BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001072
(1164 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O14099|YERG_SCHPO Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=4 SV=1
Length = 425
Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 131/233 (56%), Gaps = 9/233 (3%)
Query: 919 QNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIASQQKSLQARDSEISNGEDLFGCSP 978
Q+ + +I ++ S L +RKA L+Q ++ S ++ ++ + D + DL
Sbjct: 74 QDSVREKIHEIQSMSQLSEKRKALLMQKMLMSGYLKYRRTHKKESDENQLSSSDL---EK 130
Query: 979 SFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKV 1038
++ D E+++ GC HY RNCK++ C + +TCR CH+ DH ++R A M+CM C KV
Sbjct: 131 TYYDKEQEILGCSHYMRNCKVQCFDCHEWYTCRHCHNDACDHVLERPAVENMLCMICSKV 190
Query: 1039 QPVGPVCTTLSCSGLSMAKYYCGICKFFDDE--RVVYHCPFCNLCRVGRGLGVDFFHCMT 1096
QP C C M +YYC CK +DD+ + YHC C +CR+GRGLG D+FHC T
Sbjct: 191 QPAAQYCKY--CKN-CMGRYYCNKCKLWDDDPNKSSYHCDDCGICRIGRGLGDDYFHCKT 247
Query: 1097 CNCCLAKKLVD-HKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQ 1148
C CL + + H+C E+ + NCPIC +++F S V L C H +H C +
Sbjct: 248 CGLCLPISVFNTHRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHE 300
>sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger domain-containing protein 1 OS=Homo
sapiens GN=RCHY1 PE=1 SV=1
Length = 261
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 94/166 (56%), Gaps = 6/166 (3%)
Query: 984 EKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGP 1043
E+ GCEHY R C L+A CC KL+TCR CHD DH +DR E+ C+ C K+Q
Sbjct: 14 ERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEVQCINCEKIQHAQQ 73
Query: 1044 VCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAK 1103
C CS L +YYC IC FD ++ YHC C +CR+G DFFHC+ CN CLA
Sbjct: 74 TCE--ECSTL-FGEYYCDICHLFDKDKKQYHCENCGICRIGP--KEDFFHCLKCNLCLAM 128
Query: 1104 KLVD-HKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQ 1148
L HKC E NCPIC + + TS LPCGH +H C++
Sbjct: 129 NLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYE 174
>sp|Q9CR50|ZN363_MOUSE RING finger and CHY zinc finger domain-containing protein 1 OS=Mus
musculus GN=Rchy1 PE=1 SV=1
Length = 261
Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/171 (43%), Positives = 94/171 (54%), Gaps = 6/171 (3%)
Query: 979 SFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKV 1038
R+ + GCEHY R C L+A CC KL+TCR CHD DH +DR E+ C+ C K+
Sbjct: 9 GVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKL 68
Query: 1039 QPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCN 1098
Q C CS L +YYC IC FD ++ YHC C +CR+G DFFHC+ CN
Sbjct: 69 QHAQQTCE--DCSTL-FGEYYCSICHLFDKDKRQYHCESCGICRIGP--KEDFFHCLKCN 123
Query: 1099 CCLAKKLV-DHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQ 1148
CL L HKC E NCPIC + + TS LPCGH +H C++
Sbjct: 124 LCLTTNLRGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYE 174
>sp|A2VE78|FBXL5_BOVIN F-box/LRR-repeat protein 5 OS=Bos taurus GN=FBXL5 PE=2 SV=1
Length = 691
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 70 TNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLF 129
TN D LL+ + +K H E+E I L R + I +S E +
Sbjct: 32 TNFSNNNDFRALLQSLYATFKEFKMHEQIENEYIIGLLQQRSQTIYNVHSDNKLSEML-- 89
Query: 130 DQLFELLNSSMRNEE---SYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEE 184
LFE +++NE +Y ++L A HM +EEE P+L+E F++EE
Sbjct: 90 -SLFEKGLKNVKNEYEQLNYAKQLKERLEAFTKDFLPHMKEEEEVFQPMLMEYFTYEE 146
>sp|Q8C2S5|FBXL5_MOUSE F-box/LRR-repeat protein 5 OS=Mus musculus GN=Fbxl5 PE=2 SV=2
Length = 690
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 70 TNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLF 129
TN D LL+ + +K H E+E I L R + I +S E +
Sbjct: 32 TNFSNNNDFRALLQSLYATFKEFKMHEQIENEYIIGLLQQRSQTIYNVHSDNKLSEML-- 89
Query: 130 DQLFELLNSSMRNEE---SYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEE 184
LFE +++NE +Y ++L A HM +EEE P+L+E F++EE
Sbjct: 90 -SLFEKGLKNVKNEYEQLNYAKQLKERLEAFTRDFLPHMKEEEEVFQPMLMEYFTYEE 146
>sp|Q9UKA1|FBXL5_HUMAN F-box/LRR-repeat protein 5 OS=Homo sapiens GN=FBXL5 PE=1 SV=2
Length = 691
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 70 TNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLF 129
TN D LL+ + +K H E+E I L R + I +S E +
Sbjct: 32 TNFSNNNDFRALLQSLYATFKEFKMHEQIENEYIIGLLQQRSQTIYNVHSDNKLSEML-- 89
Query: 130 DQLFELLNSSMRNEE---SYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEE 184
LFE +++NE +Y ++L A HM +EEE P+L+E F++EE
Sbjct: 90 -SLFEKGLKNVKNEYEQLNYAKQLKERLEAFTRDFLPHMKEEEEVFQPMLMEYFTYEE 146
>sp|Q5R6E1|FBXL5_PONAB F-box/LRR-repeat protein 5 OS=Pongo abelii GN=FBXL5 PE=2 SV=1
Length = 691
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 70 TNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLF 129
TN D LL+ + +K H E+E I L R + I +S E +
Sbjct: 32 TNFSNNNDFRALLQSLYATFKEFKMHEQIENEYIIGLLQQRSQTIYNVHSDNKLSEML-- 89
Query: 130 DQLFELLNSSMRNEE---SYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEE 184
LFE +++NE +Y ++L A HM +EEE P+L+E F++EE
Sbjct: 90 -SLFEKGLKNVKNEYEQLNYAKQLKERLEAFTRDFLPHMKEEEEVFQPMLMEYFTYEE 146
>sp|Q6INS1|FBXL5_XENLA F-box/LRR-repeat protein 5 OS=Xenopus laevis GN=fbxl5 PE=2 SV=1
Length = 678
Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 70 TNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLF 129
TN D+ LL+ + +K H E+E I L R + +S E ++
Sbjct: 32 TNFSNNNDLLALLQSLYETFKEFKMHEQIENEYIIGLLQQRSHTVYNVHSDNKLSEMLV- 90
Query: 130 DQLFELLNSSMRNEE---SYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQA 186
LFE +++NE +Y ++L A + HM +EEE P+L+E F+++E
Sbjct: 91 --LFEKGMKNVKNEYKQLNYVQQLKERLEAFTSDFLPHMKEEEEVFQPMLMEYFTYDEMK 148
Query: 187 SL 188
+
Sbjct: 149 DI 150
>sp|Q5XGI3|FBXL5_XENTR F-box/LRR-repeat protein 5 OS=Xenopus tropicalis GN=fbxl5 PE=2 SV=1
Length = 660
Score = 40.4 bits (93), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
Query: 70 TNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLF 129
TN D LL+ + +K H E+E I L R + + +S E ++
Sbjct: 32 TNFSSNTDFLALLQSLYETFKEFKMHEQIENEYIIGLLQQRSQTVFNVHSDNKLSEMLV- 90
Query: 130 DQLFELLNSSMRNEE----SYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEE 184
LFE M+N E +Y ++L A + HM +EEE P+L+E F+++E
Sbjct: 91 --LFE---KGMKNNEYEQLNYAQQLKERLEAFTSDFLPHMKEEEEVFQPMLMEYFTYDE 144
>sp|Q9URY9|YI06_SCHPO Uncharacterized hemerythrin-like protein C869.06c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC869.06c PE=3 SV=1
Length = 203
Score = 38.1 bits (87), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 11/131 (8%)
Query: 302 NAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVEL- 360
+AI ++ + + I+ + D+ + + QF+ E+ HS+ E+ V++P + L
Sbjct: 28 DAIFKDHRKLQSDYQNIKSANDYDTATRWQN--QFVWELAR-HSVGEEIVVYPKFEKYLG 84
Query: 361 SFAQEHAEEEIQFDKL-RCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEV 419
+E AE++ +L + ++ QS AN S D +M S+QKH EE
Sbjct: 85 EEGKEMAEKDRHEHQLVKEMLYKFQSMKANQSN------FIPALDELMESLQKHIDEEEQ 138
Query: 420 QVLPLARRHFS 430
+P +H S
Sbjct: 139 HDIPFLEKHLS 149
>sp|C0HAC0|FBXL5_SALSA F-box/LRR-repeat protein 5 OS=Salmo salar GN=fbxl5 PE=2 SV=1
Length = 696
Score = 37.7 bits (86), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Query: 70 TNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLF 129
TN D L+ +K H E+E I L R N+ +S E +
Sbjct: 32 TNFSNNNDFRSFLQSLCATFKEFKMHEQIENEYIIGLLQQRSCNVYNVHSDNKLSEML-- 89
Query: 130 DQLFELLNSSMRNEE---SYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEE 184
LFE S+++E +Y ++L A HM +EEE P+L++ F++EE
Sbjct: 90 -SLFEKGLRSVKSENEQLNYAQQLKERLEAFTQDFLPHMKEEEEVFQPMLMQYFTYEE 146
>sp|Q5SPX3|RN215_MOUSE RING finger protein 215 OS=Mus musculus GN=Rnf215 PE=2 SV=1
Length = 379
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 1108 HKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDC 1146
H E G ET C +C D+ F + +R LPC H H DC
Sbjct: 317 HSLPEPGTET-CAVCLDY-FCNKQWLRVLPCKHEFHRDC 353
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDC 1146
G CP+C + +T +VR LPC H H+DC
Sbjct: 223 GFGLECPVCKED-YTVGESVRQLPCNHLFHNDC 254
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDC 1146
GLE CP+C + +T +VR LPC H H+DC
Sbjct: 224 GLE--CPVCKED-YTVGESVRQLPCNHLFHNDC 253
>sp|Q2YDQ5|FBXL5_DANRE F-box/LRR-repeat protein 5 OS=Danio rerio GN=fbxl5 PE=2 SV=2
Length = 679
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 12/130 (9%)
Query: 70 TNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLF 129
TN D L+ +K H E+E I L R++++ H
Sbjct: 32 TNFSNNRDFRSFLQSLLDTFTEFKKHEQIENECIMELLQ------ERSHTVYHVHADNKL 85
Query: 130 DQLFELLNSSMRNEES------YRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFE 183
+ L +R+ S Y ++L A HM +EEE P+L+E FS+E
Sbjct: 86 SDMLTLFQKGLRSVTSEFEQLNYAQQLKERLEAFTQDFIPHMKEEEEVYQPMLMEYFSYE 145
Query: 184 EQASLVWQFL 193
E ++ Q +
Sbjct: 146 ELKAIKQQVM 155
>sp|Q93YV6|2A5I_ARATH Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit
B' iota isoform OS=Arabidopsis thaliana GN=B'IOTA PE=2
SV=1
Length = 500
Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 80/342 (23%), Positives = 125/342 (36%), Gaps = 60/342 (17%)
Query: 557 VKRGNSMLLEDCDACSGAKSVNTPSSSRSNQSCCVPGLGVSSSNLGSSLAAAKSLRSLSF 616
VKR + L D A SG+ P+ + C V V N SS F
Sbjct: 110 VKRQTLLELLDFVA-SGSVKFTEPAILAMCRMCAVNLFRVFPPNYRSSSGGENDDDEPMF 168
Query: 617 SPSAPSLNSSLFNWETDLSSADIGCASRPIDNIFKFHKAIRKDLEYLDGESGKLNDCNET 676
P+ P L ++ L C + + H I + L+ D E + +C +T
Sbjct: 169 DPAWPHLQ---IVYDLLLKFITSPCLDAKVAKKYLDHAFIVRLLDLFDSEDPRERECLKT 225
Query: 677 FLRQFTGRFRLLWGLYR-AHSNAEDDIVFPA------LESKETLSNVSHSYTLDHKQEEK 729
L + G+F + R + SN VF E E ++ + L K+E K
Sbjct: 226 ILHRVYGKFMVHRPFVRKSMSNIFYRFVFETEKHSGIAELLEIFGSIVSGFALPLKEEHK 285
Query: 730 LFEDISSALSELTELHECLSTDLTGDLTRNSLESCDQNETVRKYNEKATELQGMCKSIRV 789
+F L LH+ S G+ + L C ++ + ++G+ K +
Sbjct: 286 IF-----LWRVLIPLHKPKS---VGNYFQQ-LSYCITQFIDKEPKLGSVVIKGLLKFWPI 336
Query: 790 TLDQH--VFREELE--------------LWPLFDR--------HFSVEEQ-------DKI 818
T Q +F E+E + PLF R HF V E+ D+I
Sbjct: 337 TNSQKEVMFLGEVEEIVEAMSVMEFQKIMVPLFLRIACCVTSSHFQVSERALFLWNNDQI 396
Query: 819 VGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKN 860
V +IG Q++LP + +AL + QN W Q+ N
Sbjct: 397 VN-LIGHNR----QAILPIMFTALEKNAQN----HWNQSVLN 429
>sp|B9KFM5|SECA_CAMLR Protein translocase subunit SecA OS=Campylobacter lari (strain
RM2100 / D67 / ATCC BAA-1060) GN=secA PE=3 SV=1
Length = 863
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 18/170 (10%)
Query: 612 RSLSFSPSAPSLNSSLFNWETDLSSADIGCASRPIDNIFKFHKAIRKDLEYLDGESGKLN 671
R++ + + S LF E +L S D + +D K H KD+ Y+ L
Sbjct: 272 RTIMITEAGISKAEKLFGVE-NLYSLDNAILAHQLDQALKAHNLFEKDVHYV------LR 324
Query: 672 DCNETFLRQFTGRF----RLLWGLYRAHSNAEDDIVFPALESKETLSNVS-HSYTLDHKQ 726
D + +FTGR R GL++A E+ E +TL++++ +Y +K
Sbjct: 325 DKEVVIVDEFTGRLSEGRRFSDGLHQALEAKEN---VKIQEESQTLADITFQNYFRMYK- 380
Query: 727 EEKLFEDISSALSELTELHECLSTDLTGDLTRNSLESCDQNETVRKYNEK 776
KL +A +E TE + + D+ T + D+++ + K E+
Sbjct: 381 --KLAGMTGTAQTEATEFSQIYNLDVVSIPTNIPVARIDKDDLIYKTQEE 428
>sp|O60140|YNS9_SCHPO Uncharacterized protein C18H10.09 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC18H10.09 PE=4 SV=2
Length = 495
Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 989 GCEHYKRNCK-LRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRC 1035
CEHYK++ + R +CC +++ C CHD +H+ + ++C C
Sbjct: 395 ACEHYKKSFRWFRFSCCDRVYPCDECHDADQNHTFEH--ANRIICGYC 440
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1
Length = 312
Score = 35.0 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDC 1146
GLE CP+C + +T VR LPC H H+DC
Sbjct: 225 GLE--CPVCKED-YTVGECVRQLPCNHLFHNDC 254
>sp|A6QAC7|SECA_SULNB Protein translocase subunit SecA OS=Sulfurovum sp. (strain NBC37-1)
GN=secA PE=3 SV=1
Length = 879
Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 74/181 (40%), Gaps = 18/181 (9%)
Query: 612 RSLSFSPSAPSLNSSLFNWETDLSSADIGCASRPIDNIFKFHKAIRKDLEYLDGESGKLN 671
R++ + LF + +L S + S +D K H KD++Y+ +
Sbjct: 274 RTIVMTEQGLQKAQDLFEVD-NLYSLENAVLSHHLDQALKAHNIFEKDVDYV------VQ 326
Query: 672 DCNETFLRQFTGRF----RLLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLDHKQE 727
D + +FTGR R GL++A E E +TL+ +++ +
Sbjct: 327 DNEIIIVDEFTGRLSEGRRYSEGLHQALEAKEG---VEIQEESQTLAEITYQNYF--RLY 381
Query: 728 EKLFEDISSALSELTELHECLSTDLTGDLTRNSLESCDQNETVRKYNEKATELQGMCKSI 787
KL +A +E TE + D+ T +E D+N+ + YN + +L + + +
Sbjct: 382 NKLAGMTGTAQTEATEFSQIYGLDVISIPTNVPVERADRNDLI--YNTEKEKLDAVVRKV 439
Query: 788 R 788
+
Sbjct: 440 K 440
>sp|Q4L8T8|SCDA_STAHJ Iron-sulfur cluster repair protein ScdA OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=scdA PE=3 SV=1
Length = 222
Score = 35.0 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 9/109 (8%)
Query: 651 KFHKAIRKDLEYLD---GESGKLNDCNETFLRQFTGRFRLLWGLYRAHSNAEDDIVFPAL 707
++H+ +R++ + L + K++ N FL Q +R H ED+ FPAL
Sbjct: 83 RYHETMREEFKNLSPYVTKVAKVHGPNHPFLIQLQDLYRQYRDGMLEHMAQEDEHDFPAL 142
Query: 708 ------ESKETLSNVSHSYTLDHKQEEKLFEDISSALSELTELHECLST 750
E + S++ S DH Q +L ED+ S+ E T
Sbjct: 143 IKLSRGEQVDHSSDIIQSLVDDHTQTGQLLEDMRELTSQYQPPSEACQT 191
>sp|O42393|RAPSN_CHICK 43 kDa receptor-associated protein of the synapse OS=Gallus gallus
GN=RAPSN PE=2 SV=3
Length = 412
Score = 34.7 bits (78), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 1108 HKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV 1149
H+C E+ +E C +C + + + ++ALPC HF H C Q
Sbjct: 353 HECVEE-MELYCGMCGESIGEKNNQLQALPCSHFFHLKCLQT 393
>sp|O43034|YGU5_SCHPO Uncharacterized protein C3B9.05 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPBC3B9.05 PE=4 SV=2
Length = 116
Score = 34.3 bits (77), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 999 LRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLK 1037
+R ACC + C CH++++DH + + + ++C +C K
Sbjct: 12 IRTACCRRWIDCIECHNEIADHPLLKTSELTLICKKCRK 50
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 33.9 bits (76), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDC 1146
GLE CP+C + +T VR LPC HF HS C
Sbjct: 226 GLE--CPVCKE-DYTVEEKVRQLPCNHFFHSSC 255
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 33.9 bits (76), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 1101 LAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDC 1146
L V + + GLE CP+C + +T VR LPC HF HS C
Sbjct: 212 LPTVTVTQEQVDMGLE--CPVCKE-DYTVEEEVRQLPCNHFFHSSC 254
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 408,862,831
Number of Sequences: 539616
Number of extensions: 16519527
Number of successful extensions: 50661
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 50187
Number of HSP's gapped (non-prelim): 337
length of query: 1164
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1035
effective length of database: 121,958,995
effective search space: 126227559825
effective search space used: 126227559825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)