Query 001072
Match_columns 1164
No_of_seqs 416 out of 672
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 09:37:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001072.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/001072hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dkta2 g.93.1.1 (A:82-137) RI 99.9 1.8E-26 1.3E-30 191.6 3.0 55 1056-1112 1-56 (56)
2 d2dkta1 g.89.1.1 (A:8-81) RING 99.5 1.3E-15 9.2E-20 135.0 4.2 72 981-1055 3-74 (74)
3 d1ur6b_ g.44.1.1 (B:) Not-4 N- 98.1 3.5E-07 2.6E-11 74.7 1.6 40 1118-1157 2-49 (52)
4 d1iyma_ g.44.1.1 (A:) EL5 RING 97.7 3.4E-06 2.4E-10 69.6 1.5 42 1117-1158 6-54 (55)
5 d1g25a_ g.44.1.1 (A:) TFIIH Ma 97.7 5E-06 3.6E-10 70.6 1.9 42 1116-1157 3-53 (65)
6 d1chca_ g.44.1.1 (A:) Immediat 97.4 1.8E-05 1.3E-09 67.6 1.7 39 1116-1157 5-50 (68)
7 d1v87a_ g.44.1.1 (A:) Deltex p 97.3 3.3E-05 2.4E-09 71.8 2.1 44 1114-1157 23-92 (114)
8 d1fbva4 g.44.1.1 (A:356-434) C 97.1 7.3E-05 5.3E-09 65.6 2.3 39 1115-1157 22-68 (79)
9 d3dplr1 g.44.1.1 (R:19-106) RI 97.1 8.9E-05 6.4E-09 66.2 2.2 45 1115-1159 20-85 (88)
10 d1bora_ g.44.1.1 (A:) Acute pr 96.9 5.8E-05 4.3E-09 62.3 -0.4 38 1117-1158 7-48 (56)
11 d1jm7a_ g.44.1.1 (A:) brca1 RI 96.7 0.00022 1.6E-08 65.1 1.5 37 1117-1157 22-68 (103)
12 d1jm7b_ g.44.1.1 (B:) bard1 RI 96.5 0.00025 1.8E-08 64.1 0.7 38 1117-1157 23-65 (97)
13 d1vyxa_ g.44.1.3 (A:) IE1B pro 95.5 0.0022 1.6E-07 52.7 1.9 46 1112-1157 2-57 (60)
14 d2baya1 g.44.1.2 (A:1-56) Pre- 95.5 0.002 1.5E-07 52.5 1.5 37 1118-1157 2-45 (56)
15 d1rmda2 g.44.1.1 (A:1-86) V(D) 95.1 0.0032 2.3E-07 56.0 1.6 37 1117-1157 24-68 (86)
16 d2c2la2 g.44.1.2 (A:225-304) S 94.0 0.0062 4.5E-07 52.8 0.9 38 1116-1157 7-52 (80)
17 d1wima_ g.44.1.1 (A:) UbcM4-in 93.8 0.012 8.9E-07 52.0 2.6 35 1114-1149 3-37 (94)
18 d1t1ha_ g.44.1.2 (A:) E3 ubiqu 93.7 0.0088 6.4E-07 51.4 1.2 37 1116-1156 8-52 (78)
19 d1vd4a_ g.41.3.1 (A:) Transcri 82.8 0.25 1.8E-05 41.0 2.1 27 1053-1079 10-46 (62)
20 d2dkta2 g.93.1.1 (A:82-137) RI 77.8 0.31 2.3E-05 39.5 1.0 24 1078-1102 5-28 (56)
21 d2jnea1 g.41.18.1 (A:1-71) Hyp 69.6 0.6 4.3E-05 39.4 0.8 58 999-1073 3-68 (71)
22 d2fcwb1 g.12.1.1 (B:86-124) Li 66.8 1.1 7.8E-05 33.6 1.7 32 1089-1121 5-39 (39)
23 d1wgma_ g.44.1.2 (A:) Ubiquiti 65.6 1 7.6E-05 39.9 1.6 38 1116-1157 22-67 (98)
24 d1dx8a_ g.41.5.1 (A:) Rubredox 57.6 2.4 0.00017 35.7 2.3 16 1053-1068 3-19 (70)
25 d2dsxa1 g.41.5.1 (A:1-52) Rubr 55.8 2.6 0.00019 33.6 2.1 25 1055-1079 1-43 (52)
26 d1iroa_ g.41.5.1 (A:) Rubredox 54.2 2.8 0.00021 33.4 2.1 14 1055-1068 1-15 (53)
27 d1wiia_ g.41.3.4 (A:) Hypothet 54.2 2.3 0.00017 37.1 1.7 35 1070-1104 21-60 (85)
28 d6rxna_ g.41.5.1 (A:) Rubredox 48.4 3.7 0.00027 31.7 1.9 25 1055-1079 1-36 (45)
29 d1mm2a_ g.50.1.2 (A:) Mi2-beta 42.8 9.8 0.00071 30.3 3.8 27 1074-1104 8-34 (61)
30 d1brfa_ g.41.5.1 (A:) Rubredox 38.0 6.7 0.00049 31.2 2.0 24 1056-1079 1-42 (53)
31 d1jj2y_ g.41.8.1 (Y:) Ribosoma 36.8 4.1 0.0003 34.4 0.5 25 1056-1080 26-53 (73)
32 d1we9a_ g.50.1.2 (A:) PHD fing 36.3 5.4 0.0004 32.1 1.2 35 1114-1148 4-38 (64)
33 d2mhra_ a.24.4.1 (A:) Myohemer 32.8 18 0.0013 32.3 4.4 20 402-421 43-62 (118)
34 d1vqoz1 g.41.8.1 (Z:10-82) Rib 30.3 6.1 0.00044 33.4 0.5 9 1091-1099 45-53 (73)
35 d1zbdb_ g.50.1.1 (B:) Effector 26.6 7.4 0.00054 35.5 0.4 42 1115-1156 47-100 (124)
36 d1s24a_ g.41.5.1 (A:) Two-iron 25.3 13 0.00097 29.7 1.7 11 1055-1065 2-12 (56)
37 d2dlqa2 g.37.1.1 (A:35-62) GLI 25.1 11 0.00081 25.5 1.0 11 1092-1102 2-12 (28)
38 d2hmza_ a.24.4.1 (A:) Hemeryth 25.1 34 0.0025 30.3 4.8 40 402-443 43-82 (113)
39 d1iyma_ g.44.1.1 (A:) EL5 RING 24.5 21 0.0016 27.7 2.8 10 1117-1126 44-53 (55)
40 d1we9a_ g.50.1.2 (A:) PHD fing 22.8 16 0.0012 29.1 1.8 53 1055-1124 4-57 (64)
41 d1wepa_ g.50.1.2 (A:) PHD fing 22.1 18 0.0013 30.2 2.0 55 1053-1125 8-63 (79)
42 d1dura_ d.58.1.1 (A:) Ferredox 20.9 11 0.00083 29.3 0.4 16 1088-1103 30-45 (55)
43 d2fiya1 e.59.1.1 (A:19-308) Fd 20.3 20 0.0015 37.2 2.4 19 683-701 29-47 (290)
No 1
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.92 E-value=1.8e-26 Score=191.59 Aligned_cols=55 Identities=51% Similarity=1.290 Sum_probs=52.7
Q ss_pred ceEeccccccccCCCCcccCCCCCcccccCCCCcceeecccccccccccc-ccccccc
Q 001072 1056 AKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKL-VDHKCRE 1112 (1164)
Q Consensus 1056 a~y~C~~C~l~d~~k~~yHC~~CgiCR~g~gl~~~~fHC~~C~~C~~~~~-~~H~C~e 1112 (1164)
|+|||+|||||||+|++|||++|||||||++ +|||||++||+|+++++ ++|+|+|
T Consensus 1 G~YfC~iC~l~dddk~~yHC~~CgiCRvG~~--~~ffHC~~C~~C~~~~l~~~H~CiE 56 (56)
T d2dkta2 1 GEYYCSICHLFDKDKRQYHCESCGICRIGPK--EDFFHCLKCNLCLTTNLRGKHKCIE 56 (56)
T ss_dssp CSEECSSSCCEECSSSEEEETTTTEEEESCG--GGEEEETTTTEEEEGGGSSSSCCSC
T ss_pred CceECCcCCcccCCCCcccCCCCCceeecCC--ccccccCccccccCcccCCCccccC
Confidence 6899999999999999999999999999984 79999999999999999 9999997
No 2
>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.53 E-value=1.3e-15 Score=135.00 Aligned_cols=72 Identities=43% Similarity=0.974 Sum_probs=67.3
Q ss_pred ccccccccCcccccccccccccccCCcccChhhhcccCCCCCcccccCceecccccccccCCCCCCCCCCCCccc
Q 001072 981 RDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSM 1055 (1164)
Q Consensus 981 ~~~~~~~~gC~HY~r~c~l~~~cC~k~y~Cr~CHde~~~H~~~r~~~~~~~C~~C~~~Q~~~~~C~~~~C~~~~~ 1055 (1164)
+|+.+..+||+||+|+|+|+|++||++|+|+.||++...|.++|+.++.++|..|++.|++.+.|.+ | |..|
T Consensus 3 ~~~~~~~~gC~HY~r~~~l~C~~Cg~~~~C~~C~~~lt~H~~~~k~~~~l~CH~Cg~~~~~~~~C~~--C-gs~F 74 (74)
T d2dkta1 3 RNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTCED--C-STLF 74 (74)
T ss_dssp CCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTSSSCCCSSSCCCEEESSSCCEECSCSBCSS--S-CCBS
T ss_pred cCCCCCCCCCcccCcceEEEcCcCcCeeeCCCCCCcccccccccccCCEEEeccCCCcccCCCcCCC--C-CCCC
Confidence 5777889999999999999999999999999999999999999999999999999999999999987 6 6554
No 3
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.09 E-value=3.5e-07 Score=74.67 Aligned_cols=40 Identities=20% Similarity=0.524 Sum_probs=33.9
Q ss_pred CCcccccccccccCcccccCCCccccHhhHhh--------hhhhhhhh
Q 001072 1118 NCPICCDFLFTSSATVRALPCGHFMHSDCFQV--------CSVLCFAF 1157 (1164)
Q Consensus 1118 ~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~--------~~~~~~~~ 1157 (1164)
.||||++.+-.....+..++|||.+|..|++. ||+|++.|
T Consensus 2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~ 49 (52)
T d1ur6b_ 2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 49 (52)
T ss_dssp EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBC
T ss_pred CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcC
Confidence 59999999876665566789999999999975 99999865
No 4
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=97.74 E-value=3.4e-06 Score=69.60 Aligned_cols=42 Identities=21% Similarity=0.560 Sum_probs=34.4
Q ss_pred CCCcccccccccccCcccccCCCccccHhhHhh-------hhhhhhhhh
Q 001072 1117 TNCPICCDFLFTSSATVRALPCGHFMHSDCFQV-------CSVLCFAFF 1158 (1164)
Q Consensus 1117 ~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~-------~~~~~~~~~ 1158 (1164)
..||||++.+-++...+...+|||..|..|+.. ||+|++.++
T Consensus 6 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~ 54 (55)
T d1iyma_ 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence 459999999887655444457999999999986 999998875
No 5
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.69 E-value=5e-06 Score=70.58 Aligned_cols=42 Identities=19% Similarity=0.533 Sum_probs=34.7
Q ss_pred CCCCcccccccccccCcc-cccCCCccccHhhHhh--------hhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATV-RALPCGHFMHSDCFQV--------CSVLCFAF 1157 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~-~~l~CGH~~H~~C~~~--------~~~~~~~~ 1157 (1164)
+..||||++.++.+...+ .+.+|||.+|..|... ||+|++.+
T Consensus 3 d~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i 53 (65)
T d1g25a_ 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCC
T ss_pred CCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCc
Confidence 468999999988775544 4579999999999975 99998765
No 6
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}
Probab=97.42 E-value=1.8e-05 Score=67.57 Aligned_cols=39 Identities=28% Similarity=0.539 Sum_probs=32.6
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHhh-------hhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV-------CSVLCFAF 1157 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~-------~~~~~~~~ 1157 (1164)
-..||||++++.+ ++..+||||..|..|+.. ||+|++.+
T Consensus 5 ~d~C~IC~~~~~~---~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i 50 (68)
T d1chca_ 5 AERCPICLEDPSN---YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50 (68)
T ss_dssp CCCCSSCCSCCCS---CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCC
T ss_pred CCCCccCCcCccC---CcEEeCCCCcCcHHHHHHHHHhCCcCCCCCcch
Confidence 4579999999753 566799999999999975 99998754
No 7
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.30 E-value=3.3e-05 Score=71.76 Aligned_cols=44 Identities=27% Similarity=0.504 Sum_probs=33.2
Q ss_pred CcCCCCccccccccccc--------------CcccccCCCccccHhhHh------------hhhhhhhhh
Q 001072 1114 GLETNCPICCDFLFTSS--------------ATVRALPCGHFMHSDCFQ------------VCSVLCFAF 1157 (1164)
Q Consensus 1114 ~~~~~CpiC~e~lfts~--------------~~~~~l~CGH~~H~~C~~------------~~~~~~~~~ 1157 (1164)
..+..||||++.|.... ..+..++|||..|..|.. .||+|+..+
T Consensus 23 ~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~ 92 (114)
T d1v87a_ 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred cccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchh
Confidence 34567999999986532 234568999999999975 399997543
No 8
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.12 E-value=7.3e-05 Score=65.62 Aligned_cols=39 Identities=28% Similarity=0.626 Sum_probs=31.1
Q ss_pred cCCCCcccccccccccCcccccCCCccccHhhHhh--------hhhhhhhh
Q 001072 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV--------CSVLCFAF 1157 (1164)
Q Consensus 1115 ~~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~--------~~~~~~~~ 1157 (1164)
....||||++.+.+ .+++||||..|..|... ||+|++.+
T Consensus 22 ~~~~C~IC~~~~~~----~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i 68 (79)
T d1fbva4 22 TFQLCKICAENDKD----VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 68 (79)
T ss_dssp CTTBCTTTSSSBCC----EECSSSCCEECHHHHHHHHHTTCCSCTTTCCCC
T ss_pred CCCCCccCCCcCCC----eEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCc
Confidence 34579999987643 45699999999999843 99999865
No 9
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.06 E-value=8.9e-05 Score=66.20 Aligned_cols=45 Identities=27% Similarity=0.536 Sum_probs=33.3
Q ss_pred cCCCCcccccccccc--------------cCcccccCCCccccHhhHhh-------hhhhhhhhhc
Q 001072 1115 LETNCPICCDFLFTS--------------SATVRALPCGHFMHSDCFQV-------CSVLCFAFFF 1159 (1164)
Q Consensus 1115 ~~~~CpiC~e~lfts--------------~~~~~~l~CGH~~H~~C~~~-------~~~~~~~~~~ 1159 (1164)
...+|+||.+.+-.. ..++..++|||..|..|... ||+|++.+-|
T Consensus 20 ~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 85 (88)
T d3dplr1 20 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 85 (88)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCcccc
Confidence 345677776655432 22466789999999999986 9999998755
No 10
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.90 E-value=5.8e-05 Score=62.28 Aligned_cols=38 Identities=24% Similarity=0.514 Sum_probs=30.6
Q ss_pred CCCcccccccccccCcccccCCCccccHhhHhh----hhhhhhhhh
Q 001072 1117 TNCPICCDFLFTSSATVRALPCGHFMHSDCFQV----CSVLCFAFF 1158 (1164)
Q Consensus 1117 ~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~----~~~~~~~~~ 1158 (1164)
-.||||++.+.+ .+.+||||..|..|.+. ||+|++.+-
T Consensus 7 l~C~IC~~~~~~----p~~lpCgH~fC~~Ci~~~~~~CP~Cr~~~~ 48 (56)
T d1bora_ 7 LRCQQCQAEAKC----PKLLPCLHTLCSGCLEASGMQCPICQAPWP 48 (56)
T ss_dssp SSCSSSCSSCBC----CSCSTTSCCSBTTTCSSSSSSCSSCCSSSS
T ss_pred CCCcccCcccCC----CEEecCCCHHhHHHHHcCCCcCcCCCCccc
Confidence 379999987643 35689999999999864 999988764
No 11
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.66 E-value=0.00022 Score=65.10 Aligned_cols=37 Identities=24% Similarity=0.629 Sum_probs=29.7
Q ss_pred CCCcccccccccccCcccccCCCccccHhhHh----------hhhhhhhhh
Q 001072 1117 TNCPICCDFLFTSSATVRALPCGHFMHSDCFQ----------VCSVLCFAF 1157 (1164)
Q Consensus 1117 ~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~----------~~~~~~~~~ 1157 (1164)
-.||||++++. .|+. ++|||..+..|+. .||+|++.+
T Consensus 22 l~CpIC~~~~~---~pv~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 68 (103)
T d1jm7a_ 22 LECPICLELIK---EPVS-TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68 (103)
T ss_dssp TSCSSSCCCCS---SCCB-CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCC
T ss_pred cCCCccCchhC---CeEE-cCCCCchhhHHHHHHHHHCCCCCcCcCCCCcC
Confidence 46999998764 3554 7999999999985 399998765
No 12
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.50 E-value=0.00025 Score=64.12 Aligned_cols=38 Identities=26% Similarity=0.509 Sum_probs=31.3
Q ss_pred CCCcccccccccccCcccccCCCccccHhhHhh-----hhhhhhhh
Q 001072 1117 TNCPICCDFLFTSSATVRALPCGHFMHSDCFQV-----CSVLCFAF 1157 (1164)
Q Consensus 1117 ~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~-----~~~~~~~~ 1157 (1164)
-.||||.+.+. .||...+|||+.+..|+.. ||+|+..+
T Consensus 23 l~C~IC~~~~~---~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~ 65 (97)
T d1jm7b_ 23 LRCSRCTNILR---EPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPA 65 (97)
T ss_dssp TSCSSSCSCCS---SCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBC
T ss_pred CCCccCCchhh---cCceeCCCCCchhHHHHHHHHhccccccCCcC
Confidence 37999999774 4676679999999999864 99998754
No 13
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}
Probab=95.48 E-value=0.0022 Score=52.74 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=30.8
Q ss_pred cCCcCCCCcccccccccc-cCcccccCCCccccHhhHhh---------hhhhhhhh
Q 001072 1112 EKGLETNCPICCDFLFTS-SATVRALPCGHFMHSDCFQV---------CSVLCFAF 1157 (1164)
Q Consensus 1112 e~~~~~~CpiC~e~lfts-~~~~~~l~CGH~~H~~C~~~---------~~~~~~~~ 1157 (1164)
|+....-|+||++.+=.. ..+..-.+|||++|..|.+. ||+|++.+
T Consensus 2 eded~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~ 57 (60)
T d1vyxa_ 2 EDEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57 (60)
T ss_dssp TTCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCee
Confidence 334456799999875221 12223345579999999975 99998764
No 14
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=95.47 E-value=0.002 Score=52.53 Aligned_cols=37 Identities=8% Similarity=0.035 Sum_probs=30.6
Q ss_pred CCcccccccccccCcccccCCCccccHhhHhh-------hhhhhhhh
Q 001072 1118 NCPICCDFLFTSSATVRALPCGHFMHSDCFQV-------CSVLCFAF 1157 (1164)
Q Consensus 1118 ~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~-------~~~~~~~~ 1157 (1164)
-||||++.+. .||....|||..+..|... ||+|++.+
T Consensus 2 ~C~Ic~~~~~---~Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l 45 (56)
T d2baya1 2 LCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPL 45 (56)
T ss_dssp CCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBC
T ss_pred CCccCCchHH---hcCccCCCCCcccHHHHHHHHhhccCCCccCCcC
Confidence 4999998774 4777778999999999865 99998754
No 15
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=95.07 E-value=0.0032 Score=56.00 Aligned_cols=37 Identities=22% Similarity=0.539 Sum_probs=30.0
Q ss_pred CCCcccccccccccCcccccCCCccccHhhHhh--------hhhhhhhh
Q 001072 1117 TNCPICCDFLFTSSATVRALPCGHFMHSDCFQV--------CSVLCFAF 1157 (1164)
Q Consensus 1117 ~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~--------~~~~~~~~ 1157 (1164)
-.||||++.+.+ | +.++|||.....|... ||+|+..+
T Consensus 24 l~C~IC~~~~~~---p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~ 68 (86)
T d1rmda2 24 ISCQICEHILAD---P-VETSCKHLFCRICILRCLKVMGSYCPSCRYPC 68 (86)
T ss_dssp TBCTTTCSBCSS---E-EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred cCCccCCcchhc---c-eecCCCChhhHHHHHHHHhhCCCcCcccCCCC
Confidence 359999987743 3 4589999999999975 99998764
No 16
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=94.01 E-value=0.0062 Score=52.75 Aligned_cols=38 Identities=11% Similarity=0.030 Sum_probs=30.3
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHhh--------hhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV--------CSVLCFAF 1157 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~--------~~~~~~~~ 1157 (1164)
+-.||||++.|-+ || .++|||..-..|... ||+|+..+
T Consensus 7 ~l~CpIc~~l~~d---Pv-~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l 52 (80)
T d2c2la2 7 YLCGKISFELMRE---PC-ITPSGITYDRKDIEEHLQRVGHFNPVTRSPL 52 (80)
T ss_dssp TTBCTTTCSBCSS---EE-ECSSCCEEETTHHHHHHHHTCSSCTTTCCCC
T ss_pred cccCcCcCchhhh---hc-ccCCcCeecHHHHHHHHhcCCccCCCccccc
Confidence 4569999987754 55 479999999999765 89988764
No 17
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.82 E-value=0.012 Score=52.02 Aligned_cols=35 Identities=11% Similarity=0.313 Sum_probs=26.8
Q ss_pred CcCCCCcccccccccccCcccccCCCccccHhhHhh
Q 001072 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV 1149 (1164)
Q Consensus 1114 ~~~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~ 1149 (1164)
+...+||||.+.+-. ...+..++|||..+..|+..
T Consensus 3 ~~~~~C~IC~~~~~~-~~~~~~~~C~H~fC~~Cl~~ 37 (94)
T d1wima_ 3 SGSSGCKLCLGEYPV-EQMTTIAQCQCIFCTLCLKQ 37 (94)
T ss_dssp CSBCCCSSSCCCCBG-GGEEEETTTTEEEEHHHHHH
T ss_pred CCCCcCccCCCcccC-CceEEECCCCCEeCCcCHHH
Confidence 345789999987743 34455679999999999975
No 18
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=93.66 E-value=0.0088 Score=51.43 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=29.7
Q ss_pred CCCCcccccccccccCcccccCCCccccHhhHhh--------hhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQV--------CSVLCFA 1156 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~~--------~~~~~~~ 1156 (1164)
+-.||||++.|.+ || .++|||..-+.|+.. ||+|+..
T Consensus 8 ~l~CpIc~~~m~d---PV-~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~ 52 (78)
T d1t1ha_ 8 YFRCPISLELMKD---PV-IVSTGQTYERSSIQKWLDAGHKTCPKSQET 52 (78)
T ss_dssp SSSCTTTSCCCSS---EE-EETTTEEEEHHHHHHHHTTTCCBCTTTCCB
T ss_pred cCCCcCcCchhhC---ce-EccCCCcchHHHHHHHHHHCCCCCCccccc
Confidence 4579999998866 55 479999999999865 7777754
No 19
>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=82.76 E-value=0.25 Score=41.00 Aligned_cols=27 Identities=30% Similarity=0.894 Sum_probs=21.7
Q ss_pred cccceEeccccc----------cccCCCCcccCCCCC
Q 001072 1053 LSMAKYYCGICK----------FFDDERVVYHCPFCN 1079 (1164)
Q Consensus 1053 ~~~a~y~C~~C~----------l~d~~k~~yHC~~Cg 1079 (1164)
..-+.|.|+.|+ |+|.+...|||..||
T Consensus 10 ~~~~~y~Cp~C~~~ys~Lda~~L~d~~~~~F~C~~C~ 46 (62)
T d1vd4a_ 10 TNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCH 46 (62)
T ss_dssp CSSSEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSC
T ss_pred ccCCceECCCCCCCcchhhHHHhcCcCCCeEEecCCC
Confidence 456789999997 677778888888886
No 20
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=77.82 E-value=0.31 Score=39.54 Aligned_cols=24 Identities=25% Similarity=0.825 Sum_probs=17.5
Q ss_pred CCcccccCCCCcceeeccccccccc
Q 001072 1078 CNLCRVGRGLGVDFFHCMTCNCCLA 1102 (1164)
Q Consensus 1078 CgiCR~g~gl~~~~fHC~~C~~C~~ 1102 (1164)
|+||+..-. -++.|||+.||.|--
T Consensus 5 C~iC~l~dd-dk~~yHC~~CgiCRv 28 (56)
T d2dkta2 5 CSICHLFDK-DKRQYHCESCGICRI 28 (56)
T ss_dssp CSSSCCEEC-SSSEEEETTTTEEEE
T ss_pred CCcCCcccC-CCCcccCCCCCceee
Confidence 566666633 357899999999973
No 21
>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}
Probab=69.57 E-value=0.6 Score=39.43 Aligned_cols=58 Identities=24% Similarity=0.618 Sum_probs=35.9
Q ss_pred ccccccCC-------cccChhhhcccCCCCCcccccCceecccccccccCCCCCCCCCCCCcccceEeccccc-cccCCC
Q 001072 999 LRAACCGK-------LFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICK-FFDDER 1070 (1164)
Q Consensus 999 l~~~cC~k-------~y~Cr~CHde~~~H~~~r~~~~~~~C~~C~~~Q~~~~~C~~~~C~~~~~a~y~C~~C~-l~d~~k 1070 (1164)
+.||.|+. -|.|..|+..- .....|..|..+..+-+.| | .+.|||+.|+ |....+
T Consensus 3 ~~CP~C~~eL~~~~~~~~C~~C~~~~---------~~~a~CPdC~~~Le~LkAC------G--AvdYFC~~cn~LiSKkr 65 (71)
T d2jnea1 3 LHCPQCQHVLDQDNGHARCRSCGEFI---------EMKALCPDCHQPLQVLKAC------G--AVDYFCQHGHGLISKKR 65 (71)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEE---------EEEEECTTTCSBCEEEEET------T--EEEEEETTTTEEECTTT
T ss_pred CcCCCccCcccccCCCEehhhhhhhh---------eeEEeCCccccHHHHHHhc------c--chhhhhccCCceeEeee
Confidence 56777743 46676665431 3467788887776665554 3 5789999997 333334
Q ss_pred Ccc
Q 001072 1071 VVY 1073 (1164)
Q Consensus 1071 ~~y 1073 (1164)
-.|
T Consensus 66 v~f 68 (71)
T d2jnea1 66 VEF 68 (71)
T ss_dssp SEE
T ss_pred EEE
Confidence 444
No 22
>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=66.80 E-value=1.1 Score=33.64 Aligned_cols=32 Identities=25% Similarity=0.736 Sum_probs=28.3
Q ss_pred cceeecccccccccccc---cccccccCCcCCCCcc
Q 001072 1089 VDFFHCMTCNCCLAKKL---VDHKCREKGLETNCPI 1121 (1164)
Q Consensus 1089 ~~~fHC~~C~~C~~~~~---~~H~C~e~~~~~~Cpi 1121 (1164)
.++|+|.. |.|++... ...-|...+-+.+|||
T Consensus 5 ~~~f~C~~-g~CI~~~~~CDg~~DC~DgsDE~~Cpv 39 (39)
T d2fcwb1 5 QAEFRCHD-GKCISRQFVCDSDRDCLDGSDEASCPV 39 (39)
T ss_dssp TTEEECTT-SCEEEGGGTTSSSCCSTTCTTTTTHHH
T ss_pred CCCEEcCC-CCEEcchhcCcCcCcCcCCchhcCCCC
Confidence 36899987 89999987 6889999999999997
No 23
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=65.59 E-value=1 Score=39.88 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=28.7
Q ss_pred CCCCcccccccccccCcccccCCC-ccccHhhHhh-------hhhhhhhh
Q 001072 1116 ETNCPICCDFLFTSSATVRALPCG-HFMHSDCFQV-------CSVLCFAF 1157 (1164)
Q Consensus 1116 ~~~CpiC~e~lfts~~~~~~l~CG-H~~H~~C~~~-------~~~~~~~~ 1157 (1164)
+--||||++-|-+ || ++||| |+.=..|... ||+|++.+
T Consensus 22 ~f~CPI~~~lm~d---PV-~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l 67 (98)
T d1wgma_ 22 EFLDPIMSTLMCD---PV-VLPSSRVTVDRSTIARHLLSDQTDPFNRSPL 67 (98)
T ss_dssp TTBCTTTCSBCSS---EE-ECTTTCCEEEHHHHHHHTTTSCBCTTTCSBC
T ss_pred HhCCcCchhHHHH---HH-hcccccchhhHHHHHHHHHhcCCcccccccc
Confidence 5679999988876 45 46665 6788888876 88887754
No 24
>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}
Probab=57.57 E-value=2.4 Score=35.73 Aligned_cols=16 Identities=25% Similarity=0.887 Sum_probs=12.1
Q ss_pred cccceEecccccc-ccC
Q 001072 1053 LSMAKYYCGICKF-FDD 1068 (1164)
Q Consensus 1053 ~~~a~y~C~~C~l-~d~ 1068 (1164)
+..++|-|.+|.+ ||.
T Consensus 3 ~~~~ky~C~~CgyiYDp 19 (70)
T d1dx8a_ 3 IDEGKYECEACGYIYEP 19 (70)
T ss_dssp CCSSCEEETTTCCEECT
T ss_pred ccCCeEEcCCCCeEECc
Confidence 4678999999975 443
No 25
>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]}
Probab=55.79 E-value=2.6 Score=33.55 Aligned_cols=25 Identities=32% Similarity=0.991 Sum_probs=16.8
Q ss_pred cceEecccccc-ccCC-----------------CCcccCCCCC
Q 001072 1055 MAKYYCGICKF-FDDE-----------------RVVYHCPFCN 1079 (1164)
Q Consensus 1055 ~a~y~C~~C~l-~d~~-----------------k~~yHC~~Cg 1079 (1164)
|.+|-|.+|.+ ||.. .+-|+||.||
T Consensus 1 M~~y~C~~CgyiYdp~~Gd~~~gi~pGT~F~~LP~~w~CP~C~ 43 (52)
T d2dsxa1 1 MDIYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCG 43 (52)
T ss_dssp CCCEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTC
T ss_pred CCeEEeCCCCeEECcccCCcccCCCCCCCHHHCCCCCCCcCCC
Confidence 56788888875 4433 3567777776
No 26
>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}
Probab=54.21 E-value=2.8 Score=33.43 Aligned_cols=14 Identities=36% Similarity=1.156 Sum_probs=10.3
Q ss_pred cceEecccccc-ccC
Q 001072 1055 MAKYYCGICKF-FDD 1068 (1164)
Q Consensus 1055 ~a~y~C~~C~l-~d~ 1068 (1164)
|.+|-|.+|.+ ||.
T Consensus 1 M~ky~C~~CgyiYd~ 15 (53)
T d1iroa_ 1 MKKYTCTVCGYIYNP 15 (53)
T ss_dssp CCCEEETTTCCEECT
T ss_pred CCCeEcCCCCcEECc
Confidence 67899999975 443
No 27
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=54.21 E-value=2.3 Score=37.10 Aligned_cols=35 Identities=23% Similarity=0.616 Sum_probs=25.9
Q ss_pred CCcccCCCCC-----cccccCCCCcceeeccccccccccc
Q 001072 1070 RVVYHCPFCN-----LCRVGRGLGVDFFHCMTCNCCLAKK 1104 (1164)
Q Consensus 1070 k~~yHC~~Cg-----iCR~g~gl~~~~fHC~~C~~C~~~~ 1104 (1164)
..+|.|++|| .|++-+..|+-..+|..||.=+...
T Consensus 21 ~t~F~CPfCnh~~sV~vk~dkk~~~g~l~C~vCg~~~~~~ 60 (85)
T d1wiia_ 21 ETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60 (85)
T ss_dssp SSCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEE
T ss_pred CceEcCCCCCCCCeEEEEEEecCCEEEEEEecCCCeEEec
Confidence 3569999999 5777766677788888888655443
No 28
>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}
Probab=48.44 E-value=3.7 Score=31.68 Aligned_cols=25 Identities=36% Similarity=1.076 Sum_probs=17.7
Q ss_pred cceEecccccc-ccCC----------CCcccCCCCC
Q 001072 1055 MAKYYCGICKF-FDDE----------RVVYHCPFCN 1079 (1164)
Q Consensus 1055 ~a~y~C~~C~l-~d~~----------k~~yHC~~Cg 1079 (1164)
|.+|-|.+|.+ ||.+ .+-|+||-||
T Consensus 1 M~~y~C~~CgyiYd~~~Gdgt~Fe~LP~dw~CP~C~ 36 (45)
T d6rxna_ 1 MQKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCG 36 (45)
T ss_dssp CCCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTC
T ss_pred CCCeEeCCCCeEECcccCCCCCHHHCCCCCCCcCCC
Confidence 67899999975 4431 4667777776
No 29
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.78 E-value=9.8 Score=30.33 Aligned_cols=27 Identities=30% Similarity=0.827 Sum_probs=19.0
Q ss_pred cCCCCCcccccCCCCcceeeccccccccccc
Q 001072 1074 HCPFCNLCRVGRGLGVDFFHCMTCNCCLAKK 1104 (1164)
Q Consensus 1074 HC~~CgiCR~g~gl~~~~fHC~~C~~C~~~~ 1104 (1164)
|.+.|.+|+.++ +..-|++|+..+-+.
T Consensus 8 ~~~~C~~C~~~g----~lv~Cd~C~~~~H~~ 34 (61)
T d1mm2a_ 8 HMEFCRVCKDGG----ELLCCDTCPSSYHIH 34 (61)
T ss_dssp SCSSCTTTCCCS----SCBCCSSSCCCBCSS
T ss_pred CcCCCcCCCCCC----eEEEeCCCCccCchh
Confidence 556788887653 678888888766543
No 30
>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=38.02 E-value=6.7 Score=31.17 Aligned_cols=24 Identities=38% Similarity=1.125 Sum_probs=16.7
Q ss_pred ceEecccccc-ccCC-----------------CCcccCCCCC
Q 001072 1056 AKYYCGICKF-FDDE-----------------RVVYHCPFCN 1079 (1164)
Q Consensus 1056 a~y~C~~C~l-~d~~-----------------k~~yHC~~Cg 1079 (1164)
|+|-|.+|.+ ||.+ ..-|.||.||
T Consensus 1 aky~C~~CgyiYd~~~Gd~~~gi~pGT~f~dLP~dw~CP~C~ 42 (53)
T d1brfa_ 1 AKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICG 42 (53)
T ss_dssp CEEEETTTCCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTC
T ss_pred CceECCCCCcEECcccCCcccCCCCCCCHHHCCCCCCCcCCC
Confidence 6788888875 4432 4667888776
No 31
>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=36.77 E-value=4.1 Score=34.45 Aligned_cols=25 Identities=24% Similarity=0.632 Sum_probs=10.9
Q ss_pred ceEeccccccccCC---CCcccCCCCCc
Q 001072 1056 AKYYCGICKFFDDE---RVVYHCPFCNL 1080 (1164)
Q Consensus 1056 a~y~C~~C~l~d~~---k~~yHC~~Cgi 1080 (1164)
++|.|+.|.-..-. -.|++|.+||.
T Consensus 26 ~ky~Cp~Cgk~~vkR~a~GIW~C~kC~~ 53 (73)
T d1jj2y_ 26 KKHKCPVCGFKKLKRAGTGIWMCGHCGY 53 (73)
T ss_dssp SCBCCSSSCCSCEEEEETTEEEETTTCC
T ss_pred CCccCCCCCCCceEEEEEEEEECCCCCC
Confidence 44555555422111 34555555543
No 32
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=36.26 E-value=5.4 Score=32.05 Aligned_cols=35 Identities=17% Similarity=0.436 Sum_probs=24.9
Q ss_pred CcCCCCcccccccccccCcccccCCCccccHhhHh
Q 001072 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQ 1148 (1164)
Q Consensus 1114 ~~~~~CpiC~e~lfts~~~~~~l~CGH~~H~~C~~ 1148 (1164)
+...+|+||.+.--+...-|.--.|+...|..|..
T Consensus 4 ~~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~ 38 (64)
T d1we9a_ 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVK 38 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTT
T ss_pred CCCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCC
Confidence 45679999987543333334456899999999986
No 33
>d2mhra_ a.24.4.1 (A:) Myohemerythin {Sipunculan worm (Themiste zostericola) [TaxId: 6437]}
Probab=32.82 E-value=18 Score=32.31 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 001072 402 QADLIMASIQKHFRNEEVQV 421 (1164)
Q Consensus 402 ~le~L~~~L~~Hf~kEE~qv 421 (1164)
.+..|..-...||..||...
T Consensus 43 ~l~~L~~y~~~HF~~EE~lM 62 (118)
T d2mhra_ 43 NLATLVKVTTNHFTHEEAMM 62 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45567778899999999654
No 34
>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=30.33 E-value=6.1 Score=33.38 Aligned_cols=9 Identities=22% Similarity=1.006 Sum_probs=4.6
Q ss_pred eeecccccc
Q 001072 1091 FFHCMTCNC 1099 (1164)
Q Consensus 1091 ~fHC~~C~~ 1099 (1164)
..+|.+||.
T Consensus 45 IW~C~kC~~ 53 (73)
T d1vqoz1 45 IWQCSYCDY 53 (73)
T ss_dssp EEEETTTCC
T ss_pred EEECCCCCC
Confidence 455555543
No 35
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=26.58 E-value=7.4 Score=35.47 Aligned_cols=42 Identities=21% Similarity=0.345 Sum_probs=30.6
Q ss_pred cCCCCccccccccc-ccCcccccCCCccccHhhHh-----------hhhhhhhh
Q 001072 1115 LETNCPICCDFLFT-SSATVRALPCGHFMHSDCFQ-----------VCSVLCFA 1156 (1164)
Q Consensus 1115 ~~~~CpiC~e~lft-s~~~~~~l~CGH~~H~~C~~-----------~~~~~~~~ 1156 (1164)
...+|++|...++. +....+--.||+.++..|.. .|.+|.+.
T Consensus 47 ~~~~C~~C~~~f~~~~~~~~~C~~C~~~~C~~C~~~~~~~~~~~~w~C~~C~k~ 100 (124)
T d1zbdb_ 47 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 100 (124)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCcCcccCCcccCCCCCCCcCccCCcccccCCCCCccCCCCCCCEECccCcch
Confidence 35689999988654 34456678999999999953 27777654
No 36
>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]}
Probab=25.27 E-value=13 Score=29.71 Aligned_cols=11 Identities=27% Similarity=0.664 Sum_probs=7.3
Q ss_pred cceEecccccc
Q 001072 1055 MAKYYCGICKF 1065 (1164)
Q Consensus 1055 ~a~y~C~~C~l 1065 (1164)
+-+|.|.+|.+
T Consensus 2 ~kky~C~~Cgy 12 (56)
T d1s24a_ 2 YLKWICITCGH 12 (56)
T ss_dssp CCEEEETTTTE
T ss_pred CccEECCCCCc
Confidence 34677777864
No 37
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.06 E-value=11 Score=25.53 Aligned_cols=11 Identities=36% Similarity=1.056 Sum_probs=5.1
Q ss_pred eeccccccccc
Q 001072 1092 FHCMTCNCCLA 1102 (1164)
Q Consensus 1092 fHC~~C~~C~~ 1102 (1164)
|.|.+||-||-
T Consensus 2 f~c~kcgkcyf 12 (28)
T d2dlqa2 2 FECPKCGKCYF 12 (28)
T ss_dssp CBCTTTCCBCS
T ss_pred Cccccchhhhh
Confidence 34444444444
No 38
>d2hmza_ a.24.4.1 (A:) Hemerythrin {Sipunculid worm (Themiste dyscritum) [TaxId: 6436]}
Probab=25.05 E-value=34 Score=30.26 Aligned_cols=40 Identities=13% Similarity=0.083 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhCCHHHHHHHHHHHhh
Q 001072 402 QADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSLC 443 (1164)
Q Consensus 402 ~le~L~~~L~~Hf~kEE~qvfPLl~~~fS~eEq~eL~~~~l~ 443 (1164)
.+..|.+-...||..||+-.-.. .+-..++..+...+++.
T Consensus 43 ~l~~L~~y~~~HF~~EE~lM~~~--~yp~~~~H~~~H~~fl~ 82 (113)
T d2hmza_ 43 HLNELRRCTGKHFLNEQQLMQAS--QYAGYAEHKKAHDDFIH 82 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--TCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 35667777899999999754321 22234444555555554
No 39
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=24.46 E-value=21 Score=27.72 Aligned_cols=10 Identities=30% Similarity=0.959 Sum_probs=7.7
Q ss_pred CCCccccccc
Q 001072 1117 TNCPICCDFL 1126 (1164)
Q Consensus 1117 ~~CpiC~e~l 1126 (1164)
..||+|...+
T Consensus 44 ~~CP~CR~~i 53 (55)
T d1iyma_ 44 STCPLCRLTV 53 (55)
T ss_dssp CSCSSSCCCS
T ss_pred CcCCCCCCEe
Confidence 5799998654
No 40
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=22.80 E-value=16 Score=29.10 Aligned_cols=53 Identities=23% Similarity=0.484 Sum_probs=28.1
Q ss_pred cceEeccccccccCC-CCcccCCCCCcccccCCCCcceeecccccccccccccccccccCCcCCCCccccc
Q 001072 1055 MAKYYCGICKFFDDE-RVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCD 1124 (1164)
Q Consensus 1055 ~a~y~C~~C~l~d~~-k~~yHC~~CgiCR~g~gl~~~~fHC~~C~~C~~~~~~~H~C~e~~~~~~CpiC~e 1124 (1164)
-+.+.|.+|+--+++ ...-.|+.|+ ..||- .|+.+.... ++...+-.||.|..
T Consensus 4 ~~~~~C~~C~~~~~~~~~~I~Cd~C~----------~w~H~----~C~~~~~~~---~~~~~~w~C~~C~~ 57 (64)
T d1we9a_ 4 GSSGQCGACGESYAADEFWICCDLCE----------MWFHG----KCVKITPAR---AEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSC----------CEEET----TTTTCCTTG---GGGCSSCCCHHHHT
T ss_pred CCCCcCcCcCCCCCCCCCEEEcCCCC----------ccCCc----ccCCcChHH---CCCCCeEECcCCcC
Confidence 345677788654444 4444777775 35663 344443211 11223567888864
No 41
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.06 E-value=18 Score=30.15 Aligned_cols=55 Identities=22% Similarity=0.611 Sum_probs=30.4
Q ss_pred cccceEeccccccc-cCCCCcccCCCCCcccccCCCCcceeecccccccccccccccccccCCcCCCCcccccc
Q 001072 1053 LSMAKYYCGICKFF-DDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDF 1125 (1164)
Q Consensus 1053 ~~~a~y~C~~C~l~-d~~k~~yHC~~CgiCR~g~gl~~~~fHC~~C~~C~~~~~~~H~C~e~~~~~~CpiC~e~ 1125 (1164)
......|| ||+.- |+++.-..|+.|+ ..||. .|+.+.... +....+-.||.|...
T Consensus 8 ~~~~pv~C-iC~~~~~~~~~mI~Cd~C~----------~W~H~----~C~g~~~~~---~~~~~~~~C~~C~~~ 63 (79)
T d1wepa_ 8 MALVPVYC-LCRQPYNVNHFMIECGLCQ----------DWFHG----SCVGIEEEN---AVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCCCCS-TTSCSCCSSSCEEEBTTTC----------CEEEH----HHHTCCHHH---HTTCSBBCCTTTTTT
T ss_pred CCcCCeEe-ECCCccCCCCcEEECCCCC----------CcEec----cccCcchhc---CCCCCEEECccCcCC
Confidence 33445677 78754 3345556788774 56775 455544211 111224778888653
No 42
>d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus asaccharolyticus [TaxId: 1258]}
Probab=20.86 E-value=11 Score=29.32 Aligned_cols=16 Identities=25% Similarity=0.771 Sum_probs=11.7
Q ss_pred Ccceeecccccccccc
Q 001072 1088 GVDFFHCMTCNCCLAK 1103 (1164)
Q Consensus 1088 ~~~~fHC~~C~~C~~~ 1103 (1164)
..+...|..||.|+..
T Consensus 30 ~i~~~~C~~Cg~C~~~ 45 (55)
T d1dura_ 30 AIDADSCIDCGSCASV 45 (55)
T ss_dssp EECTTTCCCCCHHHHH
T ss_pred EEChhHCcCCCChhhh
Confidence 3567788888888653
No 43
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.34 E-value=20 Score=37.18 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhhhccc
Q 001072 683 GRFRLLWGLYRAHSNAEDD 701 (1164)
Q Consensus 683 ~rf~~L~~v~~~HS~AEDe 701 (1164)
+-++|++.+..+...+-|+
T Consensus 29 ~yL~f~a~l~~aQ~~~~~~ 47 (290)
T d2fiya1 29 DYLRLVAGLCRLQQALLDN 47 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4555666666666655444
Done!