Query 001072
Match_columns 1164
No_of_seqs 416 out of 672
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 09:36:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkt_A Ring finger and CHY zin 100.0 7.9E-50 2.7E-54 396.4 8.5 138 975-1117 4-142 (143)
2 2p0n_A Hypothetical protein NM 99.5 6.2E-14 2.1E-18 143.6 15.1 149 41-194 15-168 (172)
3 2p0n_A Hypothetical protein NM 99.5 7.4E-13 2.5E-17 135.6 17.4 145 291-443 15-168 (172)
4 3cax_A Uncharacterized protein 99.2 6.1E-11 2.1E-15 135.4 15.7 149 291-443 8-166 (369)
5 3cax_A Uncharacterized protein 99.0 3.1E-09 1.1E-13 121.3 16.5 149 41-192 8-164 (369)
6 2ecm_A Ring finger and CHY zin 98.1 1.1E-06 3.9E-11 72.8 1.9 44 1114-1157 3-53 (55)
7 2ep4_A Ring finger protein 24; 97.7 1.4E-05 4.9E-10 70.3 2.9 47 1111-1158 10-63 (74)
8 2ecl_A Ring-box protein 2; RNF 97.7 1.4E-05 4.8E-10 72.3 2.3 44 1116-1159 26-76 (81)
9 2kiz_A E3 ubiquitin-protein li 97.6 2.4E-05 8.3E-10 67.9 2.7 45 1113-1158 11-62 (69)
10 1iym_A EL5; ring-H2 finger, ub 97.5 2.3E-05 8E-10 64.9 1.3 42 1116-1158 5-54 (55)
11 1x4j_A Ring finger protein 38; 97.5 2.1E-05 7.1E-10 69.6 0.8 42 1115-1157 22-70 (75)
12 2ea6_A Ring finger protein 4; 97.4 4E-05 1.4E-09 65.9 1.7 42 1116-1157 15-66 (69)
13 1g25_A CDK-activating kinase a 97.4 4.6E-05 1.6E-09 65.5 2.0 43 1116-1158 3-54 (65)
14 3ng2_A RNF4, snurf, ring finge 97.4 5E-05 1.7E-09 66.0 2.0 44 1115-1158 9-62 (71)
15 1v87_A Deltex protein 2; ring- 97.4 4.5E-05 1.5E-09 72.6 1.9 44 1115-1158 24-93 (114)
16 2l0b_A E3 ubiquitin-protein li 97.4 4.3E-05 1.5E-09 70.5 1.5 42 1115-1157 39-87 (91)
17 2xeu_A Ring finger protein 4; 97.4 5.7E-05 2E-09 64.0 2.0 43 1116-1158 3-55 (64)
18 2ect_A Ring finger protein 126 97.3 5.6E-05 1.9E-09 67.1 1.3 42 1116-1158 15-63 (78)
19 2ct2_A Tripartite motif protei 97.3 8.7E-05 3E-09 67.0 2.3 43 1116-1158 15-67 (88)
20 1chc_A Equine herpes virus-1 r 97.3 7.7E-05 2.6E-09 64.4 1.7 39 1116-1157 5-50 (68)
21 2ecn_A Ring finger protein 141 97.2 0.00014 4.7E-09 63.3 2.5 38 1116-1158 15-59 (70)
22 1e4u_A Transcriptional repress 97.1 0.00016 5.6E-09 65.3 2.5 41 1116-1158 11-61 (78)
23 2d8t_A Dactylidin, ring finger 97.1 0.00018 6E-09 63.0 2.0 39 1115-1157 14-59 (71)
24 3dpl_R Ring-box protein 1; ubi 97.1 0.00016 5.3E-09 69.2 1.7 44 1116-1159 48-101 (106)
25 2djb_A Polycomb group ring fin 96.9 0.00023 8E-09 62.4 1.7 39 1116-1157 15-60 (72)
26 4ayc_A E3 ubiquitin-protein li 96.9 0.00025 8.6E-09 70.1 1.5 37 1117-1157 54-97 (138)
27 2csy_A Zinc finger protein 183 96.9 0.00035 1.2E-08 62.6 2.2 38 1116-1157 15-59 (81)
28 2y43_A E3 ubiquitin-protein li 96.7 0.00045 1.5E-08 64.2 1.6 40 1116-1158 22-68 (99)
29 2ecy_A TNF receptor-associated 96.6 0.00064 2.2E-08 58.5 2.0 38 1116-1157 15-60 (66)
30 2ckl_A Polycomb group ring fin 96.5 0.00064 2.2E-08 64.2 1.6 40 1116-1158 15-61 (108)
31 2ysl_A Tripartite motif-contai 96.5 0.0007 2.4E-08 59.0 1.6 38 1116-1157 20-67 (73)
32 3lrq_A E3 ubiquitin-protein li 96.5 0.00071 2.4E-08 63.4 1.6 40 1116-1158 22-69 (100)
33 2ckl_B Ubiquitin ligase protei 96.5 0.00071 2.4E-08 68.7 1.6 38 1117-1157 55-100 (165)
34 4a0k_B E3 ubiquitin-protein li 96.4 0.00055 1.9E-08 66.7 0.4 43 1117-1159 49-112 (117)
35 4ap4_A E3 ubiquitin ligase RNF 96.4 0.00089 3.1E-08 64.4 1.7 43 1116-1158 7-59 (133)
36 2egp_A Tripartite motif-contai 96.4 0.00062 2.1E-08 60.2 0.6 39 1116-1158 12-64 (79)
37 2ecw_A Tripartite motif-contai 96.3 0.0011 3.8E-08 59.0 1.7 39 1116-1158 19-70 (85)
38 3fl2_A E3 ubiquitin-protein li 96.3 0.0011 3.6E-08 64.2 1.7 37 1117-1157 53-97 (124)
39 2ecv_A Tripartite motif-contai 96.3 0.0012 4.2E-08 58.7 1.8 39 1116-1158 19-70 (85)
40 3l11_A E3 ubiquitin-protein li 96.3 0.00099 3.4E-08 63.5 1.1 39 1116-1158 15-61 (115)
41 2ecg_A Baculoviral IAP repeat- 96.2 0.0018 6.3E-08 57.4 2.2 38 1116-1157 25-66 (75)
42 4ic3_A E3 ubiquitin-protein li 96.1 0.0015 5.3E-08 57.9 1.5 38 1116-1157 24-65 (74)
43 2yur_A Retinoblastoma-binding 96.1 0.0011 3.8E-08 58.5 0.5 38 1116-1157 15-62 (74)
44 2ecj_A Tripartite motif-contai 96.0 0.0023 8E-08 53.1 2.2 30 1116-1149 15-44 (58)
45 1jm7_A BRCA1, breast cancer ty 96.0 0.0017 5.8E-08 61.2 1.1 39 1116-1158 21-69 (112)
46 2ysj_A Tripartite motif-contai 95.9 0.0025 8.5E-08 54.2 1.9 30 1116-1149 20-49 (63)
47 1bor_A Transcription factor PM 95.9 0.0015 5E-08 54.9 0.4 40 1115-1158 5-48 (56)
48 2ea5_A Cell growth regulator w 95.9 0.0028 9.4E-08 55.7 2.1 39 1115-1157 14-56 (68)
49 1t1h_A Gspef-atpub14, armadill 95.9 0.0022 7.6E-08 56.7 1.5 38 1116-1157 8-53 (78)
50 4ap4_A E3 ubiquitin ligase RNF 95.9 0.0036 1.2E-07 60.1 3.1 44 1115-1158 71-124 (133)
51 2d8s_A Cellular modulator of i 95.7 0.0034 1.1E-07 57.1 1.8 44 1114-1159 13-70 (80)
52 3ztg_A E3 ubiquitin-protein li 95.7 0.0027 9.2E-08 58.0 1.0 38 1116-1157 13-60 (92)
53 1z6u_A NP95-like ring finger p 95.5 0.0034 1.1E-07 63.3 1.3 39 1116-1158 78-124 (150)
54 1jm7_B BARD1, BRCA1-associated 95.4 0.003 1E-07 60.6 0.3 40 1116-1158 22-66 (117)
55 3hct_A TNF receptor-associated 95.3 0.0043 1.5E-07 59.6 1.3 40 1116-1159 18-65 (118)
56 1rmd_A RAG1; V(D)J recombinati 95.3 0.005 1.7E-07 58.7 1.7 39 1116-1158 23-69 (116)
57 3u9j_A F-BOX/LRR-repeat protei 95.2 0.19 6.4E-06 49.9 12.2 146 44-193 8-155 (160)
58 2vje_B MDM4 protein; proto-onc 94.9 0.0059 2E-07 52.6 0.7 42 1114-1157 5-54 (63)
59 2y1n_A E3 ubiquitin-protein li 94.7 0.01 3.5E-07 68.5 2.3 39 1115-1157 331-377 (389)
60 2yho_A E3 ubiquitin-protein li 94.4 0.012 4E-07 53.1 1.5 38 1116-1157 18-59 (79)
61 3u9j_A F-BOX/LRR-repeat protei 94.2 0.29 1E-05 48.5 10.7 145 294-442 8-155 (160)
62 2vje_A E3 ubiquitin-protein li 94.1 0.013 4.4E-07 50.6 1.0 43 1111-1157 3-55 (64)
63 3knv_A TNF receptor-associated 94.0 0.019 6.4E-07 57.3 2.1 39 1116-1158 31-77 (141)
64 2ct0_A Non-SMC element 1 homol 92.7 0.034 1.2E-06 49.9 1.4 40 1116-1158 15-63 (74)
65 3t6p_A Baculoviral IAP repeat- 92.5 0.026 9E-07 64.3 0.5 38 1116-1157 295-336 (345)
66 3hcs_A TNF receptor-associated 90.8 0.066 2.3E-06 54.3 1.3 39 1116-1158 18-64 (170)
67 2kr4_A Ubiquitin conjugation f 90.5 0.087 3E-06 47.9 1.6 38 1116-1157 14-58 (85)
68 1wgm_A Ubiquitin conjugation f 90.4 0.088 3E-06 49.4 1.6 38 1116-1157 22-67 (98)
69 3k1l_B Fancl; UBC, ring, RWD, 90.4 0.09 3.1E-06 59.7 1.9 44 1114-1157 306-371 (381)
70 2kre_A Ubiquitin conjugation f 90.1 0.082 2.8E-06 49.8 1.1 38 1116-1157 29-73 (100)
71 1wim_A KIAA0161 protein; ring 89.2 0.17 6E-06 46.4 2.6 33 1116-1149 5-37 (94)
72 3htk_C E3 SUMO-protein ligase 88.5 0.13 4.6E-06 56.4 1.5 40 1116-1158 181-231 (267)
73 2c2l_A CHIP, carboxy terminus 88.2 0.12 4.2E-06 55.5 1.0 36 1118-1157 210-253 (281)
74 1vyx_A ORF K3, K3RING; zinc-bi 85.6 0.33 1.1E-05 41.6 2.0 42 1112-1157 2-57 (60)
75 2f42_A STIP1 homology and U-bo 83.3 0.37 1.3E-05 50.1 1.5 37 1117-1157 107-151 (179)
76 2yu4_A E3 SUMO-protein ligase 73.5 1.3 4.5E-05 40.7 1.9 30 1116-1148 7-36 (94)
77 2jrp_A Putative cytoplasmic pr 67.0 1.9 6.6E-05 39.4 1.5 50 999-1065 3-59 (81)
78 3nw0_A Non-structural maintena 65.7 2.6 9E-05 45.5 2.5 21 933-953 131-151 (238)
79 2jne_A Hypothetical protein YF 59.6 2.3 7.9E-05 40.0 0.6 49 999-1064 33-88 (101)
80 2dkt_A Ring finger and CHY zin 58.3 3 0.0001 42.0 1.1 26 1077-1103 85-110 (143)
81 2bay_A PRE-mRNA splicing facto 48.8 6.8 0.00023 33.4 1.7 39 1115-1156 2-47 (61)
82 2jne_A Hypothetical protein YF 47.8 6 0.00021 37.3 1.3 24 1091-1126 48-71 (101)
83 2lbm_A Transcriptional regulat 47.3 13 0.00045 37.3 3.7 90 1028-1124 13-116 (142)
84 4ayb_P DNA-directed RNA polyme 47.1 9.1 0.00031 31.6 2.0 27 1055-1081 1-32 (48)
85 4rxn_A Rubredoxin; electron tr 42.9 11 0.00037 32.0 1.9 26 1055-1080 1-44 (54)
86 1wii_A Hypothetical UPF0222 pr 41.9 10 0.00034 35.0 1.8 34 1070-1103 21-59 (85)
87 1zfo_A LAsp-1; LIM domain, zin 40.5 9.1 0.00031 28.5 1.1 30 1115-1147 2-31 (31)
88 3agt_A Hemerythrin-like domain 39.4 62 0.0021 31.3 7.2 71 114-193 15-86 (136)
89 1e8j_A Rubredoxin; iron-sulfur 37.0 17 0.0006 30.4 2.3 13 1055-1067 1-14 (52)
90 6rxn_A Rubredoxin; electron tr 37.0 14 0.00047 30.4 1.7 25 1055-1079 2-37 (46)
91 3v43_A Histone acetyltransfera 35.7 18 0.0006 34.4 2.5 26 1078-1103 64-89 (112)
92 3dzy_A Retinoic acid receptor 34.0 5.4 0.00019 47.0 -1.7 62 1028-1103 136-203 (467)
93 2v3b_B Rubredoxin 2, rubredoxi 34.0 17 0.00056 30.9 1.7 14 1055-1068 1-15 (55)
94 1dx8_A Rubredoxin; electron tr 33.7 16 0.00056 32.4 1.7 14 1054-1067 4-18 (70)
95 3agt_A Hemerythrin-like domain 33.1 3.3E+02 0.011 26.0 13.3 113 294-427 16-132 (136)
96 3oao_A Uncharacterized protein 32.3 1.7E+02 0.0058 29.4 9.1 68 143-210 41-121 (147)
97 2kn9_A Rubredoxin; metalloprot 32.1 21 0.0007 32.7 2.1 15 1054-1068 24-39 (81)
98 2kdx_A HYPA, hydrogenase/ureas 31.1 20 0.00068 34.4 2.0 27 1055-1081 71-99 (119)
99 3rfy_A Peptidyl-prolyl CIS-tra 30.9 1.9E+02 0.0066 33.2 10.3 63 74-140 46-120 (369)
100 2k4x_A 30S ribosomal protein S 30.9 31 0.001 29.2 2.9 28 1070-1099 16-44 (55)
101 3vk6_A E3 ubiquitin-protein li 30.4 17 0.00059 34.5 1.4 38 1118-1158 3-48 (101)
102 1s24_A Rubredoxin 2; electron 29.9 19 0.00064 33.4 1.5 17 1052-1068 30-47 (87)
103 2dlq_A GLI-kruppel family memb 29.6 20 0.00067 32.7 1.7 36 1089-1124 64-102 (124)
104 1twf_L ABC10-alpha, DNA-direct 29.4 24 0.00081 31.4 2.0 24 1056-1079 27-52 (70)
105 2jrp_A Putative cytoplasmic pr 28.5 23 0.00079 32.4 1.8 8 1072-1079 18-25 (81)
106 3izc_m 60S ribosomal protein R 28.2 19 0.00064 33.7 1.2 12 1070-1081 52-63 (92)
107 2egq_A FHL1 protein; LIM domai 27.8 13 0.00046 32.1 0.2 39 1116-1157 15-56 (77)
108 3pfq_A PKC-B, PKC-beta, protei 27.8 22 0.00074 43.5 2.0 84 1058-1149 49-147 (674)
109 2ko5_A Ring finger protein Z; 27.5 16 0.00054 34.4 0.6 54 1052-1131 23-76 (99)
110 1wyh_A SLIM 2, skeletal muscle 27.1 13 0.00043 31.8 -0.2 38 1117-1157 6-43 (72)
111 3iz5_m 60S ribosomal protein L 26.3 19 0.00066 33.6 1.0 10 1071-1080 53-62 (92)
112 2hmq_A Hemerythrin; oxygen tra 25.7 1.6E+02 0.0053 27.7 7.2 55 784-842 44-102 (113)
113 3cc2_Z 50S ribosomal protein L 25.6 17 0.00057 35.4 0.4 29 1056-1084 59-90 (116)
114 1x61_A Thyroid receptor intera 25.2 16 0.00055 31.1 0.2 38 1117-1157 6-43 (72)
115 1vq8_Z 50S ribosomal protein L 24.7 18 0.0006 33.2 0.4 30 1056-1085 26-58 (83)
116 1tac_A TAT protein; transcript 24.6 41 0.0014 30.9 2.7 23 1059-1092 26-48 (86)
117 2ajj_A NS5A, nonstructural pro 24.4 67 0.0023 23.8 3.2 21 644-664 4-24 (28)
118 2fiy_A Protein FDHE homolog; F 24.1 33 0.0011 38.5 2.4 13 940-952 152-164 (309)
119 3j20_Y 30S ribosomal protein S 23.9 22 0.00075 29.5 0.8 9 1090-1098 36-44 (50)
120 3u5c_f 40S ribosomal protein S 23.9 36 0.0012 34.2 2.5 59 978-1065 83-146 (152)
121 2l3k_A Rhombotin-2, linker, LI 23.8 16 0.00056 34.8 -0.0 37 1118-1157 10-46 (123)
122 2hmq_A Hemerythrin; oxygen tra 23.5 1.3E+02 0.0044 28.3 6.2 55 403-461 44-102 (113)
123 4a17_Y RPL37A, 60S ribosomal p 23.2 20 0.00067 34.2 0.4 10 1071-1080 53-62 (103)
124 2kwj_A Zinc finger protein DPF 22.9 79 0.0027 30.0 4.6 74 1010-1101 4-83 (114)
125 3ask_A E3 ubiquitin-protein li 22.5 1.2E+02 0.0041 32.6 6.3 47 1018-1078 149-195 (226)
126 1iml_A CRIP, cysteine rich int 22.5 15 0.0005 31.9 -0.6 35 1118-1156 2-36 (76)
127 2xqn_T Testin, TESS; metal-bin 22.5 18 0.0006 34.4 -0.1 38 1117-1157 64-103 (126)
128 1x63_A Skeletal muscle LIM-pro 22.4 20 0.00069 31.3 0.3 38 1117-1157 16-53 (82)
129 1g47_A Pinch protein; LIM doma 22.2 21 0.00071 30.8 0.3 39 1116-1157 11-49 (77)
130 1pft_A TFIIB, PFTFIIBN; N-term 22.0 24 0.00083 28.7 0.7 14 1066-1079 18-31 (50)
131 2rgt_A Fusion of LIM/homeobox 21.9 21 0.00073 35.8 0.4 38 1117-1157 66-103 (169)
132 3j21_i 50S ribosomal protein L 21.7 23 0.00077 32.6 0.4 9 1091-1099 53-61 (83)
133 3shb_A E3 ubiquitin-protein li 21.7 73 0.0025 28.6 3.7 71 976-1064 4-75 (77)
134 3f6q_B LIM and senescent cell 21.6 17 0.00057 30.7 -0.4 39 1116-1157 11-49 (72)
135 2lli_A Protein AIR2; RNA surve 20.5 2E+02 0.0068 27.4 6.9 18 1030-1047 43-60 (124)
No 1
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=100.00 E-value=7.9e-50 Score=396.41 Aligned_cols=138 Identities=45% Similarity=1.056 Sum_probs=132.7
Q ss_pred CCCCCcccccccccCcccccccccccccccCCcccChhhhcccCCCCCcccccCceecccccccccCCCCCCCCCCCCcc
Q 001072 975 GCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLS 1054 (1164)
Q Consensus 975 ~~~~~~~~~~~~~~gC~HY~r~c~l~~~cC~k~y~Cr~CHde~~~H~~~r~~~~~~~C~~C~~~Q~~~~~C~~~~C~~~~ 1054 (1164)
|..|+|+|++++++||+||+|+|+|+||||+||||||+||||.++|+++|+.+++|+||.|+++||+++.|.+ | |..
T Consensus 4 ~~~~~~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~~dH~l~r~~~~~vlCg~C~~~q~~~~~C~~--C-g~~ 80 (143)
T 2dkt_A 4 GSSGGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTCED--C-STL 80 (143)
T ss_dssp CCCCCCCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTSSSCCCSSSCCCEEESSSCCEECSCSBCSS--S-CCB
T ss_pred CCCCcccccccCcCCCcccCCCeeEECCCCCCccchhhhhccccccccchhccceeeecccCccccccCcCCC--C-Ccc
Confidence 5578999999999999999999999999999999999999999999999999999999999999999999988 5 999
Q ss_pred cceEeccccccccCCCCcccCCCCCcccccCCCCcceeecccccccccccc-cccccccCCcCC
Q 001072 1055 MAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKL-VDHKCREKGLET 1117 (1164)
Q Consensus 1055 ~a~y~C~~C~l~d~~k~~yHC~~CgiCR~g~gl~~~~fHC~~C~~C~~~~~-~~H~C~e~~~~~ 1117 (1164)
|++|||+||||||++|+||||++|||||+|+ |+|||||++||+||++++ ++|+|+|+++++
T Consensus 81 f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~--~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s 142 (143)
T 2dkt_A 81 FGEYYCSICHLFDKDKRQYHCESCGICRIGP--KEDFFHCLKCNLCLTTNLRGKHKCIESGPSS 142 (143)
T ss_dssp SCSEECSSSCCEECSSSEEEETTTTEEEESC--GGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred ceeeEeceeecccCCCceecCCCCCceeccC--CcCcEECCcCCeeeccccCcCcccCccCccC
Confidence 9999999999999889999999999999997 599999999999999999 899999999875
No 2
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis}
Probab=99.53 E-value=6.2e-14 Score=143.61 Aligned_cols=149 Identities=13% Similarity=0.094 Sum_probs=120.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcccccccchhHHhhh---hhhHHH
Q 001072 41 KSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRV---KNIART 117 (1164)
Q Consensus 41 ~~pid~~~~iHkAlRrEL~~L~~~~~~~~~~~~d~~~~~~l~~r~~~l~~~l~~Hh~~EDe~ifPaL~~R~---~~v~~~ 117 (1164)
+.||+.+..-|+.+|+.|..|.+.+..+.....++.....++.-+.+|+..+..||..|++++||+|..+. .+++.+
T Consensus 15 ~~~i~~L~~~H~~i~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Hh~~EE~~lfP~l~~~~~~~~~~i~~ 94 (172)
T 2p0n_A 15 AEPIEMLYACHGKVRRFCGQVAMLSDYIAENGCNQIVLQTIRQIAQYFNVAAPLHHEDEEENFFPLLLQYAPQAQESVDE 94 (172)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCGGGHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHChhHHHHhhHHHHhhCchhhHHHHH
Confidence 34999999999999999999988877654311333344677888999999999999999999999998863 467899
Q ss_pred HHHhhhhHHHHHHHHHHHHhhhccCch--HHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhCCHHHHHHHHHhHhc
Q 001072 118 YSLEHEGESVLFDQLFELLNSSMRNEE--SYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLC 194 (1164)
Q Consensus 118 ~~~EH~~i~~l~~~L~~~L~~~~~~~~--~~~~eLa~~~~~l~t~L~~HL~~EEeqvlPLL~~~fS~~Eqa~L~~~~~~ 194 (1164)
|..||..+..++++|.+.+..+..+.. .....| ..+.+.+.+|+++||. +||.+.+.+|.++|.+|+.++..
T Consensus 95 l~~EH~~~~~~l~~l~~~l~~~~~~~~~~~~~~~l----~~~~~~l~~Hi~~EE~-lfP~a~~~L~~~~~~~l~~~~~~ 168 (172)
T 2p0n_A 95 LLRQHIGLHDNWAAVSAEFAKLEADNAYVPDEEAF----KRFVAGYDVHLAIEEP-LFDMGNTFIPKEKLTEIGEIMAA 168 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCCCCHHHH----HHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcccHHHH----HHHHHHHHHHHHHHHH-HHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999988877653321 111334 4444779999999999 99999999999999999998753
No 3
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis}
Probab=99.47 E-value=7.4e-13 Score=135.63 Aligned_cols=145 Identities=14% Similarity=0.158 Sum_probs=120.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhhcccCC-cccHHHHHHHHHHHHHHhhhhhhcccccchhhhhhhh--------h
Q 001072 291 SCPIDEIMLWHNAIKRELNDIAEAARKIQLSGD-FSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVEL--------S 361 (1164)
Q Consensus 291 ~~Pid~L~~~HkALRrEL~~L~~~a~~i~~~gd-~~~L~~L~~r~~fL~~vL~~Hs~aEDevlFPaL~~r~--------~ 361 (1164)
..||+.|...|+.||+.+..|...+..+...|. ...+..++.-+.+|...+..||..||++|||+|..+. .
T Consensus 15 ~~~i~~L~~~H~~i~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Hh~~EE~~lfP~l~~~~~~~~~~i~~ 94 (172)
T 2p0n_A 15 AEPIEMLYACHGKVRRFCGQVAMLSDYIAENGCNQIVLQTIRQIAQYFNVAAPLHHEDEEENFFPLLLQYAPQAQESVDE 94 (172)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCGGGHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHChhHHHHhhHHHHhhCchhhHHHHH
Confidence 569999999999999999999988877653332 2234678888999999999999999999999997642 7
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 001072 362 FAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQS 441 (1164)
Q Consensus 362 me~EH~~ie~l~e~L~~ll~~l~~a~~~s~~~~~~~eLa~~le~L~~~L~~Hf~kEE~qvfPLl~~~fS~eEq~eL~~~~ 441 (1164)
|..||..+...++.|...+..+........ .+..+..+.+.+..|+.+||+ +||++.+.+|.++|.+|..++
T Consensus 95 l~~EH~~~~~~l~~l~~~l~~~~~~~~~~~-------~~~~l~~~~~~l~~Hi~~EE~-lfP~a~~~L~~~~~~~l~~~~ 166 (172)
T 2p0n_A 95 LLRQHIGLHDNWAAVSAEFAKLEADNAYVP-------DEEAFKRFVAGYDVHLAIEEP-LFDMGNTFIPKEKLTEIGEIM 166 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCCC-------CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcc-------cHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCHHHHHHHHHHH
Confidence 889999999999999998877754432111 125567778899999999999 999999999999999999877
Q ss_pred hh
Q 001072 442 LC 443 (1164)
Q Consensus 442 l~ 443 (1164)
..
T Consensus 167 ~~ 168 (172)
T 2p0n_A 167 AA 168 (172)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 4
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=99.24 E-value=6.1e-11 Score=135.42 Aligned_cols=149 Identities=15% Similarity=0.163 Sum_probs=124.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhhcccCC----cccHHHHHHHHHHHHHHhhhhhhcccccchhhhhhhh------
Q 001072 291 SCPIDEIMLWHNAIKRELNDIAEAARKIQLSGD----FSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVEL------ 360 (1164)
Q Consensus 291 ~~Pid~L~~~HkALRrEL~~L~~~a~~i~~~gd----~~~L~~L~~r~~fL~~vL~~Hs~aEDevlFPaL~~r~------ 360 (1164)
-+|++.|...|+.|++.|..|...+.++..... ...+..+.+-+.+|.++-..|+..|+.+|||+|..+-
T Consensus 8 ghpi~~l~~EH~~i~~~l~~l~~~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~l~~~H~~kEE~~LFP~le~~g~~~p~~ 87 (369)
T 3cax_A 8 GHPLKTLYQENKEIMKDAEMLNLYAKTLATTKDERMREEILGVLEEIVSSLRMVGFTHYNREEMLIFPYIERRGLTVIAT 87 (369)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHTHHHHHTTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHhhhhhHhhhhHHHHHhCCCCCCc
Confidence 569999999999999999999999999864332 2467889999999976443888888889999997542
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 001072 361 SFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQ 440 (1164)
Q Consensus 361 ~me~EH~~ie~l~e~L~~ll~~l~~a~~~s~~~~~~~eLa~~le~L~~~L~~Hf~kEE~qvfPLl~~~fS~eEq~eL~~~ 440 (1164)
.|..||+++..++..+..++..... . .. .+.+..+...+..+...+.+|+.+||+.|||++.+.||.++|.++..+
T Consensus 88 vM~~eHd~~r~~l~~l~~~~~~~~~-~--~~-~~~~~~~~~~l~~~~~~l~~Hi~kEe~iLfP~a~~~ls~~dw~~i~~~ 163 (369)
T 3cax_A 88 VLWTKHDEIRAMIKQLAELLRKREE-M--PW-EEFVEKFKAKAGEVAFALSDMVFRENNIFYPTLKALLSEGEWKAIKMQ 163 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGG-S--CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHHhcccc-c--ch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 7999999999999999999965331 1 11 244678888899999999999999999999999999999999999875
Q ss_pred Hhh
Q 001072 441 SLC 443 (1164)
Q Consensus 441 ~l~ 443 (1164)
+-.
T Consensus 164 ~~e 166 (369)
T 3cax_A 164 EDE 166 (369)
T ss_dssp GGG
T ss_pred Ccc
Confidence 543
No 5
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=99.01 E-value=3.1e-09 Score=121.35 Aligned_cols=149 Identities=23% Similarity=0.269 Sum_probs=123.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-----CchHHHHHHHHHHHHHHHH-HhhcccccccchhHHhh-hhh
Q 001072 41 KSPILIFLFFHKAIKSELDVLHRAAMAFATNLGG-----GGDINKLLERYHFFRAIYK-HHCNAEDEVIFPALDIR-VKN 113 (1164)
Q Consensus 41 ~~pid~~~~iHkAlRrEL~~L~~~~~~~~~~~~d-----~~~~~~l~~r~~~l~~~l~-~Hh~~EDe~ifPaL~~R-~~~ 113 (1164)
..||..|..=|+.+|+.|..|...+..+.. +. +.....+..-+..|.. +. .||.-|-.+|||.|+.+ ..+
T Consensus 8 ghpi~~l~~EH~~i~~~l~~l~~~~~~i~~--~~~~~~~~~~~~~l~~~~~~l~~-l~~~H~~kEE~~LFP~le~~g~~~ 84 (369)
T 3cax_A 8 GHPLKTLYQENKEIMKDAEMLNLYAKTLAT--TKDERMREEILGVLEEIVSSLRM-VGFTHYNREEMLIFPYIERRGLTV 84 (369)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHTH-HHHTHHHHHHHHTHHHHHTTTCHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchHHHHHHHHHHHHHHH-HHHHhhhhhHhhhhHHHHHhCCCC
Confidence 459999999999999999999999998765 33 2567888888888866 55 67777777999999655 567
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHhhhccCc-hHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhCCHHHHHHHHHhH
Q 001072 114 IARTYSLEHEGESVLFDQLFELLNSSMRNE-ESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQF 192 (1164)
Q Consensus 114 v~~~~~~EH~~i~~l~~~L~~~L~~~~~~~-~~~~~eLa~~~~~l~t~L~~HL~~EEeqvlPLL~~~fS~~Eqa~L~~~~ 192 (1164)
.+..|..||..+..++.++..+++.....+ ...++.+...+.++...|.+|+.+||.-+||.+.+.||.++|..|..++
T Consensus 85 p~~vM~~eHd~~r~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~Hi~kEe~iLfP~a~~~ls~~dw~~i~~~~ 164 (369)
T 3cax_A 85 IATVLWTKHDEIRAMIKQLAELLRKREEMPWEEFVEKFKAKAGEVAFALSDMVFRENNIFYPTLKALLSEGEWKAIKMQE 164 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHG
T ss_pred CCchHHHHhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 889999999999999999999998865333 2335556666666668899999999999999999999999999887754
No 6
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.05 E-value=1.1e-06 Score=72.76 Aligned_cols=44 Identities=32% Similarity=0.794 Sum_probs=38.7
Q ss_pred CcCCCCcccccccccccCcccccCCCccccHhhHhh-------hhhhhhhh
Q 001072 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV-------CSVLCFAF 1157 (1164)
Q Consensus 1114 ~~~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~-------~~~~~~~~ 1157 (1164)
..+..||||++.+.++...+..++|||..|..|+.. ||+|++.+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 456789999999998888889999999999999975 99998764
No 7
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.70 E-value=1.4e-05 Score=70.27 Aligned_cols=47 Identities=21% Similarity=0.567 Sum_probs=37.5
Q ss_pred ccCCcCCCCcccccccccccCcccccCCCccccHhhHhh-------hhhhhhhhh
Q 001072 1111 REKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV-------CSVLCFAFF 1158 (1164)
Q Consensus 1111 ~e~~~~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~-------~~~~~~~~~ 1158 (1164)
.+...+..||||++.+- ....+..+||||..|..|+.. ||+|++.|.
T Consensus 10 ~~~~~~~~C~IC~~~~~-~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFK-PRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CCCCCSCBCSSSCCBCC-SSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred ccCCCCCCCcCCCcccC-CCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 34455788999999854 445567789999999999975 999998764
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.66 E-value=1.4e-05 Score=72.34 Aligned_cols=44 Identities=18% Similarity=0.330 Sum_probs=36.1
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHhh-------hhhhhhhhhc
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV-------CSVLCFAFFF 1159 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~-------~~~~~~~~~~ 1159 (1164)
+..||||++........+..++|||..|..|... ||+|++.+.+
T Consensus 26 ~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 26 MDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp TSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred hccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 5679999988877666556567999999999985 9999998754
No 9
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.59 E-value=2.4e-05 Score=67.89 Aligned_cols=45 Identities=31% Similarity=0.674 Sum_probs=35.8
Q ss_pred CCcCCCCcccccccccccCcccccCCCccccHhhHhh-------hhhhhhhhh
Q 001072 1113 KGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV-------CSVLCFAFF 1158 (1164)
Q Consensus 1113 ~~~~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~-------~~~~~~~~~ 1158 (1164)
......||||++.+... ..+..+||||..|..|... ||+|++.+-
T Consensus 11 ~~~~~~C~IC~~~~~~~-~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEG-EDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp TTCCCSBTTTTBCCCSS-SCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCCCCCCeeCCccccCC-CcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 34567899999977543 4577799999999999975 999988653
No 10
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.50 E-value=2.3e-05 Score=64.90 Aligned_cols=42 Identities=29% Similarity=0.736 Sum_probs=34.2
Q ss_pred CCCCcccccccccccCcccccC-CCccccHhhHhh-------hhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALP-CGHFMHSDCFQV-------CSVLCFAFF 1158 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~-CGH~~H~~C~~~-------~~~~~~~~~ 1158 (1164)
...||||++.+.++.. +..++ |||..|..|... ||+|++.+.
T Consensus 5 ~~~C~IC~~~~~~~~~-~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELEDGEE-ARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSC-CEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCcCccCCccccCCCc-eEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4689999999876654 44465 999999999986 999998764
No 11
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.48 E-value=2.1e-05 Score=69.63 Aligned_cols=42 Identities=26% Similarity=0.557 Sum_probs=34.8
Q ss_pred cCCCCcccccccccccCcccccCCCccccHhhHhh-------hhhhhhhh
Q 001072 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV-------CSVLCFAF 1157 (1164)
Q Consensus 1115 ~~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~-------~~~~~~~~ 1157 (1164)
....||||++.+.. ...+..+||||..|..|... ||+|++.+
T Consensus 22 ~~~~C~IC~~~~~~-~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 70 (75)
T 1x4j_A 22 EQTLCVVCMCDFES-RQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADS 70 (75)
T ss_dssp SCCEETTTTEECCB-TCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCC
T ss_pred CCCCCeECCcccCC-CCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcC
Confidence 45689999998654 44677899999999999986 99998765
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.41 E-value=4e-05 Score=65.95 Aligned_cols=42 Identities=26% Similarity=0.583 Sum_probs=34.1
Q ss_pred CCCCcccccccccc---cCcccccCCCccccHhhHhh-------hhhhhhhh
Q 001072 1116 ETNCPICCDFLFTS---SATVRALPCGHFMHSDCFQV-------CSVLCFAF 1157 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts---~~~~~~l~CGH~~H~~C~~~-------~~~~~~~~ 1157 (1164)
...||||++.+.+. ...+..++|||..|..|+.. ||+|++.|
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 66 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCcc
Confidence 56899999988764 33346799999999999974 99998764
No 13
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.40 E-value=4.6e-05 Score=65.53 Aligned_cols=43 Identities=21% Similarity=0.475 Sum_probs=33.6
Q ss_pred CCCCccccc-ccccccCcccccCCCccccHhhHhh--------hhhhhhhhh
Q 001072 1116 ETNCPICCD-FLFTSSATVRALPCGHFMHSDCFQV--------CSVLCFAFF 1158 (1164)
Q Consensus 1116 ~~~CpiC~e-~lfts~~~~~~l~CGH~~H~~C~~~--------~~~~~~~~~ 1158 (1164)
+..||||++ ++.+....+..++|||..+..|... ||+|++.+-
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 467999999 5555544446689999999999864 899988753
No 14
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.39 E-value=5e-05 Score=65.98 Aligned_cols=44 Identities=25% Similarity=0.500 Sum_probs=35.7
Q ss_pred cCCCCcccccccccc---cCcccccCCCccccHhhHhh-------hhhhhhhhh
Q 001072 1115 LETNCPICCDFLFTS---SATVRALPCGHFMHSDCFQV-------CSVLCFAFF 1158 (1164)
Q Consensus 1115 ~~~~CpiC~e~lfts---~~~~~~l~CGH~~H~~C~~~-------~~~~~~~~~ 1158 (1164)
....||||++.+.+. ...+..++|||..|..|... ||+|++.+-
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence 456899999998764 24447799999999999974 999998764
No 15
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.39 E-value=4.5e-05 Score=72.60 Aligned_cols=44 Identities=27% Similarity=0.461 Sum_probs=34.0
Q ss_pred cCCCCccccccccccc--------------CcccccCCCccccHhhHh------------hhhhhhhhhh
Q 001072 1115 LETNCPICCDFLFTSS--------------ATVRALPCGHFMHSDCFQ------------VCSVLCFAFF 1158 (1164)
Q Consensus 1115 ~~~~CpiC~e~lfts~--------------~~~~~l~CGH~~H~~C~~------------~~~~~~~~~~ 1158 (1164)
.+..||||++++.... ..+..++|||..|..|.. .||+|+..|.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 4568999999986532 234478999999999975 4999987653
No 16
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.37 E-value=4.3e-05 Score=70.50 Aligned_cols=42 Identities=36% Similarity=0.913 Sum_probs=34.9
Q ss_pred cCCCCcccccccccccCcccccCCCccccHhhHhh-------hhhhhhhh
Q 001072 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV-------CSVLCFAF 1157 (1164)
Q Consensus 1115 ~~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~-------~~~~~~~~ 1157 (1164)
.+..||||++.+.... .+..+||||..|..|... ||+|++.+
T Consensus 39 ~~~~C~IC~~~~~~~~-~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGD-VATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 87 (91)
T ss_dssp SCSEETTTTEECCTTC-EEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBS
T ss_pred CCCCCcccChhhcCCC-cEEecCCCChHHHHHHHHHHHcCCcCcCcCccC
Confidence 4567999999876654 466799999999999986 99999865
No 17
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.36 E-value=5.7e-05 Score=64.03 Aligned_cols=43 Identities=26% Similarity=0.531 Sum_probs=34.8
Q ss_pred CCCCcccccccccc---cCcccccCCCccccHhhHhh-------hhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTS---SATVRALPCGHFMHSDCFQV-------CSVLCFAFF 1158 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts---~~~~~~l~CGH~~H~~C~~~-------~~~~~~~~~ 1158 (1164)
...||||++.+.+. ...+..++|||..|..|... ||+|++.+-
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 46799999998763 34457789999999999974 999988653
No 18
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.30 E-value=5.6e-05 Score=67.14 Aligned_cols=42 Identities=31% Similarity=0.735 Sum_probs=34.3
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHhh-------hhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV-------CSVLCFAFF 1158 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~-------~~~~~~~~~ 1158 (1164)
...||||++.+-. ...+..++|||..|..|... ||+|++.+.
T Consensus 15 ~~~C~IC~~~~~~-~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 15 GLECPVCKEDYAL-GESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp SCCCTTTTSCCCT-TSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred CCCCeeCCccccC-CCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 5689999998654 34567789999999999975 999998764
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.28 E-value=8.7e-05 Score=66.99 Aligned_cols=43 Identities=23% Similarity=0.549 Sum_probs=35.5
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHh----------hhhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQ----------VCSVLCFAFF 1158 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~----------~~~~~~~~~~ 1158 (1164)
...||||++.+-++....+.++|||.+|..|+. .||+|++.+-
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred CCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 467999999887776656778999999999985 4999998653
No 20
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.26 E-value=7.7e-05 Score=64.43 Aligned_cols=39 Identities=28% Similarity=0.532 Sum_probs=32.7
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHhh-------hhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV-------CSVLCFAF 1157 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~-------~~~~~~~~ 1157 (1164)
...||||++.+- .++..+||||..|..|... ||+|++.+
T Consensus 5 ~~~C~IC~~~~~---~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 50 (68)
T 1chc_A 5 AERCPICLEDPS---NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50 (68)
T ss_dssp CCCCSSCCSCCC---SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCC
T ss_pred CCCCeeCCcccc---CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhh
Confidence 568999999864 3457899999999999975 99998765
No 21
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.18 E-value=0.00014 Score=63.28 Aligned_cols=38 Identities=29% Similarity=0.627 Sum_probs=32.1
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHhh-------hhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV-------CSVLCFAFF 1158 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~-------~~~~~~~~~ 1158 (1164)
...||||++.+.+ +.+||||..|..|... ||+|++.+-
T Consensus 15 ~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 15 EEECCICMDGRAD-----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred CCCCeeCCcCccC-----cccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 5689999998755 6689999999999964 999998753
No 22
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.12 E-value=0.00016 Score=65.34 Aligned_cols=41 Identities=22% Similarity=0.612 Sum_probs=31.3
Q ss_pred CCCCcccccccccccCcccccC--CCccccHhhHhh--------hhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALP--CGHFMHSDCFQV--------CSVLCFAFF 1158 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~--CGH~~H~~C~~~--------~~~~~~~~~ 1158 (1164)
+..||||+|.+ +..+..++| |||.+...|+.. ||+|++.+-
T Consensus 11 ~~~CpICle~~--~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 11 PVECPLCMEPL--EIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp CCBCTTTCCBC--CTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred CCcCCccCccC--ccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 56899999966 223345555 999999999864 999998753
No 23
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.06 E-value=0.00018 Score=63.02 Aligned_cols=39 Identities=23% Similarity=0.508 Sum_probs=31.7
Q ss_pred cCCCCcccccccccccCcccccCCCccccHhhHhh-------hhhhhhhh
Q 001072 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV-------CSVLCFAF 1157 (1164)
Q Consensus 1115 ~~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~-------~~~~~~~~ 1157 (1164)
....||||++.+.+ .+.+||||..|..|+.. ||+|++.+
T Consensus 14 ~~~~C~IC~~~~~~----~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (71)
T 2d8t_A 14 TVPECAICLQTCVH----PVSLPCKHVFCYLCVKGASWLGKRCALCRQEI 59 (71)
T ss_dssp SCCBCSSSSSBCSS----EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBC
T ss_pred CCCCCccCCcccCC----CEEccCCCHHHHHHHHHHHHCCCcCcCcCchh
Confidence 34679999998743 34579999999999975 99998865
No 24
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.06 E-value=0.00016 Score=69.24 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=33.5
Q ss_pred CCCCcccccccccccC---cccccCCCccccHhhHhh-------hhhhhhhhhc
Q 001072 1116 ETNCPICCDFLFTSSA---TVRALPCGHFMHSDCFQV-------CSVLCFAFFF 1159 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~---~~~~l~CGH~~H~~C~~~-------~~~~~~~~~~ 1159 (1164)
+..||+|.++..++.. ++..++|||..|..|... ||+|++.+-|
T Consensus 48 ~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 48 MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp TSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred hCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 4578888876654332 356789999999999986 9999998654
No 25
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.94 E-value=0.00023 Score=62.40 Aligned_cols=39 Identities=21% Similarity=0.473 Sum_probs=32.4
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHhh-------hhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV-------CSVLCFAF 1157 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~-------~~~~~~~~ 1157 (1164)
...||||++.+.+ |+...+|||..|..|... ||+|++.+
T Consensus 15 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (72)
T 2djb_A 15 YILCSICKGYLID---ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVV 60 (72)
T ss_dssp GGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCC
T ss_pred CCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHcCCcCCCcCccc
Confidence 4679999998765 566669999999999964 99998865
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.88 E-value=0.00025 Score=70.15 Aligned_cols=37 Identities=24% Similarity=0.647 Sum_probs=30.6
Q ss_pred CCCcccccccccccCcccccCCCccccHhhHhh-------hhhhhhhh
Q 001072 1117 TNCPICCDFLFTSSATVRALPCGHFMHSDCFQV-------CSVLCFAF 1157 (1164)
Q Consensus 1117 ~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~-------~~~~~~~~ 1157 (1164)
-.||||++.+.+ | +.+||||..|..|... ||+|++.+
T Consensus 54 ~~C~iC~~~~~~---~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 97 (138)
T 4ayc_A 54 LQCIICSEYFIE---A-VTLNCAHSFCSYCINEWMKRKIECPICRKDI 97 (138)
T ss_dssp SBCTTTCSBCSS---E-EEETTSCEEEHHHHHHHTTTCSBCTTTCCBC
T ss_pred CCCcccCcccCC---c-eECCCCCCccHHHHHHHHHcCCcCCCCCCcC
Confidence 359999998754 3 4589999999999875 99998765
No 27
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.86 E-value=0.00035 Score=62.56 Aligned_cols=38 Identities=21% Similarity=0.445 Sum_probs=31.4
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHhh-------hhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV-------CSVLCFAF 1157 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~-------~~~~~~~~ 1157 (1164)
...||||++.+.+ |+ .++|||..|..|+.. ||+|++.+
T Consensus 15 ~~~C~IC~~~~~~---p~-~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (81)
T 2csy_A 15 PFRCFICRQAFQN---PV-VTKCRHYFCESCALEHFRATPRCYICDQPT 59 (81)
T ss_dssp CSBCSSSCSBCCS---EE-ECTTSCEEEHHHHHHHHHHCSBCSSSCCBC
T ss_pred CCCCcCCCchhcC---ee-EccCCCHhHHHHHHHHHHCCCcCCCcCccc
Confidence 4579999998744 44 489999999999965 99999876
No 28
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=96.69 E-value=0.00045 Score=64.19 Aligned_cols=40 Identities=23% Similarity=0.565 Sum_probs=32.3
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHhh-------hhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV-------CSVLCFAFF 1158 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~-------~~~~~~~~~ 1158 (1164)
.-.||||++.+.+ |+...+|||..|..|... ||+|++.+-
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 22 LLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp HTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 3579999988764 555569999999999864 999987653
No 29
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.62 E-value=0.00064 Score=58.50 Aligned_cols=38 Identities=21% Similarity=0.530 Sum_probs=30.5
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHhh--------hhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV--------CSVLCFAF 1157 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~--------~~~~~~~~ 1157 (1164)
...||||++.+-+ |+. ++|||..|..|... ||+|++.+
T Consensus 15 ~~~C~IC~~~~~~---p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 15 KYKCEKCHLVLCS---PKQ-TECGHRFCESCMAALLSSSSPKCTACQESI 60 (66)
T ss_dssp CEECTTTCCEESS---CCC-CSSSCCCCHHHHHHHHTTSSCCCTTTCCCC
T ss_pred CCCCCCCChHhcC---eeE-CCCCCHHHHHHHHHHHHhCcCCCCCCCcCC
Confidence 4579999988643 444 79999999999973 99998765
No 30
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.55 E-value=0.00064 Score=64.24 Aligned_cols=40 Identities=15% Similarity=0.492 Sum_probs=32.7
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHhh-------hhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV-------CSVLCFAFF 1158 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~-------~~~~~~~~~ 1158 (1164)
+-.||||++.+.+ |+..++|||..|..|... ||+|++.+.
T Consensus 15 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 15 HLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp GTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred cCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 4579999988754 666669999999999964 999988754
No 31
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.53 E-value=0.0007 Score=59.03 Aligned_cols=38 Identities=32% Similarity=0.709 Sum_probs=30.4
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHh----------hhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQ----------VCSVLCFAF 1157 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~----------~~~~~~~~~ 1157 (1164)
...||||++.+-+ + +.++|||..|..|.. .||+|++.+
T Consensus 20 ~~~C~IC~~~~~~---~-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 20 EVICPICLDILQK---P-VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67 (73)
T ss_dssp CCBCTTTCSBCSS---E-EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCC
T ss_pred CCEeccCCcccCC---e-EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcC
Confidence 5689999997653 3 346999999999986 399998765
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=96.50 E-value=0.00071 Score=63.36 Aligned_cols=40 Identities=18% Similarity=0.320 Sum_probs=33.0
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHh--------hhhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQ--------VCSVLCFAFF 1158 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~--------~~~~~~~~~~ 1158 (1164)
.-.||||++.+.+ |+..++|||..|..|.. .||+|++.+-
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 22 VFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 3579999998753 66669999999999995 4999998763
No 33
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.48 E-value=0.00071 Score=68.68 Aligned_cols=38 Identities=32% Similarity=0.633 Sum_probs=31.8
Q ss_pred CCCcccccccccccCcccccCCCccccHhhHhh--------hhhhhhhh
Q 001072 1117 TNCPICCDFLFTSSATVRALPCGHFMHSDCFQV--------CSVLCFAF 1157 (1164)
Q Consensus 1117 ~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~--------~~~~~~~~ 1157 (1164)
..||||++.+.+ |+..++|||..|..|... ||+|+..+
T Consensus 55 ~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 55 LMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp HBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 479999988764 566679999999999864 99999765
No 34
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.44 E-value=0.00055 Score=66.68 Aligned_cols=43 Identities=28% Similarity=0.562 Sum_probs=0.0
Q ss_pred CCCcccccccccc--------------cCcccccCCCccccHhhHhh-------hhhhhhhhhc
Q 001072 1117 TNCPICCDFLFTS--------------SATVRALPCGHFMHSDCFQV-------CSVLCFAFFF 1159 (1164)
Q Consensus 1117 ~~CpiC~e~lfts--------------~~~~~~l~CGH~~H~~C~~~-------~~~~~~~~~~ 1159 (1164)
.+|+||++.+-.. ..++..++|||..|..|... ||+|++.+-|
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 5677777666432 11344579999999999976 9999998654
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.42 E-value=0.00089 Score=64.39 Aligned_cols=43 Identities=26% Similarity=0.546 Sum_probs=34.7
Q ss_pred CCCCcccccccccc---cCcccccCCCccccHhhHhh-------hhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTS---SATVRALPCGHFMHSDCFQV-------CSVLCFAFF 1158 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts---~~~~~~l~CGH~~H~~C~~~-------~~~~~~~~~ 1158 (1164)
.-.||||++.+-+. ...+..++|||..|..|... ||+|++.+-
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence 46799999987654 34457799999999999975 999998753
No 36
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=96.41 E-value=0.00062 Score=60.22 Aligned_cols=39 Identities=33% Similarity=0.853 Sum_probs=31.0
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHh--------------hhhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQ--------------VCSVLCFAFF 1158 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~--------------~~~~~~~~~~ 1158 (1164)
...||||++.+-+ |+ .+||||..+..|.. .||+|++.+-
T Consensus 12 ~~~C~IC~~~~~~---p~-~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 12 EVTCPICLELLTE---PL-SLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCEETTTTEECSS---CC-CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred CCCCcCCCcccCC---ee-ECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 4679999998643 33 47999999999997 3999988764
No 37
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.33 E-value=0.0011 Score=58.96 Aligned_cols=39 Identities=31% Similarity=0.749 Sum_probs=31.1
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHhh-------------hhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV-------------CSVLCFAFF 1158 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~-------------~~~~~~~~~ 1158 (1164)
...||||++.+.+ |+ .++|||..|..|+.. ||+|++.+-
T Consensus 19 ~~~C~IC~~~~~~---p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 19 EVTCPICLELLKE---PV-SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TTSCTTTCSCCSS---CE-ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CCCCcCCChhhCc---ce-eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 4679999988643 33 589999999999864 999987654
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.32 E-value=0.0011 Score=64.23 Aligned_cols=37 Identities=22% Similarity=0.688 Sum_probs=30.5
Q ss_pred CCCcccccccccccCcccccCCCccccHhhHh--------hhhhhhhhh
Q 001072 1117 TNCPICCDFLFTSSATVRALPCGHFMHSDCFQ--------VCSVLCFAF 1157 (1164)
Q Consensus 1117 ~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~--------~~~~~~~~~ 1157 (1164)
-.||||++.+.+ |+ .+||||..|..|.. .||+|++.+
T Consensus 53 ~~C~IC~~~~~~---p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 53 FQCICCQELVFR---PI-TTVCQHNVCKDCLDRSFRAQVFSCPACRYDL 97 (124)
T ss_dssp TBCTTTSSBCSS---EE-ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCCcCChHHcC---cE-EeeCCCcccHHHHHHHHhHCcCCCCCCCccC
Confidence 569999998774 33 36999999999995 599999876
No 39
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.30 E-value=0.0012 Score=58.69 Aligned_cols=39 Identities=33% Similarity=0.831 Sum_probs=31.0
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHhh-------------hhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV-------------CSVLCFAFF 1158 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~-------------~~~~~~~~~ 1158 (1164)
...||||.+.+-+ | +.++|||..|..|+.. ||+|++.+-
T Consensus 19 ~~~C~IC~~~~~~---p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 19 EVTCPICLELLTQ---P-LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCTTTCSCCSS---C-BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCCCCCCCcccCC---c-eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 4689999998643 3 3479999999999864 899987654
No 40
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=96.27 E-value=0.00099 Score=63.53 Aligned_cols=39 Identities=36% Similarity=0.780 Sum_probs=31.1
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHh--------hhhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQ--------VCSVLCFAFF 1158 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~--------~~~~~~~~~~ 1158 (1164)
+-.||||++.+.+ |+ .++|||..+..|+. .||+|++.+-
T Consensus 15 ~~~C~iC~~~~~~---p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILVE---PV-TLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCSS---CE-ECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCccCCcccCc---ee-EcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 3569999998764 33 46999999999985 4999998753
No 41
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.17 E-value=0.0018 Score=57.40 Aligned_cols=38 Identities=29% Similarity=0.711 Sum_probs=30.5
Q ss_pred CCCCcccccccccccCcccccCCCcc-ccHhhHhh---hhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHF-MHSDCFQV---CSVLCFAF 1157 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~-~H~~C~~~---~~~~~~~~ 1157 (1164)
...||||++.+- .++.+||||. ....|... ||+|++.+
T Consensus 25 ~~~C~IC~~~~~----~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i 66 (75)
T 2ecg_A 25 EKLCKICMDRNI----AIVFVPCGHLVTCKQCAEAVDKCPMCYTVI 66 (75)
T ss_dssp HHSCSSSCSSCC----CBCCSSSCCCCBCHHHHHHCSBCTTTCCBC
T ss_pred CCCCCcCCCCCC----CEEEecCCCHHHHHHHhhCCCCCccCCcee
Confidence 357999998753 2456899999 99999975 99998754
No 42
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=96.11 E-value=0.0015 Score=57.89 Aligned_cols=38 Identities=29% Similarity=0.696 Sum_probs=31.2
Q ss_pred CCCCcccccccccccCcccccCCCcc-ccHhhHh---hhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHF-MHSDCFQ---VCSVLCFAF 1157 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~-~H~~C~~---~~~~~~~~~ 1157 (1164)
+..||||++.+.+ ...+||||. ....|.. .||+|++.+
T Consensus 24 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i 65 (74)
T 4ic3_A 24 EKLCKICMDRNIA----IVFVPCGHLVTCKQCAEAVDKCPMCYTVI 65 (74)
T ss_dssp HTBCTTTSSSBCC----EEEETTCCBCCCHHHHTTCSBCTTTCCBC
T ss_pred CCCCCCCCCCCCC----EEEcCCCChhHHHHhhhcCccCCCcCcCc
Confidence 4579999987654 456899999 9999996 599998765
No 43
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=96.10 E-value=0.0011 Score=58.50 Aligned_cols=38 Identities=29% Similarity=0.648 Sum_probs=30.6
Q ss_pred CCCCcccccccccccCcccccC-CCccccHhhHh---------hhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALP-CGHFMHSDCFQ---------VCSVLCFAF 1157 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~-CGH~~H~~C~~---------~~~~~~~~~ 1157 (1164)
+..||||++.+.+ |+. ++ |||..|..|.. .||+|++.+
T Consensus 15 ~~~C~IC~~~~~~---p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 15 ELLCLICKDIMTD---AVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp GGSCSSSCCCCTT---CEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred CCCCcCCChHHhC---CeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 4679999988764 444 78 99999999984 499999864
No 44
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.05 E-value=0.0023 Score=53.09 Aligned_cols=30 Identities=27% Similarity=0.774 Sum_probs=24.5
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV 1149 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~ 1149 (1164)
...||||++.+-+ | +.++|||..|..|...
T Consensus 15 ~~~C~IC~~~~~~---p-~~~~CgH~fC~~Ci~~ 44 (58)
T 2ecj_A 15 EASCSVCLEYLKE---P-VIIECGHNFCKACITR 44 (58)
T ss_dssp CCBCSSSCCBCSS---C-CCCSSCCCCCHHHHHH
T ss_pred CCCCccCCcccCc---c-EeCCCCCccCHHHHHH
Confidence 4679999998754 3 3489999999999875
No 45
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.96 E-value=0.0017 Score=61.17 Aligned_cols=39 Identities=23% Similarity=0.554 Sum_probs=30.3
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHh----------hhhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQ----------VCSVLCFAFF 1158 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~----------~~~~~~~~~~ 1158 (1164)
...||||.+.+.+ |+. +||||..|..|.. .||+|++.+-
T Consensus 21 ~~~C~IC~~~~~~---p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLELIKE---PVS-TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCCCSS---CCB-CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChhhcC---eEE-CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 3579999987632 333 7999999999985 4999988653
No 46
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.95 E-value=0.0025 Score=54.17 Aligned_cols=30 Identities=40% Similarity=0.866 Sum_probs=23.9
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV 1149 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~ 1149 (1164)
+..||||++.+.+ |+ .++|||..|..|...
T Consensus 20 ~~~C~IC~~~~~~---p~-~~~CgH~fC~~Ci~~ 49 (63)
T 2ysj_A 20 EVICPICLDILQK---PV-TIDCGHNFCLKCITQ 49 (63)
T ss_dssp CCBCTTTCSBCSS---CE-ECTTSSEECHHHHHH
T ss_pred CCCCCcCCchhCC---eE-EeCCCCcchHHHHHH
Confidence 4679999987753 34 469999999999864
No 47
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.93 E-value=0.0015 Score=54.95 Aligned_cols=40 Identities=23% Similarity=0.445 Sum_probs=31.8
Q ss_pred cCCCCcccccccccccCcccccCCCccccHhhHh----hhhhhhhhhh
Q 001072 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQ----VCSVLCFAFF 1158 (1164)
Q Consensus 1115 ~~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~----~~~~~~~~~~ 1158 (1164)
..-.||||++.+-+ | +.+||||..+..|.. .||+|++.+-
T Consensus 5 ~~~~C~IC~~~~~~---p-~~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 5 QFLRCQQCQAEAKC---P-KLLPCLHTLCSGCLEASGMQCPICQAPWP 48 (56)
T ss_dssp CCSSCSSSCSSCBC---C-SCSTTSCCSBTTTCSSSSSSCSSCCSSSS
T ss_pred cCCCceEeCCccCC---e-EEcCCCCcccHHHHccCCCCCCcCCcEee
Confidence 45679999987653 3 568999999999974 5999998764
No 48
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.90 E-value=0.0028 Score=55.69 Aligned_cols=39 Identities=21% Similarity=0.487 Sum_probs=31.8
Q ss_pred cCCCCcccccccccccCcccccCCCcc-ccHhhHhh---hhhhhhhh
Q 001072 1115 LETNCPICCDFLFTSSATVRALPCGHF-MHSDCFQV---CSVLCFAF 1157 (1164)
Q Consensus 1115 ~~~~CpiC~e~lfts~~~~~~l~CGH~-~H~~C~~~---~~~~~~~~ 1157 (1164)
....|+||++.. ..+.++||||. +-..|... ||+|++.+
T Consensus 14 ~~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i 56 (68)
T 2ea5_A 14 NSKDCVVCQNGT----VNWVLLPCRHTCLCDGCVKYFQQCPMCRQFV 56 (68)
T ss_dssp CSSCCSSSSSSC----CCCEETTTTBCCSCTTHHHHCSSCTTTCCCC
T ss_pred CCCCCCCcCcCC----CCEEEECCCChhhhHHHHhcCCCCCCCCcch
Confidence 457899999854 34677999999 99999875 99998865
No 49
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=95.90 E-value=0.0022 Score=56.75 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=30.6
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHhh--------hhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV--------CSVLCFAF 1157 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~--------~~~~~~~~ 1157 (1164)
+-.||||++.+-+ ||. ++|||..+..|... ||+|++.+
T Consensus 8 ~~~C~IC~~~~~~---Pv~-~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~ 53 (78)
T 1t1h_A 8 YFRCPISLELMKD---PVI-VSTGQTYERSSIQKWLDAGHKTCPKSQETL 53 (78)
T ss_dssp SSSCTTTSCCCSS---EEE-ETTTEEEEHHHHHHHHTTTCCBCTTTCCBC
T ss_pred cCCCCCccccccC---CEE-cCCCCeecHHHHHHHHHHCcCCCCCCcCCC
Confidence 5679999997743 444 69999999999853 99998865
No 50
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=95.89 E-value=0.0036 Score=60.11 Aligned_cols=44 Identities=25% Similarity=0.500 Sum_probs=34.7
Q ss_pred cCCCCcccccccccc---cCcccccCCCccccHhhHhh-------hhhhhhhhh
Q 001072 1115 LETNCPICCDFLFTS---SATVRALPCGHFMHSDCFQV-------CSVLCFAFF 1158 (1164)
Q Consensus 1115 ~~~~CpiC~e~lfts---~~~~~~l~CGH~~H~~C~~~-------~~~~~~~~~ 1158 (1164)
....||||++.+-.. ......++|||..|..|... ||+|+..+-
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 456799999987653 23346789999999999975 999998763
No 51
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.70 E-value=0.0034 Score=57.08 Aligned_cols=44 Identities=27% Similarity=0.636 Sum_probs=34.1
Q ss_pred CcCCCCcccccccccccCcccccCCC-----ccccHhhHhh---------hhhhhhhhhc
Q 001072 1114 GLETNCPICCDFLFTSSATVRALPCG-----HFMHSDCFQV---------CSVLCFAFFF 1159 (1164)
Q Consensus 1114 ~~~~~CpiC~e~lfts~~~~~~l~CG-----H~~H~~C~~~---------~~~~~~~~~~ 1159 (1164)
.....|+||++.... ..++ ++||+ |+.|..|.+. ||+|.+.+.+
T Consensus 13 ~~~~~C~IC~~~~~~-~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDD-ESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCS-SSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccC-CCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 445789999987543 3344 68996 9999999964 9999988765
No 52
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=95.65 E-value=0.0027 Score=57.96 Aligned_cols=38 Identities=29% Similarity=0.666 Sum_probs=30.6
Q ss_pred CCCCcccccccccccCcccccC-CCccccHhhHh---------hhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALP-CGHFMHSDCFQ---------VCSVLCFAF 1157 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~-CGH~~H~~C~~---------~~~~~~~~~ 1157 (1164)
+-.||||++.+.+ |+ .+| |||..+..|.. .||+|++.+
T Consensus 13 ~~~C~IC~~~~~~---p~-~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 13 ELLCLICKDIMTD---AV-VIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTEETTTTEECSS---CE-ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCCCCCCChhhcC---ce-ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 4579999987753 44 478 99999999985 499999875
No 53
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=95.54 E-value=0.0034 Score=63.30 Aligned_cols=39 Identities=23% Similarity=0.520 Sum_probs=31.2
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHh--------hhhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQ--------VCSVLCFAFF 1158 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~--------~~~~~~~~~~ 1158 (1164)
.-.||||++.+.+ |+. +||||..+..|.. .||+|+..+-
T Consensus 78 ~~~C~IC~~~~~~---pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 78 SFMCVCCQELVYQ---PVT-TECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp HTBCTTTSSBCSS---EEE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCEeecCChhhcC---CEE-cCCCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 3579999997754 444 8999999999985 4999988754
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.37 E-value=0.003 Score=60.57 Aligned_cols=40 Identities=25% Similarity=0.487 Sum_probs=31.8
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHh-----hhhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQ-----VCSVLCFAFF 1158 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~-----~~~~~~~~~~ 1158 (1164)
+-.||||++.+.+ |+...+|||..+..|.. .||+|++.+.
T Consensus 22 ~~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCc
Confidence 4679999987743 55544999999999995 5999998764
No 55
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=95.35 E-value=0.0043 Score=59.59 Aligned_cols=40 Identities=33% Similarity=0.614 Sum_probs=31.7
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHh--------hhhhhhhhhhc
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQ--------VCSVLCFAFFF 1159 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~--------~~~~~~~~~~~ 1159 (1164)
.-.||||++.+.+ |+ .++|||..+..|+. .||+|++.+..
T Consensus 18 ~~~C~IC~~~~~~---p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 18 KYECPICLMALRE---AV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGBCTTTCSBCSS---EE-ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCcCChhhcC---eE-ECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 4579999988754 33 37999999999994 59999887643
No 56
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=95.34 E-value=0.005 Score=58.73 Aligned_cols=39 Identities=26% Similarity=0.630 Sum_probs=31.1
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHh--------hhhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQ--------VCSVLCFAFF 1158 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~--------~~~~~~~~~~ 1158 (1164)
.-.||||++.+.+ |+. ++|||..+..|.. .||+|++.+.
T Consensus 23 ~~~C~IC~~~~~~---p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 23 SISCQICEHILAD---PVE-TSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HTBCTTTCSBCSS---EEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCCCcHhcC---cEE-cCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 4579999988743 444 7999999999985 3999988754
No 57
>3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A
Probab=95.20 E-value=0.19 Score=49.88 Aligned_cols=146 Identities=21% Similarity=0.251 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHhhcccccccchhHHhhhhhhHHHHHHhhh
Q 001072 44 ILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHE 123 (1164)
Q Consensus 44 id~~~~iHkAlRrEL~~L~~~~~~~~~~~~d~~~~~~l~~r~~~l~~~l~~Hh~~EDe~ifPaL~~R~~~v~~~~~~EH~ 123 (1164)
+|+|..-|--+..-..+--.-+..+.- .+-++...|..-+..--.-++.|-.-|++.|--.|..|-..|..- .-|.
T Consensus 8 vdvF~~PH~RMKqlvg~y~ekLS~tnF--s~n~d~~~lL~sl~~tF~EfK~HEqIENe~I~~~LqqRs~tV~nv--Hsdn 83 (160)
T 3u9j_A 8 VDVFTAPHWRMKQLVGLYCDKLSKTNF--SNNNDFRALLQSLYATFKEFKMHEQIENEYIIGLLQQRSQTIYNV--HSDN 83 (160)
T ss_dssp GCSSHHHHHHHHHHHHHHHHHHHHCCT--TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCCCSSC--SCCT
T ss_pred cceeeccHHHHHHHHHHHHHHHhhccC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecc--cCcc
Confidence 456666664333322222222222222 334455666655555556678999999999999999993211110 1123
Q ss_pred hHHHHHHHHHHHHhhhccCch--HHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhCCHHHHHHHHHhHh
Q 001072 124 GESVLFDQLFELLNSSMRNEE--SYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFL 193 (1164)
Q Consensus 124 ~i~~l~~~L~~~L~~~~~~~~--~~~~eLa~~~~~l~t~L~~HL~~EEeqvlPLL~~~fS~~Eqa~L~~~~~ 193 (1164)
...+.+.-+...+.-....-+ .+..+|...+.+.-.-..-||..||+..=|+|.++||.+|+.+|-.+-+
T Consensus 84 kLsemL~L~~kG~~~vK~e~e~lny~~qLk~~l~~Ft~~flPhMkeEEEVFQPmLMeyFtyeELk~iK~~Vi 155 (160)
T 3u9j_A 84 KLSEMLSLFEKGLKNVKNEYEQLNYAKQLKERLEAFTRDFLPHMKEEEEVFQPMLMEYFTYEELKDIKKKVI 155 (160)
T ss_dssp THHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 334444444444444311111 3334444444444466899999999999999999999999998876655
No 58
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=94.90 E-value=0.0059 Score=52.60 Aligned_cols=42 Identities=17% Similarity=0.316 Sum_probs=30.9
Q ss_pred CcCCCCcccccccccccCcccccCCCcc-ccHhhHh-------hhhhhhhhh
Q 001072 1114 GLETNCPICCDFLFTSSATVRALPCGHF-MHSDCFQ-------VCSVLCFAF 1157 (1164)
Q Consensus 1114 ~~~~~CpiC~e~lfts~~~~~~l~CGH~-~H~~C~~-------~~~~~~~~~ 1157 (1164)
.....|+||++..-+.. +.++||||. +=..|.. .||+|++.+
T Consensus 5 ~~~~~C~IC~~~~~~~~--~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 54 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGN--IIHGRTGHLVTCFHCARRLKKAGASCPICKKEI 54 (63)
T ss_dssp GGGSBCTTTSSSBSCEE--EEETTEEEEEECHHHHHHHHHTTCBCTTTCCBC
T ss_pred CcCCCCcccCCcCCCeE--EEecCCCCHhHHHHHHHHHHHhCCcCCCcCchh
Confidence 34678999998654321 223599998 7899986 599999865
No 59
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=94.72 E-value=0.01 Score=68.45 Aligned_cols=39 Identities=28% Similarity=0.606 Sum_probs=31.3
Q ss_pred cCCCCcccccccccccCcccccCCCccccHhhHh--------hhhhhhhhh
Q 001072 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQ--------VCSVLCFAF 1157 (1164)
Q Consensus 1115 ~~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~--------~~~~~~~~~ 1157 (1164)
....||||++.+- .++.+||||..|..|.. .||+|+..+
T Consensus 331 ~~~~C~ICle~~~----~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i 377 (389)
T 2y1n_A 331 TFQLCKICAENDK----DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377 (389)
T ss_dssp SSSBCTTTSSSBC----CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCCccCcCCC----CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCcc
Confidence 3468999998873 34669999999999985 399999865
No 60
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=94.42 E-value=0.012 Score=53.13 Aligned_cols=38 Identities=26% Similarity=0.600 Sum_probs=30.2
Q ss_pred CCCCcccccccccccCcccccCCCcc-ccHhhHh---hhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHF-MHSDCFQ---VCSVLCFAF 1157 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~-~H~~C~~---~~~~~~~~~ 1157 (1164)
...|+||++..- .+.++||||. +=..|.. .||+|++.+
T Consensus 18 ~~~C~IC~~~~~----~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i 59 (79)
T 2yho_A 18 AMLCMVCCEEEI----NSTFCPCGHTVCCESCAAQLQSCPVCRSRV 59 (79)
T ss_dssp HTBCTTTSSSBC----CEEEETTCBCCBCHHHHTTCSBCTTTCCBC
T ss_pred CCEeEEeCcccC----cEEEECCCCHHHHHHHHHhcCcCCCCCchh
Confidence 357999998654 3567999999 7799987 499999865
No 61
>3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A
Probab=94.15 E-value=0.29 Score=48.54 Aligned_cols=145 Identities=11% Similarity=0.143 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHhhhhhhcccccchhhhhhhh--hhH-HhHHHHH
Q 001072 294 IDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVEL--SFA-QEHAEEE 370 (1164)
Q Consensus 294 id~L~~~HkALRrEL~~L~~~a~~i~~~gd~~~L~~L~~r~~fL~~vL~~Hs~aEDevlFPaL~~r~--~me-~EH~~ie 370 (1164)
+|.+..=|--++.-...--+.+.... -.+-.++..|..-+..--..++.|-.-|++.|--.|..|- .+. .-|....
T Consensus 8 vdvF~~PH~RMKqlvg~y~ekLS~tn-Fs~n~d~~~lL~sl~~tF~EfK~HEqIENe~I~~~LqqRs~tV~nvHsdnkLs 86 (160)
T 3u9j_A 8 VDVFTAPHWRMKQLVGLYCDKLSKTN-FSNNNDFRALLQSLYATFKEFKMHEQIENEYIIGLLQQRSQTIYNVHSDNKLS 86 (160)
T ss_dssp GCSSHHHHHHHHHHHHHHHHHHHHCC-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCCCSSCSCCTTHH
T ss_pred cceeeccHHHHHHHHHHHHHHHhhcc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecccCcchHH
Confidence 56666667666555555555555543 2233356555554444445578899999999999998884 110 1122223
Q ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhCCHHHHHHHHHHHh
Q 001072 371 IQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSL 442 (1164)
Q Consensus 371 ~l~e~L~~ll~~l~~a~~~s~~~~~~~eLa~~le~L~~~L~~Hf~kEE~qvfPLl~~~fS~eEq~eL~~~~l 442 (1164)
+.+.-|...+....+.. ....+..+|...+++.......||..||++-=||+.++||.+|...|-.+.+
T Consensus 87 emL~L~~kG~~~vK~e~---e~lny~~qLk~~l~~Ft~~flPhMkeEEEVFQPmLMeyFtyeELk~iK~~Vi 155 (160)
T 3u9j_A 87 EMLSLFEKGLKNVKNEY---EQLNYAKQLKERLEAFTRDFLPHMKEEEEVFQPMLMEYFTYEELKDIKKKVI 155 (160)
T ss_dssp HHHHHHHHHHHHCCSHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchHH---HHhhHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 33333333433221000 0145667888999999999999999999999999999999999998876654
No 62
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=94.09 E-value=0.013 Score=50.61 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=30.5
Q ss_pred ccCCcCCCCcccccccccccCccccc--CCCccc-cHhhHhh-------hhhhhhhh
Q 001072 1111 REKGLETNCPICCDFLFTSSATVRAL--PCGHFM-HSDCFQV-------CSVLCFAF 1157 (1164)
Q Consensus 1111 ~e~~~~~~CpiC~e~lfts~~~~~~l--~CGH~~-H~~C~~~-------~~~~~~~~ 1157 (1164)
+....+..|+||++..-+ +.++ ||||.. =..|... ||+|++.+
T Consensus 3 l~~~~~~~C~IC~~~~~~----~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i 55 (64)
T 2vje_A 3 LPLNAIEPCVICQGRPKN----GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPI 55 (64)
T ss_dssp --CGGGSCCTTTSSSCSC----EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCC
T ss_pred CCCCCcCCCCcCCCCCCC----EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcch
Confidence 344567789999986533 3344 999994 5888764 99999865
No 63
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=94.03 E-value=0.019 Score=57.33 Aligned_cols=39 Identities=23% Similarity=0.481 Sum_probs=31.6
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHhh--------hhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV--------CSVLCFAFF 1158 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~--------~~~~~~~~~ 1158 (1164)
+-.||||++.+.. |+. ++|||..+..|+.. ||+|++.+.
T Consensus 31 ~~~C~IC~~~~~~---pv~-~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 31 KYLCSACRNVLRR---PFQ-AQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGBCTTTCSBCSS---EEE-CTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CcCCCCCChhhcC---cEE-CCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 4579999998865 333 79999999999974 999998653
No 64
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.69 E-value=0.034 Score=49.94 Aligned_cols=40 Identities=25% Similarity=0.434 Sum_probs=31.0
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHh---------hhhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQ---------VCSVLCFAFF 1158 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~---------~~~~~~~~~~ 1158 (1164)
-.+|+||.+.+.. ......|||.+|..|+. .||.|...+-
T Consensus 15 i~~C~IC~~~i~~---g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSS---SEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHccc---CCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 3689999988763 23445999999999995 4999987654
No 65
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=92.50 E-value=0.026 Score=64.28 Aligned_cols=38 Identities=29% Similarity=0.711 Sum_probs=30.5
Q ss_pred CCCCcccccccccccCcccccCCCcc-ccHhhHh---hhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHF-MHSDCFQ---VCSVLCFAF 1157 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~-~H~~C~~---~~~~~~~~~ 1157 (1164)
+..||||++.+.+ ++.+||||. ....|.. .||+|+..+
T Consensus 295 ~~~C~IC~~~~~~----~v~lpCgH~~fC~~C~~~~~~CP~CR~~i 336 (345)
T 3t6p_A 295 ERTCKVCMDKEVS----VVFIPCGHLVVCQECAPSLRKCPICRGII 336 (345)
T ss_dssp TCBCTTTSSSBCC----EEEETTCCEEECTTTGGGCSBCTTTCCBC
T ss_pred CCCCCccCCcCCc----eEEcCCCChhHhHHHHhcCCcCCCCCCCc
Confidence 3579999987743 456899999 9999986 499998764
No 66
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=90.85 E-value=0.066 Score=54.31 Aligned_cols=39 Identities=33% Similarity=0.677 Sum_probs=31.4
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHh--------hhhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQ--------VCSVLCFAFF 1158 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~--------~~~~~~~~~~ 1158 (1164)
.-.||||++.+.+ |+. ++|||.....|+. .||+|+..+.
T Consensus 18 ~~~C~IC~~~~~~---pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 18 KYECPICLMALRE---AVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp GGBCTTTCSBCSS---EEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCChhhcC---cEE-CCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 4579999998765 444 7999999999995 4999987654
No 67
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=90.52 E-value=0.087 Score=47.94 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=30.2
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHhh-------hhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV-------CSVLCFAF 1157 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~-------~~~~~~~~ 1157 (1164)
+-.||||++.|-+ ||. ++|||..-+.|... ||+|++.+
T Consensus 14 ~~~CpI~~~~m~d---PV~-~~cGhtf~r~~I~~~l~~~~~cP~~~~~l 58 (85)
T 2kr4_A 14 EFRDPLMDTLMTD---PVR-LPSGTVMDRSIILRHLLNSPTDPFNRQML 58 (85)
T ss_dssp TTBCTTTCSBCSS---EEE-CTTSCEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred heECcccCchhcC---CeE-CCCCCEECHHHHHHHHhcCCCCCCCcCCC
Confidence 5679999988765 444 78999999999764 89998754
No 68
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=90.44 E-value=0.088 Score=49.36 Aligned_cols=38 Identities=16% Similarity=0.104 Sum_probs=30.5
Q ss_pred CCCCcccccccccccCcccccCCC-ccccHhhHhh-------hhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCG-HFMHSDCFQV-------CSVLCFAF 1157 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CG-H~~H~~C~~~-------~~~~~~~~ 1157 (1164)
+-.||||++.|-+ ||. ++|| |..-+.|... ||+|++.+
T Consensus 22 ~~~CpI~~~~m~d---PV~-~~cG~htf~r~cI~~~l~~~~~cP~~~~~l 67 (98)
T 1wgm_A 22 EFLDPIMSTLMCD---PVV-LPSSRVTVDRSTIARHLLSDQTDPFNRSPL 67 (98)
T ss_dssp TTBCTTTCSBCSS---EEE-CTTTCCEEEHHHHHHHTTTSCBCTTTCSBC
T ss_pred hcCCcCccccccC---CeE-CCCCCeEECHHHHHHHHHhCCCCCCCCCCC
Confidence 5679999988765 444 7999 9999999865 89998754
No 69
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=90.37 E-value=0.09 Score=59.74 Aligned_cols=44 Identities=18% Similarity=0.419 Sum_probs=32.7
Q ss_pred CcCCCCccccccccc-ccCccc---ccCCCccccHhhHhh------------------hhhhhhhh
Q 001072 1114 GLETNCPICCDFLFT-SSATVR---ALPCGHFMHSDCFQV------------------CSVLCFAF 1157 (1164)
Q Consensus 1114 ~~~~~CpiC~e~lft-s~~~~~---~l~CGH~~H~~C~~~------------------~~~~~~~~ 1157 (1164)
.....|+||.+++-+ ...|.+ -.+|||..|+.|..+ ||.|++.+
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pI 371 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL 371 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcC
Confidence 456789999999776 223322 468999999999843 99998754
No 70
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=90.09 E-value=0.082 Score=49.76 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=30.2
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHhh-------hhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV-------CSVLCFAF 1157 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~-------~~~~~~~~ 1157 (1164)
+-.||||++.|-+ ||. +||||..-+.|... ||+|++.+
T Consensus 29 ~~~CpI~~~~m~d---PV~-~~cGhtf~r~~I~~~l~~~~~cP~~~~~l 73 (100)
T 2kre_A 29 EFRDPLMDTLMTD---PVR-LPSGTIMDRSIILRHLLNSPTDPFNRQTL 73 (100)
T ss_dssp TTBCTTTCSBCSS---EEE-ETTTEEEEHHHHHHHTTSCSBCSSSCCBC
T ss_pred hhCCcCccCcccC---CeE-CCCCCEEchHHHHHHHHcCCCCCCCCCCC
Confidence 5689999988765 444 78999999999865 89998754
No 71
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=89.17 E-value=0.17 Score=46.36 Aligned_cols=33 Identities=12% Similarity=0.401 Sum_probs=24.4
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV 1149 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~ 1149 (1164)
.-.||||++++ +....+...+|||..-..|...
T Consensus 5 ~~~C~IC~~~~-~~~~~~~l~~CgH~FC~~Cl~~ 37 (94)
T 1wim_A 5 SSGCKLCLGEY-PVEQMTTIAQCQCIFCTLCLKQ 37 (94)
T ss_dssp BCCCSSSCCCC-BGGGEEEETTTTEEEEHHHHHH
T ss_pred CcCCcccCccc-ccccceEcCCCCCcccHHHHHH
Confidence 56799999874 4333334458999999999865
No 72
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=88.52 E-value=0.13 Score=56.37 Aligned_cols=40 Identities=28% Similarity=0.516 Sum_probs=33.3
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHhh---------hhh--hhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV---------CSV--LCFAFF 1158 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~---------~~~--~~~~~~ 1158 (1164)
+-.||||+++| ..||....|||..=+.|... ||| |.+.+-
T Consensus 181 el~CPIcl~~f---~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 181 ELTCPITCKPY---EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CSBCTTTSSBC---SSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeECcCccCcc---cCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 56799999998 56888789999999999874 999 987653
No 73
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=88.16 E-value=0.12 Score=55.48 Aligned_cols=36 Identities=11% Similarity=0.053 Sum_probs=28.0
Q ss_pred CCcccccccccccCcccccCCCccccHhhHhh--------hhhhhhhh
Q 001072 1118 NCPICCDFLFTSSATVRALPCGHFMHSDCFQV--------CSVLCFAF 1157 (1164)
Q Consensus 1118 ~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~--------~~~~~~~~ 1157 (1164)
.||||++.|-+ ||+ +||||+.-..|... ||+|+..+
T Consensus 210 ~c~i~~~~~~d---Pv~-~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~ 253 (281)
T 2c2l_A 210 CGKISFELMRE---PCI-TPSGITYDRKDIEEHLQRVGHFNPVTRSPL 253 (281)
T ss_dssp BCTTTCSBCSS---EEE-CSSCCEEETTHHHHHHHHTCSSCTTTCCCC
T ss_pred CCcCcCCHhcC---CeE-CCCCCEECHHHHHHHHHHCCCCCcCCCCCC
Confidence 49999987654 444 78999999999752 99998754
No 74
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=85.58 E-value=0.33 Score=41.64 Aligned_cols=42 Identities=26% Similarity=0.561 Sum_probs=30.8
Q ss_pred cCCcCCCCcccccccccccCcccccCCC--c---cccHhhHhh---------hhhhhhhh
Q 001072 1112 EKGLETNCPICCDFLFTSSATVRALPCG--H---FMHSDCFQV---------CSVLCFAF 1157 (1164)
Q Consensus 1112 e~~~~~~CpiC~e~lfts~~~~~~l~CG--H---~~H~~C~~~---------~~~~~~~~ 1157 (1164)
|......|.||++.. ..+ .++||. | ++|+.|... ||+|...+
T Consensus 2 e~~~~~~CrIC~~~~---~~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 2 EDEDVPVCWICNEEL---GNE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57 (60)
T ss_dssp TTCSCCEETTTTEEC---SCC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCCEeEEeecCC---CCc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCee
Confidence 445567899999872 223 368975 4 999999975 99998765
No 75
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=83.25 E-value=0.37 Score=50.15 Aligned_cols=37 Identities=11% Similarity=0.028 Sum_probs=27.7
Q ss_pred CCCcccccccccccCcccccCCCccccHhhHhh--------hhhhhhhh
Q 001072 1117 TNCPICCDFLFTSSATVRALPCGHFMHSDCFQV--------CSVLCFAF 1157 (1164)
Q Consensus 1117 ~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~--------~~~~~~~~ 1157 (1164)
-.||||++.|-+ ||. +||||..=..|... ||+|+..+
T Consensus 107 f~CPI~~elm~D---PV~-~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l 151 (179)
T 2f42_A 107 LCGKISFELMRE---PCI-TPSGITYDRKDIEEHLQRVGHFDPVTRSPL 151 (179)
T ss_dssp GBCTTTCSBCSS---EEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred hcccCccccCCC---CeE-CCCCCEECHHHHHHHHHhCCCCCCCCcCCC
Confidence 458999887664 555 59999998888642 89988654
No 76
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.52 E-value=1.3 Score=40.71 Aligned_cols=30 Identities=27% Similarity=0.497 Sum_probs=23.2
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQ 1148 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~ 1148 (1164)
+-.||||++.|-+ ||...+|||..-..|..
T Consensus 7 ~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~ 36 (94)
T 2yu4_A 7 GFTCPITKEEMKK---PVKNKVCGHTYEEDAIV 36 (94)
T ss_dssp CCBCTTTCSBCSS---EEEESSSCCEEEHHHHH
T ss_pred EeECcCcCchhcC---CEEcCCCCCeecHHHHH
Confidence 4679999987654 66644599999999963
No 77
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=67.02 E-value=1.9 Score=39.39 Aligned_cols=50 Identities=20% Similarity=0.574 Sum_probs=31.4
Q ss_pred ccccccC-------CcccChhhhcccCCCCCcccccCceecccccccccCCCCCCCCCCCCcccceEecccccc
Q 001072 999 LRAACCG-------KLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKF 1065 (1164)
Q Consensus 999 l~~~cC~-------k~y~Cr~CHde~~~H~~~r~~~~~~~C~~C~~~Q~~~~~C~~~~C~~~~~a~y~C~~C~l 1065 (1164)
+.||.|+ ++|.|..|+.. + +....|..|+.+..+ |.. | |.. .|||+.|+=
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~~-----~----~~~afCPeCgq~Le~---lkA--C-GA~--~yFC~~C~~ 59 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAKD-----F----SLQALCPDCRQPLQV---LKA--C-GAV--DYFCQNGHG 59 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCCE-----E----EEEEECSSSCSCCCE---EEE--T-TEE--EECCTTTTC
T ss_pred CCCCCCCCccccCCCceECcccccc-----C----CCcccCcchhhHHHH---HHh--c-CCc--CeeeccCCC
Confidence 4566664 35667777653 1 224488888877665 555 4 533 899999973
No 78
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=65.66 E-value=2.6 Score=45.51 Aligned_cols=21 Identities=10% Similarity=0.562 Sum_probs=15.5
Q ss_pred CCCChHHHHHHHHHHHHHHHH
Q 001072 933 STLDPRRKAYLIQNLMTSRWI 953 (1164)
Q Consensus 933 ~~l~~~~ka~~~q~lm~~~~~ 953 (1164)
..|+..+.-.++++|...+|+
T Consensus 131 k~l~~~eae~lL~~lv~~gWl 151 (238)
T 3nw0_A 131 KKMRKKEAEQVLQKFVQNKWL 151 (238)
T ss_dssp SCCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCHHHHHHHHHHHHHhcch
Confidence 567777777777777777774
No 79
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=59.59 E-value=2.3 Score=40.03 Aligned_cols=49 Identities=24% Similarity=0.592 Sum_probs=33.8
Q ss_pred ccccccCC-------cccChhhhcccCCCCCcccccCceecccccccccCCCCCCCCCCCCcccceEeccccc
Q 001072 999 LRAACCGK-------LFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICK 1064 (1164)
Q Consensus 999 l~~~cC~k-------~y~Cr~CHde~~~H~~~r~~~~~~~C~~C~~~Q~~~~~C~~~~C~~~~~a~y~C~~C~ 1064 (1164)
+.||.|+. +|.|..|+.+ -...-.|..|+.+-.+-+.| | .+.|||+.|+
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~---------f~~~a~CPdC~q~LevLkAC------G--AvdYFC~~ch 88 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEF---------IEMKALCPDCHQPLQVLKAC------G--AVDYFCQHGH 88 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCE---------EEEEEECTTTCSBCEEEEET------T--EEEEEETTTT
T ss_pred ccCccCCCcceecCCEEECccccch---------hhccccCcchhhHHHHHHHh------c--CcchhhccCC
Confidence 67777753 5568777653 13477888888776655544 3 4789999997
No 80
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=58.32 E-value=3 Score=41.97 Aligned_cols=26 Identities=23% Similarity=0.800 Sum_probs=19.3
Q ss_pred CCCcccccCCCCcceeecccccccccc
Q 001072 1077 FCNLCRVGRGLGVDFFHCMTCNCCLAK 1103 (1164)
Q Consensus 1077 ~CgiCR~g~gl~~~~fHC~~C~~C~~~ 1103 (1164)
+|+||.... ..++.|||+.||.|---
T Consensus 85 ~C~~C~l~d-~~k~~yHC~~CgiCR~G 110 (143)
T 2dkt_A 85 YCSICHLFD-KDKRQYHCESCGICRIG 110 (143)
T ss_dssp ECSSSCCEE-CSSSEEEETTTTEEEES
T ss_pred Eeceeeccc-CCCceecCCCCCceecc
Confidence 355777653 45789999999999653
No 81
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=48.81 E-value=6.8 Score=33.43 Aligned_cols=39 Identities=8% Similarity=-0.000 Sum_probs=29.2
Q ss_pred cCCCCcccccccccccCcccccCCCccccHhhHhh-------hhhhhhh
Q 001072 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV-------CSVLCFA 1156 (1164)
Q Consensus 1115 ~~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~-------~~~~~~~ 1156 (1164)
+.--||||++.|-+ ||...+|||..=..|... ||+.++.
T Consensus 2 ~~~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~ 47 (61)
T 2bay_A 2 SHMLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEP 47 (61)
T ss_dssp --CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCB
T ss_pred CeEEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCC
Confidence 45679999998874 566559999999998875 7777653
No 82
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=47.77 E-value=6 Score=37.30 Aligned_cols=24 Identities=25% Similarity=0.617 Sum_probs=14.2
Q ss_pred eeecccccccccccccccccccCCcCCCCccccccc
Q 001072 1091 FFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFL 1126 (1164)
Q Consensus 1091 ~fHC~~C~~C~~~~~~~H~C~e~~~~~~CpiC~e~l 1126 (1164)
+|||..|+.-+.+ ...||-|.+.|
T Consensus 48 ~~hC~~C~~~f~~------------~a~CPdC~q~L 71 (101)
T 2jne_A 48 HARCRSCGEFIEM------------KALCPDCHQPL 71 (101)
T ss_dssp EEEETTTCCEEEE------------EEECTTTCSBC
T ss_pred EEECccccchhhc------------cccCcchhhHH
Confidence 6666666665544 35666666544
No 83
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=47.26 E-value=13 Score=37.29 Aligned_cols=90 Identities=18% Similarity=0.313 Sum_probs=50.6
Q ss_pred CceecccccccccCCCCCCCCCCCCcccceEecccccc-c-----cCCCCcccCCCCCcccccCCCCcceeecccccccc
Q 001072 1028 TEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKF-F-----DDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCL 1101 (1164)
Q Consensus 1028 ~~~~C~~C~~~Q~~~~~C~~~~C~~~~~a~y~C~~C~l-~-----d~~k~~yHC~~CgiCR~g~gl~~~~fHC~~C~~C~ 1101 (1164)
..+.|..|+..+.+.+.=.. -..-.|.-..|..|+. | .-+.+.|. ++|.+|.-|+ +-+=|++|-.++
T Consensus 13 ~~i~Ct~Cg~~~~~~q~~~~--~~HPll~v~~C~~C~~~y~~~~~~~d~Dg~~-d~C~vC~~GG----~LlcCD~Cpr~F 85 (142)
T 2lbm_A 13 GIVSCTACGQQVNHFQKDSI--YRHPSLQVLICKNCFKYYMSDDISRDSDGMD-EQCRWCAEGG----NLICCDFCHNAF 85 (142)
T ss_dssp CCCBCTTTCSBSTTTCSSSE--EEETTTTEEEEHHHHHHHHHSCCCBCTTSCB-CSCSSSCCCS----SEEECSSSCCEE
T ss_pred CCCEecCCCCccccccccch--hcCCCccccccHHHHHHHhcCCceecCCCCC-CeecccCCCC----cEEeCCCCCCee
Confidence 46778888777654331100 0012366667888874 2 11123343 7899999886 578999987766
Q ss_pred ccc-----cc-cc-ccc-cCCcCCCCccccc
Q 001072 1102 AKK-----LV-DH-KCR-EKGLETNCPICCD 1124 (1164)
Q Consensus 1102 ~~~-----~~-~H-~C~-e~~~~~~CpiC~e 1124 (1164)
-.. ++ .+ .-+ .....-+||.|..
T Consensus 86 h~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 86 CKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp EHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred eHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 443 10 00 011 1345677999963
No 84
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=47.10 E-value=9.1 Score=31.59 Aligned_cols=27 Identities=44% Similarity=0.908 Sum_probs=15.4
Q ss_pred cceEeccccc-cccCC----CCcccCCCCCcc
Q 001072 1055 MAKYYCGICK-FFDDE----RVVYHCPFCNLC 1081 (1164)
Q Consensus 1055 ~a~y~C~~C~-l~d~~----k~~yHC~~CgiC 1081 (1164)
|+.|-|-.|. -|+++ -+--+||.||.=
T Consensus 1 ~~iY~C~rCg~~fs~~el~~lP~IrCpyCGyr 32 (48)
T 4ayb_P 1 MAVYRCGKCWKTFTDEQLKVLPGVRCPYCGYK 32 (48)
T ss_dssp ----CCCCTTTTCCCCCSCCCSSSCCTTTCCS
T ss_pred CcEEEeeccCCCccHHHHhhCCCcccCccCcE
Confidence 4567777783 46655 345589999853
No 85
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=42.92 E-value=11 Score=32.01 Aligned_cols=26 Identities=38% Similarity=1.087 Sum_probs=17.8
Q ss_pred cceEecccccc-ccCC-----------------CCcccCCCCCc
Q 001072 1055 MAKYYCGICKF-FDDE-----------------RVVYHCPFCNL 1080 (1164)
Q Consensus 1055 ~a~y~C~~C~l-~d~~-----------------k~~yHC~~Cgi 1080 (1164)
|.+|-|.+|.+ ||.+ ..-|.||.||.
T Consensus 1 m~~y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 1 MKKYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGV 44 (54)
T ss_dssp CCCEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCC
T ss_pred CCceECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCC
Confidence 57899999975 5542 34567887763
No 86
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=41.90 E-value=10 Score=35.02 Aligned_cols=34 Identities=24% Similarity=0.639 Sum_probs=22.2
Q ss_pred CCcccCCCCC-----cccccCCCCcceeecccccccccc
Q 001072 1070 RVVYHCPFCN-----LCRVGRGLGVDFFHCMTCNCCLAK 1103 (1164)
Q Consensus 1070 k~~yHC~~Cg-----iCR~g~gl~~~~fHC~~C~~C~~~ 1103 (1164)
..+|.||+|| .|++-+.-|.-.-+|..||.=+..
T Consensus 21 ~t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 21 ETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp SSCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEE
T ss_pred CCeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEe
Confidence 3678888888 566644444557777777765443
No 87
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=40.55 E-value=9.1 Score=28.47 Aligned_cols=30 Identities=27% Similarity=0.704 Sum_probs=22.1
Q ss_pred cCCCCcccccccccccCcccccCCCccccHhhH
Q 001072 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCF 1147 (1164)
Q Consensus 1115 ~~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~ 1147 (1164)
|...||.|...++-- +.+ .-=|...|..||
T Consensus 2 m~~~C~~C~k~Vy~~-Ek~--~~~g~~~Hk~CF 31 (31)
T 1zfo_A 2 MNPNCARCGKIVYPT-EKV--NCLDKFWHKACF 31 (31)
T ss_dssp CCCBCSSSCSBCCGG-GCC--CSSSSCCCGGGC
T ss_pred CCCcCCccCCEEecc-eeE--EECCeEecccCC
Confidence 456899999988764 223 334799999997
No 88
>3agt_A Hemerythrin-like domain protein DCRH; metal binding protein, oxygen binding, DIIRON, four-helix BU; 1.40A {Desulfovibrio vulgaris} PDB: 2awy_A 2avk_A 3agu_A 2awc_A
Probab=39.44 E-value=62 Score=31.31 Aligned_cols=71 Identities=11% Similarity=0.137 Sum_probs=49.1
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhC-CHHHHHHHHHhH
Q 001072 114 IARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKF-SFEEQASLVWQF 192 (1164)
Q Consensus 114 v~~~~~~EH~~i~~l~~~L~~~L~~~~~~~~~~~~eLa~~~~~l~t~L~~HL~~EEeqvlPLL~~~f-S~~Eqa~L~~~~ 192 (1164)
-...+..+|+..=.++.+|..++.... ..++..++.+|..-...|+..||+-.--. .| -.++-...+.+|
T Consensus 15 G~~~ID~qHk~L~~lin~l~~a~~~~~------~~~i~~~l~~L~~y~~~HF~~EE~lM~~~---~yp~~~~H~~~H~~f 85 (136)
T 3agt_A 15 NLPSIDTQHKRLVDYINDLYRAARRRD------MDKAREVFDALKNYAVEHFGYEERLFADY---AYPEATRHKEIHRRF 85 (136)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TCTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHcCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCCcHHHHHHHHHHH
Confidence 456788999988888888777765432 35677777777888999999999754211 12 234446667777
Q ss_pred h
Q 001072 193 L 193 (1164)
Q Consensus 193 ~ 193 (1164)
+
T Consensus 86 ~ 86 (136)
T 3agt_A 86 V 86 (136)
T ss_dssp H
T ss_pred H
Confidence 7
No 89
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=37.02 E-value=17 Score=30.37 Aligned_cols=13 Identities=38% Similarity=1.214 Sum_probs=9.1
Q ss_pred cceEecccccc-cc
Q 001072 1055 MAKYYCGICKF-FD 1067 (1164)
Q Consensus 1055 ~a~y~C~~C~l-~d 1067 (1164)
|.+|.|.+|.+ ||
T Consensus 1 m~~y~C~~CGyvYd 14 (52)
T 1e8j_A 1 MDIYVCTVCGYEYD 14 (52)
T ss_dssp CCCEECSSSCCCCC
T ss_pred CCcEEeCCCCeEEc
Confidence 56788888865 45
No 90
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=36.99 E-value=14 Score=30.36 Aligned_cols=25 Identities=36% Similarity=1.099 Sum_probs=18.2
Q ss_pred cceEecccccc-ccC---------C-CCcccCCCCC
Q 001072 1055 MAKYYCGICKF-FDD---------E-RVVYHCPFCN 1079 (1164)
Q Consensus 1055 ~a~y~C~~C~l-~d~---------~-k~~yHC~~Cg 1079 (1164)
|.+|-|.+|.+ ||. + ..-|.||.||
T Consensus 2 m~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg 37 (46)
T 6rxn_A 2 MQKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCG 37 (46)
T ss_dssp CCCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTC
T ss_pred CCEEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCC
Confidence 67899999976 552 2 4457888887
No 91
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=35.75 E-value=18 Score=34.45 Aligned_cols=26 Identities=19% Similarity=0.515 Sum_probs=15.4
Q ss_pred CCcccccCCCCcceeecccccccccc
Q 001072 1078 CNLCRVGRGLGVDFFHCMTCNCCLAK 1103 (1164)
Q Consensus 1078 CgiCR~g~gl~~~~fHC~~C~~C~~~ 1103 (1164)
|.+|+.++.-..+..-|+.|..-+-+
T Consensus 64 C~vC~~~~~~~~~ll~Cd~C~~~yH~ 89 (112)
T 3v43_A 64 CSSCRDQGKNADNMLFCDSCDRGFHM 89 (112)
T ss_dssp BTTTCCCCCTTCCCEECTTTCCEECG
T ss_pred cccccCcCCCccceEEcCCCCCeeec
Confidence 45555542112368889998766554
No 92
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=34.03 E-value=5.4 Score=47.03 Aligned_cols=62 Identities=31% Similarity=0.651 Sum_probs=41.6
Q ss_pred CceecccccccccCCCCCCCCCCCCcccceEeccccc-cccCC---CCcccCCCCCcccccCCCCcceeecccccc--cc
Q 001072 1028 TEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICK-FFDDE---RVVYHCPFCNLCRVGRGLGVDFFHCMTCNC--CL 1101 (1164)
Q Consensus 1028 ~~~~C~~C~~~Q~~~~~C~~~~C~~~~~a~y~C~~C~-l~d~~---k~~yHC~~CgiCR~g~gl~~~~fHC~~C~~--C~ 1101 (1164)
....|..|+... .|..+|-+.|.-|| ||-.. +..|.|..=|-|.+.+. ....|..|.. |+
T Consensus 136 ~~~~C~VCg~~a-----------~g~hygv~sC~~Ck~FFrR~~~~~~~~~C~~~~~C~i~~~---~r~~C~~CR~~KCl 201 (467)
T 3dzy_A 136 TKHICAICGDRS-----------SGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKR---QRNRCQYCRYQKCL 201 (467)
T ss_dssp -CEECTTTSSEE-----------CSEETTEECCHHHHHHHHHHHHTTCCCCCSSSSCCCCCSS---SSSSCHHHHHHHHH
T ss_pred CCCcceeCCCCC-----------CCCcCCCcchhhhhHhccccccCCCceeCCCCCCCCCCcc---cccccccchhhhhh
Confidence 355687776531 25678889999997 55432 67899988788887653 4666777764 54
Q ss_pred cc
Q 001072 1102 AK 1103 (1164)
Q Consensus 1102 ~~ 1103 (1164)
.+
T Consensus 202 ~v 203 (467)
T 3dzy_A 202 AM 203 (467)
T ss_dssp HT
T ss_pred hc
Confidence 43
No 93
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=34.03 E-value=17 Score=30.87 Aligned_cols=14 Identities=43% Similarity=1.201 Sum_probs=9.8
Q ss_pred cceEecccccc-ccC
Q 001072 1055 MAKYYCGICKF-FDD 1068 (1164)
Q Consensus 1055 ~a~y~C~~C~l-~d~ 1068 (1164)
|.+|.|.+|.+ ||.
T Consensus 1 m~~y~C~~CGyvYd~ 15 (55)
T 2v3b_B 1 MRKWQCVVCGFIYDE 15 (55)
T ss_dssp CCEEEETTTCCEEET
T ss_pred CCcEEeCCCCeEECC
Confidence 56788888865 554
No 94
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=33.70 E-value=16 Score=32.40 Aligned_cols=14 Identities=29% Similarity=0.964 Sum_probs=10.7
Q ss_pred ccceEecccccc-cc
Q 001072 1054 SMAKYYCGICKF-FD 1067 (1164)
Q Consensus 1054 ~~a~y~C~~C~l-~d 1067 (1164)
.|.+|.|.+|-+ ||
T Consensus 4 ~m~~y~C~vCGyiYd 18 (70)
T 1dx8_A 4 DEGKYECEACGYIYE 18 (70)
T ss_dssp CSSCEEETTTCCEEC
T ss_pred CCceEEeCCCCEEEc
Confidence 578899999975 55
No 95
>3agt_A Hemerythrin-like domain protein DCRH; metal binding protein, oxygen binding, DIIRON, four-helix BU; 1.40A {Desulfovibrio vulgaris} PDB: 2awy_A 2avk_A 3agu_A 2awc_A
Probab=33.06 E-value=3.3e+02 Score=26.03 Aligned_cols=113 Identities=14% Similarity=0.188 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHhhhhhhcccccc----hhhhhhhhhhHHhHHHH
Q 001072 294 IDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVI----FPAVDVELSFAQEHAEE 369 (1164)
Q Consensus 294 id~L~~~HkALRrEL~~L~~~a~~i~~~gd~~~L~~L~~r~~fL~~vL~~Hs~aEDevl----FPaL~~r~~me~EH~~i 369 (1164)
+..+=.-|+.|=.-+++|...+.. ++ ...+..-+.+|.+....|=..|+.++ ||.++.+. +++
T Consensus 16 ~~~ID~qHk~L~~lin~l~~a~~~----~~---~~~i~~~l~~L~~y~~~HF~~EE~lM~~~~yp~~~~H~------~~H 82 (136)
T 3agt_A 16 LPSIDTQHKRLVDYINDLYRAARR----RD---MDKAREVFDALKNYAVEHFGYEERLFADYAYPEATRHK------EIH 82 (136)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHT----TC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHH------HHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHc----Cc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHH------HHH
Confidence 344445788887777777766543 22 45667778889999999999998754 66555332 334
Q ss_pred HHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 001072 370 EIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARR 427 (1164)
Q Consensus 370 e~l~e~L~~ll~~l~~a~~~s~~~~~~~eLa~~le~L~~~L~~Hf~kEE~qvfPLl~~ 427 (1164)
+..++.+..+...+.. +. ..+..+| +.-|..-|..|...+-...-+.+.+
T Consensus 83 ~~f~~~v~~l~~~~~~-g~----~~~~~~l---~~~L~~Wl~~HI~~~D~~~~~~l~~ 132 (136)
T 3agt_A 83 RRFVETVLKWEKQLAA-GD----PEVVMTT---LRGLVDWLVNHIMKEDKKYEAYLRE 132 (136)
T ss_dssp HHHHHHHHHHHHHHTT-CC----HHHHHHH---HHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CC----hHHHHHH---HHHHHHHHHHHhHHHhHHHHHHHHH
Confidence 4455555555554432 21 1233344 3446778999999998888777654
No 96
>3oao_A Uncharacterized protein from DUF2059 family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.72A {Pseudomonas aeruginosa} PDB: 2x3o_A
Probab=32.35 E-value=1.7e+02 Score=29.39 Aligned_cols=68 Identities=15% Similarity=0.156 Sum_probs=51.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHH--HHhhhhhhhhCCHHHHHHHH--------HhHhcCCCH---HHHHHHhhhhc
Q 001072 143 EESYRRELASCTGALQTSISQHMSKEE--EQVFPLLIEKFSFEEQASLV--------WQFLCSIPV---NMMAEFLPWLS 209 (1164)
Q Consensus 143 ~~~~~~eLa~~~~~l~t~L~~HL~~EE--eqvlPLL~~~fS~~Eqa~L~--------~~~~~siP~---~~m~~~LpWl~ 209 (1164)
|++..+.+..+.+.+.+.+.+.+..++ ..+.|+..++||.+|+.+|. .+++...|. +.|..+-.|+.
T Consensus 41 p~~~~~~~~~~~~k~~~~~~k~~s~~~l~~~~~~iY~~~fT~~El~~l~~FY~sp~Gkk~~~~~p~~~~~~~~~~q~~~~ 120 (147)
T 3oao_A 41 PESKKAVLERYQAKANAELDRAIGWDKIKPELIKLYTTNFTESELKDLNAFYQSPLGKKVLEKMPRLTAESAQLTQAKLQ 120 (147)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 444566777888888888888886665 89999999999999999874 566666665 45556667776
Q ss_pred C
Q 001072 210 S 210 (1164)
Q Consensus 210 ~ 210 (1164)
.
T Consensus 121 ~ 121 (147)
T 3oao_A 121 G 121 (147)
T ss_dssp G
T ss_pred H
Confidence 6
No 97
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=32.08 E-value=21 Score=32.71 Aligned_cols=15 Identities=27% Similarity=0.802 Sum_probs=11.0
Q ss_pred ccceEecccccc-ccC
Q 001072 1054 SMAKYYCGICKF-FDD 1068 (1164)
Q Consensus 1054 ~~a~y~C~~C~l-~d~ 1068 (1164)
.+.+|.|.+|.+ ||.
T Consensus 24 em~~y~C~vCGyvYD~ 39 (81)
T 2kn9_A 24 DYKLFRCIQCGFEYDE 39 (81)
T ss_dssp CCCEEEETTTCCEEET
T ss_pred CcceEEeCCCCEEEcC
Confidence 477888999965 554
No 98
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=31.12 E-value=20 Score=34.41 Aligned_cols=27 Identities=22% Similarity=0.527 Sum_probs=15.5
Q ss_pred cceEecccccc-ccCCCCcc-cCCCCCcc
Q 001072 1055 MAKYYCGICKF-FDDERVVY-HCPFCNLC 1081 (1164)
Q Consensus 1055 ~a~y~C~~C~l-~d~~k~~y-HC~~CgiC 1081 (1164)
-+.|.|..|.. |.-+...+ .||.||-=
T Consensus 71 p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 71 KVELECKDCSHVFKPNALDYGVCEKCHSK 99 (119)
T ss_dssp CCEEECSSSSCEECSCCSTTCCCSSSSSC
T ss_pred cceEEcCCCCCEEeCCCCCCCcCccccCC
Confidence 34566666632 33345567 78888743
No 99
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=30.91 E-value=1.9e+02 Score=33.17 Aligned_cols=63 Identities=10% Similarity=0.129 Sum_probs=35.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhcccccccchhHHhhhhhhHHHH------------HHhhhhHHHHHHHHHHHHhhhc
Q 001072 74 GGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTY------------SLEHEGESVLFDQLFELLNSSM 140 (1164)
Q Consensus 74 d~~~~~~l~~r~~~l~~~l~~Hh~~EDe~ifPaL~~R~~~v~~~~------------~~EH~~i~~l~~~L~~~L~~~~ 140 (1164)
|-..++++..+.+.+...|+. =..--|+++..-++.+..-+ ...-..-+.++++|...|..+.
T Consensus 46 ~~~~~~~~q~~le~~~~~lr~----~~~k~~~~~~~~~~~~~~~~~~~~~~il~~v~~~~~~~~~~~~~~l~~~l~~l~ 120 (369)
T 3rfy_A 46 DNKAIREVQKPLEDITDSLKI----AGVKALDSVERNVRQASRTLQQGKSIIVAGFAESKKDHGNEMIEKLEAGMQDML 120 (369)
T ss_dssp CCHHHHHHHHHHHTHHHHTTS----CSTTTHHHHHHHHHHHHHHHSCHHHHHTTTCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHhcc----ccCCCchHHHHHHHHHHHHHhhCHHHHHhhcChhhHHHHHHHHHHHHHHHHHHH
Confidence 345777777777666655541 11123777766554333222 1222333568888888888886
No 100
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=30.89 E-value=31 Score=29.21 Aligned_cols=28 Identities=25% Similarity=0.577 Sum_probs=17.3
Q ss_pred CCcccCCCCCc-ccccCCCCcceeecccccc
Q 001072 1070 RVVYHCPFCNL-CRVGRGLGVDFFHCMTCNC 1099 (1164)
Q Consensus 1070 k~~yHC~~Cgi-CR~g~gl~~~~fHC~~C~~ 1099 (1164)
+...-||.||- .-... ..|.++|.+|+.
T Consensus 16 ~~~~fCPkCG~~~~ma~--~~dr~~C~kCgy 44 (55)
T 2k4x_A 16 RKHRFCPRCGPGVFLAE--HADRYSCGRCGY 44 (55)
T ss_dssp CSSCCCTTTTTTCCCEE--CSSEEECTTTCC
T ss_pred EccccCcCCCCceeEec--cCCEEECCCCCC
Confidence 45677888873 33222 247888888875
No 101
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=30.38 E-value=17 Score=34.47 Aligned_cols=38 Identities=24% Similarity=0.398 Sum_probs=29.1
Q ss_pred CCcccccccccccCcccccCCCccccHhhHhh--------hhhhhhhhh
Q 001072 1118 NCPICCDFLFTSSATVRALPCGHFMHSDCFQV--------CSVLCFAFF 1158 (1164)
Q Consensus 1118 ~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~--------~~~~~~~~~ 1158 (1164)
-|++|.-++-. -...+||+|..=.+|+.. ||+|...|.
T Consensus 3 fC~~C~~Pi~i---ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKV---YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSE---EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEE---EeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 48888765543 246789999999999943 999998764
No 102
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=29.91 E-value=19 Score=33.39 Aligned_cols=17 Identities=29% Similarity=0.784 Sum_probs=12.0
Q ss_pred CcccceEecccccc-ccC
Q 001072 1052 GLSMAKYYCGICKF-FDD 1068 (1164)
Q Consensus 1052 ~~~~a~y~C~~C~l-~d~ 1068 (1164)
+..|.+|.|.+|.+ ||.
T Consensus 30 ~~~m~~y~C~vCGyvYD~ 47 (87)
T 1s24_A 30 GKAYLKWICITCGHIYDE 47 (87)
T ss_dssp --CCCEEEETTTTEEEET
T ss_pred ccCCceEECCCCCeEecC
Confidence 45688999999974 664
No 103
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=29.65 E-value=20 Score=32.67 Aligned_cols=36 Identities=19% Similarity=0.588 Sum_probs=19.3
Q ss_pred cceeecccccccccccc--cccccccCC-cCCCCccccc
Q 001072 1089 VDFFHCMTCNCCLAKKL--VDHKCREKG-LETNCPICCD 1124 (1164)
Q Consensus 1089 ~~~fHC~~C~~C~~~~~--~~H~C~e~~-~~~~CpiC~e 1124 (1164)
..-|.|..|+.-+.... ..|.=+-.. ....|++|..
T Consensus 64 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 102 (124)
T 2dlq_A 64 EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQ 102 (124)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCC
T ss_pred CCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccc
Confidence 34677777777665432 455422211 2355777764
No 104
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=29.43 E-value=24 Score=31.37 Aligned_cols=24 Identities=25% Similarity=0.557 Sum_probs=12.0
Q ss_pred ceEeccccccc-c-CCCCcccCCCCC
Q 001072 1056 AKYYCGICKFF-D-DERVVYHCPFCN 1079 (1164)
Q Consensus 1056 a~y~C~~C~l~-d-~~k~~yHC~~Cg 1079 (1164)
..|.|..|..- + .+.+.-+|+.||
T Consensus 27 v~Y~C~~CG~~~e~~~~d~irCp~CG 52 (70)
T 1twf_L 27 LKYICAECSSKLSLSRTDAVRCKDCG 52 (70)
T ss_dssp CCEECSSSCCEECCCTTSTTCCSSSC
T ss_pred EEEECCCCCCcceeCCCCCccCCCCC
Confidence 44666666542 1 123444666666
No 105
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=28.51 E-value=23 Score=32.38 Aligned_cols=8 Identities=38% Similarity=0.991 Sum_probs=4.4
Q ss_pred cccCCCCC
Q 001072 1072 VYHCPFCN 1079 (1164)
Q Consensus 1072 ~yHC~~Cg 1079 (1164)
.|||+.||
T Consensus 18 ~~~C~~C~ 25 (81)
T 2jrp_A 18 TAHCETCA 25 (81)
T ss_dssp EEECTTTC
T ss_pred ceECcccc
Confidence 44555554
No 106
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=28.17 E-value=19 Score=33.70 Aligned_cols=12 Identities=17% Similarity=0.661 Sum_probs=5.8
Q ss_pred CCcccCCCCCcc
Q 001072 1070 RVVYHCPFCNLC 1081 (1164)
Q Consensus 1070 k~~yHC~~CgiC 1081 (1164)
-.|+||..||.=
T Consensus 52 ~GIW~C~~C~~~ 63 (92)
T 3izc_m 52 AGIWTCSCCKKT 63 (92)
T ss_dssp TTEEECTTTCCE
T ss_pred cceEEcCCCCCE
Confidence 345555555443
No 107
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=27.82 E-value=13 Score=32.09 Aligned_cols=39 Identities=23% Similarity=0.462 Sum_probs=26.7
Q ss_pred CCCCccccccccc---ccCcccccCCCccccHhhHhhhhhhhhhh
Q 001072 1116 ETNCPICCDFLFT---SSATVRALPCGHFMHSDCFQVCSVLCFAF 1157 (1164)
Q Consensus 1116 ~~~CpiC~e~lft---s~~~~~~l~CGH~~H~~C~~~~~~~~~~~ 1157 (1164)
...|+.|.+.+.. ....+.++ |..-|..||. |.+|.+.+
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~--~~~~H~~CF~-C~~C~~~L 56 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYE--GQSWHDYCFH-CKKCSVNL 56 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEET--TEEEETTTCB-CSSSCCBC
T ss_pred CccCcccCCcccCCCCCceeEEEC--cceeCcccCE-ehhcCCCC
Confidence 3568888888875 33334443 6788999984 78887664
No 108
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=27.76 E-value=22 Score=43.52 Aligned_cols=84 Identities=19% Similarity=0.472 Sum_probs=30.0
Q ss_pred Eeccccc--cccCCCCcccCCCCCcccccCCCCcceeecc--ccccccccc--------ccccccccC--CcCCCCcccc
Q 001072 1058 YYCGICK--FFDDERVVYHCPFCNLCRVGRGLGVDFFHCM--TCNCCLAKK--------LVDHKCREK--GLETNCPICC 1123 (1164)
Q Consensus 1058 y~C~~C~--l~d~~k~~yHC~~CgiCR~g~gl~~~~fHC~--~C~~C~~~~--------~~~H~C~e~--~~~~~CpiC~ 1123 (1164)
.||+.|. +|.--|.=|.|..||++-..+ |. .-..|.... ...|.=+.. ..-..|.+|.
T Consensus 49 ~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~--------C~~~v~~~c~~~~~~~~~~~~~~~h~~~~~~~~~~~~C~~C~ 120 (674)
T 3pfq_A 49 TFCSHCTDFIWGFGKQGFQCQVCSFVVHKR--------CHEFVTFSCPGADKGPASDDPRSKHKFKIHTYSSPTFCDHCG 120 (674)
T ss_dssp -------------------------------------------------------------CCCCCEECCSSCCCCSSSC
T ss_pred CccccccccccccCCceeECCCCCCCcChh--------hcCcCcccCCCcccccccccccCCcceeecCCCCCCCCCccc
Confidence 4677775 455557778888887643321 21 112221111 124655543 3457899998
Q ss_pred cccccc-cCcccccCCCccccHhhHhh
Q 001072 1124 DFLFTS-SATVRALPCGHFMHSDCFQV 1149 (1164)
Q Consensus 1124 e~lfts-~~~~~~l~CGH~~H~~C~~~ 1149 (1164)
..|+.- .+..+.--||-.+|..|...
T Consensus 121 ~~l~g~~~qg~~C~~C~~~~H~~C~~~ 147 (674)
T 3pfq_A 121 SLLYGLIHQGMKCDTCMMNVHKRCVMN 147 (674)
T ss_dssp SCCBBSSSCEECCSSSCCCBCSSTTSS
T ss_pred cccchhhcCccccccCCcchhhhhhhc
Confidence 887642 24556667899999999865
No 109
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=27.51 E-value=16 Score=34.36 Aligned_cols=54 Identities=26% Similarity=0.626 Sum_probs=34.8
Q ss_pred CcccceEeccccccccCCCCcccCCCCCcccccCCCCcceeecccccccccccccccccccCCcCCCCcccccccccccC
Q 001072 1052 GLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSA 1131 (1164)
Q Consensus 1052 ~~~~a~y~C~~C~l~d~~k~~yHC~~CgiCR~g~gl~~~~fHC~~C~~C~~~~~~~H~C~e~~~~~~CpiC~e~lfts~~ 1131 (1164)
....|+|+|-.|.|.++. --.| .|.|-|.+| +++-+ +....||||...|=|...
T Consensus 23 ~s~~G~~nCKsCWf~~k~--LV~C-------------~dHYLCl~C---LtlmL--------~~SdrCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 23 ATHLGPQFCKSCWFENKG--LVEC-------------NNHYLCLNC---LTLLL--------SVSNRCPICKMPLPTKLR 76 (99)
T ss_dssp CCCSCCCCCCSSCSCCSS--EEEC-------------SSCEEEHHH---HHHTC--------SSSSEETTTTEECCCCSC
T ss_pred ccccCcccChhhccccCC--eeee-------------cchhhHHHH---HHHHH--------hhccCCcccCCcCCccee
Confidence 346899999999998664 1111 155555554 44433 113579999999977654
No 110
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.08 E-value=13 Score=31.79 Aligned_cols=38 Identities=24% Similarity=0.530 Sum_probs=23.3
Q ss_pred CCCcccccccccccCcccccCCCccccHhhHhhhhhhhhhh
Q 001072 1117 TNCPICCDFLFTSSATVRALPCGHFMHSDCFQVCSVLCFAF 1157 (1164)
Q Consensus 1117 ~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~~~~~~~~~ 1157 (1164)
..|+.|.+.+......+.+ =|..-|..||. |.+|.+.+
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF~-C~~C~~~L 43 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEY--GGQTWHEHCFL-CSGCEQPL 43 (72)
T ss_dssp CBCSSSCCBCCSSSCEECS--TTCCEETTTCB-CTTTCCBT
T ss_pred CCCccCCCccccCccEEEE--CccccCcccCe-ECCCCCcC
Confidence 4677788777653332222 36777888884 66776543
No 111
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=26.32 E-value=19 Score=33.60 Aligned_cols=10 Identities=20% Similarity=0.624 Sum_probs=4.7
Q ss_pred CcccCCCCCc
Q 001072 1071 VVYHCPFCNL 1080 (1164)
Q Consensus 1071 ~~yHC~~Cgi 1080 (1164)
.|+||..||.
T Consensus 53 GIW~C~~Cg~ 62 (92)
T 3iz5_m 53 GIWGCKDCGK 62 (92)
T ss_dssp TEEECSSSCC
T ss_pred ceEEcCCCCC
Confidence 4444444443
No 112
>2hmq_A Hemerythrin; oxygen transport; 1.66A {Themiste dyscritum} SCOP: a.24.4.1 PDB: 2hmz_A 1hmd_A 1hmo_A 1i4y_A 1i4z_A 1hrb_A
Probab=25.69 E-value=1.6e+02 Score=27.74 Aligned_cols=55 Identities=11% Similarity=0.276 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhHhhhhhh----hhHHhhhCCHHHHHHHHHHHhhccCHHHHHHhhhHHhhcC
Q 001072 784 CKSIRVTLDQHVFREELEL----WPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSAL 842 (1164)
Q Consensus 784 ~ksl~~~L~~Hi~~EE~Ev----fPL~~K~fS~eeQ~~Lv~~~l~~~p~~lLq~~LPWl~~~L 842 (1164)
.+.|..-+..||..||.-+ +|-+..| .++-+.++.++.... ++++.+..||+.+.
T Consensus 44 l~~L~~y~~~HF~~EE~lM~~~~yp~~~~H--~~~H~~f~~~v~~l~--~l~~~l~~Wl~~HI 102 (113)
T 2hmq_A 44 LNELRRCTGKHFLNEQQLMQASQYAGYAEH--KKAHDDFIHKLDTWD--GDVTYAKNWLVNHI 102 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCTTHHHH--HHHHHHHHHHHHTCC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcHHHH--HHHHHHHHHHHHHHH--HHHHHHHHHHHHHh
Confidence 4788889999999999643 6777777 677777777766654 56666667776653
No 113
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=25.59 E-value=17 Score=35.36 Aligned_cols=29 Identities=17% Similarity=0.474 Sum_probs=13.2
Q ss_pred ceEecccccccc---CCCCcccCCCCCccccc
Q 001072 1056 AKYYCGICKFFD---DERVVYHCPFCNLCRVG 1084 (1164)
Q Consensus 1056 a~y~C~~C~l~d---~~k~~yHC~~CgiCR~g 1084 (1164)
++|+|+-|.-.+ ..-.|+||..||.=-.|
T Consensus 59 akytCPfCGk~~vKR~avGIW~C~~Cgk~fAG 90 (116)
T 3cc2_Z 59 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFTG 90 (116)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCEEEC
T ss_pred cCCcCCCCCCceeEecCceeEECCCCCCEEEC
Confidence 455555554211 11345566666544333
No 114
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.22 E-value=16 Score=31.14 Aligned_cols=38 Identities=29% Similarity=0.525 Sum_probs=21.3
Q ss_pred CCCcccccccccccCcccccCCCccccHhhHhhhhhhhhhh
Q 001072 1117 TNCPICCDFLFTSSATVRALPCGHFMHSDCFQVCSVLCFAF 1157 (1164)
Q Consensus 1117 ~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~~~~~~~~~ 1157 (1164)
..|+.|.+.+......+.++ |...|..||. |.+|.+.+
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~--~~~~H~~CF~-C~~C~~~L 43 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVAL--DRVFHVGCFV-CSTCRAQL 43 (72)
T ss_dssp CCCSSSCSCCCSSSCCEECS--SSEECTTTCB-CSSSCCBC
T ss_pred CCCccCCCccCCCceEEEEC--CCeEcccCCc-ccccCCcC
Confidence 45677777666433222233 5666777773 66665543
No 115
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=24.71 E-value=18 Score=33.20 Aligned_cols=30 Identities=17% Similarity=0.492 Sum_probs=19.6
Q ss_pred ceEeccccc---cccCCCCcccCCCCCcccccC
Q 001072 1056 AKYYCGICK---FFDDERVVYHCPFCNLCRVGR 1085 (1164)
Q Consensus 1056 a~y~C~~C~---l~d~~k~~yHC~~CgiCR~g~ 1085 (1164)
++|.|+-|. +|+....|.+|++||.--.|+
T Consensus 26 ~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCEEECC
T ss_pred ccCcCCCCCCcceeccCCCeEECCCCCCEecCC
Confidence 467777774 344447788888888665553
No 116
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=24.62 E-value=41 Score=30.90 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=16.9
Q ss_pred eccccccccCCCCcccCCCCCcccccCCCCccee
Q 001072 1059 YCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFF 1092 (1164)
Q Consensus 1059 ~C~~C~l~d~~k~~yHC~~CgiCR~g~gl~~~~f 1092 (1164)
||-+|- || |-+|-+-||||+.|.
T Consensus 26 yCKkCc--------~H---Cq~CF~~KGLGIsYg 48 (86)
T 1tac_A 26 HAKKSA--------YH---SQVAFITKGLGISYG 48 (86)
T ss_dssp STTTTT--------TT---CCCSCSSTTSSSSSC
T ss_pred eecchh--------hh---hhHHHccCCCceEec
Confidence 677763 56 567788999998774
No 117
>2ajj_A NS5A, nonstructural protein 5A; IN-plane membrane anchor domain, amphipathic alpha-helix, membrane protein; NMR {Synthetic} PDB: 2ajm_A 2ajn_A 2ajo_A
Probab=24.45 E-value=67 Score=23.82 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=19.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHH
Q 001072 644 RPIDNIFKFHKAIRKDLEYLD 664 (1164)
Q Consensus 644 ~pID~I~~~HkAIRkdL~~L~ 664 (1164)
-.+|.|+.+|+-|++-+++++
T Consensus 4 YiLdLl~~lh~~~~~~ikk~~ 24 (28)
T 2ajj_A 4 YVLDLIYSLHKQINRGLKKIV 24 (28)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 389999999999999999987
No 118
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=24.11 E-value=33 Score=38.49 Aligned_cols=13 Identities=8% Similarity=0.324 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 001072 940 KAYLIQNLMTSRW 952 (1164)
Q Consensus 940 ka~~~q~lm~~~~ 952 (1164)
.+.+|...+.--|
T Consensus 152 ~~~fi~aaLq~~~ 164 (309)
T 2fiy_A 152 LVPFLGAALQVAW 164 (309)
T ss_dssp GHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555544444
No 119
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.91 E-value=22 Score=29.51 Aligned_cols=9 Identities=33% Similarity=0.899 Sum_probs=4.5
Q ss_pred ceeeccccc
Q 001072 1090 DFFHCMTCN 1098 (1164)
Q Consensus 1090 ~~fHC~~C~ 1098 (1164)
+.++|.+||
T Consensus 36 ~R~~C~kCG 44 (50)
T 3j20_Y 36 DRWACGKCG 44 (50)
T ss_dssp SEEECSSSC
T ss_pred CeEECCCCC
Confidence 445555554
No 120
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=23.87 E-value=36 Score=34.22 Aligned_cols=59 Identities=19% Similarity=0.436 Sum_probs=32.9
Q ss_pred CCcccccccccCcccccccccccccccCCcccChhhhcccCCCCCcccccCceecccccccccCCCCCCCCCCC-Ccccc
Q 001072 978 PSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCS-GLSMA 1056 (1164)
Q Consensus 978 ~~~~~~~~~~~gC~HY~r~c~l~~~cC~k~y~Cr~CHde~~~H~~~r~~~~~~~C~~C~~~Q~~~~~C~~~~C~-~~~~a 1056 (1164)
.+|..|.. =+|.++.+++.- -++|.= |+ + ++++.....|.+++|+ |+-||
T Consensus 83 k~~t~Pkk----~~~~~~~~~~~~---~~~~~~----~~--~----------------~~~~~~~~~c~~~~cg~g~fma 133 (152)
T 3u5c_f 83 XXXXXXXX----XXXXXXXXXXXV---LSYYKV----DA--E----------------GKVTKLRRECSNPTCGAGVFLA 133 (152)
T ss_dssp CCCCCCSC----CCCCCCCCCCCC---CCCSEE----CS--S----------------SCEECCSCBCCSTTSCSSSBEE
T ss_pred cccccccc----ccccccccccce---eeEEEE----cc--C----------------CeEEECcCcCCCccCCCceEec
Confidence 46776654 368888888743 355532 11 1 2334444566665564 34455
Q ss_pred ----eEecccccc
Q 001072 1057 ----KYYCGICKF 1065 (1164)
Q Consensus 1057 ----~y~C~~C~l 1065 (1164)
++||.+|.+
T Consensus 134 ~h~~r~~cgkc~~ 146 (152)
T 3u5c_f 134 NHKDRLYCGKCHS 146 (152)
T ss_dssp ECSSCEEESSSSS
T ss_pred ccCCCcccCCCce
Confidence 677777764
No 121
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=23.81 E-value=16 Score=34.82 Aligned_cols=37 Identities=24% Similarity=0.477 Sum_probs=20.7
Q ss_pred CCcccccccccccCcccccCCCccccHhhHhhhhhhhhhh
Q 001072 1118 NCPICCDFLFTSSATVRALPCGHFMHSDCFQVCSVLCFAF 1157 (1164)
Q Consensus 1118 ~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~~~~~~~~~ 1157 (1164)
.|+.|.+.+......+.++ |..-|..|| .|.+|.+.+
T Consensus 10 ~C~~C~~~I~~~e~~~~a~--~~~~H~~CF-~C~~C~~~L 46 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVK--DKVYHLECF-KCAACQKHF 46 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCS--SCCCCTTTC-BCTTTCCBC
T ss_pred cccCCCCeecCCceEEEEC--CcccccccC-ccccCCCCC
Confidence 4667776665432222222 566677777 366666554
No 122
>2hmq_A Hemerythrin; oxygen transport; 1.66A {Themiste dyscritum} SCOP: a.24.4.1 PDB: 2hmz_A 1hmd_A 1hmo_A 1i4y_A 1i4z_A 1hrb_A
Probab=23.51 E-value=1.3e+02 Score=28.32 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhHHHHHHHH----HHHHHhhCCHHHHHHHHHHHhhcCCHHHHHHHHhhhcCCC
Q 001072 403 ADLIMASIQKHFRNEEVQV----LPLARRHFSPKRQRELLYQSLCVMPLKLIECVLPWLVGSL 461 (1164)
Q Consensus 403 le~L~~~L~~Hf~kEE~qv----fPLl~~~fS~eEq~eL~~~~l~smPl~~L~~vLpWl~~~L 461 (1164)
++.|..-...||..||.-. +|-+..| -++-+.++.++.... .++..+..|++.++
T Consensus 44 l~~L~~y~~~HF~~EE~lM~~~~yp~~~~H--~~~H~~f~~~v~~l~--~l~~~l~~Wl~~HI 102 (113)
T 2hmq_A 44 LNELRRCTGKHFLNEQQLMQASQYAGYAEH--KKAHDDFIHKLDTWD--GDVTYAKNWLVNHI 102 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCTTHHHH--HHHHHHHHHHHHTCC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcHHHH--HHHHHHHHHHHHHHH--HHHHHHHHHHHHHh
Confidence 8888999999999999654 2323333 223333333333322 45555556665543
No 123
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=23.24 E-value=20 Score=34.19 Aligned_cols=10 Identities=20% Similarity=0.727 Sum_probs=4.5
Q ss_pred CcccCCCCCc
Q 001072 1071 VVYHCPFCNL 1080 (1164)
Q Consensus 1071 ~~yHC~~Cgi 1080 (1164)
.|+||..||.
T Consensus 53 GIW~C~kCg~ 62 (103)
T 4a17_Y 53 GIWKCKPCKK 62 (103)
T ss_dssp TEEEETTTTE
T ss_pred ceEEcCCCCC
Confidence 4444444443
No 124
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=22.90 E-value=79 Score=30.01 Aligned_cols=74 Identities=20% Similarity=0.493 Sum_probs=0.0
Q ss_pred ChhhhcccCCCCCcccccCceecccccccccCCCCCCCCCCCC------cccceEeccccccccCCCCcccCCCCCcccc
Q 001072 1010 CRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSG------LSMAKYYCGICKFFDDERVVYHCPFCNLCRV 1083 (1164)
Q Consensus 1010 Cr~CHde~~~H~~~r~~~~~~~C~~C~~~Q~~~~~C~~~~C~~------~~~a~y~C~~C~l~d~~k~~yHC~~CgiCR~ 1083 (1164)
|.+|+.....-...-....-|.|..|....-.. |.. -. +..+.++|..|+ .|.||+.
T Consensus 4 C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~--Cl~---~~~~~~~~~~~~~W~C~~C~------------~C~~C~~ 66 (114)
T 2kwj_A 4 CDFCLGGSNMNKKSGRPEELVSCADCGRSGHPT--CLQ---FTLNMTEAVKTYKWQCIECK------------SCILCGT 66 (114)
T ss_dssp CSSSCCBTTBCTTTCCCCCCEECSSSCCEECTT--TTT---CCHHHHHHHHHTTCCCGGGC------------CCTTTTC
T ss_pred CccCCCCccccccCCCCCCCeEeCCCCCccchh--hCC---ChhhhhhccCCCccCccccC------------ccCcccc
Q ss_pred cCCCCcceeecccccccc
Q 001072 1084 GRGLGVDFFHCMTCNCCL 1101 (1164)
Q Consensus 1084 g~gl~~~~fHC~~C~~C~ 1101 (1164)
+.. +.+...|+.|..-+
T Consensus 67 ~~~-~~~ll~Cd~C~~~y 83 (114)
T 2kwj_A 67 SEN-DDQLLFCDDCDRGY 83 (114)
T ss_dssp CTT-TTTEEECSSSCCEE
T ss_pred cCC-CCceEEcCCCCccc
No 125
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=22.53 E-value=1.2e+02 Score=32.57 Aligned_cols=47 Identities=28% Similarity=0.640 Sum_probs=22.2
Q ss_pred CCCCCcccccCceecccccccccCCCCCCCCCCCCcccceEeccccccccCCCCcccCCCC
Q 001072 1018 SDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFC 1078 (1164)
Q Consensus 1018 ~~H~~~r~~~~~~~C~~C~~~Q~~~~~C~~~~C~~~~~a~y~C~~C~l~d~~k~~yHC~~C 1078 (1164)
.++++.| .....|..|. ......|.. | +|.+|+--++....-.|+.|
T Consensus 149 ~~~~~~r--~~~~~C~~c~--~~~~w~C~~--c--------~C~vC~~~~~~~~lL~CD~C 195 (226)
T 3ask_A 149 VDNPMRR--KSGPSCKHCK--DDVNRLCRV--C--------ACHLCGGRQDPDKQLMCDEC 195 (226)
T ss_dssp CSCCCCC--CCSCCCTTTT--TCTTSCCTT--T--------SCSSSCCCCC--CCEECSSS
T ss_pred ccccccc--cCCccccccc--CCcCEecCC--C--------CCcCCCCCCCCCCeEEcCCC
Confidence 3455656 3344566663 112334543 2 35666655544444455555
No 126
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=22.49 E-value=15 Score=31.90 Aligned_cols=35 Identities=26% Similarity=0.591 Sum_probs=21.4
Q ss_pred CCcccccccccccCcccccCCCccccHhhHhhhhhhhhh
Q 001072 1118 NCPICCDFLFTSSATVRALPCGHFMHSDCFQVCSVLCFA 1156 (1164)
Q Consensus 1118 ~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~~~~~~~~ 1156 (1164)
.|+.|.+.+..... +..+ |..-|..||. |.+|.+.
T Consensus 2 ~C~~C~~~I~~~~~-v~a~--~~~~H~~CF~-C~~C~~~ 36 (76)
T 1iml_A 2 KCPKCDKEVYFAER-VTSL--GKDWHRPCLK-CEKCGKT 36 (76)
T ss_dssp BCTTTSSBCCGGGE-EEET--TEEEETTTCB-CTTTCCB
T ss_pred cCCCCCCEEECceE-EEEC--CccccCCCCC-ccccCcc
Confidence 36777777764322 3334 7777777773 6666654
No 127
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=22.47 E-value=18 Score=34.41 Aligned_cols=38 Identities=21% Similarity=0.428 Sum_probs=27.4
Q ss_pred CCCcccccccccccCcccccCCCcccc--HhhHhhhhhhhhhh
Q 001072 1117 TNCPICCDFLFTSSATVRALPCGHFMH--SDCFQVCSVLCFAF 1157 (1164)
Q Consensus 1117 ~~CpiC~e~lfts~~~~~~l~CGH~~H--~~C~~~~~~~~~~~ 1157 (1164)
..|+.|.+.+-.....+. --|...| ..|| .|.+|.+.+
T Consensus 64 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~~~CF-~C~~C~~~l 103 (126)
T 2xqn_T 64 VVCQGCHNAIDPEVQRVT--YNNFSWHASTECF-LCSCCSKCL 103 (126)
T ss_dssp CBCTTTCSBCCTTSCEEE--ETTEEEESSTTTS-BCTTTCCBC
T ss_pred ccCcccCCcCCcCceEEE--CCCCEeeCCCCCc-CcCCCCCcc
Confidence 569999998875433233 3478899 9999 488887764
No 128
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.38 E-value=20 Score=31.33 Aligned_cols=38 Identities=26% Similarity=0.534 Sum_probs=22.1
Q ss_pred CCCcccccccccccCcccccCCCccccHhhHhhhhhhhhhh
Q 001072 1117 TNCPICCDFLFTSSATVRALPCGHFMHSDCFQVCSVLCFAF 1157 (1164)
Q Consensus 1117 ~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~~~~~~~~~ 1157 (1164)
..|+.|.+.+......+.++ |..-|..||. |.+|.+.+
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~--~~~~H~~CF~-C~~C~~~L 53 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEYK--GTVWHKDCFT-CSNCKQVI 53 (82)
T ss_dssp CBCSSSCCBCCSSSCEEECS--SCEEETTTCC-CSSSCCCC
T ss_pred CcCccCCcccccCceEEEEC--ccccccccCc-hhhCCCcc
Confidence 46777777776432223223 6677777773 66666543
No 129
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.22 E-value=21 Score=30.81 Aligned_cols=39 Identities=23% Similarity=0.535 Sum_probs=24.9
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHhhhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQVCSVLCFAF 1157 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~~~~~~~~~ 1157 (1164)
...|+.|.+.+......+.+ =|..-|..||. |..|.+.+
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF~-C~~C~~~L 49 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCFV-CAQCFQQF 49 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEE--TTEEECTTTCC-CTTTCCCC
T ss_pred CCCchhcCCccCCCceEEEe--CccEeccccCe-ECCCCCCC
Confidence 45788888888743332222 36777888884 77776654
No 130
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=22.03 E-value=24 Score=28.65 Aligned_cols=14 Identities=36% Similarity=0.712 Sum_probs=6.3
Q ss_pred ccCCCCcccCCCCC
Q 001072 1066 FDDERVVYHCPFCN 1079 (1164)
Q Consensus 1066 ~d~~k~~yHC~~Cg 1079 (1164)
||.++..+.|..||
T Consensus 18 ~d~~~gelvC~~CG 31 (50)
T 1pft_A 18 YDPERGEIVCAKCG 31 (50)
T ss_dssp EETTTTEEEESSSC
T ss_pred EcCCCCeEECcccC
Confidence 33334444455554
No 131
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=21.94 E-value=21 Score=35.81 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=25.8
Q ss_pred CCCcccccccccccCcccccCCCccccHhhHhhhhhhhhhh
Q 001072 1117 TNCPICCDFLFTSSATVRALPCGHFMHSDCFQVCSVLCFAF 1157 (1164)
Q Consensus 1117 ~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~~~~~~~~~ 1157 (1164)
..|..|.+.+..... + +-.=|..-|..|| .|.+|.+.+
T Consensus 66 ~~C~~C~~~I~~~~~-v-~~a~~~~~H~~CF-~C~~C~~~L 103 (169)
T 2rgt_A 66 TKCAACQLGIPPTQV-V-RRAQDFVYHLHCF-ACVVCKRQL 103 (169)
T ss_dssp CBCTTTCCBCCTTSE-E-EEETTEEEEGGGC-BCTTTCCBC
T ss_pred ccccccccccCCCcE-E-EEcCCceEeeCCC-cCCCCCCCC
Confidence 468888888765321 1 1234788899999 488887764
No 132
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.71 E-value=23 Score=32.59 Aligned_cols=9 Identities=22% Similarity=1.065 Sum_probs=4.6
Q ss_pred eeecccccc
Q 001072 1091 FFHCMTCNC 1099 (1164)
Q Consensus 1091 ~fHC~~C~~ 1099 (1164)
-.||.+|+.
T Consensus 53 IW~C~kCg~ 61 (83)
T 3j21_i 53 IWQCQKCGA 61 (83)
T ss_dssp EEEETTTCC
T ss_pred eEEcCCCCC
Confidence 455555543
No 133
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=21.69 E-value=73 Score=28.60 Aligned_cols=71 Identities=24% Similarity=0.626 Sum_probs=40.5
Q ss_pred CCCCcccccccccCcccccccccccccccCCcccChhhhcccCCCCCcccccCceecccccccccCCCCCCCCCCCCccc
Q 001072 976 CSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSM 1055 (1164)
Q Consensus 976 ~~~~~~~~~~~~~gC~HY~r~c~l~~~cC~k~y~Cr~CHde~~~H~~~r~~~~~~~C~~C~~~Q~~~~~C~~~~C~~~~~ 1055 (1164)
.+|+|.++ .|+|-+.+-.-+|+-| .|..|...... ...+.|-.|...-- ..|..|.=..+..
T Consensus 4 ~~~~~~~~-----~c~~c~~~~~W~C~~C----~C~vC~~~~d~-------~~ll~CD~C~~~yH--~~Cl~PpL~~~P~ 65 (77)
T 3shb_A 4 GSPEFSGP-----SCKHCKDDVNRLCRVC----ACHLCGGRQDP-------DKQLMCDECDMAFH--IYCLDPPLSSVPS 65 (77)
T ss_dssp -----CCC-----SCTTTTTCTTSCCTTT----SBTTTCCCSCG-------GGEEECTTTCCEEE--TTTSSSCCSSCCS
T ss_pred CCcccCCc-----cccccCCCCCCCCCCC----cCCccCCCCCC-------cceeEeCCCCCccC--cccCCCcccCCCC
Confidence 45555543 6999998888888888 38888765321 34678888865332 3444431112344
Q ss_pred ce-Eeccccc
Q 001072 1056 AK-YYCGICK 1064 (1164)
Q Consensus 1056 a~-y~C~~C~ 1064 (1164)
+. +||+.|+
T Consensus 66 g~~W~C~~C~ 75 (77)
T 3shb_A 66 EDEWYCPECR 75 (77)
T ss_dssp SSCCCCTTTC
T ss_pred CCceECcCcc
Confidence 45 7777774
No 134
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=21.61 E-value=17 Score=30.71 Aligned_cols=39 Identities=23% Similarity=0.529 Sum_probs=25.4
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHhhhhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQVCSVLCFAF 1157 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~~~~~~~~~ 1157 (1164)
...|+.|.+.+......+. .=|..-|..||. |.+|.+.+
T Consensus 11 ~~~C~~C~~~i~~~e~~~~--~~~~~~H~~CF~-C~~C~~~L 49 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN--SNGELYHEQCFV-CAQCFQQF 49 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE--ETTEEEETTTSS-CTTTCCCC
T ss_pred CccchhcCccccCCceEEE--eCcCeeCcCCCc-ccCCCCCC
Confidence 4568888888775432222 236677888886 77887664
No 135
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=20.55 E-value=2e+02 Score=27.37 Aligned_cols=18 Identities=22% Similarity=0.600 Sum_probs=12.4
Q ss_pred eecccccccccCCCCCCC
Q 001072 1030 MMCMRCLKVQPVGPVCTT 1047 (1164)
Q Consensus 1030 ~~C~~C~~~Q~~~~~C~~ 1047 (1164)
+.|-.|+...-++..|.+
T Consensus 43 ~~C~~Cg~~GH~~~~C~~ 60 (124)
T 2lli_A 43 IQCSKCDEVGHYRSQCPH 60 (124)
T ss_dssp SCSSSSSCSSSSTTTSCC
T ss_pred ccccccCCCCCccccCcC
Confidence 667777777766666654
Done!