDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAIS 842 (1165)
Q Consensus 763 ~~~~~~~~~~~~~~~~e~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea~~ 842 (1165)
++-+.++.+- |++|
T Consensus 329 ---------------------------------~~hcgLp~Lp-------------G~~p-------------------- 342 (736)
T COG2943 329 ---------------------------------IEHCGLPPLP-------------GRGP-------------------- 342 (736)
T ss_pred ---------------------------------HHhcCCCCCC-------------CCCC--------------------
Confidence 2222121111 2222
Q ss_pred hcccccccccccccccccccCcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHhhhcchhHHHhhhc
Q 001071 843 VISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRN 922 (1165)
Q Consensus 843 v~sC~YE~~T~WG~evGw~~gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G~iQIl~sk~ 922 (1165)
|-...++.|+.-+-.|.+.||.+. +.++....+.+.|.|+.|.++.-+|||+|++|-+
T Consensus 343 -----------------FgG~ilSHDfvEAALmRRaGW~v~-ia~dL~GSyEE~PpnLlD~l~RDRRWC~GNLqh~---- 400 (736)
T COG2943 343 -----------------FGGHILSHDFVEAALMRRAGWGVW-IAYDLDGSYEELPPNLLDELKRDRRWCHGNLQHF---- 400 (736)
T ss_pred -----------------CCccccchHHHHHHHHhhcCceEE-EeccCCCchhhCCchHHHHHhhhhHhhhcchhhc----
Confidence 223568889999999999999655 4456888999999999999999999999999944
Q ss_pred cccccccccccccchhhhhhHHHhhHHHHHHHHHHHHHH
Q 001071 923 NALLASRRMKFLQRVAYFNVGMYPFTSMFLLVYCILPAV 961 (1165)
Q Consensus 923 ~pL~~~~~Lsl~QRL~Yl~~~lypl~si~~liylllP~l 961 (1165)
+++..++|.+..|+.++.+++.|+.+...++++++..+
T Consensus 401 -rl~~~~GlHwvsR~h~~tGVmsYlsaPlWfl~ll~g~a 438 (736)
T COG2943 401 -RLFLVKGLHWVSRAHFLTGVMSYLSAPLWFLFLLLGTA 438 (736)
T ss_pred -eeeccCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 46778999999999999998888776444444444333
No 36
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.46 E-value=2.1e-12 Score=135.70 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=47.8
Q ss_pred ccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHhhhcchhHHHhh
Q 001071 865 VTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFS 920 (1165)
Q Consensus 865 VTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G~iQIl~s 920 (1165)
..||.+.+++++.+|+++.|++. +...-..+.++..+++|+.||+.|..|.+..
T Consensus 180 ~~eD~~l~~r~~~~G~~~~~~~~--~~~~~~~~~s~~~~~~~~~r~~~~~~~~~~~ 233 (249)
T cd02525 180 RNEDAELNYRLRKAGYKIWLSPD--IRVYYYPRSTLKKLARQYFRYGKWRARTLRK 233 (249)
T ss_pred ccchhHHHHHHHHcCcEEEEcCC--eEEEEcCCCCHHHHHHHHHHHhhhhHHHHHh
Confidence 46999999999999999999864 4445678999999999999999999999873
No 37
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.45 E-value=2.1e-11 Score=140.67 Aligned_cols=46 Identities=30% Similarity=0.405 Sum_probs=40.5
Q ss_pred CCCCcccEEEeCCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEcCCCCch
Q 001071 386 SDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGAL 436 (1165)
Q Consensus 386 ~~LP~VDVFV~TaDP~kEPp~vt~nTVLSilA~DYP~~Kls~YvsDDG~s~ 436 (1165)
...|.|.|+|+++ +|. ..+..++-|+++.|||. ++.++|.|||..+
T Consensus 37 ~~~p~VSVIIpa~---Ne~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD 82 (384)
T TIGR03469 37 EAWPAVVAVVPAR---NEA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTD 82 (384)
T ss_pred CCCCCEEEEEecC---CcH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCC
Confidence 5689999999999 787 55789999999999995 4889999999876
No 38
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.08 E-value=7.5e-10 Score=113.54 Aligned_cols=101 Identities=22% Similarity=0.124 Sum_probs=70.1
Q ss_pred CchhhhHHHHhhcc-ccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCCCCCc---ccchhHH
Q 001071 624 KKAGAMNALVRTSA-IMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPNDR---YANHNTV 699 (1165)
Q Consensus 624 ~KAGAlNallRvSa-v~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid~~Dr---y~n~~~v 699 (1165)
.|++|+|..++... .-.++++|+++|+|..+ .|++|++.+..|.+ +. ..||......+.+.+-. +.-....
T Consensus 63 gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~~-~p~~l~~l~~~~~~--~~--~~v~g~~~~~~~~~~~~~~~~~~~~~~ 137 (183)
T cd06438 63 GKGYALDFGFRHLLNLADDPDAVVVFDADNLV-DPNALEELNARFAA--GA--RVVQAYYNSKNPDDSWITRLYAFAFLV 137 (183)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCC-ChhHHHHHHHHHhh--CC--CeeEEEEeeeCCccCHHHHHHHHHHHH
Confidence 59999998887531 12479999999999998 69999999998875 23 46887766665433211 1222333
Q ss_pred HHHhhccccccCCCce-eccccchhhhhhhc
Q 001071 700 FFDVAMRALDGLQGPM-YVGTGCIFRRTALY 729 (1165)
Q Consensus 700 Ffdi~~~glDG~qgp~-yvGTGc~fRR~ALy 729 (1165)
++.+...+..-+.+.+ +.|+|.+|||++|.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~ 168 (183)
T cd06438 138 FNRLRPLGRSNLGLSCQLGGTGMCFPWAVLR 168 (183)
T ss_pred HHHHHHHHHHHcCCCeeecCchhhhHHHHHH
Confidence 4444444666666654 48999999999985
No 39
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.07 E-value=1.1e-09 Score=113.80 Aligned_cols=103 Identities=19% Similarity=0.091 Sum_probs=77.1
Q ss_pred CchhhhHHHHhhccc-------cCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCCCCC--c-c
Q 001071 624 KKAGAMNALVRTSAI-------MSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPND--R-Y 693 (1165)
Q Consensus 624 ~KAGAlNallRvSav-------~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid~~D--r-y 693 (1165)
-|++|+|+.++.+.- -..+++|+++|+|..+ +|++|++++.+|.| ++++.||.+.++.|.+.+- + +
T Consensus 65 Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~-~~~~l~~~~~~~~~---~~v~~v~~~~~~~~~~~~~~~~~~ 140 (191)
T cd06436 65 GKGDALNAAYDQIRQILIEEGADPERVIIAVIDADGRL-DPNALEAVAPYFSD---PRVAGTQSRVRMYNRHKNLLTILQ 140 (191)
T ss_pred CHHHHHHHHHHHHhhhccccccCCCccEEEEECCCCCc-CHhHHHHHHHhhcC---CceEEEeeeEEEecCCCCHHHHHH
Confidence 499999998875310 0125899999999997 79999998888877 8999999999998865431 1 2
Q ss_pred cchhHHHHHhhccccccCCCceeccccchhhhhhhcC
Q 001071 694 ANHNTVFFDVAMRALDGLQGPMYVGTGCIFRRTALYG 730 (1165)
Q Consensus 694 ~n~~~vFfdi~~~glDG~qgp~yvGTGc~fRR~ALyg 730 (1165)
..+...++.+++.++..++...+.|+|++|||+||..
T Consensus 141 ~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~r~~~l~~ 177 (191)
T cd06436 141 DLEFFIIIAATQSLRALTGTVGLGGNGQFMRLSALDG 177 (191)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEECCeeEEEeHHHHHH
Confidence 2334444556677776666555799999999999973
No 40
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.05 E-value=1e-09 Score=114.45 Aligned_cols=97 Identities=21% Similarity=0.158 Sum_probs=70.3
Q ss_pred cCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCCCCCcccchhHHHH
Q 001071 622 HNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPNDRYANHNTVFF 701 (1165)
Q Consensus 622 Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid~~Dry~n~~~vFf 701 (1165)
-|-|..||-.+++. ...+++|+++|+|+.+ +|++|++.+..|.| +++++|..+.++.+.+. ..+.-...|+
T Consensus 15 ~N~Kv~nL~~~~~~---~a~~d~~~~~DsDi~v-~p~~L~~lv~~l~~---p~vglVt~~~~~~~~~~--~~~~l~~~~~ 85 (175)
T PF13506_consen 15 CNPKVNNLAQGLEA---GAKYDYLVISDSDIRV-PPDYLRELVAPLAD---PGVGLVTGLPRGVPARG--FWSRLEAAFF 85 (175)
T ss_pred CChHHHHHHHHHHh---hCCCCEEEEECCCeeE-CHHHHHHHHHHHhC---CCCcEEEecccccCCcC--HHHHHHHHHH
Confidence 46899999888874 1589999999999998 69999999999999 89999988777554442 1111111222
Q ss_pred ---HhhccccccCCCceeccccchhhhhhhc
Q 001071 702 ---DVAMRALDGLQGPMYVGTGCIFRRTALY 729 (1165)
Q Consensus 702 ---di~~~glDG~qgp~yvGTGc~fRR~ALy 729 (1165)
-..+.. .-..++..|....+||++|.
T Consensus 86 ~~~~~~~~a--~~~~~~~~G~~m~~rr~~L~ 114 (175)
T PF13506_consen 86 NFLPGVLQA--LGGAPFAWGGSMAFRREALE 114 (175)
T ss_pred hHHHHHHHH--hcCCCceecceeeeEHHHHH
Confidence 122222 22567778999999999996
No 41
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=98.95 E-value=2e-08 Score=103.17 Aligned_cols=68 Identities=19% Similarity=0.112 Sum_probs=53.0
Q ss_pred EEEEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCC
Q 001071 609 LVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGID 688 (1165)
Q Consensus 609 LvYvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid 688 (1165)
+.|+.++++.| +++|+|..++. +.|+||+.+|+|.++ .|++|.+.+.+|.. .+++++|.......+.+
T Consensus 57 i~~i~~~~n~G-----~~~a~N~g~~~----a~gd~i~~lD~Dd~~-~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~ 124 (201)
T cd04195 57 LKVVPLEKNRG-----LGKALNEGLKH----CTYDWVARMDTDDIS-LPDRFEKQLDFIEK--NPEIDIVGGGVLEFDSD 124 (201)
T ss_pred eEEEEcCcccc-----HHHHHHHHHHh----cCCCEEEEeCCcccc-CcHHHHHHHHHHHh--CCCeEEEcccEEEECCC
Confidence 44666655444 79999998874 589999999999997 69999999999975 36888888776654443
No 42
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=98.94 E-value=3.7e-10 Score=94.62 Aligned_cols=42 Identities=57% Similarity=1.375 Sum_probs=25.1
Q ss_pred ecCCCccccc-----ccccCCccchhhhhhhhcCCCCCCCCCCCccc
Q 001071 154 KGCDEKVMQN-----KCDCGFKICRECYLECAGNGGGRCPGCKEPYK 195 (1165)
Q Consensus 154 ~gcd~~~~~d-----~CeC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk 195 (1165)
.+|+.++..+ ||||+|+|||+||.+.++++++.||+||++|+
T Consensus 2 p~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 2 PLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 3577776422 99999999999999999989999999999996
No 43
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=98.92 E-value=2.1e-08 Score=102.87 Aligned_cols=53 Identities=19% Similarity=0.140 Sum_probs=43.3
Q ss_pred CchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHh-hhcCCCceEEEecCeee
Q 001071 624 KKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFM-LDRGGDRICYVQFPQRF 684 (1165)
Q Consensus 624 ~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff-~D~~g~~vafVQfPQ~F 684 (1165)
.++.|+|..++. +.++||+.+|+|.++ .+++|.+.+-.| .+ +++++|+.....
T Consensus 70 g~~~a~n~g~~~----a~~d~i~~ld~D~~~-~~~~l~~~~~~~~~~---~~~~~v~~~~~~ 123 (202)
T cd04184 70 GISAATNSALEL----ATGEFVALLDHDDEL-APHALYEVVKALNEH---PDADLIYSDEDK 123 (202)
T ss_pred CHHHHHHHHHHh----hcCCEEEEECCCCcC-ChHHHHHHHHHHHhC---CCCCEEEccHHh
Confidence 478999988875 478999999999997 799999999988 44 677777665543
No 44
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.63 E-value=5.3e-07 Score=91.16 Aligned_cols=56 Identities=18% Similarity=0.035 Sum_probs=42.9
Q ss_pred chhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCC
Q 001071 625 KAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGI 687 (1165)
Q Consensus 625 KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~ni 687 (1165)
+++|+|..++. .+++||+.+|+|..+ .++.+.+.+..+... +++.+|.....+.+.
T Consensus 63 ~~~a~n~~~~~----a~~~~v~~ld~D~~~-~~~~~~~~~~~~~~~--~~~~~v~g~~~~~~~ 118 (202)
T cd06433 63 IYDAMNKGIAL----ATGDIIGFLNSDDTL-LPGALLAVVAAFAEH--PEVDVVYGDVLLVDE 118 (202)
T ss_pred HHHHHHHHHHH----cCCCEEEEeCCCccc-CchHHHHHHHHHHhC--CCccEEEeeeEEEcC
Confidence 79999988874 579999999999998 589999999555432 566777666555433
No 45
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.56 E-value=1.4e-06 Score=85.65 Aligned_cols=65 Identities=20% Similarity=0.160 Sum_probs=53.4
Q ss_pred CchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCCCCCcccchhHHHHHh
Q 001071 624 KKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPNDRYANHNTVFFDV 703 (1165)
Q Consensus 624 ~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid~~Dry~n~~~vFfdi 703 (1165)
-+++|+|..++. .++++|+.+|+|.++ .++++.+.+-.+.+ .+++++|+..
T Consensus 61 g~~~a~n~~~~~----~~~~~i~~~D~D~~~-~~~~l~~~~~~~~~--~~~~~~~~~~---------------------- 111 (166)
T cd04186 61 GFGAGNNQGIRE----AKGDYVLLLNPDTVV-EPGALLELLDAAEQ--DPDVGIVGPK---------------------- 111 (166)
T ss_pred ChHHHhhHHHhh----CCCCEEEEECCCcEE-CccHHHHHHHHHHh--CCCceEEEcc----------------------
Confidence 389999998875 389999999999997 68999999987775 3677777655
Q ss_pred hccccccCCCceeccccchhhhhhhc
Q 001071 704 AMRALDGLQGPMYVGTGCIFRRTALY 729 (1165)
Q Consensus 704 ~~~glDG~qgp~yvGTGc~fRR~ALy 729 (1165)
+.|.+.++||+++.
T Consensus 112 ------------~~~~~~~~~~~~~~ 125 (166)
T cd04186 112 ------------VSGAFLLVRREVFE 125 (166)
T ss_pred ------------CceeeEeeeHHHHH
Confidence 77888888888875
No 46
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=98.54 E-value=3.3e-06 Score=93.87 Aligned_cols=41 Identities=20% Similarity=0.078 Sum_probs=36.9
Q ss_pred EEEeCCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEcCCCCch
Q 001071 393 VFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGAL 436 (1165)
Q Consensus 393 VFV~TaDP~kEPp~vt~nTVLSilA~DYP~~Kls~YvsDDG~s~ 436 (1165)
|+|+|+ +|++..+..||-|+++..||....-|.|.|||...
T Consensus 2 IIIp~~---N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d 42 (299)
T cd02510 2 VIIIFH---NEALSTLLRTVHSVINRTPPELLKEIILVDDFSDK 42 (299)
T ss_pred EEEEEe---cCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCc
Confidence 789999 89889999999999999998666689999999876
No 47
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=98.54 E-value=2.1e-05 Score=94.91 Aligned_cols=53 Identities=19% Similarity=0.300 Sum_probs=44.2
Q ss_pred cccchHHHHHHHHhC--CcEEEEeecCCccccccCCCCHHHHHHHhHhhhcchhHHH
Q 001071 864 SVTEDVVTGYRMHNR--GWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIF 918 (1165)
Q Consensus 864 SVTEDi~TGlrLh~r--GWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G~iQIl 918 (1165)
.+.||=.++-.|..+ |||..|+.. +.++..+|+|+..+++||+||..|++--+
T Consensus 324 ~lGEDR~LttLlLk~~~~~k~~y~~~--A~a~T~aP~t~~vflsQRRRWinSTi~Nl 378 (527)
T PF03142_consen 324 DLGEDRWLTTLLLKQFPGYKTEYVPS--AVAYTDAPETFSVFLSQRRRWINSTIHNL 378 (527)
T ss_pred hcchhHHHHHHHHhhCCCceEEEccc--ccccccCCccHHHHHHHhhhccchhHhhH
Confidence 577998777666665 899999974 66679999999999999999999998543
No 48
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.51 E-value=3.7e-06 Score=87.66 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=34.0
Q ss_pred ccEEEeCCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEcCCCCch
Q 001071 391 IDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGAL 436 (1165)
Q Consensus 391 VDVFV~TaDP~kEPp~vt~nTVLSilA~DYP~~Kls~YvsDDG~s~ 436 (1165)
|.|+|+++ +|+. .+..++.|+++..| .++.|+|.|||...
T Consensus 1 vsvii~~~---n~~~-~l~~~l~sl~~q~~--~~~evivvdd~s~d 40 (221)
T cd02522 1 LSIIIPTL---NEAE-NLPRLLASLRRLNP--LPLEIIVVDGGSTD 40 (221)
T ss_pred CEEEEEcc---CcHH-HHHHHHHHHHhccC--CCcEEEEEeCCCCc
Confidence 57899999 7876 67999999999998 46789999998765
No 49
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.47 E-value=3.1e-06 Score=87.21 Aligned_cols=56 Identities=16% Similarity=0.164 Sum_probs=45.3
Q ss_pred CchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecC
Q 001071 624 KKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEG 686 (1165)
Q Consensus 624 ~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~n 686 (1165)
-+++|+|..++. ++|+||+++|.|.+. .|+.|.+.+..+.. .++.+++.....+.+
T Consensus 66 G~~~~~n~g~~~----~~g~~v~~ld~Dd~~-~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~ 121 (214)
T cd04196 66 GVARNFESLLQA----ADGDYVFFCDQDDIW-LPDKLERLLKAFLK--DDKPLLVYSDLELVD 121 (214)
T ss_pred cHHHHHHHHHHh----CCCCEEEEECCCccc-ChhHHHHHHHHHhc--CCCceEEecCcEEEC
Confidence 389999988764 589999999999997 69999999998654 267788888766543
No 50
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=98.44 E-value=3.3e-07 Score=89.11 Aligned_cols=110 Identities=17% Similarity=0.168 Sum_probs=76.7
Q ss_pred EEEEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCC
Q 001071 609 LVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGID 688 (1165)
Q Consensus 609 LvYvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid 688 (1165)
+.|+.++++- .+++|+|.+++. ..++||+.+|+|.++ .+++|.+.+.++.+. +..+.+...+....+..
T Consensus 55 i~~i~~~~n~-----g~~~~~n~~~~~----a~~~~i~~ld~D~~~-~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~ 123 (169)
T PF00535_consen 55 IRYIRNPENL-----GFSAARNRGIKH----AKGEYILFLDDDDII-SPDWLEELVEALEKN-PPDVVIGSVIYIDDDNR 123 (169)
T ss_dssp EEEEEHCCCS-----HHHHHHHHHHHH------SSEEEEEETTEEE--TTHHHHHHHHHHHC-TTEEEEEEEEEEECTTE
T ss_pred cccccccccc-----cccccccccccc----cceeEEEEeCCCceE-cHHHHHHHHHHHHhC-CCcEEEEEEEEecCCcc
Confidence 5688887642 499999998875 578899999999998 577999999999982 34455555444444433
Q ss_pred CCCccc--chhHHHHHhhccccccCCCceeccccchhhhhhhc
Q 001071 689 PNDRYA--NHNTVFFDVAMRALDGLQGPMYVGTGCIFRRTALY 729 (1165)
Q Consensus 689 ~~Dry~--n~~~vFfdi~~~glDG~qgp~yvGTGc~fRR~ALy 729 (1165)
...... .....++............+.++|.++++||+++.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~ 166 (169)
T PF00535_consen 124 YPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFE 166 (169)
T ss_dssp TEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHH
T ss_pred ccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHH
Confidence 322211 12234444556666778889999999999999986
No 51
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=98.42 E-value=5.6e-06 Score=83.71 Aligned_cols=39 Identities=15% Similarity=0.263 Sum_probs=35.1
Q ss_pred CchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHh
Q 001071 624 KKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFM 667 (1165)
Q Consensus 624 ~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff 667 (1165)
.|++|+|..++. ++|+||+.+|+|-.+ .+++|.+.+-++
T Consensus 66 ~~~~~~n~g~~~----a~g~~i~~lD~D~~~-~~~~l~~~~~~~ 104 (182)
T cd06420 66 RKAKIRNKAIAA----AKGDYLIFIDGDCIP-HPDFIADHIELA 104 (182)
T ss_pred hHHHHHHHHHHH----hcCCEEEEEcCCccc-CHHHHHHHHHHh
Confidence 589999998874 589999999999997 699999999887
No 52
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=98.35 E-value=5.3e-06 Score=80.42 Aligned_cols=109 Identities=29% Similarity=0.352 Sum_probs=66.0
Q ss_pred EEEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCCC
Q 001071 610 VYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDP 689 (1165)
Q Consensus 610 vYvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid~ 689 (1165)
+|+..+++.| |+.|+|.+++. .++++|+.+|+|.++ .+++|.+.+..+.. .++++.|+..+...+...
T Consensus 56 ~~~~~~~~~g-----~~~~~n~~~~~----~~~~~i~~~D~D~~~-~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~~ 123 (180)
T cd06423 56 LVVRDKENGG-----KAGALNAGLRH----AKGDIVVVLDADTIL-EPDALKRLVVPFFA--DPKVGAVQGRVRVRNGSE 123 (180)
T ss_pred EEEEecccCC-----chHHHHHHHHh----cCCCEEEEECCCCCc-ChHHHHHHHHHhcc--CCCeeeEeeeEEEecCcC
Confidence 4555555444 89999999885 389999999999998 69999999665553 267766665444433321
Q ss_pred C--Ccc-cchhHHHHHhhccccccCCC-ceeccccchhhhhhhcC
Q 001071 690 N--DRY-ANHNTVFFDVAMRALDGLQG-PMYVGTGCIFRRTALYG 730 (1165)
Q Consensus 690 ~--Dry-~n~~~vFfdi~~~glDG~qg-p~yvGTGc~fRR~ALyg 730 (1165)
+ ..+ .......+.....+...... ..+.|++.++||++|..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 168 (180)
T cd06423 124 NLLTRLQAIEYLSIFRLGRRAQSALGGVLVLSGAFGAFRREALRE 168 (180)
T ss_pred cceeccchheecceeeeeeehhheecceeecCchHHHHHHHHHHH
Confidence 1 110 01111111111222111222 45679999999999974
No 53
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.35 E-value=9.4e-06 Score=83.93 Aligned_cols=55 Identities=20% Similarity=0.199 Sum_probs=41.7
Q ss_pred chhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeec
Q 001071 625 KAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFE 685 (1165)
Q Consensus 625 KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~ 685 (1165)
.+.++|..+... ....+++++.+|+|.++ ++++|++.+-.+.+ ++++.| +|.++.
T Consensus 64 ~~~~~n~~~~~a-~~~~~d~v~~ld~D~~~-~~~~l~~l~~~~~~---~~~~~~-~~~~~~ 118 (202)
T cd04185 64 GAGGFYEGVRRA-YELGYDWIWLMDDDAIP-DPDALEKLLAYADK---DNPQFL-APLVLD 118 (202)
T ss_pred hhhHHHHHHHHH-hccCCCEEEEeCCCCCc-ChHHHHHHHHHHhc---CCceEe-cceeEc
Confidence 677888766643 23579999999999997 69999999998875 667666 454543
No 54
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=98.34 E-value=1.5e-05 Score=85.91 Aligned_cols=49 Identities=14% Similarity=0.025 Sum_probs=40.0
Q ss_pred chhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecC
Q 001071 625 KAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFP 681 (1165)
Q Consensus 625 KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfP 681 (1165)
|++|+|+.++. +.|+||+.+|+|... +|++|.+.+-.+.+ ++..+|...
T Consensus 81 ~~~a~n~g~~~----a~g~~i~~lD~D~~~-~~~~l~~l~~~~~~---~~~~~v~g~ 129 (243)
T PLN02726 81 LGTAYIHGLKH----ASGDFVVIMDADLSH-HPKYLPSFIKKQRE---TGADIVTGT 129 (243)
T ss_pred HHHHHHHHHHH----cCCCEEEEEcCCCCC-CHHHHHHHHHHHHh---cCCcEEEEc
Confidence 88999998874 579999999999996 79999999988876 445555443
No 55
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=98.32 E-value=1.2e-05 Score=84.06 Aligned_cols=58 Identities=17% Similarity=0.112 Sum_probs=44.5
Q ss_pred EEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecC
Q 001071 611 YVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFP 681 (1165)
Q Consensus 611 YvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfP 681 (1165)
++..+++.| |++|+|..++. +.+++|+.+|+|..+ +|++|...+..+.+ ++...|..+
T Consensus 57 ~~~~~~n~G-----~~~a~n~g~~~----a~gd~i~~lD~D~~~-~~~~l~~l~~~~~~---~~~~~v~g~ 114 (224)
T cd06442 57 LIVRPGKRG-----LGSAYIEGFKA----ARGDVIVVMDADLSH-PPEYIPELLEAQLE---GGADLVIGS 114 (224)
T ss_pred EEecCCCCC-----hHHHHHHHHHH----cCCCEEEEEECCCCC-CHHHHHHHHHHHhc---CCCCEEEEe
Confidence 444455444 89999998875 468999999999987 79999999999876 444555554
No 56
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=98.10 E-value=9e-05 Score=78.08 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=34.2
Q ss_pred CchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhh
Q 001071 624 KKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLD 669 (1165)
Q Consensus 624 ~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D 669 (1165)
-.+.|+|..++. ++|+||+.+|+|-+. +|+.|.+.+..+.+
T Consensus 71 G~~~a~N~g~~~----a~gd~i~~lD~D~~~-~~~~l~~~~~~~~~ 111 (219)
T cd06913 71 GVGYAKNQAIAQ----SSGRYLCFLDSDDVM-MPQRIRLQYEAALQ 111 (219)
T ss_pred cHHHHHHHHHHh----cCCCEEEEECCCccC-ChhHHHHHHHHHHh
Confidence 477888988874 689999999999986 68899888877765
No 57
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=98.02 E-value=2e-05 Score=83.19 Aligned_cols=66 Identities=15% Similarity=0.144 Sum_probs=45.9
Q ss_pred EEEEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHH---HHhhhcCCCceEEEecCeee
Q 001071 609 LVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGM---CFMLDRGGDRICYVQFPQRF 684 (1165)
Q Consensus 609 LvYvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~am---cff~D~~g~~vafVQfPQ~F 684 (1165)
+.++..+++.| +|+|+|..++.+.- .+++||+.+|+|.++ +|++|.+.+ ..+.. .++++.+ .|+..
T Consensus 49 i~~i~~~~n~G-----~~~a~N~g~~~a~~-~~~d~v~~lD~D~~~-~~~~l~~l~~~~~~~~~--~~~~~~~-~~~~~ 117 (237)
T cd02526 49 IELIHLGENLG-----IAKALNIGIKAALE-NGADYVLLFDQDSVP-PPDMVEKLLAYKILSDK--NSNIGAV-GPRII 117 (237)
T ss_pred EEEEECCCcee-----hHHhhhHHHHHHHh-CCCCEEEEECCCCCc-CHhHHHHHHHHHHhhcc--CCCeEEE-eeeEE
Confidence 45666665444 99999998875321 267999999999998 699999985 33322 3566655 45544
No 58
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=98.00 E-value=6.7e-05 Score=75.94 Aligned_cols=108 Identities=17% Similarity=0.143 Sum_probs=66.4
Q ss_pred EEEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCCC
Q 001071 610 VYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDP 689 (1165)
Q Consensus 610 vYvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid~ 689 (1165)
.++..+++.| |++|+|..++. +.+++|+.+|+|-.+ .|++|.+.+-.+.. ++..+|+.+..+.+...
T Consensus 57 ~~~~~~~n~G-----~~~a~n~g~~~----a~gd~i~~lD~D~~~-~~~~l~~l~~~~~~---~~~~~v~g~~~~~~~~~ 123 (185)
T cd04179 57 RVIRLSRNFG-----KGAAVRAGFKA----ARGDIVVTMDADLQH-PPEDIPKLLEKLLE---GGADVVIGSRFVRGGGA 123 (185)
T ss_pred EEEEccCCCC-----ccHHHHHHHHH----hcCCEEEEEeCCCCC-CHHHHHHHHHHHhc---cCCcEEEEEeecCCCcc
Confidence 4555555555 99999988875 577999999999987 79999999998776 55667777766554321
Q ss_pred CC-cccch-hHHHHHhhccccccCCCceeccccchhhhhhhcCC
Q 001071 690 ND-RYANH-NTVFFDVAMRALDGLQGPMYVGTGCIFRRTALYGF 731 (1165)
Q Consensus 690 ~D-ry~n~-~~vFfdi~~~glDG~qgp~yvGTGc~fRR~ALyg~ 731 (1165)
.. .+... ...++ .....+.+..-....|...++||+++..+
T Consensus 124 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~i 166 (185)
T cd04179 124 GMPLLRRLGSRLFN-FLIRLLLGVRISDTQSGFRLFRREVLEAL 166 (185)
T ss_pred cchHHHHHHHHHHH-HHHHHHcCCCCcCCCCceeeeHHHHHHHH
Confidence 11 11111 11111 11222223333333444557999999753
No 59
>PRK10073 putative glycosyl transferase; Provisional
Probab=97.89 E-value=0.00017 Score=82.50 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=37.5
Q ss_pred CCcccEEEeCCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEcCCCCch
Q 001071 388 LPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGAL 436 (1165)
Q Consensus 388 LP~VDVFV~TaDP~kEPp~vt~nTVLSilA~DYP~~Kls~YvsDDG~s~ 436 (1165)
.|.|-|+||+| +++ ..+..++-|+++..|+ .+-+.|.|||...
T Consensus 5 ~p~vSVIIP~y---N~~-~~L~~~l~Sl~~Qt~~--~~EIIiVdDgStD 47 (328)
T PRK10073 5 TPKLSIIIPLY---NAG-KDFRAFMESLIAQTWT--ALEIIIVNDGSTD 47 (328)
T ss_pred CCeEEEEEecc---CCH-HHHHHHHHHHHhCCCC--CeEEEEEeCCCCc
Confidence 57899999999 665 5789999999999997 5789999999876
No 60
>PRK10018 putative glycosyl transferase; Provisional
Probab=97.87 E-value=0.00063 Score=76.47 Aligned_cols=59 Identities=14% Similarity=0.201 Sum_probs=44.1
Q ss_pred cEEEEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEE
Q 001071 608 MLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYV 678 (1165)
Q Consensus 608 ~LvYvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafV 678 (1165)
++.|+..+++.| ++.|+|..+.. .+|+||+.+|+|.+. .|+.|.+.+-++.. ....+++
T Consensus 61 ri~~i~~~~n~G-----~~~a~N~gi~~----a~g~~I~~lDaDD~~-~p~~l~~~~~~~~~--~~~~~~~ 119 (279)
T PRK10018 61 RITYIHNDINSG-----ACAVRNQAIML----AQGEYITGIDDDDEW-TPNRLSVFLAHKQQ--LVTHAFL 119 (279)
T ss_pred CEEEEECCCCCC-----HHHHHHHHHHH----cCCCEEEEECCCCCC-CccHHHHHHHHHHh--CCCccEE
Confidence 356776555444 88999998874 689999999999997 59999998887764 2344444
No 61
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=97.84 E-value=0.00016 Score=75.69 Aligned_cols=51 Identities=20% Similarity=0.075 Sum_probs=40.5
Q ss_pred chhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCee
Q 001071 625 KAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQR 683 (1165)
Q Consensus 625 KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~ 683 (1165)
|++|+|..++. +.|++|+.+|+|-.. +++++.+.+..+++ +....|.....
T Consensus 70 ~~~a~~~g~~~----a~gd~i~~ld~D~~~-~~~~l~~l~~~~~~---~~~~~v~g~r~ 120 (211)
T cd04188 70 KGGAVRAGMLA----ARGDYILFADADLAT-PFEELEKLEEALKT---SGYDIAIGSRA 120 (211)
T ss_pred cHHHHHHHHHH----hcCCEEEEEeCCCCC-CHHHHHHHHHHHhc---cCCcEEEEEee
Confidence 89999999985 478999999999996 79999999999776 33444444433
No 62
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=97.70 E-value=0.00035 Score=87.75 Aligned_cols=50 Identities=24% Similarity=0.334 Sum_probs=45.3
Q ss_pred cccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHhhhcchh
Q 001071 864 SVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSV 915 (1165)
Q Consensus 864 SVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G~i 915 (1165)
+..||=.+..++..+||+..|+.. +.....+|+++..++.||+||..|.+
T Consensus 549 ~~geDR~L~~~llskgy~l~Y~a~--s~a~t~~Pe~~~efl~QrrRW~~s~f 598 (862)
T KOG2571|consen 549 SLGEDRWLCTLLLSKGYRLKYVAA--SDAETEAPESFLEFLNQRRRWLNSIF 598 (862)
T ss_pred ccchhHHHHHHHHhccceeeeecc--ccccccCcHhHHHHHHHhhhhcccch
Confidence 388999999999999999999964 66679999999999999999999933
No 63
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=97.62 E-value=0.00059 Score=69.54 Aligned_cols=104 Identities=16% Similarity=0.228 Sum_probs=63.8
Q ss_pred EEEEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCC
Q 001071 609 LVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGID 688 (1165)
Q Consensus 609 LvYvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid 688 (1165)
+.|+..++..| |++|+|+.++. +.+++|+.+|+|... ++++|.+.+..+.. +.++.+.+.... + +
T Consensus 57 i~~i~~~~n~G-----~~~a~n~g~~~----a~~d~i~~~D~D~~~-~~~~l~~l~~~~~~--~~~~v~g~~~~~--~-~ 121 (181)
T cd04187 57 VKVIRLSRNFG-----QQAALLAGLDH----ARGDAVITMDADLQD-PPELIPEMLAKWEE--GYDVVYGVRKNR--K-E 121 (181)
T ss_pred EEEEEecCCCC-----cHHHHHHHHHh----cCCCEEEEEeCCCCC-CHHHHHHHHHHHhC--CCcEEEEEecCC--c-c
Confidence 34555444333 89999998875 478999999999997 79999999988432 345544432221 1 1
Q ss_pred C-CCcccchhHHHHHhhccccccCCCceeccccchhhhhhhcC
Q 001071 689 P-NDRYANHNTVFFDVAMRALDGLQGPMYVGTGCIFRRTALYG 730 (1165)
Q Consensus 689 ~-~Dry~n~~~vFfdi~~~glDG~qgp~yvGTGc~fRR~ALyg 730 (1165)
. ..++.+ ..++. ....+.+..-+...|+.+++||+++..
T Consensus 122 ~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~ 161 (181)
T cd04187 122 SWLKRLTS--KLFYR-LINKLSGVDIPDNGGDFRLMDRKVVDA 161 (181)
T ss_pred hHHHHHHH--HHHHH-HHHHHcCCCCCCCCCCEEEEcHHHHHH
Confidence 1 011111 11211 222234445566678888999999975
No 64
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=97.61 E-value=0.00031 Score=77.32 Aligned_cols=71 Identities=20% Similarity=0.205 Sum_probs=52.1
Q ss_pred cCcEEEEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeec
Q 001071 606 LPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFE 685 (1165)
Q Consensus 606 lP~LvYvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~ 685 (1165)
.|.+.|+.-+++.| .|||+|..++.. .-.+++||+.+|.|-++ .+++|.+.+.++... +.+++.|. |..++
T Consensus 44 ~~~i~~i~~~~N~G-----~a~a~N~Gi~~a-~~~~~d~i~~lD~D~~~-~~~~l~~l~~~~~~~-~~~~~~~~-~~~~~ 114 (281)
T TIGR01556 44 GQKIALIHLGDNQG-----IAGAQNQGLDAS-FRRGVQGVLLLDQDSRP-GNAFLAAQWKLLSAE-NGQACALG-PRFFD 114 (281)
T ss_pred CCCeEEEECCCCcc-----hHHHHHHHHHHH-HHCCCCEEEEECCCCCC-CHHHHHHHHHHHHhc-CCceEEEC-CeEEc
Confidence 35677887666555 799999887652 12378999999999998 589999999888651 23788886 44443
No 65
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=97.40 E-value=0.0025 Score=60.24 Aligned_cols=51 Identities=27% Similarity=0.232 Sum_probs=40.3
Q ss_pred CchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecC
Q 001071 624 KKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFP 681 (1165)
Q Consensus 624 ~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfP 681 (1165)
.|++++|.++..+ ++++++++|+|.++ .++++...+-.+.. .++..+|+.+
T Consensus 64 g~~~~~~~~~~~~----~~d~v~~~d~D~~~-~~~~~~~~~~~~~~--~~~~~~v~~~ 114 (156)
T cd00761 64 GLAAARNAGLKAA----RGEYILFLDADDLL-LPDWLERLVAELLA--DPEADAVGGP 114 (156)
T ss_pred ChHHHHHHHHHHh----cCCEEEEECCCCcc-CccHHHHHHHHHhc--CCCceEEecc
Confidence 5999999888753 79999999999997 68888887554443 2677788776
No 66
>PRK10063 putative glycosyl transferase; Provisional
Probab=97.37 E-value=0.0058 Score=67.30 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=33.6
Q ss_pred CcccEEEeCCCCCCCChHHHHHHHHHHHcC-CCCCCCcEEEEcCCCCch
Q 001071 389 PGIDVFVSTADPEKEPPLVTANTILSILAV-DYPVEKLACYLSDDGGAL 436 (1165)
Q Consensus 389 P~VDVFV~TaDP~kEPp~vt~nTVLSilA~-DYP~~Kls~YvsDDG~s~ 436 (1165)
|.|-|+|+|+ +|.. ....|+-|++++ ..+...+-+.|.|||...
T Consensus 1 ~~vSVIi~~y---N~~~-~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD 45 (248)
T PRK10063 1 MLLSVITVAF---RNLE-GIVKTHASLRHLAQDPGISFEWIVVDGGSND 45 (248)
T ss_pred CeEEEEEEeC---CCHH-HHHHHHHHHHHHHhCCCCCEEEEEEECcCcc
Confidence 4588999999 7744 578899998764 233346789999999876
No 67
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=97.33 E-value=0.0052 Score=70.75 Aligned_cols=52 Identities=23% Similarity=0.176 Sum_probs=39.3
Q ss_pred CchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEec
Q 001071 624 KKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQF 680 (1165)
Q Consensus 624 ~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQf 680 (1165)
-|++|+|+.++. +.|++|+++|+|... +++.+.+.+-.+.+-..+.+..|..
T Consensus 149 G~~~A~~~Gi~~----a~gd~I~~~DaD~~~-~~~~l~~l~~~l~~~~~~~~dvV~G 200 (333)
T PTZ00260 149 GKGGAVRIGMLA----SRGKYILMVDADGAT-DIDDFDKLEDIMLKIEQNGLGIVFG 200 (333)
T ss_pred ChHHHHHHHHHH----ccCCEEEEEeCCCCC-CHHHHHHHHHHHHHhhccCCceEEe
Confidence 399999998875 479999999999986 7899888888776411134444544
No 68
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.23 E-value=0.0001 Score=82.96 Aligned_cols=48 Identities=33% Similarity=0.832 Sum_probs=42.3
Q ss_pred CcceeecCCCccccc---ccccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 149 LICGMKGCDEKVMQN---KCDCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 149 ~~C~i~gcd~~~~~d---~CeC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
..|..|=...++... ||.|+|.|||.||...+.+-+|.||.|+..|+.
T Consensus 15 d~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred ccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 449998777777654 999999999999999999999999999999954
No 69
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=96.83 E-value=0.029 Score=63.35 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=48.4
Q ss_pred EEEEEecCCCCCCcCCchhhhHHHHhhccccCCCC-EEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecC
Q 001071 609 LVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGP-FILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEG 686 (1165)
Q Consensus 609 LvYvSREKRPg~~Hh~KAGAlNallRvSav~sngp-fIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~n 686 (1165)
+.|+.-.++-|+ ||+.|..++.. +.++. |++.|+-|.++ ++++|.+.+-.+... +.++.|+.-.+.++
T Consensus 58 v~~i~~~~NlG~-----agg~n~g~~~a--~~~~~~~~l~LN~D~~~-~~~~l~~ll~~~~~~--~~~~~~~~~i~~~~ 126 (305)
T COG1216 58 VRLIENGENLGF-----AGGFNRGIKYA--LAKGDDYVLLLNPDTVV-EPDLLEELLKAAEED--PAAGVVGPLIRNYD 126 (305)
T ss_pred EEEEEcCCCccc-----hhhhhHHHHHH--hcCCCcEEEEEcCCeee-ChhHHHHHHHHHHhC--CCCeEeeeeEecCC
Confidence 445555555563 77888666642 24544 99999999775 799999999998863 78888887666543
No 70
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=96.82 E-value=0.012 Score=67.07 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=41.4
Q ss_pred CchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhh-hcCCCceEEEec
Q 001071 624 KKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFML-DRGGDRICYVQF 680 (1165)
Q Consensus 624 ~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~-D~~g~~vafVQf 680 (1165)
-|++|+|+.++. ++|++|+.+|+|....+|++|.+.+..|. + +++.+|..
T Consensus 102 Gkg~A~~~g~~~----a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~---~~~~~V~g 152 (306)
T PRK13915 102 GKGEALWRSLAA----TTGDIVVFVDADLINFDPMFVPGLLGPLLTD---PGVHLVKA 152 (306)
T ss_pred CHHHHHHHHHHh----cCCCEEEEEeCccccCCHHHHHHHHHHHHhC---CCceEEEE
Confidence 499999998864 58999999999997447999999999887 5 66777764
No 71
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=96.43 E-value=0.0099 Score=66.48 Aligned_cols=62 Identities=13% Similarity=0.194 Sum_probs=45.8
Q ss_pred CchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCCCC
Q 001071 624 KKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPN 690 (1165)
Q Consensus 624 ~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid~~ 690 (1165)
-+|.|.|.++.. +++++|+.+|+|.++ .|+++.+++-+.+.-.....+++-+|-.|.+.+..
T Consensus 75 ~~a~arN~g~~~----A~~d~l~flD~D~i~-~~~~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~ 136 (281)
T PF10111_consen 75 SRAKARNIGAKY----ARGDYLIFLDADCIP-SPDFIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGS 136 (281)
T ss_pred CHHHHHHHHHHH----cCCCEEEEEcCCeee-CHHHHHHHHHHHHHHhcCCCceEEEeeeeccchhh
Confidence 589999998874 599999999999998 69999999994332111344566667676655443
No 72
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=93.88 E-value=0.74 Score=53.09 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=37.5
Q ss_pred CchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceE
Q 001071 624 KKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRIC 676 (1165)
Q Consensus 624 ~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~va 676 (1165)
-|++|+|+.++. +.|++|+.+|||... +|+.+.+.+..+.+ +.++.
T Consensus 77 G~~~A~~~G~~~----A~gd~vv~~DaD~q~-~p~~i~~l~~~~~~--~~DvV 122 (325)
T PRK10714 77 GQHSAIMAGFSH----VTGDLIITLDADLQN-PPEEIPRLVAKADE--GYDVV 122 (325)
T ss_pred CHHHHHHHHHHh----CCCCEEEEECCCCCC-CHHHHHHHHHHHHh--hCCEE
Confidence 388999998874 589999999999996 79999999988754 34543
No 73
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=92.50 E-value=0.14 Score=59.68 Aligned_cols=48 Identities=25% Similarity=0.630 Sum_probs=40.1
Q ss_pred CcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHhhhc
Q 001071 863 GSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWAT 912 (1165)
Q Consensus 863 gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~ 912 (1165)
+.+.||+..+=.+..+||++.+..- ++---.+-.++..+..|-.||.+
T Consensus 267 ~yLaedyFaaksllSRG~ksaist~--palQnSas~~mssf~~Ri~rwvk 314 (431)
T KOG2547|consen 267 GYLAEDYFAAKSLLSRGWKSAISTH--PALQNSASVTMSSFLDRIIRWVK 314 (431)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccc--chhhhhhhhHHHHHHHHHHHhhh
Confidence 4789999999999999999999863 44446677888889999999975
No 74
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.77 E-value=0.29 Score=56.25 Aligned_cols=50 Identities=22% Similarity=0.493 Sum_probs=41.3
Q ss_pred CCCcceeecCCCccccc---cc-ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 147 SGLICGMKGCDEKVMQN---KC-DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 147 ~g~~C~i~gcd~~~~~d---~C-eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
..+.|.+|--+.-+..+ -- +|+-.+|+.|.+.-...|.+.||.|+++.+.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccch
Confidence 45789997776665544 22 8999999999999888898999999999987
No 75
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=87.01 E-value=3.1 Score=48.71 Aligned_cols=90 Identities=11% Similarity=0.223 Sum_probs=55.8
Q ss_pred cCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHH---HHHHHHHhhhcCCCceEEEecCeeecCCCCCCcccch-h
Q 001071 622 HNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLA---LREGMCFMLDRGGDRICYVQFPQRFEGIDPNDRYANH-N 697 (1165)
Q Consensus 622 Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~---Lr~amcff~D~~g~~vafVQfPQ~F~nid~~Dry~n~-~ 697 (1165)
+|+|+ |+|.++.. .+++++++||-|..+ .|+| +.+++..+.++ ++|..|-. +|-.-....... .
T Consensus 83 ~hyk~-aln~vF~~----~~~~~vIILEDDl~~-sPdFf~yf~~~l~~y~~D--~~v~~ISa----~NdnG~~~~~~~~~ 150 (334)
T cd02514 83 RHYKW-ALTQTFNL----FGYSFVIILEDDLDI-APDFFSYFQATLPLLEED--PSLWCISA----WNDNGKEHFVDDTP 150 (334)
T ss_pred HHHHH-HHHHHHHh----cCCCEEEEECCCCcc-CHhHHHHHHHHHHHHhcC--CCEEEEEe----eccCCcccccCCCc
Confidence 45666 67776643 379999999999998 6995 58999988853 78888854 210000000000 1
Q ss_pred HHHHHhhccccccCCCceeccccchhhhhhhcCCCC
Q 001071 698 TVFFDVAMRALDGLQGPMYVGTGCIFRRTALYGFSP 733 (1165)
Q Consensus 698 ~vFfdi~~~glDG~qgp~yvGTGc~fRR~ALyg~~p 733 (1165)
..+| ..-++.|.|-+.+|++-..++|
T Consensus 151 ~~ly----------rs~ff~glGWml~r~~W~e~~~ 176 (334)
T cd02514 151 SLLY----------RTDFFPGLGWMLTRKLWKELEP 176 (334)
T ss_pred ceEE----------EecCCCchHHHHHHHHHHHhCC
Confidence 1111 2245577888888888876644
No 76
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=82.46 E-value=1 Score=39.13 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=35.1
Q ss_pred cceeecCCCccccccc--ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 150 ICGMKGCDEKVMQNKC--DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 150 ~C~i~gcd~~~~~d~C--eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
+|.||++- +.||. .|++-.||.|.+.-.++ ++.||-|+++...
T Consensus 3 ~Cpi~~~~---~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~ 47 (63)
T smart00504 3 LCPISLEV---MKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTH 47 (63)
T ss_pred CCcCCCCc---CCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCCh
Confidence 58886664 56766 89999999999988777 6899999998854
No 77
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=80.47 E-value=3.1 Score=39.80 Aligned_cols=44 Identities=23% Similarity=0.318 Sum_probs=38.7
Q ss_pred CCcccEEEeCCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchh
Q 001071 388 LPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGALL 437 (1165)
Q Consensus 388 LP~VDVFV~TaDP~kEPp~vt~nTVLSilA~DYP~~Kls~YvsDDG~s~l 437 (1165)
.|.|-|+|||+ +|+ .....+|-|++...|+. .-+.|.|||...=
T Consensus 2 ~~~~siiip~~---n~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~d~ 45 (291)
T COG0463 2 MPKVSVVIPTY---NEE-EYLPEALESLLNQTYKD--FEIIVVDDGSTDG 45 (291)
T ss_pred CccEEEEEecc---chh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCCCC
Confidence 46799999999 676 89999999999999997 4499999999983
No 78
>PHA02862 5L protein; Provisional
Probab=80.43 E-value=1.3 Score=45.91 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=37.0
Q ss_pred CCcceeecCCCcccccccccC---Cccchhhhhhh-hcCCCCCCCCCCCcccc
Q 001071 148 GLICGMKGCDEKVMQNKCDCG---FKICRECYLEC-AGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 148 g~~C~i~gcd~~~~~d~CeC~---f~iCr~Cy~~~-~k~g~~~Cp~Ck~~yk~ 196 (1165)
+.+|.||-++++....||.|. =-+=+.|.+.= ...+...|++||++|.-
T Consensus 2 ~diCWIC~~~~~e~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCDERNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCCCCcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 578999988887666699883 33457887554 44777999999999954
No 79
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=75.06 E-value=1.9 Score=38.01 Aligned_cols=43 Identities=28% Similarity=0.686 Sum_probs=30.8
Q ss_pred CCCcceeecCCCccccc--cc-ccCCccchhhhhhhhcCCCCCCCC--CCCcc
Q 001071 147 SGLICGMKGCDEKVMQN--KC-DCGFKICRECYLECAGNGGGRCPG--CKEPY 194 (1165)
Q Consensus 147 ~g~~C~i~gcd~~~~~d--~C-eC~f~iCr~Cy~~~~k~g~~~Cp~--Ck~~y 194 (1165)
.+.+|.+||...+...| -| +|+-|-=|+||+++ +.|-- |++++
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~-----g~C~~~~c~~~~ 51 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKA-----GGCINYSCGTGF 51 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhhC-----CceEeccCCCCc
Confidence 46789997777765666 78 88888888888776 44444 66655
No 80
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=70.59 E-value=3.3 Score=32.41 Aligned_cols=43 Identities=26% Similarity=0.564 Sum_probs=30.8
Q ss_pred cceeecCCCccccccc-ccCCccchhhhhhhhcCCCCCCCCCCCc
Q 001071 150 ICGMKGCDEKVMQNKC-DCGFKICRECYLECAGNGGGRCPGCKEP 193 (1165)
Q Consensus 150 ~C~i~gcd~~~~~d~C-eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~ 193 (1165)
.|.||.+...... .. .|+-..|..|.+.-.+.++..||.|+..
T Consensus 1 ~C~iC~~~~~~~~-~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPV-VLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCce-EecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 3778766651111 12 4888999999987777778899999975
No 81
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=68.50 E-value=3.6 Score=47.78 Aligned_cols=48 Identities=38% Similarity=0.935 Sum_probs=39.1
Q ss_pred CCcceeecCCCccc-cc--ccccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 148 GLICGMKGCDEKVM-QN--KCDCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 148 g~~C~i~gcd~~~~-~d--~CeC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
...|.||+.+...+ .+ ||-|+|.+|-+|-... -++++.||.|+++|.+
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~-~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTI-SDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcc-cccCCCCCccCCcccc
Confidence 47899988877433 33 9999999999998544 5677999999999987
No 82
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=65.42 E-value=3.3 Score=42.55 Aligned_cols=50 Identities=26% Similarity=0.510 Sum_probs=36.1
Q ss_pred CCCcceeecCCCcccc--ccc-ccCCccchhhhhhhhc--CCCCCCCCCCCcccc
Q 001071 147 SGLICGMKGCDEKVMQ--NKC-DCGFKICRECYLECAG--NGGGRCPGCKEPYKD 196 (1165)
Q Consensus 147 ~g~~C~i~gcd~~~~~--d~C-eC~f~iCr~Cy~~~~k--~g~~~Cp~Ck~~yk~ 196 (1165)
+---|.||.+..---+ .|= =|||.||-.||--=.| .-.-+||-|||-||.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 4456888654432111 155 5899999999976555 667899999999997
No 83
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=63.91 E-value=3.3 Score=48.11 Aligned_cols=29 Identities=41% Similarity=1.165 Sum_probs=25.4
Q ss_pred CCccchhhhhhhhcCCC--CCCCCCCCcccc
Q 001071 168 GFKICRECYLECAGNGG--GRCPGCKEPYKD 196 (1165)
Q Consensus 168 ~f~iCr~Cy~~~~k~g~--~~Cp~Ck~~yk~ 196 (1165)
+|.|||.|+..-+-+-+ +.||-|+++|+.
T Consensus 1 ~yqIc~~cwh~i~~~~~~~grcpncr~ky~e 31 (327)
T KOG2068|consen 1 GYQICDSCWHHIATSAEKKGRCPNCRTKYKE 31 (327)
T ss_pred CceeeHHHHhccccccccccCCccccCccch
Confidence 58899999987776666 999999999987
No 84
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=63.47 E-value=4.4 Score=35.91 Aligned_cols=43 Identities=30% Similarity=0.629 Sum_probs=32.8
Q ss_pred CcceeecCCCccccccc-ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 149 LICGMKGCDEKVMQNKC-DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 149 ~~C~i~gcd~~~~~d~C-eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
|.|-.||-...+. +- .|+-.||+.|+.-++-+| ||=|.+|++.
T Consensus 8 ~~~~~~~~~~~~~--~~~pCgH~I~~~~f~~~rYng---CPfC~~~~~~ 51 (55)
T PF14447_consen 8 QPCVFCGFVGTKG--TVLPCGHLICDNCFPGERYNG---CPFCGTPFEF 51 (55)
T ss_pred eeEEEcccccccc--ccccccceeeccccChhhccC---CCCCCCcccC
Confidence 5666655544433 34 688999999998887777 9999999987
No 85
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=56.30 E-value=11 Score=39.87 Aligned_cols=52 Identities=23% Similarity=0.441 Sum_probs=39.2
Q ss_pred CCCCCcceeecCCCcccccccccCC---ccchhhhhhh-hcCCCCCCCCCCCcccc
Q 001071 145 VKSGLICGMKGCDEKVMQNKCDCGF---KICRECYLEC-AGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 145 ~~~g~~C~i~gcd~~~~~d~CeC~f---~iCr~Cy~~~-~k~g~~~Cp~Ck~~yk~ 196 (1165)
...+..|.||-++.+....||.|.= -+=+.|.+.= ...+...|+.|+++|.-
T Consensus 5 s~~~~~CRIC~~~~~~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 5 SLMDKCCWICKDEYDVVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCCeeEecCCCCCCccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 4567899999888764444998854 4467898755 44677999999999965
No 86
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=56.22 E-value=2.4e+02 Score=37.20 Aligned_cols=74 Identities=23% Similarity=0.323 Sum_probs=47.9
Q ss_pred CcccchHHHHHHHHhCCcEEEEeecCCccccccCCC-CHHHHHHHhHhhhcchhHHHhhhccccccccccccccchhhh
Q 001071 863 GSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPI-NLTDRLHQVLRWATGSVEIFFSRNNALLASRRMKFLQRVAYF 940 (1165)
Q Consensus 863 gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPe-TL~~~l~QR~RWA~G~iQIl~sk~~pL~~~~~Lsl~QRL~Yl 940 (1165)
=.+.||+..|+...+||=++.++.- ...|-.-+ .+.+-+.=-..=+.|+-|..+||.---+ +.+|.+.+-|.+.
T Consensus 408 lhLsEDIfaG~n~~lRGG~i~h~ey---~qcGKGRD~Gf~~I~~F~~KI~~G~GEQ~LSRe~yrL-g~~ld~~R~LSfy 482 (817)
T PF02364_consen 408 LHLSEDIFAGMNATLRGGRIKHCEY---IQCGKGRDVGFNSILNFETKIASGMGEQMLSREYYRL-GTRLDFFRFLSFY 482 (817)
T ss_pred ccccHHHHHHHHHHhcCCceeehhh---hhcccccccCchhhhhhHhHhcCCccchhhhHHHHHh-hccCCHHHHHHHH
Confidence 3799999999999999999999852 22243322 2222222234557888888887653222 5677777666544
No 87
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=52.42 E-value=68 Score=35.18 Aligned_cols=58 Identities=9% Similarity=0.194 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCchhh--hHHHHHHHHHHHHhHHHHHHHHhccCCCce
Q 001071 1072 ITIMMVNVIAIAVGVARTMYSPFPQWSR--LIGGVFFSLWVLSHLYPFAKGLMGRRGKVS 1129 (1165)
Q Consensus 1072 ~tLllLnLvaIv~Gi~r~i~~~~~~w~~--l~g~l~~~~Wvl~nL~Pf~kgL~gR~~r~P 1129 (1165)
..|+++.+++++-|+.-++.......|. ++...+..++++|.+|-++--+.+-+++.|
T Consensus 100 ssLl~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~ 159 (226)
T COG4858 100 SSLLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRP 159 (226)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCC
Confidence 4567788888888888776544333332 223335567888888777776666444333
No 88
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=49.96 E-value=10 Score=43.93 Aligned_cols=33 Identities=36% Similarity=1.047 Sum_probs=28.4
Q ss_pred CCCCCcceeecCCCcccc--c----cc--ccCCccchhhhh
Q 001071 145 VKSGLICGMKGCDEKVMQ--N----KC--DCGFKICRECYL 177 (1165)
Q Consensus 145 ~~~g~~C~i~gcd~~~~~--d----~C--eC~f~iCr~Cy~ 177 (1165)
.+.|-.|.-.||+.+.-. | -| -|+|-.||.|.|
T Consensus 312 q~gGVlCP~pgCG~gll~EPD~rkvtC~~gCgf~FCR~C~e 352 (446)
T KOG0006|consen 312 QMGGVLCPRPGCGAGLLPEPDQRKVTCEGGCGFAFCRECKE 352 (446)
T ss_pred ecCCEecCCCCCCcccccCCCCCcccCCCCchhHhHHHHHh
Confidence 677999999999999653 3 88 499999999998
No 89
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=47.02 E-value=43 Score=36.16 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=34.7
Q ss_pred CchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhh
Q 001071 624 KKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLD 669 (1165)
Q Consensus 624 ~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D 669 (1165)
-.+.+.|..+.. ..+++|+.+|+|..+ .++.+.+...++.+
T Consensus 58 g~~~~~n~~~~~----a~~d~vl~lDaD~~~-~~~~~~~l~~~~~~ 98 (229)
T cd02511 58 GFGAQRNFALEL----ATNDWVLSLDADERL-TPELADEILALLAT 98 (229)
T ss_pred ChHHHHHHHHHh----CCCCEEEEEeCCcCc-CHHHHHHHHHHHhC
Confidence 378899988763 478899999999997 68999999888876
No 90
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=46.46 E-value=14 Score=27.71 Aligned_cols=37 Identities=27% Similarity=0.727 Sum_probs=26.4
Q ss_pred ceeecCCCccccccc--ccCCccchhhhhhhhcCCCCCCCCC
Q 001071 151 CGMKGCDEKVMQNKC--DCGFKICRECYLECAGNGGGRCPGC 190 (1165)
Q Consensus 151 C~i~gcd~~~~~d~C--eC~f~iCr~Cy~~~~k~g~~~Cp~C 190 (1165)
|.||.... .++- .|+...|..|++.-.+.+...||.|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 56765552 2222 6888899999987777677889987
No 91
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=45.71 E-value=14 Score=33.92 Aligned_cols=44 Identities=18% Similarity=0.411 Sum_probs=32.9
Q ss_pred cceeecCCCccccccc--ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 150 ICGMKGCDEKVMQNKC--DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 150 ~C~i~gcd~~~~~d~C--eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
.|.|+ ..+|.||. .||.-.||.|.+.-.+.+...||.|+.+...
T Consensus 6 ~CpIt---~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 6 LCPIT---GELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp B-TTT---SSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred CCcCc---CcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 46663 35889987 8889999999999999988999999988754
No 92
>PRK00420 hypothetical protein; Validated
Probab=44.59 E-value=9.8 Score=38.25 Aligned_cols=27 Identities=26% Similarity=0.540 Sum_probs=20.9
Q ss_pred cc-ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 164 KC-DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 164 ~C-eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
.| .|++|.= +.++|.-.||.|++.+..
T Consensus 25 ~CP~Cg~pLf------~lk~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 25 HCPVCGLPLF------ELKDGEVVCPVHGKVYIV 52 (112)
T ss_pred CCCCCCCcce------ecCCCceECCCCCCeeee
Confidence 56 6666653 347899999999999976
No 93
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=39.95 E-value=24 Score=31.56 Aligned_cols=41 Identities=27% Similarity=0.633 Sum_probs=28.3
Q ss_pred CcceeecCCCcccc-c--cc--ccCCccchhhhhhhhcCCCCCCCCCCCcc
Q 001071 149 LICGMKGCDEKVMQ-N--KC--DCGFKICRECYLECAGNGGGRCPGCKEPY 194 (1165)
Q Consensus 149 ~~C~i~gcd~~~~~-d--~C--eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~y 194 (1165)
..|..|+-|..... + -| ||-| |.+|-+... .++||.|+-..
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTF--C~~C~e~~l---~~~CPNCgGel 51 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTF--CADCAETML---NGVCPNCGGEL 51 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcc--cHHHHHHHh---cCcCcCCCCcc
Confidence 35777555544443 3 67 8887 999987665 47999998655
No 94
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=38.69 E-value=19 Score=41.47 Aligned_cols=31 Identities=26% Similarity=0.787 Sum_probs=28.1
Q ss_pred ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 166 DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 166 eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
+|+.++|..|+.---.-|.+.||.|++.-..
T Consensus 22 ~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred cccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 9999999999977777888999999999876
No 95
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=38.36 E-value=17 Score=42.13 Aligned_cols=31 Identities=26% Similarity=0.708 Sum_probs=24.8
Q ss_pred ccCCcc--------ch--hhhhhhhcCCCCCCCCCCCcccc
Q 001071 166 DCGFKI--------CR--ECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 166 eC~f~i--------Cr--~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
.|+||| |+ .||+-+|.+..+.||+|-++-.|
T Consensus 95 ~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 95 RCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQR 135 (389)
T ss_pred ccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHHH
Confidence 566666 43 58888888888999999988876
No 96
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.08 E-value=24 Score=42.55 Aligned_cols=45 Identities=22% Similarity=0.538 Sum_probs=34.2
Q ss_pred CCcceeecCCCccccccc--ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 148 GLICGMKGCDEKVMQNKC--DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 148 g~~C~i~gcd~~~~~d~C--eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
.-.|.||.+.- .+|. .|+--.|..|....... ...||.|++++..
T Consensus 26 ~l~C~IC~d~~---~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 26 SLRCHICKDFF---DVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQE 72 (397)
T ss_pred ccCCCcCchhh---hCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCcccc
Confidence 46899976543 3444 89999999999877655 3589999999854
No 97
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.94 E-value=22 Score=38.47 Aligned_cols=45 Identities=20% Similarity=0.522 Sum_probs=36.2
Q ss_pred CCcceeecCCCccccccc--ccCCccchhhhhhhhcCCCCCCCCCCCcc
Q 001071 148 GLICGMKGCDEKVMQNKC--DCGFKICRECYLECAGNGGGRCPGCKEPY 194 (1165)
Q Consensus 148 g~~C~i~gcd~~~~~d~C--eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~y 194 (1165)
--.|.||-|++.--. |. +||---|+.|-+.++|.+ ..||-|+..-
T Consensus 131 ~~~CPiCl~~~sek~-~vsTkCGHvFC~~Cik~alk~~-~~CP~C~kkI 177 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKV-PVSTKCGHVFCSQCIKDALKNT-NKCPTCRKKI 177 (187)
T ss_pred ccCCCceecchhhcc-ccccccchhHHHHHHHHHHHhC-CCCCCccccc
Confidence 367999777764332 44 999999999999999999 7999999743
No 98
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=34.51 E-value=41 Score=36.89 Aligned_cols=47 Identities=19% Similarity=0.472 Sum_probs=34.5
Q ss_pred CCCcceeecCCCccccccc--ccCCccchhhhhhhh---------------cCCCCCCCCCCCcccc
Q 001071 147 SGLICGMKGCDEKVMQNKC--DCGFKICRECYLECA---------------GNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 147 ~g~~C~i~gcd~~~~~d~C--eC~f~iCr~Cy~~~~---------------k~g~~~Cp~Ck~~yk~ 196 (1165)
+.-.|.||.+.. .||. .|+-..|+.|...-. +.+...||-||++...
T Consensus 17 ~~~~CpICld~~---~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 17 GDFDCNICLDQV---RDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CccCCccCCCcC---CCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 456799987654 4555 899999999997422 1234689999999964
No 99
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=33.08 E-value=17 Score=32.23 Aligned_cols=16 Identities=38% Similarity=0.906 Sum_probs=14.4
Q ss_pred cCCCCCCCCCCCcccc
Q 001071 181 GNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 181 k~g~~~Cp~Ck~~yk~ 196 (1165)
+++--+||.|++||.|
T Consensus 18 ~dDiVvCp~CgapyHR 33 (54)
T PF14446_consen 18 GDDIVVCPECGAPYHR 33 (54)
T ss_pred CCCEEECCCCCCcccH
Confidence 6777899999999998
No 100
>TIGR02556 cas_TM1802 CRISPR-associated protein, TM1802 family. This minor cas protein is found in CRISPR/cas regions of at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial.
Probab=32.56 E-value=23 Score=44.40 Aligned_cols=32 Identities=25% Similarity=0.582 Sum_probs=23.4
Q ss_pred CCcceeecCCCccccc-----------cccc-------CCccchhhhhhh
Q 001071 148 GLICGMKGCDEKVMQN-----------KCDC-------GFKICRECYLEC 179 (1165)
Q Consensus 148 g~~C~i~gcd~~~~~d-----------~CeC-------~f~iCr~Cy~~~ 179 (1165)
+.+|.|||-...+..+ |.-+ +||||++|+..-
T Consensus 170 ~g~C~iCg~~~~~v~~~~~fKfyT~DK~gf~sgk~~~knfpIC~eC~~~l 219 (555)
T TIGR02556 170 SGTCHLCGERSDITYDSFVYKFYTTDKPGFSSDKGFSKNFSICRDCYKDV 219 (555)
T ss_pred ceEEeccCCCCceeccceeeeeeecCCCcccCCccccccCchhHHHHHHH
Confidence 6999999997764332 4433 599999999554
No 101
>PRK12495 hypothetical protein; Provisional
Probab=32.02 E-value=28 Score=38.78 Aligned_cols=26 Identities=35% Similarity=0.958 Sum_probs=19.2
Q ss_pred cc-ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 164 KC-DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 164 ~C-eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
-| +|+.||= ...|..+||.|.+.+.+
T Consensus 44 hC~~CG~PIp-------a~pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 44 HCDECGDPIF-------RHDGQEFCPTCQQPVTE 70 (226)
T ss_pred hcccccCccc-------CCCCeeECCCCCCcccc
Confidence 34 5555554 34888999999999976
No 102
>PF09484 Cas_TM1802: CRISPR-associated protein TM1802 (cas_TM1802); InterPro: IPR013389 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor class of Cas proteins found in at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial [].
Probab=31.65 E-value=27 Score=43.94 Aligned_cols=35 Identities=26% Similarity=0.524 Sum_probs=25.4
Q ss_pred CCCCCcceeecCCCccccc------------cc----------ccCCccchhhhhhh
Q 001071 145 VKSGLICGMKGCDEKVMQN------------KC----------DCGFKICRECYLEC 179 (1165)
Q Consensus 145 ~~~g~~C~i~gcd~~~~~d------------~C----------eC~f~iCr~Cy~~~ 179 (1165)
....++|.|||....|..+ |- -=+||||.+|+..-
T Consensus 195 ~~~~g~C~iCg~~~~V~~~~~~~~Kfyt~DK~gf~~g~~~k~~~knfpiC~~C~~~l 251 (593)
T PF09484_consen 195 SKKDGVCSICGKEKEVYGDVSKPFKFYTTDKPGFASGFDKKNAWKNFPICQDCALKL 251 (593)
T ss_pred cCCCCeEEeCCCCCeecccchhhheeeecCCcccccccccccccccChhhHHHHHHH
Confidence 5566789999999776544 22 24689999999654
No 103
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=31.62 E-value=26 Score=44.75 Aligned_cols=24 Identities=21% Similarity=0.517 Sum_probs=17.1
Q ss_pred cchhhhhhhhcCCCCCCCCCCCccc
Q 001071 171 ICRECYLECAGNGGGRCPGCKEPYK 195 (1165)
Q Consensus 171 iCr~Cy~~~~k~g~~~Cp~Ck~~yk 195 (1165)
.|..|- .+...|..-||+|+++-.
T Consensus 29 ~Cp~CG-~~~~~~~~fC~~CG~~~~ 52 (645)
T PRK14559 29 PCPQCG-TEVPVDEAHCPNCGAETG 52 (645)
T ss_pred cCCCCC-CCCCcccccccccCCccc
Confidence 355555 336778889999998874
No 104
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.98 E-value=32 Score=32.22 Aligned_cols=40 Identities=30% Similarity=0.851 Sum_probs=27.0
Q ss_pred cceeecCCCccccc-----cc--ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 150 ICGMKGCDEKVMQN-----KC--DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 150 ~C~i~gcd~~~~~d-----~C--eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
-|.- ||-++--| -| ||-| |.+|-|... .+.||.|+-..-+
T Consensus 7 nCEC--CDrDLpp~s~dA~ICtfEcTF--CadCae~~l---~g~CPnCGGelv~ 53 (84)
T COG3813 7 NCEC--CDRDLPPDSTDARICTFECTF--CADCAENRL---HGLCPNCGGELVA 53 (84)
T ss_pred CCcc--cCCCCCCCCCceeEEEEeeeh--hHhHHHHhh---cCcCCCCCchhhc
Confidence 3544 55554333 67 8887 999987654 3789999876643
No 105
>PRK12438 hypothetical protein; Provisional
Probab=30.61 E-value=5e+02 Score=35.23 Aligned_cols=45 Identities=11% Similarity=0.202 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhHHHHHHHHhccCCCceehhHHHHHHHHHHHHHhh
Q 001071 1103 GVFFSLWVLSHLYPFAKGLMGRRGKVSTIVFLWSGLISLIISLLW 1147 (1165)
Q Consensus 1103 ~l~~~~Wvl~nL~Pf~kgL~gR~~r~P~~v~~~s~ll~~~~sllw 1147 (1165)
+.++.+-+++..+-|+.+++.|+-|+|.+.++.-++.++++..+|
T Consensus 260 ~~iL~~ia~i~Av~f~~~i~~r~~rlp~i~~~llv~~~iv~g~i~ 304 (991)
T PRK12438 260 KLILVAIAVLCAVAFFAAIFLRDLRIPAMAAALLVLSAILVGGLW 304 (991)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 334444444555556667777777899887766666666666665
No 106
>PHA02929 N1R/p28-like protein; Provisional
Probab=29.85 E-value=48 Score=37.49 Aligned_cols=50 Identities=18% Similarity=0.360 Sum_probs=36.2
Q ss_pred CCCCCcceeecCCCccc---cc----ccccCCccchhhhhhhhcCCCCCCCCCCCccc
Q 001071 145 VKSGLICGMKGCDEKVM---QN----KCDCGFKICRECYLECAGNGGGRCPGCKEPYK 195 (1165)
Q Consensus 145 ~~~g~~C~i~gcd~~~~---~d----~CeC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk 195 (1165)
......|.||.+..... .. ...|+-.-|+.|...-.+ ..+.||-|+.++-
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-~~~tCPlCR~~~~ 227 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-EKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-cCCCCCCCCCEee
Confidence 34578999988864321 10 348999999999965544 5689999999874
No 107
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=29.36 E-value=32 Score=28.98 Aligned_cols=44 Identities=23% Similarity=0.542 Sum_probs=31.3
Q ss_pred CcceeecCCCccccc-cc-ccCCc-cchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 149 LICGMKGCDEKVMQN-KC-DCGFK-ICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 149 ~~C~i~gcd~~~~~d-~C-eC~f~-iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
..|.||.... .+ .- .|+=. .|..|.+.-.+ ....||-|+.+.++
T Consensus 3 ~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 3 EECPICFENP---RDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIES 49 (50)
T ss_dssp SB-TTTSSSB---SSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-SE
T ss_pred CCCccCCccC---CceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhcC
Confidence 3577865543 33 22 78888 99999988877 66999999998754
No 108
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.32 E-value=7.9 Score=45.48 Aligned_cols=48 Identities=21% Similarity=0.520 Sum_probs=36.5
Q ss_pred CCcceeecCCCcccccccccCCccchhhhhhhhcCCCCCCCCCCCccc
Q 001071 148 GLICGMKGCDEKVMQNKCDCGFKICRECYLECAGNGGGRCPGCKEPYK 195 (1165)
Q Consensus 148 g~~C~i~gcd~~~~~d~CeC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk 195 (1165)
.-+|.||-.=.+.+.+-=||.-.+|++|.--+.+.|+.-||-|++.-.
T Consensus 43 ~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 43 QVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred hhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 346777544444332223999999999999999999999999998774
No 109
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=28.68 E-value=25 Score=27.76 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=13.3
Q ss_pred hhhhhcCCCCCCCCCCCcc
Q 001071 176 YLECAGNGGGRCPGCKEPY 194 (1165)
Q Consensus 176 y~~~~k~g~~~Cp~Ck~~y 194 (1165)
|.|+.++....||.|+.+-
T Consensus 9 y~y~~~~~~~~CP~Cg~~~ 27 (33)
T cd00350 9 YIYDGEEAPWVCPVCGAPK 27 (33)
T ss_pred CEECCCcCCCcCcCCCCcH
Confidence 3445555678999998764
No 110
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=25.22 E-value=11 Score=37.57 Aligned_cols=45 Identities=22% Similarity=0.458 Sum_probs=29.9
Q ss_pred CCCCcceeecCCCccccc---cc-ccCCccchhhhhhhhcCCCCCCCCC
Q 001071 146 KSGLICGMKGCDEKVMQN---KC-DCGFKICRECYLECAGNGGGRCPGC 190 (1165)
Q Consensus 146 ~~g~~C~i~gcd~~~~~d---~C-eC~f~iCr~Cy~~~~k~g~~~Cp~C 190 (1165)
.+...|.+|+-.-+.-.+ .| +|...||+.|-.+-.++..=.|-=|
T Consensus 52 ~~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC 100 (118)
T PF02318_consen 52 YGERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVC 100 (118)
T ss_dssp HCCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHH
T ss_pred cCCcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhh
Confidence 366799998776553333 99 9999999999988444544455443
No 111
>COG4817 DNA-binding ferritin-like protein (Dps family) [General function prediction only]
Probab=24.97 E-value=61 Score=32.47 Aligned_cols=29 Identities=41% Similarity=0.686 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhcchhhhhccccccchHHHHH
Q 001071 490 RRVKREYDEFKVRINSLPESIRRRSDAYNAHEELR 524 (1165)
Q Consensus 490 ~~mKreYeefk~rI~~l~~~~~~~~~~~~~~ee~~ 524 (1165)
..+||||.+|+.|+..|++ |+|.+-+|++
T Consensus 9 l~eKre~k~~e~RakkLPk------dY~~aykeIq 37 (111)
T COG4817 9 LEEKREWKEFENRAKKLPK------DYYTAYKEIQ 37 (111)
T ss_pred chHHHHHHHHHHHHHHCcH------HHHHHHHHHH
Confidence 4679999999999999975 6777777764
No 112
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=23.31 E-value=1.9e+02 Score=31.93 Aligned_cols=47 Identities=21% Similarity=0.276 Sum_probs=37.8
Q ss_pred chhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHh-hhcCCCceEEE
Q 001071 625 KAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFM-LDRGGDRICYV 678 (1165)
Q Consensus 625 KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff-~D~~g~~vafV 678 (1165)
-|=+.|+.++- +.++|++-+.=|-.+.+.+++.+.+-.| .| +++|.|
T Consensus 42 ~~~~yN~a~~~----a~~~ylvflHqDv~i~~~~~l~~il~~~~~~---~~~G~i 89 (217)
T PF13712_consen 42 MAAAYNEAMEK----AKAKYLVFLHQDVFIINENWLEDILEIFEED---PNIGMI 89 (217)
T ss_dssp TTTHHHHHGGG------SSEEEEEETTEE-SSHHHHHHHHHHHHH----TTEEEE
T ss_pred HHHHHHHHHHh----CCCCEEEEEeCCeEEcchhHHHHHHHHHhhC---CCccEE
Confidence 56778998874 6899999999999999999999999999 67 787766
No 113
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=23.26 E-value=41 Score=26.99 Aligned_cols=24 Identities=33% Similarity=1.006 Sum_probs=20.6
Q ss_pred ccCCccchhhhhhhhcCCCCCCCCC
Q 001071 166 DCGFKICRECYLECAGNGGGRCPGC 190 (1165)
Q Consensus 166 eC~f~iCr~Cy~~~~k~g~~~Cp~C 190 (1165)
.|+--.|+.|.+.-.+. +..||.|
T Consensus 16 ~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 16 PCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp TTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999988777 6899987
No 114
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=22.86 E-value=23 Score=28.99 Aligned_cols=41 Identities=24% Similarity=0.468 Sum_probs=28.8
Q ss_pred cceeecCCCccccc--ccccCCccchhhhhhhhcCCCCCCCCCC
Q 001071 150 ICGMKGCDEKVMQN--KCDCGFKICRECYLECAGNGGGRCPGCK 191 (1165)
Q Consensus 150 ~C~i~gcd~~~~~d--~CeC~f~iCr~Cy~~~~k~g~~~Cp~Ck 191 (1165)
.|.||-.+...... ...|+=..|+.|...-.+. ++.||-|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 58886666544333 3379999999999776655 47999995
No 115
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=22.46 E-value=40 Score=33.74 Aligned_cols=30 Identities=20% Similarity=0.586 Sum_probs=16.7
Q ss_pred chhh-hhhhhcCCCCCCCCCCCccccCCCCC
Q 001071 172 CREC-YLECAGNGGGRCPGCKEPYKDASDGE 201 (1165)
Q Consensus 172 Cr~C-y~~~~k~g~~~Cp~Ck~~yk~~~~~~ 201 (1165)
|++| ++++..+-.-.||.|+.+-.....|+
T Consensus 73 C~~Cg~~~~~~~~~~~CP~Cgs~~~~i~~G~ 103 (113)
T PRK12380 73 CWDCSQVVEIHQHDAQCPHCHGERLRVDTGD 103 (113)
T ss_pred cccCCCEEecCCcCccCcCCCCCCcEEccCC
Confidence 4444 34445445566999997643333343
No 116
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=22.42 E-value=48 Score=26.44 Aligned_cols=25 Identities=36% Similarity=1.043 Sum_probs=22.0
Q ss_pred ccCCccchhhhhhhhc-CCCCCCCCC
Q 001071 166 DCGFKICRECYLECAG-NGGGRCPGC 190 (1165)
Q Consensus 166 eC~f~iCr~Cy~~~~k-~g~~~Cp~C 190 (1165)
+|+-..|+.|...-.+ .+...||.|
T Consensus 16 ~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 16 PCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp TTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred cCCCcchHHHHHHHHHhcCCccCCcC
Confidence 7888999999988877 778889987
No 117
>KOG3103 consensus Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.54 E-value=3.5e+02 Score=30.93 Aligned_cols=76 Identities=16% Similarity=0.273 Sum_probs=41.8
Q ss_pred HHHHHHHHcCcccceEeCCCCCCCCCCCccccceeEeecccchHHHHHHHHHHHHHHHHHHHHHHcCCCCchhhhHHHHH
Q 001071 1026 LQGLLKVIAGVDISFTLTSKSATPEDGDDQFAELYEVKWSFLMVPPITIMMVNVIAIAVGVARTMYSPFPQWSRLIGGVF 1105 (1165)
Q Consensus 1026 ~~aLLk~Lgg~~~~F~VTpKg~~~dd~~~~~~ely~f~wSsLliP~~tLllLnLvaIv~Gi~r~i~~~~~~w~~l~g~l~ 1105 (1165)
+-.++++++.++..|.-|...- .| -++|.++|..++++--..|..+. +..++
T Consensus 155 iy~L~nlm~~~nv~f~~~aSVl-------GY----------cLLPlvvlS~v~i~~~~~g~vg~-----------il~~~ 206 (249)
T KOG3103|consen 155 IYFLLNLMSNKNVSFGCVASVL-------GY----------CLLPLVVLSFVNIFVGLQGTVGY-----------ILSAL 206 (249)
T ss_pred HHHHHHHHhhcCcceeeehHHH-------HH----------HHHHHHHHHHHHHHHhccchHHH-----------HHHHH
Confidence 3445666776777776664332 12 25676666544443223333332 34556
Q ss_pred HHHHHHHhHHHHHHHHhccCCCce
Q 001071 1106 FSLWVLSHLYPFAKGLMGRRGKVS 1129 (1165)
Q Consensus 1106 ~~~Wvl~nL~Pf~kgL~gR~~r~P 1129 (1165)
+++|..+-.--++-+...-+++.+
T Consensus 207 ~v~W~t~aaS~lfv~al~~~~~rl 230 (249)
T KOG3103|consen 207 FVLWCTYAASKLFVSALSMENQRL 230 (249)
T ss_pred HHHHHHHHHHHHHHHHhhccccch
Confidence 677888876666666555455544
No 118
>PRK00068 hypothetical protein; Validated
Probab=21.46 E-value=1.5e+03 Score=30.85 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=26.9
Q ss_pred HHHHHHHHhHHHHHHHHhccCCCceehhHHHHHHHHHHHHHhh
Q 001071 1105 FFSLWVLSHLYPFAKGLMGRRGKVSTIVFLWSGLISLIISLLW 1147 (1165)
Q Consensus 1105 ~~~~Wvl~nL~Pf~kgL~gR~~r~P~~v~~~s~ll~~~~sllw 1147 (1165)
++.+-+++...-|+.+++.|+-|+|.+..+..++.++++..+|
T Consensus 262 iL~~ia~i~a~~~~~~~~~~~~rlp~i~~~l~v~s~~v~g~i~ 304 (970)
T PRK00068 262 ILLVIAVICAIAVFSSIVLRDLRIPAIASVLLILSSIIVGAAW 304 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455555665666889888877777777666655
No 119
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=21.36 E-value=1.9e+02 Score=32.40 Aligned_cols=44 Identities=30% Similarity=0.561 Sum_probs=23.7
Q ss_pred HHHHHHhHHHHHHHHhccCCCceehhHHHHHHHHH-HHHHhhheecC
Q 001071 1107 SLWVLSHLYPFAKGLMGRRGKVSTIVFLWSGLISL-IISLLWVYISP 1152 (1165)
Q Consensus 1107 ~~Wvl~nL~Pf~kgL~gR~~r~P~~v~~~s~ll~~-~~sllwv~i~~ 1152 (1165)
.+++++..+|++..|.+- .+..+.++.|+.|++ ++++-|+..-|
T Consensus 204 ~l~~l~~~~P~lg~l~~~--~~~~~~~~~s~~lsl~~Ia~aW~~yRP 248 (248)
T PF07787_consen 204 PLYTLVDWIPLLGNLVGF--GLFLVAFIISFSLSLLTIALAWLFYRP 248 (248)
T ss_pred HHHHHHhhhceeechhhh--HHHHHHHHHHHHHHHHHHHHhheeeCc
Confidence 355666667776554331 111222444544444 77778987765
No 120
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=21.32 E-value=1.2e+02 Score=32.18 Aligned_cols=36 Identities=8% Similarity=-0.046 Sum_probs=29.5
Q ss_pred EEEeCCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEcCCCCch
Q 001071 393 VFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGAL 436 (1165)
Q Consensus 393 VFV~TaDP~kEPp~vt~nTVLSilA~DYP~~Kls~YvsDDG~s~ 436 (1165)
+.|+|+ +|....+.+|+-|+++.+ ..+.|.|||...
T Consensus 1 ~vI~~y---n~~~~~l~~~l~sl~~q~-----~~iivvDn~s~~ 36 (237)
T cd02526 1 AVVVTY---NPDLSKLKELLAALAEQV-----DKVVVVDNSSGN 36 (237)
T ss_pred CEEEEe---cCCHHHHHHHHHHHhccC-----CEEEEEeCCCCc
Confidence 468899 888899999999999972 358888887665
No 121
>COG0601 DppB ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=21.28 E-value=1.4e+03 Score=26.99 Aligned_cols=76 Identities=21% Similarity=0.492 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHH--HHcCCCCchhhhHHHHHHHHHHHHhHHHHHHHHhccCCCceehhHHHHHHHHHHHH
Q 001071 1067 LMVPPITIMMVNVIAIAVGVAR--TMYSPFPQWSRLIGGVFFSLWVLSHLYPFAKGLMGRRGKVSTIVFLWSGLISLIIS 1144 (1165)
Q Consensus 1067 LliP~~tLllLnLvaIv~Gi~r--~i~~~~~~w~~l~g~l~~~~Wvl~nL~Pf~kgL~gR~~r~P~~v~~~s~ll~~~~s 1144 (1165)
.++|.++++.+.+..++.|..- .+. .+++ +|.++... +..+=+|++.|.+. +..+-.++...+.=
T Consensus 237 aliP~it~~~~~~~~ll~GavivE~iF-~~PG----iG~l~~~A-i~~~D~pli~g~~~-------i~~~~~i~~nli~D 303 (317)
T COG0601 237 ALLPVITVLGLQLGGLLGGAVVVETVF-SWPG----LGRLLVDA-ILNRDYPVVQGIVL-------VIALLVILGNLLVD 303 (317)
T ss_pred hHHHHHHHHHHHHHHHHhCHhHhhhhc-CCCC----hHHHHHHH-HHccCHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 5788888888888888777532 222 2232 34443332 12233777766643 22222233333455
Q ss_pred HhhheecCCCC
Q 001071 1145 LLWVYISPPSG 1155 (1165)
Q Consensus 1145 llwv~i~~~~~ 1155 (1165)
++...+||-..
T Consensus 304 ily~~lDPRir 314 (317)
T COG0601 304 ILYALLDPRIR 314 (317)
T ss_pred HHHHhcCCccC
Confidence 58888888653
No 122
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=21.18 E-value=1.6e+02 Score=35.29 Aligned_cols=27 Identities=7% Similarity=-0.005 Sum_probs=21.7
Q ss_pred CCEEEeecCCCcCCchHHHHHHHHHhh
Q 001071 642 GPFILNLDCDHYIYNSLALREGMCFML 668 (1165)
Q Consensus 642 gpfIlnlDcD~y~nns~~Lr~amcff~ 668 (1165)
.++|++.|||+=.-+++.+++.+..+.
T Consensus 96 ~d~VLVhdadrPfv~~e~I~~li~~~~ 122 (378)
T PRK09382 96 SEYVLIHDAARPFVPKELIDRLIEALD 122 (378)
T ss_pred CCeEEEeeccccCCCHHHHHHHHHHhh
Confidence 489999999986557898888777554
No 123
>PTZ00218 40S ribosomal protein S29; Provisional
Probab=20.71 E-value=61 Score=28.92 Aligned_cols=30 Identities=20% Similarity=0.602 Sum_probs=22.7
Q ss_pred CCCCCcceeecCCCcccccccccCCccchhhhh
Q 001071 145 VKSGLICGMKGCDEKVMQNKCDCGFKICRECYL 177 (1165)
Q Consensus 145 ~~~g~~C~i~gcd~~~~~d~CeC~f~iCr~Cy~ 177 (1165)
|..+..|.+||--.++.+ -.+--+||.|+-
T Consensus 13 GkGsr~C~vCg~~~gliR---kygL~~CRqCFR 42 (54)
T PTZ00218 13 GKGSRQCRVCSNRHGLIR---KYGLNVCRQCFR 42 (54)
T ss_pred CCCCCeeecCCCcchhhh---hcCcchhhHHHH
Confidence 777889999998887776 234448999983
No 124
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=20.71 E-value=51 Score=28.76 Aligned_cols=29 Identities=24% Similarity=0.649 Sum_probs=18.7
Q ss_pred cceeecCCCccccc-ccccCCccchhhhhhh
Q 001071 150 ICGMKGCDEKVMQN-KCDCGFKICRECYLEC 179 (1165)
Q Consensus 150 ~C~i~gcd~~~~~d-~CeC~f~iCr~Cy~~~ 179 (1165)
.|.|||-..+.+.. .=+=+| ||.+|++-.
T Consensus 1 ~C~iCg~kigl~~~~k~~DG~-iC~~C~~Kl 30 (51)
T PF14471_consen 1 KCAICGKKIGLFKRFKIKDGY-ICKDCLKKL 30 (51)
T ss_pred CCCccccccccccceeccCcc-chHHHHHHh
Confidence 59998888776642 223344 888888544
No 125
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=20.54 E-value=1.5e+02 Score=32.08 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=30.7
Q ss_pred ccEEEeCCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhH
Q 001071 391 IDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGALLTF 439 (1165)
Q Consensus 391 VDVFV~TaDP~kEPp~vt~nTVLSilA~DYP~~Kls~YvsDDG~s~lTf 439 (1165)
|-|+|+|+ +|.. .+..++-|+... . + .++|.|||...-|-
T Consensus 2 isvii~~~---Ne~~-~l~~~l~sl~~~--~-~--eiivvD~gStD~t~ 41 (229)
T cd02511 2 LSVVIITK---NEER-NIERCLESVKWA--V-D--EIIVVDSGSTDRTV 41 (229)
T ss_pred EEEEEEeC---CcHH-HHHHHHHHHhcc--c-C--EEEEEeCCCCccHH
Confidence 67999999 6664 568888888765 1 1 59999999988554
Done!