Query 001071
Match_columns 1165
No_of_seqs 390 out of 1534
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 09:34:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001071.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001071hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 100.0 2.9E-48 9.8E-53 478.6 51.0 494 307-1123 66-572 (802)
2 1weo_A Cellulose synthase, cat 99.9 3.6E-24 1.2E-28 195.3 5.6 63 145-207 13-86 (93)
3 2z86_A Chondroitin synthase; G 99.2 1E-10 3.5E-15 139.5 18.4 68 609-687 150-217 (625)
4 1xhb_A Polypeptide N-acetylgal 99.2 8.1E-11 2.8E-15 135.9 16.6 49 385-436 25-73 (472)
5 2d7i_A Polypeptide N-acetylgal 99.1 3.8E-10 1.3E-14 134.6 14.6 48 386-436 109-156 (570)
6 2ffu_A Ppgalnact-2, polypeptid 99.1 9.4E-10 3.2E-14 128.4 14.9 48 386-436 63-110 (501)
7 1qg8_A Protein (spore coat pol 99.0 9.4E-10 3.2E-14 115.1 10.0 55 624-685 75-129 (255)
8 3bcv_A Putative glycosyltransf 98.9 3.4E-09 1.1E-13 109.7 11.9 44 387-436 3-46 (240)
9 2z86_A Chondroitin synthase; G 98.8 1.5E-08 5E-13 121.0 12.1 103 609-729 432-534 (625)
10 3ckj_A Putative uncharacterize 98.3 7.4E-07 2.5E-11 98.8 8.7 54 624-683 118-171 (329)
11 4fix_A UDP-galactofuranosyl tr 98.2 5.9E-06 2E-10 100.8 13.8 63 609-680 242-304 (657)
12 3l7i_A Teichoic acid biosynthe 98.1 2.7E-07 9.3E-12 112.9 0.0 59 609-680 60-118 (729)
13 3f1y_A Mannosyl-3-phosphoglyce 97.1 0.00054 1.8E-08 78.6 7.2 99 625-731 167-273 (387)
14 2fy7_A Beta-1,4-galactosyltran 96.8 0.00054 1.8E-08 75.6 3.2 53 866-918 201-263 (287)
15 1e4u_A Transcriptional repress 95.4 0.011 3.7E-07 53.4 4.0 49 147-196 10-62 (78)
16 2nxv_A ATP synthase subunits r 93.4 0.1 3.6E-06 55.3 6.7 50 625-679 62-113 (249)
17 1t1h_A Gspef-atpub14, armadill 85.2 0.37 1.3E-05 42.2 2.2 47 147-196 7-55 (78)
18 2kre_A Ubiquitin conjugation f 81.5 0.57 2E-05 43.9 2.0 46 147-196 28-75 (100)
19 1wgm_A Ubiquitin conjugation f 81.0 0.7 2.4E-05 43.2 2.4 45 148-196 22-69 (98)
20 2c2l_A CHIP, carboxy terminus 79.9 0.65 2.2E-05 49.5 2.0 48 146-196 206-255 (281)
21 2f42_A STIP1 homology and U-bo 79.7 0.66 2.2E-05 48.2 1.9 47 147-196 105-153 (179)
22 2kr4_A Ubiquitin conjugation f 78.9 0.71 2.4E-05 41.8 1.7 46 147-196 13-60 (85)
23 2ckl_B Ubiquitin ligase protei 74.6 1.3 4.3E-05 44.5 2.3 48 148-196 54-102 (165)
24 2d8s_A Cellular modulator of i 71.4 2.3 7.7E-05 38.5 2.9 52 145-196 12-70 (80)
25 3fl2_A E3 ubiquitin-protein li 66.4 2.8 9.4E-05 40.0 2.5 45 149-196 53-99 (124)
26 1fo8_A Alpha-1,3-mannosyl-glyc 65.6 4.6 0.00016 45.8 4.5 44 388-436 1-44 (343)
27 2ecy_A TNF receptor-associated 64.6 3.7 0.00013 34.6 2.7 47 147-196 14-62 (66)
28 2ct2_A Tripartite motif protei 64.1 3.4 0.00011 36.5 2.5 50 147-196 14-68 (88)
29 1z6u_A NP95-like ring finger p 62.6 3.4 0.00012 41.2 2.5 45 149-196 79-125 (150)
30 2ysl_A Tripartite motif-contai 62.0 4.6 0.00016 34.5 2.9 47 147-196 19-69 (73)
31 2ecv_A Tripartite motif-contai 62.0 5 0.00017 34.9 3.2 47 147-196 18-71 (85)
32 3l11_A E3 ubiquitin-protein li 61.8 3.1 0.0001 39.1 1.8 45 148-195 15-61 (115)
33 1g25_A CDK-activating kinase a 60.9 4.8 0.00016 33.9 2.7 49 148-196 3-55 (65)
34 2kiz_A E3 ubiquitin-protein li 59.0 9.7 0.00033 32.2 4.4 51 145-196 11-63 (69)
35 2ecw_A Tripartite motif-contai 58.7 5.5 0.00019 34.6 2.8 49 147-196 18-71 (85)
36 2ecm_A Ring finger and CHY zin 56.8 6 0.00021 31.8 2.6 48 146-194 3-53 (55)
37 3ztg_A E3 ubiquitin-protein li 55.0 4.4 0.00015 36.3 1.6 46 147-195 12-61 (92)
38 1jm7_A BRCA1, breast cancer ty 54.4 8.4 0.00029 35.5 3.5 46 148-196 21-70 (112)
39 3vk6_A E3 ubiquitin-protein li 54.1 6.6 0.00023 37.4 2.7 29 168-196 21-49 (101)
40 2y1n_A E3 ubiquitin-protein li 53.3 5.2 0.00018 46.2 2.2 46 148-196 332-379 (389)
41 2egp_A Tripartite motif-contai 52.8 5.5 0.00019 34.4 1.8 47 147-196 11-65 (79)
42 3hct_A TNF receptor-associated 52.6 4.3 0.00015 38.5 1.2 46 148-196 18-65 (118)
43 2yur_A Retinoblastoma-binding 51.0 7.8 0.00027 33.6 2.5 47 147-196 14-64 (74)
44 1iym_A EL5; ring-H2 finger, ub 50.5 11 0.00039 30.2 3.2 47 147-194 4-53 (55)
45 2ect_A Ring finger protein 126 49.5 12 0.00039 32.5 3.3 51 145-196 12-64 (78)
46 1jm7_B BARD1, BRCA1-associated 49.3 12 0.00041 35.3 3.7 46 148-196 22-67 (117)
47 4ayc_A E3 ubiquitin-protein li 49.0 8 0.00027 37.6 2.5 44 149-196 54-99 (138)
48 2ckl_A Polycomb group ring fin 47.9 8.6 0.00029 35.7 2.4 47 148-196 15-62 (108)
49 2ea6_A Ring finger protein 4; 47.7 6.3 0.00021 33.0 1.3 50 146-196 13-68 (69)
50 2y43_A E3 ubiquitin-protein li 46.7 9.7 0.00033 34.7 2.5 45 148-196 22-69 (99)
51 2djb_A Polycomb group ring fin 45.6 10 0.00035 32.6 2.3 46 147-196 14-62 (72)
52 2xeu_A Ring finger protein 4; 44.8 5.5 0.00019 32.9 0.5 48 148-196 3-56 (64)
53 2d8t_A Dactylidin, ring finger 43.7 16 0.00054 31.3 3.2 48 145-196 12-61 (71)
54 1vyx_A ORF K3, K3RING; zinc-bi 42.9 14 0.00048 31.5 2.7 50 147-196 5-59 (60)
55 2zet_C Melanophilin; complex, 42.7 3.3 0.00011 42.0 -1.4 47 146-192 66-116 (153)
56 1rmd_A RAG1; V(D)J recombinati 42.4 8.3 0.00028 36.2 1.4 46 148-196 23-70 (116)
57 3lrq_A E3 ubiquitin-protein li 41.6 11 0.00037 34.7 2.0 48 148-196 22-70 (100)
58 2csy_A Zinc finger protein 183 41.0 18 0.00061 31.6 3.2 45 147-195 14-60 (81)
59 2ep4_A Ring finger protein 24; 39.5 14 0.00049 31.5 2.3 49 147-196 14-64 (74)
60 2lri_C Autoimmune regulator; Z 39.2 20 0.00067 31.4 3.1 53 139-193 3-59 (66)
61 3hcs_A TNF receptor-associated 38.6 9.7 0.00033 38.1 1.2 46 148-196 18-65 (170)
62 1chc_A Equine herpes virus-1 r 38.3 19 0.00066 30.1 2.9 48 147-196 4-52 (68)
63 1v87_A Deltex protein 2; ring- 36.4 26 0.00089 32.5 3.7 49 148-196 25-94 (114)
64 1x4j_A Ring finger protein 38; 36.1 16 0.00055 31.5 2.1 51 145-196 20-72 (75)
65 2bo4_A Mannosylglycerate synth 35.2 53 0.0018 37.8 6.8 52 624-677 75-126 (397)
66 2yu4_A E3 SUMO-protein ligase 33.9 13 0.00044 34.0 1.1 45 148-195 7-62 (94)
67 1zbd_B Rabphilin-3A; G protein 33.2 14 0.00049 36.6 1.5 35 145-179 52-90 (134)
68 1d4u_A Nucleotide excision rep 31.6 18 0.00063 34.9 1.8 31 166-196 2-38 (111)
69 3nw0_A Non-structural maintena 31.1 33 0.0011 36.9 3.9 48 147-196 179-229 (238)
70 2csz_A Synaptotagmin-like prot 31.0 24 0.00081 32.1 2.3 39 143-181 20-62 (76)
71 1bor_A Transcription factor PM 30.0 38 0.0013 27.8 3.3 42 148-196 6-49 (56)
72 2l0b_A E3 ubiquitin-protein li 30.0 19 0.00065 32.5 1.6 49 146-195 38-88 (91)
73 3q80_A 2-C-methyl-D-erythritol 29.4 76 0.0026 33.5 6.3 43 626-669 85-127 (231)
74 2vrw_B P95VAV, VAV1, proto-onc 28.4 22 0.00076 40.2 2.2 35 143-177 352-390 (406)
75 2gmg_A Hypothetical protein PF 25.9 27 0.00091 33.5 1.8 25 164-194 69-94 (105)
76 2ea5_A Cell growth regulator w 25.7 63 0.0021 27.8 4.1 46 145-196 12-58 (68)
77 3ng2_A RNF4, snurf, ring finge 25.5 20 0.00068 30.2 0.8 49 147-196 9-63 (71)
78 2ysj_A Tripartite motif-contai 25.3 31 0.0011 28.5 2.0 41 147-190 19-63 (63)
79 3htk_C E3 SUMO-protein ligase 24.8 21 0.00072 39.3 1.0 46 148-196 181-232 (267)
80 2ecj_A Tripartite motif-contai 24.7 57 0.002 26.1 3.5 43 147-190 14-58 (58)
81 2kdx_A HYPA, hydrogenase/ureas 24.1 16 0.00056 35.0 0.0 24 178-201 83-107 (119)
82 3h0g_L DNA-directed RNA polyme 23.3 36 0.0012 29.9 2.0 26 146-171 19-48 (63)
83 2ecg_A Baculoviral IAP repeat- 22.6 56 0.0019 28.3 3.2 41 148-196 25-68 (75)
84 3knv_A TNF receptor-associated 22.5 11 0.00036 37.3 -1.7 44 148-194 31-76 (141)
85 4a0k_B E3 ubiquitin-protein li 21.9 16 0.00053 35.5 -0.6 75 120-196 13-112 (117)
86 3a43_A HYPD, hydrogenase nicke 21.5 16 0.00056 36.2 -0.6 13 184-196 107-119 (139)
87 2ecn_A Ring finger protein 141 20.1 17 0.0006 30.7 -0.6 47 147-196 14-60 (70)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=100.00 E-value=2.9e-48 Score=478.60 Aligned_cols=494 Identities=21% Similarity=0.333 Sum_probs=379.6
Q ss_pred hH-HHHHHHHHHHHHHHHHhccCCC-c----hhhHHHHHHHHHHHHHHHHHHhhcccceeeccccchhhHHhhhcCCCCC
Q 001071 307 RL-IIVTRLAALALFLAWRIRHPNR-E----AMWLWGMSITCEFWFAFSWVFDQLPKLCPVNRVTDLTVLKDRFESPNLC 380 (1165)
Q Consensus 307 R~-~i~~~lv~l~~~l~wRi~~~~~-~----~~~lW~~~~~~Eiwfaf~wiL~q~~kw~Pv~R~t~~d~L~~r~~~~~~~ 380 (1165)
|+ ++++.+++.++|++||++.+.. . ..++|++++++|+++.+.|++.++..|+|+.|...++
T Consensus 66 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~------------ 133 (802)
T 4hg6_A 66 RFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRP------------ 133 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHhheecCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC------------
Confidence 54 4455566678999999998754 2 3568899999999999999999999999999874321
Q ss_pred CCCCCCCCCcccEEEeCCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEcCCCCchhhHHHHHHHHhhhhhhhhhhhhcC
Q 001071 381 NPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGALLTFEALAETASFARIWVPFCRKHN 460 (1165)
Q Consensus 381 ~p~~~~~LP~VDVFV~TaDP~kEPp~vt~nTVLSilA~DYP~~Kls~YvsDDG~s~lTf~al~Eaa~FA~~WvPFCkK~~ 460 (1165)
..++++|.|+|+|||| ||++.++.+|+.|++++|||.+|+.|+|.|||.++-|.+.
T Consensus 134 --~~~~~~P~VSViIPty---Ne~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~------------------- 189 (802)
T 4hg6_A 134 --LQPEELPTVDILVPSY---NEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMS------------------- 189 (802)
T ss_dssp --CCTTTCCCEEEEEECT---TCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTC-------------------
T ss_pred --CCccCCCcEEEEEEEC---CCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCcccccc-------------------
Confidence 0146799999999999 9999999999999999999999999999999998733221
Q ss_pred CCCCChhhhhhhccccccccchhhhHHHHHHHHHHHHHHHHHHhcchhhhhccccccchHHHHHHHHHHhhcCCCCCCcc
Q 001071 461 IEPRNPEAYFEQKRNFLKNKIRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRAKKKQMEMGGSTAEPV 540 (1165)
Q Consensus 461 IepR~Pe~YFs~k~~~~~~~~~~~f~~e~~~mKreYeefk~rI~~l~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~ 540 (1165)
.+|+.+++.++ .+++++ .+. ++
T Consensus 190 --------------------~d~~i~~~~~~---~~~~l~----~~~-------------~~------------------ 211 (802)
T 4hg6_A 190 --------------------PDPELAQKAQE---RRRELQ----QLC-------------RE------------------ 211 (802)
T ss_dssp --------------------SSHHHHHHHHH---HHHHHH----HHH-------------HH------------------
T ss_pred --------------------CCHHHHHHHHh---hhHHHH----HHH-------------Hh------------------
Confidence 11222222111 111111 110 00
Q ss_pred cCCcccccCCCCCCCCCcCCCCCCCCCCCccceEEeecCCCCCCCCCCcccCCCCcccccccccccCcEEEEEecCCCCC
Q 001071 541 KVPKATWMSDGSHWPGTWTSGEPDHSRGDHAGIIQAMLAPPNAEPVFGVEADGENLIDSTEVDVRLPMLVYVSREKRPGY 620 (1165)
Q Consensus 541 ~~p~~~wm~dgt~wpg~w~~~~~~~~~~dH~~iiqv~l~~~~~~~~~g~~~~~~~~~D~~~~~~~lP~LvYvSREKRPg~ 620 (1165)
..+.|+.|+++
T Consensus 212 ------------------------------------------------------------------~~v~~i~~~~~--- 222 (802)
T 4hg6_A 212 ------------------------------------------------------------------LGVVYSTRERN--- 222 (802)
T ss_dssp ------------------------------------------------------------------HTCEEEECSSC---
T ss_pred ------------------------------------------------------------------cCcEEEEecCC---
Confidence 01358888764
Q ss_pred CcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCCCC-------Ccc
Q 001071 621 DHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGIDPN-------DRY 693 (1165)
Q Consensus 621 ~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid~~-------Dry 693 (1165)
++.||||+|..++. ++++||+++|||.++ +|++|++.+.+|.+ ++++++||+|+.|.|.++. +++
T Consensus 223 -~~GKa~alN~gl~~----a~gd~Il~lDaD~~~-~pd~L~~lv~~~~~--dp~v~~V~~~~~~~~~~~~~~~~~~~~~~ 294 (802)
T 4hg6_A 223 -EHAKAGNMSAALER----LKGELVVVFDADHVP-SRDFLARTVGYFVE--DPDLFLVQTPHFFINPDPIQRNLALGDRC 294 (802)
T ss_dssp -CSHHHHHHHHHHHH----CCCSEEEECCTTEEE-CTTHHHHHHHHHHH--SSSCCEEECCCCBSSCCHHHHHHTCCTTS
T ss_pred -CCcchHHHHHHHHh----cCCCEEEEECCCCCc-ChHHHHHHHHHHhc--CCCeEEEeccEEEeCCchHhhhhhHHhhh
Confidence 55899999999985 589999999999998 69999999999964 2899999999999987632 456
Q ss_pred cchhHHHHHhhccccccCCCceeccccchhhhhhhcCCCCCCcccccCccccchhhhcccCcccccccccccccccCCCC
Q 001071 694 ANHNTVFFDVAMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWFGSRKIKLCLRKPKVAKKVDDEIALPINGDH 773 (1165)
Q Consensus 694 ~n~~~vFfdi~~~glDG~qgp~yvGTGc~fRR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (1165)
.+++..||.....+.+.+++++++|+++++||+++..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~------------------------------------------- 331 (802)
T 4hg6_A 295 PPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRALDE------------------------------------------- 331 (802)
T ss_dssp CCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHHHH-------------------------------------------
T ss_pred hHHHHHHHHHHHhhHhhcCCceecccchhhhHHHHHH-------------------------------------------
Confidence 6788999999999999999999999999999999852
Q ss_pred CCChhhHhhhccCccccCchhhhhchhhhhhhcchhcccccCCCCCCCCCCCCCCCCccchHHHHHHhHhcccccccccc
Q 001071 774 NDDDADIESLLLPKRFGNSTSLAASIPVAEYQGRLLQDLQGKGNQGRPPGSLAVPREPLDAATVAEAISVISCFYEDKTE 853 (1165)
Q Consensus 774 ~~~~~e~~~~~~~~~fg~S~~f~~S~~~~e~~g~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~ea~~v~sC~YE~~T~ 853 (1165)
+|
T Consensus 332 ------------------------------vG------------------------------------------------ 333 (802)
T 4hg6_A 332 ------------------------------AG------------------------------------------------ 333 (802)
T ss_dssp ------------------------------HT------------------------------------------------
T ss_pred ------------------------------cC------------------------------------------------
Confidence 11
Q ss_pred cccccccccCcccchHHHHHHHHhCCcEEEEeecCCccccccCCCCHHHHHHHhHhhhcchhHHHhhhcccccccccccc
Q 001071 854 WGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASRRMKF 933 (1165)
Q Consensus 854 WG~evGw~~gSVTEDi~TGlrLh~rGWrSvY~~p~r~af~GlAPeTL~~~l~QR~RWA~G~iQIl~sk~~pL~~~~~Lsl 933 (1165)
||.+++++||.+++++|+.+||++.|+++ +.+++.+|+|+.++++||.||++|.+|+++. ++|++ .+++++
T Consensus 334 -----gf~~~~~~ED~~l~~rl~~~G~ri~~~~~--~~~~~~~p~t~~~~~~Qr~RW~~G~~q~l~~-~~pl~-~~~l~~ 404 (802)
T 4hg6_A 334 -----GFAGETITEDAETALEIHSRGWKSLYIDR--AMIAGLQPETFASFIQQRGRWATGMMQMLLL-KNPLF-RRGLGI 404 (802)
T ss_dssp -----TCCCSSSSHHHHHHHHHHTTTCCEEECCC--CCEEECCCCSHHHHHHHHHHHHHHHHHHHHH-SCTTS-CSSCCH
T ss_pred -----CcCCCCcchHHHHHHHHHHcCCeEEEecC--CEEEecCCCCHHHHHHHHHHHHccHHHHHHH-hCccc-cCCCCH
Confidence 67777889999999999999999999964 6778999999999999999999999999985 46665 688999
Q ss_pred ccchhhhhhHHHhhHHHHHHHHHHHHHHHHHhCCcchhcchHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccchhhHH
Q 001071 934 LQRVAYFNVGMYPFTSMFLLVYCILPAVSLFSGQFIVQSLSISFLIYLLAITVTLCMLALLEIKWSGITLHDWWRNEQFW 1013 (1165)
Q Consensus 934 ~QRL~Yl~~~lypl~si~~liylllP~l~LltG~~iip~~s~~fliy~lplfls~~l~slLe~rwsG~sl~~WWr~qr~W 1013 (1165)
.+|++|+..+++++.+++.++++++|+++++++..++......++.+++|+++...+.... .. +.....|| ++.++
T Consensus 405 ~~rl~~l~~~~~~~~~~~~li~ll~p~~~ll~~~~~~~~~~~~~~~~~lp~~l~~~~~~~~--~~-~~~r~~~~-~~l~~ 480 (802)
T 4hg6_A 405 AQRLCYLNSMSFWFFPLVRMMFLVAPLIYLFFGIEIFVATFEEVLAYMPGYLAVSFLVQNA--LF-ARQRWPLV-SEVYE 480 (802)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHHHHH--HH-TTTSCTTH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHHHHHHHHHH--Hh-cCcHHHHH-HHHHH
Confidence 9999999999999999999999999999999999988887777777777777654432211 12 22111233 33333
Q ss_pred HhhhhhhHHHHHHHHHHHHHcCcccceEeCCCCCCCCCCCccccceeEeecccchHHHHHHHHHHHHHHHHHHHHHHcCC
Q 001071 1014 VIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGDDQFAELYEVKWSFLMVPPITIMMVNVIAIAVGVARTMYSP 1093 (1165)
Q Consensus 1014 ~I~~tsa~L~Av~~aLLk~Lgg~~~~F~VTpKg~~~dd~~~~~~ely~f~wSsLliP~~tLllLnLvaIv~Gi~r~i~~~ 1093 (1165)
.+... ..+.+++.+ .+++++.+|+||+|+... +..+ | + .++.|++++++++++++++|+++.....
T Consensus 481 ~~~~~-~~~~a~l~~---l~~~~~~~f~VT~Kg~~~---~~~~-----~-~-~~~~p~~~~~~l~~~~~~~~~~~~~~~~ 546 (802)
T 4hg6_A 481 VAQAP-YLARAIVTT---LLRPRSARFAVTAKDETL---SENY-----I-S-PIYRPLLFTFLLCLSGVLATLVRWVAFP 546 (802)
T ss_dssp HHHHH-HHHHHHHHH---HHSTTCCCCCCCCCCCCC---SSCC-----B-C-TTCHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHH-HHHHHHHHH---HhCCCCCcceECCCCccc---cccc-----h-h-hHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 33211 112233333 356788999999998722 2222 1 2 4678999999999999999999877543
Q ss_pred CCchhhhHHHHHHHHHHHHhHHHHHHHHhc
Q 001071 1094 FPQWSRLIGGVFFSLWVLSHLYPFAKGLMG 1123 (1165)
Q Consensus 1094 ~~~w~~l~g~l~~~~Wvl~nL~Pf~kgL~g 1123 (1165)
. ...+.+++++|+++|++.+.-++..
T Consensus 547 ~----~~~~~~~~~~w~~~~l~~l~~~~~~ 572 (802)
T 4hg6_A 547 G----DRSVLLVVGGWAVLNVLLVGFALRA 572 (802)
T ss_dssp G----GHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred C----ccchhhhhhHHHHHHHHHHHHHHHH
Confidence 2 2345778899999999999988873
No 2
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=99.89 E-value=3.6e-24 Score=195.34 Aligned_cols=63 Identities=33% Similarity=0.753 Sum_probs=58.2
Q ss_pred CCCCCcceeecCCCccccc-----cc-ccCCccchhhhhhhhcCCCCCCCCCCCccccCC-----CCCcccccc
Q 001071 145 VKSGLICGMKGCDEKVMQN-----KC-DCGFKICRECYLECAGNGGGRCPGCKEPYKDAS-----DGEIEDEVI 207 (1165)
Q Consensus 145 ~~~g~~C~i~gcd~~~~~d-----~C-eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~~~-----~~~~e~~~~ 207 (1165)
.+++|+|||||++++++.| || ||+|||||+|||||||||+|+||||||+||||| +|||||++.
T Consensus 13 ~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp~v~GDe~e~d~ 86 (93)
T 1weo_A 13 NLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGDEDEEDI 86 (93)
T ss_dssp CCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTSCCCCCS
T ss_pred ccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCCCCcccccccccc
Confidence 5689999999999999988 99 999999999999999999999999999999998 787766554
No 3
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.24 E-value=1e-10 Score=139.47 Aligned_cols=68 Identities=18% Similarity=0.235 Sum_probs=53.9
Q ss_pred EEEEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCC
Q 001071 609 LVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGI 687 (1165)
Q Consensus 609 LvYvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~ni 687 (1165)
+.|+.+++. .+.||+|+|..++. +.|+||+++|+|+++ .|++|.+.+.+|.. .+.+++|+..+.+.+.
T Consensus 150 i~~i~~~~~----~~g~~~a~N~g~~~----a~g~~v~~lD~D~~~-~~~~l~~~~~~~~~--~~~~~~~g~~~~~~~~ 217 (625)
T 2z86_A 150 IKYVRQKDY----GYQLCAVRNLGLRA----AKYNYVAILDCDMAP-NPLWVQSYMELLAV--DDNVALIGPRKYIDTS 217 (625)
T ss_dssp EEEEEECCC----SCCHHHHHHHHHHH----CCSSEEEEECTTEEE-CTTHHHHHHHHHHH--CTTEEEECCEEEECCT
T ss_pred eEEEEeCCC----CcchhHHHHHHHHh----CCcCEEEEECCCCCC-CHHHHHHHHHHHhc--CCceEEEEeeeeccCc
Confidence 557765432 23599999998875 589999999999998 69999999999985 2788888877766544
No 4
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=99.23 E-value=8.1e-11 Score=135.93 Aligned_cols=49 Identities=18% Similarity=0.112 Sum_probs=44.2
Q ss_pred CCCCCcccEEEeCCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEcCCCCch
Q 001071 385 RSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGAL 436 (1165)
Q Consensus 385 ~~~LP~VDVFV~TaDP~kEPp~vt~nTVLSilA~DYP~~Kls~YvsDDG~s~ 436 (1165)
+.++|.|.|+|+|+ +|+...+..||-|+++.+||..+.-|+|.|||...
T Consensus 25 ~~~~p~vSVIIp~y---N~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d 73 (472)
T 1xhb_A 25 PDNLPTTSVVIVFH---NEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASER 73 (472)
T ss_dssp CSCCCCEEEEEEES---SCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCC
T ss_pred CcCCCCeEEEEEeC---CCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCc
Confidence 35799999999999 89988999999999999999767789999999875
No 5
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=99.10 E-value=3.8e-10 Score=134.62 Aligned_cols=48 Identities=21% Similarity=0.142 Sum_probs=43.3
Q ss_pred CCCCcccEEEeCCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEcCCCCch
Q 001071 386 SDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGAL 436 (1165)
Q Consensus 386 ~~LP~VDVFV~TaDP~kEPp~vt~nTVLSilA~DYP~~Kls~YvsDDG~s~ 436 (1165)
+++|.|.|+|+|+ +|+...+..||-|+++..||...+-|+|.|||...
T Consensus 109 ~~~P~vSVIIp~y---Ne~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D 156 (570)
T 2d7i_A 109 ETLPNTSIIIPFH---NEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDR 156 (570)
T ss_dssp SSCCCEEEEEEES---SCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCC
T ss_pred CCCCCeEEEEEEC---CCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCc
Confidence 5689999999999 88888999999999999999766689999999876
No 6
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=99.06 E-value=9.4e-10 Score=128.44 Aligned_cols=48 Identities=25% Similarity=0.236 Sum_probs=43.3
Q ss_pred CCCCcccEEEeCCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEcCCCCch
Q 001071 386 SDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGAL 436 (1165)
Q Consensus 386 ~~LP~VDVFV~TaDP~kEPp~vt~nTVLSilA~DYP~~Kls~YvsDDG~s~ 436 (1165)
.++|.|.|+|+|+ +|+...+..||-|+++..||....-|+|.|||...
T Consensus 63 ~~~p~vSVIIp~y---N~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D 110 (501)
T 2ffu_A 63 VDLPATSVVITFH---NEARSALLRTVVSVLKKSPPHLIKEIILVDDYSND 110 (501)
T ss_dssp SSCCCEEEEEEES---SCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSC
T ss_pred cCCCCEEEEEEeC---cCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCc
Confidence 5799999999999 89877899999999999999766789999998875
No 7
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=98.99 E-value=9.4e-10 Score=115.13 Aligned_cols=55 Identities=11% Similarity=0.030 Sum_probs=47.1
Q ss_pred CchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeec
Q 001071 624 KKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFE 685 (1165)
Q Consensus 624 ~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~ 685 (1165)
-+++|+|..++. ++|+||+.+|+|.++ .|++|.+.+..|.. .+++++|.....+.
T Consensus 75 G~~~a~N~gi~~----a~g~~i~~lD~Dd~~-~~~~l~~~~~~~~~--~~~~~~v~~~~~~~ 129 (255)
T 1qg8_A 75 RYAALINQAIEM----AEGEYITYATDDNIY-MPDRLLKMVRELDT--HPEKAVIYSASKTY 129 (255)
T ss_dssp HHHHHHHHHHHH----CCCSEEEEEETTEEE-CTTHHHHHHHHHHH--CTTCCEEEEEEEEE
T ss_pred CHHHHHHHHHHH----cCCCEEEEeCCCCcc-ChHHHHHHHHHHHh--CCCceEEEeceEEE
Confidence 489999998875 589999999999998 69999999999986 26888888876655
No 8
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=98.94 E-value=3.4e-09 Score=109.71 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=38.6
Q ss_pred CCCcccEEEeCCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEcCCCCch
Q 001071 387 DLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGAL 436 (1165)
Q Consensus 387 ~LP~VDVFV~TaDP~kEPp~vt~nTVLSilA~DYP~~Kls~YvsDDG~s~ 436 (1165)
..|.|.|+|+|+ +++ ..+..++-|+++.+|| .+-++|.|||...
T Consensus 3 ~~p~vsViIp~y---n~~-~~l~~~l~Sl~~q~~~--~~eiIvvDd~S~d 46 (240)
T 3bcv_A 3 LIPKVSVIVPIY---NVE-KYLDQCVQALLAQTLS--DIEIILIDDESPD 46 (240)
T ss_dssp CCCSEEEEEEES---SCT-TTHHHHHHHHHTCSSS--SEEEEEEECCCSS
T ss_pred CCCcEEEEEecC---CCH-HHHHHHHHHHHhCcCC--CeEEEEEECCCCc
Confidence 468899999999 665 6788999999999998 5789999999876
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=98.79 E-value=1.5e-08 Score=120.98 Aligned_cols=103 Identities=19% Similarity=0.152 Sum_probs=66.3
Q ss_pred EEEEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCeeecCCC
Q 001071 609 LVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQRFEGID 688 (1165)
Q Consensus 609 LvYvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~F~nid 688 (1165)
+.|+. ++.. -+++|+|..++. ++|+||+.+|+|.++ .|++|.+.+..|.. .+++++|.....+.+.+
T Consensus 432 i~~~~-~~n~-----G~~~a~n~g~~~----a~g~~i~~ld~D~~~-~~~~l~~~~~~~~~--~~~~~~v~~~~~~~~~~ 498 (625)
T 2z86_A 432 VRFIS-QKNK-----GIGSASNTAVRL----CRGFYIGQLDSDDFL-EPDAVELCLDEFRK--DLSLACVYTTNRNIDRE 498 (625)
T ss_dssp EEEEE-ECCC-----CHHHHHHHHHHH----CCSSEEEECCTTCEE-CTTHHHHHHHHHHH--CTTCSEEEEEEEEECTT
T ss_pred EEEEe-CCCC-----CHHHHHHHHHHh----cCCCEEEEECCCccc-ChhHHHHHHHHHHh--CCCeeEEEeeeEEECCC
Confidence 45664 4433 399999999885 589999999999997 79999999988864 27888888877665433
Q ss_pred CCCcccchhHHHHHhhccccccCCCceeccccchhhhhhhc
Q 001071 689 PNDRYANHNTVFFDVAMRALDGLQGPMYVGTGCIFRRTALY 729 (1165)
Q Consensus 689 ~~Dry~n~~~vFfdi~~~glDG~qgp~yvGTGc~fRR~ALy 729 (1165)
..-....... .....+.+...+++|.+.++||+++.
T Consensus 499 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~r~~~~ 534 (625)
T 2z86_A 499 GNLISNGYNW-----PIYSREKLTSAMICHHFRMFTARAWN 534 (625)
T ss_dssp SCEEEECCCC-----SSCCHHHHTTSCCCCSCEEEEHHHHT
T ss_pred CCEeccCccc-----ccCCHHHHhhcccCCceEEEEHHHHH
Confidence 2211000000 00001122344566777777777764
No 10
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=98.33 E-value=7.4e-07 Score=98.84 Aligned_cols=54 Identities=19% Similarity=0.121 Sum_probs=43.5
Q ss_pred CchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCee
Q 001071 624 KKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQR 683 (1165)
Q Consensus 624 ~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ~ 683 (1165)
-|++|+|..++. ++|+||+.+|+|.+..+|++|.+.+..|... +++++|+....
T Consensus 118 G~~~a~n~g~~~----a~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~--~~~~~v~g~~~ 171 (329)
T 3ckj_A 118 GKGEALWRSLAA----SRGDIVVFVDSDLINPHPMFVPWLVGPLLTG--DGVHLVKSFYR 171 (329)
T ss_dssp SHHHHHHHHHHH----CCCSEEEECCTTEESCCTTHHHHHHHHHHSC--SSCCEEEEEEE
T ss_pred CHHHHHHHHHHh----CCCCEEEEECCCCCCcChHHHHHHHHHHHhC--CCccEEEEEec
Confidence 399999998875 5899999999999833689999999987642 67888877433
No 11
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=98.22 E-value=5.9e-06 Score=100.77 Aligned_cols=63 Identities=13% Similarity=0.046 Sum_probs=46.5
Q ss_pred EEEEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEec
Q 001071 609 LVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQF 680 (1165)
Q Consensus 609 LvYvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQf 680 (1165)
+.|+..+ +.| .|||.|..++...-.++++||+.+|.|-++ .|++|.+.+.+|... ++++.|+.
T Consensus 242 I~vI~~~-N~G-----~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~-~pd~L~~ll~~l~~~--~~~~~vg~ 304 (657)
T 4fix_A 242 LSIHDQP-NLG-----GSGGYSRVMYEALKNTDCQQILFMDDDIRL-EPDSILRVLAMHRFA--KAPMLVGG 304 (657)
T ss_dssp EEEEECC-CCH-----HHHHHHHHHHHHHHHCCCSEEEEECSSEEE-CTHHHHHHHHHHHHB--SSCCEEEE
T ss_pred EEEEECC-CCC-----HHHHHHHHHHHHHhcCCCCEEEEECCCCcc-ChhHHHHHHHHHHhC--CCcEEEEe
Confidence 4566433 333 799999887753212378999999999998 699999999999863 56666654
No 12
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=98.15 E-value=2.7e-07 Score=112.86 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=0.0
Q ss_pred EEEEEecCCCCCCcCCchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEec
Q 001071 609 LVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQF 680 (1165)
Q Consensus 609 LvYvSREKRPg~~Hh~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQf 680 (1165)
+.|+..++..| +++|.|..++. .+|+||+.+|+|.++ .|++|.+.+..|.+ .++++...
T Consensus 60 i~~i~~~~n~G-----~~~arN~gi~~----A~gdyI~flD~Dd~~-~p~~l~~l~~~l~~---~d~v~~~~ 118 (729)
T 3l7i_A 60 IRFIDLDENSG-----HAHARNIALEE----VETPYFMFLDADDEL-ASYAITFYLEKFNN---TDGLIAPI 118 (729)
T ss_dssp ------------------------------------------------------------------------
T ss_pred EEEEECCCCCC-----HHHHHHHHHHh----ccCCEEEEECCCCCC-ChhHHHHHHHHhcC---CCEEEEee
Confidence 44555554433 78999998874 589999999999998 79999999999884 55555443
No 13
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=97.11 E-value=0.00054 Score=78.61 Aligned_cols=99 Identities=15% Similarity=0.194 Sum_probs=60.3
Q ss_pred chhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEEEecCe-eec-CCCC-CCcccchh----
Q 001071 625 KAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICYVQFPQ-RFE-GIDP-NDRYANHN---- 697 (1165)
Q Consensus 625 KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vafVQfPQ-~F~-nid~-~Dry~n~~---- 697 (1165)
|++|+|..++. ..|+||+.+|+|....+|++|.+.+..+.+ ++++.+|..-- +.. +... .....+..
T Consensus 167 ~g~A~n~G~~~----A~gd~i~~lDaD~~~~~p~~L~~l~~~l~~--~p~~d~v~G~~~~~~~~~~~~~~~~~g~v~~~~ 240 (387)
T 3f1y_A 167 KGDAMWRALSV----TRGDLVLYIDADTRDFRPQLAYGVLGPVLE--VPGVRFVKAAYRRPFRKGESIEEDGGGRVTELT 240 (387)
T ss_dssp HHHHHHHHTTT----CCSSEEEECCTTCSSCCTHHHHTTHHHHHH--STTCCEEEEEEECC-------CCBCCSHHHHHT
T ss_pred HHHHHHHHHHh----cCCCEEEEEcCCCCcCCHHHHHHHHHHHHH--CCCceEEEEeeccccccccccccccCCchhhhh
Confidence 99999999975 589999999999993379999999998875 25666665521 111 0000 01112211
Q ss_pred -HHHHHhhccccccCCCceeccccchhhhhhhcCC
Q 001071 698 -TVFFDVAMRALDGLQGPMYVGTGCIFRRTALYGF 731 (1165)
Q Consensus 698 -~vFfdi~~~glDG~qgp~yvGTGc~fRR~ALyg~ 731 (1165)
..++....+.+.++.-+ .|...+|||++|..+
T Consensus 241 ~~~l~~~~~~~l~~~~d~--~sG~~a~rR~~l~~i 273 (387)
T 3f1y_A 241 AKPLFNLFYPELAGFVQP--LAGEFVADRELFCSI 273 (387)
T ss_dssp HHHHHHHHCGGGTTCSCT--TCSCEEEEHHHHTTS
T ss_pred HHHHHHHHhHhhcccccc--ccccEEEEHHHHHhC
Confidence 12333334444443333 344567999999864
No 14
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=96.77 E-value=0.00054 Score=75.60 Aligned_cols=53 Identities=13% Similarity=0.000 Sum_probs=39.6
Q ss_pred cchHHHHHHHHhCCcEEEEeecCCccc----------cccCCCCHHHHHHHhHhhhcchhHHH
Q 001071 866 TEDVVTGYRMHNRGWRSVYCVTKRDAF----------RGTAPINLTDRLHQVLRWATGSVEIF 918 (1165)
Q Consensus 866 TEDi~TGlrLh~rGWrSvY~~p~r~af----------~GlAPeTL~~~l~QR~RWA~G~iQIl 918 (1165)
.||+++.+||+.+||+..+.++....+ ....|+.+..+.+||.||+++.+..+
T Consensus 201 ~ED~Dl~~Rl~~~G~~i~~~~~~~~~~~~i~H~~~~~~~~n~~~~~~l~~~~~~~~~~Gl~~~ 263 (287)
T 2fy7_A 201 GEDDDIFNRLVFRGMSISRPNAVVGTTRHIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSL 263 (287)
T ss_dssp CHHHHHHHHHHHTTCCCBCCCTTTCEEEECC---------CCCCCCCHHHHHHHTTTSSGGGC
T ss_pred cchHHHHHHHHHcCCeEEecCcccceeEEEecCCCcccCCCHHHHHHHhhcccEEcCCCcccC
Confidence 499999999999999887332100101 13478999999999999999998766
No 15
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=95.39 E-value=0.011 Score=53.43 Aligned_cols=49 Identities=29% Similarity=0.865 Sum_probs=39.4
Q ss_pred CCCcceeecCCCccccc----ccccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 147 SGLICGMKGCDEKVMQN----KCDCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 147 ~g~~C~i~gcd~~~~~d----~CeC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
....|.||-..... .| ||.|+.-+|+.|+..-.+++...||.|+.+|..
T Consensus 10 ~~~~CpICle~~~~-~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 10 DPVECPLCMEPLEI-DDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCBCTTTCCBCCT-TTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cCCcCCccCccCcc-ccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 34679997664422 22 889999999999998877788999999999976
No 16
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=93.38 E-value=0.1 Score=55.30 Aligned_cols=50 Identities=4% Similarity=-0.009 Sum_probs=40.0
Q ss_pred chhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhc--CCCceEEEe
Q 001071 625 KAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDR--GGDRICYVQ 679 (1165)
Q Consensus 625 KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~--~g~~vafVQ 679 (1165)
.|.|+|..++. ..|+||+.||.|-++ ++++|.+.+-+|... ..++++.|-
T Consensus 62 ~a~a~N~Gi~~----A~g~yl~fln~D~~~-~~~~l~~l~~~~~~~~~~~~~vg~vg 113 (249)
T 2nxv_A 62 GFSWHKQMLPR----CKGRYVIFCHEDVEL-VDRGYDDLVAAIEALEEADPKWLVAG 113 (249)
T ss_dssp TTTHHHHHGGG----CCSSEEEEEETTEEC-SSCCHHHHHHHHHHHHHHCTTEEEEE
T ss_pred HHHHHHHHHHh----cCCCEEEEECCCccc-CccHHHHHHHHHHhcccCCCCeeEEe
Confidence 37899999885 579999999999998 789999999988741 126777663
No 17
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=85.23 E-value=0.37 Score=42.17 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=38.4
Q ss_pred CCCcceeecCCCccccccc--ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 147 SGLICGMKGCDEKVMQNKC--DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 147 ~g~~C~i~gcd~~~~~d~C--eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
..-.|.||.. ++.+|. .|+.-.|+.|.+.-.+.+...||.|+.+...
T Consensus 7 ~~~~C~IC~~---~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLE---LMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSC---CCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccc---cccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 3457888654 456655 8999999999998888888999999999865
No 18
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=81.51 E-value=0.57 Score=43.94 Aligned_cols=46 Identities=11% Similarity=0.068 Sum_probs=37.6
Q ss_pred CCCcceeecCCCccccccc--ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 147 SGLICGMKGCDEKVMQNKC--DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 147 ~g~~C~i~gcd~~~~~d~C--eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
..-.|.||+ .+|.||+ .||.-.||.|-+.-.+ ++..||.|+++...
T Consensus 28 ~~~~CpI~~---~~m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMD---TLMTDPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTC---SBCSSEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCT
T ss_pred HhhCCcCcc---CcccCCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCCh
Confidence 356788863 4788877 8999999999988876 46899999999865
No 19
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=81.02 E-value=0.7 Score=43.16 Aligned_cols=45 Identities=9% Similarity=0.053 Sum_probs=37.1
Q ss_pred CCcceeecCCCccccccc--ccC-CccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 148 GLICGMKGCDEKVMQNKC--DCG-FKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 148 g~~C~i~gcd~~~~~d~C--eC~-f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
.-.|.||+ .+|.||+ .|+ .-.||.|.+.-.++ +..||.|++++..
T Consensus 22 ~~~CpI~~---~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 22 EFLDPIMS---TLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTM 69 (98)
T ss_dssp TTBCTTTC---SBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCT
T ss_pred hcCCcCcc---ccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCCh
Confidence 45788853 4788987 899 99999999888776 5799999999865
No 20
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=79.89 E-value=0.65 Score=49.48 Aligned_cols=48 Identities=19% Similarity=0.172 Sum_probs=38.4
Q ss_pred CCCCcceeecCCCccccccc--ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 146 KSGLICGMKGCDEKVMQNKC--DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 146 ~~g~~C~i~gcd~~~~~d~C--eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
..--.|.||.+ +|.||+ .||.-.||.|-+.-.+.+...||.|+++...
T Consensus 206 ~~~~~c~i~~~---~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFE---LMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCS---BCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCC---HhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 34567888653 578877 8999999999998877766679999999864
No 21
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=79.73 E-value=0.66 Score=48.25 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=37.3
Q ss_pred CCCcceeecCCCccccccc--ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 147 SGLICGMKGCDEKVMQNKC--DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 147 ~g~~C~i~gcd~~~~~d~C--eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
..-.|.||+ .+|.||+ .||.-.||.|-+.-.+.++..||.|++++..
T Consensus 105 ~~f~CPI~~---elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 105 DYLCGKISF---ELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GGGBCTTTC---SBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred HhhcccCcc---ccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 445788864 4688877 9999999999988876543479999999865
No 22
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=78.95 E-value=0.71 Score=41.83 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=37.0
Q ss_pred CCCcceeecCCCccccccc--ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 147 SGLICGMKGCDEKVMQNKC--DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 147 ~g~~C~i~gcd~~~~~d~C--eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
..-.|.||+ .+|.||+ .||.-.||.|-+.-.+. +..||.|++++..
T Consensus 13 ~~~~CpI~~---~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMD---TLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTC---SBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred hheECcccC---chhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCCh
Confidence 345788854 4688877 89999999999888764 6899999999865
No 23
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=74.63 E-value=1.3 Score=44.49 Aligned_cols=48 Identities=21% Similarity=0.546 Sum_probs=36.5
Q ss_pred CCcceeecCCCccccccc-ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 148 GLICGMKGCDEKVMQNKC-DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 148 g~~C~i~gcd~~~~~d~C-eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
...|.||-+...... -+ .|+--.|+.|.+.-.+.+...||-|+.++..
T Consensus 54 ~~~C~IC~~~~~~p~-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKNTM-TTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSSEE-EETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhCcC-EeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 347999755443111 23 8999999999999888888999999999853
No 24
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.35 E-value=2.3 Score=38.47 Aligned_cols=52 Identities=19% Similarity=0.392 Sum_probs=38.0
Q ss_pred CCCCCcceeecCCCccc---ccccccC---CccchhhhhhhhcC-CCCCCCCCCCcccc
Q 001071 145 VKSGLICGMKGCDEKVM---QNKCDCG---FKICRECYLECAGN-GGGRCPGCKEPYKD 196 (1165)
Q Consensus 145 ~~~g~~C~i~gcd~~~~---~d~CeC~---f~iCr~Cy~~~~k~-g~~~Cp~Ck~~yk~ 196 (1165)
...+..|.||-++.... ..||.|. --+.+.|.+.=.+. +...||-||.+|..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 34567899987765422 2289885 78999999766554 44799999999965
No 25
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=66.42 E-value=2.8 Score=40.02 Aligned_cols=45 Identities=16% Similarity=0.309 Sum_probs=35.1
Q ss_pred CcceeecCCCccccccc--ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 149 LICGMKGCDEKVMQNKC--DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 149 ~~C~i~gcd~~~~~d~C--eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
-.|.||-+.. .+|. .|+--.|+.|...-.+.+...||.|++++..
T Consensus 53 ~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELV---FRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBC---SSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHH---cCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4688876544 3433 7899999999988877666799999999965
No 26
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=65.55 E-value=4.6 Score=45.76 Aligned_cols=44 Identities=18% Similarity=0.190 Sum_probs=37.5
Q ss_pred CCcccEEEeCCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEcCCCCch
Q 001071 388 LPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGAL 436 (1165)
Q Consensus 388 LP~VDVFV~TaDP~kEPp~vt~nTVLSilA~DYP~~Kls~YvsDDG~s~ 436 (1165)
|+-+=|.|.|+ |-| . +..++-|++.+..+.++.-++|+|||...
T Consensus 1 ~~~~pViI~~y---NRp-~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~ 44 (343)
T 1fo8_A 1 LAVIPILVIAC---DRS-T-VRRCLDKLLHYRPSAELFPIIVSQDCGHE 44 (343)
T ss_dssp CCCCCEEEEES---SCT-T-HHHHHHHHHHHCSCTTTSCEEEEECTTCH
T ss_pred CCcccEEEEEC---CcH-H-HHHHHHHHHhcCCCcCCcEEEEEECCCCH
Confidence 34567889999 888 5 99999999999988888889999999865
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.57 E-value=3.7 Score=34.64 Aligned_cols=47 Identities=17% Similarity=0.459 Sum_probs=36.5
Q ss_pred CCCcceeecCCCccccccc--ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 147 SGLICGMKGCDEKVMQNKC--DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 147 ~g~~C~i~gcd~~~~~d~C--eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
....|.||.+.. .+|. .|+--.|+.|.+.-.+.+...||-|+.+.+.
T Consensus 14 ~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVL---CSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEE---SSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHh---cCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 456798976443 3433 7888899999988887777899999999876
No 28
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.09 E-value=3.4 Score=36.52 Aligned_cols=50 Identities=28% Similarity=0.460 Sum_probs=36.7
Q ss_pred CCCcceeecCCCccccc-cc--ccCCccchhhhhhhhcC--CCCCCCCCCCcccc
Q 001071 147 SGLICGMKGCDEKVMQN-KC--DCGFKICRECYLECAGN--GGGRCPGCKEPYKD 196 (1165)
Q Consensus 147 ~g~~C~i~gcd~~~~~d-~C--eC~f~iCr~Cy~~~~k~--g~~~Cp~Ck~~yk~ 196 (1165)
....|.||-........ |. .|+-..|+.|...-.+. +...||-|+.+++.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 34679997666543222 33 78999999999877554 36899999999876
No 29
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=62.63 E-value=3.4 Score=41.24 Aligned_cols=45 Identities=16% Similarity=0.453 Sum_probs=35.5
Q ss_pred CcceeecCCCccccccc--ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 149 LICGMKGCDEKVMQNKC--DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 149 ~~C~i~gcd~~~~~d~C--eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
..|.||-+. ..+|. .|+--.|+.|...-.+.+...||-|+.++..
T Consensus 79 ~~C~IC~~~---~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 79 FMCVCCQEL---VYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp TBCTTTSSB---CSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CEeecCChh---hcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 578886543 34544 8888889999988888776799999999976
No 30
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.05 E-value=4.6 Score=34.49 Aligned_cols=47 Identities=26% Similarity=0.540 Sum_probs=35.8
Q ss_pred CCCcceeecCCCccccccc--ccCCccchhhhhhhhc--CCCCCCCCCCCcccc
Q 001071 147 SGLICGMKGCDEKVMQNKC--DCGFKICRECYLECAG--NGGGRCPGCKEPYKD 196 (1165)
Q Consensus 147 ~g~~C~i~gcd~~~~~d~C--eC~f~iCr~Cy~~~~k--~g~~~Cp~Ck~~yk~ 196 (1165)
....|.||-.... +|. .|+-..|+.|...-.+ .+...||-|+.++..
T Consensus 19 ~~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 19 EEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCBCTTTCSBCS---SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred cCCEeccCCcccC---CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 4567999765443 332 8899999999987766 356799999999876
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.99 E-value=5 Score=34.89 Aligned_cols=47 Identities=23% Similarity=0.576 Sum_probs=34.9
Q ss_pred CCCcceeecCCCccccccc--ccCCccchhhhhhhhcC-----CCCCCCCCCCcccc
Q 001071 147 SGLICGMKGCDEKVMQNKC--DCGFKICRECYLECAGN-----GGGRCPGCKEPYKD 196 (1165)
Q Consensus 147 ~g~~C~i~gcd~~~~~d~C--eC~f~iCr~Cy~~~~k~-----g~~~Cp~Ck~~yk~ 196 (1165)
....|.||-.... +|. .|+-..|+.|...-.+. +...||-|+++...
T Consensus 18 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLT---QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCS---SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccC---CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 3567999766543 333 78889999999765443 57899999999865
No 32
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=61.78 E-value=3.1 Score=39.10 Aligned_cols=45 Identities=18% Similarity=0.465 Sum_probs=35.6
Q ss_pred CCcceeecCCCccccccc--ccCCccchhhhhhhhcCCCCCCCCCCCccc
Q 001071 148 GLICGMKGCDEKVMQNKC--DCGFKICRECYLECAGNGGGRCPGCKEPYK 195 (1165)
Q Consensus 148 g~~C~i~gcd~~~~~d~C--eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk 195 (1165)
.-.|.||.... .+|. .|+--.|+.|...-.+.+...||.|+.++.
T Consensus 15 ~~~C~iC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEIL---VEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBC---SSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCccCCccc---CceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 45688876543 3443 899999999998887777889999999985
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=60.93 E-value=4.8 Score=33.88 Aligned_cols=49 Identities=22% Similarity=0.461 Sum_probs=34.7
Q ss_pred CCcceeecCC-Cccccc-cc--ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 148 GLICGMKGCD-EKVMQN-KC--DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 148 g~~C~i~gcd-~~~~~d-~C--eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
...|.||-.+ ..-... +. .|+--.|+.|.+.-...+...||.|+.++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4679997652 111111 12 7899999999987766677899999999976
No 34
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=58.99 E-value=9.7 Score=32.18 Aligned_cols=51 Identities=12% Similarity=0.164 Sum_probs=35.9
Q ss_pred CCCCCcceeecCCCcccccc--cccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 145 VKSGLICGMKGCDEKVMQNK--CDCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 145 ~~~g~~C~i~gcd~~~~~d~--CeC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
......|.||-.....+.++ -.|+-..|+.|...-.+.. ..||-|+.+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-KKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-CCCcCcCccccC
Confidence 44567899977665443332 2688888999997655543 579999998865
No 35
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=58.72 E-value=5.5 Score=34.63 Aligned_cols=49 Identities=29% Similarity=0.554 Sum_probs=34.8
Q ss_pred CCCcceeecCCCcccccccccCCccchhhhhhhhcC-----CCCCCCCCCCcccc
Q 001071 147 SGLICGMKGCDEKVMQNKCDCGFKICRECYLECAGN-----GGGRCPGCKEPYKD 196 (1165)
Q Consensus 147 ~g~~C~i~gcd~~~~~d~CeC~f~iCr~Cy~~~~k~-----g~~~Cp~Ck~~yk~ 196 (1165)
....|.||-....... ...|+-..|+.|...-.+. +...||-|+.++..
T Consensus 18 ~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKEPV-SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSSCE-ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCcce-eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 3467999765532111 2278889999999876554 47899999999865
No 36
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=56.77 E-value=6 Score=31.81 Aligned_cols=48 Identities=29% Similarity=0.516 Sum_probs=34.6
Q ss_pred CCCCcceeecCCCccccc-c-c-ccCCccchhhhhhhhcCCCCCCCCCCCcc
Q 001071 146 KSGLICGMKGCDEKVMQN-K-C-DCGFKICRECYLECAGNGGGRCPGCKEPY 194 (1165)
Q Consensus 146 ~~g~~C~i~gcd~~~~~d-~-C-eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~y 194 (1165)
.....|.||-.+.....+ + . .|+-..|+.|...-.+.. ..||-|+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~ 53 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPS 53 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSS
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcC
Confidence 345789997766543222 2 2 688899999998766655 8999999875
No 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=55.03 E-value=4.4 Score=36.34 Aligned_cols=46 Identities=24% Similarity=0.545 Sum_probs=34.2
Q ss_pred CCCcceeecCCCccccccc--c-cCCccchhhhhhhhc-CCCCCCCCCCCccc
Q 001071 147 SGLICGMKGCDEKVMQNKC--D-CGFKICRECYLECAG-NGGGRCPGCKEPYK 195 (1165)
Q Consensus 147 ~g~~C~i~gcd~~~~~d~C--e-C~f~iCr~Cy~~~~k-~g~~~Cp~Ck~~yk 195 (1165)
..-.|.||.+ ++.+|. . |+--.|+.|.+.-.+ .+...||.|+.++.
T Consensus 12 ~~~~C~IC~~---~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKD---IMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTE---ECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCCh---hhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3467888664 345654 5 999999999976654 45579999999973
No 38
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=54.42 E-value=8.4 Score=35.54 Aligned_cols=46 Identities=24% Similarity=0.483 Sum_probs=34.1
Q ss_pred CCcceeecCCCccccccc--ccCCccchhhhhhhhcC--CCCCCCCCCCcccc
Q 001071 148 GLICGMKGCDEKVMQNKC--DCGFKICRECYLECAGN--GGGRCPGCKEPYKD 196 (1165)
Q Consensus 148 g~~C~i~gcd~~~~~d~C--eC~f~iCr~Cy~~~~k~--g~~~Cp~Ck~~yk~ 196 (1165)
...|.||-... .+|. .|+--.|+.|...-.+. +...||-|+.+...
T Consensus 21 ~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELI---KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCC---SSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhh---cCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 35799976543 3433 78999999999877654 34689999999865
No 39
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=54.11 E-value=6.6 Score=37.40 Aligned_cols=29 Identities=28% Similarity=0.802 Sum_probs=24.9
Q ss_pred CCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 168 GFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 168 ~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
.=-.|-+|++.-.+++.+.||.|+.+..+
T Consensus 21 kHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 21 KHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp CCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred cccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 33569999988888999999999999976
No 40
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=53.32 E-value=5.2 Score=46.24 Aligned_cols=46 Identities=22% Similarity=0.560 Sum_probs=33.4
Q ss_pred CCcceeecCCCccccccc--ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 148 GLICGMKGCDEKVMQNKC--DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 148 g~~C~i~gcd~~~~~d~C--eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
...|.||-+.. .+|. .|+=..|..|...-.+.....||-|+.+...
T Consensus 332 ~~~C~ICle~~---~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSB---CCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCC---CCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 46899975544 3322 5666669999976655467899999999865
No 41
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=52.82 E-value=5.5 Score=34.43 Aligned_cols=47 Identities=26% Similarity=0.545 Sum_probs=34.7
Q ss_pred CCCcceeecCCCccccccc--ccCCccchhhhhhhhcC------CCCCCCCCCCcccc
Q 001071 147 SGLICGMKGCDEKVMQNKC--DCGFKICRECYLECAGN------GGGRCPGCKEPYKD 196 (1165)
Q Consensus 147 ~g~~C~i~gcd~~~~~d~C--eC~f~iCr~Cy~~~~k~------g~~~Cp~Ck~~yk~ 196 (1165)
....|.||-... .+|. .|+--.|+.|...-.+. +...||-|+.++..
T Consensus 11 ~~~~C~IC~~~~---~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELL---TEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEEC---SSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCccc---CCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 356799976543 3333 78999999999865554 36899999999865
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=52.64 E-value=4.3 Score=38.45 Aligned_cols=46 Identities=20% Similarity=0.532 Sum_probs=35.5
Q ss_pred CCcceeecCCCccccccc--ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 148 GLICGMKGCDEKVMQNKC--DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 148 g~~C~i~gcd~~~~~d~C--eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
.-.|.||.... .+|. .|+--.|+.|...-.+.....||.|+.+...
T Consensus 18 ~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 18 KYECPICLMAL---REAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCcCChhh---cCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 35788877544 3433 7999999999988777666699999999865
No 43
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=51.02 E-value=7.8 Score=33.60 Aligned_cols=47 Identities=23% Similarity=0.488 Sum_probs=34.6
Q ss_pred CCCcceeecCCCccccccc--c-cCCccchhhhhhhhc-CCCCCCCCCCCcccc
Q 001071 147 SGLICGMKGCDEKVMQNKC--D-CGFKICRECYLECAG-NGGGRCPGCKEPYKD 196 (1165)
Q Consensus 147 ~g~~C~i~gcd~~~~~d~C--e-C~f~iCr~Cy~~~~k-~g~~~Cp~Ck~~yk~ 196 (1165)
....|.||-.. ..+|. . |+--.|+.|...-.+ .+...||.|+.++.+
T Consensus 14 ~~~~C~IC~~~---~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDI---MTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCC---CTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCcCCChH---HhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 45679997443 34544 5 999999999987765 345799999998654
No 44
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=50.49 E-value=11 Score=30.24 Aligned_cols=47 Identities=21% Similarity=0.436 Sum_probs=33.7
Q ss_pred CCCcceeecCCCcccccc--c-ccCCccchhhhhhhhcCCCCCCCCCCCcc
Q 001071 147 SGLICGMKGCDEKVMQNK--C-DCGFKICRECYLECAGNGGGRCPGCKEPY 194 (1165)
Q Consensus 147 ~g~~C~i~gcd~~~~~d~--C-eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~y 194 (1165)
....|.||-.+...+..+ . .|+-..|+.|...-.+. +..||-|+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEe
Confidence 456799977766544332 2 48888999999665554 57899999875
No 45
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=49.50 E-value=12 Score=32.51 Aligned_cols=51 Identities=22% Similarity=0.447 Sum_probs=36.7
Q ss_pred CCCCCcceeecCCCccccc--ccccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 145 VKSGLICGMKGCDEKVMQN--KCDCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 145 ~~~g~~C~i~gcd~~~~~d--~CeC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
......|.||-+....... .-.|+-..|+.|...-.+.. ..||-|+.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 64 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-DSCPVCRKSLTG 64 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-CSCTTTCCCCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-CcCcCcCCccCC
Confidence 3456789997776543333 12688889999997665543 799999999865
No 46
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=49.30 E-value=12 Score=35.32 Aligned_cols=46 Identities=24% Similarity=0.416 Sum_probs=32.7
Q ss_pred CCcceeecCCCcccccccccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 148 GLICGMKGCDEKVMQNKCDCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 148 g~~C~i~gcd~~~~~d~CeC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
.-.|.||............|+--.|+.|...-.+ ..||.|+.++..
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSC
T ss_pred CCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCcc
Confidence 4568887544321111237999999999977665 789999999854
No 47
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=49.00 E-value=8 Score=37.65 Aligned_cols=44 Identities=23% Similarity=0.440 Sum_probs=32.7
Q ss_pred CcceeecCCCccccccc--ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 149 LICGMKGCDEKVMQNKC--DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 149 ~~C~i~gcd~~~~~d~C--eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
-.|.||-+.. .+|. .|+--.|+.|...-.+. ...||-|+.+.+.
T Consensus 54 ~~C~iC~~~~---~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBC---SSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCC
T ss_pred CCCcccCccc---CCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCC
Confidence 3699976543 4544 78999999998765554 4789999999864
No 48
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=47.88 E-value=8.6 Score=35.67 Aligned_cols=47 Identities=19% Similarity=0.444 Sum_probs=34.2
Q ss_pred CCcceeecCCCccccccc-ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 148 GLICGMKGCDEKVMQNKC-DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 148 g~~C~i~gcd~~~~~d~C-eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
.-.|.||.+...... -. .|+--.|+.|...-.+.. ..||.|+.+...
T Consensus 15 ~~~C~IC~~~~~~p~-~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFIDAT-TIIECLHSFCKTCIVRYLETS-KYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSSEE-EETTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCS
T ss_pred cCCCccCChHHhCcC-EeCCCCChhhHHHHHHHHHhC-CcCcCCCccccc
Confidence 457889755442111 23 788889999998776655 899999999865
No 49
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.70 E-value=6.3 Score=33.01 Aligned_cols=50 Identities=18% Similarity=0.519 Sum_probs=35.8
Q ss_pred CCCCcceeecCCCcccc---c-cc--ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 146 KSGLICGMKGCDEKVMQ---N-KC--DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 146 ~~g~~C~i~gcd~~~~~---d-~C--eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
.....|.||-....... + +. .|+-..|+.|.+.-.+. ...||-|+.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 34577999777654321 1 22 78999999999766554 5799999998754
No 50
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=46.73 E-value=9.7 Score=34.67 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=33.5
Q ss_pred CCcceeecCCCcccccc--c-ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 148 GLICGMKGCDEKVMQNK--C-DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 148 g~~C~i~gcd~~~~~d~--C-eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
.-.|.||.... .+| . .|+--.|+.|...-.+. ...||.|+.+...
T Consensus 22 ~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYF---NIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBC---SSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred CCCcccCChhh---CCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCCh
Confidence 35788976544 333 3 78999999999776664 4799999999865
No 51
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.61 E-value=10 Score=32.57 Aligned_cols=46 Identities=17% Similarity=0.469 Sum_probs=34.0
Q ss_pred CCCcceeecCCCcccccc--c-ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 147 SGLICGMKGCDEKVMQNK--C-DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 147 ~g~~C~i~gcd~~~~~d~--C-eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
....|.||-... .+| . .|+--.|+.|...-.+. ...||-|+.+++.
T Consensus 14 ~~~~C~IC~~~~---~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYL---IDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCC---SSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCS
T ss_pred CCCCCCCCChHH---HCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCc
Confidence 356798965443 332 2 68888899999877655 5899999999976
No 52
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=44.82 E-value=5.5 Score=32.86 Aligned_cols=48 Identities=19% Similarity=0.520 Sum_probs=35.0
Q ss_pred CCcceeecCCCcccc---c-cc--ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 148 GLICGMKGCDEKVMQ---N-KC--DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 148 g~~C~i~gcd~~~~~---d-~C--eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
...|.||-+...... + +. .|+-..|+.|.+.-.+. +..||-|+.++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 457999776654321 1 22 88999999999766554 5799999999865
No 53
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.68 E-value=16 Score=31.25 Aligned_cols=48 Identities=17% Similarity=0.303 Sum_probs=35.3
Q ss_pred CCCCCcceeecCCCccccccc--ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 145 VKSGLICGMKGCDEKVMQNKC--DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 145 ~~~g~~C~i~gcd~~~~~d~C--eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
......|.||-... .+|. .|+-..|+.|...-.+.. ..||-|+.++..
T Consensus 12 ~~~~~~C~IC~~~~---~~~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTC---VHPVSLPCKHVFCYLCVKGASWLG-KRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBC---SSEEEETTTEEEEHHHHHHCTTCS-SBCSSSCCBCCH
T ss_pred CCCCCCCccCCccc---CCCEEccCCCHHHHHHHHHHHHCC-CcCcCcCchhCH
Confidence 45567899976554 3322 688889999997655544 799999999865
No 54
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=42.92 E-value=14 Score=31.53 Aligned_cols=50 Identities=16% Similarity=0.305 Sum_probs=34.6
Q ss_pred CCCcceeecCCCccc-ccccccCC---ccchhhhhhhhc-CCCCCCCCCCCcccc
Q 001071 147 SGLICGMKGCDEKVM-QNKCDCGF---KICRECYLECAG-NGGGRCPGCKEPYKD 196 (1165)
Q Consensus 147 ~g~~C~i~gcd~~~~-~d~CeC~f---~iCr~Cy~~~~k-~g~~~Cp~Ck~~yk~ 196 (1165)
.+..|.||-++.+-. ..||.|.= .+=+.|.+-=.+ .++..||.||.+|..
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 456899976553311 23998865 566788876655 367899999999963
No 55
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=42.72 E-value=3.3 Score=42.04 Aligned_cols=47 Identities=19% Similarity=0.496 Sum_probs=36.9
Q ss_pred CCCCcceeecCCCccccc---cc-ccCCccchhhhhhhhcCCCCCCCCCCC
Q 001071 146 KSGLICGMKGCDEKVMQN---KC-DCGFKICRECYLECAGNGGGRCPGCKE 192 (1165)
Q Consensus 146 ~~g~~C~i~gcd~~~~~d---~C-eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~ 192 (1165)
.+...|.+|+..-+.-.+ .| .|...||+.|-.+-+++..=+|--|-+
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccccccCCCCcEeeHHHHH
Confidence 367899999888665444 99 999999999998777777667766644
No 56
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=42.44 E-value=8.3 Score=36.15 Aligned_cols=46 Identities=26% Similarity=0.620 Sum_probs=35.8
Q ss_pred CCcceeecCCCccccccc--ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 148 GLICGMKGCDEKVMQNKC--DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 148 g~~C~i~gcd~~~~~d~C--eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
.-.|.||.... .+|. .|+--.|+.|...-.+.+...||-|+.++..
T Consensus 23 ~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHIL---ADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHh---cCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 46799965443 4433 7899999999988877767899999999865
No 57
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=41.56 E-value=11 Score=34.74 Aligned_cols=48 Identities=19% Similarity=0.427 Sum_probs=35.6
Q ss_pred CCcceeecCCCccccccc-ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 148 GLICGMKGCDEKVMQNKC-DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 148 g~~C~i~gcd~~~~~d~C-eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
.-.|.||-+...... -| .|+--.|+.|...-.+.....||.|+.++..
T Consensus 22 ~~~C~IC~~~~~~p~-~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRDAR-LCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSSEE-ECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCccccCcc-ccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 356888665543111 34 8999999999987777666799999999865
No 58
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.99 E-value=18 Score=31.63 Aligned_cols=45 Identities=27% Similarity=0.435 Sum_probs=33.8
Q ss_pred CCCcceeecCCCccccccc--ccCCccchhhhhhhhcCCCCCCCCCCCccc
Q 001071 147 SGLICGMKGCDEKVMQNKC--DCGFKICRECYLECAGNGGGRCPGCKEPYK 195 (1165)
Q Consensus 147 ~g~~C~i~gcd~~~~~d~C--eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk 195 (1165)
....|.||-... .+|. .|+--.|+.|...-.+. ...||-|+.+..
T Consensus 14 ~~~~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAF---QNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBC---CSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred CCCCCcCCCchh---cCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence 456799975554 3433 78888899999777654 578999999985
No 59
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.49 E-value=14 Score=31.55 Aligned_cols=49 Identities=22% Similarity=0.429 Sum_probs=35.2
Q ss_pred CCCcceeecCCCccccc--ccccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 147 SGLICGMKGCDEKVMQN--KCDCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 147 ~g~~C~i~gcd~~~~~d--~CeC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
....|.||-.+...... ...|+-..|+.|...-.+.. ..||-|+.+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-KVCPLCNMPVLQ 64 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-SBCTTTCCBCSS
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-CcCCCcCccccc
Confidence 45689997776543332 22688889999997665543 589999998865
No 60
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=39.16 E-value=20 Score=31.40 Aligned_cols=53 Identities=25% Similarity=0.602 Sum_probs=37.5
Q ss_pred ccCCCCCCCCCcceeecCCCccccccc-ccCCccchhhhhhh---hcCCCCCCCCCCCc
Q 001071 139 FEQTEPVKSGLICGMKGCDEKVMQNKC-DCGFKICRECYLEC---AGNGGGRCPGCKEP 193 (1165)
Q Consensus 139 ~~~~~~~~~g~~C~i~gcd~~~~~d~C-eC~f~iCr~Cy~~~---~k~g~~~Cp~Ck~~ 193 (1165)
+|.+.....+..|.|||.++++. -| .|.-..=-.|..-. .-+|.=.|+.|+..
T Consensus 3 ~E~~~~~~~~~~C~vC~~~~~ll--~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 3 MEGQQNLAPGARCGVCGDGTDVL--RCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTTTCCCTTCCCTTTSCCTTCE--ECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred cccccCCCCCCCcCCCCCCCeEE--ECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 35555566778899998765433 57 78777778888543 33677899999753
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=38.57 E-value=9.7 Score=38.13 Aligned_cols=46 Identities=20% Similarity=0.528 Sum_probs=35.9
Q ss_pred CCcceeecCCCcccccc--cccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 148 GLICGMKGCDEKVMQNK--CDCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 148 g~~C~i~gcd~~~~~d~--CeC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
.-.|.||.... .+| +.|+--.|+.|.+.-.+.+...||.|+.+...
T Consensus 18 ~~~C~IC~~~~---~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 18 KYECPICLMAL---REAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCChhh---cCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 35788876543 342 48999999999998877766799999998865
No 62
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=38.29 E-value=19 Score=30.12 Aligned_cols=48 Identities=21% Similarity=0.380 Sum_probs=33.6
Q ss_pred CCCcceeecCCCccccccc-ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 147 SGLICGMKGCDEKVMQNKC-DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 147 ~g~~C~i~gcd~~~~~d~C-eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
.+..|.||........ .. .|+-..|+.|...-.+. +..||-|+.+...
T Consensus 4 ~~~~C~IC~~~~~~~~-~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYS-MALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCE-EETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCc-EecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 4568999776653211 12 67888899999765543 3799999999864
No 63
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=36.38 E-value=26 Score=32.49 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=35.0
Q ss_pred CCcceeecCCCcccc-----------c----c-c-ccCCccchhhhhhhhc----CCCCCCCCCCCcccc
Q 001071 148 GLICGMKGCDEKVMQ-----------N----K-C-DCGFKICRECYLECAG----NGGGRCPGCKEPYKD 196 (1165)
Q Consensus 148 g~~C~i~gcd~~~~~-----------d----~-C-eC~f~iCr~Cy~~~~k----~g~~~Cp~Ck~~yk~ 196 (1165)
...|.||-++..... + . . .|+=..|+.|...-.+ .....||-|++.|..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 458999866653321 0 1 2 6888999999976554 456799999999965
No 64
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.08 E-value=16 Score=31.47 Aligned_cols=51 Identities=18% Similarity=0.369 Sum_probs=35.7
Q ss_pred CCCCCcceeecCCCccccc-cc-ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 145 VKSGLICGMKGCDEKVMQN-KC-DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 145 ~~~g~~C~i~gcd~~~~~d-~C-eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
......|.||-.+...... .. .|+-..|+.|...-.+. +..||-|+.++..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 3456789997766544333 22 57778999999766554 3689999988754
No 65
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=35.18 E-value=53 Score=37.81 Aligned_cols=52 Identities=15% Similarity=-0.036 Sum_probs=36.4
Q ss_pred CchhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhhcCCCceEE
Q 001071 624 KKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLDRGGDRICY 677 (1165)
Q Consensus 624 ~KAGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D~~g~~vaf 677 (1165)
-|.+|||+.++..-...+|++|+.+|||-.-.+|+.+.+.+..+.+ |-++.+
T Consensus 75 GkG~Al~~G~~~Al~~a~gd~vv~mDADlq~~~P~~i~~Ll~~l~~--g~D~V~ 126 (397)
T 2bo4_A 75 GKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADF--GYGLVR 126 (397)
T ss_dssp SHHHHHHHHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHHT--TCSEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHHHHc--CCCEEE
Confidence 4999999988221002589999999999853368999998876643 344443
No 66
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.87 E-value=13 Score=34.03 Aligned_cols=45 Identities=18% Similarity=0.507 Sum_probs=33.8
Q ss_pred CCcceeecCCCccccccc---ccCCccchhhhhhhhcC-----CCCCCCC--CCCc-cc
Q 001071 148 GLICGMKGCDEKVMQNKC---DCGFKICRECYLECAGN-----GGGRCPG--CKEP-YK 195 (1165)
Q Consensus 148 g~~C~i~gcd~~~~~d~C---eC~f~iCr~Cy~~~~k~-----g~~~Cp~--Ck~~-yk 195 (1165)
.-+|.||+ .+|.||+ .|+.-.||.|-+.-.++ +...||. |+.. ..
T Consensus 7 ~~~CPI~~---~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 7 GFTCPITK---EEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp CCBCTTTC---SBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred EeECcCcC---chhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 35688865 5678876 49999999998777554 3468999 8876 43
No 67
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=33.24 E-value=14 Score=36.58 Aligned_cols=35 Identities=23% Similarity=0.488 Sum_probs=27.4
Q ss_pred CCCCCcceeecCCCccccc---cc-ccCCccchhhhhhh
Q 001071 145 VKSGLICGMKGCDEKVMQN---KC-DCGFKICRECYLEC 179 (1165)
Q Consensus 145 ~~~g~~C~i~gcd~~~~~d---~C-eC~f~iCr~Cy~~~ 179 (1165)
+.+...|.+|+..-+...+ .| +|...||+.|-.+.
T Consensus 52 ~~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 52 GDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp SCSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC
T ss_pred cCCCccccccCCCcccccCCCCCCCCCCcccccccCCcc
Confidence 4567889998887764333 99 99999999998654
No 68
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=31.60 E-value=18 Score=34.94 Aligned_cols=31 Identities=23% Similarity=0.534 Sum_probs=23.6
Q ss_pred ccCCccchhhhhhhhc------CCCCCCCCCCCcccc
Q 001071 166 DCGFKICRECYLECAG------NGGGRCPGCKEPYKD 196 (1165)
Q Consensus 166 eC~f~iCr~Cy~~~~k------~g~~~Cp~Ck~~yk~ 196 (1165)
+|.+++|..|-..... =+-.+|-.||..|..
T Consensus 2 ~~~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~~~~ 38 (111)
T 1d4u_A 2 EFDYVICEECGKEFMDSYLMDHFDLPTCDDCRDADDK 38 (111)
T ss_dssp CCCCEECTTTCCEESCSSSTTTTSCCCCTTTCSSSSS
T ss_pred CCCCCccccCCChhhHHHHHHhCCeeechhhcccccc
Confidence 5889999999765532 466899999998744
No 69
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=31.15 E-value=33 Score=36.91 Aligned_cols=48 Identities=27% Similarity=0.764 Sum_probs=37.7
Q ss_pred CCCcceeecCCCccccc-cc-ccCCccchhhhhhhhc-CCCCCCCCCCCcccc
Q 001071 147 SGLICGMKGCDEKVMQN-KC-DCGFKICRECYLECAG-NGGGRCPGCKEPYKD 196 (1165)
Q Consensus 147 ~g~~C~i~gcd~~~~~d-~C-eC~f~iCr~Cy~~~~k-~g~~~Cp~Ck~~yk~ 196 (1165)
.-..|++ |..-+..+ -| +|+-..=+.|+.--.+ .++..||.|+++...
T Consensus 179 ~i~~C~i--C~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNI--CHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTT--TCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcc--hhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 3678988 77767766 89 8999999999976644 456799999998755
No 70
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.02 E-value=24 Score=32.10 Aligned_cols=39 Identities=18% Similarity=0.443 Sum_probs=29.5
Q ss_pred CCCCCCCcceeecCCCccccc---cc-ccCCccchhhhhhhhc
Q 001071 143 EPVKSGLICGMKGCDEKVMQN---KC-DCGFKICRECYLECAG 181 (1165)
Q Consensus 143 ~~~~~g~~C~i~gcd~~~~~d---~C-eC~f~iCr~Cy~~~~k 181 (1165)
|-+-+...|..|+-.-+...+ +| .|...||+.|-.+..+
T Consensus 20 s~~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~~~ 62 (76)
T 2csz_A 20 SQHYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQESN 62 (76)
T ss_dssp CTTCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEECST
T ss_pred CcCCCccchhhhCccccccccCCCcCcccChhhcccccccCCC
Confidence 335677899997777665444 99 9999999999876533
No 71
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=30.04 E-value=38 Score=27.77 Aligned_cols=42 Identities=26% Similarity=0.567 Sum_probs=30.5
Q ss_pred CCcceeecCCCccccccc--ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 148 GLICGMKGCDEKVMQNKC--DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 148 g~~C~i~gcd~~~~~d~C--eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
.-.|.||...-. +|- .|+--.|+.|... ....||-|+.+...
T Consensus 6 ~~~C~IC~~~~~---~p~~l~CgH~fC~~Ci~~----~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 6 FLRCQQCQAEAK---CPKLLPCLHTLCSGCLEA----SGMQCPICQAPWPL 49 (56)
T ss_dssp CSSCSSSCSSCB---CCSCSTTSCCSBTTTCSS----SSSSCSSCCSSSSC
T ss_pred CCCceEeCCccC---CeEEcCCCCcccHHHHcc----CCCCCCcCCcEeec
Confidence 456888765443 333 6787889999854 56789999999865
No 72
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=30.01 E-value=19 Score=32.51 Aligned_cols=49 Identities=14% Similarity=0.300 Sum_probs=34.4
Q ss_pred CCCCcceeecCCCcccccc--cccCCccchhhhhhhhcCCCCCCCCCCCccc
Q 001071 146 KSGLICGMKGCDEKVMQNK--CDCGFKICRECYLECAGNGGGRCPGCKEPYK 195 (1165)
Q Consensus 146 ~~g~~C~i~gcd~~~~~d~--CeC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk 195 (1165)
.....|.||-.+...+..+ ..|+-..|+.|...-.+ .+..||-|+.+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ-KSGTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHT-TTCBCTTTCCBSS
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHH-cCCcCcCcCccCC
Confidence 3456799977665543332 15888899999866554 3579999998764
No 73
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=29.40 E-value=76 Score=33.47 Aligned_cols=43 Identities=16% Similarity=0.078 Sum_probs=29.1
Q ss_pred hhhhHHHHhhccccCCCCEEEeecCCCcCCchHHHHHHHHHhhh
Q 001071 626 AGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLALREGMCFMLD 669 (1165)
Q Consensus 626 AGAlNallRvSav~sngpfIlnlDcD~y~nns~~Lr~amcff~D 669 (1165)
++-+|+|-.+... .+.++|+++|||+=.-+++.+++.+-.+.+
T Consensus 85 ~sv~~gl~~~~~~-~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~ 127 (231)
T 3q80_A 85 DTVNLALTVLSGT-AEPEFVLVHDAARALTPPALVARVVEALRD 127 (231)
T ss_dssp HHHHHHHGGGC----CCSEEEECCTTCTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhc-CCCCEEEEEcCCcCCCCHHHHHHHHHHHhh
Confidence 3444665433210 125899999999966689999999887764
No 74
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=28.37 E-value=22 Score=40.24 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=27.9
Q ss_pred CCCCCCCcceeecCCC-ccccc--cc-ccCCccchhhhh
Q 001071 143 EPVKSGLICGMKGCDE-KVMQN--KC-DCGFKICRECYL 177 (1165)
Q Consensus 143 ~~~~~g~~C~i~gcd~-~~~~d--~C-eC~f~iCr~Cy~ 177 (1165)
|+......|..|+.-. ++..- -| .|++.+|+.|..
T Consensus 352 ~~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 352 FSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLG 390 (406)
T ss_dssp ECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGG
T ss_pred ccCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhh
Confidence 4567789999988876 34433 89 999999999994
No 75
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=25.89 E-value=27 Score=33.55 Aligned_cols=25 Identities=40% Similarity=0.938 Sum_probs=17.6
Q ss_pred cc-ccCCccchhhhhhhhcCCCCCCCCCCCcc
Q 001071 164 KC-DCGFKICRECYLECAGNGGGRCPGCKEPY 194 (1165)
Q Consensus 164 ~C-eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~y 194 (1165)
-| +|||..+ ..-.....||.||..-
T Consensus 69 ~C~~CG~~F~------~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 69 QCRKCGFVFK------AEINIPSRCPKCKSEW 94 (105)
T ss_dssp BBTTTCCBCC------CCSSCCSSCSSSCCCC
T ss_pred ChhhCcCeec------ccCCCCCCCcCCCCCc
Confidence 78 9999871 2334458999999654
No 76
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.67 E-value=63 Score=27.84 Aligned_cols=46 Identities=15% Similarity=0.311 Sum_probs=31.4
Q ss_pred CCCCCcceeecCCCcccccccccCCc-cchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 145 VKSGLICGMKGCDEKVMQNKCDCGFK-ICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 145 ~~~g~~C~i~gcd~~~~~d~CeC~f~-iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
......|.||-+......- =.|+=. .|..|... .+.||-|+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVL-LPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEE-TTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEE-ECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 4567789997554422111 156655 89999973 4899999998864
No 77
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=25.46 E-value=20 Score=30.17 Aligned_cols=49 Identities=18% Similarity=0.529 Sum_probs=35.1
Q ss_pred CCCcceeecCCCcccc---c-cc--ccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 147 SGLICGMKGCDEKVMQ---N-KC--DCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 147 ~g~~C~i~gcd~~~~~---d-~C--eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
....|.||-+...... + +. .|+--.|+.|.+.-.+.. ..||-|+.+...
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINH 63 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-CCCCCCCCccCh
Confidence 4567999776644321 1 12 889999999997665544 699999999865
No 78
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.26 E-value=31 Score=28.54 Aligned_cols=41 Identities=27% Similarity=0.591 Sum_probs=30.2
Q ss_pred CCCcceeecCCCccccccc--ccCCccchhhhhhhhcC--CCCCCCCC
Q 001071 147 SGLICGMKGCDEKVMQNKC--DCGFKICRECYLECAGN--GGGRCPGC 190 (1165)
Q Consensus 147 ~g~~C~i~gcd~~~~~d~C--eC~f~iCr~Cy~~~~k~--g~~~Cp~C 190 (1165)
....|.||-+... +|. .|+--.|+.|.+.-.+. +...||-|
T Consensus 19 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCS---SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhC---CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4567999765443 433 88999999999877663 56789988
No 79
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=24.83 E-value=21 Score=39.31 Aligned_cols=46 Identities=15% Similarity=0.290 Sum_probs=35.3
Q ss_pred CCcceeecCCCccccccc---ccCCccchhhhhhhhcC-CCCCCCC--CCCcccc
Q 001071 148 GLICGMKGCDEKVMQNKC---DCGFKICRECYLECAGN-GGGRCPG--CKEPYKD 196 (1165)
Q Consensus 148 g~~C~i~gcd~~~~~d~C---eC~f~iCr~Cy~~~~k~-g~~~Cp~--Ck~~yk~ 196 (1165)
.-+|.||+. .+.||+ .||---||.|.+.-.++ +...||. |+.+...
T Consensus 181 el~CPIcl~---~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 181 ELTCPITCK---PYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CSBCTTTSS---BCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeECcCccC---cccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 346888654 457776 79999999999877655 5578998 9998865
No 80
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.68 E-value=57 Score=26.11 Aligned_cols=43 Identities=21% Similarity=0.395 Sum_probs=29.7
Q ss_pred CCCcceeecCCCcccccccccCCccchhhhhhhhcC--CCCCCCCC
Q 001071 147 SGLICGMKGCDEKVMQNKCDCGFKICRECYLECAGN--GGGRCPGC 190 (1165)
Q Consensus 147 ~g~~C~i~gcd~~~~~d~CeC~f~iCr~Cy~~~~k~--g~~~Cp~C 190 (1165)
....|.||-....... .-.|+--.|+.|...-.++ ....||-|
T Consensus 14 ~~~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPV-IIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCC-CCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCccE-eCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4567999766543221 1268888899999877554 67889987
No 81
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=24.07 E-value=16 Score=34.99 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=15.6
Q ss_pred hhhcCCCC-CCCCCCCccccCCCCC
Q 001071 178 ECAGNGGG-RCPGCKEPYKDASDGE 201 (1165)
Q Consensus 178 ~~~k~g~~-~Cp~Ck~~yk~~~~~~ 201 (1165)
++..+-.. .||.|+.+-.+...|+
T Consensus 83 ~e~~~~~~~~CP~Cgs~~~~i~~G~ 107 (119)
T 2kdx_A 83 FKPNALDYGVCEKCHSKNVIITQGN 107 (119)
T ss_dssp ECSCCSTTCCCSSSSSCCCEEEESS
T ss_pred EeCCCCCCCcCccccCCCcEEecCC
Confidence 34445556 8999999976533444
No 82
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=23.25 E-value=36 Score=29.90 Aligned_cols=26 Identities=19% Similarity=0.698 Sum_probs=15.8
Q ss_pred CCCCcceeecCCCccccc---cc-ccCCcc
Q 001071 146 KSGLICGMKGCDEKVMQN---KC-DCGFKI 171 (1165)
Q Consensus 146 ~~g~~C~i~gcd~~~~~d---~C-eC~f~i 171 (1165)
.---+|.-||.+..+... -| +|++.|
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAKEVIRCRECGHRV 48 (63)
T ss_dssp CCCCBCSSSCCBCCCCSSSCCCCSSSCCCC
T ss_pred CeEEECCCCCCeeecCCCCceECCCCCcEE
Confidence 345778887777765432 55 555544
No 83
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.61 E-value=56 Score=28.29 Aligned_cols=41 Identities=20% Similarity=0.441 Sum_probs=29.6
Q ss_pred CCcceeecCCCccccccc--ccCCc-cchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 148 GLICGMKGCDEKVMQNKC--DCGFK-ICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 148 g~~C~i~gcd~~~~~d~C--eC~f~-iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
...|.||-+.. .++. .|+-. .|+.|... ...||-|+.+...
T Consensus 25 ~~~C~IC~~~~---~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRN---IAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSC---CCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCC---CCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 34699965543 3333 67888 89999942 3789999999865
No 84
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=22.50 E-value=11 Score=37.33 Aligned_cols=44 Identities=18% Similarity=0.471 Sum_probs=34.0
Q ss_pred CCcceeecCCCccccccc--ccCCccchhhhhhhhcCCCCCCCCCCCcc
Q 001071 148 GLICGMKGCDEKVMQNKC--DCGFKICRECYLECAGNGGGRCPGCKEPY 194 (1165)
Q Consensus 148 g~~C~i~gcd~~~~~d~C--eC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~y 194 (1165)
.-.|.||..-. .+|. .|+---|+.|...-.+.+...||-|+.+.
T Consensus 31 ~~~C~IC~~~~---~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 31 KYLCSACRNVL---RRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGBCTTTCSBC---SSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCCCCCChhh---cCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 34688865433 4433 89999999999988888878999999865
No 85
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=21.94 E-value=16 Score=35.46 Aligned_cols=75 Identities=13% Similarity=0.085 Sum_probs=4.6
Q ss_pred ccccCCCCcccccccccccccC-C-CC------CCCCCcceeecCCCccc------------cc-----ccccCCccchh
Q 001071 120 TIFTGGFNSVTRGHVIDCSFEQ-T-EP------VKSGLICGMKGCDEKVM------------QN-----KCDCGFKICRE 174 (1165)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~-~-~~------~~~g~~C~i~gcd~~~~------------~d-----~CeC~f~iCr~ 174 (1165)
..+.||....+..--+.+. +- + +. +.....|.||-.+.... .+ ...|+-..|+.
T Consensus 13 ~~~~gg~~~~~~~~~~~r~-~ikkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~ 91 (117)
T 4a0k_B 13 LYFQGGGRGTNSGAGKKRF-EVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFH 91 (117)
T ss_dssp ---------------CCSE-EEEEEEEEEEEEECCCC-------------------------------------------
T ss_pred hhhccCCCCCCCCCcCCce-EEEEEEEEEEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHH
Confidence 4566666655554333222 21 1 21 56678999977665321 11 11577778889
Q ss_pred hhhhhhcCCCCCCCCCCCcccc
Q 001071 175 CYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 175 Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
|...-.+. +..||-|+.+++-
T Consensus 92 CI~~Wl~~-~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 92 CISRWLKT-RQVCPLDNREWEF 112 (117)
T ss_dssp ----------------------
T ss_pred HHHHHHHc-CCcCCCCCCeeee
Confidence 98554444 6899999998753
No 86
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=21.53 E-value=16 Score=36.23 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=10.2
Q ss_pred CCCCCCCCCcccc
Q 001071 184 GGRCPGCKEPYKD 196 (1165)
Q Consensus 184 ~~~Cp~Ck~~yk~ 196 (1165)
...||.|+.+--.
T Consensus 107 ~~~CP~Cgs~~~~ 119 (139)
T 3a43_A 107 FLACPKCGSHDFE 119 (139)
T ss_dssp GCSCSSSSCCCEE
T ss_pred CCcCccccCCccE
Confidence 5789999988643
No 87
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.07 E-value=17 Score=30.67 Aligned_cols=47 Identities=15% Similarity=0.359 Sum_probs=34.2
Q ss_pred CCCcceeecCCCcccccccccCCccchhhhhhhhcCCCCCCCCCCCcccc
Q 001071 147 SGLICGMKGCDEKVMQNKCDCGFKICRECYLECAGNGGGRCPGCKEPYKD 196 (1165)
Q Consensus 147 ~g~~C~i~gcd~~~~~d~CeC~f~iCr~Cy~~~~k~g~~~Cp~Ck~~yk~ 196 (1165)
....|.||-...... .-.|+-..|+.|...-.+ ....||-|+.+...
T Consensus 14 ~~~~C~IC~~~~~~~--~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 14 DEEECCICMDGRADL--ILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCSSSCCSCCSE--EETTTEEECHHHHHHSSC-CCSSCHHHHHCTTC
T ss_pred CCCCCeeCCcCccCc--ccCCCCcccHHHHHHHHH-CcCcCCCcCCcccC
Confidence 456899976665431 115777789999976554 67899999998865
Done!