Query 001073
Match_columns 1163
No_of_seqs 291 out of 2453
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 15:05:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001073.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001073hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0933 Structural maintenance 100.0 1E-140 3E-145 1185.3 128.7 1157 1-1158 1-1171(1174)
2 COG1196 Smc Chromosome segrega 100.0 4E-123 1E-127 1190.0 133.8 1126 1-1160 1-1158(1163)
3 KOG0964 Structural maintenance 100.0 1E-113 3E-118 961.3 114.7 1120 1-1159 1-1187(1200)
4 KOG0996 Structural maintenance 100.0 7E-107 2E-111 929.0 116.7 1126 1-1157 84-1283(1293)
5 KOG0018 Structural maintenance 100.0 2E-100 4E-105 871.8 103.4 1088 1-1159 2-1140(1141)
6 TIGR02169 SMC_prok_A chromosom 100.0 9.9E-99 2E-103 1001.6 137.4 1122 2-1157 1-1163(1164)
7 TIGR02168 SMC_prok_B chromosom 100.0 6.9E-83 1.5E-87 853.5 134.8 1125 2-1156 1-1177(1179)
8 KOG0250 DNA repair protein RAD 100.0 1.8E-72 3.9E-77 650.3 101.0 578 2-646 41-637 (1074)
9 KOG0979 Structural maintenance 100.0 3.1E-72 6.7E-77 637.4 93.4 971 3-1132 22-1027(1072)
10 PRK02224 chromosome segregatio 100.0 4.2E-47 9E-52 484.7 104.8 157 1-177 1-167 (880)
11 PRK03918 chromosome segregatio 100.0 4.9E-46 1.1E-50 476.7 112.4 176 1-195 1-181 (880)
12 PRK01156 chromosome segregatio 100.0 3.4E-42 7.4E-47 438.5 110.5 172 1-193 1-183 (895)
13 TIGR00606 rad50 rad50. This fa 100.0 6.2E-42 1.3E-46 446.2 112.9 203 949-1158 1072-1303(1311)
14 COG0419 SbcC ATPase involved i 100.0 4.2E-39 9.2E-44 406.2 107.9 181 1-197 1-192 (908)
15 PRK04863 mukB cell division pr 100.0 9.8E-32 2.1E-36 340.3 110.7 63 160-226 280-342 (1486)
16 PRK10246 exonuclease subunit S 100.0 1.1E-31 2.4E-36 340.6 109.9 180 1-196 1-204 (1047)
17 TIGR00618 sbcc exonuclease Sbc 100.0 2.3E-31 5.1E-36 341.2 109.0 181 1-197 1-201 (1042)
18 TIGR02680 conserved hypothetic 100.0 4E-25 8.7E-30 285.8 116.8 83 2-86 3-95 (1353)
19 TIGR02169 SMC_prok_A chromosom 100.0 3.7E-27 8.1E-32 314.7 82.6 517 182-765 169-711 (1164)
20 COG1196 Smc Chromosome segrega 100.0 5.6E-27 1.2E-31 302.5 80.9 651 182-909 171-851 (1163)
21 PF02463 SMC_N: RecF/RecN/SMC 100.0 7E-32 1.5E-36 285.6 22.0 134 2-139 1-135 (220)
22 KOG0962 DNA repair protein RAD 100.0 1.9E-22 4E-27 241.8 92.3 160 2-176 3-185 (1294)
23 TIGR02168 SMC_prok_B chromosom 100.0 4.2E-23 9.2E-28 276.9 90.7 197 248-452 229-426 (1179)
24 PHA02562 46 endonuclease subun 100.0 9E-25 2E-29 266.1 44.0 178 1-197 2-188 (562)
25 KOG0996 Structural maintenance 99.9 1.1E-20 2.4E-25 220.1 70.0 427 302-803 385-849 (1293)
26 cd03273 ABC_SMC2_euk Eukaryoti 99.9 4.8E-26 1E-30 244.9 17.3 157 1-157 1-157 (251)
27 PRK10869 recombination and rep 99.9 3.5E-23 7.7E-28 243.6 37.2 173 2-197 1-178 (553)
28 TIGR00634 recN DNA repair prot 99.9 6.3E-23 1.4E-27 245.1 38.8 171 2-195 1-180 (563)
29 PF13514 AAA_27: AAA domain 99.9 1.6E-17 3.5E-22 214.9 86.3 120 1021-1143 980-1103(1111)
30 KOG0964 Structural maintenance 99.9 1.2E-17 2.6E-22 190.6 70.9 107 597-719 538-660 (1200)
31 cd03275 ABC_SMC1_euk Eukaryoti 99.9 2E-21 4.3E-26 208.2 18.1 155 3-170 1-158 (247)
32 KOG0933 Structural maintenance 99.9 1.1E-15 2.4E-20 175.8 63.6 147 596-754 535-703 (1174)
33 PHA02562 46 endonuclease subun 99.8 4.1E-18 8.8E-23 207.8 41.6 103 1052-1155 451-560 (562)
34 COG0497 RecN ATPase involved i 99.8 1.8E-17 4E-22 186.3 37.0 172 2-196 1-177 (557)
35 PF12128 DUF3584: Protein of u 99.8 6.4E-10 1.4E-14 144.9 109.4 60 1071-1133 1122-1186(1201)
36 cd03272 ABC_SMC3_euk Eukaryoti 99.8 1.2E-19 2.6E-24 195.4 16.4 150 3-158 1-150 (243)
37 cd03241 ABC_RecN RecN ATPase i 99.8 8.3E-20 1.8E-24 198.7 13.7 142 3-167 1-147 (276)
38 KOG0018 Structural maintenance 99.8 9.7E-15 2.1E-19 170.1 55.5 140 596-749 518-673 (1141)
39 COG4717 Uncharacterized conser 99.8 5.9E-11 1.3E-15 136.0 84.0 103 1027-1135 864-970 (984)
40 cd03242 ABC_RecF RecF is a rec 99.8 4.9E-19 1.1E-23 192.0 16.4 139 3-171 1-140 (270)
41 PRK00064 recF recombination pr 99.8 1.7E-18 3.7E-23 194.7 17.5 140 1-170 1-141 (361)
42 TIGR03185 DNA_S_dndD DNA sulfu 99.8 1.6E-14 3.5E-19 176.4 53.1 167 1-177 1-187 (650)
43 PRK14079 recF recombination pr 99.8 2.7E-18 5.8E-23 191.9 17.8 138 1-170 1-138 (349)
44 TIGR00634 recN DNA repair prot 99.7 3.6E-15 7.8E-20 178.6 35.7 108 1052-1159 421-534 (563)
45 KOG0250 DNA repair protein RAD 99.7 6.8E-11 1.5E-15 140.2 69.5 186 946-1139 865-1062(1074)
46 COG4913 Uncharacterized protei 99.7 2E-09 4.4E-14 120.3 85.6 149 2-167 16-206 (1104)
47 cd03277 ABC_SMC5_euk Eukaryoti 99.7 9.6E-18 2.1E-22 173.8 10.3 110 2-163 2-111 (213)
48 PRK10869 recombination and rep 99.7 1.7E-14 3.6E-19 170.5 38.8 108 1051-1158 410-523 (553)
49 PRK04863 mukB cell division pr 99.7 8.3E-09 1.8E-13 133.1 88.7 50 2-53 6-55 (1486)
50 TIGR03185 DNA_S_dndD DNA sulfu 99.6 7E-12 1.5E-16 153.4 48.9 111 1017-1135 502-617 (650)
51 KOG0161 Myosin class II heavy 99.6 2.4E-07 5.1E-12 119.8 93.4 14 146-159 805-818 (1930)
52 TIGR00611 recf recF protein. A 99.6 5.7E-15 1.2E-19 165.6 16.5 141 1-170 1-142 (365)
53 cd03273 ABC_SMC2_euk Eukaryoti 99.6 1.6E-15 3.5E-20 163.4 10.5 91 1063-1153 160-250 (251)
54 cd03239 ABC_SMC_head The struc 99.6 1.1E-15 2.5E-20 153.4 7.7 82 3-86 1-82 (178)
55 COG1195 RecF Recombinational D 99.6 4E-14 8.7E-19 152.5 19.9 141 1-171 1-142 (363)
56 COG1126 GlnQ ABC-type polar am 99.5 1.3E-14 2.8E-19 141.1 7.7 93 1053-1151 120-214 (240)
57 cd03278 ABC_SMC_barmotin Barmo 99.5 2.7E-14 5.9E-19 146.4 9.8 93 1060-1152 104-197 (197)
58 COG1136 SalX ABC-type antimicr 99.5 4E-14 8.7E-19 143.2 9.0 88 1057-1150 129-219 (226)
59 KOG0161 Myosin class II heavy 99.5 2.2E-06 4.7E-11 111.2 89.4 19 992-1010 1608-1626(1930)
60 cd03276 ABC_SMC6_euk Eukaryoti 99.5 8E-14 1.7E-18 143.1 8.1 79 3-87 1-79 (198)
61 cd03275 ABC_SMC1_euk Eukaryoti 99.5 1.6E-13 3.5E-18 147.1 10.1 98 1059-1156 145-245 (247)
62 cd03274 ABC_SMC4_euk Eukaryoti 99.5 2.1E-13 4.5E-18 141.5 10.1 66 1-67 1-66 (212)
63 COG1124 DppF ABC-type dipeptid 99.4 9.9E-14 2.2E-18 138.3 6.9 88 1056-1149 127-218 (252)
64 cd03274 ABC_SMC4_euk Eukaryoti 99.4 4.2E-13 9E-18 139.3 9.7 97 1057-1153 115-211 (212)
65 cd03272 ABC_SMC3_euk Eukaryoti 99.4 6.9E-13 1.5E-17 142.9 10.9 90 1064-1153 153-242 (243)
66 COG1127 Ttg2A ABC-type transpo 99.4 3.5E-13 7.7E-18 133.5 6.6 85 1057-1145 132-220 (263)
67 COG0497 RecN ATPase involved i 99.4 4.6E-09 1E-13 119.3 39.6 106 1052-1157 412-523 (557)
68 cd03239 ABC_SMC_head The struc 99.4 1.4E-12 2.9E-17 131.2 9.8 83 1070-1152 95-178 (178)
69 PF13555 AAA_29: P-loop contai 99.4 4.9E-13 1.1E-17 104.5 4.7 49 3-53 1-51 (62)
70 COG1122 CbiO ABC-type cobalt t 99.4 4.9E-13 1.1E-17 138.8 5.9 89 1055-1149 124-215 (235)
71 PF06470 SMC_hinge: SMC protei 99.4 1.4E-12 3E-17 123.3 8.4 116 505-625 2-120 (120)
72 cd03279 ABC_sbcCD SbcCD and ot 99.4 6.5E-13 1.4E-17 139.1 6.7 81 1-86 1-85 (213)
73 COG1121 ZnuC ABC-type Mn/Zn tr 99.4 1.3E-12 2.8E-17 134.3 8.0 86 1055-1144 125-212 (254)
74 cd03240 ABC_Rad50 The catalyti 99.4 2.5E-12 5.4E-17 133.0 10.0 90 3-107 1-91 (204)
75 cd03278 ABC_SMC_barmotin Barmo 99.3 2.6E-12 5.6E-17 131.9 8.3 84 3-87 1-86 (197)
76 COG1117 PstB ABC-type phosphat 99.3 2.3E-12 5E-17 124.8 6.6 73 1064-1140 144-217 (253)
77 COG1135 AbcC ABC-type metal io 99.3 1.8E-12 3.8E-17 133.4 6.0 85 1054-1142 126-213 (339)
78 COG1116 TauB ABC-type nitrate/ 99.3 3.9E-12 8.4E-17 128.6 8.2 90 1056-1149 117-209 (248)
79 COG1120 FepC ABC-type cobalami 99.3 3.7E-12 8.1E-17 131.8 7.9 81 1059-1143 128-211 (258)
80 COG4181 Predicted ABC-type tra 99.3 6E-12 1.3E-16 116.9 7.5 89 1052-1144 129-219 (228)
81 COG3840 ThiQ ABC-type thiamine 99.3 5.1E-12 1.1E-16 118.8 6.8 89 1052-1144 112-203 (231)
82 cd03241 ABC_RecN RecN ATPase i 99.3 1.3E-11 2.8E-16 134.6 10.5 95 1064-1158 165-260 (276)
83 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.3 6.7E-12 1.5E-16 132.7 7.4 76 1064-1143 135-212 (218)
84 TIGR00606 rad50 rad50. This fa 99.3 7.2E-05 1.6E-09 99.6 91.3 176 2-192 2-202 (1311)
85 cd03235 ABC_Metallic_Cations A 99.2 1.2E-11 2.6E-16 130.2 8.4 78 1063-1144 126-205 (213)
86 COG1125 OpuBA ABC-type proline 99.2 7E-12 1.5E-16 124.8 6.0 78 1061-1142 127-207 (309)
87 TIGR00960 3a0501s02 Type II (G 99.2 1.3E-11 2.9E-16 130.1 8.5 76 1064-1143 133-210 (216)
88 COG2884 FtsE Predicted ATPase 99.2 1.2E-11 2.7E-16 117.6 7.2 80 1056-1139 124-204 (223)
89 TIGR02211 LolD_lipo_ex lipopro 99.2 1.3E-11 2.8E-16 130.9 8.4 80 1064-1149 136-217 (221)
90 cd03214 ABC_Iron-Siderophores_ 99.2 1.5E-11 3.2E-16 125.3 8.4 80 1064-1149 92-174 (180)
91 cd03259 ABC_Carb_Solutes_like 99.2 1.2E-11 2.6E-16 130.2 7.9 80 1064-1149 125-207 (213)
92 cd03226 ABC_cobalt_CbiO_domain 99.2 1.9E-11 4.1E-16 127.7 9.1 80 1064-1149 121-202 (205)
93 cd03225 ABC_cobalt_CbiO_domain 99.2 1.5E-11 3.2E-16 129.3 8.3 76 1064-1143 129-206 (211)
94 cd03237 ABC_RNaseL_inhibitor_d 99.2 1.6E-11 3.4E-16 131.0 8.5 84 1064-1151 110-196 (246)
95 TIGR02314 ABC_MetN D-methionin 99.2 1.3E-11 2.8E-16 137.2 7.9 84 1060-1149 131-217 (343)
96 cd03238 ABC_UvrA The excision 99.2 2.4E-11 5.1E-16 121.2 8.8 82 1064-1149 82-166 (176)
97 cd03223 ABCD_peroxisomal_ALDP 99.2 3.3E-11 7.1E-16 120.5 9.3 73 1066-1144 88-160 (166)
98 COG4988 CydD ABC-type transpor 99.2 1.9E-11 4.2E-16 137.6 8.4 74 1066-1143 453-526 (559)
99 cd03264 ABC_drug_resistance_li 99.2 2.1E-11 4.6E-16 128.0 8.2 80 1064-1149 125-205 (211)
100 cd03293 ABC_NrtD_SsuB_transpor 99.2 2.1E-11 4.4E-16 129.0 8.1 76 1064-1143 126-204 (220)
101 TIGR02673 FtsE cell division A 99.2 2.2E-11 4.7E-16 128.4 8.1 77 1064-1144 132-210 (214)
102 cd03248 ABCC_TAP TAP, the Tran 99.2 3.5E-11 7.6E-16 127.9 9.3 77 1064-1144 145-221 (226)
103 cd03261 ABC_Org_Solvent_Resist 99.2 2.5E-11 5.5E-16 129.8 8.2 81 1064-1150 131-214 (235)
104 cd03245 ABCC_bacteriocin_expor 99.2 3.5E-11 7.7E-16 127.4 9.2 78 1066-1149 137-214 (220)
105 PRK11629 lolD lipoprotein tran 99.2 3.7E-11 8.1E-16 128.2 9.3 81 1064-1150 140-222 (233)
106 TIGR03864 PQQ_ABC_ATP ABC tran 99.2 3.1E-11 6.8E-16 129.1 8.6 80 1064-1149 127-208 (236)
107 COG0444 DppD ABC-type dipeptid 99.2 2.1E-11 4.5E-16 128.0 7.0 75 1064-1142 148-225 (316)
108 cd03268 ABC_BcrA_bacitracin_re 99.2 2.4E-11 5.2E-16 127.3 7.5 80 1064-1149 121-202 (208)
109 KOG4674 Uncharacterized conser 99.2 8.7E-05 1.9E-09 94.9 84.9 46 242-287 842-887 (1822)
110 COG2274 SunT ABC-type bacterio 99.2 2.3E-11 5.1E-16 146.1 8.2 74 1066-1143 606-679 (709)
111 TIGR03608 L_ocin_972_ABC putat 99.2 3.3E-11 7.1E-16 126.3 8.2 75 1064-1142 129-204 (206)
112 COG3638 ABC-type phosphate/pho 99.2 2.2E-11 4.7E-16 120.6 6.2 87 1056-1146 134-223 (258)
113 PRK10584 putative ABC transpor 99.2 3.4E-11 7.4E-16 128.2 8.3 80 1064-1149 141-222 (228)
114 cd03292 ABC_FtsE_transporter F 99.2 3.6E-11 7.7E-16 126.8 8.2 76 1065-1144 132-209 (214)
115 cd03256 ABC_PhnC_transporter A 99.2 3.4E-11 7.5E-16 129.6 8.2 81 1064-1150 139-222 (241)
116 cd03252 ABCC_Hemolysin The ABC 99.2 4.9E-11 1.1E-15 127.8 9.3 80 1064-1149 133-212 (237)
117 TIGR01184 ntrCD nitrate transp 99.2 3.5E-11 7.6E-16 127.8 8.1 77 1064-1144 109-188 (230)
118 cd03219 ABC_Mj1267_LivG_branch 99.2 4.1E-11 8.8E-16 128.5 8.6 80 1064-1149 138-219 (236)
119 cd03263 ABC_subfamily_A The AB 99.2 3.8E-11 8.3E-16 127.1 8.2 80 1064-1149 128-208 (220)
120 cd03246 ABCC_Protease_Secretio 99.2 4.3E-11 9.2E-16 121.0 8.1 70 1070-1143 97-167 (173)
121 PF13476 AAA_23: AAA domain; P 99.2 6.1E-12 1.3E-16 131.9 2.1 47 5-53 1-47 (202)
122 KOG0055 Multidrug/pheromone ex 99.2 3.5E-11 7.7E-16 146.7 8.7 77 1068-1150 488-564 (1228)
123 PRK11248 tauB taurine transpor 99.2 3.9E-11 8.5E-16 129.3 8.2 78 1064-1145 123-203 (255)
124 cd03297 ABC_ModC_molybdenum_tr 99.2 3.6E-11 7.8E-16 126.5 7.5 79 1065-1149 127-208 (214)
125 cd03247 ABCC_cytochrome_bd The 99.2 6.9E-11 1.5E-15 120.1 9.4 78 1067-1150 96-173 (178)
126 cd03257 ABC_NikE_OppD_transpor 99.2 3.7E-11 8E-16 128.2 7.7 80 1064-1149 140-222 (228)
127 TIGR02315 ABC_phnC phosphonate 99.2 4.2E-11 9.1E-16 129.0 8.1 80 1064-1149 140-222 (243)
128 cd03228 ABCC_MRP_Like The MRP 99.2 6.8E-11 1.5E-15 119.2 9.0 71 1070-1144 97-167 (171)
129 cd03269 ABC_putative_ATPase Th 99.2 4.1E-11 8.8E-16 125.8 7.7 80 1064-1149 123-204 (210)
130 cd03298 ABC_ThiQ_thiamine_tran 99.2 4.7E-11 1E-15 125.4 8.1 80 1064-1149 123-205 (211)
131 PRK13651 cobalt transporter AT 99.2 4.6E-11 9.9E-16 131.6 8.1 81 1063-1149 159-241 (305)
132 PRK11247 ssuB aliphatic sulfon 99.2 5E-11 1.1E-15 128.0 8.2 77 1064-1144 128-207 (257)
133 COG4598 HisP ABC-type histidin 99.2 4.5E-11 9.8E-16 111.9 6.6 79 1052-1134 135-214 (256)
134 PRK10247 putative ABC transpor 99.2 6E-11 1.3E-15 125.6 8.6 81 1064-1148 132-214 (225)
135 cd03260 ABC_PstB_phosphate_tra 99.2 6.5E-11 1.4E-15 126.0 8.9 77 1067-1149 139-216 (227)
136 TIGR03411 urea_trans_UrtD urea 99.2 6.4E-11 1.4E-15 127.4 8.8 77 1064-1144 138-215 (242)
137 cd03296 ABC_CysA_sulfate_impor 99.2 5E-11 1.1E-15 127.8 7.9 80 1064-1149 131-213 (239)
138 TIGR00972 3a0107s01c2 phosphat 99.2 5.7E-11 1.2E-15 128.0 8.4 80 1064-1149 139-219 (247)
139 PRK13637 cbiO cobalt transport 99.2 6.3E-11 1.4E-15 130.0 8.7 77 1064-1144 139-218 (287)
140 PRK11153 metN DL-methionine tr 99.2 4.8E-11 1E-15 134.0 8.0 76 1064-1143 135-213 (343)
141 TIGR01186 proV glycine betaine 99.2 6E-11 1.3E-15 132.6 8.6 81 1063-1149 123-206 (363)
142 PRK13650 cbiO cobalt transport 99.2 6E-11 1.3E-15 129.8 8.4 80 1064-1149 135-216 (279)
143 cd03262 ABC_HisP_GlnQ_permease 99.2 6.4E-11 1.4E-15 124.8 8.4 77 1064-1144 130-208 (213)
144 PRK10908 cell division protein 99.2 7.9E-11 1.7E-15 124.8 8.9 77 1064-1144 132-210 (222)
145 cd03266 ABC_NatA_sodium_export 99.2 5.8E-11 1.3E-15 125.6 7.9 80 1064-1149 131-212 (218)
146 cd03270 ABC_UvrA_I The excisio 99.2 1E-10 2.2E-15 123.5 9.6 78 1064-1144 132-211 (226)
147 PRK13647 cbiO cobalt transport 99.2 6.5E-11 1.4E-15 129.1 8.4 78 1063-1144 132-211 (274)
148 cd03229 ABC_Class3 This class 99.2 6.3E-11 1.4E-15 120.4 7.7 70 1070-1143 101-173 (178)
149 cd03218 ABC_YhbG The ABC trans 99.1 6.7E-11 1.4E-15 126.4 8.2 81 1064-1150 128-210 (232)
150 cd03254 ABCC_Glucan_exporter_l 99.1 9.4E-11 2E-15 125.0 9.3 80 1065-1150 135-214 (229)
151 cd03301 ABC_MalK_N The N-termi 99.1 6.4E-11 1.4E-15 124.7 7.9 80 1064-1149 125-207 (213)
152 TIGR01188 drrA daunorubicin re 99.1 6.3E-11 1.4E-15 131.2 8.2 76 1064-1143 119-196 (302)
153 PRK13631 cbiO cobalt transport 99.1 7.6E-11 1.7E-15 130.6 8.8 76 1064-1143 171-248 (320)
154 cd03258 ABC_MetN_methionine_tr 99.1 6.5E-11 1.4E-15 126.5 8.0 81 1064-1150 135-218 (233)
155 cd03294 ABC_Pro_Gly_Bertaine T 99.1 7E-11 1.5E-15 128.6 8.3 80 1064-1149 155-237 (269)
156 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.1 1E-10 2.2E-15 125.5 9.4 80 1065-1150 135-214 (238)
157 TIGR02324 CP_lyasePhnL phospho 99.1 6.9E-11 1.5E-15 125.5 8.0 77 1065-1145 145-223 (224)
158 cd03240 ABC_Rad50 The catalyti 99.1 9.2E-11 2E-15 121.3 8.7 88 1064-1151 110-203 (204)
159 PRK14245 phosphate ABC transpo 99.1 9E-11 2E-15 126.7 9.0 76 1065-1144 142-218 (250)
160 PRK14268 phosphate ABC transpo 99.1 7.5E-11 1.6E-15 127.8 8.4 79 1065-1149 150-229 (258)
161 PRK14242 phosphate transporter 99.1 9.2E-11 2E-15 127.0 9.1 77 1064-1144 144-221 (253)
162 PRK13638 cbiO cobalt transport 99.1 7.4E-11 1.6E-15 128.8 8.4 77 1064-1144 131-209 (271)
163 cd03265 ABC_DrrA DrrA is the A 99.1 7.1E-11 1.5E-15 124.9 8.0 81 1064-1150 126-209 (220)
164 PRK11264 putative amino-acid A 99.1 8.5E-11 1.8E-15 127.1 8.7 80 1064-1149 139-220 (250)
165 PRK14273 phosphate ABC transpo 99.1 8.3E-11 1.8E-15 127.4 8.5 80 1064-1149 145-225 (254)
166 cd03216 ABC_Carb_Monos_I This 99.1 1.2E-10 2.7E-15 116.0 9.0 76 1068-1149 81-158 (163)
167 TIGR01288 nodI ATP-binding ABC 99.1 8.2E-11 1.8E-15 130.4 8.5 76 1064-1143 130-207 (303)
168 cd03230 ABC_DR_subfamily_A Thi 99.1 9E-11 2E-15 118.6 8.1 71 1070-1144 96-168 (173)
169 PRK11174 cysteine/glutathione 99.1 7.2E-11 1.6E-15 144.7 8.9 77 1067-1149 483-559 (588)
170 PRK14247 phosphate ABC transpo 99.1 1E-10 2.3E-15 126.4 9.0 77 1064-1144 141-218 (250)
171 cd03251 ABCC_MsbA MsbA is an e 99.1 1E-10 2.3E-15 125.1 8.9 79 1065-1149 134-212 (234)
172 COG1118 CysA ABC-type sulfate/ 99.1 8E-11 1.7E-15 121.0 7.5 91 1053-1149 121-214 (345)
173 PRK10771 thiQ thiamine transpo 99.1 8.5E-11 1.8E-15 125.3 8.2 78 1063-1144 123-203 (232)
174 cd03244 ABCC_MRP_domain2 Domai 99.1 1.3E-10 2.8E-15 123.1 9.5 79 1065-1149 135-213 (221)
175 TIGR03740 galliderm_ABC gallid 99.1 8.3E-11 1.8E-15 124.7 7.9 77 1064-1144 119-197 (223)
176 TIGR02770 nickel_nikD nickel i 99.1 8.9E-11 1.9E-15 124.9 8.1 77 1064-1144 120-199 (230)
177 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.1 1E-10 2.2E-15 123.5 8.5 80 1064-1149 137-218 (224)
178 PRK11831 putative ABC transpor 99.1 7.8E-11 1.7E-15 128.3 7.8 80 1064-1149 138-220 (269)
179 TIGR03771 anch_rpt_ABC anchore 99.1 9.2E-11 2E-15 123.9 8.1 76 1064-1143 108-185 (223)
180 PRK13540 cytochrome c biogenes 99.1 9.2E-11 2E-15 121.8 7.9 74 1064-1141 122-196 (200)
181 cd03267 ABC_NatA_like Similar 99.1 9.6E-11 2.1E-15 125.0 8.2 77 1064-1144 148-227 (236)
182 PRK13537 nodulation ABC transp 99.1 7.9E-11 1.7E-15 130.1 7.8 80 1060-1143 129-210 (306)
183 PRK13643 cbiO cobalt transport 99.1 1.1E-10 2.3E-15 128.3 8.8 76 1064-1143 139-216 (288)
184 cd03369 ABCC_NFT1 Domain 2 of 99.1 1.5E-10 3.3E-15 121.1 9.4 79 1065-1149 121-199 (207)
185 PRK13536 nodulation factor exp 99.1 8.6E-11 1.9E-15 131.0 7.9 81 1059-1143 162-244 (340)
186 cd03217 ABC_FeS_Assembly ABC-t 99.1 1.3E-10 2.7E-15 120.6 8.6 77 1067-1149 102-181 (200)
187 PRK09544 znuC high-affinity zi 99.1 9.2E-11 2E-15 125.8 7.7 77 1064-1144 115-194 (251)
188 PRK14241 phosphate transporter 99.1 1.2E-10 2.7E-15 126.3 8.8 77 1064-1144 143-220 (258)
189 PRK11614 livF leucine/isoleuci 99.1 8.7E-11 1.9E-15 125.8 7.5 76 1065-1144 133-210 (237)
190 PRK11650 ugpC glycerol-3-phosp 99.1 8.4E-11 1.8E-15 132.0 7.7 80 1060-1143 125-207 (356)
191 PRK13635 cbiO cobalt transport 99.1 1.1E-10 2.5E-15 127.4 8.5 77 1064-1144 135-213 (279)
192 cd03232 ABC_PDR_domain2 The pl 99.1 1.3E-10 2.8E-15 119.6 8.4 72 1069-1144 108-182 (192)
193 PRK14235 phosphate transporter 99.1 1.4E-10 3E-15 126.2 9.1 77 1064-1144 158-235 (267)
194 TIGR01277 thiQ thiamine ABC tr 99.1 1.1E-10 2.4E-15 122.6 8.1 80 1064-1149 123-205 (213)
195 PRK14259 phosphate ABC transpo 99.1 1.2E-10 2.7E-15 126.7 8.6 78 1064-1145 149-227 (269)
196 cd03222 ABC_RNaseL_inhibitor T 99.1 1.6E-10 3.5E-15 115.4 8.7 77 1070-1150 72-151 (177)
197 PRK14269 phosphate ABC transpo 99.1 1.5E-10 3.2E-15 124.6 9.1 76 1065-1144 138-214 (246)
198 PRK11124 artP arginine transpo 99.1 1.2E-10 2.6E-15 125.2 8.4 77 1064-1144 136-214 (242)
199 PRK11000 maltose/maltodextrin 99.1 8.7E-11 1.9E-15 132.9 7.6 76 1064-1143 128-206 (369)
200 TIGR01166 cbiO cobalt transpor 99.1 1E-10 2.2E-15 120.6 7.4 67 1064-1134 122-189 (190)
201 PRK13636 cbiO cobalt transport 99.1 1E-10 2.2E-15 128.2 7.9 80 1064-1149 136-218 (283)
202 PRK09493 glnQ glutamine ABC tr 99.1 1.2E-10 2.6E-15 125.1 8.2 80 1064-1149 131-212 (240)
203 cd03253 ABCC_ATM1_transporter 99.1 1.7E-10 3.6E-15 123.7 9.3 76 1065-1144 133-208 (236)
204 PRK13646 cbiO cobalt transport 99.1 1.1E-10 2.4E-15 128.1 8.1 77 1064-1144 140-219 (286)
205 PRK13644 cbiO cobalt transport 99.1 1.3E-10 2.9E-15 126.6 8.7 77 1064-1144 131-208 (274)
206 PRK13634 cbiO cobalt transport 99.1 1.2E-10 2.5E-15 128.1 8.1 77 1064-1144 140-219 (290)
207 cd03224 ABC_TM1139_LivF_branch 99.1 1.2E-10 2.6E-15 123.6 8.0 81 1064-1150 127-209 (222)
208 PRK11022 dppD dipeptide transp 99.1 1.2E-10 2.7E-15 129.5 8.4 80 1064-1149 148-230 (326)
209 PRK11308 dppF dipeptide transp 99.1 1.3E-10 2.8E-15 129.2 8.5 76 1064-1143 149-227 (327)
210 PRK10744 pstB phosphate transp 99.1 1.4E-10 3E-15 126.0 8.5 80 1064-1149 151-231 (260)
211 PRK15079 oligopeptide ABC tran 99.1 1.2E-10 2.6E-15 129.6 8.2 80 1064-1149 156-238 (331)
212 PRK11701 phnK phosphonate C-P 99.1 1.3E-10 2.8E-15 126.1 8.3 76 1065-1144 147-225 (258)
213 TIGR03522 GldA_ABC_ATP gliding 99.1 1.3E-10 2.7E-15 128.6 8.4 76 1064-1143 128-204 (301)
214 PRK14262 phosphate ABC transpo 99.1 1.5E-10 3.4E-15 125.0 8.9 77 1064-1144 141-218 (250)
215 PRK14239 phosphate transporter 99.1 1.3E-10 2.9E-15 125.7 8.4 81 1064-1150 143-224 (252)
216 cd03295 ABC_OpuCA_Osmoprotecti 99.1 1.2E-10 2.6E-15 125.0 7.9 81 1064-1150 130-213 (242)
217 TIGR03258 PhnT 2-aminoethylpho 99.1 1.1E-10 2.4E-15 131.0 7.9 84 1060-1149 128-215 (362)
218 PRK13538 cytochrome c biogenes 99.1 1.5E-10 3.3E-15 120.6 8.4 73 1064-1140 124-197 (204)
219 COG1131 CcmA ABC-type multidru 99.1 1E-10 2.3E-15 127.6 7.5 75 1064-1142 131-208 (293)
220 COG4987 CydC ABC-type transpor 99.1 1.6E-10 3.5E-15 127.8 8.9 78 1066-1149 471-548 (573)
221 PRK09536 btuD corrinoid ABC tr 99.1 1.6E-10 3.4E-15 130.9 9.1 83 1058-1144 128-212 (402)
222 PRK10575 iron-hydroxamate tran 99.1 1.3E-10 2.9E-15 126.3 8.2 81 1063-1149 141-224 (265)
223 PRK13648 cbiO cobalt transport 99.1 1.4E-10 3E-15 126.5 8.3 77 1064-1144 137-215 (269)
224 PRK13543 cytochrome c biogenes 99.1 1.8E-10 4E-15 120.9 9.0 78 1064-1145 132-211 (214)
225 PRK13633 cobalt transporter AT 99.1 1.2E-10 2.7E-15 127.5 8.0 77 1063-1143 138-216 (280)
226 PRK13639 cbiO cobalt transport 99.1 1.4E-10 3.1E-15 126.6 8.3 76 1064-1143 132-209 (275)
227 PRK10253 iron-enterobactin tra 99.1 1.4E-10 3.1E-15 126.1 8.3 78 1063-1144 137-217 (265)
228 PRK13657 cyclic beta-1,2-gluca 99.1 1.5E-10 3.3E-15 141.6 9.4 78 1067-1150 469-546 (588)
229 PRK10851 sulfate/thiosulfate t 99.1 1.3E-10 2.7E-15 130.4 8.0 81 1059-1143 126-209 (353)
230 PRK13632 cbiO cobalt transport 99.1 1.4E-10 3E-15 126.6 8.1 81 1064-1150 137-219 (271)
231 PRK13642 cbiO cobalt transport 99.1 1.3E-10 2.8E-15 127.1 7.9 76 1064-1143 135-212 (277)
232 PRK13649 cbiO cobalt transport 99.1 1.4E-10 3.1E-15 127.4 8.2 77 1064-1144 140-218 (280)
233 PRK14267 phosphate ABC transpo 99.1 1.7E-10 3.6E-15 125.0 8.7 80 1064-1149 144-224 (253)
234 TIGR03415 ABC_choXWV_ATP choli 99.1 1.6E-10 3.5E-15 129.7 8.7 82 1063-1150 158-242 (382)
235 PRK10619 histidine/lysine/argi 99.1 1.7E-10 3.7E-15 125.1 8.7 76 1065-1144 148-225 (257)
236 PRK09452 potA putrescine/sperm 99.1 1.5E-10 3.3E-15 130.3 8.6 86 1059-1150 134-222 (375)
237 TIGR03410 urea_trans_UrtE urea 99.1 1.3E-10 2.9E-15 123.9 7.7 77 1064-1144 126-205 (230)
238 TIGR03005 ectoine_ehuA ectoine 99.1 1.5E-10 3.2E-15 125.2 8.2 81 1064-1150 141-224 (252)
239 TIGR03873 F420-0_ABC_ATP propo 99.1 1.6E-10 3.5E-15 125.2 8.5 80 1064-1149 132-213 (256)
240 PRK10070 glycine betaine trans 99.1 1.5E-10 3.4E-15 130.9 8.6 81 1063-1149 158-241 (400)
241 PRK14248 phosphate ABC transpo 99.1 1.6E-10 3.6E-15 125.9 8.6 80 1064-1149 159-239 (268)
242 TIGR02203 MsbA_lipidA lipid A 99.1 1.3E-10 2.9E-15 142.2 8.8 73 1068-1144 468-540 (571)
243 TIGR02982 heterocyst_DevA ABC 99.1 1.3E-10 2.8E-15 122.8 7.5 76 1064-1143 136-213 (220)
244 PRK14265 phosphate ABC transpo 99.1 1.7E-10 3.7E-15 125.8 8.7 78 1064-1145 156-234 (274)
245 PRK14255 phosphate ABC transpo 99.1 1.8E-10 3.9E-15 124.7 8.7 76 1064-1143 143-219 (252)
246 TIGR01187 potA spermidine/putr 99.1 1.3E-10 2.9E-15 129.5 8.0 76 1064-1143 95-173 (325)
247 PRK15093 antimicrobial peptide 99.1 1.4E-10 3E-15 129.7 8.1 80 1064-1149 153-235 (330)
248 COG4161 ArtP ABC-type arginine 99.1 2.3E-10 4.9E-15 105.1 7.9 89 1056-1150 128-218 (242)
249 PRK15112 antimicrobial peptide 99.1 1.4E-10 3E-15 126.3 7.8 76 1065-1144 145-223 (267)
250 cd03277 ABC_SMC5_euk Eukaryoti 99.1 1.8E-10 4E-15 119.5 8.3 86 1064-1149 121-210 (213)
251 PRK14257 phosphate ABC transpo 99.1 1.7E-10 3.6E-15 128.3 8.6 79 1065-1149 221-300 (329)
252 PRK13641 cbiO cobalt transport 99.1 2E-10 4.4E-15 126.1 9.1 77 1064-1144 140-218 (287)
253 PRK09473 oppD oligopeptide tra 99.1 1.4E-10 3.1E-15 129.1 8.0 79 1065-1149 157-238 (330)
254 PRK14272 phosphate ABC transpo 99.1 1.8E-10 3.8E-15 124.8 8.6 80 1064-1149 143-223 (252)
255 PRK14240 phosphate transporter 99.1 2.2E-10 4.7E-15 123.8 9.2 77 1064-1144 141-218 (250)
256 PRK13640 cbiO cobalt transport 99.1 1.7E-10 3.7E-15 126.3 8.5 80 1064-1149 138-219 (282)
257 PRK11231 fecE iron-dicitrate t 99.1 1.4E-10 3.1E-15 125.5 7.7 82 1063-1150 132-215 (255)
258 PRK11300 livG leucine/isoleuci 99.1 1.6E-10 3.5E-15 125.4 8.2 78 1063-1144 147-227 (255)
259 PRK09984 phosphonate/organopho 99.1 1.5E-10 3.3E-15 125.8 8.0 77 1064-1144 147-226 (262)
260 COG1132 MdlB ABC-type multidru 99.1 1.8E-10 3.8E-15 140.3 9.4 88 1066-1160 462-549 (567)
261 PRK13541 cytochrome c biogenes 99.1 1.7E-10 3.7E-15 119.3 7.9 74 1064-1141 118-192 (195)
262 TIGR02323 CP_lyasePhnK phospho 99.1 1.5E-10 3.2E-15 125.5 7.8 80 1064-1149 143-225 (253)
263 PRK13645 cbiO cobalt transport 99.1 1.6E-10 3.5E-15 127.4 8.2 80 1064-1149 145-227 (289)
264 PRK14250 phosphate ABC transpo 99.1 1.9E-10 4.1E-15 123.3 8.5 80 1064-1149 126-208 (241)
265 PRK11144 modC molybdate transp 99.1 1.5E-10 3.2E-15 130.5 8.0 76 1064-1143 123-201 (352)
266 TIGR01978 sufC FeS assembly AT 99.1 1.8E-10 3.8E-15 124.2 8.3 75 1065-1143 139-217 (243)
267 KOG0057 Mitochondrial Fe/S clu 99.1 1.9E-10 4.1E-15 127.4 8.5 76 1066-1145 484-559 (591)
268 PRK13548 hmuV hemin importer A 99.1 2E-10 4.3E-15 124.3 8.6 85 1063-1149 128-217 (258)
269 PRK14238 phosphate transporter 99.1 1.9E-10 4.2E-15 125.3 8.6 80 1064-1149 162-242 (271)
270 PRK14274 phosphate ABC transpo 99.1 2.2E-10 4.8E-15 124.4 9.0 77 1064-1144 150-227 (259)
271 PRK13539 cytochrome c biogenes 99.1 2.1E-10 4.5E-15 119.7 8.4 78 1064-1146 122-200 (207)
272 KOG0058 Peptide exporter, ABC 99.1 1.5E-10 3.2E-15 133.2 7.8 73 1066-1142 601-673 (716)
273 PRK14270 phosphate ABC transpo 99.1 2.2E-10 4.7E-15 123.9 8.8 76 1065-1144 143-219 (251)
274 PRK14244 phosphate ABC transpo 99.1 2.3E-10 4.9E-15 123.7 8.9 76 1065-1144 145-221 (251)
275 cd03215 ABC_Carb_Monos_II This 99.1 1.7E-10 3.7E-15 117.7 7.4 70 1070-1143 105-176 (182)
276 COG4778 PhnL ABC-type phosphon 99.1 8.4E-11 1.8E-15 109.1 4.6 82 1061-1146 144-227 (235)
277 COG4525 TauB ABC-type taurine 99.1 1.7E-10 3.7E-15 109.9 6.7 92 1057-1154 120-214 (259)
278 COG1123 ATPase components of v 99.1 1.6E-10 3.5E-15 131.0 7.9 83 1056-1142 139-226 (539)
279 cd00267 ABC_ATPase ABC (ATP-bi 99.1 2.5E-10 5.3E-15 113.6 8.3 72 1070-1145 81-154 (157)
280 PRK15056 manganese/iron transp 99.1 2E-10 4.4E-15 125.3 8.2 75 1064-1142 137-213 (272)
281 PRK14256 phosphate ABC transpo 99.1 2.4E-10 5.1E-15 123.6 8.7 79 1065-1149 144-223 (252)
282 PRK14251 phosphate ABC transpo 99.1 2.1E-10 4.5E-15 124.1 8.2 80 1064-1149 142-222 (251)
283 COG1123 ATPase components of v 99.1 1.4E-10 3E-15 131.6 7.0 75 1064-1142 424-501 (539)
284 TIGR02769 nickel_nikE nickel i 99.1 2.1E-10 4.6E-15 124.7 8.2 77 1064-1144 145-224 (265)
285 PRK04778 septation ring format 99.1 3.5E-06 7.5E-11 101.4 44.8 137 885-1029 389-526 (569)
286 cd03234 ABCG_White The White s 99.1 2.6E-10 5.6E-15 121.1 8.6 77 1064-1144 138-217 (226)
287 cd03289 ABCC_CFTR2 The CFTR su 99.1 2.2E-10 4.9E-15 123.8 8.2 73 1067-1143 136-208 (275)
288 PRK11176 lipid transporter ATP 99.1 2E-10 4.4E-15 140.6 9.0 77 1067-1149 478-554 (582)
289 cd03276 ABC_SMC6_euk Eukaryoti 99.1 2.1E-10 4.6E-15 117.9 7.6 82 1060-1141 100-185 (198)
290 PRK14263 phosphate ABC transpo 99.1 2.6E-10 5.7E-15 123.3 8.7 76 1065-1144 145-221 (261)
291 cd03213 ABCG_EPDR ABCG transpo 99.1 3.2E-10 7E-15 116.8 8.9 72 1069-1144 111-185 (194)
292 PRK13545 tagH teichoic acids e 99.1 2.5E-10 5.5E-15 130.0 8.7 80 1064-1149 138-219 (549)
293 PRK10895 lipopolysaccharide AB 99.1 2.3E-10 4.9E-15 123.0 8.1 77 1064-1144 132-210 (241)
294 PRK13652 cbiO cobalt transport 99.1 2.6E-10 5.6E-15 124.8 8.5 80 1064-1149 132-214 (277)
295 cd03271 ABC_UvrA_II The excisi 99.1 3.1E-10 6.7E-15 120.4 8.8 80 1064-1144 164-244 (261)
296 TIGR02142 modC_ABC molybdenum 99.1 2.3E-10 5E-15 129.2 8.4 76 1064-1143 126-204 (354)
297 PRK11432 fbpC ferric transport 99.1 2E-10 4.3E-15 128.6 7.7 81 1063-1149 130-213 (351)
298 TIGR03265 PhnT2 putative 2-ami 99.1 2E-10 4.3E-15 128.9 7.6 82 1062-1149 127-211 (353)
299 cd03227 ABC_Class2 ABC-type Cl 99.1 3.1E-10 6.8E-15 113.0 8.2 84 1068-1151 76-161 (162)
300 PRK09580 sufC cysteine desulfu 99.1 3E-10 6.5E-15 122.8 8.8 75 1069-1149 145-222 (248)
301 PRK14264 phosphate ABC transpo 99.1 3.4E-10 7.3E-15 125.3 9.3 75 1064-1142 195-270 (305)
302 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.1 4.2E-10 9E-15 109.4 8.8 70 1068-1143 69-139 (144)
303 cd03300 ABC_PotA_N PotA is an 99.1 2.4E-10 5.1E-15 121.9 7.8 77 1064-1144 125-204 (232)
304 PRK14253 phosphate ABC transpo 99.1 3.5E-10 7.5E-15 122.2 9.2 77 1064-1144 140-217 (249)
305 PRK14254 phosphate ABC transpo 99.1 3.2E-10 6.8E-15 124.2 8.9 75 1064-1142 175-250 (285)
306 COG1137 YhbG ABC-type (unclass 99.1 2.5E-10 5.5E-15 109.6 6.9 78 1064-1145 134-213 (243)
307 PRK14243 phosphate transporter 99.1 3.1E-10 6.8E-15 123.2 8.6 78 1064-1145 146-224 (264)
308 PRK14237 phosphate transporter 99.1 3.7E-10 8.1E-15 122.9 9.2 77 1064-1144 158-235 (267)
309 PRK14260 phosphate ABC transpo 99.1 3.1E-10 6.6E-15 123.2 8.5 78 1064-1145 145-223 (259)
310 PRK10418 nikD nickel transport 99.1 2.9E-10 6.3E-15 122.9 8.3 80 1064-1149 135-217 (254)
311 TIGR00968 3a0106s01 sulfate AB 99.1 2.9E-10 6.3E-15 121.5 8.1 77 1064-1144 125-204 (237)
312 PRK10790 putative multidrug tr 99.1 2.5E-10 5.5E-15 139.9 8.7 79 1067-1151 474-552 (592)
313 cd03231 ABC_CcmA_heme_exporter 99.1 3.1E-10 6.6E-15 117.9 8.0 75 1064-1142 120-196 (201)
314 PRK13547 hmuV hemin importer A 99.1 3E-10 6.5E-15 123.2 8.2 82 1063-1144 139-228 (272)
315 PRK14275 phosphate ABC transpo 99.1 3.8E-10 8.2E-15 123.8 9.0 80 1064-1149 177-257 (286)
316 PRK14249 phosphate ABC transpo 99.1 4E-10 8.7E-15 121.8 9.1 81 1064-1150 142-223 (251)
317 PRK10419 nikE nickel transport 99.1 3.3E-10 7.1E-15 123.3 8.4 77 1064-1144 146-225 (268)
318 cd03288 ABCC_SUR2 The SUR doma 99.1 4.9E-10 1.1E-14 121.3 9.7 80 1065-1150 152-231 (257)
319 TIGR01189 ccmA heme ABC export 99.0 3.3E-10 7.2E-15 117.5 8.0 69 1064-1136 122-191 (198)
320 PRK15177 Vi polysaccharide exp 99.0 3.3E-10 7.3E-15 118.4 8.0 77 1063-1143 98-175 (213)
321 COG4619 ABC-type uncharacteriz 99.0 3.4E-10 7.4E-15 105.1 6.9 79 1063-1145 127-208 (223)
322 cd03290 ABCC_SUR1_N The SUR do 99.0 4E-10 8.7E-15 119.0 8.6 74 1065-1142 136-212 (218)
323 PRK13409 putative ATPase RIL; 99.0 2.5E-10 5.4E-15 136.9 7.9 77 1064-1144 448-527 (590)
324 PRK03695 vitamin B12-transport 99.0 4.1E-10 8.9E-15 121.1 8.8 84 1064-1149 121-209 (248)
325 PRK02224 chromosome segregatio 99.0 0.0004 8.6E-09 90.0 85.8 149 998-1155 718-879 (880)
326 PRK14261 phosphate ABC transpo 99.0 4.1E-10 9E-15 121.8 8.8 81 1064-1150 144-225 (253)
327 TIGR01192 chvA glucan exporter 99.0 3.6E-10 7.8E-15 137.4 9.2 79 1065-1149 467-545 (585)
328 COG4618 ArpD ABC-type protease 99.0 4.2E-10 9.1E-15 123.3 8.4 72 1067-1142 470-542 (580)
329 TIGR03269 met_CoM_red_A2 methy 99.0 2.9E-10 6.4E-15 136.7 8.0 81 1063-1149 162-245 (520)
330 CHL00131 ycf16 sulfate ABC tra 99.0 4E-10 8.8E-15 122.0 8.3 75 1065-1143 146-224 (252)
331 PRK14236 phosphate transporter 99.0 4.9E-10 1.1E-14 122.3 9.0 79 1065-1149 164-243 (272)
332 TIGR03375 type_I_sec_LssB type 99.0 3.4E-10 7.5E-15 141.2 8.8 78 1067-1150 599-676 (694)
333 cd03299 ABC_ModC_like Archeal 99.0 4.2E-10 9.1E-15 120.1 8.2 77 1064-1144 124-203 (235)
334 PRK14271 phosphate ABC transpo 99.0 5.1E-10 1.1E-14 122.1 8.9 79 1065-1149 159-238 (276)
335 COG4175 ProV ABC-type proline/ 99.0 3.4E-10 7.4E-15 116.5 7.0 88 1056-1149 151-241 (386)
336 cd03279 ABC_sbcCD SbcCD and ot 99.0 6.6E-10 1.4E-14 116.4 9.3 88 1064-1151 118-212 (213)
337 TIGR02857 CydD thiol reductant 99.0 3.9E-10 8.5E-15 136.3 8.7 74 1066-1143 455-528 (529)
338 PTZ00265 multidrug resistance 99.0 5.2E-10 1.1E-14 147.3 10.3 90 1067-1160 1356-1449(1466)
339 PRK14246 phosphate ABC transpo 99.0 6E-10 1.3E-14 120.2 9.0 76 1065-1144 149-225 (257)
340 PRK13546 teichoic acids export 99.0 6.4E-10 1.4E-14 119.9 9.1 80 1064-1149 138-219 (264)
341 PRK14252 phosphate ABC transpo 99.0 5.3E-10 1.2E-14 121.7 8.5 75 1065-1143 157-232 (265)
342 PRK10789 putative multidrug tr 99.0 5.2E-10 1.1E-14 135.9 9.3 78 1066-1149 448-525 (569)
343 TIGR03797 NHPM_micro_ABC2 NHPM 99.0 5E-10 1.1E-14 139.5 9.4 76 1067-1150 586-661 (686)
344 PRK14258 phosphate ABC transpo 99.0 5.9E-10 1.3E-14 121.0 8.7 77 1064-1144 145-224 (261)
345 PRK11160 cysteine/glutathione 99.0 5E-10 1.1E-14 136.0 9.1 79 1066-1150 472-550 (574)
346 KOG0055 Multidrug/pheromone ex 99.0 3.7E-10 8E-15 138.0 7.7 79 1066-1150 1123-1201(1228)
347 cd03250 ABCC_MRP_domain1 Domai 99.0 8.8E-10 1.9E-14 115.0 9.4 75 1065-1143 123-199 (204)
348 PRK10938 putative molybdenum t 99.0 4.7E-10 1E-14 134.0 8.4 78 1062-1143 128-207 (490)
349 COG4608 AppF ABC-type oligopep 99.0 3.6E-10 7.9E-15 116.1 6.2 82 1056-1141 95-180 (268)
350 cd03227 ABC_Class2 ABC-type Cl 99.0 2.4E-10 5.2E-15 113.8 4.8 71 5-83 1-71 (162)
351 cd03236 ABC_RNaseL_inhibitor_d 99.0 8.5E-10 1.8E-14 118.1 9.3 77 1064-1144 134-212 (255)
352 PRK15439 autoinducer 2 ABC tra 99.0 4.5E-10 9.8E-15 134.3 8.0 80 1064-1149 398-479 (510)
353 COG4172 ABC-type uncharacteriz 99.0 4.5E-10 9.7E-15 119.1 6.9 90 1064-1161 152-244 (534)
354 COG4559 ABC-type hemin transpo 99.0 8.3E-10 1.8E-14 107.1 8.1 94 1054-1149 120-217 (259)
355 PRK15134 microcin C ABC transp 99.0 4.6E-10 9.9E-15 135.2 8.0 81 1064-1150 151-234 (529)
356 PRK11607 potG putrescine trans 99.0 4.9E-10 1.1E-14 126.6 7.5 80 1060-1143 140-222 (377)
357 cd03291 ABCC_CFTR1 The CFTR su 99.0 9.6E-10 2.1E-14 119.3 9.4 79 1066-1150 156-235 (282)
358 PRK10762 D-ribose transporter 99.0 7.1E-10 1.5E-14 132.6 8.9 81 1060-1144 132-214 (501)
359 PRK13549 xylose transporter AT 99.0 6.5E-10 1.4E-14 133.0 8.6 78 1063-1144 137-216 (506)
360 PRK09700 D-allose transporter 99.0 7.2E-10 1.6E-14 133.0 8.9 80 1064-1149 404-485 (510)
361 PRK09700 D-allose transporter 99.0 8E-10 1.7E-14 132.6 9.2 81 1060-1144 136-218 (510)
362 PRK15439 autoinducer 2 ABC tra 99.0 8.2E-10 1.8E-14 132.0 9.3 78 1063-1144 134-213 (510)
363 PRK11288 araG L-arabinose tran 99.0 7.2E-10 1.6E-14 132.5 8.7 80 1064-1149 391-472 (501)
364 PRK14266 phosphate ABC transpo 99.0 8.7E-10 1.9E-14 119.2 8.5 75 1064-1142 141-216 (250)
365 PRK10982 galactose/methyl gala 99.0 7.6E-10 1.6E-14 132.1 8.7 76 1064-1143 129-206 (491)
366 TIGR02204 MsbA_rel ABC transpo 99.0 7.6E-10 1.7E-14 135.6 8.9 78 1067-1150 474-551 (576)
367 TIGR03796 NHPM_micro_ABC1 NHPM 99.0 6.8E-10 1.5E-14 139.1 8.6 76 1067-1150 613-688 (710)
368 TIGR01193 bacteriocin_ABC ABC- 99.0 7.1E-10 1.5E-14 138.7 8.7 78 1067-1151 609-686 (708)
369 PRK15134 microcin C ABC transp 99.0 6E-10 1.3E-14 134.2 7.7 81 1064-1150 420-503 (529)
370 TIGR01846 type_I_sec_HlyB type 99.0 8E-10 1.7E-14 137.7 8.9 78 1067-1150 591-668 (694)
371 PRK11288 araG L-arabinose tran 99.0 8.3E-10 1.8E-14 132.0 8.6 80 1064-1149 135-216 (501)
372 TIGR01842 type_I_sec_PrtD type 99.0 1.1E-09 2.3E-14 132.6 9.4 79 1066-1150 451-530 (544)
373 PRK10522 multidrug transporter 99.0 1.3E-09 2.8E-14 131.9 10.1 77 1068-1150 448-526 (547)
374 PRK13549 xylose transporter AT 99.0 9.1E-10 2E-14 131.8 8.6 81 1064-1150 400-482 (506)
375 PRK03918 chromosome segregatio 99.0 0.00076 1.6E-08 87.6 79.5 138 1016-1157 739-879 (880)
376 TIGR02633 xylG D-xylose ABC tr 99.0 9.2E-10 2E-14 131.8 8.4 80 1065-1150 399-480 (500)
377 TIGR00958 3a01208 Conjugate Tr 99.0 1.2E-09 2.5E-14 136.0 9.6 75 1067-1149 615-689 (711)
378 cd03233 ABC_PDR_domain1 The pl 99.0 1.3E-09 2.8E-14 113.1 8.4 80 1064-1149 113-196 (202)
379 TIGR01194 cyc_pep_trnsptr cycl 99.0 1.2E-09 2.5E-14 132.2 9.1 78 1067-1150 468-547 (555)
380 PRK10938 putative molybdenum t 99.0 8.7E-10 1.9E-14 131.7 7.8 79 1065-1149 397-479 (490)
381 PRK10636 putative ABC transpor 99.0 1.1E-09 2.4E-14 133.7 8.7 79 1064-1150 425-504 (638)
382 PRK13409 putative ATPase RIL; 99.0 1.2E-09 2.6E-14 131.1 8.6 75 1064-1142 207-282 (590)
383 PRK10982 galactose/methyl gala 99.0 1.1E-09 2.3E-14 130.8 8.2 77 1064-1144 386-464 (491)
384 PRK10762 D-ribose transporter 98.9 1.3E-09 2.8E-14 130.3 8.7 80 1064-1149 390-471 (501)
385 PRK10261 glutathione transport 98.9 9.9E-10 2.1E-14 134.1 7.7 76 1064-1143 163-241 (623)
386 PRK10261 glutathione transport 98.9 1.3E-09 2.7E-14 133.2 8.5 80 1064-1149 458-540 (623)
387 TIGR03269 met_CoM_red_A2 methy 98.9 1.2E-09 2.6E-14 131.4 8.2 81 1064-1150 422-505 (520)
388 COG3839 MalK ABC-type sugar tr 98.9 1.1E-09 2.4E-14 118.3 6.6 80 1058-1141 122-204 (338)
389 TIGR02633 xylG D-xylose ABC tr 98.9 1.6E-09 3.4E-14 129.8 8.4 79 1065-1149 137-217 (500)
390 TIGR02868 CydC thiol reductant 98.9 1.7E-09 3.7E-14 130.8 8.6 62 1067-1132 468-529 (529)
391 COG3842 PotA ABC-type spermidi 98.9 8.6E-10 1.9E-14 119.9 5.3 89 1056-1150 123-214 (352)
392 COG4172 ABC-type uncharacteriz 98.9 1.1E-09 2.5E-14 116.1 5.8 80 1064-1149 421-503 (534)
393 TIGR00954 3a01203 Peroxysomal 98.9 2E-09 4.3E-14 131.9 8.8 72 1067-1144 580-651 (659)
394 COG4148 ModC ABC-type molybdat 98.9 1.6E-09 3.4E-14 109.6 5.7 88 1057-1150 116-206 (352)
395 COG1129 MglA ABC-type sugar tr 98.9 3.3E-09 7.1E-14 119.7 8.6 82 1063-1150 139-222 (500)
396 TIGR03719 ABC_ABC_ChvD ATP-bin 98.9 2.9E-09 6.2E-14 128.7 8.9 74 1064-1143 438-512 (552)
397 COG0411 LivG ABC-type branched 98.9 3.8E-09 8.3E-14 106.1 8.1 86 1054-1143 134-222 (250)
398 PRK15064 ABC transporter ATP-b 98.9 2.9E-09 6.3E-14 128.3 8.9 79 1063-1149 432-511 (530)
399 PRK10636 putative ABC transpor 98.9 2.7E-09 5.9E-14 130.3 8.6 80 1063-1150 143-223 (638)
400 PF13166 AAA_13: AAA domain 98.9 1.5E-06 3.3E-11 109.4 33.5 94 1065-1158 496-609 (712)
401 TIGR00630 uvra excinuclease AB 98.9 3.2E-09 7E-14 131.3 8.8 78 1064-1144 482-561 (924)
402 PTZ00265 multidrug resistance 98.9 3.7E-09 8.1E-14 139.3 9.7 77 1065-1145 575-653 (1466)
403 KOG0056 Heavy metal exporter H 98.9 2.6E-09 5.6E-14 115.5 6.7 87 1067-1160 672-758 (790)
404 COG5265 ATM1 ABC-type transpor 98.9 2.6E-09 5.5E-14 114.4 6.3 85 1068-1159 398-482 (497)
405 COG4555 NatA ABC-type Na+ tran 98.9 2.8E-09 6.2E-14 102.6 5.9 83 1057-1143 121-205 (245)
406 TIGR01257 rim_protein retinal- 98.9 4.6E-09 1E-13 138.4 9.6 82 1058-1143 1050-1132(2272)
407 TIGR03719 ABC_ABC_ChvD ATP-bin 98.9 4.2E-09 9.2E-14 127.3 8.6 79 1064-1150 156-235 (552)
408 PRK15064 ABC transporter ATP-b 98.9 4.3E-09 9.2E-14 126.9 8.6 78 1065-1150 151-229 (530)
409 PRK11819 putative ABC transpor 98.9 4.2E-09 9.2E-14 127.2 8.6 78 1064-1149 158-236 (556)
410 PLN03073 ABC transporter F fam 98.9 4.7E-09 1E-13 128.3 9.0 79 1064-1150 622-701 (718)
411 PRK11147 ABC transporter ATPas 98.8 4.7E-09 1E-13 128.7 8.8 79 1064-1150 151-230 (635)
412 PRK11147 ABC transporter ATPas 98.8 4.5E-09 9.8E-14 128.8 8.6 76 1063-1144 434-510 (635)
413 COG3950 Predicted ATP-binding 98.8 1.4E-09 3.1E-14 112.7 2.9 49 1-51 1-50 (440)
414 PLN03130 ABC transporter C fam 98.8 6.7E-09 1.5E-13 138.4 9.8 78 1067-1150 1372-1449(1622)
415 PLN03211 ABC transporter G-25; 98.8 5.6E-09 1.2E-13 127.1 8.3 78 1066-1149 203-283 (659)
416 PRK11819 putative ABC transpor 98.8 6.4E-09 1.4E-13 125.7 8.8 74 1064-1143 440-514 (556)
417 PLN03232 ABC transporter C fam 98.8 5.7E-09 1.2E-13 139.1 9.0 77 1067-1149 1369-1445(1495)
418 PTZ00243 ABC transporter; Prov 98.8 7.7E-09 1.7E-13 137.7 9.7 76 1068-1149 1444-1520(1560)
419 PRK00349 uvrA excinuclease ABC 98.8 6.2E-09 1.3E-13 129.1 8.0 77 1065-1144 485-563 (943)
420 PLN03073 ABC transporter F fam 98.8 8E-09 1.7E-13 126.3 8.8 79 1064-1150 339-418 (718)
421 TIGR01271 CFTR_protein cystic 98.8 8.9E-09 1.9E-13 137.0 9.6 77 1068-1150 1352-1428(1490)
422 TIGR00957 MRP_assoc_pro multi 98.8 9.1E-09 2E-13 137.4 9.6 78 1067-1150 1419-1496(1522)
423 COG4133 CcmA ABC-type transpor 98.8 1.2E-08 2.7E-13 97.5 7.2 79 1056-1138 117-196 (209)
424 COG0488 Uup ATPase components 98.8 1.1E-08 2.5E-13 119.0 8.0 76 1064-1145 148-224 (530)
425 PRK10535 macrolide transporter 98.8 1.1E-08 2.4E-13 125.4 8.4 77 1064-1144 139-216 (648)
426 COG0396 sufC Cysteine desulfur 98.8 1.6E-08 3.4E-13 100.2 7.4 70 1069-1142 144-216 (251)
427 COG3096 MukB Uncharacterized p 98.8 0.001 2.3E-08 75.7 85.3 47 2-50 6-52 (1480)
428 KOG4674 Uncharacterized conser 98.8 0.0033 7.1E-08 81.2 89.5 85 781-865 668-752 (1822)
429 PRK00635 excinuclease ABC subu 98.7 1.5E-08 3.3E-13 131.2 8.7 76 1065-1144 472-550 (1809)
430 TIGR01257 rim_protein retinal- 98.7 1.6E-08 3.4E-13 133.5 9.0 79 1061-1143 2062-2142(2272)
431 COG4604 CeuD ABC-type enteroch 98.7 6.4E-09 1.4E-13 99.7 3.5 86 1058-1149 124-212 (252)
432 COG4152 ABC-type uncharacteriz 98.7 1.8E-08 4E-13 100.1 6.4 80 1059-1142 120-201 (300)
433 PF11398 DUF2813: Protein of u 98.7 3.1E-08 6.7E-13 109.3 8.7 61 1-66 1-61 (373)
434 COG1119 ModF ABC-type molybden 98.7 2.9E-08 6.2E-13 99.8 7.6 73 1057-1133 159-234 (257)
435 COG0488 Uup ATPase components 98.7 2.1E-08 4.7E-13 116.7 7.7 76 1064-1145 434-510 (530)
436 COG0410 LivF ABC-type branched 98.7 3.5E-08 7.5E-13 98.5 7.9 81 1063-1149 130-213 (237)
437 PRK00349 uvrA excinuclease ABC 98.7 2.7E-08 5.8E-13 123.5 8.6 77 1064-1144 825-905 (943)
438 PLN03232 ABC transporter C fam 98.7 2.8E-08 6.1E-13 132.6 8.3 77 1067-1149 738-815 (1495)
439 PLN03130 ABC transporter C fam 98.7 3.5E-08 7.5E-13 131.7 9.1 78 1067-1150 738-816 (1622)
440 TIGR00630 uvra excinuclease AB 98.7 4.4E-08 9.5E-13 121.4 9.0 80 1064-1144 823-903 (924)
441 COG1245 Predicted ATPase, RNas 98.7 4.6E-08 9.9E-13 105.8 7.5 84 1064-1151 450-536 (591)
442 TIGR00957 MRP_assoc_pro multi 98.6 4.9E-08 1.1E-12 130.5 9.1 76 1065-1144 756-834 (1522)
443 TIGR00955 3a01204 The Eye Pigm 98.6 4.3E-08 9.4E-13 119.7 7.7 76 1068-1149 165-243 (617)
444 PLN03140 ABC transporter G fam 98.6 5.5E-08 1.2E-12 127.8 9.0 73 1067-1143 1017-1092(1470)
445 COG1101 PhnK ABC-type uncharac 98.6 5.3E-08 1.1E-12 95.0 6.4 75 1064-1142 143-220 (263)
446 TIGR01271 CFTR_protein cystic 98.6 6.1E-08 1.3E-12 129.2 9.3 75 1066-1144 545-620 (1490)
447 PRK00635 excinuclease ABC subu 98.6 6.3E-08 1.4E-12 125.7 8.8 80 1064-1144 804-884 (1809)
448 COG1106 Predicted ATPases [Gen 98.6 2.2E-08 4.7E-13 109.5 3.7 48 2-51 1-48 (371)
449 PF00261 Tropomyosin: Tropomyo 98.6 8.5E-05 1.8E-09 78.6 30.6 9 339-347 95-103 (237)
450 COG1245 Predicted ATPase, RNas 98.6 9.5E-08 2.1E-12 103.4 8.2 75 1063-1141 207-283 (591)
451 TIGR00956 3a01205 Pleiotropic 98.5 1.2E-07 2.7E-12 125.1 8.6 71 1069-1143 901-975 (1394)
452 TIGR00956 3a01205 Pleiotropic 98.5 1E-07 2.2E-12 125.9 7.1 75 1066-1144 206-284 (1394)
453 PTZ00243 ABC transporter; Prov 98.5 1.8E-07 3.9E-12 124.8 8.7 80 1065-1150 778-858 (1560)
454 KOG0062 ATPase component of AB 98.5 2E-07 4.3E-12 102.8 7.0 75 1064-1144 477-552 (582)
455 COG3845 ABC-type uncharacteriz 98.5 2.9E-07 6.2E-12 101.8 7.9 78 1060-1141 131-210 (501)
456 PF00261 Tropomyosin: Tropomyo 98.5 0.00024 5.1E-09 75.2 29.7 25 418-442 175-199 (237)
457 PRK00064 recF recombination pr 98.5 2.6E-06 5.6E-11 96.4 15.5 69 1065-1135 269-342 (361)
458 COG4586 ABC-type uncharacteriz 98.5 3.3E-07 7.2E-12 93.0 7.1 82 1060-1145 147-231 (325)
459 KOG0979 Structural maintenance 98.4 0.011 2.4E-07 71.1 65.3 58 979-1036 861-921 (1072)
460 PLN03140 ABC transporter G fam 98.4 1.2E-07 2.5E-12 124.7 4.6 79 1065-1149 332-414 (1470)
461 COG3593 Predicted ATP-dependen 98.4 1.8E-07 4E-12 107.8 4.5 63 1-67 1-63 (581)
462 COG4674 Uncharacterized ABC-ty 98.4 2.5E-07 5.5E-12 88.8 4.5 87 1051-1141 129-216 (249)
463 COG4637 Predicted ATPase [Gene 98.4 1.3E-07 2.7E-12 97.8 2.6 45 1-48 1-45 (373)
464 PF12128 DUF3584: Protein of u 98.4 0.035 7.5E-07 73.6 85.0 38 22-60 15-52 (1201)
465 TIGR00611 recf recF protein. A 98.4 1.1E-05 2.4E-10 91.1 17.4 67 1067-1135 273-344 (365)
466 PF01576 Myosin_tail_1: Myosin 98.4 7.8E-08 1.7E-12 119.9 0.0 65 396-460 241-305 (859)
467 KOG0062 ATPase component of AB 98.4 6.2E-07 1.3E-11 99.0 6.8 67 1064-1136 193-259 (582)
468 COG4136 ABC-type uncharacteriz 98.3 8E-07 1.7E-11 81.3 6.0 79 1056-1138 121-201 (213)
469 KOG0971 Microtubule-associated 98.3 0.012 2.5E-07 69.3 40.2 54 949-1003 459-512 (1243)
470 COG4107 PhnK ABC-type phosphon 98.3 1.4E-06 3.1E-11 81.7 7.4 75 1064-1142 146-223 (258)
471 KOG0066 eIF2-interacting prote 98.3 9.6E-07 2.1E-11 94.5 7.0 83 1066-1154 701-783 (807)
472 KOG1029 Endocytic adaptor prot 98.3 0.0039 8.5E-08 71.8 35.6 163 294-462 416-578 (1118)
473 COG0178 UvrA Excinuclease ATPa 98.3 1.3E-06 2.8E-11 101.9 8.3 83 1064-1147 817-900 (935)
474 PF13175 AAA_15: AAA ATPase do 98.3 4.3E-07 9.3E-12 107.1 4.7 70 1065-1134 337-414 (415)
475 COG4178 ABC-type uncharacteriz 98.3 1.2E-06 2.5E-11 101.5 7.6 73 1068-1144 514-586 (604)
476 COG1129 MglA ABC-type sugar tr 98.3 1.3E-06 2.8E-11 99.1 7.8 79 1065-1149 397-477 (500)
477 cd03242 ABC_RecF RecF is a rec 98.3 3.4E-06 7.5E-11 91.8 10.8 70 1066-1138 180-255 (270)
478 PRK04778 septation ring format 98.3 0.025 5.4E-07 68.5 44.2 80 947-1028 350-429 (569)
479 COG5293 Predicted ATPase [Gene 98.2 0.013 2.7E-07 63.9 35.4 33 22-54 22-65 (591)
480 KOG0054 Multidrug resistance-a 98.2 1.9E-06 4.1E-11 109.1 7.9 79 1066-1150 640-719 (1381)
481 PF13558 SbcCD_C: Putative exo 98.2 2.7E-06 5.8E-11 74.5 6.6 54 1064-1117 27-89 (90)
482 KOG0927 Predicted transporter 98.2 1.7E-06 3.8E-11 96.2 5.9 73 1064-1142 504-577 (614)
483 PF07888 CALCOCO1: Calcium bin 98.2 0.028 6.1E-07 64.7 42.6 10 421-430 373-382 (546)
484 cd03280 ABC_MutS2 MutS2 homolo 98.2 1.9E-06 4.1E-11 89.3 5.4 77 1063-1144 85-163 (200)
485 KOG0059 Lipid exporter ABCA1 a 98.2 1.9E-06 4E-11 109.1 6.0 77 1061-1141 690-768 (885)
486 KOG0061 Transporter, ABC super 98.2 2.6E-06 5.7E-11 102.7 6.9 72 1068-1143 169-243 (613)
487 PF13304 AAA_21: AAA domain; P 98.1 4.9E-06 1.1E-10 92.3 8.6 70 1064-1135 231-302 (303)
488 KOG0977 Nuclear envelope prote 98.1 0.037 8.1E-07 63.7 39.9 23 988-1010 342-364 (546)
489 KOG0927 Predicted transporter 98.1 5.4E-06 1.2E-10 92.3 7.6 80 1064-1148 216-296 (614)
490 PF01576 Myosin_tail_1: Myosin 98.1 5.8E-07 1.3E-11 112.3 0.0 40 726-765 459-498 (859)
491 PF10174 Cast: RIM-binding pro 98.1 0.067 1.5E-06 65.4 69.1 57 400-456 109-165 (775)
492 COG4694 Uncharacterized protei 98.1 0.00042 9.2E-09 76.8 21.1 147 983-1139 447-602 (758)
493 KOG0977 Nuclear envelope prote 98.1 0.028 6.1E-07 64.7 36.0 37 246-282 94-130 (546)
494 PF13166 AAA_13: AAA domain 98.1 0.066 1.4E-06 67.8 44.0 39 10-49 1-40 (712)
495 PF00038 Filament: Intermediat 98.0 0.034 7.4E-07 62.2 35.7 60 429-488 219-278 (312)
496 COG0178 UvrA Excinuclease ATPa 98.0 9.8E-06 2.1E-10 94.7 7.1 80 1065-1146 477-557 (935)
497 COG1340 Uncharacterized archae 98.0 0.031 6.7E-07 58.8 31.7 39 246-284 36-74 (294)
498 KOG0054 Multidrug resistance-a 98.0 1.3E-05 2.8E-10 101.7 8.4 72 1067-1142 1273-1344(1381)
499 COG3910 Predicted ATPase [Gene 98.0 5.4E-06 1.2E-10 79.3 3.4 35 22-56 34-68 (233)
500 COG4604 CeuD ABC-type enteroch 98.0 5E-06 1.1E-10 80.3 3.1 27 25-51 27-53 (252)
No 1
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.3e-140 Score=1185.32 Aligned_cols=1157 Identities=61% Similarity=0.884 Sum_probs=1081.4
Q ss_pred CceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEE
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVS 80 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~ 80 (1163)
|+|++|.|.|||||+.+|++.+|+|.||+|+|-||||||||||+|||+||.....+.|++++.|||+++|++|-..|+|+
T Consensus 1 M~IkeiiLDGFKSYa~rTvI~~fDp~FNAITGlNGSGKSNILDsICFvLGI~nl~~VRA~nlqeLIyk~GQAGiTkAsVs 80 (1174)
T KOG0933|consen 1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDSICFVLGITNLSQVRASNLQELIYKNGQAGITKASVS 80 (1174)
T ss_pred CchhhhhhcchhcceeeeeccCCCcccchhhcCCCCCchHHHHHHHHHHccchHHHHHHHHHHHHHHhcCcccceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCeEEEEEEEEeCCceeEEECCeecCHHHHHHHHHHcCCCCCCCceeeeCchhhHHhcCCchH
Q 001073 81 IVFDNSDRSRSPLGYEDHPEITVTRQIVVGGRNKYLINGKLAQPSQVQTLFHSVQLNVNNPHFLIMQGRITKVLNMKPPE 160 (1163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~~~~~~~in~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qg~v~~~~~~~p~~ 160 (1163)
|+|+|++..++|+||...++|+|+|.|..+|.+.|+|||+.+....++++|.+++++++||+|+|.||+|..+++|+|.+
T Consensus 81 VvFdNtdk~~SP~G~E~h~EIsVtRqIv~gG~~KylINGh~a~~~~vq~lF~SVqLNvNNP~FLIMQGrITkVLNMKp~E 160 (1174)
T KOG0933|consen 81 VVFDNTDKARSPLGYEHHDEISVTRQIVVGGTNKYLINGHLAQNSKVQDLFCSVQLNVNNPHFLIMQGRITKVLNMKPSE 160 (1174)
T ss_pred EEecCCCcccCCCCcccCCeeEEEEEEEecCceeEEEcCeeCchhHHHHHHHHhcccCCCCceEEecccchhhhcCCcHH
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001073 161 ILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINNLLDQEILPALEKLRKERTQYMQWANGNAELDRLRRFCIAYEYV 240 (1163)
Q Consensus 161 ~~~~~e~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 240 (1163)
.+.++|+++|+.+|+.+++.|.+.+...+..+.+++.+|.++|.+++..|+.++..|.+|+.+..+++.+...+.+++|.
T Consensus 161 ILsMvEEAAGTrmye~kKe~A~ktiekKetKlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~~~dle~l~R~~ia~eY~ 240 (1174)
T KOG0933|consen 161 ILSMVEEAAGTRMYENKKEAAEKTIEKKETKLKEINTLLREEILPRLEKLREERSQYLEYQKINRDLERLSRICIAYEYL 240 (1174)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHHHHHHHhhhhhh
Q 001073 241 QAEKIRDSAVGEVDRIKAKIAEIDCNTERTRLEIQEMEKQVSNLTAEKEASMGGEVKALSGKVDALSQDLVREVSVLNNK 320 (1163)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~ 320 (1163)
........+..++.+....+..+.+.......++..++.++.+++.+.++++...+..++.++..+.+.+.+....+...
T Consensus 241 ~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~ 320 (1174)
T KOG0933|consen 241 QAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLK 320 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHcccCCcch-hhhHHHH
Q 001073 321 DDTLRSEKENAEKIVRNIEDLKQAVEEKVSAVRKCEEGAADLKKKFEELSKGLEENEKEYQGVLAGKSSGNE-EKCLEDQ 399 (1163)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~ 399 (1163)
...+....++.+.+.+.+.+....+.............++.++....+....+...+..++.+......... ...+..+
T Consensus 321 ~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~q 400 (1174)
T KOG0933|consen 321 KETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQ 400 (1174)
T ss_pred HHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999887766333 5689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HH
Q 001073 400 LADAKVTVGSAETELKQLKTKISHCEKELKEKTHQLMSKREEAVSVESELNARRKDVENVKLALE-------------SD 466 (1163)
Q Consensus 400 i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~-------------~~ 466 (1163)
+..++..+......+.....+++.++.++...+.+......+.......+..++..++.++..+. ++
T Consensus 401 l~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l~q~ 480 (1174)
T KOG0933|consen 401 LRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEALKQR 480 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHH
Confidence 99999999999999999999999999998888877777776666666666666666666665444 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccCcccccCcCcccccccccccccCCchhHHHHHhhccCcccEEEcCcHHHH
Q 001073 467 RASEMAMAQKLKDEIRDLSAQLANVQFTYRDPVKNFDRAKVKGVVAKLIKVKDSSTMTALEVTAGGKLFNVIVDTESTGK 546 (1163)
Q Consensus 467 ~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~G~v~~~i~v~~~~~~~aie~~l~~~l~~vvv~~~~~a~ 546 (1163)
...+-..+..+...++.+...+.++.+.|.++.++|.+..|+|.|+.+|.|+|..|+.|++.++||.|++|||+|..+++
T Consensus 481 ~~~l~~~~~~lk~~~~~l~a~~~~~~f~Y~dP~~nfdrs~V~G~Va~Li~vkd~~~~tAle~~aGgrLynvVv~te~tgk 560 (1174)
T KOG0933|consen 481 RAKLHEDIGRLKDELDRLLARLANYEFTYQDPEPNFDRSKVKGLVAKLIKVKDRSYATALETTAGGRLYNVVVDTEDTGK 560 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccCCCCccchHHHHHHHHHHHheeCcchHHHHHHHHhcCcceeEEeechHHHH
Confidence 55566666677777777778888889999999899998899999999999999999999999999999999999999999
Q ss_pred HHHHccccCCceEEeecCCCCCCCCChhhHHHHHhhcCCchhHhhhhccCCChHHHHHHHHhcCCeEEecChHHHHHHHh
Q 001073 547 QLLQNGDLRRRVTIIPLNKIQSHTVPPRVQQAAVRLVGKENAELALSLVGYSDELKTAMEYVFGSTFVCKSIDAAKEVAF 626 (1163)
Q Consensus 547 ~ll~~~~~~~~~~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~l~d~i~~~~aie~al~~~l~nivv~~~~~~a~~I~~ 626 (1163)
.+|+......|+|++||+.|++..+++..+....... |+.+.+++++|+|++.+.+|+.|+||+++||++.+.|+.|+|
T Consensus 561 qLLq~g~l~rRvTiIPLnKI~s~~~s~~v~~~ak~v~-~~~v~~al~Li~yd~~l~~amefvFG~tlVc~~~d~AKkVaf 639 (1174)
T KOG0933|consen 561 QLLQRGNLRRRVTIIPLNKIQSFVLSPNVLQAAKNVG-NDNVELALSLIGYDDELKKAMEFVFGSTLVCDSLDVAKKVAF 639 (1174)
T ss_pred HHhhcccccceeEEEechhhhhccCCHhHHHHHHHhc-CchHHHHHHHhcCCHHHHHHHHHHhCceEEecCHHHHHHhhc
Confidence 9998766667999999999988788776665554443 888999999999999999999999999999999999999999
Q ss_pred hcCCCcceeecCCccccCCccccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 627 SREIRTPSVTLEGDIFQPSGLLTGGSRRGGGDLLRQLHRLAAVESNLVIHQKRLSEIEAKIKELLPFQKKYMDLKAQLEL 706 (1163)
Q Consensus 627 ~k~~~~~~vT~~G~~~~~~g~i~gg~~~~~~~~l~~~~~~~~l~~~l~~~~~~~~~i~~~i~~~~~~~~~i~~l~~~~~~ 706 (1163)
.+..+.+.||++||+|.|.|+++||+.+.+...+.....+.....++...+.++..+...++.+.....+...+..++..
T Consensus 640 ~~~i~~rsVTl~GDV~dP~GtlTGGs~~~~a~~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l 719 (1174)
T KOG0933|consen 640 DPKIRTRSVTLEGDVYDPSGTLTGGSRSKGADLLRQLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLEL 719 (1174)
T ss_pred ccccccceeeecCceeCCCCcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888999999999999999999776556777788888888899999999999999999999888888889999988
Q ss_pred HHhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 001073 707 KLYDLSLFQGRAEQNEHHKLSEIVKKIEQELEEAKSSAKEKQLLYENSVSAVSVLEKSIKEHDNNREGRLKDLEKKIKAI 786 (1163)
Q Consensus 707 ~~~~~~~~~g~~~~~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~~~~~~~~l~~~~~~~ 786 (1163)
....+..+......++.+.+...++.+..++..++.++.+....+......+..++..+.+.......++.++...+..+
T Consensus 720 ~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~ 799 (1174)
T KOG0933|consen 720 KLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTA 799 (1174)
T ss_pred HHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHH
Confidence 88877777777766666777888999999999999999999999999999999999999888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 787 KVQIQSASKDLKGHENERERLVMEHEAIVKEHASLENQLASVRMQINGLTSEVEEQKNKVAFTRTNHDQAQSELNAIRLK 866 (1163)
Q Consensus 787 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ 866 (1163)
....+.....+...+.++..+..+.+.+..++...+..+..++..+..+..++..+...+.........++.++......
T Consensus 800 k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k 879 (1174)
T KOG0933|consen 800 KQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAK 879 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhhcCCCCCccccCCCC
Q 001073 867 MKECDSQISGILKEQQKLQDKLGEAKLERKRLENEVKRMEMEQKDCSTKVDKLIEKHAWIASEKQLFGRSGTDYDFESRD 946 (1163)
Q Consensus 867 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1163)
+..++.++..+....+............+..+..++..+..+...+..+++.+....+|+......|+..+..++|++++
T Consensus 880 ~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~ 959 (1174)
T KOG0933|consen 880 QRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYD 959 (1174)
T ss_pred HHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCC
Confidence 99999999999888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 001073 947 PYKAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLKVTWVKVNKDF 1026 (1163)
Q Consensus 947 ~~~l~~~l~~l~~~~~~l~~~vn~~~~e~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~f 1026 (1163)
+.+...++..|+.....++..+|+.++..++..+..+..+....+.++..+.+|...|..+++...+.+..+|.+||..|
T Consensus 960 p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~k~~~L~kaw~~VN~dF 1039 (1174)
T KOG0933|consen 960 PHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDEKKREELNKAWEKVNKDF 1039 (1174)
T ss_pred HhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHhhhcCCccccccCCCCCcccccchhhhhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCH
Q 001073 1027 GSIFSTLLPGTMAKLEPPEGGNFLDGLEVCVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDL 1106 (1163)
Q Consensus 1027 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~ 1106 (1163)
+.||+.|+||..|.|.|+++.++..|+++.|.|++.|+.+++.|||||||+|||||+|||..+.|+|||||||+||+||.
T Consensus 1040 G~IFs~LLPga~AkL~Ppeg~~~~dGLEvkV~~G~iWKeSL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDL 1119 (1174)
T KOG0933|consen 1040 GSIFSTLLPGAMAKLEPPEGKTVLDGLEVKVKFGGIWKESLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDL 1119 (1174)
T ss_pred HHHHHHhCCCccccccCCCCCccccceEEEEEeCccHHHHHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcc
Confidence 99999999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeeeeCCceEEEEeec
Q 001073 1107 SHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVA 1158 (1163)
Q Consensus 1107 ~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~~~g~S~v~~~~~ 1158 (1163)
.+..+|+.||+.+..++||||||.+.+||.+||+||.+.+++|+|+|.+++-
T Consensus 1120 SHTQNIG~mIkthF~~sQFIVVSLKeGMF~NANvLFrtrF~DG~Stv~r~~~ 1171 (1174)
T KOG0933|consen 1120 SHTQNIGRMIKTHFTHSQFIVVSLKEGMFNNANVLFRTRFVDGVSTVQRTVT 1171 (1174)
T ss_pred hhhhhHHHHHHhhCCCCeEEEEEchhhccccchhhheeeeecCceeeeeecc
Confidence 9999999999999999999999999999999999999999999999998763
No 2
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=100.00 E-value=4.5e-123 Score=1190.01 Aligned_cols=1126 Identities=29% Similarity=0.437 Sum_probs=755.2
Q ss_pred CceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccC--CcceEE
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQA--GITKAT 78 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~--~~~~a~ 78 (1163)
|||++|++.|||||++++.+ +|+||||+||||||||||||+|||+||||+++.+.+|++++.|+||.|+.. +.+.|+
T Consensus 1 m~lk~i~l~gFKSF~~~~~i-~f~~~~t~IvGPNGSGKSNI~DAi~fVLG~~s~k~lRa~~~~DlIf~g~~~r~~~~~A~ 79 (1163)
T COG1196 1 MYLKRIELKGFKSFADPTEI-NFSPGFTAIVGPNGSGKSNIVDAIRFVLGEQSAKNLRASKMSDLIFAGSGNRKPANYAE 79 (1163)
T ss_pred CeeeEEEEECcccCCCCeee-ecCCCCeEEECCCCCchHHHHHHHHHHhCcchhhhhhccCCcceeeCCCCCCCCCCceE
Confidence 99999999999999997776 799999999999999999999999999999999999999999999977543 456799
Q ss_pred EEEEEecCCCCCCCCCCCCCCeEEEEEEEEeCCceeEEECCeecCHHHHHHHHHHcCCCCCCCceeeeCchhhHHhcCCc
Q 001073 79 VSIVFDNSDRSRSPLGYEDHPEITVTRQIVVGGRNKYLINGKLAQPSQVQTLFHSVQLNVNNPHFLIMQGRITKVLNMKP 158 (1163)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~~~~~~~in~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qg~v~~~~~~~p 158 (1163)
|+++|+|++.. .|..| ++|+|+|+++++|.|.|+|||+.|+++||.++|.++||++++| +||+||+|..|++|+|
T Consensus 80 V~l~fdN~d~~-~~~~~---~ei~v~Rri~r~g~S~Y~INg~~~~~~dI~~l~~~~gi~~~~~-~iV~QG~V~~i~~~kp 154 (1163)
T COG1196 80 VELTFDNSDNT-LPLEY---EEISVTRRIYRDGESEYYINGEKVRLKDIQDLLADSGIGKESY-SIVSQGKVEEIINAKP 154 (1163)
T ss_pred EEEEEeCCCCc-CCccc---ceEEEEEEEEEcCCcEEEECCcEeeHHHHHHHHHhcCCCCCCC-ceeecccHHHHHcCCH
Confidence 99999998854 56553 5999999999999999999999999999999999999999988 9999999999999999
Q ss_pred hHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001073 159 PEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINNLLDQEILPALEKLRKERTQYMQWANGNAELDRLRRFCIAYE 238 (1163)
Q Consensus 159 ~~~~~~~e~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (1163)
.+|+.+|++++|+..|+.+++++...|..+..++.++.+++. ++..+++.|+.+++.+.+|+.+..++..++..+++++
T Consensus 155 ~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~-el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~ 233 (1163)
T COG1196 155 EERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLE-ELEKQLEKLERQAEKAERYQELKAELRELELALLLAK 233 (1163)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998875 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHHHHHHHhhhh
Q 001073 239 YVQAEKIRDSAVGEVDRIKAKIAEIDCNTERTRLEIQEMEKQVSNLTAEKEASMGGEVKALSGKVDALSQDLVREVSVLN 318 (1163)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~ 318 (1163)
|.+...++..+.+.+..+...+..+...+.....++..++.++.++..++... ...+..+...+..+..++..+...+.
T Consensus 234 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~le~~~~~~~~~~~ 312 (1163)
T COG1196 234 LKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEEL-QEELLELKEEIEELEGEISLLRERLE 312 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888887776522 44444444445555555554444444
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhHHccc
Q 001073 319 NKDDTLRSEKENAEKIVRNIEDLKQAVEEKVSAVRKCEEGAADLKKKFEELS-----------KGLEENEKEYQGVLAGK 387 (1163)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~l~~l~~~~ 387 (1163)
............+..+...+...+..+.........+......+.......+ ..+..++..+..+...
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 391 (1163)
T COG1196 313 ELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAE- 391 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-
Confidence 4444444444444434444433333333321111111111111111111111 1112222222222111
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 001073 388 SSGNEEKCLEDQLADAKVTVGSAETELKQLKTKISHCEKELKEKTHQLMSKREEAVSVESELNARRKDVENVKLA---LE 464 (1163)
Q Consensus 388 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---l~ 464 (1163)
...+..++..++.++..+...+..+...+..+..++..+......++.+...+..++..+...+..+... ++
T Consensus 392 -----~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 466 (1163)
T COG1196 392 -----LAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELE 466 (1163)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223333333333333333333333333333333333333333333333333333333333333332221 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccC---------cccccCcCcccccccccccccCCchhHHHHHhhccCcc
Q 001073 465 SDRASEMAMAQKLKDEIRDLSAQLANVQFTYRD---------PVKNFDRAKVKGVVAKLIKVKDSSTMTALEVTAGGKLF 535 (1163)
Q Consensus 465 ~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~---------~~~~~~~~~~~G~v~~~i~v~~~~~~~aie~~l~~~l~ 535 (1163)
..+..++..+..+...+......+..+...... .... ..++++|||+++|+|++. |..||+.++|+.++
T Consensus 467 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~Gv~G~v~~li~v~~~-y~~Aie~alG~~l~ 544 (1163)
T COG1196 467 RELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALES-GLPGVYGPVAELIKVKEK-YETALEAALGNRLQ 544 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhc-cCCCccchHHHhcCcChH-HHHHHHHHcccccC
Confidence 222233333333333333332222211110000 0001 135799999999999995 99999999999999
Q ss_pred cEEEcCcHHHHHHHHccccC--CceEEeecCCCCCCCCChhhHHHHHhhcCCchhHhhhhccCCChHHHHHHHHhcCCeE
Q 001073 536 NVIVDTESTGKQLLQNGDLR--RRVTIIPLNKIQSHTVPPRVQQAAVRLVGKENAELALSLVGYSDELKTAMEYVFGSTF 613 (1163)
Q Consensus 536 ~vvv~~~~~a~~ll~~~~~~--~~~~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~l~d~i~~~~aie~al~~~l~niv 613 (1163)
+|||+|..+|..|+.+++.. |+++|+|++.+.+.+..+.. . .||++++++|+|+||+.|++|+.++|++++
T Consensus 545 ~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~~~~~~~------~-~~g~~~~a~dli~~d~~~~~~~~~~l~~t~ 617 (1163)
T COG1196 545 AVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSD------A-APGFLGLASDLIDFDPKYEPAVRFVLGDTL 617 (1163)
T ss_pred CeeeCChHHHHHHHHHHhhcCCCccccCchhhhccccccccc------c-ccchhHHHHHHhcCCHHHHHHHHHHhCCeE
Confidence 99999999999999887643 89999999998543321110 0 289999999999999999999999999999
Q ss_pred EecChHHHHHHHhhcCCCcceeecCCccccCCccccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 614 VCKSIDAAKEVAFSREIRTPSVTLEGDIFQPSGLLTGGSRRGGGDLLRQLHRLAAVESNLVIHQKRLSEIEAKIKELLPF 693 (1163)
Q Consensus 614 v~~~~~~a~~I~~~k~~~~~~vT~~G~~~~~~g~i~gg~~~~~~~~l~~~~~~~~l~~~l~~~~~~~~~i~~~i~~~~~~ 693 (1163)
||++.+.|..+++....++++||++|+++.|.|+|+||+....+. +.....+..+..++..+...+.....++......
T Consensus 618 Iv~~l~~A~~l~~~~~~~~riVTl~G~~~~~~G~~tGG~~~~~~~-~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~ 696 (1163)
T COG1196 618 VVDDLEQARRLARKLRIKYRIVTLDGDLVEPSGSITGGSRNKRSS-LAQKRELKELEEELAELEAQLEKLEEELKSLKNE 696 (1163)
T ss_pred EecCHHHHHHHHHhcCCCceEEecCCcEEeCCeeeecCCccccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988788999999999999999999995433333 2222245555566666666655555555444443
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhh--hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001073 694 QKKYMDLKAQLELKLYDLSLFQGRAE--QNEHHKLSEIVKKIEQELEEAKSSAKEKQLLYENSVSAVSVLEKSIKEHDNN 771 (1163)
Q Consensus 694 ~~~i~~l~~~~~~~~~~~~~~~g~~~--~~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~ 771 (1163)
...+ ...+......+..+..... ......+..+...+...+..+...+..+...+..+..++..+...+.....
T Consensus 697 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 772 (1163)
T COG1196 697 LRSL---EDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEE- 772 (1163)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3222 2222222333333332221 001111223333444444444444444444444444444444443322221
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 001073 772 REGRLKDLEKKIKAIKVQIQSASKDLKGHENERERLVMEHEAIVKEHASLENQLASVRMQINGLTSEVEEQKNKVAFTRT 851 (1163)
Q Consensus 772 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~l~~~~~~l~~~i~~~~~~~~~~~~ 851 (1163)
....+...+..+..........+..+..++.....++..+..++..+......+..++..+...+..+..++..+..
T Consensus 773 ---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~ 849 (1163)
T COG1196 773 ---ALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEE 849 (1163)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233333333332222222333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhh
Q 001073 852 NHDQAQSELNAIRLKMKECDSQISGILKEQQKLQDKLGEAKLERKRLENEVKRMEMEQKDCSTKVDKLIEKHAWIASEKQ 931 (1163)
Q Consensus 852 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 931 (1163)
.+..+...+..+...+..+..++..+...+..+......+...+..+...+..+...+......+..+......+.....
T Consensus 850 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 929 (1163)
T COG1196 850 ELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELP 929 (1163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333332222222111111111100
Q ss_pred hcCCCCCccccCCCChh-HHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 932 LFGRSGTDYDFESRDPY-KAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEK 1010 (1163)
Q Consensus 932 ~~~~~~~~~~~~~~~~~-~l~~~l~~l~~~~~~l~~~vn~~~~e~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~ 1010 (1163)
...... .++...+.. .++..+..++.++..++ +||+.|+++|+.+..+|.++..++.++..++..|...|..++..
T Consensus 930 ~~~~~~--~~~~~~~~~~~~~~~i~~le~~i~~lg-~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~ 1006 (1163)
T COG1196 930 ELEEEL--EEEYEDTLETELEREIERLEEEIEALG-PVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKE 1006 (1163)
T ss_pred HHHhhh--ccccccchhHHHHHHHHHHHHHHHhcc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 000111122 78999999999999998 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHhHHhhhcCCccccccCCCCC-cccccchhhhhccccccccccccChHHHHHHHHHHHHHHhcc
Q 001073 1011 KKETLKVTWVKVNKDFGSIFSTLLPGTMAKLEPPEGG-NFLDGLEVCVAFGGVWKQSLSELSGGQRSLLALSLILALLLF 1089 (1163)
Q Consensus 1011 ~~~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~ 1089 (1163)
+.+.|+.+|..|+.+|+.+|..|||||.|.|.+.+++ ++..|+.|.|.||+++.++++.||||||+++||||+||+|.+
T Consensus 1007 ~~~~f~~~f~~In~~F~~if~~L~~GG~a~L~l~~~dd~l~~Giei~a~ppgK~~~~l~~LSGGEKsLtAlAllFAi~~~ 1086 (1163)
T COG1196 1007 KRERFKETFDKINENFSEIFKELFGGGTAELELTEPDDPLTAGIEISARPPGKKLQSLSLLSGGEKSLTALALLFAIQKY 1086 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEeCCCCchhhcCcEEEEECCCCCccchhhcCCcHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999887754 477899999999999999999999999999999999999999
Q ss_pred CCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeeeeC-CceEEEEeeccc
Q 001073 1090 KPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKFVD-GVSTVQRTVATK 1160 (1163)
Q Consensus 1090 ~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~~~-g~S~v~~~~~~~ 1160 (1163)
.|+|||||||+|||||+.|+.+++++|+++++++||||||||+.||..||++|||||.+ |||+|+.+....
T Consensus 1087 ~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s~~sQFIvIThr~~~m~~ad~l~GVtm~~~GvS~vvsv~l~~ 1158 (1163)
T COG1196 1087 RPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVITHRKGTMEAADRLVGVTMQEKGVSKVVSVDLEE 1158 (1163)
T ss_pred CCCCeeeeccchhhccHHHHHHHHHHHHHhCcCCeEEEEEcChHHHHHHHHHeeeEeecCCceEEEEeeHhh
Confidence 99999999999999999999999999999999999999999999999999999999987 999999887543
No 3
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.4e-113 Score=961.34 Aligned_cols=1120 Identities=24% Similarity=0.391 Sum_probs=777.8
Q ss_pred CceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEE
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVS 80 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~ 80 (1163)
|||+.|.|.||+||.+.|+++||+|..|+|||.||||||||+.||+|||.+. ..++|......|+|.|..+...+|+|+
T Consensus 1 MyIk~ViI~GFrSYrd~tvv~~fSph~NvIVGrNGSGKSNFF~AIrFVLSDe-y~hLk~E~R~gLlHEGsG~~V~sA~VE 79 (1200)
T KOG0964|consen 1 MYIKQVIIKGFRSYRDETVVDPFSPHHNVIVGRNGSGKSNFFHAIRFVLSDE-YSHLKREERQGLLHEGSGAMVMSASVE 79 (1200)
T ss_pred CceEEeeeccchhhccccccCCCCCCcceEecCCCCCchhhHHHhhhhcccc-hhhcCHHHHhhhhhcCCCcceEEEEEE
Confidence 9999999999999999999999999999999999999999999999999854 356777777899998765666799999
Q ss_pred EEEecCCCCCCCCCCCCCCeEEEEEEEEeCCceeEEECCeecCHHHHHHHHHHcCCCCCCCceeeeCchhhHHhcCCchH
Q 001073 81 IVFDNSDRSRSPLGYEDHPEITVTRQIVVGGRNKYLINGKLAQPSQVQTLFHSVQLNVNNPHFLIMQGRITKVLNMKPPE 160 (1163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~~~~~~~in~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qg~v~~~~~~~p~~ 160 (1163)
|+|+|++.. .|.+ ..+|+++|+|.. .+..|++|++.|+..+|.++|.+.|+...|||+|||||+|.++++++..+
T Consensus 80 IvF~nsdnr-~~~~---k~Ev~lrRtVGl-KKDeY~lD~k~Vtk~evvnLLESAGFSrsNPYyIV~QGkI~~La~akD~e 154 (1200)
T KOG0964|consen 80 IVFDNSDNR-LPRG---KSEVSLRRTVGL-KKDEYFLDNKMVTKGEVVNLLESAGFSRSNPYYIVPQGKINELANAKDSE 154 (1200)
T ss_pred EEEeCcccc-cCCC---CCeEEEEEeecc-cchhhhcccccccHHHHHHHHHhcCcccCCCceEeechhhHHhhcCCcHH
Confidence 999998765 4533 579999999975 35789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001073 161 ILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINNLLDQEILPALEKLRKERTQYMQWANGNAELDRLRRFCIAYEYV 240 (1163)
Q Consensus 161 ~~~~~e~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 240 (1163)
|+.++.+++|+..|+.++++.++.++.+.+....|+..+. .|..+|..|+.+++++..|+++......++. .
T Consensus 155 RL~LLkeVaGtrvYeerreeSlkim~ET~qK~ekI~ell~-yieerLreLEeEKeeL~~Yqkldk~rr~lEY-------t 226 (1200)
T KOG0964|consen 155 RLELLKEVAGTRVYEERREESLKIMEETKQKREKINELLK-YIEERLRELEEEKEELEKYQKLDKERRSLEY-------T 226 (1200)
T ss_pred HHHHHHHhcccchhHHhHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHhHhhhhh-------h
Confidence 9999999999999999999999999999999999999885 9999999999999999999998776665554 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHHHHHH
Q 001073 241 QAEKIRDSAVGEVDRIKAKIA-------EIDCNTERTRLEIQEMEKQVSNLTAEKEASMGGEVKALSGKVDALSQDLVRE 313 (1163)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l 313 (1163)
.+..++.++..++..+..... .....+.....++..+..++.+++..+. .+..+.+.+..+...+......+
T Consensus 227 iYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~-~l~~ekeq~~a~~t~~~k~kt~l 305 (1200)
T KOG0964|consen 227 IYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLT-NLREEKEQLKARETKISKKKTKL 305 (1200)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhh
Confidence 444555555555555444333 3333344444444445555544444432 22233334444444444555566
Q ss_pred HhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHcccCC----
Q 001073 314 VSVLNNKDDTLRSEKENAEKIVRNIEDLKQAVEEKVSAVRKCEEGAADLKKKFEELSKGLEENEKEYQGVLAGKSS---- 389 (1163)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~---- 389 (1163)
+-++..++.++....+........+..+...+.+.+.++..+...++.+..+-..+...+..++++...+-.....
T Consensus 306 el~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqF 385 (1200)
T KOG0964|consen 306 ELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQF 385 (1200)
T ss_pred hhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 6677777777777777777777888888888888889999999999999888888888888888887777654332
Q ss_pred ---cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Q 001073 390 ---GNEEKCLEDQLADAKVTVGSAETELKQLKTKISHCEKELKEKTHQLMSKREEAVSVESELNARR-------KDVENV 459 (1163)
Q Consensus 390 ---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~l 459 (1163)
.....++..++..+..-+.+.......+..++..++..+.....++.++...+.+...++..+. ++++++
T Consensus 386 ssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del 465 (1200)
T KOG0964|consen 386 SSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDEL 465 (1200)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 1224678888888888887777777777777777777766666666666555554444444443 333333
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--cccC------cccccCcCcccccccccccccCCchhHHHHH
Q 001073 460 KL---ALESDRASEMAMAQKLKDEIRDLSAQLANVQF--TYRD------PVKNFDRAKVKGVVAKLIKVKDSSTMTALEV 528 (1163)
Q Consensus 460 ~~---~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~--~~~~------~~~~~~~~~~~G~v~~~i~v~~~~~~~aie~ 528 (1163)
.. .+.++...++..+..+...+...+..+...-. .+++ ....+...+++|||++++.||+. |.+|+|+
T Consensus 466 ~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~v~~~-f~tavEv 544 (1200)
T KOG0964|consen 466 QDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMNRSVANGIDSVRKIKEELKPNGVFGTVYELIKVPNK-FKTAVEV 544 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHhcccccceehhhhhcCCHH-HHhHHhh
Confidence 33 23355556666666666666665555443211 1111 11245556899999999999999 9999999
Q ss_pred hhccCcccEEEcCcHHHHHHHHccccC--CceEEeecCCCCCCCCChhhHHHHHhhcCCchhHhhhhccCCChHHHHHHH
Q 001073 529 TAGGKLFNVIVDTESTGKQLLQNGDLR--RRVTIIPLNKIQSHTVPPRVQQAAVRLVGKENAELALSLVGYSDELKTAME 606 (1163)
Q Consensus 529 ~l~~~l~~vvv~~~~~a~~ll~~~~~~--~~~~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~l~d~i~~~~aie~al~ 606 (1163)
..|+.||++||+|+++|..+|+..... |++||+||+.|.+..+..| ..+.+.++++.++|++.|++||+
T Consensus 545 taGNsLF~iVVdndevATkIl~~~n~m~~GrVTF~PLNrl~~r~v~yp---------~~sdaiPli~kl~y~p~fdka~k 615 (1200)
T KOG0964|consen 545 TAGNSLFNIVVDNDEVATKILRKLNKMKGGRVTFMPLNRLKARDVEYP---------KDSDAIPLISKLRYEPQFDKALK 615 (1200)
T ss_pred hcccceEEEEecccHHHHHHHHHHHhccCCeeEEeecccCchhhccCC---------CCCCccchHHHhCcchhhHHHHH
Confidence 999999999999999999998754432 7999999999866444321 12445679999999999999999
Q ss_pred HhcCCeEEecChHHHHHHHhhcCCCcceeecCCccccCCccccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 607 YVFGSTFVCKSIDAAKEVAFSREIRTPSVTLEGDIFQPSGLLTGGSRRGGGDLLRQLHRLAAVESNLVIHQKRLSEIEAK 686 (1163)
Q Consensus 607 ~~l~nivv~~~~~~a~~I~~~k~~~~~~vT~~G~~~~~~g~i~gg~~~~~~~~l~~~~~~~~l~~~l~~~~~~~~~i~~~ 686 (1163)
++||+++||.+++.|...+ +...+.|||++|+.....|.|+||+.+...+.+.....+.....++.++++.+..+...
T Consensus 616 ~Vfgktivcrdl~qa~~~a--k~~~ln~ITl~GDqvskkG~lTgGy~D~krsrLe~~k~~~~~~~~~~~l~~~L~~~r~~ 693 (1200)
T KOG0964|consen 616 HVFGKTIVCRDLEQALRLA--KKHELNCITLSGDQVSKKGVLTGGYEDQKRSRLELLKNVNESRSELKELQESLDEVRNE 693 (1200)
T ss_pred HHhCceEEeccHHHHHHHH--HhcCCCeEEeccceecccCCccccchhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998776 45678999999999999999999998654445554444445555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 687 IKELLPFQKKYMDLKAQLELKLYDLSLFQGRAEQNEHHKLSEIVKKIEQELEEAKSSAKEKQLLYENSVSAVSVLEKSIK 766 (1163)
Q Consensus 687 i~~~~~~~~~i~~l~~~~~~~~~~~~~~~g~~~~~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~i~ 766 (1163)
|......+..+. ++++...+.++.+.... ..++.++..+..+...++..+......+..+...+..+....+
T Consensus 694 i~~~~~~i~q~~---~~~qk~e~~~~~~~~~~-----~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~ 765 (1200)
T KOG0964|consen 694 IEDIDQKIDQLN---NNMQKVENDRNAFKREH-----EKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSN 765 (1200)
T ss_pred HHHHHHHHHHHH---HHHHHHHhHHHHHHHHH-----HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 544444333222 22222233333332221 1223333333333333333333333333333333333332222
Q ss_pred HHhhhhhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhHHH
Q 001073 767 EHDNNREGRL-----KDLEKKIKAIKVQIQSASKDLKGHENERERLVMEHEAIVKEHAS-LENQLASVRMQINGLTSEVE 840 (1163)
Q Consensus 767 ~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~l~~l~~~~~~l~~~i~ 840 (1163)
.+.+++...+ ..-...+..+..++..+..++..+..+.-++......+...+.. +..++..+..++.++.. .
T Consensus 766 ~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r~~~l~~ei~~~~d--~ 843 (1200)
T KOG0964|consen 766 YFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYKRVNELEQEIGDLND--S 843 (1200)
T ss_pred hHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhhccc--c
Confidence 2211111111 11122223333333333333333333333333333333333332 33444444444443321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 841 EQKNKVAFTRTNHDQAQSELNAIRLKMKECDSQISGILKEQQKLQDKLGEAKLERKRLENEVKRMEMEQKDCSTKVDKLI 920 (1163)
Q Consensus 841 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 920 (1163)
.....+...+.++.....+++....++..+...+......+..+...++.+..--...... -....+..........|.
T Consensus 844 ~~~~el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek~~~~~-~~~dKe~Ek~~~rk~~Ll 922 (1200)
T KOG0964|consen 844 SRRSELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEKEKKDN-INFDKELEKLVRRKHMLL 922 (1200)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHH
Confidence 1223333334444444444444444444444444444444333333333222111111000 000111111111111111
Q ss_pred HHhHhHhHhhhhcCCCC--CccccCCCChhHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 921 EKHAWIASEKQLFGRSG--TDYDFESRDPYKAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKS 998 (1163)
Q Consensus 921 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~vn~~~~e~~~~~~~~~~~l~~~~~~l~~~~~ 998 (1163)
..-++..+.....+..+ ....|.+.++.++..++..+..++..++ .||..|.++|..+.++...|..+..++..+..
T Consensus 923 ~KreE~~ekIr~lG~Lp~daf~ky~~~~~~el~kkL~~~neelk~ys-~VNKkAldQf~nfseQre~L~~R~eELd~s~~ 1001 (1200)
T KOG0964|consen 923 KKREECCEKIRELGVLPEDAFEKYQDKKSKELMKKLHRCNEELKGYS-NVNKKALDQFVNFSEQRESLKKRQEELDRSKD 1001 (1200)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHhccCCHHHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 11122233332222211 1123566788899999999999999998 89999999999998888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHhhhcCCccccccCC--C--------CC-------------cccccchh
Q 001073 999 KIKKVIEELDEKKKETLKVTWVKVNKDFGSIFSTLLPGTMAKLEPP--E--------GG-------------NFLDGLEV 1055 (1163)
Q Consensus 999 ~l~~~i~~l~~~~~~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~~~--~--------~~-------------~~~~~~~~ 1055 (1163)
+|...|..|+.+..+....||..|..+|..+|..|+|+|.|.+.+. + +. +...||.|
T Consensus 1002 sI~eLi~vLdqrK~eai~~TFkqV~knFsevF~~LVp~G~a~iim~k~d~~~d~~e~d~~~~~~s~~~~~sv~~ytGIsI 1081 (1200)
T KOG0964|consen 1002 SILELITVLDQRKYEAIDLTFKQVKKNFSEVFSRLVPGGTALIIMRKRDNANDHDEDDGDMDGESNEGKDSVEMYTGISI 1081 (1200)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCCceeehhhccccccccccccccccccccccccchhhccceeE
Confidence 9999999999999999999999999999999999999999954321 0 00 12257999
Q ss_pred hhhccccc--cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcc
Q 001073 1056 CVAFGGVW--KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEG 1133 (1163)
Q Consensus 1056 ~~~~~~~~--~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~ 1133 (1163)
.|+|.++. ...+.+||||||++||||++||+|+|.|+|||+|||+||+||++++.+|++||+++++++|||++|+||+
T Consensus 1082 ~VSFnskq~E~~~m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~aQFI~TTFRpE 1161 (1200)
T KOG0964|consen 1082 KVSFNSKQGETLEMEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDSAQFITTTFRPE 1161 (1200)
T ss_pred EEEeecCccHHHHHHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhccceEeecccHH
Confidence 99998643 3578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccceeeeeeeCCceEEEEeecc
Q 001073 1134 MFNNANVLFRTKFVDGVSTVQRTVAT 1159 (1163)
Q Consensus 1134 ~~~~a~~~~gv~~~~g~S~v~~~~~~ 1159 (1163)
|+..||.+|||.+.|.||+|..+++-
T Consensus 1162 ll~vAdKfygV~f~nKvS~V~~It~e 1187 (1200)
T KOG0964|consen 1162 LLSVADKFYGVKFENKVSTVDEITRE 1187 (1200)
T ss_pred HHHHHHhhhceeeccccccceeeeHH
Confidence 99999999999999999999999874
No 4
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=7.3e-107 Score=928.99 Aligned_cols=1126 Identities=21% Similarity=0.327 Sum_probs=666.8
Q ss_pred CceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhcc-CCcceEEE
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQ-AGITKATV 79 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~-~~~~~a~v 79 (1163)
|+|..|.+.|||||+|.++++||||.|++|||||||||||++|||.||||..+ ..+|.+++++|||++.. +...+|+|
T Consensus 84 L~I~~i~~~NFKSYaG~~ilGPFHksFtaIvGPNGSGKSNVIDsmLFVFGfRA-~kiR~~klS~LIh~S~~~~~l~SCsV 162 (1293)
T KOG0996|consen 84 LMITEIVVENFKSYAGKQILGPFHKSFTAIVGPNGSGKSNVIDSMLFVFGFRA-SKIRSKKLSALIHKSDGHPNLQSCSV 162 (1293)
T ss_pred eeehhhhhhhhhhhcCceeecCCCCCceeeECCCCCCchHHHHHHHHHhhhhH-hHHhHHHHHHHHhccCCCCCCcceeE
Confidence 67999999999999999999999999999999999999999999999999876 67899999999996542 33457999
Q ss_pred EEEEecCCCCCCCCCC---CCCCeEEEEEEEEeCCceeEEECCeecCHHHHHHHHHHcCCCCCCCceeeeCchhhHHhcC
Q 001073 80 SIVFDNSDRSRSPLGY---EDHPEITVTRQIVVGGRNKYLINGKLAQPSQVQTLFHSVQLNVNNPHFLIMQGRITKVLNM 156 (1163)
Q Consensus 80 ~~~~~~~~~~~~~~~~---~~~~~~~i~r~i~~~~~~~~~in~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qg~v~~~~~~ 156 (1163)
+|+|+-... .|.++ .....++|+|+.+++++|.|+|||+.++.++|..+|...||++++..|+|.||.|.+||+|
T Consensus 163 ~vhFq~iiD--~~~~~~E~vp~s~~~ItRtA~~~NsSkY~Ingk~as~~~V~~lLk~~gIDleHNRFLILQGEVE~IA~M 240 (1293)
T KOG0996|consen 163 EVHFQKIID--KPGGTYEVVPDSEFTITRTAFRDNSSKYYINGKEASFKDVTKLLKSHGIDLEHNRFLILQGEVEQIAMM 240 (1293)
T ss_pred EEeeeeeec--cCCCceeecCCCeeEEEehhhhCCCceEeECCccccHHHHHHHHHhcCCCCccceeeeehhhHHHHHhc
Confidence 999984311 11111 1246799999999999999999999999999999999999999999999999999999999
Q ss_pred Cc-------hHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001073 157 KP-------PEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINNLLDQEILPALEKLRKERTQYMQWANGNAELDR 229 (1163)
Q Consensus 157 ~p-------~~~~~~~e~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~ 229 (1163)
+| ..+++++|+++|+..|....++....+.............+. -..+....|+.-+..+..|.....++-.
T Consensus 241 KPk~~~e~d~GmLEYLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~~~~k-~~e~ek~~lE~~k~~al~fL~kenel~~ 319 (1293)
T KOG0996|consen 241 KPKAQTENDEGMLEYLEDIIGTNRYKEPIEELMRRVERLNEDRSEKENRVK-LVEKEKKALEGPKNEALEFLKKENELFR 319 (1293)
T ss_pred CCCCCCCCcchHHHHHHHHhcccccchhHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 99 479999999999999999888877777766655555444442 4567788999999999999999888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Q 001073 230 LRRFCIAYEYVQAEKIRDSAVGEVDRIKAKIAEIDCNTERTRLEIQEMEKQVSNLTAEKEASMGGEVKALSGKVDALSQD 309 (1163)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (1163)
.+..+.-+.+.....++....+++..+...+.+..........+..+..+.+.....++...++..+..+..+...+..+
T Consensus 320 ~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~ 399 (1293)
T KOG0996|consen 320 KKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLERE 399 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666666667777777777777777777766666533333333222222211122212222333333344444433
Q ss_pred HHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHcccCC
Q 001073 310 LVREVSVLNNKDDTLRSEKENAEKIVRNIEDLKQAVEEKVSAVRKCEEGAADLKKKFEELSKGLEENEKEYQGVLAGKSS 389 (1163)
Q Consensus 310 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~ 389 (1163)
-.+.+..+..+...++.+...++....++.+++.........+..+..++..+.......+.++.+....+..-...+..
T Consensus 400 ~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~ 479 (1293)
T KOG0996|consen 400 DVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIRE 479 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 33333333333333333333333333333333333333333333333333333333222222222222222221111111
Q ss_pred -----cchh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 390 -----GNEE-------KCLEDQLADAKVTVGSAETELKQLKTKISHCEKELKEKTHQLMSKREEAVSVESELNARRKDVE 457 (1163)
Q Consensus 390 -----~~~~-------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 457 (1163)
+..+ .....++.-+++++..+..........+..++..+........+....+..+...+..+..++.
T Consensus 480 e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~ 559 (1293)
T KOG0996|consen 480 EIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELK 559 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 0001 1112222222222222222222223333333333333333333333333333333333333333
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhccccc------ccCcccccCcCcccccccccccccCCchhHHHHH
Q 001073 458 NVKLALE---SDRASEMAMAQKLKDEIRDLSAQLANVQFT------YRDPVKNFDRAKVKGVVAKLIKVKDSSTMTALEV 528 (1163)
Q Consensus 458 ~l~~~l~---~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~------~~~~~~~~~~~~~~G~v~~~i~v~~~~~~~aie~ 528 (1163)
+...++. .+...+...+..+.+++..+.+.+...... +......=..++++|++|||..+++. |..||.+
T Consensus 560 ~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id~k-YDvAIsT 638 (1293)
T KOG0996|consen 560 EKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKESGRIPGFYGRLGDLGAIDEK-YDVAIST 638 (1293)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCCCCccccccccccccchH-HHHHHHH
Confidence 2222211 111222222222222222222222111000 00000011235799999999999998 9999998
Q ss_pred hhccCcccEEEcCcHHHHHHHHccccC--CceEEeecCCCCCCCCChhhHHHHHhhcCCchhHhhhhccCCC-hHHHHHH
Q 001073 529 TAGGKLFNVIVDTESTGKQLLQNGDLR--RRVTIIPLNKIQSHTVPPRVQQAAVRLVGKENAELALSLVGYS-DELKTAM 605 (1163)
Q Consensus 529 ~l~~~l~~vvv~~~~~a~~ll~~~~~~--~~~~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~l~d~i~~~-~aie~al 605 (1163)
+++.|+++||++.++|+.|+.+++.. |+.||++|+.+......-. .+..|..+++|+|+|+|. +.|.+||
T Consensus 639 -ac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LDki~~~~~~l~------~i~tpenvPRLfDLv~~~d~~~r~aF 711 (1293)
T KOG0996|consen 639 -ACARLDYIVVDTIETAQECINFLKKNNLGRATFIILDKIKDHQKKLA------PITTPENVPRLFDLVKCKDEKFRPAF 711 (1293)
T ss_pred -hccccceEEeccHHHHHHHHHHHHHcCCCceeEEehHhhhhhhhccC------CCCCCCCcchHhhhhccCCHHHHHHH
Confidence 56779999999999999999886543 8999999998852211110 011378899999999996 9999999
Q ss_pred HHhcCCeEEecChHHHHHHHhhcCCCcceeecCCccccCCccccCCCCCCCC-----Ch-hH--HHHHHHHHHHHHHHHH
Q 001073 606 EYVFGSTFVCKSIDAAKEVAFSREIRTPSVTLEGDIFQPSGLLTGGSRRGGG-----DL-LR--QLHRLAAVESNLVIHQ 677 (1163)
Q Consensus 606 ~~~l~nivv~~~~~~a~~I~~~k~~~~~~vT~~G~~~~~~g~i~gg~~~~~~-----~~-l~--~~~~~~~l~~~l~~~~ 677 (1163)
++++++++||++++.|.+|+|.+..++++||++|.+|.++|+|+||+..... .. .. ....+..++..+....
T Consensus 712 YfaLrdtLV~d~LeQAtRiaygk~rr~RVvTL~G~lIe~SGtmtGGG~~v~~g~mg~~~~~t~~s~~~v~~le~~l~~~~ 791 (1293)
T KOG0996|consen 712 YFALRDTLVADNLEQATRIAYGKDRRWRVVTLDGSLIEKSGTMTGGGKKVKGGRMGTSIRVTGVSKESVEKLERALSKMS 791 (1293)
T ss_pred HHHHhhhhhhcCHHHHHHHhhcCCCceEEEEecceeecccccccCCCCcCCCCCCCCccccCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887799999999999999999998643111 11 11 1123444555555555
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH---HH
Q 001073 678 KRLSEIEAKIKELLPFQ----KKYMDLKAQLELKLYDLSLFQGRAEQNEHHKLSEIVKKIEQELEEAKSSAKEKQ---LL 750 (1163)
Q Consensus 678 ~~~~~i~~~i~~~~~~~----~~i~~l~~~~~~~~~~~~~~~g~~~~~~~~~l~~~i~~l~~~l~~l~~~~~~l~---~~ 750 (1163)
..+..+.+.+..+.+.. .++..+...++...... ..+...+..++..+.+++....... ..
T Consensus 792 ~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~------------k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~ 859 (1293)
T KOG0996|consen 792 DKARQHQEQLHELEERVRKLRERIPELENRLEKLTASV------------KRLAELIEYLESQIAELEAAVLKKVVDKKR 859 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHhhhccCcHHH
Confidence 55555544433322221 11222222221111111 0111122222222222222211100 01
Q ss_pred HHHHHHHHHHHHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 751 YENSVSAVSVLEKSIKEHDNN--REGRLKDLEKKIKAIKVQIQSASKDLKGHENERERLVMEHEAIVKEHASLENQLASV 828 (1163)
Q Consensus 751 l~~~~~~~~~l~~~i~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~l 828 (1163)
+..++..+..++.++.++.+. ...++..++..+..+-...-+.+ ..++..+..+++.+..++..+...+...
T Consensus 860 l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~q------k~kv~~~~~~~~~l~~~i~k~~~~i~~s 933 (1293)
T KOG0996|consen 860 LKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQ------KDKVEKINEQLDKLEADIAKLTVAIKTS 933 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHh------HHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence 111122222222222111100 01122222222222211111100 0111111111122222222222111111
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 829 RMQINGLTSEVEEQKNKVAFTRTNHDQAQSELNAIRLKMKECDSQISGILKEQQKLQDKLGEAKLERKRLENEVKRMEME 908 (1163)
Q Consensus 829 ~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 908 (1163)
...+...+..+..+...+.....+++.+...+..+.....+++.++....+-+.++...+..+...+..+.+....+...
T Consensus 934 ~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~ 1013 (1293)
T KOG0996|consen 934 DRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAE 1013 (1293)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11222222222222222222222222222222222222222222222222222222222222222222222222222221
Q ss_pred HHHHHHHHHHHHHHhHhHh-------Hhhhh---cCC----CCCcc---ccCC----CChhHHHHHHHHHHHHHHhhhhh
Q 001073 909 QKDCSTKVDKLIEKHAWIA-------SEKQL---FGR----SGTDY---DFES----RDPYKAREELEKLQAEQSGLEKR 967 (1163)
Q Consensus 909 ~~~~~~~~~~l~~~~~~~~-------~~~~~---~~~----~~~~~---~~~~----~~~~~l~~~l~~l~~~~~~l~~~ 967 (1163)
.-.+..+++.....+..+. ..... ... +.... .+.. +....+-..+.-++.+.+.++ .
T Consensus 1014 rId~~~K~e~~~~~l~e~~~~~~~~~k~~~~l~~~~~tE~~~~~~~~~~~~Eeleae~~~~~i~e~i~~lE~~~~~l~-~ 1092 (1293)
T KOG0996|consen 1014 RIDIENKLEAINGELNEIESKIKQPEKELKKLSLCNMTETRPQIELDVESPEELEAEMLEDNINEKIALLEKRVEELR-E 1092 (1293)
T ss_pred hccHHHHHHHHHHHHHHHHhhhhhHHHhhCccccccchhhccccccccCChHHHHhhhcHhhHHHHHHHHHHHHHHhc-C
Confidence 1111111111111111110 00000 000 00000 0111 112234556778888899987 7
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHhhhcCCccccccCCCC-
Q 001073 968 VNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLKVTWVKVNKDFGSIFSTLLPGTMAKLEPPEG- 1046 (1163)
Q Consensus 968 vn~~~~e~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~~~~~- 1046 (1163)
+|..++..|......|..--..++............++.+...+.+.|+..|.-|+.++..+|++++.||.|.|.+++.
T Consensus 1093 vd~~~i~eY~~k~~~y~~rv~~l~~~t~kr~~~re~l~~Lrk~RldEFm~gf~~Is~kLkemYQmIT~GGdAeLElVDsl 1172 (1293)
T KOG0996|consen 1093 VDLGVIAEYAKKVELYLKRVAELEKFTQKRDEHREKLEELRKRRLDEFMAGFNIISMKLKEMYQMITLGGDAELELVDSL 1172 (1293)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEeeccC
Confidence 9999999999999999888888899999999999999999999999999999999999999999999999999988765
Q ss_pred CcccccchhhhhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEE
Q 001073 1047 GNFLDGLEVCVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFI 1126 (1163)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i 1126 (1163)
++|..||.++|+||.+.-+.+..|||||||+++|||+||||++.|+||||||||||+||..|+-.|+.+|++..+++|||
T Consensus 1173 DPFseGV~FSVrPpKKSWK~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErTkNAQFI 1252 (1293)
T KOG0996|consen 1173 DPFSEGVMFSVRPPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFI 1252 (1293)
T ss_pred CCcccCceEEeeCchhhhhhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhccCCeEE
Confidence 46889999999999774467999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcchhhhccceeeeeeeCCceEEEEee
Q 001073 1127 VVSLKEGMFNNANVLFRTKFVDGVSTVQRTV 1157 (1163)
Q Consensus 1127 ~it~~~~~~~~a~~~~gv~~~~g~S~v~~~~ 1157 (1163)
|||+|.+||+.|++|.||+-.+|+++-+-|.
T Consensus 1253 IISLRnnMFELa~rLvGIYKtdn~Tksvti~ 1283 (1293)
T KOG0996|consen 1253 IISLRNNMFELANRLVGIYKTDNCTKSVTIN 1283 (1293)
T ss_pred EEEehhhHHHHHhhheeeEeecCccceeEec
Confidence 9999999999999999999999999877665
No 5
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.7e-100 Score=871.81 Aligned_cols=1088 Identities=21% Similarity=0.328 Sum_probs=676.5
Q ss_pred CceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEE
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVS 80 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~ 80 (1163)
|++..|+|.|||||.+.++++||. .||+|||||||||||+||||.||||.++ ..+|++.+.|||+ + ....+.|+
T Consensus 2 g~L~~lEieNFKSYkGh~~iGPF~-~FTaIIGPNGSGKSNlMDAISFVLGeks-s~LR~~~lkdLIy-g---~~i~~~v~ 75 (1141)
T KOG0018|consen 2 GRLLTLEIENFKSYKGHQVIGPFD-RFTAIIGPNGSGKSNLMDAISFVLGEKS-SHLRVSHLKDLIY-G---KPIRKPVT 75 (1141)
T ss_pred CceeeeehhccccccCceeecCch-hceeeeCCCCCchHHHHHHHHHHhcCCC-cccccchHHHHhc-C---CccCCchh
Confidence 689999999999999999998887 8999999999999999999999999877 6789999999998 2 22344555
Q ss_pred EEEecCCCCCCCCCCCCCCeEEEEEEEEeCCceeEEECCeecCHHHHHHHHHHcCCCCCCCceeeeCchhhHHhcCCchH
Q 001073 81 IVFDNSDRSRSPLGYEDHPEITVTRQIVVGGRNKYLINGKLAQPSQVQTLFHSVQLNVNNPHFLIMQGRITKVLNMKPPE 160 (1163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~~~~~~~in~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qg~v~~~~~~~p~~ 160 (1163)
+.|.-++ .....++|.|+ +|.|+|+|||+.|+..++..-|...||-+...+|+|.||+|..|++++|.+
T Consensus 76 l~Y~~~d----------g~~~~F~R~I~-~G~seY~IDne~VT~eeY~~eLekinIlVkARNFLVFQGdVE~IA~k~PkE 144 (1141)
T KOG0018|consen 76 LKYEEGD----------GETRRFTRAIN-GGTSEYMIDNEIVTREEYLEELEKINILVKARNFLVFQGDVEKIAGKNPKE 144 (1141)
T ss_pred heeecCC----------chhhhhhhhhc-CCceeEEEcceeccHHHHHHHHhhcceeeeeeeEEEecChHHHHhccCHHH
Confidence 6665332 23456889898 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001073 161 ILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINNLLDQEILPALEKLRKERTQYMQWANGNAELDRLRRFCIAYEYV 240 (1163)
Q Consensus 161 ~~~~~e~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 240 (1163)
+-.+||+++|+-.|+..+++....+..++......-... ..|..+....+.++..+++|+.+.++...+......|+.+
T Consensus 145 lt~LFEEISgSiElK~EYeelK~E~~kAE~~t~~~~~kk-k~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLf 223 (1141)
T KOG0018|consen 145 LTALFEEISGSIELKPEYEELKYEMAKAEETTTGNYKKK-KSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELF 223 (1141)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHhhhh-hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998888777776666666555444332222 3567777788888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHHHHHHHhhhhhh
Q 001073 241 QAEKIRDSAVGEVDRIKAKIAEIDCNTERTRLEIQEMEKQVSNLTAEKEASMGGEVKALSGKVDALSQDLVREVSVLNNK 320 (1163)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~ 320 (1163)
+.+..+..+..++..+...+..+.........++.....+......++. .+...+...+..+.+ ..++.+........
T Consensus 224 hvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~-~~Dk~i~~ke~~l~e-rp~li~~ke~~~~~ 301 (1141)
T KOG0018|consen 224 HVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQ-KVDKKISEKEEKLAE-RPELIKVKENASHL 301 (1141)
T ss_pred hhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhh-hhHHhhcchhhccc
Confidence 9999999999999999998888888888887777777765555544432 223333333333333 22333333333333
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHhHHcccCC--cc
Q 001073 321 DDTLRSEKENAEKIVRNIEDLKQAVEEKVSAVRKCEEGAADLKKKFEELSKG----LEENEK---EYQGVLAGKSS--GN 391 (1163)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~---~l~~l~~~~~~--~~ 391 (1163)
..++......+.............++....++..+........+++....+. +.-... ++..+..+... ..
T Consensus 302 k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~ 381 (1141)
T KOG0018|consen 302 KKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEALE 381 (1141)
T ss_pred hhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHH
Confidence 3333333333333333333333333333333333333333333333222220 000000 00001000000 00
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 392 EEKCLEDQLADAKVTVGSAETELKQLKTKISHCEKELKEKTHQLMSKREEAVSVESELNARRKDVENVKLALESDRASEM 471 (1163)
Q Consensus 392 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~ 471 (1163)
.+..+...+..-+..+....+....+..++..+...+.++..+...+...+..+.+....+...+..+.. ......
T Consensus 382 el~~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~----~~~~~~ 457 (1141)
T KOG0018|consen 382 ELEVLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLES----LVSSAE 457 (1141)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHH----HHhhhh
Confidence 0111111122222222222222333333333333333333333333333333333333332222222222 111222
Q ss_pred HHHHHHHHHHHHHHHHhhccccccc-------------CcccccCcCcccccccccccccCCchhHHHHHhhccCcccEE
Q 001073 472 AMAQKLKDEIRDLSAQLANVQFTYR-------------DPVKNFDRAKVKGVVAKLIKVKDSSTMTALEVTAGGKLFNVI 538 (1163)
Q Consensus 472 ~~~~~~~~~l~~l~~~~~~~~~~~~-------------~~~~~~~~~~~~G~v~~~i~v~~~~~~~aie~~l~~~l~~vv 538 (1163)
.+...+..++.+...++.......+ ..+++| ++|+|+|.|+|+++..+|..|+..++|.++.+||
T Consensus 458 ~~~~e~n~eL~~~~~ql~das~dr~e~sR~~~~~eave~lKr~f--Pgv~GrviDLc~pt~kkyeiAvt~~Lgk~~daIi 535 (1141)
T KOG0018|consen 458 EEPYELNEELVEVLDQLLDASADRHEGSRRSRKQEAVEALKRLF--PGVYGRVIDLCQPTQKKYEIAVTVVLGKNMDAII 535 (1141)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHhC--CCccchhhhcccccHHHHHHHHHHHHhcccceEE
Confidence 2222223333333322222111111 111223 4799999999999988899999999999999999
Q ss_pred EcCcHHHHHHHHccccC--CceEEeecCCCCCCCCChhhHHHHHhhcCCchhHhhhhccCCChHHHHHHHHhcCCeEEec
Q 001073 539 VDTESTGKQLLQNGDLR--RRVTIIPLNKIQSHTVPPRVQQAAVRLVGKENAELALSLVGYSDELKTAMEYVFGSTFVCK 616 (1163)
Q Consensus 539 v~~~~~a~~ll~~~~~~--~~~~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~l~d~i~~~~aie~al~~~l~nivv~~ 616 (1163)
|++..+|+.||.+.+.. +..||+|++.|.+.++... +..||.+.+++|+|.|++.++.|+.|+|||.+||+
T Consensus 536 Vdte~ta~~CI~ylKeqr~~~~TFlPld~i~v~~~~e~-------lr~~~g~rlv~Dvi~ye~e~eka~~~a~gn~Lvcd 608 (1141)
T KOG0018|consen 536 VDTEATARDCIQYLKEQRLEPMTFLPLDSIRVKPVNEK-------LRELGGVRLVIDVINYEPEYEKAVQFACGNALVCD 608 (1141)
T ss_pred eccHHHHHHHHHHHHHhccCCccccchhhhhcCccccc-------ccCcCCeEEEEEecCCCHHHHHHHHHHhccceecC
Confidence 99999999999987643 5789999999865444321 11267799999999999999999999999999999
Q ss_pred ChHHHHHHHhhcCCCcceeecCCccccCCccccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 617 SIDAAKEVAFSREIRTPSVTLEGDIFQPSGLLTGGSRRGGGDLLRQLHRLAAVESNLVIHQKRLSEIEAKIKELLPFQKK 696 (1163)
Q Consensus 617 ~~~~a~~I~~~k~~~~~~vT~~G~~~~~~g~i~gg~~~~~~~~l~~~~~~~~l~~~l~~~~~~~~~i~~~i~~~~~~~~~ 696 (1163)
+.+.|+.++|....++..||+||.+|+..|.|+||+.+..+. ...+..+...-..+..++.++...-.....-...
T Consensus 609 s~e~Ar~l~y~~~~r~k~valdGtl~~ksGlmsGG~s~~~wd----ek~~~~L~~~k~rl~eel~ei~~~~~e~~~v~~~ 684 (1141)
T KOG0018|consen 609 SVEDARDLAYGGEIRFKVVALDGTLIHKSGLMSGGSSGAKWD----EKEVDQLKEKKERLLEELKEIQKRRKEVSSVESK 684 (1141)
T ss_pred CHHHHHHhhhcccccceEEEeeeeEEeccceecCCccCCCcC----HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 999999999998888999999999999999999998653321 2223333333334444444443311111111112
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------
Q 001073 697 YMDLKAQLELKLYDLSLFQGRAEQNEHHKLSEIVKKIEQELEEAKSSAKEKQLLYENSVSAVSVLEKSIKEHDN------ 770 (1163)
Q Consensus 697 i~~l~~~~~~~~~~~~~~~g~~~~~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~------ 770 (1163)
+..|+..+........++... ......++...+.++....-++..+...+...+..+..|+..+++...
T Consensus 685 i~~le~~~~~~~~~~~~~k~~-----l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f 759 (1141)
T KOG0018|consen 685 IHGLEMRLKYSKLDLEQLKRS-----LEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGF 759 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222333332222222222211 111233333444444433333334444444444444444333322211
Q ss_pred --hhhh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 001073 771 --NREG---------RLKDLEKKIKAIKVQIQSASKDLKGHENERERLVMEHEAIVKEHASLENQLASVRMQINGLTSEV 839 (1163)
Q Consensus 771 --~~~~---------~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~l~~~~~~l~~~i 839 (1163)
...- .......+..+...++..+..+++-... .+...+++.++ ..++.++.++..+...-
T Consensus 760 ~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~--~d~~~~ve~~~-------~~v~~~~~~~~~~~~~e 830 (1141)
T KOG0018|consen 760 CRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQ--KDTQRRVERWE-------RSVEDLEKEIEGLKKDE 830 (1141)
T ss_pred hhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheec--ccHHHHHHHHH-------HHHHHHHHhHHhhHHHH
Confidence 1000 0112222233333444444443333222 22222222222 22223333332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 840 EEQKNKVAFTRTNHDQAQSELNAIRLKMKECDSQISGILKEQQKLQDKLGEAKLERKRLENEVKRMEMEQKDCSTKVDKL 919 (1163)
Q Consensus 840 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 919 (1163)
......+... .+++. +. .+........+.+.......+..++..+..++..+...+.....+...+
T Consensus 831 ~~~~k~i~e~-~~~e~--------k~-----k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~l 896 (1141)
T KOG0018|consen 831 EAAEKIIAEI-EELEK--------KN-----KSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNL 896 (1141)
T ss_pred HHHHHHHhhH-HHHHH--------HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 2222222222 11111 00 1111222222222222222222222233333333333222222222111
Q ss_pred HHH--hHhHhHhhhhcC----CCCCccccCCCChh-HHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 920 IEK--HAWIASEKQLFG----RSGTDYDFESRDPY-KAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNI 992 (1163)
Q Consensus 920 ~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~-~l~~~l~~l~~~~~~l~~~vn~~~~e~~~~~~~~~~~l~~~~~~ 992 (1163)
... +..+.-...... +.++..+|+++..+ .|+.+|......++.+ .+|+.|.+.|+.+. +..+.++++.
T Consensus 897 L~~ckl~~I~vPl~~gs~~d~~~~ieidy~~L~~~y~L~~kl~e~~~~l~~~--~Pn~kA~~~~d~v~--~~~~~~EfE~ 972 (1141)
T KOG0018|consen 897 LSKCKLEDIEVPLSSGSMDDIVIGIEIDYSGLPREYKLQQKLEEKQSVLNRI--APNLKALERLDEVR--FQEINEEFEA 972 (1141)
T ss_pred HHHhhhccccccccCCCccccceecccccccccHHHHHHHHHHHHHHHHHHh--CcchHHHhhhhhHH--HHHhhHHHHH
Confidence 110 011100000000 01234455554322 4888888888888887 58999999999999 6999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHhhhcCC-ccccccCCCC-Ccccccchhhhhcccccccccccc
Q 001073 993 IENDKSKIKKVIEELDEKKKETLKVTWVKVNKDFGSIFSTLLPG-TMAKLEPPEG-GNFLDGLEVCVAFGGVWKQSLSEL 1070 (1163)
Q Consensus 993 l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~f~~~~~~l~~~-~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 1070 (1163)
......++...++.++..+.+.|+.+|.+|+.+++.||..|++. |.|.|.+.+. +||..||.+.+.||+++.+++.+|
T Consensus 973 ark~ak~ak~~F~~VK~~R~~~F~~~F~~va~~Id~IYK~Ltnt~g~AyL~~en~~EPyl~GIky~~~pP~KRFr~m~~L 1052 (1141)
T KOG0018|consen 973 ARKEAKKAKNAFNKVKKKRYERFMACFEHVADNIDRIYKELTNTEGQAYLGLENPEEPYLDGIKYHCMPPGKRFRPMDNL 1052 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeecCCCCCcchhcCccccccCCccccCchhhc
Confidence 99999999999999999999999999999999999999999854 6777776543 468899999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeee-eCC
Q 001073 1071 SGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKF-VDG 1149 (1163)
Q Consensus 1071 SgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~-~~g 1149 (1163)
||||||++||||+||+|.+.|+||++|||+||+||-.|+.+|..+|+ +++.|||+||+++.+|..||.|.||+. +.+
T Consensus 1053 SGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyIr--~~~~Q~IvISLK~~~y~kadaLVGvyr~~~~ 1130 (1141)
T KOG0018|consen 1053 SGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIR--SSNFQFIVISLKEEFYQKADALVGVYRDQED 1130 (1141)
T ss_pred CccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHHh--cCCceEEEEeccHHHhhhhhceeeeccCccc
Confidence 99999999999999999999999999999999999999999999998 678999999999999999999999999 569
Q ss_pred ceEEEEeecc
Q 001073 1150 VSTVQRTVAT 1159 (1163)
Q Consensus 1150 ~S~v~~~~~~ 1159 (1163)
+|+|.-..-|
T Consensus 1131 ~S~vlt~dL~ 1140 (1141)
T KOG0018|consen 1131 CSKVLTFDLT 1140 (1141)
T ss_pred ccceEEeecC
Confidence 9999865433
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=100.00 E-value=9.9e-99 Score=1001.56 Aligned_cols=1122 Identities=24% Similarity=0.375 Sum_probs=687.2
Q ss_pred ceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhc-cCCcceEEEE
Q 001073 2 YIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQG-QAGITKATVS 80 (1163)
Q Consensus 2 ~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~-~~~~~~a~v~ 80 (1163)
||++|.|.|||||.+.+.+ +|+||+|+|+||||||||||||||+||||+.++..+|+..+.++||.+. ..+...|+|+
T Consensus 1 ~i~~l~l~nf~s~~~~~~i-~f~~~~~~i~G~NGsGKS~ildAi~~~l~~~~~~~~r~~~~~~~i~~~~~~~~~~~~~v~ 79 (1164)
T TIGR02169 1 YIERIELENFKSFGKKKVI-PFSKGFTVISGPNGSGKSNIGDAILFALGLSSSKAMRAERLSDLISNGKNGQSGNEAYVT 79 (1164)
T ss_pred CeeEEEEeCeeeECCeeEE-eecCCeEEEECCCCCCHHHHHHHHHHHhccchhhhhhhhhHHHhhcccccCCCCceEEEE
Confidence 6999999999999987777 6999999999999999999999999999998888899999999998621 1245689999
Q ss_pred EEEecCCCCCCCCCCCCCCeEEEEEEEEe--CCc-eeEEECCeecCHHHHHHHHHHcCCCCCCCceeeeCchhhHHhcCC
Q 001073 81 IVFDNSDRSRSPLGYEDHPEITVTRQIVV--GGR-NKYLINGKLAQPSQVQTLFHSVQLNVNNPHFLIMQGRITKVLNMK 157 (1163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~i~~--~~~-~~~~in~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qg~v~~~~~~~ 157 (1163)
++|.++++. .| +.++|.|+++. +|. +.|++||++++..++.++|..+|+++++++ +|.||+|..|+.|+
T Consensus 80 ~~f~~~~~~-~~------~~~~i~r~~~~~~~~~~~~~~~n~~~~~~~~~~~~l~~~~~~~~~~~-~~~qg~~~~~~~~~ 151 (1164)
T TIGR02169 80 VTFKNDDGK-FP------DELEVVRRLKVTDDGKYSYYYLNGQRVRLSEIHDFLAAAGIYPEGYN-VVLQGDVTDFISMS 151 (1164)
T ss_pred EEEEcCCCC-CC------CcEEEEEEEEEcCCCCcceEEECCccccHHHHHHHHHHcCCCcCcce-EEecchHHHHHCCC
Confidence 999876432 11 45677777654 555 789999999999999999999999998764 68899999999999
Q ss_pred chHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001073 158 PPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINNLLDQEILPALEKLRKERTQYMQWANGNAELDRLRRFCIAY 237 (1163)
Q Consensus 158 p~~~~~~~e~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (1163)
|.+|+.+|++++|+..|..++..+...+......+.++.+.+. ++..++..++..++.+.+|..+...+..++......
T Consensus 152 ~~~r~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~-~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~~~~ 230 (1164)
T TIGR02169 152 PVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIID-EKRQQLERLRREREKAERYQALLKEKREYEGYELLK 230 (1164)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888888774 788888888888888888888777776666655556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHHHHHHHhhh
Q 001073 238 EYVQAEKIRDSAVGEVDRIKAKIAEIDCNTERTRLEIQEMEKQVSNLTAEKEASMGGEVKALSGKVDALSQDLVREVSVL 317 (1163)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~ 317 (1163)
.+.....++..+..++..+..++..+...+..+..++..+...+..+...+.......+..++.++..+...+..+...+
T Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 310 (1164)
T TIGR02169 231 EKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSI 310 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666655554431111233334444444444444444444
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHcccCC-cchhhhH
Q 001073 318 NNKDDTLRSEKENAEKIVRNIEDLKQAVEEKVSAVRKCEEGAADLKKKFEELSKGLEENEKEYQGVLAGKSS-GNEEKCL 396 (1163)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~-~~~~~~~ 396 (1163)
..+..++.....++..+...+..+..++.....++..+...+..+...+..++..+......+..+...+.. ......+
T Consensus 311 ~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 390 (1164)
T TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDY 390 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433333333333333333333333333333333333333222221111 0001112
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Q 001073 397 EDQLADAKVTVGSAETE-------LKQLKTKISHCEKELKEKTHQLMSKREEAVSVESELNARRKDVENVKLA---LESD 466 (1163)
Q Consensus 397 ~~~i~~~~~~~~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---l~~~ 466 (1163)
..++..+...+..+..+ +..+...+..+...+..+...+..+......+...+..+...+..+... +..+
T Consensus 391 ~~~l~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 470 (1164)
T TIGR02169 391 REKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQE 470 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222222 2222222222222222222222222223322322232223332222221 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccc--------c--cCccc--ccCcCcccccccccccccCCchhHHHHHhhccCc
Q 001073 467 RASEMAMAQKLKDEIRDLSAQLANVQFT--------Y--RDPVK--NFDRAKVKGVVAKLIKVKDSSTMTALEVTAGGKL 534 (1163)
Q Consensus 467 ~~~l~~~~~~~~~~l~~l~~~~~~~~~~--------~--~~~~~--~~~~~~~~G~v~~~i~v~~~~~~~aie~~l~~~l 534 (1163)
+..+...+..+...+..+...+..+... + ..... ....++++|+|+++|+|++. |..||++++|+++
T Consensus 471 l~~~~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~g~~g~l~dli~v~~~-y~~Aie~~lg~~l 549 (1164)
T TIGR02169 471 LYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGER-YATAIEVAAGNRL 549 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHhcCCCCceecHHHhcCcCHH-HHHHHHHHhhhhh
Confidence 2223333333333332222222211110 0 00000 00124688999999999865 9999999999999
Q ss_pred ccEEEcCcHHHHHHHHccccC--CceEEeecCCCCCCCCChhhHHHHHhhcCCchhHhhhhccCCChHHHHHHHHhcCCe
Q 001073 535 FNVIVDTESTGKQLLQNGDLR--RRVTIIPLNKIQSHTVPPRVQQAAVRLVGKENAELALSLVGYSDELKTAMEYVFGST 612 (1163)
Q Consensus 535 ~~vvv~~~~~a~~ll~~~~~~--~~~~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~l~d~i~~~~aie~al~~~l~ni 612 (1163)
++|||+|.++|..|+.+++.. |+.+|+|++.+.+.+.+.. + + .+||++++++|+|.|++.+.+++.++||++
T Consensus 550 ~~ivv~~~~~a~~~i~~l~~~~~gr~tflpl~~~~~~~~~~~-~---~--~~~~~~~~~~~~i~~~~~~~~~~~~~lg~~ 623 (1164)
T TIGR02169 550 NNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLS-I---L--SEDGVIGFAVDLVEFDPKYEPAFKYVFGDT 623 (1164)
T ss_pred CCEEECCHHHHHHHHHHHHhcCCCCeeeccHhhcCCCCCCcc-c---c--cCCCchHHHHHHccCcHHHHHHHHHHCCCe
Confidence 999999999999999876532 8999999987743111110 0 0 015788889999999999999999999999
Q ss_pred EEecChHHHHHHHhhcCCCcceeecCCccccCCccccCCCCCCCC-ChhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 613 FVCKSIDAAKEVAFSREIRTPSVTLEGDIFQPSGLLTGGSRRGGG-DLLRQ--LHRLAAVESNLVIHQKRLSEIEAKIKE 689 (1163)
Q Consensus 613 vv~~~~~~a~~I~~~k~~~~~~vT~~G~~~~~~g~i~gg~~~~~~-~~l~~--~~~~~~l~~~l~~~~~~~~~i~~~i~~ 689 (1163)
+||++.+.|..+.. +++|||+||++|.|.|+|+||+..... ..+.. ...+..+..++..+..++..+...+..
T Consensus 624 ~v~~~l~~a~~~~~----~~~~vTldG~~~~~~G~~tgG~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~l~~~~~~ 699 (1164)
T TIGR02169 624 LVVEDIEAARRLMG----KYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRR 699 (1164)
T ss_pred EEEcCHHHHHHHhc----CCcEEEeCceeEcCCcCccCCCCCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988872 678999999999999999999632111 11222 234444555555555555444443333
Q ss_pred HHHHHHHH----HHHHHHHHHHHhhHHHHHHHhhh--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 690 LLPFQKKY----MDLKAQLELKLYDLSLFQGRAEQ--NEHHKLSEIVKKIEQELEEAKSSAKEKQLLYENSVSAVSVLEK 763 (1163)
Q Consensus 690 ~~~~~~~i----~~l~~~~~~~~~~~~~~~g~~~~--~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~ 763 (1163)
.......+ ..+...+.........+...... .....+...+..+...+..+...+..+...+..+..++..+..
T Consensus 700 ~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~el~~l~~~i~~l~~~i~~l~~ 779 (1164)
T TIGR02169 700 IENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE 779 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222111 11111111111111111111100 0001112222223333333333333333333333333333332
Q ss_pred HHHHHhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 001073 764 SIKEHDNNRE-GRLKDLEKKIKAIKVQIQSASKDLKGHENERERLVMEHEAIVKEHASLENQLASVRMQINGLTSEVEEQ 842 (1163)
Q Consensus 764 ~i~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~l~~~~~~l~~~i~~~ 842 (1163)
.+..+..... ..+..+...+..+..++..+...+..+..++..+..++..+..++..+...+..+..++..+...+..+
T Consensus 780 el~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e~~~l~~~~~~l~~~~~~~~~~~~~l 859 (1164)
T TIGR02169 780 ALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENL 859 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222111000 011112222333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 843 KNKVAFTRTNHDQAQSELNAIRLKMKECDSQISGILKEQQKLQDKLGEAKLERKRLENEVKRMEMEQKDCSTKVDKLIEK 922 (1163)
Q Consensus 843 ~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 922 (1163)
...+......+..+...+..+...+..+..++..+...+..+...+..+...+..+...+..+...+..+...+..+...
T Consensus 860 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 939 (1164)
T TIGR02169 860 NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDP 939 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33333333333333333333333333333333333333333333333333333333333222222222222222111111
Q ss_pred hHhHhHhhhhcCCCCCccccCCCChhHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 923 HAWIASEKQLFGRSGTDYDFESRDPYKAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKK 1002 (1163)
Q Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~vn~~~~e~~~~~~~~~~~l~~~~~~l~~~~~~l~~ 1002 (1163)
..++ ..+ .....+...+..++..+..++..++ ++|+.+++.|+...++|.++..++.++..+...+..
T Consensus 940 ~~~~----~~~-------~~~~~~~~~l~~~l~~l~~~i~~l~-~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~ 1007 (1164)
T TIGR02169 940 KGED----EEI-------PEEELSLEDVQAELQRVEEEIRALE-PVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILE 1007 (1164)
T ss_pred hhhh----hhc-------ccccCCHHHHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1000 000 0012356689999999999999998 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHhHHhhhcCCccccccCCCC-CcccccchhhhhccccccccccccChHHHHHHHHH
Q 001073 1003 VIEELDEKKKETLKVTWVKVNKDFGSIFSTLLPGTMAKLEPPEG-GNFLDGLEVCVAFGGVWKQSLSELSGGQRSLLALS 1081 (1163)
Q Consensus 1003 ~i~~l~~~~~~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~lSgGek~~~~ia 1081 (1163)
.|..++..+.+.|..+|..|+.+|..+|..|+ ||.+.|.+.++ +++..|+.+.|.|++....++..||||||++++||
T Consensus 1008 ~i~~l~~~~~~~f~~~f~~~~~~f~~~~~~l~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgge~~~~~la 1086 (1164)
T TIGR02169 1008 RIEEYEKKKREVFMEAFEAINENFNEIFAELS-GGTGELILENPDDPFAGGLELSAKPKGKPVQRLEAMSGGEKSLTALS 1086 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCeEEEEecCCCCcccCCeEEEEEcCCCCCCcchhcCcchHHHHHHH
Confidence 99999999999999999999999999999999 88998876543 34678999999999987788999999999999999
Q ss_pred HHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeeee-CCceEEEEee
Q 001073 1082 LILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKFV-DGVSTVQRTV 1157 (1163)
Q Consensus 1082 ~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~~-~g~S~v~~~~ 1157 (1163)
++||+|.+.|||||||||||+|||+.++..+..+|...+.++|||||||++.++.+||++|||+|. +|||+|+.|.
T Consensus 1087 ~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~~~~~g~S~~~~~~ 1163 (1164)
T TIGR02169 1087 FIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVTMRRNGESQVFGLK 1163 (1164)
T ss_pred HHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEEEecCCeeEEEecc
Confidence 999999999999999999999999999999999999888889999999999999999999999996 8999999874
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=100.00 E-value=6.9e-83 Score=853.46 Aligned_cols=1125 Identities=23% Similarity=0.371 Sum_probs=641.7
Q ss_pred ceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhcc--CCcceEEE
Q 001073 2 YIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQ--AGITKATV 79 (1163)
Q Consensus 2 ~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~--~~~~~a~v 79 (1163)
||++|.|.|||||.+.+.+ +|+||||+||||||||||||||||+||||+.++..+|+.++.++|+.+.. .....++|
T Consensus 1 ~i~~l~~~nf~s~~~~~~i-~f~~~~~~i~G~NGsGKS~ll~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~~~~~~~v 79 (1179)
T TIGR02168 1 RLKKLELAGFKSFADPTTI-NFDKGITGIVGPNGCGKSNIVDAIRWVLGEQSAKALRGGKMEDVIFNGSETRKPLSLAEV 79 (1179)
T ss_pred CeeEEEEeCccccCCCeeE-EecCCcEEEECCCCCChhHHHHHHHHHHcCCchhhhhhccchhhhcCCCcccCCCCeeEE
Confidence 6899999999999987777 69999999999999999999999999999988889999999999986532 12357899
Q ss_pred EEEEecCCCCCCCCCCCCCCeEEEEEEEEeCCceeEEECCeecCHHHHHHHHHHcCCCCCCCceeeeCchhhHHhcCCch
Q 001073 80 SIVFDNSDRSRSPLGYEDHPEITVTRQIVVGGRNKYLINGKLAQPSQVQTLFHSVQLNVNNPHFLIMQGRITKVLNMKPP 159 (1163)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~~~~~~~in~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qg~v~~~~~~~p~ 159 (1163)
+++|++++.. .|. + .+..++|.|.+..+|.+.|++||++++..++..+|..+||+++++ +|++||+|..|+.|+|.
T Consensus 80 ~~~~~~~~~~-~~~-~-~~~~~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~-~~~~q~~~~~~~~~~~~ 155 (1179)
T TIGR02168 80 ELVFDNSDGL-LPG-A-DYSEISITRRLYRDGESEYFINGQPCRLKDIQDLFLDTGLGKRSY-SIIEQGKISEIIEAKPE 155 (1179)
T ss_pred EEEEecCCCC-CCC-C-CCCeEEEEEEEeeCCCceeeECCCcccHHHHHHHHhccCCCcccc-hheecccHHHHHcCCHH
Confidence 9999875432 231 0 146799999998888899999999999999999999999999875 68899999999999999
Q ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001073 160 EILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINNLLDQEILPALEKLRKERTQYMQWANGNAELDRLRRFCIAYEY 239 (1163)
Q Consensus 160 ~~~~~~e~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (1163)
+++.+|++++|+..|..++..+ ..++.++.+++. ++..++..|+.+++.+.+|..+..++..++..+..++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~t-------~~nL~r~~d~l~-el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~ 227 (1179)
T TIGR02168 156 ERRAIFEEAAGISKYKERRKET-------ERKLERTRENLD-RLEDILNELERQLKSLERQAEKAERYKELKAELRELEL 227 (1179)
T ss_pred HHHHHHHHHccHHHHHHHHHHH-------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987765554 445566666664 78889999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHHHHHHHhhhhh
Q 001073 240 VQAEKIRDSAVGEVDRIKAKIAEIDCNTERTRLEIQEMEKQVSNLTAEKEASMGGEVKALSGKVDALSQDLVREVSVLNN 319 (1163)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~ 319 (1163)
..+..++..+...+..+...+..+...+..+...+..++..+..+...+. .+...+..+...+..+...+..+..++..
T Consensus 228 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~l~~~i~~~~~~i~~~~~~~~~ 306 (1179)
T TIGR02168 228 ALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVS-ELEEEIEELQKELYALANEISRLEQQKQI 306 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 87777777777777777777777777777777777666666665544432 22333333344444444444333333333
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHcccCC-cchhhhHHH
Q 001073 320 KDDTLRSEKENAEKIVRNIEDLKQAVEEKVSAVRKCEEGAADLKKKFEELSKGLEENEKEYQGVLAGKSS-GNEEKCLED 398 (1163)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~ 398 (1163)
....+......+..+...+..+..++......+..+...+..+...+..+...+......+..+...+.. ......+..
T Consensus 307 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 386 (1179)
T TIGR02168 307 LRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333333333322222222111100 000111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 001073 399 QLADAKVTVGSAETELKQLKTKISHCEKELKEKTHQL------------MSKREEAVSVESELNARRKDVENVKLAL--- 463 (1163)
Q Consensus 399 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~~l~~~l--- 463 (1163)
++..++..+..+...+..+..++..+..++..+...+ ..+...+..+..++..+...+..+...+
T Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 466 (1179)
T TIGR02168 387 KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEEL 466 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222222222222222222222222111 1222222222222222222222211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccc---cccC----------cccccCcCcccccccccccccCCchhHHHHHhh
Q 001073 464 ESDRASEMAMAQKLKDEIRDLSAQLANVQF---TYRD----------PVKNFDRAKVKGVVAKLIKVKDSSTMTALEVTA 530 (1163)
Q Consensus 464 ~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~---~~~~----------~~~~~~~~~~~G~v~~~i~v~~~~~~~aie~~l 530 (1163)
..++..++..+..+...+..+......+.. .... ....+ .++.|++.++|.+++. |..+++..+
T Consensus 467 ~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~v~~~i~v~~~~--~~~~g~~~~li~~~~~-~~~a~~~~~ 543 (1179)
T TIGR02168 467 REELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGL--SGILGVLSELISVDEG-YEAAIEAAL 543 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhccccc--CCCccchhceeeeChh-HHHHHHHHH
Confidence 011222222222222221111111000000 0000 00011 2477888899988655 999999999
Q ss_pred ccCcccEEEcCcHHHHHHHHcccc--CCceEEeecCCCCCCCCChhhHHHHHhhcCCchhHhhhhccCCChHHHHHHHHh
Q 001073 531 GGKLFNVIVDTESTGKQLLQNGDL--RRRVTIIPLNKIQSHTVPPRVQQAAVRLVGKENAELALSLVGYSDELKTAMEYV 608 (1163)
Q Consensus 531 ~~~l~~vvv~~~~~a~~ll~~~~~--~~~~~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~l~d~i~~~~aie~al~~~ 608 (1163)
|+.+.++||++..+|..++..... .|+.+|+|++.+....++.+ ....... .+|++.++.|++.|++++..++.+.
T Consensus 544 g~~~~~ivv~~~~~a~~~~~~l~~~~~g~~~~l~l~~i~~~~~~~~-~~~~~~~-~~~~~~~~~dl~~~~~~~~~~~~~~ 621 (1179)
T TIGR02168 544 GGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGN-DREILKN-IEGFLGVAKDLVKFDPKLRKALSYL 621 (1179)
T ss_pred HHHhcCeEECCHHHHHHHHHHhcccCCCcEEEeecccccccccccc-chhhccc-cCchhHHHHHHhcccHhHHHHHHHH
Confidence 999999999999998888765443 26788999877643211110 0000001 1577888999999999999988888
Q ss_pred cCCeEEecChHHHHHHHhhcCCCcceeecCCccccCCccccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 609 FGSTFVCKSIDAAKEVAFSREIRTPSVTLEGDIFQPSGLLTGGSRRGGGDLLRQLHRLAAVESNLVIHQKRLSEIEAKIK 688 (1163)
Q Consensus 609 l~nivv~~~~~~a~~I~~~k~~~~~~vT~~G~~~~~~g~i~gg~~~~~~~~l~~~~~~~~l~~~l~~~~~~~~~i~~~i~ 688 (1163)
++++.+|++.+.|..+.+.....+.+||++|+++.++|.++|+..............+..+...+..+...+..+...+.
T Consensus 622 ~~~~~ivt~l~~a~~~~~~~~~~g~~v~~~G~~~~~gg~~~~~~~~~~~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~ 701 (1179)
T TIGR02168 622 LGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALA 701 (1179)
T ss_pred hCCceEeCCHHHHHHHHHHcCCCceEEecCCEEEcCCceEecCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888777654445678888888777777765543211111111223334444444444444444444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 689 ELLPFQKKYMDLKAQLELKLYDLSLFQGRAEQ--NEHHKLSEIVKKIEQELEEAKSSAKEKQLLYENSVSAVSVLEKSIK 766 (1163)
Q Consensus 689 ~~~~~~~~i~~l~~~~~~~~~~~~~~~g~~~~--~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~i~ 766 (1163)
...... ..+..++.........+...... .....+..++..+..++..+...+..+..++..+...+..+...+.
T Consensus 702 ~~~~~l---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 778 (1179)
T TIGR02168 702 ELRKEL---EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778 (1179)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332221 11222221111111111111100 0001112223333333333333333333333333333322222221
Q ss_pred HHhh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 001073 767 EHDN---NREGRLKDLEKKIKAIKVQIQSASKDLKGHENERERLVMEHEAIVKEHASLENQLASVRMQINGLTSEVEEQK 843 (1163)
Q Consensus 767 ~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~l~~~~~~l~~~i~~~~ 843 (1163)
.... .....+..+...+..+...+..+...+..+..++..+...+..+...+..+..++..+..++..+...+..+.
T Consensus 779 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 858 (1179)
T TIGR02168 779 EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 0011222233333333333333333333333333333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001073 844 NKVAFTRTNHDQAQSELNAIRLKMKECDSQISGILKEQQKLQDKLGEAKLERKRLENEVKRMEMEQKDCSTKVDKLIEKH 923 (1163)
Q Consensus 844 ~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 923 (1163)
..+..+...+..+...+..+...+..+..++..+...+..+...+..+...+..+...+..+...+..+...+..+...+
T Consensus 859 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l 938 (1179)
T TIGR02168 859 AEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI 938 (1179)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333333333322222
Q ss_pred HhHhHhh-hhcCCCCCccccCCCChhHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 001073 924 AWIASEK-QLFGRSGTDYDFESRDPYKAREELEKLQAEQSGLEKRVNKKVMAMFEKAE----DEYNDLMSKKNIIENDKS 998 (1163)
Q Consensus 924 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~vn~~~~e~~~~~~----~~~~~l~~~~~~l~~~~~ 998 (1163)
....... ..+..+. .+...... .+...+..++.++..++. ++++|..+. ++|.++..++.++..+.+
T Consensus 939 ~e~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~l~~~i~~lg~-----aiee~~~~~~~a~er~~~l~~q~~dL~~~~~ 1010 (1179)
T TIGR02168 939 DNLQERLSEEYSLTL--EEAEALEN-KIEDDEEEARRRLKRLEN-----KIKELGPVNLAAIEEYEELKERYDFLTAQKE 1010 (1179)
T ss_pred HHHHHHHHHHhccCH--HHHHhhcc-ccccCHHHHHHHHHHHHH-----HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111100 0000000 00000000 023445666666666662 666666655 677777777777777777
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHhhhhHHhH----HhhhcCCccccccCCCC-Ccccccchhhhhcccccccccccc
Q 001073 999 KIKKVIEELDEKKKETL---KVTWVKVNKDFGSI----FSTLLPGTMAKLEPPEG-GNFLDGLEVCVAFGGVWKQSLSEL 1070 (1163)
Q Consensus 999 ~l~~~i~~l~~~~~~~~---~~~~~~~~~~f~~~----~~~l~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 1070 (1163)
.+...|..++..+...| ..+|..|+.+|..+ |..+++||.+.|.+.++ +++..|+.+.|.|++.+..++..|
T Consensus 1011 ~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1090 (1179)
T TIGR02168 1011 DLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRVFPKLFGGGEAELRLTDPEDLLEAGIEIFAQPPGKKNQNLSLL 1090 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcccccCceEEEeCCCCcccccccc
Confidence 77777777777777777 66777666666555 55556788888766533 346789999999998888899999
Q ss_pred ChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeeee-CC
Q 001073 1071 SGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKFV-DG 1149 (1163)
Q Consensus 1071 SgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~~-~g 1149 (1163)
||||+++++||++||+|.+.||||+||||||++||+.++..+..+|..+..+.|||||||++.++..||++|||++. +|
T Consensus 1091 S~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~~~~~~~ 1170 (1179)
T TIGR02168 1091 SGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGVTMQEKG 1170 (1179)
T ss_pred CccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeeeeeccCC
Confidence 99999999999999999999999999999999999999999999999887779999999999999999999999998 59
Q ss_pred ceEEEEe
Q 001073 1150 VSTVQRT 1156 (1163)
Q Consensus 1150 ~S~v~~~ 1156 (1163)
+|+|+.+
T Consensus 1171 ~~~~~~~ 1177 (1179)
T TIGR02168 1171 VSKIVSV 1177 (1179)
T ss_pred ceeEeec
Confidence 9999976
No 8
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=100.00 E-value=1.8e-72 Score=650.30 Aligned_cols=578 Identities=20% Similarity=0.300 Sum_probs=345.1
Q ss_pred ceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEEE
Q 001073 2 YIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSI 81 (1163)
Q Consensus 2 ~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~~ 81 (1163)
+|.+|.|.|||||.+.. | .|+|++|+||||||||||.||.||++|||+.+..+.||++++|||. .|+++|.|+|
T Consensus 41 ~I~sI~L~NFMCHsnL~-I-eFg~~vNfI~G~NGSGKSAIltAl~lglG~rAs~tnRgsslK~lIK----~G~~~A~IsI 114 (1074)
T KOG0250|consen 41 KIESIHLTNFMCHSNLL-I-EFGPRVNFIVGNNGSGKSAILTALTLGLGGRASATNRGSSLKDLIK----DGCSSAKISI 114 (1074)
T ss_pred eEEEEEEeeecccccce-e-ccCCCceEeecCCCCcHHHHHHHHHHhhccccccccchhhHHHHHh----CCCcceEEEE
Confidence 68999999999999883 3 8999999999999999999999999999999999999999999996 5789999999
Q ss_pred EEecCCCCCC-CCCCCCCCeEEEEEEEEeCCceeEEE---CCeecC--HHHHHHHHHHcCCCCCCCceeeeCchhhHHhc
Q 001073 82 VFDNSDRSRS-PLGYEDHPEITVTRQIVVGGRNKYLI---NGKLAQ--PSQVQTLFHSVQLNVNNPHFLIMQGRITKVLN 155 (1163)
Q Consensus 82 ~~~~~~~~~~-~~~~~~~~~~~i~r~i~~~~~~~~~i---n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Qg~v~~~~~ 155 (1163)
++.|+|..+. |..| ++.|+|.|+|.++|++.|.. +|+.|+ ..|+..++..+||+++||+||++|+...+|+.
T Consensus 115 tL~N~G~~Afk~eiy--G~~IiIER~I~~~~S~~~~~~~~~grvVStKk~dl~~vv~~f~I~veNP~~~lsQD~aR~FL~ 192 (1074)
T KOG0250|consen 115 TLSNSGLDAFKPEIY--GNSIIIERTIRRSSSTYYLLRSANGRVVSTKKEDLDTVVDHFNIQVENPMFVLSQDAARSFLA 192 (1074)
T ss_pred EEecCCcccCChhhc--CCeeEEEEeeccccchHHHHhhccCccccccHHHHHHHHHHhCcCCCCcchhhcHHHHHHHHh
Confidence 9999887754 3334 37899999999888777766 477776 56899999999999999999999999999985
Q ss_pred -CCchHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001073 156 -MKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINNLLDQEILPALEKLRKERTQYMQWANGNAELDRLRRFC 234 (1163)
Q Consensus 156 -~~p~~~~~~~e~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 234 (1163)
++|.+.+.+|-++.-......-+......+..+...+......+. .+.+++...+......+.-..+.+.+..++..+
T Consensus 193 ~~~p~dkYklfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~-~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~ 271 (1074)
T KOG0250|consen 193 NSNPKDKYKLFMKATQLEQITESYSEIMESLDHAKELIDLKEEEIK-NLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKM 271 (1074)
T ss_pred cCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999988887655555555555555555555555444332 455666666666666666677777788888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHHHHHHH
Q 001073 235 IAYEYVQAEKIRDSAVGEVDRIKAKIAEIDCNTERTRLEIQEMEKQVSNLTAEKEASMGGEVKALSGKVDALSQDLVREV 314 (1163)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~ 314 (1163)
.|........+++...+.+...+.++..+++.+......+..++..+.+.++++. .+....+....++.
T Consensus 272 ~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~--------~~~~e~~~~d~Ei~--- 340 (1074)
T KOG0250|consen 272 AWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIG--------ELKDEVDAQDEEIE--- 340 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH--------HHHHhhhhhhHHHH---
Confidence 7766666778888888888888888888888777777777766666555544432 11111111111111
Q ss_pred hhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHcccCCcchhh
Q 001073 315 SVLNNKDDTLRSEKENAEKIVRNIEDLKQAVEEKVSAVRKCEEGAADLKKKFEELSKGLEENEKEYQGVLAGKSSGNEEK 394 (1163)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~ 394 (1163)
...+.+..+..+..+++.++..... .+...+..++.++..+..+++... .
T Consensus 341 -----------~~r~~~~~~~re~~~~~~~~~~~~n-------~i~~~k~~~d~l~k~I~~~~~~~~------------~ 390 (1074)
T KOG0250|consen 341 -----------EARKDLDDLRREVNDLKEEIREIEN-------SIRKLKKEVDRLEKQIADLEKQTN------------N 390 (1074)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH------------h
Confidence 1111122222222222222222111 112222222222222222222210 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 395 CLEDQLADAKVTVGSAETELKQLKTKISHCEKELKEKTHQLMSKREEAVSVESELNARRKDVENVKLALESDRASEMAMA 474 (1163)
Q Consensus 395 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~ 474 (1163)
....++.+..+++..+..++..++..+..|..+++.+.......+.+.......+..+...++.....+..-.....+++
T Consensus 391 ~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkv 470 (1074)
T KOG0250|consen 391 ELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKV 470 (1074)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 11111222222222222222222222222322222222222222222222222222222222222222111001111112
Q ss_pred HHHHHHHHHHHHHhhcccccccCcccccCcCcccccccccccccCCchhHHHHHhhccCcccEEEcCcHHHHH---HHHc
Q 001073 475 QKLKDEIRDLSAQLANVQFTYRDPVKNFDRAKVKGVVAKLIKVKDSSTMTALEVTAGGKLFNVIVDTESTGKQ---LLQN 551 (1163)
Q Consensus 475 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~G~v~~~i~v~~~~~~~aie~~l~~~l~~vvv~~~~~a~~---ll~~ 551 (1163)
.........+-..+.. ....|+. .|.||+|.+|++++++|+.+||.|+|+.+++|||.++.|+.. |++.
T Consensus 471 s~FG~~m~~lL~~I~r-------~~~~f~~-~P~GPlG~~Vtl~~~KWa~aIE~~L~n~lnaFiv~sh~D~~~Lr~i~~~ 542 (1074)
T KOG0250|consen 471 SAFGPNMPQLLRAIER-------RKRRFQT-PPKGPLGKYVTLKEPKWALAIERCLGNLLNAFIVTSHKDARILRAIMRR 542 (1074)
T ss_pred hhcchhhHHHHHHHHH-------HHhcCCC-CCCCCccceeEecCcHHHHHHHHHHHHhhhhheeCCHhhHHHHHHHHHH
Confidence 2222221111111111 1123443 689999999999999999999999999999999999999764 4443
Q ss_pred cccCC-ceEEeecCCCCCCCCChhhHHHHHhhcCCch-hHhhhhccCCChHH-HHHH--HHhcCCeEEecC-hHHHHHHH
Q 001073 552 GDLRR-RVTIIPLNKIQSHTVPPRVQQAAVRLVGKEN-AELALSLVGYSDEL-KTAM--EYVFGSTFVCKS-IDAAKEVA 625 (1163)
Q Consensus 552 ~~~~~-~~~~~~l~~l~~~~v~~~~~~~~~~~~~~~~-~~~l~d~i~~~~ai-e~al--~~~l~nivv~~~-~~~a~~I~ 625 (1163)
.+..+ ++++ .+....+...+. .. .|+. ++++++++.|+++. ..+| -..+..+|+..+ .++...+.
T Consensus 543 ~~~~~~~ptI-vvs~~~~~~y~~-------~~-~p~~~~pTil~~le~ddp~V~N~LID~s~iE~~lLiEdk~Ea~~~m~ 613 (1074)
T KOG0250|consen 543 LKIPGNRPTI-VVSSFTPFDYSV-------GR-NPGYEFPTILDALEFDDPEVLNVLIDKSGIEQVLLIEDKKEAREFMQ 613 (1074)
T ss_pred cCCCCCCCcE-EEecCCcccccc-------cc-CCCCCCCceeeeeecCChHHHHHhhhhccceeEEEecchHHHHHHHh
Confidence 32222 2333 223321111111 11 1555 67889999997653 2222 223356677777 55555555
Q ss_pred hh--cCCCcceeecCCcc-ccCCc
Q 001073 626 FS--REIRTPSVTLEGDI-FQPSG 646 (1163)
Q Consensus 626 ~~--k~~~~~~vT~~G~~-~~~~g 646 (1163)
+. |.+-..++|+||+. |.+++
T Consensus 614 s~~~p~n~~~aytldg~~~~~~g~ 637 (1074)
T KOG0250|consen 614 SDKPPANVTKAYTLDGRQIFAGGP 637 (1074)
T ss_pred cCCCCccceeeeccCccccccCCC
Confidence 54 44456688999986 44433
No 9
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=3.1e-72 Score=637.40 Aligned_cols=971 Identities=17% Similarity=0.225 Sum_probs=551.0
Q ss_pred eeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEEEE
Q 001073 3 IKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIV 82 (1163)
Q Consensus 3 i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~~~ 82 (1163)
|.+|+|+||.+|....+ .++|.||+||||||||||||+||||+||||+|...+|++.+.+||. .|+..+.|+|+
T Consensus 22 IvrI~l~NF~Ty~~~e~--~pgpsLNmIiGpNGSGKSSiVcAIcLglgG~Pk~lGRak~VgeyIK----~G~~~g~IEI~ 95 (1072)
T KOG0979|consen 22 IVRIELHNFLTYDHTEF--LPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEYIK----RGEDEGYIEIE 95 (1072)
T ss_pred eEEEEEeeeeeeeeeee--cCCCceeeEECCCCCCchHHHHHHHHHcCCChhhccchhHHHHHHh----cCCccceEEEE
Confidence 78999999999987654 5789999999999999999999999999999999999999999996 46889999999
Q ss_pred EecCCCCCCCCCCCCCCeEEEEEEEEeCCceeEEECCeecCHHHHHHHHHHcCCCCCCCceeeeCchhhHHhcCCchHHH
Q 001073 83 FDNSDRSRSPLGYEDHPEITVTRQIVVGGRNKYLINGKLAQPSQVQTLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEIL 162 (1163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~i~r~i~~~~~~~~~in~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qg~v~~~~~~~p~~~~ 162 (1163)
+.+. ...++|+|.|.+.+.|.|+|||..++.++|.+++..++|+++|+|.|+||++|.+|+..+|-++|
T Consensus 96 l~~~-----------~e~~~ItR~I~~~k~S~y~iN~~a~t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~L~pi~LL 164 (1072)
T KOG0979|consen 96 LKDK-----------DETLTITRLISRDKESKYFINDSATTKSEIEELVAHFNIQIDNLCQFLPQDKVKEFARLSPIELL 164 (1072)
T ss_pred EecC-----------CCceEEEEEEeecCCcceeeccchhhhHHHHHHHHHHhcccCchhhhccHHHHHHHHcCChHHHH
Confidence 9864 25789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhchh-hhHHHHHHHHHHHHHHHhhHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001073 163 SMLEEAAGTR-MYETKKEAALKTLEKKQSKVDEINNLLD------QEILPALEKLRKERTQYMQWANGNAELDRLRRFCI 235 (1163)
Q Consensus 163 ~~~e~~~g~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (1163)
..++.++|.. +...|.+ +..+.. +...+.+.+. ..+..+.+.+++.++.+.++......++-+....+
T Consensus 165 ~eTekAig~~~ll~~h~e--L~~lr~---~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~ 239 (1072)
T KOG0979|consen 165 VETEKAIGAEELLQYHIE--LMDLRE---DEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKK 239 (1072)
T ss_pred HHHHHhcCchhhHHHHHH--HHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999976 5555432 223322 2233332221 25788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHHHHHHHh
Q 001073 236 AYEYVQAEKIRDSAVGEVDRIKAKIAEIDCNTERTRLEIQEMEKQVSNLTAEKEASMGGEVKALSGKVDALSQDLVREVS 315 (1163)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~ 315 (1163)
|+.|..+..+++.+....+.++.++..+.+...++......++.+..+..+++ .....
T Consensus 240 ~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~---------------s~~~~------- 297 (1072)
T KOG0979|consen 240 WVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKI---------------SQKQR------- 297 (1072)
T ss_pred ccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHH---------------HHHHH-------
Confidence 99999999999999999999999999998888888777777666444333322 11111
Q ss_pred hhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHcccCCcchhhh
Q 001073 316 VLNNKDDTLRSEKENAEKIVRNIEDLKQAVEEKVSAVRKCEEGAADLKKKFEELSKGLEENEKEYQGVLAGKSSGNEEKC 395 (1163)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~ 395 (1163)
.+.....++......+......+.....+++.++.......+.+....+.+...+..+..... ...
T Consensus 298 -------~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~-------~e~ 363 (1072)
T KOG0979|consen 298 -------ELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETED-------PEN 363 (1072)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC-------ccc
Confidence 122222222222223333333333333333333333333444444444444444444433321 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 001073 396 LEDQLADAKVTVGSAETELKQLKTKISHCEKELKEKTHQLMSKREEAVSVESELNARRKDVENVKLALES-DRASEMAMA 474 (1163)
Q Consensus 396 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~l~~~~ 474 (1163)
...++.++..++...... .+....+..+.+.... ....++....+.+........+ ....+++..
T Consensus 364 ~~~~~~ei~~~~~~~~~~---------~~~~~~~~id~~~~~~-----~~~~~l~~~kr~~~~~~~~~~~k~~~~l~~~~ 429 (1072)
T KOG0979|consen 364 PVEEDQEIMKEVLQKKSS---------KLRDSRQEIDAEQLKS-----QKLRDLENKKRKLKQNSDLNRQKRYRVLRQGS 429 (1072)
T ss_pred cchhHHHHHHHHHHHHhh---------hhhhhhhhhhHHHHHH-----HHHHHHHHHHHHHHHHhhhhhhhHHHHhccCc
Confidence 112222222211111110 0111111111110000 0111111112222111111111 244455555
Q ss_pred HHHHHHHHHHHHHhhcccccccCcccccCcCcccccccccccccCCchhHHHHHhhccC-cccEEEcCcHHHHHHHHccc
Q 001073 475 QKLKDEIRDLSAQLANVQFTYRDPVKNFDRAKVKGVVAKLIKVKDSSTMTALEVTAGGK-LFNVIVDTESTGKQLLQNGD 553 (1163)
Q Consensus 475 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~G~v~~~i~v~~~~~~~aie~~l~~~-l~~vvv~~~~~a~~ll~~~~ 553 (1163)
.+....+.|++.. ...|+. .++||+.--+++++..|+.+||.++|.+ +.+|||.+.+|...+++...
T Consensus 430 ~d~~dAy~wlren-----------r~~FK~-~vyeP~~m~l~~k~~~~A~~lEn~v~~~~~~~Fi~~~~eD~~lf~~~i~ 497 (1072)
T KOG0979|consen 430 SDAYDAYQWLREN-----------RSEFKD-EVYEPPIMTLNVKNAEFAKYLENFVGFNDLKAFICCDSEDYLLFVKKIK 497 (1072)
T ss_pred hHHHHHHHHHHHC-----------HHHhcc-cccCCceEEEecCChHHHHHHHcccCccccceeeeechHHHHHHHHHhh
Confidence 6666666776652 124555 7999999999999999999999999887 89999999999887775433
Q ss_pred c-CCce--EEe-ecCCCCCCCCChhhHHHHHhhcCCchhHhhhhccCCChHHHHHHHHhcC-CeEEecChHHHHHHHhhc
Q 001073 554 L-RRRV--TII-PLNKIQSHTVPPRVQQAAVRLVGKENAELALSLVGYSDELKTAMEYVFG-STFVCKSIDAAKEVAFSR 628 (1163)
Q Consensus 554 ~-~~~~--~~~-~l~~l~~~~v~~~~~~~~~~~~~~~~~~~l~d~i~~~~aie~al~~~l~-nivv~~~~~~a~~I~~~k 628 (1163)
. ++++ .++ |-....+...|+........ -||.+++.+++++++.+-..|....+ +.+.+...++-.++....
T Consensus 498 d~k~~vn~~~~~~~~~k~~d~~p~~sre~l~~---lGF~gyls~f~~~p~~vm~~Lc~~~~ih~IPvs~~~~~e~~~~~~ 574 (1072)
T KOG0979|consen 498 DEKWRVNASEVIPREKKYADKIPAQSREELKR---LGFEGYLSNFIEAPEPVMSYLCNVSKIHRIPVSKREVEEAIVEVL 574 (1072)
T ss_pred hcceeeeceeccccccccccCCCccCHHHHHh---cChHHHhhhhhcCcHHHHHHHHHhccccccccCcccccHHHHHHH
Confidence 2 2222 111 21111122222211111122 39999999999999987776655544 445555445444444322
Q ss_pred CCCcceeecCCccccCCccccCCCCCCC------CC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 629 EIRTPSVTLEGDIFQPSGLLTGGSRRGG------GD-LLRQLHRLAAVESNLVIHQKRLSEIEAKIKELLPFQKKYMDLK 701 (1163)
Q Consensus 629 ~~~~~~vT~~G~~~~~~g~i~gg~~~~~------~~-~l~~~~~~~~l~~~l~~~~~~~~~i~~~i~~~~~~~~~i~~l~ 701 (1163)
. ..-+++|++|+.. .+.||..... +. ++.... .+.. .++.. . ..+ +.
T Consensus 575 ~---~~r~~~~~~~~~~-~i~g~~~~~i~~S~ygs~~v~~~~~---~lk~---------~~f~~-------~--~~~-l~ 628 (1072)
T KOG0979|consen 575 Q---NIRQPNGSVFLKR-NIAGGRSKSIKKSAYGSRQVITRND---PLKS---------RNFFS-------V--SPV-LE 628 (1072)
T ss_pred h---ccccCCCchhHHH-HhhcCchhhhhhhccccceeeecCC---cchh---------hhhhc-------c--chH-HH
Confidence 2 2236778877642 4455543210 00 000000 0000 00000 0 000 00
Q ss_pred HHHHHHHhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 001073 702 AQLELKLYDLSLFQGRAEQNEHHKLSEIVKKIEQELEEAKSSAKEKQLLYENSVSAVSVLEKSIKEHDNNREGRLKDLEK 781 (1163)
Q Consensus 702 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~~~~~~~~l~~ 781 (1163)
+. ......++..+..++......+..++.+.......+......+.... .+...++.
T Consensus 629 -~~------------------~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~----~er~~~~~ 685 (1072)
T KOG0979|consen 629 -EL------------------DNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLK----RERTKLNS 685 (1072)
T ss_pred -HH------------------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhh
Confidence 00 00011222222233333333333333333333322222222111111 01111111
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001073 782 KIKAIKVQIQSASK---DLKGHENERERLVMEHEAIVKEHASLENQ-LASVRMQINGLTSEVEEQKNKVAFTRTNHDQAQ 857 (1163)
Q Consensus 782 ~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-l~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~l~ 857 (1163)
.+........+++. .+...+.++...... .|...... +..+...+. +...+... .+........-+.
T Consensus 686 ~~~~~~~r~~~ie~~~~~l~~qkee~~~~~~~------~I~~~~~~~~~~~~~~~~-~~~k~~e~--~i~~~~~~~~~~~ 756 (1072)
T KOG0979|consen 686 ELKSYQQRKERIENLVVDLDRQEEEYAASEAK------KILDTEDMRIQSIRWHLE-LTDKHKEI--GIKEKNESSYMAR 756 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHH-HHHHHHHH--HHHhhhhHHHHHH
Confidence 11111111111111 111111111100000 00000000 000000000 00000000 0000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-HhHhHhHhhhhcC
Q 001073 858 SELNAIRLKMKECDSQISGILKEQQKLQDKLGEAKLERKRLENEVKRMEM--EQKDCSTKVDKLIE-KHAWIASEKQLFG 934 (1163)
Q Consensus 858 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~-~~~~~~~~~~~~~ 934 (1163)
..+... .+...+......+.-+.+....+...+.......+.... .+......+..... ..+........|.
T Consensus 757 s~~~~i-----ea~~~i~~~e~~i~~~~~~~~~lk~a~~~~k~~a~~~~~~~~~~t~~~~~~s~~~~~~ek~~~~~~e~~ 831 (1072)
T KOG0979|consen 757 SNKNNI-----EAERKIEKLEDNISFLEAREDLLKTALEDKKKEAAEKRKEQSLQTLKREIMSPATNKIEKSLVLMKELA 831 (1072)
T ss_pred HHHHHH-----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHhhhccccccccchhhHHHHHHHHH
Confidence 000000 000111111111111111111111111112111111110 00000000000000 0000000000000
Q ss_pred CCCCccccCCCChhHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 935 RSGTDYDFESRDPYKAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKET 1014 (1163)
Q Consensus 935 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~vn~~~~e~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~ 1014 (1163)
. ...+..++.+.|..-.++...+. .+|..+.++|+.+++.+..+...+.+.....+.+...+..+.+.|...
T Consensus 832 e-------~p~t~~eld~~I~~e~t~~~~~~-n~ne~~vq~y~~r~~el~~l~~~~~~~~~~le~i~~kl~~~ke~w~~~ 903 (1072)
T KOG0979|consen 832 E-------EPTTMDELDQAITDELTRALKFE-NVNEDAVQQYEVREDELRELETKLEKLSEDLERIKDKLSDVKEVWLPK 903 (1072)
T ss_pred h-------CCCcHHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHH
Confidence 0 01255577777776666555554 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhHHhHHhhhcCCccccccCCCCCccc-ccchhhhhcccc---ccccccccChHHHHHHHHHHHHHHhccC
Q 001073 1015 LKVTWVKVNKDFGSIFSTLLPGTMAKLEPPEGGNFL-DGLEVCVAFGGV---WKQSLSELSGGQRSLLALSLILALLLFK 1090 (1163)
Q Consensus 1015 ~~~~~~~~~~~f~~~~~~l~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~lSgGek~~~~ia~~lal~~~~ 1090 (1163)
+...+.+|+..|...|+.+.+.|...|.. .+.|+. +||+|+|.|+.. ..-..+.-|||||++++|.|++|||.++
T Consensus 904 le~~V~~In~~Fs~~F~~mg~aGeV~L~~-~~~DydkwgI~ImVkFR~s~~L~~L~sh~QSGGERSVSTiLYLlALQ~l~ 982 (1072)
T KOG0979|consen 904 LEEMVEQINERFSQLFSSMGCAGEVSLEV-NPLDYDKWGIMIMVKFRDSEGLKVLDSHRQSGGERSVSTILYLLALQELT 982 (1072)
T ss_pred HHHHHHHHHHHHHHHHhhcccCceEEecc-CcccHhHhceEEEEEEccCcccccccccccCCcchHHHHHHHHHHHhhcc
Confidence 99999999999999999997767666553 455666 699999999853 2235677799999999999999999999
Q ss_pred CCCEEEeecCccCCCHHhHHHHHHHHhhhC---CCCeEEEEEeCc
Q 001073 1091 PAPLYILDEVDAALDLSHTQNIGRMIKTHF---PHSQFIVVSLKE 1132 (1163)
Q Consensus 1091 ~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~---~~~q~i~it~~~ 1132 (1163)
||||+|+|||++||||.|.+.++++|...+ ..+||++||++.
T Consensus 983 ~~PFRvVDEINQGMDp~NER~Vh~~mV~~ac~entsQyFliTPKL 1027 (1072)
T KOG0979|consen 983 PAPFRVVDEINQGMDPRNERKVHDIMVNMACKENTSQYFLITPKL 1027 (1072)
T ss_pred CCCeeehhhhhcCCCchhHHHHHHHHHHHhhcCCCcceEEecchh
Confidence 999999999999999999999999987643 468999999994
No 10
>PRK02224 chromosome segregation protein; Provisional
Probab=100.00 E-value=4.2e-47 Score=484.73 Aligned_cols=157 Identities=22% Similarity=0.387 Sum_probs=116.0
Q ss_pred CceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEE
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVS 80 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~ 80 (1163)
|+|++|.|.||+||.+.+ + +|+||+|+|+|||||||||||+||+|||++.++. ...+.++|+. |...++|+
T Consensus 1 M~i~~l~l~nf~~~~~~~-~-~f~~g~~~i~G~Ng~GKStil~ai~~~l~g~~~~---~~~~~~~~~~----~~~~~~v~ 71 (880)
T PRK02224 1 MRFDRVRLENFKCYADAD-L-RLEDGVTVIHGVNGSGKSSLLEACFFALYGSKAL---DDTLDDVITI----GAEEAEIE 71 (880)
T ss_pred CeEEEEEEECcccccceE-E-ecCCCeEEEECCCCCCHHHHHHHHHHHhCCCccc---cccHHHHHhC----CCCcEEEE
Confidence 999999999999998764 3 7999999999999999999999999999876532 2456788863 45578999
Q ss_pred EEEecCCCCCCCCCCCCCCeEEEEEEEEeCCc----eeEE-ECCe--ecCHHHHHHHHHH-cCCCC--CCCceeeeCchh
Q 001073 81 IVFDNSDRSRSPLGYEDHPEITVTRQIVVGGR----NKYL-INGK--LAQPSQVQTLFHS-VQLNV--NNPHFLIMQGRI 150 (1163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~~~----~~~~-in~~--~~~~~~~~~~~~~-~~~~~--~~~~~~~~Qg~v 150 (1163)
++|.+.+ ..+.|.|++...|. ..|+ .+|. .....++...+.. +|++. ...+++||||++
T Consensus 72 ~~f~~~~-----------~~~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~llg~~~~~f~~~~~i~Qge~ 140 (880)
T PRK02224 72 LWFEHAG-----------GEYHIERRVRLSGDRATTAKCVLETPEGTIDGARDVREEVTELLRMDAEAFVNCAYVRQGEV 140 (880)
T ss_pred EEEEECC-----------EEEEEEEEEecCCCCcccceeEEeCCCccccChHHHHHHHHHHHCCCHHHhcceeEeeccCh
Confidence 9998642 35678887754432 2333 2332 1222333333222 26543 234567999999
Q ss_pred hHHhcCCchHHHHHHHHHhchhhhHHH
Q 001073 151 TKVLNMKPPEILSMLEEAAGTRMYETK 177 (1163)
Q Consensus 151 ~~~~~~~p~~~~~~~e~~~g~~~~~~~ 177 (1163)
..|+.++|.+|..+|++++|+..|+..
T Consensus 141 ~~~l~~~p~~R~~ii~~l~~l~~~e~~ 167 (880)
T PRK02224 141 NKLINATPSDRQDMIDDLLQLGKLEEY 167 (880)
T ss_pred HHHHcCCHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999999999877654
No 11
>PRK03918 chromosome segregation protein; Provisional
Probab=100.00 E-value=4.9e-46 Score=476.74 Aligned_cols=176 Identities=22% Similarity=0.311 Sum_probs=128.6
Q ss_pred CceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEE
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVS 80 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~ 80 (1163)
|+|.+|.|.||+||.+.+ + +|+||+|+|+||||||||||++||+||||+..+...|+....++|+. |...++|+
T Consensus 1 m~i~~l~i~nf~~~~~~~-i-~f~~g~~~i~G~nG~GKStil~ai~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~v~ 74 (880)
T PRK03918 1 MKIEELKIKNFRSHKSSV-V-EFDDGINLIIGQNGSGKSSILEAILVGLYWGHGSKPKGLKKDDFTRI----GGSGTEIE 74 (880)
T ss_pred CeeEEEEEeCccCccCce-E-ecCCCcEEEEcCCCCCHHHHHHHHHHHhcCCCCCCccccChhhcccC----CCCCEEEE
Confidence 999999999999998754 4 79999999999999999999999999998754444555555678863 34579999
Q ss_pred EEEecCCCCCCCCCCCCCCeEEEEEEEEeCCceeEEE-CCe---ecCHHHHHHHHHH-cCCCCCCCceeeeCchhhHHhc
Q 001073 81 IVFDNSDRSRSPLGYEDHPEITVTRQIVVGGRNKYLI-NGK---LAQPSQVQTLFHS-VQLNVNNPHFLIMQGRITKVLN 155 (1163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~~~~~~~i-n~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~Qg~v~~~~~ 155 (1163)
++|...+ ..++|.|.+.++ .+.+++ +|. ..+..++...+.. ++..+...+++++||++..|+.
T Consensus 75 ~~f~~~~-----------~~~~i~R~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~~~~Qg~~~~~~~ 142 (880)
T PRK03918 75 LKFEKNG-----------RKYRIVRSFNRG-ESYLKYLDGSEVLEEGDSSVREWVERLIPYHVFLNAIYIRQGEIDAILE 142 (880)
T ss_pred EEEEECC-----------eEEEEEEEEcCC-ceEEEECCCCeeecccHHHHHHHHHHhcCHHHhceeEEEeccchHHHhc
Confidence 9997532 456788887653 334433 553 3345566665554 2333323445789999999986
Q ss_pred CCchHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhHHHH
Q 001073 156 MKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEI 195 (1163)
Q Consensus 156 ~~p~~~~~~~e~~~g~~~~~~~~~~~~~~l~~~~~~~~~~ 195 (1163)
+|.+|..+|++++|+..|+..+..+..........+..+
T Consensus 143 -~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 181 (880)
T PRK03918 143 -SDESREKVVRQILGLDDYENAYKNLGEVIKEIKRRIERL 181 (880)
T ss_pred -CcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999877665555544444443333
No 12
>PRK01156 chromosome segregation protein; Provisional
Probab=100.00 E-value=3.4e-42 Score=438.49 Aligned_cols=172 Identities=22% Similarity=0.361 Sum_probs=132.3
Q ss_pred CceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEE
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVS 80 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~ 80 (1163)
|+|.+|.|.||+||.+.+ + +|+||+|+|+|||||||||||+||+|||++.. |+....++|+. |...|+|+
T Consensus 1 M~i~~l~l~NF~s~~~~~-i-~f~~gi~~I~G~NGsGKSsileAI~~aL~g~~----~~~~~~~~i~~----~~~~~~V~ 70 (895)
T PRK01156 1 MIIKRIRLKNFLSHDDSE-I-EFDTGINIITGKNGAGKSSIVDAIRFALFTDK----RTEKIEDMIKK----GKNNLEVE 70 (895)
T ss_pred CeEEEEEEeCccCCCCce-E-ecCCCeEEEECCCCCCHHHHHHHHHHHHcCCc----ccccHHHHhhC----CCCeEEEE
Confidence 999999999999998764 4 79999999999999999999999999998653 34456788863 45689999
Q ss_pred EEEecCCCCCCCCCCCCCCeEEEEEEEEeCCc-----eeEEECCeecCH--HHHHHHHH--HcCCCCC--CCceeeeCch
Q 001073 81 IVFDNSDRSRSPLGYEDHPEITVTRQIVVGGR-----NKYLINGKLAQP--SQVQTLFH--SVQLNVN--NPHFLIMQGR 149 (1163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~~~-----~~~~in~~~~~~--~~~~~~~~--~~~~~~~--~~~~~~~Qg~ 149 (1163)
++|..++ ..++|.|.+.+.|. ..|++||+.++. .++..++. -+|++.+ .++.+++||+
T Consensus 71 l~f~~~g-----------~~y~i~R~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~il~~~~~~f~~~i~~~Qg~ 139 (895)
T PRK01156 71 LEFRIGG-----------HVYQIRRSIERRGKGSRREAYIKKDGSIIAEGFDDTTKYIEKNILGISKDVFLNSIFVGQGE 139 (895)
T ss_pred EEEEECC-----------EEEEEEEEEecCCCCCCceEEEecCCeeccccHHHHHHHHHHHHcCCCHHHhceeEEEeccc
Confidence 9998532 46789998865442 346779987663 56777664 3466543 2345789999
Q ss_pred hhHHhcCCchHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhHH
Q 001073 150 ITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVD 193 (1163)
Q Consensus 150 v~~~~~~~p~~~~~~~e~~~g~~~~~~~~~~~~~~l~~~~~~~~ 193 (1163)
+..|+.++|.+|+.+|++++|+..|...++.+...+...+..+.
T Consensus 140 ~~~l~~~~~~~r~~~ld~~~~~~~~~~~~~~~~~~~~~~~~ei~ 183 (895)
T PRK01156 140 MDSLISGDPAQRKKILDEILEINSLERNYDKLKDVIDMLRAEIS 183 (895)
T ss_pred hHHHHhCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998765555444444444333
No 13
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.2e-42 Score=446.17 Aligned_cols=203 Identities=18% Similarity=0.220 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHh
Q 001073 949 KAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLKVTWVKVNKDFGS 1028 (1163)
Q Consensus 949 ~l~~~l~~l~~~~~~l~~~vn~~~~e~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~f~~ 1028 (1163)
.+...+..+..++..+...+.. ..|..+..+|....-++.........|..-...++.-+..-...-...||..+..
T Consensus 1072 ~l~g~~k~le~qi~~l~~eL~e---~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ 1148 (1311)
T TIGR00606 1072 LALGRQKGYEKEIKHFKKELRE---PQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKMEEINKIIRD 1148 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555433321 5677777777777767666666666666666666665555445677788888888
Q ss_pred HHhhhcCCcccc-ccC-CC-CCc-----ccccchhhh-hccc-cccccccccChHHHH------HHHHHHHHHHhccCCC
Q 001073 1029 IFSTLLPGTMAK-LEP-PE-GGN-----FLDGLEVCV-AFGG-VWKQSLSELSGGQRS------LLALSLILALLLFKPA 1092 (1163)
Q Consensus 1029 ~~~~l~~~~~~~-l~~-~~-~~~-----~~~~~~~~~-~~~~-~~~~~~~~lSgGek~------~~~ia~~lal~~~~~~ 1092 (1163)
++...+.|.... +.. ++ ++. ......+.+ .|.| .....++.|||||++ +++||.+|+ .+|
T Consensus 1149 ~w~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~----~~~ 1224 (1311)
T TIGR00606 1149 LWRSTYRGQDIEYIEIRSDADENVSASDKRRNYNYRVVMLKGDTALDMRGRCSAGQKVLASLIIRLALAETFC----LNC 1224 (1311)
T ss_pred HHHHHcCccHHHHhhcCCCCChHHHHHHHcCchHHHhccCCCCeecCCCCCCchhhhhHhhHhHHHHHHHHHh----cCC
Confidence 888888774432 222 11 110 011223333 3333 233456899999999 666666665 688
Q ss_pred CEEEeecCccCCCHHhHHHHHHHHhhh------CCCCeEEEEEeCcchhh------hccceeeeee-eCCceEEEEeec
Q 001073 1093 PLYILDEVDAALDLSHTQNIGRMIKTH------FPHSQFIVVSLKEGMFN------NANVLFRTKF-VDGVSTVQRTVA 1158 (1163)
Q Consensus 1093 p~~~lDE~~~~lD~~~~~~~~~~l~~~------~~~~q~i~it~~~~~~~------~a~~~~gv~~-~~g~S~v~~~~~ 1158 (1163)
||++|||||++||+.+...+...|... ..+.++|||||++.++. .++.+|+|+. .+|.|.|.+.+.
T Consensus 1225 ~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1303 (1311)
T TIGR00606 1225 GIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLKKNEDQCSEIVKCSP 1303 (1311)
T ss_pred CEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeeeeccccCceeEeeCC
Confidence 999999999999999999888877653 23689999999987544 5789999999 569999998754
No 14
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.2e-39 Score=406.15 Aligned_cols=181 Identities=25% Similarity=0.380 Sum_probs=134.2
Q ss_pred CceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEE
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVS 80 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~ 80 (1163)
|+|.+|.|.||.||.+.++.+.|++|+|+|+||||||||||||||+|||+|..+... .....++|+. |...+.|+
T Consensus 1 M~i~~L~L~Nf~S~~~~~~~~~f~~gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~-~~~~~~~i~~----g~~~~~V~ 75 (908)
T COG0419 1 MKILRLRLKNFRSFKDIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTPRLG-AFSLDDLIRA----GEKSASVE 75 (908)
T ss_pred CCCeeeehcccccccccceeecCCCCeEEEECCCCCcHHHHHHHHHHHHcCCCCCcc-chhhhHHHhc----CCccEEEE
Confidence 999999999999999877755599999999999999999999999999987664332 4556678863 44559999
Q ss_pred EEEecCCCCCCCCCCCCCCeEEEEEEEEeCCc------eeEEECCeecC--HHHHHHHHHH-cCCCCC--CCceeeeCch
Q 001073 81 IVFDNSDRSRSPLGYEDHPEITVTRQIVVGGR------NKYLINGKLAQ--PSQVQTLFHS-VQLNVN--NPHFLIMQGR 149 (1163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~~~------~~~~in~~~~~--~~~~~~~~~~-~~~~~~--~~~~~~~Qg~ 149 (1163)
++|.+.| ..+.|.|.+.++++ +.-..+|..+. ..++...+.. +|++.+ -.+.++|||+
T Consensus 76 l~F~~~g-----------~~Y~i~R~~~r~~~~~~~~~~~~~~~g~~~~~~~~~v~~~i~~llgld~~~f~~~v~l~QGe 144 (908)
T COG0419 76 LEFEVNG-----------KKYRIEREFRRGRGQSTGSLQIIEVDGERIADGKKDVNEKIEELLGLDKDTFTRSVYLPQGE 144 (908)
T ss_pred EEEEECC-----------EEEEEEeeeccccCCCccchhhcccCcchhhhhhhhHHHHHHHHhCCCHHHHhHHheeccHh
Confidence 9999543 35578887766444 11233554433 2355555553 366532 3466899999
Q ss_pred hhHHhcCCchHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhHHHHHH
Q 001073 150 ITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINN 197 (1163)
Q Consensus 150 v~~~~~~~p~~~~~~~e~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~ 197 (1163)
++.|+..+|.+|..++.++.|+..|+.....+.......+..+..+..
T Consensus 145 ~~~fl~~~~~er~~il~~l~~l~~~e~~~~~l~e~~~~~~~~~e~l~~ 192 (908)
T COG0419 145 FDAFLKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEG 192 (908)
T ss_pred HHHHHhcCcHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887766666665555555444443
No 15
>PRK04863 mukB cell division protein MukB; Provisional
Probab=100.00 E-value=9.8e-32 Score=340.26 Aligned_cols=63 Identities=21% Similarity=0.126 Sum_probs=56.6
Q ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHH
Q 001073 160 EILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINNLLDQEILPALEKLRKERTQYMQWANGNAE 226 (1163)
Q Consensus 160 ~~~~~~e~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 226 (1163)
+|+.+||+++| |..++.++.+.|..++.++.++.+++ .++..++..|+.+++.+.+|..+..+
T Consensus 280 ERR~liEEAag---~r~rk~eA~kkLe~tE~nL~rI~diL-~ELe~rL~kLEkQaEkA~kyleL~ee 342 (1486)
T PRK04863 280 ERRVHLEEALE---LRRELYTSRRQLAAEQYRLVEMAREL-AELNEAESDLEQDYQAASDHLNLVQT 342 (1486)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888876 44888899999999999999999998 59999999999999999999998775
No 16
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=100.00 E-value=1.1e-31 Score=340.62 Aligned_cols=180 Identities=21% Similarity=0.326 Sum_probs=119.6
Q ss_pred CceeEEEecCccccCCCccccCCC------CCceEEecCCCCchhhHHHHHHHHhCCCcchhhhh-hhhHHHHHhhccCC
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFD------PYFNAITGLNGSGKSNILDSICFVLGITNLQQVRA-SNLQELVYKQGQAG 73 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~------~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~-~~~~~~i~~~~~~~ 73 (1163)
|+|.+|.|.||.||.+...+ +|. .|+++|+||||||||||||||||+||+.++...+. ..+.++++ .+
T Consensus 1 Mk~~~l~~~nf~s~~~~~~i-df~~~~l~~~~l~~I~G~tGaGKStildai~~aLyg~~~r~~~~~~~~~~~~~----~~ 75 (1047)
T PRK10246 1 MKILSLRLKNLNSLKGEWKI-DFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLNNVSQSQNDLMT----RD 75 (1047)
T ss_pred CcceEEEeecceeEcCCceE-EEeeccCCCCCEEEEECCCCCCHHHHHHHHHHHhcCCCCCccccccchhhhhh----CC
Confidence 99999999999999876655 564 68999999999999999999999999877654443 34566664 34
Q ss_pred cceEEEEEEEecCCCCCCCCCCCCCCeEEEEEEE----Ee-CCc------eeEEE-CCeec--CHHHHHHHHH-HcCCCC
Q 001073 74 ITKATVSIVFDNSDRSRSPLGYEDHPEITVTRQI----VV-GGR------NKYLI-NGKLA--QPSQVQTLFH-SVQLNV 138 (1163)
Q Consensus 74 ~~~a~v~~~~~~~~~~~~~~~~~~~~~~~i~r~i----~~-~~~------~~~~i-n~~~~--~~~~~~~~~~-~~~~~~ 138 (1163)
...++|+++|...+.. +.|.|.+ .+ +|. +-|.+ +|..+ ...++...+. -+|++.
T Consensus 76 ~~~~~v~~~F~~~~~~-----------y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~i~~llgl~~ 144 (1047)
T PRK10246 76 TAECLAEVEFEVKGEA-----------YRAFWSQNRARNQPDGNLQAPRVELARCADGKILADKVKDKLELTATLTGLDY 144 (1047)
T ss_pred CcceEEEEEEEECCeE-----------EEEEeehhhcccCCCCccccccceeeEcCCCCeeccCchHHHHHHHHHhCCCH
Confidence 5678899999754322 1222211 00 111 01112 22211 1233333222 236665
Q ss_pred C--CCceeeeCchhhHHhcCCchHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhHHHHH
Q 001073 139 N--NPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEIN 196 (1163)
Q Consensus 139 ~--~~~~~~~Qg~v~~~~~~~p~~~~~~~e~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~ 196 (1163)
+ ..++++|||++..|+.++|.+|..+|++++|+..|..-...+..........+..+.
T Consensus 145 ~~F~~~v~l~QG~f~~fl~a~~~eR~~il~~l~g~~~y~~~~~~l~er~k~~~~~l~~l~ 204 (1047)
T PRK10246 145 GRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQ 204 (1047)
T ss_pred HHhhhheeeccccHHHHHhCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 456689999999999999999999999999999997544444444444444444443
No 17
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.3e-31 Score=341.23 Aligned_cols=181 Identities=20% Similarity=0.265 Sum_probs=122.4
Q ss_pred CceeEEEecCccccCCCccccCCCC--CceEEecCCCCchhhHHHHHHHHhCCCcchhhhhh-hhHHHHHhhccCCcceE
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDP--YFNAITGLNGSGKSNILDSICFVLGITNLQQVRAS-NLQELVYKQGQAGITKA 77 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~--~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~-~~~~~i~~~~~~~~~~a 77 (1163)
|+|++|+|+||+||.+..+| +|++ |+++|+||||||||||||||||||++.++...+.. .+.+.. ..+...+
T Consensus 1 M~~~~L~l~nf~s~~~~~~i-dF~~~~gl~~I~G~nGaGKSTildAI~~aL~G~~~~~~~~~~~~~~~~----~~~~~~~ 75 (1042)
T TIGR00618 1 MKPLRLTLKNFGSYKGTHTI-DFTALGPIFLICGKTGAGKTTLLDAITYALYGKLPRRSEVIRSLNSLY----AAPSEAA 75 (1042)
T ss_pred CeeeEEEEeCeeccCCCcee-eecCCCCeEEEECCCCCCHHHHHHHHHHHhcCCCCCCCccccccchhh----cCCCCCe
Confidence 99999999999999988666 6888 99999999999999999999999987664332221 111111 1234578
Q ss_pred EEEEEEecCCCCCCCCCCCCCCeEEEEEEEE-----eCCceeE---EE----CCeec--CHHHHHHHHHH-cCCCCCC--
Q 001073 78 TVSIVFDNSDRSRSPLGYEDHPEITVTRQIV-----VGGRNKY---LI----NGKLA--QPSQVQTLFHS-VQLNVNN-- 140 (1163)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~~~~~~i~r~i~-----~~~~~~~---~i----n~~~~--~~~~~~~~~~~-~~~~~~~-- 140 (1163)
.|+++|...+. .+.|.|.+. .+|...+ .+ +|..+ ...++...+.. +|++.+.
T Consensus 76 ~v~l~F~~~g~-----------~y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~llGld~~~F~ 144 (1042)
T TIGR00618 76 FAELEFSLGTK-----------IYRVHRTLRCTRSHRKTEQPEQLYLEQKKGRGRILAAKKSETEEVIHDLLKLDYKTFT 144 (1042)
T ss_pred EEEEEEEECCE-----------EEEEEEeeeeeccCCCCcchhhhhhhhcCCCCcccccchHHHHHHHHHHhCCCHHHHh
Confidence 89999975432 223333322 1122111 11 22322 23566665553 5777643
Q ss_pred CceeeeCchhhHHhcCCchHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhHHHHHH
Q 001073 141 PHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINN 197 (1163)
Q Consensus 141 ~~~~~~Qg~v~~~~~~~p~~~~~~~e~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~ 197 (1163)
.++++|||++..|+.++|.+|..+|++++|+..|..-...+..........+..+..
T Consensus 145 ~~~~l~Qg~~~~fl~a~~~eR~~il~~l~g~~~y~~~~~~~~~~~~~~~~~~~~l~~ 201 (1042)
T TIGR00618 145 RVVLLPQGEFAQFLKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTL 201 (1042)
T ss_pred hheeecccchHHHHhCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999999999999999999999999986655555555555444444443
No 18
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=100.00 E-value=4e-25 Score=285.75 Aligned_cols=83 Identities=16% Similarity=0.062 Sum_probs=64.8
Q ss_pred ceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcch-------hhhhhhhHHHHHhhc-cC-
Q 001073 2 YIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQ-------QVRASNLQELVYKQG-QA- 72 (1163)
Q Consensus 2 ~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~-------~~r~~~~~~~i~~~~-~~- 72 (1163)
++.++.|.||--|.+.++ +|++|+|+|+|||||||||+||||.|+|+..+.. ..|+.+|.++++.++ ..
T Consensus 3 ~~~R~gliN~~~~~~~~~--~f~~g~~~~~G~NGsGKS~~lda~~~~ll~~~~~~~rln~~~~~~r~~~~~l~~g~~~~~ 80 (1353)
T TIGR02680 3 RPHRAGLVNLWYYDEQEF--WFRDGRLLLRGNNGAGKSKVLELLLPFLLDGKLRPSRLEPDGDSRKRMAWNLLLGGVNHD 80 (1353)
T ss_pred eeeeEEEEEeccccceEE--ecCCCeEEEECCCCCcHHHHHHHHHHHHhcCCCCccccCCCCCccccHHHHHcCCCCCCC
Confidence 478999999999987654 7999999999999999999999999888765432 347788999998543 12
Q ss_pred -CcceEEEEEEEecC
Q 001073 73 -GITKATVSIVFDNS 86 (1163)
Q Consensus 73 -~~~~a~v~~~~~~~ 86 (1163)
....++|++.+.++
T Consensus 81 ~~~~y~~~e~~~~~~ 95 (1353)
T TIGR02680 81 ERVGYLWLEFGRVED 95 (1353)
T ss_pred CcceeEEEEeeccCC
Confidence 13456677777654
No 19
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=100.00 E-value=3.7e-27 Score=314.69 Aligned_cols=517 Identities=14% Similarity=0.198 Sum_probs=286.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 182 LKTLEKKQSKVDEINNLLDQEILPALEKLRKERTQYMQWANGNAELDRLRRFCIAYEYVQAEKIRDSAVGEVDRIKAKIA 261 (1163)
Q Consensus 182 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 261 (1163)
...+..+..++.++.+.+. ++..++..|+.+.+.+.+|..+..++..+...+..+.|......+..+..++..+..++.
T Consensus 169 ~~~~~~~~~~l~~~~~~l~-el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 247 (1164)
T TIGR02169 169 DRKKEKALEELEEVEENIE-RLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLA 247 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667778888888774 899999999999999999999999999999888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHH-HHHHHHhHHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHH
Q 001073 262 EIDCNTERTRLEIQEMEKQVSNLTAEKEASMGGEVKALS-GKVDALSQDLVREVSVLNNKDDTLRSEKENAEKIVRNIED 340 (1163)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1163)
.+...+..+..++..+..++..+...+. .+...+..+. ..+..+...+..+...+......+.....++..+...+..
T Consensus 248 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 326 (1164)
T TIGR02169 248 SLEEELEKLTEEISELEKRLEEIEQLLE-ELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAK 326 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888877777766655443 2222222222 3333355555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHcccCC-cchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 341 LKQAVEEKVSAVRKCEEGAADLKKKFEELSKGLEENEKEYQGVLAGKSS-GNEEKCLEDQLADAKVTVGSAETELKQLKT 419 (1163)
Q Consensus 341 l~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 419 (1163)
+..++.....+++.+...+..+..++..+...+..++..+..+...+.. ......+...+..++..+..+..++..+..
T Consensus 327 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 406 (1164)
T TIGR02169 327 LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKR 406 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555444444444444444444444444444444444433322211 000112222222233333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 001073 420 KISHCEKELKEKTHQLMSKREEAVSVESELNARRKDVENVKLALE---SDRASEMAMAQKLKDEIRDLSAQLANVQFTYR 496 (1163)
Q Consensus 420 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~---~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~ 496 (1163)
++..+..++..+...+..+...+..+..++..+...+..+...+. .++..+...+..+...+..+...+..+...+.
T Consensus 407 ~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~ 486 (1164)
T TIGR02169 407 ELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELS 486 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333332222111 22222222222222222222222222211111
Q ss_pred CcccccCcCcccccccccccccCCchhHHHHHhhccCc---ccEEEcCcHHHHHHHHccccCCceEEeecCCCCCCCCCh
Q 001073 497 DPVKNFDRAKVKGVVAKLIKVKDSSTMTALEVTAGGKL---FNVIVDTESTGKQLLQNGDLRRRVTIIPLNKIQSHTVPP 573 (1163)
Q Consensus 497 ~~~~~~~~~~~~G~v~~~i~v~~~~~~~aie~~l~~~l---~~vvv~~~~~a~~ll~~~~~~~~~~~~~l~~l~~~~v~~ 573 (1163)
.. ... ..-+......+.++. .++ +.++.. ...+++|+|.++ +.|++
T Consensus 487 ~l-------~~~-----------~~~l~~~~~~~~~~~~~~~~i--------~~~~~~---~~~g~~g~l~dl--i~v~~ 535 (1164)
T TIGR02169 487 KL-------QRE-----------LAEAEAQARASEERVRGGRAV--------EEVLKA---SIQGVHGTVAQL--GSVGE 535 (1164)
T ss_pred HH-------HHH-----------HHHHHHHHHHhhccccchHHH--------HHHHhc---CCCCceecHHHh--cCcCH
Confidence 00 000 001111111222211 222 444432 134677788777 66654
Q ss_pred hhHHHHHhhcCCchhHhhhhccCCChHHHHHHHHhcCCeEEecChHHHHHHHhhcCCCcceeecCCccccCCccccCCCC
Q 001073 574 RVQQAAVRLVGKENAELALSLVGYSDELKTAMEYVFGSTFVCKSIDAAKEVAFSREIRTPSVTLEGDIFQPSGLLTGGSR 653 (1163)
Q Consensus 574 ~~~~~~~~~~~~~~~~~l~d~i~~~~aie~al~~~l~nivv~~~~~~a~~I~~~k~~~~~~vT~~G~~~~~~g~i~gg~~ 653 (1163)
.|..||+.|+|..++++||.++.++..+|.|++..+.|++| |.|+..+.+...
T Consensus 536 ----------------------~y~~Aie~~lg~~l~~ivv~~~~~a~~~i~~l~~~~~gr~t-----flpl~~~~~~~~ 588 (1164)
T TIGR02169 536 ----------------------RYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRAT-----FLPLNKMRDERR 588 (1164)
T ss_pred ----------------------HHHHHHHHHhhhhhCCEEECCHHHHHHHHHHHHhcCCCCee-----eccHhhcCCCCC
Confidence 78899999999999999888888888999999988899999 999987764321
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH----------H---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 001073 654 RGGGDLLRQLHRLAAVESNLVIHQKRLSEIEAK----------I---KELLPFQKKYMDLKAQLELKLYDLSLFQGRAEQ 720 (1163)
Q Consensus 654 ~~~~~~l~~~~~~~~l~~~l~~~~~~~~~i~~~----------i---~~~~~~~~~i~~l~~~~~~~~~~~~~~~g~~~~ 720 (1163)
+.. +...++..+.+.+++.+++.+..+... + .++.+ ..++||++|++ ++++|.++||...
T Consensus 589 ~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~lg~~~v~~~l~~a~~~~~-~~~~vTldG~~---~~~~G~~tgG~~~ 661 (1164)
T TIGR02169 589 DLS---ILSEDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAARRLMG-KYRMVTLEGEL---FEKSGAMTGGSRA 661 (1164)
T ss_pred Ccc---cccCCCchHHHHHHccCcHHHHHHHHHHCCCeEEEcCHHHHHHHhc-CCcEEEeCcee---EcCCcCccCCCCC
Confidence 111 111133444556777777777766551 1 11111 45789999999 9999999999622
Q ss_pred hhh-hhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 721 NEH-HKL----SEIVKKIEQELEEAKSSAKEKQLLYENSVSAVSVLEKSI 765 (1163)
Q Consensus 721 ~~~-~~l----~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~i 765 (1163)
... ..+ ..++..+..++..+...+..+...+..+...+..+...+
T Consensus 662 ~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~ 711 (1164)
T TIGR02169 662 PRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQEL 711 (1164)
T ss_pred CCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 111 345666666666666666666666666655555555444
No 20
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=100.00 E-value=5.6e-27 Score=302.50 Aligned_cols=651 Identities=17% Similarity=0.254 Sum_probs=351.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 182 LKTLEKKQSKVDEINNLLDQEILPALEKLRKERTQYMQWANGNAELDRLRRFCIAYEYVQAEKIRDSAVGEVDRIKAKIA 261 (1163)
Q Consensus 182 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 261 (1163)
......+...+.+....+. .+..-+..++.+.+.+..-...-.+...++..+...++.....++..+..++..+...+.
T Consensus 171 ~~r~~ea~~~L~~~~~nl~-~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 249 (1163)
T COG1196 171 KERKEEAERKLERTEENLE-RLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELS 249 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556666655554 466666666666665555444444455555555556666666677777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHH
Q 001073 262 EIDCNTERTRLEIQEMEKQVSNLTAEKEASMGGEVKALSGKVDALSQDLVREVSVLNNKDDTLRSEKENAEKIVRNIEDL 341 (1163)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 341 (1163)
.+...+..+...+......+..+..+ +.++......++.....+...+..+..++.....++.........+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~ 321 (1163)
T COG1196 250 RLEEELEELQEELEEAEKEIEELKSE--------LEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEEL 321 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777766666544 4455555555555555555555566666666666666555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 342 KQAVEEKVSAVRKCEEGAADLKKKFEELSKGLEENEKEYQGVLAGKSSGNEEKCLEDQLADAKVTVGSAETELKQLKTKI 421 (1163)
Q Consensus 342 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 421 (1163)
...+.....++......+.........+......+............. ........+..++..+..+..+.....+++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 399 (1163)
T COG1196 322 EERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSA--LLEELEELFEALREELAELEAELAEIRNEL 399 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554444444443222222222222222222222221110 012233444455555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-------HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001073 422 SHCEKELKEKTHQLMSKREEAVSVESELNARRKDVENVKLAL---E-------SDRASEMAMAQKLKDEIRDLSAQLANV 491 (1163)
Q Consensus 422 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l---~-------~~~~~l~~~~~~~~~~l~~l~~~~~~~ 491 (1163)
..++.++..+..++..+......+..++..+..++..+...+ . ..+..+...+..+...+.+++..+..+
T Consensus 400 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1163)
T COG1196 400 EELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRL 479 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555544444333211 1 222233333333333333333333222
Q ss_pred cccccCcccccCcCcccccccccccccCCchhHHHHHhhccCcccEEEcCcHHHHHHHHccccCCceEEeecCCCCCCCC
Q 001073 492 QFTYRDPVKNFDRAKVKGVVAKLIKVKDSSTMTALEVTAGGKLFNVIVDTESTGKQLLQNGDLRRRVTIIPLNKIQSHTV 571 (1163)
Q Consensus 492 ~~~~~~~~~~~~~~~~~G~v~~~i~v~~~~~~~aie~~l~~~l~~vvv~~~~~a~~ll~~~~~~~~~~~~~l~~l~~~~v 571 (1163)
...++. . ......+++.... ..++ ..++........|++|||.++ +.|
T Consensus 480 ~~~l~~---------~------------~~~~~~l~~~~~~-~~~~--------~~~~~~~~~~~~Gv~G~v~~l--i~v 527 (1163)
T COG1196 480 EKELSS---------L------------EARLDRLEAEQRA-SQGV--------RAVLEALESGLPGVYGPVAEL--IKV 527 (1163)
T ss_pred HHHHHH---------H------------HHHHHHHHHHhhh-hhhH--------HHHHHHHhccCCCccchHHHh--cCc
Confidence 111110 0 0122333333222 2233 444433222256788888887 666
Q ss_pred ChhhHHHHHhhcCCchhHhhhhccCCChHHHHHHHHhcCCeEEecChHHHHHHHhhcCCCcceeecCCccccCCccccCC
Q 001073 572 PPRVQQAAVRLVGKENAELALSLVGYSDELKTAMEYVFGSTFVCKSIDAAKEVAFSREIRTPSVTLEGDIFQPSGLLTGG 651 (1163)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~l~d~i~~~~aie~al~~~l~nivv~~~~~~a~~I~~~k~~~~~~vT~~G~~~~~~g~i~gg 651 (1163)
++ +|..||+.|+|+.++++||.++..+..+|.|++..+.|++| |.|.+.|.+.
T Consensus 528 ~~----------------------~y~~Aie~alG~~l~~vVV~~~~~a~~~i~~lk~~~~gr~t-----flpl~~i~~~ 580 (1163)
T COG1196 528 KE----------------------KYETALEAALGNRLQAVVVENEEVAKKAIEFLKENKAGRAT-----FLPLDRIKPL 580 (1163)
T ss_pred Ch----------------------HHHHHHHHHcccccCCeeeCChHHHHHHHHHHhhcCCCccc-----cCchhhhccc
Confidence 54 78999999999999999999999999999999999999999 9999999865
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 001073 652 SRRGGGDLLRQLHRLAAVESNLVIHQKRLSEIEA----------------KIKELLPFQKKYMDLKAQLELKLYDLSLFQ 715 (1163)
Q Consensus 652 ~~~~~~~~l~~~~~~~~l~~~l~~~~~~~~~i~~----------------~i~~~~~~~~~i~~l~~~~~~~~~~~~~~~ 715 (1163)
...... . .+|+.+++.+++.++++|..+.. .+.....+..++||++|++ ..++|+++
T Consensus 581 ~~~~~~--~--~~g~~~~a~dli~~d~~~~~~~~~~l~~t~Iv~~l~~A~~l~~~~~~~~riVTl~G~~---~~~~G~~t 653 (1163)
T COG1196 581 RSLKSD--A--APGFLGLASDLIDFDPKYEPAVRFVLGDTLVVDDLEQARRLARKLRIKYRIVTLDGDL---VEPSGSIT 653 (1163)
T ss_pred cccccc--c--ccchhHHHHHHhcCCHHHHHHHHHHhCCeEEecCHHHHHHHHHhcCCCceEEecCCcE---EeCCeeee
Confidence 432111 1 78899999999999999998776 2333333456899999999 99999999
Q ss_pred HHhhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhHHHHHHHHHHHHHHHH
Q 001073 716 GRAEQNEHHKL-SEIVKKIEQELEEAKSSAKEKQLLYENSVSAVSVLEKSIKEHDN---NREGRLKDLEKKIKAIKVQIQ 791 (1163)
Q Consensus 716 g~~~~~~~~~l-~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~---~~~~~~~~l~~~~~~~~~~~~ 791 (1163)
||......+.. ..++..+..++..+...+..+...+..+...+..+...+.+... .....+..+...+..+..+..
T Consensus 654 GG~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1163)
T COG1196 654 GGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELE 733 (1163)
T ss_pred cCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99533222211 23455566666666666666666666666655555554433321 112233333333343444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 792 SASKDLKGHENERERLVMEHEAIVKEHASLENQLASVRMQINGLTSEVEEQKNKVAFTRTNHDQAQSELNAIRLKMKECD 871 (1163)
Q Consensus 792 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~ 871 (1163)
.+...+..+..++..+......+...+..+...+..+......+...+..+..........+..+..++...+..+..+.
T Consensus 734 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1163)
T COG1196 734 QLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALE 813 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444443333333444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 872 SQISGILKEQQKLQDKLGEAKLERKRLENEVKRMEMEQ 909 (1163)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 909 (1163)
.++.........+..++..+..++..+...+..+...+
T Consensus 814 ~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~ 851 (1163)
T COG1196 814 RELESLEQRRERLEQEIEELEEEIEELEEKLDELEEEL 851 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44444444433343444443333333333333333333
No 21
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=100.00 E-value=7e-32 Score=285.61 Aligned_cols=134 Identities=37% Similarity=0.597 Sum_probs=105.6
Q ss_pred ceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHh-hccCCcceEEEE
Q 001073 2 YIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYK-QGQAGITKATVS 80 (1163)
Q Consensus 2 ~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~-~~~~~~~~a~v~ 80 (1163)
||.+|+|.||+||.+.....+|+|++|+|+||||||||||++||+|+||+.+.+.+|.+.+.++|+. +.......|.|+
T Consensus 1 ~I~~l~i~nFr~~~~~~~~~~~~~~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~ 80 (220)
T PF02463_consen 1 MIKSLEIENFRNFKGKNAELSFSPGLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVE 80 (220)
T ss_dssp EEEEEEEESBTTC-SCEEEEETTSSEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEE
T ss_pred CccEEEEcCceEEecCeEEEecCCCCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Confidence 7999999999999744444479999999999999999999999999999888888999999999986 333456789999
Q ss_pred EEEecCCCCCCCCCCCCCCeEEEEEEEEeCCceeEEECCeecCHHHHHHHHHHcCCCCC
Q 001073 81 IVFDNSDRSRSPLGYEDHPEITVTRQIVVGGRNKYLINGKLAQPSQVQTLFHSVQLNVN 139 (1163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~~~~~~~in~~~~~~~~~~~~~~~~~~~~~ 139 (1163)
+.|++.+.. .+. ..+.+.|.|.+.+.+.+.|+|||++++.+++..++...++.++
T Consensus 81 ~~~~~~~~~-~~~---~~~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~~ 135 (220)
T PF02463_consen 81 LIFDNSDEE-FEL---DKKEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISPE 135 (220)
T ss_dssp EEEECTTEE-SSS---SSSEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTTT
T ss_pred ccccccccc-ccc---ccccccccccccccccccccccccccccccccccccccccccc
Confidence 999876543 111 2467899999998888999999999999999999988777653
No 22
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=99.97 E-value=1.9e-22 Score=241.80 Aligned_cols=160 Identities=16% Similarity=0.298 Sum_probs=106.8
Q ss_pred ceeEEEecCccccCCC--ccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCc--ceE
Q 001073 2 YIKEICLEGFKSYASR--TVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGI--TKA 77 (1163)
Q Consensus 2 ~i~~i~l~nFks~~~~--~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~--~~a 77 (1163)
.|.++-|.|-.||++. .+| .|...+|+||||||||||||+.++.++.-|..|.+.++ ..|||...-.|+ ..|
T Consensus 3 ~i~klsI~GIRSf~~~d~~~i-~F~sPlTLIvG~NG~GKTTiIEcLKyatTG~lPpnsk~---~~FiHdpkIage~ev~A 78 (1294)
T KOG0962|consen 3 SIDKLSIRGIRSFDDKDRNTI-EFFSPLTLIVGANGTGKTTIIECLKYATTGELPPNSKG---GSFIHDPKVAGETEVRA 78 (1294)
T ss_pred hhHhhHhhcccccCCccccee-eecCCeeeEecCCCCCchhHHHHHHHHhcCcCCCCCcC---CCCCCCccccchhhhhh
Confidence 3677888888999854 466 45555999999999999999999999996655566665 356764322343 367
Q ss_pred EEEEEEecCCCCCCCCCCCCCCeEEEEEEEEeC-----------CceeEEE-CCeecCH----HHHHHHHH-HcCCC--C
Q 001073 78 TVSIVFDNSDRSRSPLGYEDHPEITVTRQIVVG-----------GRNKYLI-NGKLAQP----SQVQTLFH-SVQLN--V 138 (1163)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~-----------~~~~~~i-n~~~~~~----~~~~~~~~-~~~~~--~ 138 (1163)
.|.+-|.+.++ ..+++.|.+.-. .+--+.+ .|..+++ .++-..+. .+|.. +
T Consensus 79 qvkL~f~~~~G----------~~~~~~R~~qlt~k~~~~~~ktles~~~~~~~g~k~tlS~r~~d~d~~~~~~lGVskAI 148 (1294)
T KOG0962|consen 79 QVKLAFTDVNG----------ETMICTRTIQLTQKRTKMEFKTLESVIWAINDGDRVTLSGRSADLDAEMPLHLGVSKAI 148 (1294)
T ss_pred eeeeeeecCCC----------cEEEeehhhHHHHHHHHHHHHHHhhhheeeecCccccccchhhhhhHHHHHhcCCcHHH
Confidence 88888876533 466777766321 0112333 3544443 24444433 44655 3
Q ss_pred CCCceeeeCchhhHHhcCCchHHHHHHHHHhchhhhHH
Q 001073 139 NNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYET 176 (1163)
Q Consensus 139 ~~~~~~~~Qg~v~~~~~~~p~~~~~~~e~~~g~~~~~~ 176 (1163)
-|++.|+-|.+-..-+ ..|..+..-|+++.+...|-.
T Consensus 149 l~~VIFcHQEdS~WPL-sEp~~LKkkfD~IF~~tky~K 185 (1294)
T KOG0962|consen 149 LENVIFCHQEDSTWPL-SEPKNLKKKFDDIFSATKYTK 185 (1294)
T ss_pred HhhhheecccCCCCCC-CChHHHHHHHHHHHHHHHHHH
Confidence 4667777787766655 379999999999999888854
No 23
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.97 E-value=4.2e-23 Score=276.94 Aligned_cols=197 Identities=16% Similarity=0.267 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHHHHHHHhhhhhhhHhhHHH
Q 001073 248 SAVGEVDRIKAKIAEIDCNTERTRLEIQEMEKQVSNLTAEKEASMGGEVKALSGKVDALSQDLVREVSVLNNKDDTLRSE 327 (1163)
Q Consensus 248 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~ 327 (1163)
.+..++..+...+..+...+.....++..+..++..++.. +..+...+..+...+..+...+..+...+...
T Consensus 229 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~ 300 (1179)
T TIGR02168 229 LLVLRLEELREELEELQEELKEAEEELEELTAELQELEEK--------LEELRLEVSELEEEIEELQKELYALANEISRL 300 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555444433 34444444444444444444555555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHcccCC-cchhhhHHHHHHHHHHH
Q 001073 328 KENAEKIVRNIEDLKQAVEEKVSAVRKCEEGAADLKKKFEELSKGLEENEKEYQGVLAGKSS-GNEEKCLEDQLADAKVT 406 (1163)
Q Consensus 328 ~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~i~~~~~~ 406 (1163)
..++..+...+..+..++.....++..+...+..+...+..+...+..+...+..+...+.. ......+...+...+..
T Consensus 301 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 380 (1179)
T TIGR02168 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQ 380 (1179)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554444444444444444444444444444444444444444444433333322211 01112233334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 407 VGSAETELKQLKTKISHCEKELKEKTHQLMSKREEAVSVESELNAR 452 (1163)
Q Consensus 407 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 452 (1163)
+..+..++..+..++..+...+..+..++..+..++..+..++..+
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~ 426 (1179)
T TIGR02168 381 LETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEL 426 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555444444444444444444444433333
No 24
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.95 E-value=9e-25 Score=266.09 Aligned_cols=178 Identities=17% Similarity=0.279 Sum_probs=130.8
Q ss_pred CceeEEEecCccccCCCc-cccCCC-CCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEE
Q 001073 1 MYIKEICLEGFKSYASRT-VVPGFD-PYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKAT 78 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~-~~~~~~-~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~ 78 (1163)
|+|++|+|+||+||++.+ .+ +|+ +|+|+|+||||||||||++||+||||+.+....+ ..+++... +...+.
T Consensus 2 ~~~~~l~l~nf~s~~~~~~~i-~f~~~g~~~i~G~NG~GKStll~aI~~~l~G~~~~~~~---~~~~~~~~---~~~~~~ 74 (562)
T PHA02562 2 LKFKKIRYKNILSVGNQPIEI-QLDKVKKTLITGKNGAGKSTMLEALTFALFGKPFRDIK---KGQLINSI---NKKDLL 74 (562)
T ss_pred ceEEEEEEEcccccCCCceEE-EEcCCCEEEEECCCCCCHHHHHHHHHHHHcCCCcCcCC---HHHhhccC---CCCcEE
Confidence 789999999999999753 44 687 5999999999999999999999999876643322 34555321 234688
Q ss_pred EEEEEecCCCCCCCCCCCCCCeEEEEEEEEeCCceeEEECCeec----CHHHHHHHHHH-cCCCCCC--CceeeeCchhh
Q 001073 79 VSIVFDNSDRSRSPLGYEDHPEITVTRQIVVGGRNKYLINGKLA----QPSQVQTLFHS-VQLNVNN--PHFLIMQGRIT 151 (1163)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~~~~~~~in~~~~----~~~~~~~~~~~-~~~~~~~--~~~~~~Qg~v~ 151 (1163)
|+++|...+ ..+.|.|.+. .+...+++||.++ +..++...+.. +|++... ...++|||.+.
T Consensus 75 v~l~f~~~~-----------~~y~i~R~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~f~~~v~l~q~~f~ 142 (562)
T PHA02562 75 VELWFEYGE-----------KEYYIKRGIK-PNVFEIYCNGKLLDESASSKDFQKYFEQMLGMNYKSFKQIVVLGTAGYV 142 (562)
T ss_pred EEEEEEECC-----------EEEEEEEecc-CCeEEEecCCEEEeccccHHHHHHHHHHHHCCCHHHHhHHheeccCchh
Confidence 999997532 4567888764 3345567788764 45788877776 3544322 12368999999
Q ss_pred HHhcCCchHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhHHHHHH
Q 001073 152 KVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINN 197 (1163)
Q Consensus 152 ~~~~~~p~~~~~~~e~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~ 197 (1163)
.|..++|.++..+++++.|+..|..-.......+...+..+..+..
T Consensus 143 ~f~~~~~~er~~il~~l~~~~~~~~~~~~~k~~~~e~~~~i~~l~~ 188 (562)
T PHA02562 143 PFMQLSAPARRKLVEDLLDISVLSEMDKLNKDKIRELNQQIQTLDM 188 (562)
T ss_pred hHhcCChHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998876555555555555555554443
No 25
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.1e-20 Score=220.11 Aligned_cols=427 Identities=15% Similarity=0.148 Sum_probs=213.2
Q ss_pred HHHHHhHHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 302 KVDALSQDLVREVSVLNNKDDTLRSEKENAEKIVRNIEDLKQAVEEKVSAVRKCEEGAADLKKKFEELSKGLEENEKEYQ 381 (1163)
Q Consensus 302 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 381 (1163)
....+..++..+..+-...+..++....++..+.++++.....+.++....+.....++.+..++..+.......+..+.
T Consensus 385 ~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~ 464 (1293)
T KOG0996|consen 385 KFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD 464 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444445555555555555555555555554
Q ss_pred hHHcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 382 GVLAGKSSGNEEKCLEDQLADAKVTVGSAETELKQLKTKISHCEKELKEKTHQLMSKREEAVSVESELNARRKDVENVKL 461 (1163)
Q Consensus 382 ~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 461 (1163)
+....+... ...+..++...+..+..+..+....+.++.-.+.++.-+..........+..++..+......+.+...
T Consensus 465 e~~~~l~~~--t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~ 542 (1293)
T KOG0996|consen 465 EILDSLKQE--TEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKT 542 (1293)
T ss_pred HHHHHHhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433221 234566666677777777777777776666666666666655555555555555555555554444443
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHhhcccccccCcccccCcCcccccccccccccCCchhHHHHHhhccCcccEE
Q 001073 462 ALE---SDRASEMAMAQKLKDEIRDLSAQLANVQFTYRDPVKNFDRAKVKGVVAKLIKVKDSSTMTALEVTAGGKLFNVI 538 (1163)
Q Consensus 462 ~l~---~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~G~v~~~i~v~~~~~~~aie~~l~~~l~~vv 538 (1163)
.+. ..+..+..++.+....+..+.....++....+..+.. +- .+-..+..+- .....+
T Consensus 543 ~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqr-----ve------------E~ks~~~~~~-s~~kVl- 603 (1293)
T KOG0996|consen 543 ELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQR-----VE------------EAKSSLSSSR-SRNKVL- 603 (1293)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----HH------------HHHHHHHhhh-hhhHHH-
Confidence 222 3333444444444444444444433322221111000 00 0111111110 001111
Q ss_pred EcCcHHHHHHHHccccC-CceEEeecCCCCCCCCChhhHHHHHhhcCCchhHhhhhccCCChHHHHHHHHhcCCeEEecC
Q 001073 539 VDTESTGKQLLQNGDLR-RRVTIIPLNKIQSHTVPPRVQQAAVRLVGKENAELALSLVGYSDELKTAMEYVFGSTFVCKS 617 (1163)
Q Consensus 539 v~~~~~a~~ll~~~~~~-~~~~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~l~d~i~~~~aie~al~~~l~nivv~~~ 617 (1163)
..+++..... .+|++|-|++| ..+++ .|+.||.+| +..+.++||.+.
T Consensus 604 -------~al~r~kesG~i~Gf~GRLGDL--g~Id~----------------------kYDvAIsTa-c~~LdyiVVdt~ 651 (1293)
T KOG0996|consen 604 -------DALMRLKESGRIPGFYGRLGDL--GAIDE----------------------KYDVAISTA-CARLDYIVVDTI 651 (1293)
T ss_pred -------HHHHHHHHcCCCCccccccccc--cccch----------------------HHHHHHHHh-ccccceEEeccH
Confidence 3333221111 46778888887 44443 788888874 444555555555
Q ss_pred hHHHHHHHhhcCCCcceeecCCccccCCcccc-----CCCCC--CCCChhHHHHHHHHHHHHHHHHH-H----HHHHHHH
Q 001073 618 IDAAKEVAFSREIRTPSVTLEGDIFQPSGLLT-----GGSRR--GGGDLLRQLHRLAAVESNLVIHQ-K----RLSEIEA 685 (1163)
Q Consensus 618 ~~~a~~I~~~k~~~~~~vT~~G~~~~~~g~i~-----gg~~~--~~~~~l~~~~~~~~l~~~l~~~~-~----~~~~i~~ 685 (1163)
..+..+|.|++.+++||+| |.+++-++ +.... .+.+++- +|+.|. + .|..+..
T Consensus 652 e~aq~cI~fl~~~nLgraT-----Fi~LDki~~~~~~l~~i~tpenvPRLf----------DLv~~~d~~~r~aFYfaLr 716 (1293)
T KOG0996|consen 652 ETAQECINFLKKNNLGRAT-----FIILDKIKDHQKKLAPITTPENVPRLF----------DLVKCKDEKFRPAFYFALR 716 (1293)
T ss_pred HHHHHHHHHHHHcCCCcee-----EEehHhhhhhhhccCCCCCCCCcchHh----------hhhccCCHHHHHHHHHHHh
Confidence 5566799999999999999 98888776 22211 1111111 122221 1 1111111
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh----hhhhh------hHHHHHHHHHHHHHHHHH
Q 001073 686 ------------KIKELLPFQKKYMDLKAQLELKLYDLSLFQGRAEQ----NEHHK------LSEIVKKIEQELEEAKSS 743 (1163)
Q Consensus 686 ------------~i~~~~~~~~~i~~l~~~~~~~~~~~~~~~g~~~~----~~~~~------l~~~i~~l~~~l~~l~~~ 743 (1163)
.|+.-...+.|+|||+|.+ +...|.||||... +..+. -......++.++......
T Consensus 717 dtLV~d~LeQAtRiaygk~rr~RVvTL~G~l---Ie~SGtmtGGG~~v~~g~mg~~~~~t~~s~~~v~~le~~l~~~~~~ 793 (1293)
T KOG0996|consen 717 DTLVADNLEQATRIAYGKDRRWRVVTLDGSL---IEKSGTMTGGGKKVKGGRMGTSIRVTGVSKESVEKLERALSKMSDK 793 (1293)
T ss_pred hhhhhcCHHHHHHHhhcCCCceEEEEeccee---ecccccccCCCCcCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHH
Confidence 3444444457899999999 9999999999521 10111 134555666666666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 744 AKEKQLLYENSVSAVSVLEKSIKEHDNNREGRLKDLEKKIKAIKVQIQSASKDLKGHENE 803 (1163)
Q Consensus 744 ~~~l~~~l~~~~~~~~~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 803 (1163)
...+..++..++..+..+...+..+. .++..+....+.+...++.++.++..++..
T Consensus 794 ~~~~~~~~~~~ee~~~~lr~~~~~l~----~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~ 849 (1293)
T KOG0996|consen 794 ARQHQEQLHELEERVRKLRERIPELE----NRLEKLTASVKRLAELIEYLESQIAELEAA 849 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555544443332 233344444444444444444444444333
No 26
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=4.8e-26 Score=244.95 Aligned_cols=157 Identities=80% Similarity=1.207 Sum_probs=135.4
Q ss_pred CceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEE
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVS 80 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~ 80 (1163)
|+|++|.+.|||||.+.+++++|+|++|+||||||||||||++||+|+||+..+...|.....++|+.++..+...+.|+
T Consensus 1 m~i~~~~~~~f~~~~~~~~~~~~~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~ 80 (251)
T cd03273 1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVT 80 (251)
T ss_pred CEeeEEEEeCccccCcCEeeccCCCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEE
Confidence 99999999999999998877679999999999999999999999999999866667888888899975544455688999
Q ss_pred EEEecCCCCCCCCCCCCCCeEEEEEEEEeCCceeEEECCeecCHHHHHHHHHHcCCCCCCCceeeeCchhhHHhcCC
Q 001073 81 IVFDNSDRSRSPLGYEDHPEITVTRQIVVGGRNKYLINGKLAQPSQVQTLFHSVQLNVNNPHFLIMQGRITKVLNMK 157 (1163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~~~~~~~in~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qg~v~~~~~~~ 157 (1163)
++|+|++....|.++...+.++|.|++...+...|++||+.....++.++|..+|+.+++++|+|+||+|.+|+.+.
T Consensus 81 ~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~ 157 (251)
T cd03273 81 IVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMG 157 (251)
T ss_pred EEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhH
Confidence 99998765433444444578999999987666778899998888999999999999999999999999999999874
No 27
>PRK10869 recombination and repair protein; Provisional
Probab=99.93 E-value=3.5e-23 Score=243.64 Aligned_cols=173 Identities=23% Similarity=0.316 Sum_probs=132.5
Q ss_pred ceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEEE
Q 001073 2 YIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSI 81 (1163)
Q Consensus 2 ~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~~ 81 (1163)
+|.+|.|+||++|...+ + +|+||+|+|+||||||||+|++||+|+||+++. +++|+ .|...|.|++
T Consensus 1 ML~~L~I~nf~~i~~~~-i-~f~~glnvitGetGaGKS~ildAi~~llG~r~~--------~~~ir----~g~~~a~Ve~ 66 (553)
T PRK10869 1 MLAQLTISNFAIVRELE-I-DFQSGMTVITGETGAGKSIAIDALGLCLGGRAE--------ASMVR----PGATRADLCA 66 (553)
T ss_pred CccEEEEcccccceeeE-E-ecCCCcEEEECCCCCChHHHHHHHHHHhCCCcc--------ccccc----CCCCcEEEEE
Confidence 57899999999997654 3 799999999999999999999999999996432 35664 4677899999
Q ss_pred EEecCCCCCC-----CCCCCCCCeEEEEEEEEeCCceeEEECCeecCHHHHHHHHHHcCCCCCCCceeeeCchhhHHhcC
Q 001073 82 VFDNSDRSRS-----PLGYEDHPEITVTRQIVVGGRNKYLINGKLAQPSQVQTLFHSVQLNVNNPHFLIMQGRITKVLNM 156 (1163)
Q Consensus 82 ~~~~~~~~~~-----~~~~~~~~~~~i~r~i~~~~~~~~~in~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qg~v~~~~~~ 156 (1163)
+|+..+.... ..++...+.++|+|.+.++|++.|+|||++++..++.++...+ +-.+|+......|
T Consensus 67 ~F~~~~~~~~~~~l~~~~~~~~~~~~i~R~i~~~g~s~~~INg~~v~~~~l~~l~~~l---------i~ihgQ~~~~~ll 137 (553)
T PRK10869 67 RFSLKDTPAALRWLEDNQLEDGNECLLRRVISSDGRSRGFINGTPVPLSQLRELGQLL---------IQIHGQHAHQLLL 137 (553)
T ss_pred EEecCCChHHHHHHHhcCCCCCCeEEEEEEEecCCcceEEECCeeccHHHHHHHHHhh---------hheeCcChHHHhc
Confidence 9986432100 1112224579999999999999999999999999999997542 2234444556668
Q ss_pred CchHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhHHHHHH
Q 001073 157 KPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINN 197 (1163)
Q Consensus 157 ~p~~~~~~~e~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~ 197 (1163)
+|..++.+++.++|...+...+..+...+..+...+.++..
T Consensus 138 ~~~~~~~lLD~~~~~~~~~~~~~~~y~~~~~~~~~l~~l~~ 178 (553)
T PRK10869 138 KPEHQKTLLDAYANETSLLQEMRAAYQLWHQSCRDLAQHQQ 178 (553)
T ss_pred CHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999766666666677777666666655543
No 28
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.93 E-value=6.3e-23 Score=245.08 Aligned_cols=171 Identities=22% Similarity=0.332 Sum_probs=134.7
Q ss_pred ceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEEE
Q 001073 2 YIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSI 81 (1163)
Q Consensus 2 ~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~~ 81 (1163)
+|.+|.|.||++|...++ +|+||+|+|+|||||||||||+||+|+||++. ..++|. .|...+.|++
T Consensus 1 Ml~~l~i~nf~~~~~~~i--~f~~g~~vitG~nGaGKS~ll~al~~~~g~~~--------~~~~i~----~~~~~~~v~~ 66 (563)
T TIGR00634 1 MLTELRINNFALIRVLTV--EFERGLTVLTGETGAGKSMIIDALSLLGGQRA--------GASRVR----SGENRAVVEG 66 (563)
T ss_pred CceEEEEcceeeeeeeEE--ecCCCeEEEECCCCCCHHHHHHHHHHHhCcCc--------hHHHhc----CCCCeEEEEE
Confidence 588999999999977654 79999999999999999999999999999753 246775 3567899999
Q ss_pred EEecCCCCC------CCCCCC-C--CCeEEEEEEEEeCCceeEEECCeecCHHHHHHHHHHcCCCCCCCceeeeCchhhH
Q 001073 82 VFDNSDRSR------SPLGYE-D--HPEITVTRQIVVGGRNKYLINGKLAQPSQVQTLFHSVQLNVNNPHFLIMQGRITK 152 (1163)
Q Consensus 82 ~~~~~~~~~------~~~~~~-~--~~~~~i~r~i~~~~~~~~~in~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qg~v~~ 152 (1163)
+|++++... ...++. . .+.++|+|.|+.+|+|.|+|||++|+...+.+++ .+++..||+++.
T Consensus 67 ~f~~~~~~~~~~~~l~~~~~~~~~~~~~~ii~R~i~~~grs~~~iNg~~v~~~~l~~l~---------~~li~i~gQ~~~ 137 (563)
T TIGR00634 67 RFTTESLDDADYPALQAIELEEEDEDGEVILRRSISRDGRSRAYLNGKPVSASSLLEFT---------SELLDLHGQHDQ 137 (563)
T ss_pred EEccCCCchHHHHHHHhcCCCcCCCCCeEEEEEEEcCCCceEEEECCEEccHHHHHHHh---------cCeEEEECchHH
Confidence 998644210 001111 1 3578999999999999999999999999999997 234667999999
Q ss_pred HhcCCchHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhHHHH
Q 001073 153 VLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEI 195 (1163)
Q Consensus 153 ~~~~~p~~~~~~~e~~~g~~~~~~~~~~~~~~l~~~~~~~~~~ 195 (1163)
+..++|..++.++++++|+..+...+..+...+......+.++
T Consensus 138 ~~l~~~~~~~~lLD~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 180 (563)
T TIGR00634 138 QLLFRPDEQRQLLDTFAGANEKVKAYRELYQAWLKARQQLKDR 180 (563)
T ss_pred HHhcCHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997666555555666665555555444
No 29
>PF13514 AAA_27: AAA domain
Probab=99.92 E-value=1.6e-17 Score=214.89 Aligned_cols=120 Identities=27% Similarity=0.298 Sum_probs=90.7
Q ss_pred HhhhhHHhHHhhhcCCccccccCCCCCcccccchhhhhccccccccccccChHHHHHHHHHHHHHHhccC---CCCE-EE
Q 001073 1021 KVNKDFGSIFSTLLPGTMAKLEPPEGGNFLDGLEVCVAFGGVWKQSLSELSGGQRSLLALSLILALLLFK---PAPL-YI 1096 (1163)
Q Consensus 1021 ~~~~~f~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~---~~p~-~~ 1096 (1163)
.|....+.+|..|+.|.+..+.... +....+.+.+..+|. ..++..||+|-+-=+-||+.||+.... ..|+ +|
T Consensus 980 ~vl~~As~~f~~LT~G~Y~~l~~d~--d~~~~~l~~~~~~G~-~~~~~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~I 1056 (1111)
T PF13514_consen 980 PVLARASEYFSRLTGGRYSRLRVDE--DGDKPVLVVVRADGE-RVPVEELSRGTRDQLYLALRLALAELLAEQGEPLPFI 1056 (1111)
T ss_pred HHHHHHHHHHHHHhCCCCceeeecc--ccCcccceEEecCCe-EeeHHHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcEE
Confidence 4556677899999988776554322 111112222334454 357999999999999999999985322 3344 66
Q ss_pred eecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceee
Q 001073 1097 LDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFR 1143 (1163)
Q Consensus 1097 lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~g 1143 (1163)
+|+|..+.|+.....++.+|.+++..+|+|+.||.+.++..|..+||
T Consensus 1057 lDD~fvnfDd~R~~~~l~~L~~ls~~~QVI~FTch~~l~~~a~~~~~ 1103 (1111)
T PF13514_consen 1057 LDDIFVNFDDERARAALELLAELSRRRQVIYFTCHEHLVELAREVFG 1103 (1111)
T ss_pred eeCCccccCHHHHHHHHHHHHHhccCCeEEEEeccHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999887765
No 30
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=1.2e-17 Score=190.61 Aligned_cols=107 Identities=11% Similarity=0.102 Sum_probs=59.8
Q ss_pred CChHHHHHHHHhcCCeEEecChHHHHHHHhhcCCCcceeecCCccccCCccccCCCCCCC--CChhHHHHHHHHHHHHHH
Q 001073 597 YSDELKTAMEYVFGSTFVCKSIDAAKEVAFSREIRTPSVTLEGDIFQPSGLLTGGSRRGG--GDLLRQLHRLAAVESNLV 674 (1163)
Q Consensus 597 ~~~aie~al~~~l~nivv~~~~~~a~~I~~~k~~~~~~vT~~G~~~~~~g~i~gg~~~~~--~~~l~~~~~~~~l~~~l~ 674 (1163)
|-+|++...|..+=|+||.++..+-+.+......++|+|| |.|++.++.+....+ +..+ |-+ ...
T Consensus 538 f~tavEvtaGNsLF~iVVdndevATkIl~~~n~m~~GrVT-----F~PLNrl~~r~v~yp~~sdai---Pli-----~kl 604 (1200)
T KOG0964|consen 538 FKTAVEVTAGNSLFNIVVDNDEVATKILRKLNKMKGGRVT-----FMPLNRLKARDVEYPKDSDAI---PLI-----SKL 604 (1200)
T ss_pred HHhHHhhhcccceEEEEecccHHHHHHHHHHHhccCCeeE-----EeecccCchhhccCCCCCCcc---chH-----HHh
Confidence 4444444445555556665554443444445556779999 999998887543222 1111 111 112
Q ss_pred HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 001073 675 IHQKRLSEIEA--------------KIKELLPFQKKYMDLKAQLELKLYDLSLFQGRAE 719 (1163)
Q Consensus 675 ~~~~~~~~i~~--------------~i~~~~~~~~~i~~l~~~~~~~~~~~~~~~g~~~ 719 (1163)
.|+.+|..+.. +..-...+....+|++|+. ...-|.+|||..
T Consensus 605 ~y~p~fdka~k~Vfgktivcrdl~qa~~~ak~~~ln~ITl~GDq---vskkG~lTgGy~ 660 (1200)
T KOG0964|consen 605 RYEPQFDKALKHVFGKTIVCRDLEQALRLAKKHELNCITLSGDQ---VSKKGVLTGGYE 660 (1200)
T ss_pred CcchhhHHHHHHHhCceEEeccHHHHHHHHHhcCCCeEEeccce---ecccCCccccch
Confidence 33444444333 2222233445567899998 778899999983
No 31
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.87 E-value=2e-21 Score=208.17 Aligned_cols=155 Identities=35% Similarity=0.622 Sum_probs=124.4
Q ss_pred eeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhcc--CCcceEEEE
Q 001073 3 IKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQ--AGITKATVS 80 (1163)
Q Consensus 3 i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~--~~~~~a~v~ 80 (1163)
|++|.+.|||||.+.+.+ +|++++|+|+||||||||||++||+|+||+.+ ...|.....++|+.+.. .....+.|+
T Consensus 1 i~~i~l~nf~~~~~~~~~-~~~~~~~~i~G~NGsGKStll~ai~~~l~~~~-~~~r~~~~~~~i~~~~~~~~~~~~~~v~ 78 (247)
T cd03275 1 LKRLELENFKSYKGRHVI-GPFDRFTCIIGPNGSGKSNLMDAISFVLGEKS-SHLRSKNLKDLIYRARVGKPDSNSAYVT 78 (247)
T ss_pred CcEEEEECccccCCCeee-cCCCCeEEEECCCCCCHHHHHHHHHHHhCCCc-ccccccchhhhcccCccccCCCceEEEE
Confidence 689999999999877666 57789999999999999999999999998654 45688888899974321 123478999
Q ss_pred EEEecCCCCCCCCCCCCCCeEEEEEEEEeCCceeEEECCeecCHHHHHHHHHHcCCCCCCCceeeeCchhhHHhcCCch-
Q 001073 81 IVFDNSDRSRSPLGYEDHPEITVTRQIVVGGRNKYLINGKLAQPSQVQTLFHSVQLNVNNPHFLIMQGRITKVLNMKPP- 159 (1163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~~~~~~~in~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qg~v~~~~~~~p~- 159 (1163)
++|.+.+. ..+++.|.+ ..|.+.|++||+.++..++.+++..+|++++.++++++||+|..|+.|+|.
T Consensus 79 ~~f~~~~~----------~~~~~~~~~-~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~ 147 (247)
T cd03275 79 AVYEDDDG----------EEKTFRRII-TGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPG 147 (247)
T ss_pred EEEEcCCC----------cEEEEEEEE-ECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcc
Confidence 99986432 345666655 567788999999999999999999999999988999999999999999974
Q ss_pred HHHHHHHHHhc
Q 001073 160 EILSMLEEAAG 170 (1163)
Q Consensus 160 ~~~~~~e~~~g 170 (1163)
.+...+.+.+|
T Consensus 148 ~~~~~~~~LS~ 158 (247)
T cd03275 148 KRFRDMDNLSG 158 (247)
T ss_pred hhhhhHHHcCH
Confidence 33344444444
No 32
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.1e-15 Score=175.82 Aligned_cols=147 Identities=12% Similarity=0.105 Sum_probs=97.9
Q ss_pred CCChHHHHHHHHhcCCeEEecChHHHHHHHhhcCCCcceeecCCccccCCccccCCCCCCCCChhHHH----HHHHHHHH
Q 001073 596 GYSDELKTAMEYVFGSTFVCKSIDAAKEVAFSREIRTPSVTLEGDIFQPSGLLTGGSRRGGGDLLRQL----HRLAAVES 671 (1163)
Q Consensus 596 ~~~~aie~al~~~l~nivv~~~~~~a~~I~~~k~~~~~~vT~~G~~~~~~g~i~gg~~~~~~~~l~~~----~~~~~l~~ 671 (1163)
.|.+|++.+.|+.+.|+||+++...+..+.. +.=-+||| +.|++-|+.+..+++ ++... ++-..++-
T Consensus 535 ~~~tAle~~aGgrLynvVv~te~tgkqLLq~--g~l~rRvT-----iIPLnKI~s~~~s~~--v~~~ak~v~~~~v~~al 605 (1174)
T KOG0933|consen 535 SYATALETTAGGRLYNVVVDTEDTGKQLLQR--GNLRRRVT-----IIPLNKIQSFVLSPN--VLQAAKNVGNDNVELAL 605 (1174)
T ss_pred hHHHHHHHHhcCcceeEEeechHHHHHHhhc--ccccceeE-----EEechhhhhccCCHh--HHHHHHHhcCchHHHHH
Confidence 3578888999999999999987666665542 22247999 999998876654322 22222 33446788
Q ss_pred HHHHHHHHHHHHHH------------HHHHHHHH----HHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhh--HHHHHHH
Q 001073 672 NLVIHQKRLSEIEA------------KIKELLPF----QKKYMDLKAQLELKLYDLSLFQGRAEQNEHHKL--SEIVKKI 733 (1163)
Q Consensus 672 ~l~~~~~~~~~i~~------------~i~~~~~~----~~~i~~l~~~~~~~~~~~~~~~g~~~~~~~~~l--~~~i~~l 733 (1163)
.|+.|+..+.+..+ .+++.-.+ ..+-||++|++ ..|-|.+|||++..+.+.| -..+.+.
T Consensus 606 ~Li~yd~~l~~amefvFG~tlVc~~~d~AKkVaf~~~i~~rsVTl~GDV---~dP~GtlTGGs~~~~a~~L~~l~~l~~~ 682 (1174)
T KOG0933|consen 606 SLIGYDDELKKAMEFVFGSTLVCDSLDVAKKVAFDPKIRTRSVTLEGDV---YDPSGTLTGGSRSKGADLLRQLQKLKQA 682 (1174)
T ss_pred HHhcCCHHHHHHHHHHhCceEEecCHHHHHHhhcccccccceeeecCce---eCCCCcccCCCCCCcccHHHHHHHHHHH
Confidence 99999999998877 44444322 23447999999 9999999999976665544 2344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001073 734 EQELEEAKSSAKEKQLLYENS 754 (1163)
Q Consensus 734 ~~~l~~l~~~~~~l~~~l~~~ 754 (1163)
+.++...+.++..++.++..+
T Consensus 683 ~~~~~~~q~el~~le~eL~~l 703 (1174)
T KOG0933|consen 683 QKELRAIQKELEALERELKSL 703 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554444443
No 33
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.85 E-value=4.1e-18 Score=207.76 Aligned_cols=103 Identities=20% Similarity=0.214 Sum_probs=86.8
Q ss_pred cchhhhhccccccccccccChHHHHHHHHHHHHHHh------ccCCCCEEEeecCc-cCCCHHhHHHHHHHHhhhCCCCe
Q 001073 1052 GLEVCVAFGGVWKQSLSELSGGQRSLLALSLILALL------LFKPAPLYILDEVD-AALDLSHTQNIGRMIKTHFPHSQ 1124 (1163)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~lSgGek~~~~ia~~lal~------~~~~~p~~~lDE~~-~~lD~~~~~~~~~~l~~~~~~~q 1124 (1163)
++...+...|....++..|||||+++++||++|++. ...+||++|||||+ ++||+..+..+..+|..+ .+.+
T Consensus 451 ~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~~~~ 529 (562)
T PHA02562 451 EFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-KDTN 529 (562)
T ss_pred hhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-CCCe
Confidence 444555555554557899999999999999998742 11478999999997 789999999999999988 6889
Q ss_pred EEEEEeCcchhhhccceeeeeeeCCceEEEE
Q 001073 1125 FIVVSLKEGMFNNANVLFRTKFVDGVSTVQR 1155 (1163)
Q Consensus 1125 ~i~it~~~~~~~~a~~~~gv~~~~g~S~v~~ 1155 (1163)
+|+|||++.+...||+++.+...+|+|.|+.
T Consensus 530 iiiish~~~~~~~~d~~~~l~~~~~~~~~~~ 560 (562)
T PHA02562 530 VFVISHKDHDPQKFDRHLKMEKVGRFSVMVE 560 (562)
T ss_pred EEEEECchhchhhhhcEEEEEEECCeeEEee
Confidence 9999999999999999999888889999875
No 34
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.83 E-value=1.8e-17 Score=186.31 Aligned_cols=172 Identities=23% Similarity=0.385 Sum_probs=132.3
Q ss_pred ceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEEE
Q 001073 2 YIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSI 81 (1163)
Q Consensus 2 ~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~~ 81 (1163)
++.+|.|+||--+...+. +|++|+|+|+|.+|+|||-|+|||.++||+++. .++|+ .|...|.|+.
T Consensus 1 ML~~LsIknfaiIe~L~l--eF~~GltVlTGETGAGKSIiidAl~lllG~ra~--------~~~VR----~G~~~a~v~a 66 (557)
T COG0497 1 MLLELSIKNFAIIEELEL--EFEKGLTVLTGETGAGKSIIIDALGLLLGGRAD--------ASLVR----HGAKRAEVEA 66 (557)
T ss_pred CCcEEeeeheeeeeeeee--eccCCceEEecCCCCcHhHHHHHHHHHhCCCCC--------cchhc----CCCceeEEEE
Confidence 467899999999988765 899999999999999999999999999997542 25664 5678999999
Q ss_pred EEecCCCCC----CCCCCCCCCeEEEEEEEEeCCceeEEECCeecCHHHHHHHHHHcCCCCCCCceeeeCchhhHHhcCC
Q 001073 82 VFDNSDRSR----SPLGYEDHPEITVTRQIVVGGRNKYLINGKLAQPSQVQTLFHSVQLNVNNPHFLIMQGRITKVLNMK 157 (1163)
Q Consensus 82 ~~~~~~~~~----~~~~~~~~~~~~i~r~i~~~~~~~~~in~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qg~v~~~~~~~ 157 (1163)
.|+-++... ...+....+.++++|.|+++|+|.|||||++|+...+.++... .|-.+|+.+....++
T Consensus 67 ~F~~~~~~~~~~L~e~gie~~~~iilrR~i~~~GrSr~~INg~~Vs~~~L~~l~~~---------Li~IHGQh~~q~Ll~ 137 (557)
T COG0497 67 IFDLDNPPARAWLEENGIEDDEEVILRRVISADGRSRAFINGQPVSLAQLKELGQL---------LIDIHGQHEHQSLLK 137 (557)
T ss_pred EecCCchHHHHHHHHcCCCCcCcEEEEEEEcCCCceeEEECCEEeeHHHHHHHHHh---------hheeeccchHHHhcC
Confidence 998651111 0112222348999999999999999999999999999888642 233578888888889
Q ss_pred chHHHHHHHHHhchhhhH-HHHHHHHHHHHHHHhhHHHHH
Q 001073 158 PPEILSMLEEAAGTRMYE-TKKEAALKTLEKKQSKVDEIN 196 (1163)
Q Consensus 158 p~~~~~~~e~~~g~~~~~-~~~~~~~~~l~~~~~~~~~~~ 196 (1163)
|...+.+++.++|..... ..+......+...+..+..+.
T Consensus 138 ~~~~r~lLD~f~~~~~~~~~~~~~~y~~w~~~~~~l~~~~ 177 (557)
T COG0497 138 PELQRQLLDAFAGLEELAQEAYQEAYQAWKQARRELEDLQ 177 (557)
T ss_pred hHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999975444 235555666666555555443
No 35
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.82 E-value=6.4e-10 Score=144.89 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=44.6
Q ss_pred ChHHHHHHHHHHHHHHhcc--CCCCE---EEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcc
Q 001073 1071 SGGQRSLLALSLILALLLF--KPAPL---YILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEG 1133 (1163)
Q Consensus 1071 SgGek~~~~ia~~lal~~~--~~~p~---~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~ 1133 (1163)
|-|.=-++-+.+.+|+..+ ..+|| +.+||+=- |||.|+..+++++.. .+-.+|--+|+++
T Consensus 1122 S~G~syLi~~~~~i~l~~~lr~~~~~~ihwpiDEiG~-L~~~Nv~~l~~~~~~--nnI~li~A~P~~~ 1186 (1201)
T PF12128_consen 1122 SHGTSYLILCMFFIALTRMLRGDADFRIHWPIDEIGK-LHPNNVKKLLDMCNS--NNISLISAFPNPD 1186 (1201)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCCeEEEeeehhhcc-CChHHHHHHHHHHHh--CCceEEEeCCCCC
Confidence 8898888888887777533 34466 45899976 999999999999754 4566677777653
No 36
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.82 E-value=1.2e-19 Score=195.40 Aligned_cols=150 Identities=35% Similarity=0.607 Sum_probs=123.7
Q ss_pred eeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEEEE
Q 001073 3 IKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIV 82 (1163)
Q Consensus 3 i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~~~ 82 (1163)
|++|+|+|||||.+..++.+|+|++|+|+||||||||||++||+|+||...+. .|...+.++|+.+.......++|+++
T Consensus 1 i~~i~~~nfksy~~~~~~~~~~~~~~~i~GpNGsGKStll~ai~~~l~~~~~~-~~~~~~~~li~~~~~~~~~~~~v~i~ 79 (243)
T cd03272 1 IKQVIIQGFKSYKDQTVIEPFSPKHNVVVGRNGSGKSNFFAAIRFVLSDEYTH-LREEQRQALLHEGSGPSVMSAYVEII 79 (243)
T ss_pred CcEEEEeCccCcccCcccccCCCCcEEEECCCCCCHHHHHHHHHHHHcCchhh-hhhhhHHHhEeCCCCCCCceEEEEEE
Confidence 68999999999999888878999999999999999999999999999977655 78777789997543333467899999
Q ss_pred EecCCCCCCCCCCCCCCeEEEEEEEEeCCceeEEECCeecCHHHHHHHHHHcCCCCCCCceeeeCchhhHHhcCCc
Q 001073 83 FDNSDRSRSPLGYEDHPEITVTRQIVVGGRNKYLINGKLAQPSQVQTLFHSVQLNVNNPHFLIMQGRITKVLNMKP 158 (1163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~i~r~i~~~~~~~~~in~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qg~v~~~~~~~p 158 (1163)
|++.+.. .|. ...++.+.|.+.. ....|.++++.++..++...+..+|+...+++++++||.+..+..+.+
T Consensus 80 ~~~~~~~-~~~---~~~~~~i~r~ig~-~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~ 150 (243)
T cd03272 80 FDNSDNR-FPI---DKEEVRLRRTIGL-KKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQ 150 (243)
T ss_pred EEcCCCc-cCC---CCCEEEEEEEEEC-CCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccc
Confidence 9876543 222 1357788888854 346899999999999999999999998888888899999999987743
No 37
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=8.3e-20 Score=198.73 Aligned_cols=142 Identities=28% Similarity=0.481 Sum_probs=114.2
Q ss_pred eeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEEEE
Q 001073 3 IKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIV 82 (1163)
Q Consensus 3 i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~~~ 82 (1163)
|.+|.+.||+||....+ +|+||+|+|+|||||||||||+||+|++|+++ .+++++ .+...+.|+++
T Consensus 1 l~~l~i~nf~~~~~~~i--~~~~~~~~i~G~nGsGKS~il~ai~~~~~~~~--------~~~~~~----~~~~~~~v~~~ 66 (276)
T cd03241 1 LLELSIKNFALIEELEL--DFEEGLTVLTGETGAGKSILLDALSLLLGGRA--------SADLIR----SGAEKAVVEGV 66 (276)
T ss_pred CcEEEEeCccceeeeEE--EeCCCeEEEEcCCCCCHHHHHHHHHHHhcCCC--------hHHHhh----CCCCeEEEEEE
Confidence 57899999999977544 79999999999999999999999999999752 247775 34567889999
Q ss_pred EecCCCCC-CCC----CCCCCCeEEEEEEEEeCCceeEEECCeecCHHHHHHHHHHcCCCCCCCceeeeCchhhHHhcCC
Q 001073 83 FDNSDRSR-SPL----GYEDHPEITVTRQIVVGGRNKYLINGKLAQPSQVQTLFHSVQLNVNNPHFLIMQGRITKVLNMK 157 (1163)
Q Consensus 83 ~~~~~~~~-~~~----~~~~~~~~~i~r~i~~~~~~~~~in~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qg~v~~~~~~~ 157 (1163)
|.+.+... .+. .+...++++|+|.++.+|++.|+|||+.+++.++.+++ ..++..||+++.+..++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~i~R~i~~~~~s~~~Ing~~vsl~~l~~i~---------~~li~i~gq~~~~~l~~ 137 (276)
T cd03241 67 FDISDEEEAKALLLELGIEDDDDLIIRREISRKGRSRYFINGQSVTLKLLRELG---------SLLVDIHGQHDHQNLLN 137 (276)
T ss_pred EecCCchHHHHHHHHcCCCCCCeEEEEEEEecCCceEEEECCEEECHHHHHHHH---------HhheEEECcHHHHHhcC
Confidence 98654321 000 01113689999999988999999999999999998886 34566788898888889
Q ss_pred chHHHHHHHH
Q 001073 158 PPEILSMLEE 167 (1163)
Q Consensus 158 p~~~~~~~e~ 167 (1163)
|..++.+|++
T Consensus 138 ~~~~~~lLD~ 147 (276)
T cd03241 138 PERQLDLLDG 147 (276)
T ss_pred hHHhHhhhhC
Confidence 9999999988
No 38
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=9.7e-15 Score=170.12 Aligned_cols=140 Identities=16% Similarity=0.160 Sum_probs=88.8
Q ss_pred CCChHHHHHHHHhcCCeEEecChHHHHHHHhhcCCCcceeecCCccccCCccccCCCCCCCCChhHHHHHHHHHHHHHHH
Q 001073 596 GYSDELKTAMEYVFGSTFVCKSIDAAKEVAFSREIRTPSVTLEGDIFQPSGLLTGGSRRGGGDLLRQLHRLAAVESNLVI 675 (1163)
Q Consensus 596 ~~~~aie~al~~~l~nivv~~~~~~a~~I~~~k~~~~~~vT~~G~~~~~~g~i~gg~~~~~~~~l~~~~~~~~l~~~l~~ 675 (1163)
.|..|+-.+||..+..|||.+...+..+|.|++..+++..| |+|+.++..++.... +....| ..+.-+...
T Consensus 518 kyeiAvt~~Lgk~~daIiVdte~ta~~CI~ylKeqr~~~~T-----FlPld~i~v~~~~e~---lr~~~g-~rlv~Dvi~ 588 (1141)
T KOG0018|consen 518 KYEIAVTVVLGKNMDAIIVDTEATARDCIQYLKEQRLEPMT-----FLPLDSIRVKPVNEK---LRELGG-VRLVIDVIN 588 (1141)
T ss_pred HHHHHHHHHHhcccceEEeccHHHHHHHHHHHHHhccCCcc-----ccchhhhhcCccccc---ccCcCC-eEEEEEecC
Confidence 46778888888888888888877788999999999999999 999999876553211 111111 111223334
Q ss_pred HHHHHHHHHH------------HHHHHHH----HHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 001073 676 HQKRLSEIEA------------KIKELLP----FQKKYMDLKAQLELKLYDLSLFQGRAEQNEHHKLSEIVKKIEQELEE 739 (1163)
Q Consensus 676 ~~~~~~~i~~------------~i~~~~~----~~~~i~~l~~~~~~~~~~~~~~~g~~~~~~~~~l~~~i~~l~~~l~~ 739 (1163)
++.++..+.. ++++... .+...|+++|.+ ++.+|.|+||+.... --...++.|...-..
T Consensus 589 ye~e~eka~~~a~gn~Lvcds~e~Ar~l~y~~~~r~k~valdGtl---~~ksGlmsGG~s~~~--wdek~~~~L~~~k~r 663 (1141)
T KOG0018|consen 589 YEPEYEKAVQFACGNALVCDSVEDARDLAYGGEIRFKVVALDGTL---IHKSGLMSGGSSGAK--WDEKEVDQLKEKKER 663 (1141)
T ss_pred CCHHHHHHHHHHhccceecCCHHHHHHhhhcccccceEEEeeeeE---EeccceecCCccCCC--cCHHHHHHHHHHHHH
Confidence 4444444333 3333332 246678999999 999999999984411 114455555555555
Q ss_pred HHHHHHHHHH
Q 001073 740 AKSSAKEKQL 749 (1163)
Q Consensus 740 l~~~~~~l~~ 749 (1163)
+..++.++..
T Consensus 664 l~eel~ei~~ 673 (1141)
T KOG0018|consen 664 LLEELKEIQK 673 (1141)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 39
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=5.9e-11 Score=136.01 Aligned_cols=103 Identities=21% Similarity=0.269 Sum_probs=78.0
Q ss_pred HhHHhhhcCCccccccCCCCCcccccchhhhhccccccccccccChHHHHHHHHHHHHHHhcc----CCCCEEEeecCcc
Q 001073 1027 GSIFSTLLPGTMAKLEPPEGGNFLDGLEVCVAFGGVWKQSLSELSGGQRSLLALSLILALLLF----KPAPLYILDEVDA 1102 (1163)
Q Consensus 1027 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~----~~~p~~~lDE~~~ 1102 (1163)
+.+|..|+.|.+..+......+ .|.|.........+..||-|-+=-.=+|+.||+... .|-|| |+|.+..
T Consensus 864 ~~~F~hlT~G~Yt~Iy~~e~~d-----~I~V~~~~G~~~~~~ELSqgT~EQLYlAlRfali~~~~~~~~LP~-i~DD~fV 937 (984)
T COG4717 864 SEFFMHLTDGRYTGIYTQEDKD-----SIIVEHRAGGSKLAEELSQGTKEQLYLALRFALIHEVRTREPLPF-IADDIFV 937 (984)
T ss_pred HHHHhhccCCceeeeecccCCc-----eeEEEecccccccHHHHhhhHHHHHHHHHHHHHHhhhccCCCCCe-eeccchh
Confidence 4567888877665554322212 244444433345788999999999999999998543 35565 6899999
Q ss_pred CCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh
Q 001073 1103 ALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF 1135 (1163)
Q Consensus 1103 ~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~ 1135 (1163)
+.|+....+++.+|.+++++.|+|..||.+.+.
T Consensus 938 hFD~~R~~r~~e~l~dls~~~QviYFTCHe~~~ 970 (984)
T COG4717 938 HFDDERAKRMLELLADLSEGNQVIYFTCHEHTC 970 (984)
T ss_pred ccCHHHHHHHHHHHHHhccCCeEEEEEechhhh
Confidence 999999999999999999999999999988773
No 40
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=4.9e-19 Score=191.99 Aligned_cols=139 Identities=24% Similarity=0.386 Sum_probs=112.3
Q ss_pred eeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEEEE
Q 001073 3 IKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIV 82 (1163)
Q Consensus 3 i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~~~ 82 (1163)
|++|.|+||++|.+.+ + +|+||+|+|+||||||||||++||.|++|+++ .|.....++|+. +...+.|+++
T Consensus 1 l~~l~i~nfr~~~~~~-~-~~~~~~~~i~G~NGsGKS~ll~Ai~~~~~~~~---~r~~~~~~~i~~----~~~~~~v~~~ 71 (270)
T cd03242 1 LKSLELRNFRNYAELE-L-EFEPGVTVLVGENAQGKTNLLEAISLLATGKS---HRTSRDKELIRW----GAEEAKISAV 71 (270)
T ss_pred CcEEEEeCCcCcceeE-E-ecCCCeEEEECCCCCCHHHHHHHHHHhccCCC---CCCCCHHHHHhc----CCCCEEEEEE
Confidence 5789999999998765 4 79999999999999999999999999998753 466677899963 4567999999
Q ss_pred EecCCCCCCCCCCCCCCeEEEEEEEEeCCceeEEECCeecCH-HHHHHHHHHcCCCCCCCceeeeCchhhHHhcCCchHH
Q 001073 83 FDNSDRSRSPLGYEDHPEITVTRQIVVGGRNKYLINGKLAQP-SQVQTLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEI 161 (1163)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~i~r~i~~~~~~~~~in~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Qg~v~~~~~~~p~~~ 161 (1163)
|.+.+ ..+++.|.+..+|++.|+|||..++. .++..++ + .+..|+....+..++|..+
T Consensus 72 f~~~~-----------~~~~i~~~~~~~~~~~~~ing~~~~~l~~l~~~l---------~-~i~~~~~~~~l~~~~p~~r 130 (270)
T cd03242 72 LERQG-----------GELALELTIRSGGGRKARLNGIKVRRLSDLLGVL---------N-AVWFAPEDLELVKGSPADR 130 (270)
T ss_pred EEeCC-----------CeEEEEEEEEcCCceEEEECCeeccCHHHHhCcC---------c-EEEEecchhhhhcCCHHHH
Confidence 98642 24678888877788899999999875 5554433 2 2445677778888999999
Q ss_pred HHHHHHHhch
Q 001073 162 LSMLEEAAGT 171 (1163)
Q Consensus 162 ~~~~e~~~g~ 171 (1163)
+.+|+.+++.
T Consensus 131 r~~lD~~~~~ 140 (270)
T cd03242 131 RRFLDRLLGQ 140 (270)
T ss_pred HHHHHHHHHh
Confidence 9999999983
No 41
>PRK00064 recF recombination protein F; Reviewed
Probab=99.79 E-value=1.7e-18 Score=194.74 Aligned_cols=140 Identities=22% Similarity=0.364 Sum_probs=114.9
Q ss_pred CceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEE
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVS 80 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~ 80 (1163)
|+|.+|.|.||++|.+.+. .|+||+|+|+||||||||||++||++++++.+ .|.....++|+. |...+.|+
T Consensus 1 M~i~~l~i~nfr~~~~~~l--~~~~~~~~i~G~NgsGKT~lleai~~l~~~~s---~r~~~~~~li~~----g~~~~~v~ 71 (361)
T PRK00064 1 MYLTRLSLTDFRNYEELDL--ELSPGVNVLVGENGQGKTNLLEAIYLLAPGRS---HRTARDKELIRF----GAEAAVIH 71 (361)
T ss_pred CEEEEEEEeCCCcccceEE--EecCCeEEEECCCCCCHHHHHHHHHHhCCCCC---ccCCChhHHHhc----CCCcEEEE
Confidence 9999999999999987654 69999999999999999999999999887643 588888999963 45678999
Q ss_pred EEEecCCCCCCCCCCCCCCeEEEEEEEEeCCceeEEECCeec-CHHHHHHHHHHcCCCCCCCceeeeCchhhHHhcCCch
Q 001073 81 IVFDNSDRSRSPLGYEDHPEITVTRQIVVGGRNKYLINGKLA-QPSQVQTLFHSVQLNVNNPHFLIMQGRITKVLNMKPP 159 (1163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~~~~~~~in~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Qg~v~~~~~~~p~ 159 (1163)
++|.+.+ ..++|.+.+...|++.|+|||+++ +..++..++. .++..++-..+...+|.
T Consensus 72 ~~~~~~~-----------~~~~i~~~~~~~~~~~~~ing~~~~~~~~l~~~~~----------~v~~~p~~~~l~~~~p~ 130 (361)
T PRK00064 72 GRVEKGG-----------RELPLGLEIDKKGGRKVRINGEPQRKLAELAGLLN----------VVLFTPEDLRLVKGGPS 130 (361)
T ss_pred EEEEeCC-----------cEEEEEEEEEcCCceEEEECCccccCHHHHhhhcc----------EEEEccchhhhhcCCHH
Confidence 9997531 345778877666778899999999 7888888873 23334444578889999
Q ss_pred HHHHHHHHHhc
Q 001073 160 EILSMLEEAAG 170 (1163)
Q Consensus 160 ~~~~~~e~~~g 170 (1163)
.|+.+|+..++
T Consensus 131 ~RR~fLD~~~~ 141 (361)
T PRK00064 131 ERRRFLDRLLF 141 (361)
T ss_pred HHHHHHHHHHh
Confidence 99999999987
No 42
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=99.78 E-value=1.6e-14 Score=176.39 Aligned_cols=167 Identities=20% Similarity=0.319 Sum_probs=102.9
Q ss_pred CceeEEEecCccccCCCccccCCC----CCceEEecCCCCchhhHHHHHHHHhCCCcch-hhhhh-hhH----HHHHhhc
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFD----PYFNAITGLNGSGKSNILDSICFVLGITNLQ-QVRAS-NLQ----ELVYKQG 70 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~----~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~-~~r~~-~~~----~~i~~~~ 70 (1163)
|+|++|.|.||++|.+.+.+ +|+ +++++|+|||||||||+++||+|||++..+. ..|+. +.. ++++...
T Consensus 1 M~i~~l~l~nf~~~~~~~~~-~~~~~~~~~~~~i~G~Ng~GKttll~ai~~~LyG~~~~~~~~~~~~y~~~l~~~~n~~~ 79 (650)
T TIGR03185 1 MIILQLTLENFGPYRGRQTF-DLSPSSPKPIILIGGLNGAGKTTLLDAIQLALYGKRALCSGRGNKSYEQYLRGLINRQA 79 (650)
T ss_pred CcccEEEEeceEEEcCCcee-eeecCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccccccCCccCcHHHHHHHHhcccC
Confidence 99999999999999987544 454 3589999999999999999999999665432 33433 233 4443221
Q ss_pred cCCcceEEEEEEEecCCCCCCCCCCCCCCeEEEEEEEEeCC---ceeE--EECCeecC--HHHHHHHHHHc-CCCCCCCc
Q 001073 71 QAGITKATVSIVFDNSDRSRSPLGYEDHPEITVTRQIVVGG---RNKY--LINGKLAQ--PSQVQTLFHSV-QLNVNNPH 142 (1163)
Q Consensus 71 ~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~~---~~~~--~in~~~~~--~~~~~~~~~~~-~~~~~~~~ 142 (1163)
.+...++|+++|...+.. ....++|+|.+...+ +..+ +.+|.+.. .....+++..+ ..++. ++
T Consensus 80 -~~~~~~~V~l~f~~~~~~-------~~~~y~i~R~w~~~~k~~~~~l~v~~~~~~~~~~~~~~~~~i~~ilp~~~~-~~ 150 (650)
T TIGR03185 80 -GKTNPASITLTFSVVEGG-------KRHEYTLVRSWHINNKDVKEKLTVYKDDEEDDSLNDIWDEFINELLPLELA-DL 150 (650)
T ss_pred -CCCCCeEEEEEEEEccCC-------ceEEEEEEEEecCCCCCCCCcEEEEECCcccchhhHHHHHHHHHhCCHhHH-HH
Confidence 234578999999854221 113567888764321 2222 34664322 12333344431 22222 34
Q ss_pred eeeeCchhhHHhcC-CchH-HHHHHHHHhchhhhHHH
Q 001073 143 FLIMQGRITKVLNM-KPPE-ILSMLEEAAGTRMYETK 177 (1163)
Q Consensus 143 ~~~~Qg~v~~~~~~-~p~~-~~~~~e~~~g~~~~~~~ 177 (1163)
||.-=.+|..|+.. ++.+ +...+..+.|...|+.-
T Consensus 151 FfFDGE~I~~la~~~~~~~~l~~Ai~~LlGl~~~~~L 187 (650)
T TIGR03185 151 FFFDGEKIEALANPDRLASLLKEAIEVLLGLDLIDRL 187 (650)
T ss_pred hcccHHHHHHHhccccchHHHHHHHHHHhCcHHHHHH
Confidence 44333348888864 3444 77888888898776643
No 43
>PRK14079 recF recombination protein F; Provisional
Probab=99.78 E-value=2.7e-18 Score=191.89 Aligned_cols=138 Identities=22% Similarity=0.286 Sum_probs=110.6
Q ss_pred CceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEE
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVS 80 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~ 80 (1163)
|+|.+|.|.||+||.+.+. +|+||+|+|+||||||||||++||+|++|+ ..|.....++|+. |...++|.
T Consensus 1 M~i~~l~l~nfRn~~~~~l--~f~~g~nvi~G~NGsGKT~lLeAI~~~~~g----s~r~~~~~~lI~~----g~~~~~v~ 70 (349)
T PRK14079 1 MRLLSLRQLNYRNLAPPTL--AFPPGVTAVVGENAAGKTNLLEAIYLALTG----ELPNGRLADLVRF----GEGEAWVH 70 (349)
T ss_pred CEEEEEEEeccCCcccceE--EeCCCeEEEECCCCCCHHHHHHHHHHHhcC----CCCCCcHHhheec----CCCcEEEE
Confidence 9999999999999998764 799999999999999999999999999986 2577788899963 34568899
Q ss_pred EEEecCCCCCCCCCCCCCCeEEEEEEEEeCCceeEEECCeecCHHHHHHHHHHcCCCCCCCceeeeCchhhHHhcCCchH
Q 001073 81 IVFDNSDRSRSPLGYEDHPEITVTRQIVVGGRNKYLINGKLAQPSQVQTLFHSVQLNVNNPHFLIMQGRITKVLNMKPPE 160 (1163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~~~~~~~in~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qg~v~~~~~~~p~~ 160 (1163)
+.|...+. ...+...+. .+++.|+|||++++..++..++ |+.++.|+++.-+.. +|..
T Consensus 71 ~~~~~~~~-----------~~~~~~~~~-~~~~~~~ing~~~~~~~l~~~~---------~~v~~~p~d~~li~~-~p~~ 128 (349)
T PRK14079 71 AEVETGGG-----------LSRLEVGLG-PGRRELKLDGVRVSLRELARLP---------GAVLIRPEDLELVLG-PPEG 128 (349)
T ss_pred EEEEeCCC-----------eEEEEEEEE-cCceEEEECCeecCHHHHHhhh---------cEEEEecCchHhhhC-CHHH
Confidence 88864321 122333343 3456899999999988888775 555678998877665 8999
Q ss_pred HHHHHHHHhc
Q 001073 161 ILSMLEEAAG 170 (1163)
Q Consensus 161 ~~~~~e~~~g 170 (1163)
|+.+++.+++
T Consensus 129 RR~fLD~~l~ 138 (349)
T PRK14079 129 RRAYLDRLLS 138 (349)
T ss_pred HHHHHHHHHH
Confidence 9999999886
No 44
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.74 E-value=3.6e-15 Score=178.60 Aligned_cols=108 Identities=22% Similarity=0.243 Sum_probs=88.8
Q ss_pred cchhhhhc-cccccccc-cccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEE
Q 001073 1052 GLEVCVAF-GGVWKQSL-SELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVS 1129 (1163)
Q Consensus 1052 ~~~~~~~~-~~~~~~~~-~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it 1129 (1163)
.+++.+.+ +|...+++ ..|||||+++++||+.+++....++|++||||||+|||+.....+..+|...+.+.|+|+||
T Consensus 421 ~v~f~~~~n~g~~~~pl~~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iT 500 (563)
T TIGR00634 421 QVEFLFSANTGEPVKPLAKVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVT 500 (563)
T ss_pred EEEEEEecCCCCCCCChhhhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 46666655 35444555 58999999999999998875444679999999999999999999999999887789999999
Q ss_pred eCcchhhhccceeeeeee--CC--ceEEEEeecc
Q 001073 1130 LKEGMFNNANVLFRTKFV--DG--VSTVQRTVAT 1159 (1163)
Q Consensus 1130 ~~~~~~~~a~~~~gv~~~--~g--~S~v~~~~~~ 1159 (1163)
|.+.++..||+.|.|... +| .|+|..++..
T Consensus 501 H~~~~~~~ad~~~~l~k~~~~~~t~s~i~~L~~~ 534 (563)
T TIGR00634 501 HLPQVAAHADAHFKVEKEGLDGRTATRVRPLSGE 534 (563)
T ss_pred ChHHHHHhcCeEEEEEEccCCCcEEEEEEECCcc
Confidence 999999999999999873 33 5777766544
No 45
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.73 E-value=6.8e-11 Score=140.16 Aligned_cols=186 Identities=18% Similarity=0.220 Sum_probs=115.6
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhcCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001073 946 DPYKAREELEKLQAEQSGLEKRVNKKV---MAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLKVTWVKV 1022 (1163)
Q Consensus 946 ~~~~l~~~l~~l~~~~~~l~~~vn~~~---~e~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~ 1022 (1163)
+.+++.+++..|+.++......+.... ...++.+...+..-.-... +...+..+...+.. ++..|...-..+
T Consensus 865 ~~~eik~ei~rlk~~i~~~ee~~~~~~e~~~~~~~~~~~~~k~~~~k~~-~~e~L~~l~~~l~~----R~~~~qk~r~~~ 939 (1074)
T KOG0250|consen 865 TVAEIKREIKRLKRQIQMCEESLGELEELHRGLHEARKELKKEDELKVT-LDELLKALGEALES----REQKYQKFRKLL 939 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhhhhhHHHHHH-HHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 457899999999999888764333221 1222222222111111111 22222233332222 333444444445
Q ss_pred hhhHHhHHhhhcCC--ccccccCCCCCcccccchhhh-hccc-cc--cccccccChHHHHHHHHHHHHHHhccCCCCEEE
Q 001073 1023 NKDFGSIFSTLLPG--TMAKLEPPEGGNFLDGLEVCV-AFGG-VW--KQSLSELSGGQRSLLALSLILALLLFKPAPLYI 1096 (1163)
Q Consensus 1023 ~~~f~~~~~~l~~~--~~~~l~~~~~~~~~~~~~~~~-~~~~-~~--~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~ 1096 (1163)
.......|..+++- ..+.+... +-...+.+.| .|++ .. ..++..||||||||+++||+||||.+..|||++
T Consensus 940 ~~~~~~~F~~~l~~R~~sg~l~~~---~e~ktl~i~v~~~~~~~~~~v~d~~gLSGGERSFsTv~lllsLW~~me~Pfr~ 1016 (1074)
T KOG0250|consen 940 TRRATEEFDALLGKRGFSGKLEFD---HEEKTLSISVKLPTSGNEKAVRDTRGLSGGERSFSTVCLLLSLWEVMECPFRA 1016 (1074)
T ss_pred HHHHHHHHHHHhhccccCcceeec---ccccccchhhccCCCCcccccccccccCcccchHHHHHHHHHHhHhhcCchhh
Confidence 55555666666542 22333321 2334567777 4433 22 467899999999999999999999999999999
Q ss_pred eecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCc-chhhhcc
Q 001073 1097 LDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKE-GMFNNAN 1139 (1163)
Q Consensus 1097 lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~-~~~~~a~ 1139 (1163)
|||+|++||..|+...+++|...+ .+.|||||||.. ..+...|
T Consensus 1017 LDEFDVFMD~vNRKi~~dlLv~~a~~~~~Q~IfiTPqdi~~l~~~~ 1062 (1074)
T KOG0250|consen 1017 LDEFDVFMDMVNRKISMDLLVDFAKKKGRQFIFITPQDISKLNSDD 1062 (1074)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEEccccHhhhcccc
Confidence 999999999999999999887643 359999999863 3444333
No 46
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.73 E-value=2e-09 Score=120.30 Aligned_cols=149 Identities=21% Similarity=0.278 Sum_probs=85.5
Q ss_pred ceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCC--------cchhhhhhhhHHHHHhh--cc
Q 001073 2 YIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGIT--------NLQQVRASNLQELVYKQ--GQ 71 (1163)
Q Consensus 2 ~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~--------~~~~~r~~~~~~~i~~~--~~ 71 (1163)
++.+|.+.|+-+|. |+..++..+--.++|..||||||++|||.-+|-.. +...-|.-++..+|..- ..
T Consensus 16 RL~~iqliNWGTF~--T~~~~~T~~G~LvTG~~GSGKSTLIDAITavLlP~~kl~~N~AA~A~t~~RSL~tYi~G~~raq 93 (1104)
T COG4913 16 RLSRIQLINWGTFH--TVDIPVTREGILVTGGSGSGKSTLIDAITAVLLPQGKLRFNSAAQANTPRRSLVTYIRGAWRAQ 93 (1104)
T ss_pred eeeEEEEeeccccc--eeeeeEeccceEEecCCCCCchhHHHHHHHHhcccchhhcccccccCCchhHHHHHHHHHHhhc
Confidence 67899999999996 33335666668999999999999999999888421 11122335666777421 00
Q ss_pred --------------CCcceEEEEEEEecCCCCCCCCCCCCCCeEEEEEEEEe--CCceeEEECCee--------------
Q 001073 72 --------------AGITKATVSIVFDNSDRSRSPLGYEDHPEITVTRQIVV--GGRNKYLINGKL-------------- 121 (1163)
Q Consensus 72 --------------~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~i~r~i~~--~~~~~~~in~~~-------------- 121 (1163)
+..+..-|..+|.|+. ..++++.-.++. +..+.|| |.-
T Consensus 94 ~~~~~~~~~~~~LR~~a~YSlv~~~~~NG~----------~~~~TL~~iF~LK~S~~~~~~--~~~~~d~~i~~~~DF~~ 161 (1104)
T COG4913 94 EDPLQDQIVSTYLRPRATYSLVGLTYSNGE----------GVEHTLVAIFYLKSSDISSYY--GVFPVDQDINALLDFLK 161 (1104)
T ss_pred cCccccceeeeeeccccceEEEEEEeecCC----------CeeEEEEEEEEeeccCCCcee--eEEechhhHHHHHHHHH
Confidence 1123455777777631 134555555543 2334555 332
Q ss_pred --cCHHHHHHHHHHcCCCCCCCceeeeCchhhHHhcCCchHHHHHHHH
Q 001073 122 --AQPSQVQTLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEE 167 (1163)
Q Consensus 122 --~~~~~~~~~~~~~~~~~~~~~~~~~Qg~v~~~~~~~p~~~~~~~e~ 167 (1163)
...+.++..|...++....+. .-|.+..-.+.+.++-+.+|-.
T Consensus 162 ~G~D~r~iR~~~k~A~~~~~~S~---~~~~FR~R~GI~~EeAL~L~H~ 206 (1104)
T COG4913 162 EGIDKRQIRAAFKEAIFSEQHSV---FSGRFRSRLGISSEEALLLLHR 206 (1104)
T ss_pred ccCcHHHHHHHHHhcchhhhhhH---HHHHHHHhhCCChHHHHHHHHH
Confidence 333445555555554443222 2455555555555555555543
No 47
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.73 E-value=9.6e-18 Score=173.80 Aligned_cols=110 Identities=32% Similarity=0.443 Sum_probs=93.2
Q ss_pred ceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEEE
Q 001073 2 YIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSI 81 (1163)
Q Consensus 2 ~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~~ 81 (1163)
.|.+|+++||++|.+. .+ .|+||+|+|+|||||||||||+||+++||+.+....|...+.++|+. |...+.|++
T Consensus 2 ~i~~i~i~nfr~~~~~-~i-~~~~g~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~----g~~~~~v~~ 75 (213)
T cd03277 2 SIVRIKLENFVTYDET-EF-RPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKR----GCDEGTIEI 75 (213)
T ss_pred eeEEEEEeCCCCccee-EE-ecCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhC----CCCcEEEEE
Confidence 4889999999999654 34 79999999999999999999999999999877666788888899963 456788999
Q ss_pred EEecCCCCCCCCCCCCCCeEEEEEEEEeCCceeEEECCeecCHHHHHHHHHHcCCCCCCCceeeeCchhhHHhcCCchHH
Q 001073 82 VFDNSDRSRSPLGYEDHPEITVTRQIVVGGRNKYLINGKLAQPSQVQTLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEI 161 (1163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~i~r~i~~~~~~~~~in~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qg~v~~~~~~~p~~~ 161 (1163)
.|.+.+ .. +.++|+|++++||++.+++.|+|.++
T Consensus 76 ~~~~~~-----------~~-----------------------------------~~~~n~~~~~~q~~~~~~~~~~~~e~ 109 (213)
T cd03277 76 ELYGNP-----------GN-----------------------------------IQVDNLCQFLPQDRVGEFAKLSPIEL 109 (213)
T ss_pred EEEeCC-----------Cc-----------------------------------cccCCceEEEchHHHHHHHhCChHhH
Confidence 887531 00 67789999999999999999999988
Q ss_pred HH
Q 001073 162 LS 163 (1163)
Q Consensus 162 ~~ 163 (1163)
+.
T Consensus 110 l~ 111 (213)
T cd03277 110 LV 111 (213)
T ss_pred he
Confidence 83
No 48
>PRK10869 recombination and repair protein; Provisional
Probab=99.73 E-value=1.7e-14 Score=170.54 Aligned_cols=108 Identities=22% Similarity=0.245 Sum_probs=88.0
Q ss_pred ccchhhhhcc-ccccccc-cccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEE
Q 001073 1051 DGLEVCVAFG-GVWKQSL-SELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVV 1128 (1163)
Q Consensus 1051 ~~~~~~~~~~-~~~~~~~-~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~i 1128 (1163)
+.+++.+.++ |.+.+|+ ..|||||++|++||+.+++....+||++||||||+|||......++++|...+.++|+|+|
T Consensus 410 d~veF~~~~n~g~~~~pL~k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~i 489 (553)
T PRK10869 410 DRIEFRVTTNPGQPLQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCV 489 (553)
T ss_pred eEEEEEEecCCCCCcchhhhhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 3456666553 4333443 4789999999999999998777789999999999999999999999999998778999999
Q ss_pred EeCcchhhhccceeeeeee-CC---ceEEEEeec
Q 001073 1129 SLKEGMFNNANVLFRTKFV-DG---VSTVQRTVA 1158 (1163)
Q Consensus 1129 t~~~~~~~~a~~~~gv~~~-~g---~S~v~~~~~ 1158 (1163)
||.+.+..+||+.|.|... +| +|.|..++.
T Consensus 490 TH~~~~~~~ad~~~~v~k~~~~~~t~s~i~~L~~ 523 (553)
T PRK10869 490 THLPQVAGCGHQHFFVSKETDGGMTETHMQPLDK 523 (553)
T ss_pred ecCHHHHHhCCEEEEEeccccCCeeeEEEEECCh
Confidence 9999999999999999873 34 355555543
No 49
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.70 E-value=8.3e-09 Score=133.13 Aligned_cols=50 Identities=22% Similarity=0.377 Sum_probs=45.4
Q ss_pred ceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCc
Q 001073 2 YIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITN 53 (1163)
Q Consensus 2 ~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~ 53 (1163)
+|++|.|.||.+|.+.++ +|++|+++|+|||||||||+|+||+++|.+..
T Consensus 6 ki~~l~l~N~~~~~~~~~--~f~~~~~~l~G~NGaGKSTll~ai~~~l~~~~ 55 (1486)
T PRK04863 6 KFRSLTLVNWNGFFARTF--DLDELVTTLSGGNGAGKSTTMAAFVTALIPDL 55 (1486)
T ss_pred eeeEEEEecccCccceEE--EecCCeEEEECCCCCCHHHHHHHHHccccCCC
Confidence 689999999999998854 79999999999999999999999999996543
No 50
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=99.65 E-value=7e-12 Score=153.38 Aligned_cols=111 Identities=21% Similarity=0.329 Sum_probs=75.5
Q ss_pred HHHHHhhhhHHhHHhhhcCCc--cccccCCCCCcccccchhhhhccccccccccccChHHHHHHHHHHHHHHhccC--CC
Q 001073 1017 VTWVKVNKDFGSIFSTLLPGT--MAKLEPPEGGNFLDGLEVCVAFGGVWKQSLSELSGGQRSLLALSLILALLLFK--PA 1092 (1163)
Q Consensus 1017 ~~~~~~~~~f~~~~~~l~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~--~~ 1092 (1163)
.....+...+..+|..++... ...+.. +++++ .+.+ +...+. ..++..|||||++.++||+++||..+. +.
T Consensus 502 ~~~~~le~~~~~~f~~l~~k~~~~~~v~i-d~~~~--~~~l-~~~~g~-~~~~~~lS~Ge~~~~~la~~~al~~~~~~~~ 576 (650)
T TIGR03185 502 RKLQQLEEEITKSFKKLMRKHNLISRLKI-DPETF--AVSL-YDNNGK-HIDKERLSAGERQILAIALLWGLAKVSGRRL 576 (650)
T ss_pred HHHHHHHHHHHHHHHHHhcccCceeEEEE-cCCce--eEEE-EcCCCC-CcCCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 345556777777888776531 122221 11122 2222 122332 347899999999999999999997543 57
Q ss_pred CEEEeecCccCCCHHhHHHHHH-HHhhhCCCCeEEEEEeCcchh
Q 001073 1093 PLYILDEVDAALDLSHTQNIGR-MIKTHFPHSQFIVVSLKEGMF 1135 (1163)
Q Consensus 1093 p~~~lDE~~~~lD~~~~~~~~~-~l~~~~~~~q~i~it~~~~~~ 1135 (1163)
||+ +|+|++.||+.++..+.. ++... ..|+||+||+.++-
T Consensus 577 p~i-iD~p~~~lD~~~r~~l~~~~~~~~--~~QvIils~d~e~~ 617 (650)
T TIGR03185 577 PVI-IDTPLGRLDSSHRENLVVNYFPKA--SHQVLLLSTDEEVD 617 (650)
T ss_pred CEE-EcCCccccChHHHHHHHHHHhhcc--CCeEEEEechHhhC
Confidence 885 699999999999998774 66543 58999999997653
No 51
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.62 E-value=2.4e-07 Score=119.80 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=6.5
Q ss_pred eCchhhHHhcCCch
Q 001073 146 MQGRITKVLNMKPP 159 (1163)
Q Consensus 146 ~Qg~v~~~~~~~p~ 159 (1163)
.|-.+..++..++-
T Consensus 805 iQ~N~r~~~~lr~w 818 (1930)
T KOG0161|consen 805 IQRNIRAYLKLRTW 818 (1930)
T ss_pred HHHHHHHHHhhccC
Confidence 45555555444433
No 52
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.62 E-value=5.7e-15 Score=165.56 Aligned_cols=141 Identities=21% Similarity=0.273 Sum_probs=101.3
Q ss_pred CceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEE
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVS 80 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~ 80 (1163)
|+|.+|.|.||++|.+..+ .|+||+|+|+||||||||||++||++++++.+ .|.....++|+. |...+.|+
T Consensus 1 M~l~~L~i~nFR~~~~~~l--~~~~~~nvi~G~NGsGKT~lLeAi~~l~~~~s---~R~~~~~~li~~----g~~~~~v~ 71 (365)
T TIGR00611 1 MYLSRLELTDFRNYDAVDL--ELSPGVNVIVGPNGQGKTNLLEAIYYLALGRS---HRTSRDKPLIRF----GAEAFVIE 71 (365)
T ss_pred CEEEEEEEeCCcceeeeEE--EECCCeEEEECCCCCCHHHHHHHHHHHcccCC---ccccchhhHHhC----CCCeEEEE
Confidence 9999999999999987654 69999999999999999999999999877644 577788899973 45688999
Q ss_pred EEEecCCCCCCCCCCCCCCeEEEEEEEEeCCceeEEECCeec-CHHHHHHHHHHcCCCCCCCceeeeCchhhHHhcCCch
Q 001073 81 IVFDNSDRSRSPLGYEDHPEITVTRQIVVGGRNKYLINGKLA-QPSQVQTLFHSVQLNVNNPHFLIMQGRITKVLNMKPP 159 (1163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~~~~~~~in~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Qg~v~~~~~~~p~ 159 (1163)
++|.+.+.. ..+.+...+.+.+ ....+||..+ +..++...+. + ++.|-+-..+...+|.
T Consensus 72 ~~~~~~~~~---------~~i~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~---------~-v~~~p~~~~L~~g~p~ 131 (365)
T TIGR00611 72 GRVSKGDRE---------VTIPLEGLLKKKG-KKAKVNIDGQDKLSDLAGLLP---------M-QLFAPEDLTLVKGSPK 131 (365)
T ss_pred EEEEeCCce---------EEEeEEEEEccCC-CeEEECCCCCcCHHHHHhhcc---------E-EEecCCCHHHhcCChH
Confidence 999754321 1112222222222 2466676544 5566666663 2 3344444557777999
Q ss_pred HHHHHHHHHhc
Q 001073 160 EILSMLEEAAG 170 (1163)
Q Consensus 160 ~~~~~~e~~~g 170 (1163)
.|+.+++..++
T Consensus 132 ~RR~fLD~~~~ 142 (365)
T TIGR00611 132 YRRRFLDWGLF 142 (365)
T ss_pred HHHHHHHHHHH
Confidence 99999996654
No 53
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.61 E-value=1.6e-15 Score=163.35 Aligned_cols=91 Identities=91% Similarity=1.315 Sum_probs=84.1
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhcccee
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLF 1142 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~ 1142 (1163)
....+..|||||+++++||.+|+...+.||++++|||||++||+..+..+.++|.+...+.++|+|||+++++..||++|
T Consensus 160 ~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~ 239 (251)
T cd03273 160 WKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLF 239 (251)
T ss_pred hcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEE
Confidence 34578899999999999999998655678899999999999999999999999988777889999999999999999999
Q ss_pred eeeeeCCceEE
Q 001073 1143 RTKFVDGVSTV 1153 (1163)
Q Consensus 1143 gv~~~~g~S~v 1153 (1163)
+|||++|+|+|
T Consensus 240 ~~~~~~~~~~~ 250 (251)
T cd03273 240 RTRFVDGTSTV 250 (251)
T ss_pred EEEeeCCEEec
Confidence 99999999997
No 54
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.60 E-value=1.1e-15 Score=153.39 Aligned_cols=82 Identities=54% Similarity=0.688 Sum_probs=65.2
Q ss_pred eeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEEEE
Q 001073 3 IKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIV 82 (1163)
Q Consensus 3 i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~~~ 82 (1163)
|++|++.|||||.+.++.+ +++++|+|+|||||||||||+||+|+||+++....|...+ .+++...+.+...|+|+++
T Consensus 1 i~~i~l~nf~~~~~~~~~~-~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~ 78 (178)
T cd03239 1 IKQITLKNFKSYRDETVVG-GSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLL-FLAGGGVKAGINSASVEIT 78 (178)
T ss_pred CcEEEEECccCCCCCEEec-CCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchh-hhcccccCCCCceEEEEEE
Confidence 6799999999999988763 3444999999999999999999999999887666555543 2223333467889999999
Q ss_pred EecC
Q 001073 83 FDNS 86 (1163)
Q Consensus 83 ~~~~ 86 (1163)
|++.
T Consensus 79 f~~~ 82 (178)
T cd03239 79 FDKS 82 (178)
T ss_pred EECc
Confidence 9875
No 55
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=99.60 E-value=4e-14 Score=152.54 Aligned_cols=141 Identities=26% Similarity=0.374 Sum_probs=108.2
Q ss_pred CceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEE
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVS 80 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~ 80 (1163)
|+|.++.+.||++|...+. +|+||+|++||+||+||||||.||.++- .++..|....+++|.. ++..+.|.
T Consensus 1 M~l~~L~L~nFRNy~~~~l--~~~p~~nvl~G~NgqGKTNlLEAI~~l~---~grS~Rt~~~~~lir~----~~~~~~i~ 71 (363)
T COG1195 1 MYLLSLLLRNFRNYAELDL--DLSPGVNVLVGENGQGKTNLLEAIYLLA---LGRSHRTSRDKELIRT----GADEAEIS 71 (363)
T ss_pred CceeeeehhhcCCccccee--ccCCCcEEEECCCCCchHHHHHHHHHHc---cccCccccchhHHHhc----CCccEEEE
Confidence 9999999999999998765 7999999999999999999999997763 2356788999999974 45678999
Q ss_pred EEEecCCCCCCCCCCCCCCeEEEEEEEEeCCceeEEECCeecC-HHHHHHHHHHcCCCCCCCceeeeCchhhHHhcCCch
Q 001073 81 IVFDNSDRSRSPLGYEDHPEITVTRQIVVGGRNKYLINGKLAQ-PSQVQTLFHSVQLNVNNPHFLIMQGRITKVLNMKPP 159 (1163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~~~~~~~in~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Qg~v~~~~~~~p~ 159 (1163)
..++... ...++.-.+.+.|+..-+|||.++. ..++...+.. .++...+. .+..-+|.
T Consensus 72 ~~v~~~~-----------~~~~~~~~~~~~g~~~vring~~~~~~~el~g~l~~---------vlf~Pedl-~Lv~G~P~ 130 (363)
T COG1195 72 ARVQRKG-----------REGTLGLQISKKGRRRVRINGTKARKLAELAGHLNV---------VLFTPEDL-GLVKGSPS 130 (363)
T ss_pred EEEeecc-----------ceeeeEEEeccCcceEEEECCcccccHHHHhhhCce---------EEeccccc-ccccCCHH
Confidence 9998642 2223444455567777999998776 6888888732 22222232 34456899
Q ss_pred HHHHHHHHHhch
Q 001073 160 EILSMLEEAAGT 171 (1163)
Q Consensus 160 ~~~~~~e~~~g~ 171 (1163)
.|+.+++...+.
T Consensus 131 ~RRrFLD~~l~~ 142 (363)
T COG1195 131 DRRRFLDWLLFQ 142 (363)
T ss_pred HHHHHHHHHHhc
Confidence 999999988864
No 56
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.53 E-value=1.3e-14 Score=141.08 Aligned_cols=93 Identities=23% Similarity=0.253 Sum_probs=79.7
Q ss_pred chhhhhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeC
Q 001073 1053 LEVCVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLK 1131 (1163)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~ 1131 (1163)
+.-+|+..++.+..|.+|||||+||+|||++||+ .|++++|||||++|||.-+..+.+.+..++ .+.+.|++||.
T Consensus 120 lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM----~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHE 195 (240)
T COG1126 120 LLEKVGLADKADAYPAQLSGGQQQRVAIARALAM----DPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHE 195 (240)
T ss_pred HHHHcCchhhhhhCccccCcHHHHHHHHHHHHcC----CCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEech
Confidence 4456777888888999999999999999999995 679999999999999999999999999876 46799999999
Q ss_pred cch-hhhccceeeeeeeCCce
Q 001073 1132 EGM-FNNANVLFRTKFVDGVS 1151 (1163)
Q Consensus 1132 ~~~-~~~a~~~~gv~~~~g~S 1151 (1163)
+.+ -+.||+++- |.+|+-
T Consensus 196 M~FAr~VadrviF--md~G~i 214 (240)
T COG1126 196 MGFAREVADRVIF--MDQGKI 214 (240)
T ss_pred hHHHHHhhheEEE--eeCCEE
Confidence 886 556999854 566643
No 57
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.52 E-value=2.7e-14 Score=146.42 Aligned_cols=93 Identities=39% Similarity=0.644 Sum_probs=82.5
Q ss_pred cccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhcc
Q 001073 1060 GGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNAN 1139 (1163)
Q Consensus 1060 ~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~ 1139 (1163)
.+....++..||||||++++||.++++..+.|+++++||||+++||+.+...+.++|.+...+.++|+|||++..+..||
T Consensus 104 ~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d 183 (197)
T cd03278 104 PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAAD 183 (197)
T ss_pred CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcc
Confidence 33445678999999999999999988655578899999999999999999999999998776789999999999999999
Q ss_pred ceeeeeee-CCceE
Q 001073 1140 VLFRTKFV-DGVST 1152 (1163)
Q Consensus 1140 ~~~gv~~~-~g~S~ 1152 (1163)
++++|++. +|+|+
T Consensus 184 ~v~~~~~~~~~~~~ 197 (197)
T cd03278 184 RLYGVTMQESGVSK 197 (197)
T ss_pred eEEEEEeccCCCCC
Confidence 99999996 49874
No 58
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.50 E-value=4e-14 Score=143.18 Aligned_cols=88 Identities=20% Similarity=0.296 Sum_probs=75.7
Q ss_pred hhcccccc-ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcc
Q 001073 1057 VAFGGVWK-QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEG 1133 (1163)
Q Consensus 1057 ~~~~~~~~-~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~ 1133 (1163)
++..+... ..|.+|||||+||||||++|+ .+|++++.||||++||..+...+++++.+.. .+..+|+|||++.
T Consensus 129 lgl~~~~~~~~p~eLSGGqqQRVAIARAL~----~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~ 204 (226)
T COG1136 129 LGLEDRLLKKKPSELSGGQQQRVAIARALI----NNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE 204 (226)
T ss_pred cCChhhhccCCchhcCHHHHHHHHHHHHHh----cCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 34443333 679999999999999999998 7889999999999999999999999999874 3679999999999
Q ss_pred hhhhccceeeeeeeCCc
Q 001073 1134 MFNNANVLFRTKFVDGV 1150 (1163)
Q Consensus 1134 ~~~~a~~~~gv~~~~g~ 1150 (1163)
+..+||+.|. +.+|.
T Consensus 205 lA~~~dr~i~--l~dG~ 219 (226)
T COG1136 205 LAKYADRVIE--LKDGK 219 (226)
T ss_pred HHHhCCEEEE--EeCCe
Confidence 9999999875 55665
No 59
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.50 E-value=2.2e-06 Score=111.21 Aligned_cols=19 Identities=11% Similarity=0.309 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001073 992 IIENDKSKIKKVIEELDEK 1010 (1163)
Q Consensus 992 ~l~~~~~~l~~~i~~l~~~ 1010 (1163)
.++..+..++..++.....
T Consensus 1608 kle~di~elE~~ld~ank~ 1626 (1930)
T KOG0161|consen 1608 KLEGDINELEIQLDHANKA 1626 (1930)
T ss_pred hhhcchHHHHHHHHHHHHh
Confidence 3444444555555444443
No 60
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.47 E-value=8e-14 Score=143.13 Aligned_cols=79 Identities=33% Similarity=0.505 Sum_probs=68.3
Q ss_pred eeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEEEE
Q 001073 3 IKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIV 82 (1163)
Q Consensus 3 i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~~~ 82 (1163)
|++|.+.||+||.+..+ +|++|+|+|+||||||||||++||+++||+......|+..+.++|+. +...+.|.++
T Consensus 1 i~~l~l~nfr~~~~~~l--~f~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~----~~~~~~i~~~ 74 (198)
T cd03276 1 IESITLKNFMCHRHLQI--EFGPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKD----GESSAKITVT 74 (198)
T ss_pred CeEEEEeCccceeeeEE--ecCCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhC----CCCeEEEEEE
Confidence 67999999999976543 79999999999999999999999999999877667788888999963 3457889999
Q ss_pred EecCC
Q 001073 83 FDNSD 87 (1163)
Q Consensus 83 ~~~~~ 87 (1163)
|++.+
T Consensus 75 ~~~~~ 79 (198)
T cd03276 75 LKNQG 79 (198)
T ss_pred EEcCC
Confidence 99864
No 61
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.46 E-value=1.6e-13 Score=147.11 Aligned_cols=98 Identities=36% Similarity=0.564 Sum_probs=85.8
Q ss_pred ccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC-CCeEEEEEeCcchhhh
Q 001073 1059 FGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP-HSQFIVVSLKEGMFNN 1137 (1163)
Q Consensus 1059 ~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~-~~q~i~it~~~~~~~~ 1137 (1163)
|++....++..|||||+++++||.+|++..+.||++++||||+++||+..+..+.++|.+..+ +.++|+|||+++++..
T Consensus 145 p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~ 224 (247)
T cd03275 145 PPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSK 224 (247)
T ss_pred CcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhh
Confidence 444455678999999999999999998755567899999999999999999999999988754 7899999999999999
Q ss_pred ccceeeeeee-C-CceEEEEe
Q 001073 1138 ANVLFRTKFV-D-GVSTVQRT 1156 (1163)
Q Consensus 1138 a~~~~gv~~~-~-g~S~v~~~ 1156 (1163)
||++|++++. + |.|+++..
T Consensus 225 ~d~i~~~~~~~~~~~~~~~~~ 245 (247)
T cd03275 225 ADALVGVYRDQECNSSKVLTL 245 (247)
T ss_pred CCeEEEEEecCCCCcceEEec
Confidence 9999999994 4 99998753
No 62
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.45 E-value=2.1e-13 Score=141.54 Aligned_cols=66 Identities=44% Similarity=0.760 Sum_probs=57.5
Q ss_pred CceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHH
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVY 67 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~ 67 (1163)
|+|++|++.|||+|.+.+++.++++.+++|+|||||||||+++||+|++|... ...|...+..++.
T Consensus 1 ~~~~~l~l~nfk~~~~~~~l~~~~~~i~~ivGpNGaGKSTll~~i~~~~G~~~-~~~~~~~i~~~~~ 66 (212)
T cd03274 1 LIITKLVLENFKSYAGEQVIGPFHKSFSAIVGPNGSGKSNVIDSMLFVFGFRA-SKMRQKKLSDLIH 66 (212)
T ss_pred CeEEEEEEECcccCCCCeeeccCCCCeEEEECCCCCCHHHHHHHHHHHhccCH-HHhhhhhHHHHhc
Confidence 89999999999999999888778889999999999999999999999999653 4455556777774
No 63
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.45 E-value=9.9e-14 Score=138.28 Aligned_cols=88 Identities=25% Similarity=0.319 Sum_probs=73.2
Q ss_pred hhhccc-cccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCc
Q 001073 1056 CVAFGG-VWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKE 1132 (1163)
Q Consensus 1056 ~~~~~~-~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~ 1132 (1163)
.|+.+. ...+.|..|||||+||+|||++|+ ..|+++|+||||++||......|++++.+..+ +-.||+|||+.
T Consensus 127 ~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~----~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl 202 (252)
T COG1124 127 QVGLPPSFLDRRPHELSGGQRQRIAIARALI----PEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL 202 (252)
T ss_pred HcCCCHHHHhcCchhcChhHHHHHHHHHHhc----cCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH
Confidence 444443 345789999999999999999998 47799999999999999999999999987654 56899999999
Q ss_pred chhhh-ccceeeeeeeCC
Q 001073 1133 GMFNN-ANVLFRTKFVDG 1149 (1163)
Q Consensus 1133 ~~~~~-a~~~~gv~~~~g 1149 (1163)
.++.+ ||+++= |.+|
T Consensus 203 ~~v~~~cdRi~V--m~~G 218 (252)
T COG1124 203 ALVEHMCDRIAV--MDNG 218 (252)
T ss_pred HHHHHHhhheee--eeCC
Confidence 98766 999843 5555
No 64
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.42 E-value=4.2e-13 Score=139.31 Aligned_cols=97 Identities=35% Similarity=0.581 Sum_probs=85.5
Q ss_pred hhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhh
Q 001073 1057 VAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFN 1136 (1163)
Q Consensus 1057 ~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~ 1136 (1163)
+..++.....+..|||||+++++||.++++....||+++|||||+++||+..+..+.++|.+..+++++|+|||++.++.
T Consensus 115 ~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~ 194 (212)
T cd03274 115 AQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFE 194 (212)
T ss_pred eccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHH
Confidence 33444445678899999999999999998755568899999999999999999999999998878899999999999999
Q ss_pred hccceeeeeeeCCceEE
Q 001073 1137 NANVLFRTKFVDGVSTV 1153 (1163)
Q Consensus 1137 ~a~~~~gv~~~~g~S~v 1153 (1163)
+||++++|+..|.+|+-
T Consensus 195 ~~d~v~~~~~~~~~~~~ 211 (212)
T cd03274 195 LADRLVGIYKTNNCTKS 211 (212)
T ss_pred hCCEEEEEEecCCcccc
Confidence 99999999999988763
No 65
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.41 E-value=6.9e-13 Score=142.87 Aligned_cols=90 Identities=40% Similarity=0.667 Sum_probs=82.3
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFR 1143 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~g 1143 (1163)
...+..|||||+++++||++|+++...|||+++||||+++||+.....+.+.|.+..+++++|++||+++++..||+++.
T Consensus 153 ~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~~d~i~~ 232 (243)
T cd03272 153 QQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEVADKFYG 232 (243)
T ss_pred cccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEE
Confidence 45788999999999999999986545678999999999999999999999999887668899999999999999999999
Q ss_pred eeeeCCceEE
Q 001073 1144 TKFVDGVSTV 1153 (1163)
Q Consensus 1144 v~~~~g~S~v 1153 (1163)
++..+|+|+|
T Consensus 233 l~~~~~~~~~ 242 (243)
T cd03272 233 VKFRNKVSTI 242 (243)
T ss_pred EEEECCEEee
Confidence 9999999986
No 66
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.40 E-value=3.5e-13 Score=133.47 Aligned_cols=85 Identities=28% Similarity=0.290 Sum_probs=72.9
Q ss_pred hhcccc-ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcc
Q 001073 1057 VAFGGV-WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEG 1133 (1163)
Q Consensus 1057 ~~~~~~-~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~ 1133 (1163)
|+.++. .+..|+.||||++.|+|||+++|+ .|+++++||||+||||.....|.++|+++. -+.++|+|||+..
T Consensus 132 VGL~~~~~~~~PsELSGGM~KRvaLARAial----dPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~ 207 (263)
T COG1127 132 VGLRGAAADLYPSELSGGMRKRVALARAIAL----DPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD 207 (263)
T ss_pred cCCChhhhhhCchhhcchHHHHHHHHHHHhc----CCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH
Confidence 455554 567899999999999999999996 669999999999999999999999998864 3789999999965
Q ss_pred -hhhhccceeeee
Q 001073 1134 -MFNNANVLFRTK 1145 (1163)
Q Consensus 1134 -~~~~a~~~~gv~ 1145 (1163)
++.+||+++-+.
T Consensus 208 s~~~i~Drv~~L~ 220 (263)
T COG1127 208 SLLTIADRVAVLA 220 (263)
T ss_pred HHHhhhceEEEEe
Confidence 688899986443
No 67
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.39 E-value=4.6e-09 Score=119.28 Aligned_cols=106 Identities=25% Similarity=0.273 Sum_probs=85.9
Q ss_pred cchhhhhcc-ccccccc-cccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEE
Q 001073 1052 GLEVCVAFG-GVWKQSL-SELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVS 1129 (1163)
Q Consensus 1052 ~~~~~~~~~-~~~~~~~-~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it 1129 (1163)
.+++.+.+. |.+.+|+ ...||||-+|+.||+-.++......|-+||||+|+|.--.-...|++.|+.++.++|+|+||
T Consensus 412 ~VeF~istNpG~~~~PL~KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~~~QVl~VT 491 (557)
T COG0497 412 KVEFLISTNPGEPLKPLAKVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSEHHQVLCVT 491 (557)
T ss_pred eEEEEEeCCCCCCCccHHhhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhcCceEEEEe
Confidence 345555543 3333332 45699999999999998887777789999999999999999999999999999999999999
Q ss_pred eCcchhhhccceeeeeeeC--C--ceEEEEee
Q 001073 1130 LKEGMFNNANVLFRTKFVD--G--VSTVQRTV 1157 (1163)
Q Consensus 1130 ~~~~~~~~a~~~~gv~~~~--g--~S~v~~~~ 1157 (1163)
|=|..-.+||.=|-|.... | +|.|..++
T Consensus 492 HlPQVAa~ad~H~~V~K~~~~~~T~s~V~~L~ 523 (557)
T COG0497 492 HLPQVAAMADTHFLVEKESEDGRTESRVRPLD 523 (557)
T ss_pred cHHHHHhhhcceEEEEEecCCCceEEeeeeCC
Confidence 9999999999999999853 3 55555443
No 68
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.38 E-value=1.4e-12 Score=131.19 Aligned_cols=83 Identities=54% Similarity=0.820 Sum_probs=76.4
Q ss_pred cChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC-CCeEEEEEeCcchhhhccceeeeeeeC
Q 001073 1070 LSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP-HSQFIVVSLKEGMFNNANVLFRTKFVD 1148 (1163)
Q Consensus 1070 lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~-~~q~i~it~~~~~~~~a~~~~gv~~~~ 1148 (1163)
|||||+++++||++++.+.+.+||++|||||+++||+.+...+.++|..... +.++|+|||++.++..||+++.|+...
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~~~ 174 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLFVH 174 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEEeC
Confidence 9999999999999998877788999999999999999999999999987644 589999999999999999999999988
Q ss_pred CceE
Q 001073 1149 GVST 1152 (1163)
Q Consensus 1149 g~S~ 1152 (1163)
++|+
T Consensus 175 ~~~~ 178 (178)
T cd03239 175 GVST 178 (178)
T ss_pred CccC
Confidence 8874
No 69
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=99.37 E-value=4.9e-13 Score=104.55 Aligned_cols=49 Identities=39% Similarity=0.560 Sum_probs=42.4
Q ss_pred eeEEEecCccccCCCccccCCCC-C-ceEEecCCCCchhhHHHHHHHHhCCCc
Q 001073 3 IKEICLEGFKSYASRTVVPGFDP-Y-FNAITGLNGSGKSNILDSICFVLGITN 53 (1163)
Q Consensus 3 i~~i~l~nFks~~~~~~~~~~~~-~-~~~ivG~NGsGKS~i~~ai~~~lg~~~ 53 (1163)
+.+|.|.||.+|.+. .+ +|++ | +++|+||||||||||||||.++|.+..
T Consensus 1 L~rl~L~Nw~~f~~~-~~-~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 1 LTRLQLVNWGSFDGE-TI-DFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred CcEEEEeccCccCCe-EE-eecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 478999999999984 44 6885 3 899999999999999999999997644
No 70
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.37 E-value=4.9e-13 Score=138.78 Aligned_cols=89 Identities=24% Similarity=0.336 Sum_probs=74.9
Q ss_pred hhhhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCc
Q 001073 1055 VCVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKE 1132 (1163)
Q Consensus 1055 ~~~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~ 1132 (1163)
..|.....+.+++..||||||+|+|||-+||+ .|.+++|||||++||+.+++.++.++.++.. +..+|++||+.
T Consensus 124 ~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~----~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~ 199 (235)
T COG1122 124 ELVGLEELLDRPPFNLSGGQKQRVAIAGVLAM----GPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDL 199 (235)
T ss_pred HHcCchhhccCCccccCCcceeeHHhhHHHHc----CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcH
Confidence 34455556678999999999999999999995 6799999999999999999999999998754 46899999998
Q ss_pred ch-hhhccceeeeeeeCC
Q 001073 1133 GM-FNNANVLFRTKFVDG 1149 (1163)
Q Consensus 1133 ~~-~~~a~~~~gv~~~~g 1149 (1163)
+. ..+||++|- |.+|
T Consensus 200 ~~~~~~ad~v~v--l~~G 215 (235)
T COG1122 200 ELVLEYADRVVV--LDDG 215 (235)
T ss_pred HHHHhhCCEEEE--EECC
Confidence 75 556999864 4444
No 71
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=99.37 E-value=1.4e-12 Score=123.26 Aligned_cols=116 Identities=28% Similarity=0.499 Sum_probs=95.4
Q ss_pred CcccccccccccccCCchhHHHHHhhccCcccEEEcCcHHHHHHHHcccc--CCceEEeecCCCCCCCCChhhHHHHHhh
Q 001073 505 AKVKGVVAKLIKVKDSSTMTALEVTAGGKLFNVIVDTESTGKQLLQNGDL--RRRVTIIPLNKIQSHTVPPRVQQAAVRL 582 (1163)
Q Consensus 505 ~~~~G~v~~~i~v~~~~~~~aie~~l~~~l~~vvv~~~~~a~~ll~~~~~--~~~~~~~~l~~l~~~~v~~~~~~~~~~~ 582 (1163)
.+++|+|+++|+| ++.|..|++.++|+++++|||++.++|..++++.+. .++.+|+|++.+.......... ..
T Consensus 2 ~gv~G~l~dli~v-~~~~~~Ave~~LG~~l~~iVV~~~~~a~~~i~~l~~~~~gr~~~i~l~~~~~~~~~~~~~----~~ 76 (120)
T PF06470_consen 2 PGVLGRLADLIEV-DPKYEKAVEAALGGRLQAIVVEDEETAKKIIEFLKENKLGRATFIPLDKIRSRSSASSAD----QI 76 (120)
T ss_dssp TTEEEEGGGSEEE-SGGGHHHHHHHHGGGGGSEEESSHHHHHHHHHHHHHTTSCEEEEEETTTTGGGTTSCCCG----GH
T ss_pred CCeeeeHHhceec-CHHHHHHHHHHHHHhhceEEECcHHHHHHHHHHHhhccCCeEEEEECccccccccccchh----hc
Confidence 3789999999999 555999999999999999999999999999987653 3889999999874432221000 00
Q ss_pred cCCchhHhhhhccCC-ChHHHHHHHHhcCCeEEecChHHHHHHH
Q 001073 583 VGKENAELALSLVGY-SDELKTAMEYVFGSTFVCKSIDAAKEVA 625 (1163)
Q Consensus 583 ~~~~~~~~l~d~i~~-~~aie~al~~~l~nivv~~~~~~a~~I~ 625 (1163)
..|+.+.+++|+|+| ++.+.+++.++|+++++|++.+.|..|+
T Consensus 77 ~~~~~~~~l~d~i~~~d~~~~~~~~~llg~~~vv~~l~~A~~la 120 (120)
T PF06470_consen 77 RPPGGAGPLIDLIEFPDEEYRPALEFLLGDVVVVDDLEEARKLA 120 (120)
T ss_dssp HSTTSEEEGGGGEEESCGGGHHHHHHHHTTEEEESSHHHHHHHH
T ss_pred cCCcchHHHHHhcccCcHHHHHHHHHHcCCEEEECCHHHHHHhC
Confidence 015788899999999 8899999999999999999999998764
No 72
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.36 E-value=6.5e-13 Score=139.06 Aligned_cols=81 Identities=30% Similarity=0.408 Sum_probs=64.0
Q ss_pred CceeEEEecCccccCCCccccCCCCC----ceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcce
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPY----FNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITK 76 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~----~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~ 76 (1163)
|++++|+++||+||.+.+.+ +|+++ +++|+||||||||||++||+|+|++......+.....+.+. .+...
T Consensus 1 m~~~~i~l~nf~~y~~~~~i-~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~----~~~~~ 75 (213)
T cd03279 1 MKPLKLELKNFGPFREEQVI-DFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFA----PGEDT 75 (213)
T ss_pred CEEEEEEEECCcCcCCceEE-eCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhc----CCCcc
Confidence 99999999999999888777 58766 99999999999999999999999655544333333345553 24567
Q ss_pred EEEEEEEecC
Q 001073 77 ATVSIVFDNS 86 (1163)
Q Consensus 77 a~v~~~~~~~ 86 (1163)
+.|.++|++.
T Consensus 76 ~~v~~~f~~~ 85 (213)
T cd03279 76 AEVSFTFQLG 85 (213)
T ss_pred EEEEEEEEEC
Confidence 8899999874
No 73
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.35 E-value=1.3e-12 Score=134.30 Aligned_cols=86 Identities=22% Similarity=0.305 Sum_probs=75.1
Q ss_pred hhhhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcc
Q 001073 1055 VCVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEG 1133 (1163)
Q Consensus 1055 ~~~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~ 1133 (1163)
-.|+..+..+++++.|||||+||+-||++|| .+|++++||||++|+|+..+..|.++|.++. .+..+++|||+..
T Consensus 125 ~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~----~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~ 200 (254)
T COG1121 125 ERVGMEDLRDRQIGELSGGQKQRVLLARALA----QNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG 200 (254)
T ss_pred HHcCchhhhCCcccccCcHHHHHHHHHHHhc----cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence 3455566677899999999999999999998 7889999999999999999999999999864 3789999999987
Q ss_pred -hhhhccceeee
Q 001073 1134 -MFNNANVLFRT 1144 (1163)
Q Consensus 1134 -~~~~a~~~~gv 1144 (1163)
.+.++|+++..
T Consensus 201 ~v~~~~D~vi~L 212 (254)
T COG1121 201 LVMAYFDRVICL 212 (254)
T ss_pred HhHhhCCEEEEE
Confidence 57889988643
No 74
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.35 E-value=2.5e-12 Score=132.96 Aligned_cols=90 Identities=23% Similarity=0.451 Sum_probs=67.3
Q ss_pred eeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcch-hhhhhhhHHHHHhhccCCcceEEEEE
Q 001073 3 IKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQ-QVRASNLQELVYKQGQAGITKATVSI 81 (1163)
Q Consensus 3 i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~-~~r~~~~~~~i~~~~~~~~~~a~v~~ 81 (1163)
|++|++.||+||.+.+.+ .|++|+++|+|||||||||+++||+|+|.+.... ..+.....+++.. +...+.|.+
T Consensus 1 ~~~l~l~nfr~~~~~~~l-~~~~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~----~~~~~~v~~ 75 (204)
T cd03240 1 IDKLSIRNIRSFHERSEI-EFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE----GEVRAQVKL 75 (204)
T ss_pred CcEEEEECcccccCceEE-ecCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC----CCCcEEEEE
Confidence 679999999998777776 6999999999999999999999999999554332 2222234566652 356789999
Q ss_pred EEecCCCCCCCCCCCCCCeEEEEEEE
Q 001073 82 VFDNSDRSRSPLGYEDHPEITVTRQI 107 (1163)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~i~r~i 107 (1163)
.|++.+ .+.+++.|.+
T Consensus 76 ~f~~~~----------~~~~~v~r~~ 91 (204)
T cd03240 76 AFENAN----------GKKYTITRSL 91 (204)
T ss_pred EEEeCC----------CCEEEEEEEh
Confidence 998642 1456677754
No 75
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.33 E-value=2.6e-12 Score=131.87 Aligned_cols=84 Identities=40% Similarity=0.716 Sum_probs=66.7
Q ss_pred eeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccC--CcceEEEE
Q 001073 3 IKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQA--GITKATVS 80 (1163)
Q Consensus 3 i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~--~~~~a~v~ 80 (1163)
|++|.+.||+||+....+ .|++|+++|+|||||||||+++||+|+++.......|+....++++.+... ....+.|.
T Consensus 1 ~~~~~~~~fr~~~~~~~l-~~~~g~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (197)
T cd03278 1 LKKLELKGFKSFADKTTI-PFPPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVT 79 (197)
T ss_pred CcEEEEeCCcCcCCCeee-ecCCCcEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEE
Confidence 578999999999555445 688999999999999999999999999987666667888888888754321 12357899
Q ss_pred EEEecCC
Q 001073 81 IVFDNSD 87 (1163)
Q Consensus 81 ~~~~~~~ 87 (1163)
++|++.+
T Consensus 80 ~vfq~~~ 86 (197)
T cd03278 80 LTFDNSD 86 (197)
T ss_pred EEEEcCC
Confidence 9999753
No 76
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.31 E-value=2.3e-12 Score=124.82 Aligned_cols=73 Identities=25% Similarity=0.305 Sum_probs=64.5
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~-~~~a~~ 1140 (1163)
.++...|||||+||.|||+++|+ +|.+++||||+++|||....+|-++|.++.+.-++|||||++.= ...+|.
T Consensus 144 ~~sa~~LSGGQQQRLcIARalAv----~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~ 217 (253)
T COG1117 144 HKSALGLSGGQQQRLCIARALAV----KPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDY 217 (253)
T ss_pred hCCccCCChhHHHHHHHHHHHhc----CCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHh
Confidence 45778899999999999999995 77999999999999999999999999999999999999999753 334553
No 77
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.31 E-value=1.8e-12 Score=133.43 Aligned_cols=85 Identities=21% Similarity=0.243 Sum_probs=73.7
Q ss_pred hhhhhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhh--CCCCeEEEEEeC
Q 001073 1054 EVCVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH--FPHSQFIVVSLK 1131 (1163)
Q Consensus 1054 ~~~~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~--~~~~q~i~it~~ 1131 (1163)
.-.|+.+++.+..|.+|||||||||+||++|| ..|.++++||||++|||.-...|..+|+.. .-+.++++|||-
T Consensus 126 LelVgL~dk~~~yP~qLSGGQKQRVaIARALa----~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHE 201 (339)
T COG1135 126 LELVGLSDKADRYPAQLSGGQKQRVAIARALA----NNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHE 201 (339)
T ss_pred HHHcCChhhhccCchhcCcchhhHHHHHHHHh----cCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEech
Confidence 34566777778899999999999999999999 577999999999999999999999999875 357899999999
Q ss_pred cchhh-hcccee
Q 001073 1132 EGMFN-NANVLF 1142 (1163)
Q Consensus 1132 ~~~~~-~a~~~~ 1142 (1163)
++.+. .||++.
T Consensus 202 m~Vvk~ic~rVa 213 (339)
T COG1135 202 MEVVKRICDRVA 213 (339)
T ss_pred HHHHHHHhhhhe
Confidence 98654 588874
No 78
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.31 E-value=3.9e-12 Score=128.59 Aligned_cols=90 Identities=22% Similarity=0.220 Sum_probs=75.5
Q ss_pred hhhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhh--CCCCeEEEEEeCc-
Q 001073 1056 CVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH--FPHSQFIVVSLKE- 1132 (1163)
Q Consensus 1056 ~~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~--~~~~q~i~it~~~- 1132 (1163)
.|+..+..+..|.+||||+|||+|||++|+ ..|++++||||.++||+..+..+.+.|... ..+.++++|||+.
T Consensus 117 ~VgL~~~~~~~P~qLSGGMrQRVaiARAL~----~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~ 192 (248)
T COG1116 117 LVGLAGFEDKYPHQLSGGMRQRVAIARALA----TRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD 192 (248)
T ss_pred HcCCcchhhcCccccChHHHHHHHHHHHHh----cCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 445556667789999999999999999998 578999999999999999999988877653 3568999999995
Q ss_pred chhhhccceeeeeeeCC
Q 001073 1133 GMFNNANVLFRTKFVDG 1149 (1163)
Q Consensus 1133 ~~~~~a~~~~gv~~~~g 1149 (1163)
+-+..||++|=.+..+|
T Consensus 193 EAv~LsdRivvl~~~P~ 209 (248)
T COG1116 193 EAVYLADRVVVLSNRPG 209 (248)
T ss_pred HHHhhhCEEEEecCCCc
Confidence 56888999987666553
No 79
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.30 E-value=3.7e-12 Score=131.77 Aligned_cols=81 Identities=22% Similarity=0.358 Sum_probs=71.3
Q ss_pred ccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcch-h
Q 001073 1059 FGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGM-F 1135 (1163)
Q Consensus 1059 ~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~-~ 1135 (1163)
......+.+..|||||||++.||.+|| ..||+++|||||++||..|...++++|+.+. .+..+|+++|++++ .
T Consensus 128 ~~~la~r~~~~LSGGerQrv~iArALa----Q~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ 203 (258)
T COG1120 128 LEHLADRPVDELSGGERQRVLIARALA----QETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAA 203 (258)
T ss_pred cHHHhcCcccccChhHHHHHHHHHHHh----cCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 334456789999999999999999998 7889999999999999999999999999865 46889999999986 7
Q ss_pred hhccceee
Q 001073 1136 NNANVLFR 1143 (1163)
Q Consensus 1136 ~~a~~~~g 1143 (1163)
.+||+++-
T Consensus 204 ryad~~i~ 211 (258)
T COG1120 204 RYADHLIL 211 (258)
T ss_pred HhCCEEEE
Confidence 77998864
No 80
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.29 E-value=6e-12 Score=116.90 Aligned_cols=89 Identities=19% Similarity=0.258 Sum_probs=77.2
Q ss_pred cchhhhhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhh--CCCCeEEEEE
Q 001073 1052 GLEVCVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH--FPHSQFIVVS 1129 (1163)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~--~~~~q~i~it 1129 (1163)
.+...|+......-.|.+|||||+||||||++|| ..|.++|-||||.+||...-..|.+++..+ -.+++.|+||
T Consensus 129 ~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa----~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVT 204 (228)
T COG4181 129 ALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFA----GRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVT 204 (228)
T ss_pred HHHHHhCcccccccCccccCchHHHHHHHHHHhc----CCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEe
Confidence 3455677776666789999999999999999998 577999999999999999999999998764 3578999999
Q ss_pred eCcchhhhccceeee
Q 001073 1130 LKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1130 ~~~~~~~~a~~~~gv 1144 (1163)
|++.+-..|++++.+
T Consensus 205 HD~~LA~Rc~R~~r~ 219 (228)
T COG4181 205 HDPQLAARCDRQLRL 219 (228)
T ss_pred CCHHHHHhhhheeee
Confidence 999999999998763
No 81
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.28 E-value=5.1e-12 Score=118.84 Aligned_cols=89 Identities=25% Similarity=0.307 Sum_probs=75.6
Q ss_pred cchhhhhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEE
Q 001073 1052 GLEVCVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVS 1129 (1163)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it 1129 (1163)
.+.-.|+..+..++-|.+||||||||+|||+.|. .+-|+++||||.++|||.-+..+..++...+ .+.++++||
T Consensus 112 ~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclv----R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVT 187 (231)
T COG3840 112 AAAAQVGLAGFLKRLPGELSGGQRQRVALARCLV----REQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVT 187 (231)
T ss_pred HHHHHhChhhHhhhCccccCchHHHHHHHHHHHh----ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEe
Confidence 4445677788878889999999999999999886 7889999999999999999999999988765 467899999
Q ss_pred eCcc-hhhhccceeee
Q 001073 1130 LKEG-MFNNANVLFRT 1144 (1163)
Q Consensus 1130 ~~~~-~~~~a~~~~gv 1144 (1163)
|.++ ....||+++-+
T Consensus 188 H~~~Da~~ia~~~~fl 203 (231)
T COG3840 188 HHPEDAARIADRVVFL 203 (231)
T ss_pred CCHHHHHHhhhceEEE
Confidence 9976 56678887543
No 82
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.27 E-value=1.3e-11 Score=134.57 Aligned_cols=95 Identities=25% Similarity=0.276 Sum_probs=83.6
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFR 1143 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~g 1143 (1163)
......|||||+++++||+.+++..+.+||++|||||+++||+.....+.++|.....+.++|+|||++.+...||+++.
T Consensus 165 ~~~~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~ 244 (276)
T cd03241 165 KPLAKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFL 244 (276)
T ss_pred chhhhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEE
Confidence 34566899999999999987765444589999999999999999999999999887778899999999999999999999
Q ss_pred eee-eCCceEEEEeec
Q 001073 1144 TKF-VDGVSTVQRTVA 1158 (1163)
Q Consensus 1144 v~~-~~g~S~v~~~~~ 1158 (1163)
+.. .+|+|+++++.-
T Consensus 245 l~~~~~~~~~~~~~~~ 260 (276)
T cd03241 245 VEKEVEGGRTVTKVRE 260 (276)
T ss_pred EEEecCCCeEEEEhhh
Confidence 999 569999998753
No 83
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.26 E-value=6.7e-12 Score=132.69 Aligned_cols=76 Identities=22% Similarity=0.326 Sum_probs=67.6
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcchhhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGMFNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~~~~a~~~ 1141 (1163)
.+.+..||||||++++||.+|+ .+||+++||||+++||+.++..+.++|.+... +..+|++||+...+..||++
T Consensus 135 ~~~~~~LS~G~~qrv~la~al~----~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v 210 (218)
T cd03255 135 NHYPSELSGGQQQRVAIARALA----NDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRI 210 (218)
T ss_pred hcChhhcCHHHHHHHHHHHHHc----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEE
Confidence 4567899999999999999987 68899999999999999999999999988643 68999999999887789987
Q ss_pred ee
Q 001073 1142 FR 1143 (1163)
Q Consensus 1142 ~g 1143 (1163)
+-
T Consensus 211 ~~ 212 (218)
T cd03255 211 IE 212 (218)
T ss_pred EE
Confidence 54
No 84
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.26 E-value=7.2e-05 Score=99.61 Aligned_cols=176 Identities=14% Similarity=0.220 Sum_probs=120.9
Q ss_pred ceeEEEecCccccC----CCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhc--cCCcc
Q 001073 2 YIKEICLEGFKSYA----SRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQG--QAGIT 75 (1163)
Q Consensus 2 ~i~~i~l~nFks~~----~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~--~~~~~ 75 (1163)
.|++|.|.||+||+ +.++| +|++|+++|+||||||||||++||+|||+|..+...++. .+||... ..+..
T Consensus 2 ~~~kl~i~g~rSf~~~~~~~~~I-~F~~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~---~~i~~~~~~~~~~~ 77 (1311)
T TIGR00606 2 KFLKMSILGVRSFGIEDKDKQII-DFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGN---TFVHDPKVAQETDV 77 (1311)
T ss_pred ccceeeeeceecCCCccccceee-ecccceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCc---eEecCCCcCccHhh
Confidence 57899999999996 35566 799999999999999999999999999976543333332 2454221 12245
Q ss_pred eEEEEEEEecCCCCCCCCCCCCCCeEEEEEEEEeC--C----------ceeEEECCeecCH----HHHHH-HHHHcCCCC
Q 001073 76 KATVSIVFDNSDRSRSPLGYEDHPEITVTRQIVVG--G----------RNKYLINGKLAQP----SQVQT-LFHSVQLNV 138 (1163)
Q Consensus 76 ~a~v~~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~--~----------~~~~~in~~~~~~----~~~~~-~~~~~~~~~ 138 (1163)
.|.|.++|.+.+ ...++|.|.+... + ...|+.||..++. .++.. +...+|+..
T Consensus 78 ~a~V~l~F~~~~----------g~~~~v~R~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~e~~~~i~~~lGv~~ 147 (1311)
T TIGR00606 78 RAQIRLQFRDVN----------GEECAVVRSMVCTQKTKKTEFKTLEGVITRYKHGEKVSLSSKCAEIDREMISHLGVSK 147 (1311)
T ss_pred hheeEEEEEcCC----------CCEEEEEeeeeeeeccCcccchhhhhhheecCCCceeeccccHHHHHHHHHHHhCCCH
Confidence 789999996432 2456777866321 1 1346678865443 35543 333557775
Q ss_pred C--CCceeeeCchhhHHhcCCchHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhH
Q 001073 139 N--NPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKV 192 (1163)
Q Consensus 139 ~--~~~~~~~Qg~v~~~~~~~p~~~~~~~e~~~g~~~~~~~~~~~~~~l~~~~~~~ 192 (1163)
. +...|++||++. +..+.|.+|..+|++++|+..|..-.+.+..........+
T Consensus 148 ~~f~~vi~~~Qge~~-~~~~~~~~rk~~~d~if~~~~y~k~~~~~~~~~k~~~~~~ 202 (1311)
T TIGR00606 148 AVLNNVIFCHQEDSN-WPLSEGKALKQKFDEIFSATRYIKALETLRQVRQTQGQKV 202 (1311)
T ss_pred HHHhhceeeCCcccc-cccCChHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3 445578999996 6678999999999999999999765554444444443333
No 85
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.25 E-value=1.2e-11 Score=130.18 Aligned_cols=78 Identities=23% Similarity=0.314 Sum_probs=68.3
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccc
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~ 1140 (1163)
..+++..||||||++++||++|+ .+|+++||||||++||+..+..+.++|.+.. .+..+|++||+...+ ..||+
T Consensus 126 ~~~~~~~LSgG~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~ 201 (213)
T cd03235 126 ADRQIGELSGGQQQRVLLARALV----QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDR 201 (213)
T ss_pred HhCCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 34578899999999999999998 5889999999999999999999999998764 568899999998765 57999
Q ss_pred eeee
Q 001073 1141 LFRT 1144 (1163)
Q Consensus 1141 ~~gv 1144 (1163)
++-+
T Consensus 202 i~~l 205 (213)
T cd03235 202 VLLL 205 (213)
T ss_pred EEEE
Confidence 8754
No 86
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.25 E-value=7e-12 Score=124.77 Aligned_cols=78 Identities=23% Similarity=0.249 Sum_probs=68.3
Q ss_pred ccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCc-chhhh
Q 001073 1061 GVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKE-GMFNN 1137 (1163)
Q Consensus 1061 ~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~-~~~~~ 1137 (1163)
....+.|+.|||||+||+.++++|| ..||+++||||..+|||.++..+.+.+.+.. -+.++|+|||+. +-+..
T Consensus 127 ~~~~RyP~eLSGGQQQRVGv~RALA----adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kL 202 (309)
T COG1125 127 EYADRYPHELSGGQQQRVGVARALA----ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKL 202 (309)
T ss_pred HHhhcCchhcCcchhhHHHHHHHHh----cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhh
Confidence 3456789999999999999999999 5779999999999999999999999877643 378999999996 46888
Q ss_pred cccee
Q 001073 1138 ANVLF 1142 (1163)
Q Consensus 1138 a~~~~ 1142 (1163)
||++.
T Consensus 203 adri~ 207 (309)
T COG1125 203 ADRIA 207 (309)
T ss_pred hceEE
Confidence 99984
No 87
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.24 E-value=1.3e-11 Score=130.15 Aligned_cols=76 Identities=18% Similarity=0.295 Sum_probs=66.7
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhh-hccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFN-NANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~-~a~~~ 1141 (1163)
.+.+..|||||+++++||.+|+ .+|++++|||||++||+.++..+.++|.+.. .+..+|+|||++..+. .||++
T Consensus 133 ~~~~~~LSgG~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i 208 (216)
T TIGR00960 133 HALPMQLSGGEQQRVAIARAIV----HKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRT 208 (216)
T ss_pred hCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE
Confidence 4567899999999999999998 6889999999999999999999999998764 4688999999988764 69987
Q ss_pred ee
Q 001073 1142 FR 1143 (1163)
Q Consensus 1142 ~g 1143 (1163)
+-
T Consensus 209 ~~ 210 (216)
T TIGR00960 209 LT 210 (216)
T ss_pred EE
Confidence 54
No 88
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.24 E-value=1.2e-11 Score=117.55 Aligned_cols=80 Identities=18% Similarity=0.225 Sum_probs=70.1
Q ss_pred hhhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcch
Q 001073 1056 CVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGM 1134 (1163)
Q Consensus 1056 ~~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~ 1134 (1163)
.|+..++...-|.+|||||+||++||+++. +.|++++-||||.+|||.....+++++.+.. .++++++.||+..+
T Consensus 124 ~VgL~~k~~~lP~~LSGGEQQRvaIARAiV----~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l 199 (223)
T COG2884 124 LVGLKHKARALPSQLSGGEQQRVAIARAIV----NQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL 199 (223)
T ss_pred HhccchhhhcCccccCchHHHHHHHHHHHc----cCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH
Confidence 455566666678999999999999999986 8889999999999999999999999998874 58999999999999
Q ss_pred hhhcc
Q 001073 1135 FNNAN 1139 (1163)
Q Consensus 1135 ~~~a~ 1139 (1163)
+....
T Consensus 200 v~~~~ 204 (223)
T COG2884 200 VNRMR 204 (223)
T ss_pred HHhcc
Confidence 87654
No 89
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.24 E-value=1.3e-11 Score=130.86 Aligned_cols=80 Identities=25% Similarity=0.354 Sum_probs=69.2
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchhhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMFNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~~~a~~~ 1141 (1163)
.+.+..|||||+++++||++|+ .+|+++||||||++||+.++..+.++|.... .+..+|++||+...+..+|++
T Consensus 136 ~~~~~~LS~G~~qrv~laral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v 211 (221)
T TIGR02211 136 NHRPSELSGGERQRVAIARALV----NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRV 211 (221)
T ss_pred hCChhhCCHHHHHHHHHHHHHh----CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEE
Confidence 3567899999999999999998 6889999999999999999999999998764 368999999999988888887
Q ss_pred eeeeeeCC
Q 001073 1142 FRTKFVDG 1149 (1163)
Q Consensus 1142 ~gv~~~~g 1149 (1163)
+- |.+|
T Consensus 212 ~~--l~~G 217 (221)
T TIGR02211 212 LE--MKDG 217 (221)
T ss_pred EE--EeCC
Confidence 55 3454
No 90
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.24 E-value=1.5e-11 Score=125.26 Aligned_cols=80 Identities=25% Similarity=0.425 Sum_probs=69.5
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcchh-hhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~~-~~a~~ 1140 (1163)
...+..|||||+++++||++|+ .+|++++||||+++||+.++..+.++|..... +.++|++||++..+ ..||+
T Consensus 92 ~~~~~~LS~G~~qrl~laral~----~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~ 167 (180)
T cd03214 92 DRPFNELSGGERQRVLLARALA----QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADR 167 (180)
T ss_pred cCCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 4568899999999999999998 58899999999999999999999999987644 68999999998875 78999
Q ss_pred eeeeeeeCC
Q 001073 1141 LFRTKFVDG 1149 (1163)
Q Consensus 1141 ~~gv~~~~g 1149 (1163)
++- +.+|
T Consensus 168 ~~~--l~~g 174 (180)
T cd03214 168 VIL--LKDG 174 (180)
T ss_pred EEE--EECC
Confidence 875 4455
No 91
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.24 E-value=1.2e-11 Score=130.17 Aligned_cols=80 Identities=28% Similarity=0.289 Sum_probs=68.7
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~-~~~a~~ 1140 (1163)
.+.+..||||||++++||++|+ .+||++||||||++||+.++..+.++|.+.. .+.++|++||++.. ...||+
T Consensus 125 ~~~~~~LSgG~~qrl~la~al~----~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 200 (213)
T cd03259 125 NRYPHELSGGQQQRVALARALA----REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADR 200 (213)
T ss_pred hcChhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCE
Confidence 3567899999999999999997 6889999999999999999999999998764 37899999999875 567998
Q ss_pred eeeeeeeCC
Q 001073 1141 LFRTKFVDG 1149 (1163)
Q Consensus 1141 ~~gv~~~~g 1149 (1163)
++-+ .+|
T Consensus 201 v~~l--~~G 207 (213)
T cd03259 201 IAVM--NEG 207 (213)
T ss_pred EEEE--ECC
Confidence 8653 455
No 92
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.24 E-value=1.9e-11 Score=127.70 Aligned_cols=80 Identities=24% Similarity=0.385 Sum_probs=68.8
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhh-CCCCeEEEEEeCcchh-hhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH-FPHSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~-~~~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
.+.+..||||||++++||++|+ .+|++++||||+++||+..+..+.++|.+. ..+..+|++||++..+ ..||++
T Consensus 121 ~~~~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i 196 (205)
T cd03226 121 ERHPLSLSGGQKQRLAIAAALL----SGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRV 196 (205)
T ss_pred CCCchhCCHHHHHHHHHHHHHH----hCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE
Confidence 4567899999999999999998 578999999999999999999999999876 4568899999998866 479988
Q ss_pred eeeeeeCC
Q 001073 1142 FRTKFVDG 1149 (1163)
Q Consensus 1142 ~gv~~~~g 1149 (1163)
+-+ .+|
T Consensus 197 ~~l--~~G 202 (205)
T cd03226 197 LLL--ANG 202 (205)
T ss_pred EEE--ECC
Confidence 653 454
No 93
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.23 E-value=1.5e-11 Score=129.28 Aligned_cols=76 Identities=25% Similarity=0.315 Sum_probs=66.7
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhh-hccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFN-NANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~-~a~~~ 1141 (1163)
.+.+..|||||+++++||++|+ .+|+++||||||+|||+.++..+.++|.+.. .+..+|++||++..+. .||++
T Consensus 129 ~~~~~~LSgG~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i 204 (211)
T cd03225 129 DRSPFTLSGGQKQRVAIAGVLA----MDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRV 204 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 3567899999999999999987 6889999999999999999999999998764 4689999999988765 49988
Q ss_pred ee
Q 001073 1142 FR 1143 (1163)
Q Consensus 1142 ~g 1143 (1163)
+-
T Consensus 205 ~~ 206 (211)
T cd03225 205 IV 206 (211)
T ss_pred EE
Confidence 65
No 94
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.23 E-value=1.6e-11 Score=130.99 Aligned_cols=84 Identities=27% Similarity=0.332 Sum_probs=70.4
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchhh-hccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMFN-NANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~~-~a~~ 1140 (1163)
.+.+..|||||+++++||.+|+ .+|++++||||+++||+.++..+..+|.+.. .+..+|+|||+...+. .||+
T Consensus 110 ~~~~~~LSgGe~qrv~iaraL~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~ 185 (246)
T cd03237 110 DREVPELSGGELQRVAIAACLS----KDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADR 185 (246)
T ss_pred hCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 3568899999999999999998 6889999999999999999999999998864 3689999999988765 6999
Q ss_pred eeeeeeeCCce
Q 001073 1141 LFRTKFVDGVS 1151 (1163)
Q Consensus 1141 ~~gv~~~~g~S 1151 (1163)
++-+.-..|+.
T Consensus 186 i~~l~~~~~~~ 196 (246)
T cd03237 186 LIVFEGEPSVN 196 (246)
T ss_pred EEEEcCCCeeE
Confidence 87543333443
No 95
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.23 E-value=1.3e-11 Score=137.16 Aligned_cols=84 Identities=24% Similarity=0.319 Sum_probs=71.3
Q ss_pred cccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcchh-h
Q 001073 1060 GGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGMF-N 1136 (1163)
Q Consensus 1060 ~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~~-~ 1136 (1163)
.+..+..+..|||||||+++||++|+ .+|++++|||||++||+..+..+.++|.+..+ +.++|+|||+++.+ .
T Consensus 131 ~~~~~~~~~~LSgGqkQRV~IARAL~----~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~ 206 (343)
T TIGR02314 131 GDKHDSYPSNLSGGQKQRVAIARALA----SNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKR 206 (343)
T ss_pred chhhhCChhhCCHHHHHHHHHHHHHH----hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 33345678999999999999999998 57899999999999999999999999988643 68999999998875 6
Q ss_pred hccceeeeeeeCC
Q 001073 1137 NANVLFRTKFVDG 1149 (1163)
Q Consensus 1137 ~a~~~~gv~~~~g 1149 (1163)
+||+++- |.+|
T Consensus 207 ~~d~v~v--l~~G 217 (343)
T TIGR02314 207 ICDCVAV--ISNG 217 (343)
T ss_pred hCCEEEE--EECC
Confidence 7999853 4454
No 96
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.23 E-value=2.4e-11 Score=121.21 Aligned_cols=82 Identities=24% Similarity=0.300 Sum_probs=70.8
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCC--CCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKP--APLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~--~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~ 1140 (1163)
...+..|||||+++++||.+++ .+ |++++||||+++||+.++..+..+|.... .+..+|++||+...+..||+
T Consensus 82 ~~~~~~LSgGq~qrl~laral~----~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~ 157 (176)
T cd03238 82 GQKLSTLSGGELQRVKLASELF----SEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADW 157 (176)
T ss_pred CCCcCcCCHHHHHHHHHHHHHh----hCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCE
Confidence 4578899999999999999887 46 89999999999999999999999998764 57899999999998889999
Q ss_pred eeeeeeeCC
Q 001073 1141 LFRTKFVDG 1149 (1163)
Q Consensus 1141 ~~gv~~~~g 1149 (1163)
++-..-..|
T Consensus 158 i~~l~~g~~ 166 (176)
T cd03238 158 IIDFGPGSG 166 (176)
T ss_pred EEEECCCCC
Confidence 866443334
No 97
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.22 E-value=3.3e-11 Score=120.54 Aligned_cols=73 Identities=22% Similarity=0.305 Sum_probs=65.9
Q ss_pred cccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeee
Q 001073 1066 SLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1066 ~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
.+..|||||+++++||.+|+ .+||+++||||+++||+.+...+.++|.+. +..+|++||+......||+++-+
T Consensus 88 ~~~~LS~G~~~rv~laral~----~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l 160 (166)
T cd03223 88 WDDVLSGGEQQRLAFARLLL----HKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDL 160 (166)
T ss_pred CCCCCCHHHHHHHHHHHHHH----cCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEE
Confidence 46789999999999999997 688999999999999999999999999876 47899999999888899998643
No 98
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.9e-11 Score=137.58 Aligned_cols=74 Identities=30% Similarity=0.330 Sum_probs=69.5
Q ss_pred cccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceee
Q 001073 1066 SLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFR 1143 (1163)
Q Consensus 1066 ~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~g 1143 (1163)
.-..|||||+||+++|++|. .|+|+++||||||+||..++..|.+.|.+++++.++|+||||+..+..||+++-
T Consensus 453 ~G~~LSgGQ~QRlaLARAll----~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~v 526 (559)
T COG4988 453 GGAGLSGGQAQRLALARALL----SPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVV 526 (559)
T ss_pred CCCCCCHHHHHHHHHHHHhc----CCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEE
Confidence 45679999999999999985 789999999999999999999999999999999999999999999999999975
No 99
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.22 E-value=2.1e-11 Score=128.05 Aligned_cols=80 Identities=20% Similarity=0.241 Sum_probs=69.8
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~~ 1142 (1163)
...+..|||||+++++||++|+ .+|++++|||||++||+.++..+.++|.+...+.++|+|||+...+ ..||+++
T Consensus 125 ~~~~~~LS~G~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~ 200 (211)
T cd03264 125 KKKIGSLSGGMRRRVGIAQALV----GDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVA 200 (211)
T ss_pred hCchhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEE
Confidence 3567899999999999999998 6889999999999999999999999998876668999999998875 5799885
Q ss_pred eeeeeCC
Q 001073 1143 RTKFVDG 1149 (1163)
Q Consensus 1143 gv~~~~g 1149 (1163)
- |.+|
T Consensus 201 ~--l~~g 205 (211)
T cd03264 201 V--LNKG 205 (211)
T ss_pred E--EECC
Confidence 4 4455
No 100
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.22 E-value=2.1e-11 Score=129.01 Aligned_cols=76 Identities=22% Similarity=0.228 Sum_probs=66.6
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~-~~~a~~ 1140 (1163)
.+.+..||||||++++||++|+ .+|+++||||||++||+.++..+.++|.+.. .+..+|+|||++.. ...||+
T Consensus 126 ~~~~~~LSgG~~qrl~la~al~----~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~ 201 (220)
T cd03293 126 NAYPHQLSGGMRQRVALARALA----VDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADR 201 (220)
T ss_pred hCCcccCCHHHHHHHHHHHHHH----cCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCE
Confidence 3567899999999999999998 5889999999999999999999999998763 36899999999874 577998
Q ss_pred eee
Q 001073 1141 LFR 1143 (1163)
Q Consensus 1141 ~~g 1143 (1163)
++-
T Consensus 202 i~~ 204 (220)
T cd03293 202 VVV 204 (220)
T ss_pred EEE
Confidence 864
No 101
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.21 E-value=2.2e-11 Score=128.38 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=67.0
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhh-hccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFN-NANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~-~a~~~ 1141 (1163)
.+.+..|||||+++++||++|+ .+|+++||||||++||+.++..+.++|.+.. .+.++|++||++..+. .||++
T Consensus 132 ~~~~~~LS~G~~qrl~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i 207 (214)
T TIGR02673 132 DAFPEQLSGGEQQRVAIARAIV----NSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRV 207 (214)
T ss_pred hCChhhCCHHHHHHHHHHHHHh----CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEE
Confidence 3567899999999999999998 6889999999999999999999999998764 4789999999987654 69988
Q ss_pred eee
Q 001073 1142 FRT 1144 (1163)
Q Consensus 1142 ~gv 1144 (1163)
+-+
T Consensus 208 ~~l 210 (214)
T TIGR02673 208 IIL 210 (214)
T ss_pred EEe
Confidence 653
No 102
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.20 E-value=3.5e-11 Score=127.90 Aligned_cols=77 Identities=23% Similarity=0.343 Sum_probs=69.0
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFR 1143 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~g 1143 (1163)
...+..|||||+++++||++|+ .+|+++|||||+++||+..+..+.++|.+...+.++|+|||+++.+..||+++-
T Consensus 145 ~~~~~~LSgG~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~ 220 (226)
T cd03248 145 GEKGSQLSGGQKQRVAIARALI----RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILV 220 (226)
T ss_pred hcCCCcCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEE
Confidence 3457899999999999999997 688999999999999999999999999887667899999999998888998865
Q ss_pred e
Q 001073 1144 T 1144 (1163)
Q Consensus 1144 v 1144 (1163)
+
T Consensus 221 l 221 (226)
T cd03248 221 L 221 (226)
T ss_pred e
Confidence 3
No 103
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.20 E-value=2.5e-11 Score=129.78 Aligned_cols=81 Identities=28% Similarity=0.271 Sum_probs=69.0
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~-~~~a~~ 1140 (1163)
.+.+..||||||++++||.+|+ .+||++||||||++||+.++..+.++|.+.. .+..+|+|||+.+. ...||+
T Consensus 131 ~~~~~~LSgG~~qrv~ia~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~ 206 (235)
T cd03261 131 DLYPAELSGGMKKRVALARALA----LDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADR 206 (235)
T ss_pred cCChhhCCHHHHHHHHHHHHHh----cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCE
Confidence 4567899999999999999998 6889999999999999999999999998864 36899999999875 456998
Q ss_pred eeeeeeeCCc
Q 001073 1141 LFRTKFVDGV 1150 (1163)
Q Consensus 1141 ~~gv~~~~g~ 1150 (1163)
++-+ .+|.
T Consensus 207 v~~l--~~G~ 214 (235)
T cd03261 207 IAVL--YDGK 214 (235)
T ss_pred EEEE--ECCe
Confidence 8653 4553
No 104
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.20 E-value=3.5e-11 Score=127.38 Aligned_cols=78 Identities=22% Similarity=0.433 Sum_probs=69.1
Q ss_pred cccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeee
Q 001073 1066 SLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTK 1145 (1163)
Q Consensus 1066 ~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~ 1145 (1163)
.+..|||||+++++||++|+ .+|+++||||||++||+.++..+.++|.+...+.++|++||+.....+||+++-
T Consensus 137 ~~~~LSgG~~qrl~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~-- 210 (220)
T cd03245 137 RGRGLSGGQRQAVALARALL----NDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIV-- 210 (220)
T ss_pred CCccCCHHHHHHHHHHHHHh----cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEE--
Confidence 46799999999999999998 588999999999999999999999999987656899999999988889998854
Q ss_pred eeCC
Q 001073 1146 FVDG 1149 (1163)
Q Consensus 1146 ~~~g 1149 (1163)
+.+|
T Consensus 211 l~~g 214 (220)
T cd03245 211 MDSG 214 (220)
T ss_pred EeCC
Confidence 3455
No 105
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=3.7e-11 Score=128.20 Aligned_cols=81 Identities=25% Similarity=0.340 Sum_probs=69.6
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchhhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMFNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~~~a~~~ 1141 (1163)
...+..||||||++++||++|+ .+|+++||||||++||+.++..+.++|.+.. .+.++|+|||+.+.+..+|++
T Consensus 140 ~~~~~~LSgG~~qrl~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~ 215 (233)
T PRK11629 140 NHRPSELSGGERQRVAIARALV----NNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQ 215 (233)
T ss_pred hCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEE
Confidence 3457899999999999999998 5889999999999999999999999998863 478999999999888777765
Q ss_pred eeeeeeCCc
Q 001073 1142 FRTKFVDGV 1150 (1163)
Q Consensus 1142 ~gv~~~~g~ 1150 (1163)
+ .+.+|.
T Consensus 216 ~--~l~~G~ 222 (233)
T PRK11629 216 L--EMRDGR 222 (233)
T ss_pred E--EEECCE
Confidence 3 566764
No 106
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.20 E-value=3.1e-11 Score=129.06 Aligned_cols=80 Identities=19% Similarity=0.245 Sum_probs=70.2
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchhhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMFNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~~~a~~~ 1141 (1163)
...+..|||||+++++||++|+ .+|+++|||||++|||+.++..+.++|.+.. .+.++|++||+...+..||++
T Consensus 127 ~~~~~~LS~G~~qrl~laral~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i 202 (236)
T TIGR03864 127 DDKVRELNGGHRRRVEIARALL----HRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRL 202 (236)
T ss_pred cCChhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEE
Confidence 4567899999999999999998 6889999999999999999999999998764 368999999999988889998
Q ss_pred eeeeeeCC
Q 001073 1142 FRTKFVDG 1149 (1163)
Q Consensus 1142 ~gv~~~~g 1149 (1163)
+-+ .+|
T Consensus 203 ~~l--~~G 208 (236)
T TIGR03864 203 VVL--HRG 208 (236)
T ss_pred EEE--eCC
Confidence 664 455
No 107
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.20 E-value=2.1e-11 Score=128.03 Aligned_cols=75 Identities=28% Similarity=0.347 Sum_probs=67.2
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~-~~~a~~ 1140 (1163)
...+++||||+|||+.||.++| ..|+++|.||||.+||......|.++|+++. .+..+|+|||+..+ .+.||+
T Consensus 148 ~~YPhelSGGMrQRV~IAmala----~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDr 223 (316)
T COG0444 148 KSYPHELSGGMRQRVMIAMALA----LNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADR 223 (316)
T ss_pred hhCCcccCCcHHHHHHHHHHHh----CCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcce
Confidence 4679999999999999999998 4779999999999999999999999998865 47899999999985 677998
Q ss_pred ee
Q 001073 1141 LF 1142 (1163)
Q Consensus 1141 ~~ 1142 (1163)
++
T Consensus 224 i~ 225 (316)
T COG0444 224 VA 225 (316)
T ss_pred EE
Confidence 73
No 108
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.20 E-value=2.4e-11 Score=127.34 Aligned_cols=80 Identities=21% Similarity=0.212 Sum_probs=69.1
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
.+.+..||||||++++||++|+ .+||+++|||||++||+..+..+..+|.+.. .+.++|++||++..+ ..||++
T Consensus 121 ~~~~~~LS~G~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v 196 (208)
T cd03268 121 KKKVKGFSLGMKQRLGIALALL----GNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRI 196 (208)
T ss_pred hhhHhhCCHHHHHHHHHHHHHh----cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEE
Confidence 4568899999999999999998 6889999999999999999999999998764 468999999999866 579988
Q ss_pred eeeeeeCC
Q 001073 1142 FRTKFVDG 1149 (1163)
Q Consensus 1142 ~gv~~~~g 1149 (1163)
+-+ .+|
T Consensus 197 ~~l--~~g 202 (208)
T cd03268 197 GII--NKG 202 (208)
T ss_pred EEE--ECC
Confidence 654 455
No 109
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.20 E-value=8.7e-05 Score=94.92 Aligned_cols=46 Identities=15% Similarity=0.375 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 242 AEKIRDSAVGEVDRIKAKIAEIDCNTERTRLEIQEMEKQVSNLTAE 287 (1163)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1163)
+...++.+...+..+...+......++.+..++..++..+.....+
T Consensus 842 ~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~ 887 (1822)
T KOG4674|consen 842 AQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQ 887 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444455555555555555555555555555555555555444433
No 110
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.19 E-value=2.3e-11 Score=146.08 Aligned_cols=74 Identities=26% Similarity=0.323 Sum_probs=69.4
Q ss_pred cccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceee
Q 001073 1066 SLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFR 1143 (1163)
Q Consensus 1066 ~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~g 1143 (1163)
.-..|||||||+++||++|. .+||+++|||||++||+.+++.+.+.|.+...+.++|+||||+.++.+||+++=
T Consensus 606 ~G~~LSGGQrQrlalARaLl----~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiV 679 (709)
T COG2274 606 GGANLSGGQRQRLALARALL----SKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIV 679 (709)
T ss_pred CCCCCCHHHHHHHHHHHHhc----cCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEE
Confidence 45789999999999999985 788999999999999999999999999999899999999999999999999963
No 111
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.19 E-value=3.3e-11 Score=126.26 Aligned_cols=75 Identities=25% Similarity=0.371 Sum_probs=66.9
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~~~ 1142 (1163)
.+.+..|||||+++++||++|+ .+|++++||||+++||+..+..+.++|.+.. .+..+|++||++.....||+++
T Consensus 129 ~~~~~~lS~G~~qr~~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~ 204 (206)
T TIGR03608 129 KQKIYELSGGEQQRVALARAIL----KDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVI 204 (206)
T ss_pred cCChhhCCHHHHHHHHHHHHHH----cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEE
Confidence 3457899999999999999998 6889999999999999999999999998764 4688999999998888898875
No 112
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.19 E-value=2.2e-11 Score=120.59 Aligned_cols=87 Identities=23% Similarity=0.190 Sum_probs=75.3
Q ss_pred hhhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhh--CCCCeEEEEEeCcc
Q 001073 1056 CVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH--FPHSQFIVVSLKEG 1133 (1163)
Q Consensus 1056 ~~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~--~~~~q~i~it~~~~ 1133 (1163)
+|+...+...+.+.|||||+|||+||++|+ ..|.+++-|||.|+|||.+...++++|++. ..+.++|+..|..+
T Consensus 134 rvgi~~~A~qra~~LSGGQQQRVaIARaL~----Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd 209 (258)
T COG3638 134 RVGILDKAYQRASTLSGGQQQRVAIARALV----QQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD 209 (258)
T ss_pred HcCcHHHHHHHhccCCcchhHHHHHHHHHh----cCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH
Confidence 444555556779999999999999999997 688999999999999999999999999875 35789999999988
Q ss_pred h-hhhccceeeeee
Q 001073 1134 M-FNNANVLFRTKF 1146 (1163)
Q Consensus 1134 ~-~~~a~~~~gv~~ 1146 (1163)
+ ..+||++||+.-
T Consensus 210 lA~~Y~~Riigl~~ 223 (258)
T COG3638 210 LAKKYADRIIGLKA 223 (258)
T ss_pred HHHHHHhhheEecC
Confidence 7 788999999653
No 113
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.19 E-value=3.4e-11 Score=128.20 Aligned_cols=80 Identities=20% Similarity=0.300 Sum_probs=69.7
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-C-CCeEEEEEeCcchhhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-P-HSQFIVVSLKEGMFNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~-~~q~i~it~~~~~~~~a~~~ 1141 (1163)
...+..|||||+++++||++|+ .+|++++||||++|||+.++..+.++|.+.. . +..+|+|||+...+..||++
T Consensus 141 ~~~~~~LS~Ge~qrl~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i 216 (228)
T PRK10584 141 DHLPAQLSGGEQQRVALARAFN----GRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRR 216 (228)
T ss_pred hCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEE
Confidence 3567899999999999999998 6889999999999999999999999998763 3 68999999999888889987
Q ss_pred eeeeeeCC
Q 001073 1142 FRTKFVDG 1149 (1163)
Q Consensus 1142 ~gv~~~~g 1149 (1163)
+- +.+|
T Consensus 217 ~~--l~~g 222 (228)
T PRK10584 217 LR--LVNG 222 (228)
T ss_pred EE--EECC
Confidence 54 4566
No 114
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.19 E-value=3.6e-11 Score=126.82 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=66.8
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhh-hcccee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFN-NANVLF 1142 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~-~a~~~~ 1142 (1163)
..+..|||||+++++||++|+ .+|++++|||||++||+..+..+.++|.+.. .+..+|++||+...+. .||+++
T Consensus 132 ~~~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~ 207 (214)
T cd03292 132 ALPAELSGGEQQRVAIARAIV----NSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVI 207 (214)
T ss_pred CChhhcCHHHHHHHHHHHHHH----cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE
Confidence 457899999999999999998 6889999999999999999999999998763 4788999999988765 689886
Q ss_pred ee
Q 001073 1143 RT 1144 (1163)
Q Consensus 1143 gv 1144 (1163)
-+
T Consensus 208 ~l 209 (214)
T cd03292 208 AL 209 (214)
T ss_pred EE
Confidence 53
No 115
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.19 E-value=3.4e-11 Score=129.57 Aligned_cols=81 Identities=25% Similarity=0.276 Sum_probs=69.7
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchhh-hccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMFN-NANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~~-~a~~ 1140 (1163)
...+..||||||++++||.+|+ .+|+++|||||+++||+.++..+.++|.+.. .+.++|++||+...+. +||+
T Consensus 139 ~~~~~~LS~G~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~ 214 (241)
T cd03256 139 YQRADQLSGGQQQRVAIARALM----QQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADR 214 (241)
T ss_pred CCCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 4568899999999999999998 5889999999999999999999999998764 3689999999988766 7998
Q ss_pred eeeeeeeCCc
Q 001073 1141 LFRTKFVDGV 1150 (1163)
Q Consensus 1141 ~~gv~~~~g~ 1150 (1163)
++-+ .+|.
T Consensus 215 v~~l--~~G~ 222 (241)
T cd03256 215 IVGL--KDGR 222 (241)
T ss_pred EEEE--ECCE
Confidence 8653 4553
No 116
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.18 E-value=4.9e-11 Score=127.81 Aligned_cols=80 Identities=25% Similarity=0.364 Sum_probs=70.4
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFR 1143 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~g 1143 (1163)
..++..||||||++++||++|+ .+|++++||||+++||+.++..+.++|.....+.++|++||++..+..||+++-
T Consensus 133 ~~~~~~LSgG~~qrv~laral~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~ 208 (237)
T cd03252 133 GEQGAGLSGGQRQRIAIARALI----HNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIV 208 (237)
T ss_pred hcCCCcCCHHHHHHHHHHHHHh----hCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEE
Confidence 3568899999999999999998 578999999999999999999999999887667899999999998888998754
Q ss_pred eeeeCC
Q 001073 1144 TKFVDG 1149 (1163)
Q Consensus 1144 v~~~~g 1149 (1163)
+.+|
T Consensus 209 --l~~G 212 (237)
T cd03252 209 --MEKG 212 (237)
T ss_pred --EECC
Confidence 3455
No 117
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.18 E-value=3.5e-11 Score=127.80 Aligned_cols=77 Identities=18% Similarity=0.221 Sum_probs=67.2
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~-~~~a~~ 1140 (1163)
...+..||||||++++||++|+ .+|+++||||||+|||+.++..+.++|.+.. .+..+|+|||++.. ..+||+
T Consensus 109 ~~~~~~LSgG~~qrv~la~al~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 184 (230)
T TIGR01184 109 DKRPGQLSGGMKQRVAIARALS----IRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDR 184 (230)
T ss_pred cCChhhCCHHHHHHHHHHHHHH----cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 3567899999999999999998 5889999999999999999999999998764 36789999999875 567998
Q ss_pred eeee
Q 001073 1141 LFRT 1144 (1163)
Q Consensus 1141 ~~gv 1144 (1163)
++-+
T Consensus 185 v~~l 188 (230)
T TIGR01184 185 VVML 188 (230)
T ss_pred EEEE
Confidence 8654
No 118
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.18 E-value=4.1e-11 Score=128.47 Aligned_cols=80 Identities=24% Similarity=0.284 Sum_probs=69.2
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
...+..|||||+++++||++|+ .+|+++||||||++||+.++..+.++|.+.. .+..+|++||+...+ .+||++
T Consensus 138 ~~~~~~LSgG~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i 213 (236)
T cd03219 138 DRPAGELSYGQQRRLEIARALA----TDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRV 213 (236)
T ss_pred hCChhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEE
Confidence 4568899999999999999997 5889999999999999999999999998764 567899999998875 569988
Q ss_pred eeeeeeCC
Q 001073 1142 FRTKFVDG 1149 (1163)
Q Consensus 1142 ~gv~~~~g 1149 (1163)
+-+ .+|
T Consensus 214 ~~l--~~G 219 (236)
T cd03219 214 TVL--DQG 219 (236)
T ss_pred EEE--eCC
Confidence 653 455
No 119
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.18 E-value=3.8e-11 Score=127.13 Aligned_cols=80 Identities=21% Similarity=0.262 Sum_probs=69.6
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~~ 1142 (1163)
...+..|||||+++++||++|+ .+|++++||||+++||+.+...+.++|.....+.++|++||++..+ .+||+++
T Consensus 128 ~~~~~~LS~G~~qrv~la~al~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~ 203 (220)
T cd03263 128 NKRARTLSGGMKRKLSLAIALI----GGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIA 203 (220)
T ss_pred hChhhhCCHHHHHHHHHHHHHh----cCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEE
Confidence 3567899999999999999997 6889999999999999999999999998876678999999999876 5799885
Q ss_pred eeeeeCC
Q 001073 1143 RTKFVDG 1149 (1163)
Q Consensus 1143 gv~~~~g 1149 (1163)
- +.+|
T Consensus 204 ~--l~~g 208 (220)
T cd03263 204 I--MSDG 208 (220)
T ss_pred E--EECC
Confidence 4 4455
No 120
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.18 E-value=4.3e-11 Score=120.97 Aligned_cols=70 Identities=26% Similarity=0.374 Sum_probs=63.8
Q ss_pred cChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhccceee
Q 001073 1070 LSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANVLFR 1143 (1163)
Q Consensus 1070 lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~~~g 1143 (1163)
|||||+++++||.+|+ .+|+++|||||+++||+..+..+.++|.... .+.++|++||+...+..||+++-
T Consensus 97 LS~G~~qrv~la~al~----~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~ 167 (173)
T cd03246 97 LSGGQRQRLGLARALY----GNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILV 167 (173)
T ss_pred cCHHHHHHHHHHHHHh----cCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEE
Confidence 9999999999999998 6889999999999999999999999998764 47899999999988889998854
No 121
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=99.18 E-value=6.1e-12 Score=131.89 Aligned_cols=47 Identities=40% Similarity=0.714 Sum_probs=40.8
Q ss_pred EEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCc
Q 001073 5 EICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITN 53 (1163)
Q Consensus 5 ~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~ 53 (1163)
+|.|.||++|.+.+ + +|+||+|+|+||||||||||++||+|+||+..
T Consensus 1 ~i~i~nf~~~~~~~-i-~f~~g~~vi~G~Ng~GKStil~ai~~~L~~~~ 47 (202)
T PF13476_consen 1 KIHIKNFRSFKDLE-I-DFSPGLNVIYGPNGSGKSTILEAIRYALGGQS 47 (202)
T ss_dssp EEEEEEETTEEEEE-E-E--SEEEEEEESTTSSHHHHHHHHHHHHHSS-
T ss_pred CEEEEEeCCCcceE-E-EcCCCcEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 68999999998866 4 79999999999999999999999999998765
No 122
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.18 E-value=3.5e-11 Score=146.68 Aligned_cols=77 Identities=25% Similarity=0.365 Sum_probs=71.1
Q ss_pred cccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeeee
Q 001073 1068 SELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKFV 1147 (1163)
Q Consensus 1068 ~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~~ 1147 (1163)
.+||||||||+|||++|. ..|++++|||||++||+..++.+.+.|...+.+.++|+|+||..++..||+++. |.
T Consensus 488 ~qLSGGQKQRIAIARalv----~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v--~~ 561 (1228)
T KOG0055|consen 488 VQLSGGQKQRIAIARALV----RNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAV--ME 561 (1228)
T ss_pred CCCChHHHHHHHHHHHHH----hCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEE--EE
Confidence 359999999999999997 688999999999999999999999999999999999999999999999999976 55
Q ss_pred CCc
Q 001073 1148 DGV 1150 (1163)
Q Consensus 1148 ~g~ 1150 (1163)
+|.
T Consensus 562 ~G~ 564 (1228)
T KOG0055|consen 562 EGK 564 (1228)
T ss_pred CCE
Confidence 664
No 123
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=3.9e-11 Score=129.26 Aligned_cols=78 Identities=24% Similarity=0.286 Sum_probs=67.7
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~-~~~a~~ 1140 (1163)
.+++..|||||+++++||++|+ .+|+++||||||++||+.++..+.++|.... .+.++|+|||++.. ...||+
T Consensus 123 ~~~~~~LSgGq~qrl~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~ 198 (255)
T PRK11248 123 KRYIWQLSGGQRQRVGIARALA----ANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATE 198 (255)
T ss_pred hCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 3567899999999999999997 5889999999999999999999999998763 37899999999876 467998
Q ss_pred eeeee
Q 001073 1141 LFRTK 1145 (1163)
Q Consensus 1141 ~~gv~ 1145 (1163)
++-+.
T Consensus 199 i~~l~ 203 (255)
T PRK11248 199 LVLLS 203 (255)
T ss_pred EEEEe
Confidence 86653
No 124
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.17 E-value=3.6e-11 Score=126.54 Aligned_cols=79 Identities=27% Similarity=0.257 Sum_probs=68.1
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcchh-hhccce
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
.++..||||||++++||.+|+ .+|++++|||||++||+.++..+.++|.+... +..+|++||+...+ ..||++
T Consensus 127 ~~~~~LS~G~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i 202 (214)
T cd03297 127 RYPAQLSGGEKQRVALARALA----AQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRI 202 (214)
T ss_pred cCcccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEE
Confidence 567899999999999999997 68899999999999999999999999987643 67899999998865 579987
Q ss_pred eeeeeeCC
Q 001073 1142 FRTKFVDG 1149 (1163)
Q Consensus 1142 ~gv~~~~g 1149 (1163)
+- +.+|
T Consensus 203 ~~--l~~G 208 (214)
T cd03297 203 VV--MEDG 208 (214)
T ss_pred EE--EECC
Confidence 54 4455
No 125
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.17 E-value=6.9e-11 Score=120.14 Aligned_cols=78 Identities=24% Similarity=0.339 Sum_probs=68.9
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKF 1146 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~ 1146 (1163)
+..|||||+++++||++|+ .+|++++||||+++||+.....+.++|.....+..+|++||+...+..||+++- |
T Consensus 96 ~~~LS~G~~qrv~laral~----~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~--l 169 (178)
T cd03247 96 GRRFSGGERQRLALARILL----QDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILF--L 169 (178)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEE--E
Confidence 6789999999999999998 688999999999999999999999999887667899999999998888998854 3
Q ss_pred eCCc
Q 001073 1147 VDGV 1150 (1163)
Q Consensus 1147 ~~g~ 1150 (1163)
.+|.
T Consensus 170 ~~g~ 173 (178)
T cd03247 170 ENGK 173 (178)
T ss_pred ECCE
Confidence 4443
No 126
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.17 E-value=3.7e-11 Score=128.20 Aligned_cols=80 Identities=29% Similarity=0.333 Sum_probs=69.6
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcchhh-hccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGMFN-NANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~~~-~a~~ 1140 (1163)
..++..|||||+++++||.+|+ .+||+++|||||++||+.++..+.++|.+... +.++|++||++..+. .||+
T Consensus 140 ~~~~~~LS~G~~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 215 (228)
T cd03257 140 NRYPHELSGGQRQRVAIARALA----LNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADR 215 (228)
T ss_pred hCCchhcCHHHHHHHHHHHHHh----cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 3567899999999999999987 68899999999999999999999999988643 789999999998765 7999
Q ss_pred eeeeeeeCC
Q 001073 1141 LFRTKFVDG 1149 (1163)
Q Consensus 1141 ~~gv~~~~g 1149 (1163)
++- +.+|
T Consensus 216 i~~--l~~G 222 (228)
T cd03257 216 VAV--MYAG 222 (228)
T ss_pred EEE--EeCC
Confidence 865 4455
No 127
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.17 E-value=4.2e-11 Score=128.99 Aligned_cols=80 Identities=24% Similarity=0.254 Sum_probs=69.0
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchh-hhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~-~~a~~ 1140 (1163)
.+.+..|||||+++++||.+|+ .+|++++|||||++||+.++..+.++|.+.. .+.++|++||+...+ .+||+
T Consensus 140 ~~~~~~LSgG~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~ 215 (243)
T TIGR02315 140 YQRADQLSGGQQQRVAIARALA----QQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADR 215 (243)
T ss_pred cCCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 4568899999999999999998 6889999999999999999999999998763 367899999998875 67998
Q ss_pred eeeeeeeCC
Q 001073 1141 LFRTKFVDG 1149 (1163)
Q Consensus 1141 ~~gv~~~~g 1149 (1163)
++-+ .+|
T Consensus 216 v~~l--~~G 222 (243)
T TIGR02315 216 IVGL--KAG 222 (243)
T ss_pred EEEE--ECC
Confidence 8654 454
No 128
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.17 E-value=6.8e-11 Score=119.21 Aligned_cols=71 Identities=28% Similarity=0.399 Sum_probs=64.6
Q ss_pred cChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeee
Q 001073 1070 LSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1070 lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
|||||+++++||.+|+ .+|++++||||+++||+..+..+.++|.....+.++|++||++..+..||+++-+
T Consensus 97 LS~G~~~rl~la~al~----~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l 167 (171)
T cd03228 97 LSGGQRQRIAIARALL----RDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVL 167 (171)
T ss_pred hCHHHHHHHHHHHHHh----cCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEE
Confidence 9999999999999987 5889999999999999999999999998876678999999999888889988653
No 129
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.17 E-value=4.1e-11 Score=125.81 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=68.5
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
...+..||||||++++||++|+ .+|++++||||+++||+.++..+.++|.... .+..+|++||+...+ .+||++
T Consensus 123 ~~~~~~LS~G~~qrl~la~al~----~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i 198 (210)
T cd03269 123 NKRVEELSKGNQQKVQFIAAVI----HDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRV 198 (210)
T ss_pred hCcHhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEE
Confidence 3567899999999999999998 5789999999999999999999999998764 468999999998865 679988
Q ss_pred eeeeeeCC
Q 001073 1142 FRTKFVDG 1149 (1163)
Q Consensus 1142 ~gv~~~~g 1149 (1163)
+-+ .+|
T Consensus 199 ~~l--~~g 204 (210)
T cd03269 199 LLL--NKG 204 (210)
T ss_pred EEE--eCC
Confidence 653 454
No 130
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.17 E-value=4.7e-11 Score=125.44 Aligned_cols=80 Identities=26% Similarity=0.332 Sum_probs=68.8
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchh-hhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~-~~a~~ 1140 (1163)
...+..|||||+++++||++|+ .+|+++|||||+++||+.++..+.++|.+.. .+..+|++||+...+ .+||+
T Consensus 123 ~~~~~~LS~G~~qrv~ia~al~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 198 (211)
T cd03298 123 KRLPGELSGGERQRVALARVLV----RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQR 198 (211)
T ss_pred hCCcccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCE
Confidence 4567899999999999999997 6889999999999999999999999998764 368999999998865 66998
Q ss_pred eeeeeeeCC
Q 001073 1141 LFRTKFVDG 1149 (1163)
Q Consensus 1141 ~~gv~~~~g 1149 (1163)
++- +.+|
T Consensus 199 i~~--l~~G 205 (211)
T cd03298 199 VVF--LDNG 205 (211)
T ss_pred EEE--EECC
Confidence 865 3454
No 131
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.17 E-value=4.6e-11 Score=131.57 Aligned_cols=81 Identities=28% Similarity=0.337 Sum_probs=70.3
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcc-hhhhccc
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEG-MFNNANV 1140 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~-~~~~a~~ 1140 (1163)
..+++..||||||++++||.+|+ .+|++++|||||++||+.++..+.++|..+. .+.++|+|||+.. ...+||+
T Consensus 159 ~~~~~~~LSgGqkqrvalA~aL~----~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adr 234 (305)
T PRK13651 159 LQRSPFELSGGQKRRVALAGILA----MEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKR 234 (305)
T ss_pred hhCChhhCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCE
Confidence 45679999999999999999998 5779999999999999999999999998763 4788999999987 4688998
Q ss_pred eeeeeeeCC
Q 001073 1141 LFRTKFVDG 1149 (1163)
Q Consensus 1141 ~~gv~~~~g 1149 (1163)
++- |.+|
T Consensus 235 v~v--l~~G 241 (305)
T PRK13651 235 TIF--FKDG 241 (305)
T ss_pred EEE--EECC
Confidence 854 4566
No 132
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.16 E-value=5e-11 Score=128.05 Aligned_cols=77 Identities=23% Similarity=0.269 Sum_probs=67.2
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~-~~~a~~ 1140 (1163)
.+.+..||||||++++||++|+ .+|+++||||||++||+.++..+.++|.... .+.++|+|||+... ...||+
T Consensus 128 ~~~~~~LSgGqkqrl~laraL~----~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~ 203 (257)
T PRK11247 128 NEWPAALSGGQKQRVALARALI----HRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADR 203 (257)
T ss_pred cCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 4568899999999999999998 5889999999999999999999999998753 36899999999886 467998
Q ss_pred eeee
Q 001073 1141 LFRT 1144 (1163)
Q Consensus 1141 ~~gv 1144 (1163)
++-+
T Consensus 204 i~~l 207 (257)
T PRK11247 204 VLLI 207 (257)
T ss_pred EEEE
Confidence 8654
No 133
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.16 E-value=4.5e-11 Score=111.90 Aligned_cols=79 Identities=22% Similarity=0.279 Sum_probs=68.8
Q ss_pred cchhhhhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEe
Q 001073 1052 GLEVCVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSL 1130 (1163)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~ 1130 (1163)
.+.-.|+...+....|..|||||+||+|||++||+ .|.+++|||||++|||.-+..+...|..++ .+.+++++||
T Consensus 135 ~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLam----eP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTH 210 (256)
T COG4598 135 KYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAM----EPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTH 210 (256)
T ss_pred HHHHHhCchhhhhcCccccCchHHHHHHHHHHHhc----CCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEee
Confidence 44556777777778899999999999999999995 669999999999999999999999998876 5789999999
Q ss_pred Ccch
Q 001073 1131 KEGM 1134 (1163)
Q Consensus 1131 ~~~~ 1134 (1163)
-+.+
T Consensus 211 EM~F 214 (256)
T COG4598 211 EMGF 214 (256)
T ss_pred ehhH
Confidence 7665
No 134
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.16 E-value=6e-11 Score=125.62 Aligned_cols=81 Identities=23% Similarity=0.351 Sum_probs=71.2
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchhhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMFNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~~~a~~~ 1141 (1163)
..++..|||||+++++||++|+ .+|++++||||+++||+.++..+..+|.+.. .+.++|+|||+...+..||++
T Consensus 132 ~~~~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i 207 (225)
T PRK10247 132 TKNIAELSGGEKQRISLIRNLQ----FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKV 207 (225)
T ss_pred cCCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEE
Confidence 3568899999999999999998 6889999999999999999999999998764 368999999999888899999
Q ss_pred eeeeeeC
Q 001073 1142 FRTKFVD 1148 (1163)
Q Consensus 1142 ~gv~~~~ 1148 (1163)
+-+....
T Consensus 208 ~~l~~~~ 214 (225)
T PRK10247 208 ITLQPHA 214 (225)
T ss_pred EEEeccc
Confidence 8775443
No 135
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.16 E-value=6.5e-11 Score=125.97 Aligned_cols=77 Identities=27% Similarity=0.292 Sum_probs=67.1
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcch-hhhccceeeee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGM-FNNANVLFRTK 1145 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~-~~~a~~~~gv~ 1145 (1163)
+..|||||+++++||.+|+ .+||++||||||++||+.++..+.++|.+.....++|++||+... ...||+++-+
T Consensus 139 ~~~LSgG~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l- 213 (227)
T cd03260 139 ALGLSGGQQQRLCLARALA----NEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFL- 213 (227)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEE-
Confidence 5899999999999999987 588999999999999999999999999887545889999999876 4579988653
Q ss_pred eeCC
Q 001073 1146 FVDG 1149 (1163)
Q Consensus 1146 ~~~g 1149 (1163)
.+|
T Consensus 214 -~~G 216 (227)
T cd03260 214 -LNG 216 (227)
T ss_pred -eCC
Confidence 455
No 136
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.16 E-value=6.4e-11 Score=127.41 Aligned_cols=77 Identities=21% Similarity=0.267 Sum_probs=68.5
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~~ 1142 (1163)
...+..|||||+++++||++|+ .+|++++|||||++||+..+..+.++|.+...+.++|++||+...+ .+||+++
T Consensus 138 ~~~~~~LS~Ge~qrv~laral~----~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~ 213 (242)
T TIGR03411 138 DRLAGLLSHGQKQWLEIGMLLM----QDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVT 213 (242)
T ss_pred cCChhhCCHHHHHHHHHHHHHh----cCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE
Confidence 4568899999999999999987 6889999999999999999999999999876678999999998876 5699886
Q ss_pred ee
Q 001073 1143 RT 1144 (1163)
Q Consensus 1143 gv 1144 (1163)
-+
T Consensus 214 ~l 215 (242)
T TIGR03411 214 VL 215 (242)
T ss_pred EE
Confidence 54
No 137
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.16 E-value=5e-11 Score=127.78 Aligned_cols=80 Identities=26% Similarity=0.338 Sum_probs=68.7
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~-~~~a~~ 1140 (1163)
...+..|||||+++++||.+|+ .+|++++||||+++||+.++..+.++|.+... +..+|++||+... ...||+
T Consensus 131 ~~~~~~LS~G~~qrl~la~al~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~ 206 (239)
T cd03296 131 DRYPAQLSGGQRQRVALARALA----VEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADR 206 (239)
T ss_pred hcChhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 4567899999999999999998 57899999999999999999999999987643 6789999999875 567998
Q ss_pred eeeeeeeCC
Q 001073 1141 LFRTKFVDG 1149 (1163)
Q Consensus 1141 ~~gv~~~~g 1149 (1163)
++-+ .+|
T Consensus 207 i~~l--~~G 213 (239)
T cd03296 207 VVVM--NKG 213 (239)
T ss_pred EEEE--ECC
Confidence 8653 455
No 138
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.16 E-value=5.7e-11 Score=128.04 Aligned_cols=80 Identities=28% Similarity=0.309 Sum_probs=69.6
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcch-hhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGM-FNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~-~~~a~~~~ 1142 (1163)
...+..||||||++++||.+|+ .+|+++||||||++||+.++..+.++|....++.++|+|||++.. ...||+++
T Consensus 139 ~~~~~~LSgG~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~ 214 (247)
T TIGR00972 139 HDSALGLSGGQQQRLCIARALA----VEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTA 214 (247)
T ss_pred hCCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEE
Confidence 4568899999999999999998 688999999999999999999999999887656899999999985 56799885
Q ss_pred eeeeeCC
Q 001073 1143 RTKFVDG 1149 (1163)
Q Consensus 1143 gv~~~~g 1149 (1163)
- |.+|
T Consensus 215 ~--l~~G 219 (247)
T TIGR00972 215 F--FYDG 219 (247)
T ss_pred E--EECC
Confidence 4 4455
No 139
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.16 E-value=6.3e-11 Score=130.02 Aligned_cols=77 Identities=30% Similarity=0.294 Sum_probs=68.1
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchh-hhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~-~~a~~ 1140 (1163)
...+..|||||+++++||.+|+ .+|+++||||||+|||+.++..+.++|.++. .+.++|++||+...+ .+||+
T Consensus 139 ~~~~~~LSgGq~qrv~iAraL~----~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dr 214 (287)
T PRK13637 139 DKSPFELSGGQKRRVAIAGVVA----MEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADR 214 (287)
T ss_pred cCCcccCCHHHHHHHHHHHHHH----cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 4568899999999999999998 5789999999999999999999999998864 368999999998765 67999
Q ss_pred eeee
Q 001073 1141 LFRT 1144 (1163)
Q Consensus 1141 ~~gv 1144 (1163)
++-+
T Consensus 215 v~~l 218 (287)
T PRK13637 215 IIVM 218 (287)
T ss_pred EEEE
Confidence 8764
No 140
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.16 E-value=4.8e-11 Score=133.97 Aligned_cols=76 Identities=21% Similarity=0.288 Sum_probs=66.9
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcchh-hhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~~-~~a~~ 1140 (1163)
.+.+..||||||++++||++|+ .+|+++||||||++||+.++..+.++|.+... +..+|++||++..+ .+||+
T Consensus 135 ~~~~~~LSgGq~qRv~lAraL~----~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~ 210 (343)
T PRK11153 135 DRYPAQLSGGQKQRVAIARALA----SNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDR 210 (343)
T ss_pred hCChhhCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 4568899999999999999998 68899999999999999999999999988642 68999999998864 56998
Q ss_pred eee
Q 001073 1141 LFR 1143 (1163)
Q Consensus 1141 ~~g 1143 (1163)
++-
T Consensus 211 v~~ 213 (343)
T PRK11153 211 VAV 213 (343)
T ss_pred EEE
Confidence 865
No 141
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.16 E-value=6e-11 Score=132.57 Aligned_cols=81 Identities=19% Similarity=0.225 Sum_probs=70.2
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcc-hhhhcc
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEG-MFNNAN 1139 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~-~~~~a~ 1139 (1163)
..+.+..|||||+|+++||++|+ .+||+++||||+++||+..+..+.++|.... .+.++|+|||+.. .+..||
T Consensus 123 ~~~~p~~LSGGq~QRV~lARAL~----~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~d 198 (363)
T TIGR01186 123 EHRYPDELSGGMQQRVGLARALA----AEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGD 198 (363)
T ss_pred hhCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 35678899999999999999998 6889999999999999999999999988753 3789999999987 578899
Q ss_pred ceeeeeeeCC
Q 001073 1140 VLFRTKFVDG 1149 (1163)
Q Consensus 1140 ~~~gv~~~~g 1149 (1163)
+++- |.+|
T Consensus 199 rI~v--l~~G 206 (363)
T TIGR01186 199 RIVI--MKAG 206 (363)
T ss_pred EEEE--EeCC
Confidence 9853 5566
No 142
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.16 E-value=6e-11 Score=129.75 Aligned_cols=80 Identities=21% Similarity=0.255 Sum_probs=69.9
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcchhhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGMFNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~~~~a~~~ 1141 (1163)
.+.+..|||||+++++||.+|+ .+|++++|||||+|||+.++..+..+|.+..+ +.++|++||+...+..||++
T Consensus 135 ~~~~~~LSgGq~qrv~lAral~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri 210 (279)
T PRK13650 135 EREPARLSGGQKQRVAIAGAVA----MRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRV 210 (279)
T ss_pred hCCcccCCHHHHHHHHHHHHHH----cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEE
Confidence 4568899999999999999998 57899999999999999999999999987643 78999999999887889988
Q ss_pred eeeeeeCC
Q 001073 1142 FRTKFVDG 1149 (1163)
Q Consensus 1142 ~gv~~~~g 1149 (1163)
+-+ .+|
T Consensus 211 ~~l--~~G 216 (279)
T PRK13650 211 LVM--KNG 216 (279)
T ss_pred EEE--ECC
Confidence 543 455
No 143
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.16 E-value=6.4e-11 Score=124.79 Aligned_cols=77 Identities=23% Similarity=0.283 Sum_probs=67.3
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
.+.+..|||||+++++||++|+ .+|+++|||||++|||+.++..+..+|.+.. .+.++|++||+...+ ..||++
T Consensus 130 ~~~~~~LS~G~~qrv~la~al~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i 205 (213)
T cd03262 130 DAYPAQLSGGQQQRVAIARALA----MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRV 205 (213)
T ss_pred hhCccccCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 3567899999999999999998 5789999999999999999999999998764 467899999998876 579988
Q ss_pred eee
Q 001073 1142 FRT 1144 (1163)
Q Consensus 1142 ~gv 1144 (1163)
+-+
T Consensus 206 ~~l 208 (213)
T cd03262 206 IFM 208 (213)
T ss_pred EEE
Confidence 653
No 144
>PRK10908 cell division protein FtsE; Provisional
Probab=99.15 E-value=7.9e-11 Score=124.75 Aligned_cols=77 Identities=16% Similarity=0.255 Sum_probs=67.0
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
.+.+..|||||+++++||.+|+ .+|++++|||||++||+.++..+..+|.... .+..+|+|||++..+ ..||++
T Consensus 132 ~~~~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i 207 (222)
T PRK10908 132 KNFPIQLSGGEQQRVGIARAVV----NKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRM 207 (222)
T ss_pred hCCchhCCHHHHHHHHHHHHHH----cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE
Confidence 3567899999999999999997 6889999999999999999999999998763 468999999998865 458988
Q ss_pred eee
Q 001073 1142 FRT 1144 (1163)
Q Consensus 1142 ~gv 1144 (1163)
+-+
T Consensus 208 ~~l 210 (222)
T PRK10908 208 LTL 210 (222)
T ss_pred EEE
Confidence 654
No 145
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.15 E-value=5.8e-11 Score=125.55 Aligned_cols=80 Identities=18% Similarity=0.231 Sum_probs=69.1
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcch-hhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGM-FNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~-~~~a~~~ 1141 (1163)
.+++..|||||+++++||++|+ .+|++++||||+++||+.++..+.++|.+.. .+.++|+|||+... ..+||++
T Consensus 131 ~~~~~~LS~G~~qrv~laral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i 206 (218)
T cd03266 131 DRRVGGFSTGMRQKVAIARALV----HDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRV 206 (218)
T ss_pred hhhhhhcCHHHHHHHHHHHHHh----cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEE
Confidence 4578899999999999999998 6889999999999999999999999998764 47899999999875 5679988
Q ss_pred eeeeeeCC
Q 001073 1142 FRTKFVDG 1149 (1163)
Q Consensus 1142 ~gv~~~~g 1149 (1163)
+- |.+|
T Consensus 207 ~~--l~~G 212 (218)
T cd03266 207 VV--LHRG 212 (218)
T ss_pred EE--EECC
Confidence 65 3455
No 146
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.15 E-value=1e-10 Score=123.45 Aligned_cols=78 Identities=22% Similarity=0.278 Sum_probs=68.0
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCC-CCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKP-APLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~-~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~~ 1141 (1163)
...+..|||||+++++||.+|+. .| |+++|||||+++||+..+..+.++|.... .+..+|+|||++..+..||++
T Consensus 132 ~~~~~~LSgG~~qrv~laral~~---~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i 208 (226)
T cd03270 132 SRSAPTLSGGEAQRIRLATQIGS---GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHV 208 (226)
T ss_pred cCccCcCCHHHHHHHHHHHHHHh---CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEE
Confidence 45788999999999999999984 34 36999999999999999999999998753 467899999999988899998
Q ss_pred eee
Q 001073 1142 FRT 1144 (1163)
Q Consensus 1142 ~gv 1144 (1163)
+-+
T Consensus 209 ~~l 211 (226)
T cd03270 209 IDI 211 (226)
T ss_pred EEe
Confidence 665
No 147
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.15 E-value=6.5e-11 Score=129.09 Aligned_cols=78 Identities=21% Similarity=0.202 Sum_probs=68.7
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccc
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~ 1140 (1163)
..+.+..|||||+++++||.+|+ .+|+++||||||++||+.++..+.++|.... .+.++|++||+.+.+ .+||+
T Consensus 132 ~~~~~~~LSgG~~qrv~laraL~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~ 207 (274)
T PRK13647 132 RDKPPYHLSYGQKKRVAIAGVLA----MDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQ 207 (274)
T ss_pred hcCChhhCCHHHHHHHHHHHHHH----cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE
Confidence 34578899999999999999998 6889999999999999999999999998764 478999999999875 78999
Q ss_pred eeee
Q 001073 1141 LFRT 1144 (1163)
Q Consensus 1141 ~~gv 1144 (1163)
++-+
T Consensus 208 i~~l 211 (274)
T PRK13647 208 VIVL 211 (274)
T ss_pred EEEE
Confidence 8653
No 148
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.15 E-value=6.3e-11 Score=120.37 Aligned_cols=70 Identities=26% Similarity=0.297 Sum_probs=62.9
Q ss_pred cChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcchhh-hccceee
Q 001073 1070 LSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGMFN-NANVLFR 1143 (1163)
Q Consensus 1070 lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~~~-~a~~~~g 1143 (1163)
|||||+++++||++|+ .+|+++|||||+++||+.++..+.++|....+ ++++|++||++..+. .||+++-
T Consensus 101 lS~G~~qr~~la~al~----~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 173 (178)
T cd03229 101 LSGGQQQRVALARALA----MDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVV 173 (178)
T ss_pred CCHHHHHHHHHHHHHH----CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 9999999999999998 68899999999999999999999999987644 589999999988766 7998765
No 149
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.15 E-value=6.7e-11 Score=126.42 Aligned_cols=81 Identities=23% Similarity=0.294 Sum_probs=69.4
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcc-hhhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEG-MFNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~-~~~~a~~~ 1141 (1163)
...+..|||||+++++||++|+ .+|+++||||||++||+.++..+.++|.+.. .+..+|++||+++ +...||++
T Consensus 128 ~~~~~~LS~G~~qrl~la~al~----~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i 203 (232)
T cd03218 128 KSKASSLSGGERRRVEIARALA----TNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRA 203 (232)
T ss_pred hCChhhCCHHHHHHHHHHHHHh----cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE
Confidence 4568899999999999999998 5889999999999999999999999998764 4678999999985 67779988
Q ss_pred eeeeeeCCc
Q 001073 1142 FRTKFVDGV 1150 (1163)
Q Consensus 1142 ~gv~~~~g~ 1150 (1163)
+-+ .+|.
T Consensus 204 ~~l--~~G~ 210 (232)
T cd03218 204 YII--YEGK 210 (232)
T ss_pred EEE--ECCe
Confidence 653 4553
No 150
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.15 E-value=9.4e-11 Score=125.01 Aligned_cols=80 Identities=23% Similarity=0.366 Sum_probs=70.4
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
..+..|||||+++++||.+|+ .+|++++||||++|||+..+..+.++|.....+.++|++||+...+..||+++-
T Consensus 135 ~~~~~LS~G~~~rv~la~al~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~- 209 (229)
T cd03254 135 ENGGNLSQGERQLLAIARAML----RDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILV- 209 (229)
T ss_pred cCCCcCCHHHHHHHHHHHHHh----cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEE-
Confidence 457899999999999999997 688999999999999999999999999887667899999999988888998855
Q ss_pred eeeCCc
Q 001073 1145 KFVDGV 1150 (1163)
Q Consensus 1145 ~~~~g~ 1150 (1163)
|.+|.
T Consensus 210 -l~~g~ 214 (229)
T cd03254 210 -LDDGK 214 (229)
T ss_pred -EeCCe
Confidence 34554
No 151
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.15 E-value=6.4e-11 Score=124.70 Aligned_cols=80 Identities=23% Similarity=0.274 Sum_probs=68.3
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~-~~~a~~ 1140 (1163)
...+..|||||+++++||++|+ .+|++++||||++|||+.++..+.++|.+.. .+..+|+|||+... ...||+
T Consensus 125 ~~~~~~LS~G~~qr~~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~ 200 (213)
T cd03301 125 DRKPKQLSGGQRQRVALGRAIV----REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADR 200 (213)
T ss_pred hCChhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 4567899999999999999997 6889999999999999999999999998764 36899999999876 456998
Q ss_pred eeeeeeeCC
Q 001073 1141 LFRTKFVDG 1149 (1163)
Q Consensus 1141 ~~gv~~~~g 1149 (1163)
++-+ .+|
T Consensus 201 i~~l--~~g 207 (213)
T cd03301 201 IAVM--NDG 207 (213)
T ss_pred EEEE--ECC
Confidence 7653 454
No 152
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.15 E-value=6.3e-11 Score=131.19 Aligned_cols=76 Identities=17% Similarity=0.184 Sum_probs=66.8
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
.+.+..||||||++++||.+|+ .+|+++||||||+|||+.++..+.++|.+.. .+.++|++||+...+ ..||++
T Consensus 119 ~~~~~~LSgG~~qrv~la~al~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v 194 (302)
T TIGR01188 119 DRPVGTYSGGMRRRLDIAASLI----HQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRI 194 (302)
T ss_pred CCchhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE
Confidence 4568899999999999999987 6889999999999999999999999998864 468999999998765 569987
Q ss_pred ee
Q 001073 1142 FR 1143 (1163)
Q Consensus 1142 ~g 1143 (1163)
+-
T Consensus 195 ~~ 196 (302)
T TIGR01188 195 AI 196 (302)
T ss_pred EE
Confidence 53
No 153
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.15 E-value=7.6e-11 Score=130.61 Aligned_cols=76 Identities=25% Similarity=0.288 Sum_probs=67.3
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
.+.+..||||||++++||++|+ .+|+++||||||+|||+..+..+.++|.... .+.++|+|||+.+.+ ..||++
T Consensus 171 ~~~~~~LSgGqkqRvaiAraL~----~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri 246 (320)
T PRK13631 171 ERSPFGLSGGQKRRVAIAGILA----IQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEV 246 (320)
T ss_pred cCCcccCCHHHHHHHHHHHHHH----cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEE
Confidence 4568899999999999999998 5889999999999999999999999998753 478999999999854 789988
Q ss_pred ee
Q 001073 1142 FR 1143 (1163)
Q Consensus 1142 ~g 1143 (1163)
+-
T Consensus 247 ~v 248 (320)
T PRK13631 247 IV 248 (320)
T ss_pred EE
Confidence 54
No 154
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.15 E-value=6.5e-11 Score=126.52 Aligned_cols=81 Identities=20% Similarity=0.255 Sum_probs=69.4
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchh-hhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~-~~a~~ 1140 (1163)
.+.+..|||||+++++||.+|+ .+|+++|||||+++||+.++..+.++|.+.. .++.+|++||+...+ .+||+
T Consensus 135 ~~~~~~LS~G~~qrv~la~al~----~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~ 210 (233)
T cd03258 135 DAYPAQLSGGQKQRVGIARALA----NNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDR 210 (233)
T ss_pred hcChhhCCHHHHHHHHHHHHHh----cCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 3567899999999999999987 6889999999999999999999999998764 368999999999875 56998
Q ss_pred eeeeeeeCCc
Q 001073 1141 LFRTKFVDGV 1150 (1163)
Q Consensus 1141 ~~gv~~~~g~ 1150 (1163)
++-+ .+|.
T Consensus 211 i~~l--~~G~ 218 (233)
T cd03258 211 VAVM--EKGE 218 (233)
T ss_pred EEEE--ECCE
Confidence 8653 4553
No 155
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.15 E-value=7e-11 Score=128.59 Aligned_cols=80 Identities=19% Similarity=0.218 Sum_probs=68.7
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~-~~~a~~ 1140 (1163)
...+..||||||++++||.+|+ .+|+++|||||++|||+..+..+.++|.+.. .+..+|++||+... ...||+
T Consensus 155 ~~~~~~LS~Gq~qrv~lAral~----~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~ 230 (269)
T cd03294 155 HKYPDELSGGMQQRVGLARALA----VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDR 230 (269)
T ss_pred hCCcccCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 4567899999999999999998 6889999999999999999999999998764 36899999999875 467998
Q ss_pred eeeeeeeCC
Q 001073 1141 LFRTKFVDG 1149 (1163)
Q Consensus 1141 ~~gv~~~~g 1149 (1163)
++-+ .+|
T Consensus 231 v~~l--~~G 237 (269)
T cd03294 231 IAIM--KDG 237 (269)
T ss_pred EEEE--ECC
Confidence 8654 455
No 156
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.14 E-value=1e-10 Score=125.54 Aligned_cols=80 Identities=24% Similarity=0.377 Sum_probs=70.1
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
..+..|||||+++++||++++ .+|++++||||+++||+.++..+.++|.....+.++|++||+...+..||+++-
T Consensus 135 ~~~~~LS~G~~qrv~la~al~----~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~- 209 (238)
T cd03249 135 ERGSQLSGGQKQRIAIARALL----RNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAV- 209 (238)
T ss_pred cCCccCCHHHHHHHHHHHHHh----cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEE-
Confidence 457899999999999999987 578999999999999999999999999876667889999999988889999854
Q ss_pred eeeCCc
Q 001073 1145 KFVDGV 1150 (1163)
Q Consensus 1145 ~~~~g~ 1150 (1163)
+.+|.
T Consensus 210 -l~~G~ 214 (238)
T cd03249 210 -LQNGQ 214 (238)
T ss_pred -EECCE
Confidence 44553
No 157
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.14 E-value=6.9e-11 Score=125.49 Aligned_cols=77 Identities=19% Similarity=0.237 Sum_probs=68.6
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhcccee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANVLF 1142 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~~~ 1142 (1163)
.++..|||||+++++||.+|+ .+|++++||||+++||+..+..+.++|.... .+.++|++||+...+ ..||+++
T Consensus 145 ~~~~~LS~G~~qrl~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~ 220 (224)
T TIGR02324 145 LPPATFSGGEQQRVNIARGFI----ADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVM 220 (224)
T ss_pred CCcccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeE
Confidence 468899999999999999987 5789999999999999999999999998764 467999999999876 5899998
Q ss_pred eee
Q 001073 1143 RTK 1145 (1163)
Q Consensus 1143 gv~ 1145 (1163)
.+|
T Consensus 221 ~~~ 223 (224)
T TIGR02324 221 DVT 223 (224)
T ss_pred ecC
Confidence 776
No 158
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.14 E-value=9.2e-11 Score=121.30 Aligned_cols=88 Identities=24% Similarity=0.327 Sum_probs=73.2
Q ss_pred cccccccChHHHHHHHHHHHHHH--hccCCCCEEEeecCccCCCHHhHH-HHHHHHhhhCC--CCeEEEEEeCcchhhhc
Q 001073 1064 KQSLSELSGGQRSLLALSLILAL--LLFKPAPLYILDEVDAALDLSHTQ-NIGRMIKTHFP--HSQFIVVSLKEGMFNNA 1138 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal--~~~~~~p~~~lDE~~~~lD~~~~~-~~~~~l~~~~~--~~q~i~it~~~~~~~~a 1138 (1163)
...+..|||||+++++||+.+|+ ..+.+||+++||||+++||+..+. .+.++|.+... +.++|+|||.+.....|
T Consensus 110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~ 189 (204)
T cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAA 189 (204)
T ss_pred hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhC
Confidence 35688999999999776654433 334788999999999999999999 99999988754 68999999999999999
Q ss_pred cceeeeeeeC-Cce
Q 001073 1139 NVLFRTKFVD-GVS 1151 (1163)
Q Consensus 1139 ~~~~gv~~~~-g~S 1151 (1163)
|+++.+...+ |.|
T Consensus 190 d~i~~l~~~~~~~~ 203 (204)
T cd03240 190 DHIYRVEKDGRQKS 203 (204)
T ss_pred CEEEEEeeCCCCCC
Confidence 9999887755 655
No 159
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=9e-11 Score=126.75 Aligned_cols=76 Identities=21% Similarity=0.239 Sum_probs=68.0
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhccceee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVLFR 1143 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~~g 1143 (1163)
..+..|||||+++++||++|+ .+|++++||||++|||+.++..+.++|.+...+.++|++||+...+ ..||+++-
T Consensus 142 ~~~~~LS~G~~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~ 217 (250)
T PRK14245 142 ESAFALSGGQQQRLCIARAMA----VSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAF 217 (250)
T ss_pred CCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEE
Confidence 467899999999999999997 5889999999999999999999999998876678999999998864 77999866
Q ss_pred e
Q 001073 1144 T 1144 (1163)
Q Consensus 1144 v 1144 (1163)
+
T Consensus 218 l 218 (250)
T PRK14245 218 F 218 (250)
T ss_pred E
Confidence 4
No 160
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=7.5e-11 Score=127.81 Aligned_cols=79 Identities=24% Similarity=0.259 Sum_probs=69.1
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhccceee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVLFR 1143 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~~g 1143 (1163)
.++..|||||+++++||++|+ .+|++++|||||++||+.++..+.++|.++..+.++|++||+...+ .+||+++-
T Consensus 150 ~~~~~LSgG~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~ 225 (258)
T PRK14268 150 SPALSLSGGQQQRLCIARTLA----VKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGF 225 (258)
T ss_pred CChhhCCHHHHHHHHHHHHHH----cCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEE
Confidence 567899999999999999998 5789999999999999999999999998876678999999998764 67998854
Q ss_pred eeeeCC
Q 001073 1144 TKFVDG 1149 (1163)
Q Consensus 1144 v~~~~g 1149 (1163)
|.+|
T Consensus 226 --l~~G 229 (258)
T PRK14268 226 --FLMG 229 (258)
T ss_pred --EECC
Confidence 3455
No 161
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.14 E-value=9.2e-11 Score=127.03 Aligned_cols=77 Identities=27% Similarity=0.280 Sum_probs=68.0
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~~ 1142 (1163)
.+.+..|||||+++++||.+|+ .+|++++|||||++||+.++..+.++|.+...+.++|++||+...+ ..||+++
T Consensus 144 ~~~~~~LSgGq~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~ 219 (253)
T PRK14242 144 HESALGLSGGQQQRLCIARALA----VEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTA 219 (253)
T ss_pred hCCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEE
Confidence 3567899999999999999997 5789999999999999999999999998876678999999998765 6799886
Q ss_pred ee
Q 001073 1143 RT 1144 (1163)
Q Consensus 1143 gv 1144 (1163)
-+
T Consensus 220 ~l 221 (253)
T PRK14242 220 FF 221 (253)
T ss_pred EE
Confidence 54
No 162
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.14 E-value=7.4e-11 Score=128.77 Aligned_cols=77 Identities=22% Similarity=0.285 Sum_probs=67.6
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
...+..|||||+++++||.+|+ .+|+++||||||++||+.++..+.++|.+.. .+..+|+|||+...+ .+||++
T Consensus 131 ~~~~~~LSgG~~qrl~laraL~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i 206 (271)
T PRK13638 131 HQPIQCLSHGQKKRVAIAGALV----LQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAV 206 (271)
T ss_pred cCCchhCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE
Confidence 3568899999999999999998 6889999999999999999999999998764 467899999998876 679988
Q ss_pred eee
Q 001073 1142 FRT 1144 (1163)
Q Consensus 1142 ~gv 1144 (1163)
+-+
T Consensus 207 ~~l 209 (271)
T PRK13638 207 YVL 209 (271)
T ss_pred EEE
Confidence 653
No 163
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.14 E-value=7.1e-11 Score=124.88 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=68.9
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-C-CCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-P-HSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~-~~q~i~it~~~~~-~~~a~~ 1140 (1163)
..++..|||||+++++||.+|+ .+|++++||||+++||+..+..+.++|.+.. + +..+|++||+... ...||+
T Consensus 126 ~~~~~~LS~G~~qr~~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~ 201 (220)
T cd03265 126 DRLVKTYSGGMRRRLEIARSLV----HRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDR 201 (220)
T ss_pred hCChhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 4568899999999999999987 6889999999999999999999999998754 3 6789999999876 456998
Q ss_pred eeeeeeeCCc
Q 001073 1141 LFRTKFVDGV 1150 (1163)
Q Consensus 1141 ~~gv~~~~g~ 1150 (1163)
++- +.+|.
T Consensus 202 i~~--l~~G~ 209 (220)
T cd03265 202 VAI--IDHGR 209 (220)
T ss_pred EEE--EeCCE
Confidence 864 45663
No 164
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.14 E-value=8.5e-11 Score=127.13 Aligned_cols=80 Identities=21% Similarity=0.256 Sum_probs=68.7
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
...+..|||||+++++||.+|+ .+|+++||||||++||+.++..+.++|.... .+..+|++||+...+ .+||++
T Consensus 139 ~~~~~~LS~Gq~qrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i 214 (250)
T PRK11264 139 TSYPRRLSGGQQQRVAIARALA----MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRA 214 (250)
T ss_pred hCChhhCChHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE
Confidence 3568899999999999999998 5789999999999999999999999998764 478999999998765 569988
Q ss_pred eeeeeeCC
Q 001073 1142 FRTKFVDG 1149 (1163)
Q Consensus 1142 ~gv~~~~g 1149 (1163)
+-+ .+|
T Consensus 215 ~~l--~~G 220 (250)
T PRK11264 215 IFM--DQG 220 (250)
T ss_pred EEE--ECC
Confidence 653 455
No 165
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=8.3e-11 Score=127.37 Aligned_cols=80 Identities=25% Similarity=0.287 Sum_probs=69.6
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~~ 1142 (1163)
...+..||||||++++||++|+ .+|+++||||||++||+.++..+.++|.....+.++|+|||++..+ ..||+++
T Consensus 145 ~~~~~~LSgG~~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~ 220 (254)
T PRK14273 145 NTNALSLSGGQQQRLCIARTLA----IEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTA 220 (254)
T ss_pred hCCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 4568899999999999999997 5789999999999999999999999998876678999999999864 6799886
Q ss_pred eeeeeCC
Q 001073 1143 RTKFVDG 1149 (1163)
Q Consensus 1143 gv~~~~g 1149 (1163)
- |.+|
T Consensus 221 ~--l~~G 225 (254)
T PRK14273 221 F--FLNG 225 (254)
T ss_pred E--EECC
Confidence 4 4455
No 166
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.14 E-value=1.2e-10 Score=115.98 Aligned_cols=76 Identities=29% Similarity=0.348 Sum_probs=65.6
Q ss_pred cccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcch-hhhccceeeee
Q 001073 1068 SELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGM-FNNANVLFRTK 1145 (1163)
Q Consensus 1068 ~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~-~~~a~~~~gv~ 1145 (1163)
.+|||||+++++||.+|+ .+|++++||||+++||+.++..+.++|.+.. .+.++|++||+... ...||+++-+
T Consensus 81 ~qLS~G~~qrl~laral~----~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l- 155 (163)
T cd03216 81 YQLSVGERQMVEIARALA----RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVL- 155 (163)
T ss_pred EecCHHHHHHHHHHHHHh----cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE-
Confidence 349999999999999987 6889999999999999999999999998764 47899999999874 5679988664
Q ss_pred eeCC
Q 001073 1146 FVDG 1149 (1163)
Q Consensus 1146 ~~~g 1149 (1163)
.+|
T Consensus 156 -~~g 158 (163)
T cd03216 156 -RDG 158 (163)
T ss_pred -ECC
Confidence 454
No 167
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.14 E-value=8.2e-11 Score=130.37 Aligned_cols=76 Identities=21% Similarity=0.214 Sum_probs=67.1
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
...+..||||||++++||.+|+ .+|+++||||||+|||+..+..+.++|.+.. .+..+|++||+...+ .+||++
T Consensus 130 ~~~~~~LSgG~~qrv~la~al~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i 205 (303)
T TIGR01288 130 DVRVALLSGGMKRRLTLARALI----NDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRL 205 (303)
T ss_pred cCchhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE
Confidence 4568899999999999999997 6889999999999999999999999998763 478999999998865 579988
Q ss_pred ee
Q 001073 1142 FR 1143 (1163)
Q Consensus 1142 ~g 1143 (1163)
+-
T Consensus 206 ~~ 207 (303)
T TIGR01288 206 CV 207 (303)
T ss_pred EE
Confidence 54
No 168
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.14 E-value=9e-11 Score=118.58 Aligned_cols=71 Identities=23% Similarity=0.224 Sum_probs=63.4
Q ss_pred cChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhh-hccceeee
Q 001073 1070 LSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFN-NANVLFRT 1144 (1163)
Q Consensus 1070 lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~-~a~~~~gv 1144 (1163)
|||||+++++||++|+ .+|++++||||+++||+.+...+.++|.+.. ++.++|++||++..+. .||+++-+
T Consensus 96 LS~G~~qrv~laral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l 168 (173)
T cd03230 96 LSGGMKQRLALAQALL----HDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAIL 168 (173)
T ss_pred cCHHHHHHHHHHHHHH----cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEE
Confidence 9999999999999998 6889999999999999999999999998764 4688999999988655 79988653
No 169
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.14 E-value=7.2e-11 Score=144.68 Aligned_cols=77 Identities=26% Similarity=0.309 Sum_probs=70.4
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKF 1146 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~ 1146 (1163)
...||||||||++||++|. .+||++||||||++||+.+...+.+.|....++.++|+||||+.++..||++|-+
T Consensus 483 G~~LSGGQrQRialARAll----~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl-- 556 (588)
T PRK11174 483 AAGLSVGQAQRLALARALL----QPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVM-- 556 (588)
T ss_pred CCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEE--
Confidence 4579999999999999986 7889999999999999999999999998888889999999999999999999764
Q ss_pred eCC
Q 001073 1147 VDG 1149 (1163)
Q Consensus 1147 ~~g 1149 (1163)
.+|
T Consensus 557 ~~G 559 (588)
T PRK11174 557 QDG 559 (588)
T ss_pred eCC
Confidence 455
No 170
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.13 E-value=1e-10 Score=126.36 Aligned_cols=77 Identities=21% Similarity=0.205 Sum_probs=68.4
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~~ 1142 (1163)
...+..|||||+++++||++|+ .+|+++|||||+++||+.++..+.++|.+...+.++|++||++..+ ..||+++
T Consensus 141 ~~~~~~LSgG~~qrv~laral~----~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~ 216 (250)
T PRK14247 141 DAPAGKLSGGQQQRLCIARALA----FQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVA 216 (250)
T ss_pred cCCcccCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 3567899999999999999997 5889999999999999999999999998876678999999998865 6799886
Q ss_pred ee
Q 001073 1143 RT 1144 (1163)
Q Consensus 1143 gv 1144 (1163)
-+
T Consensus 217 ~l 218 (250)
T PRK14247 217 FL 218 (250)
T ss_pred EE
Confidence 54
No 171
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.13 E-value=1e-10 Score=125.13 Aligned_cols=79 Identities=28% Similarity=0.421 Sum_probs=70.2
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
..+..|||||+++++||.+|+ .+|++++||||+++||+.+...+.++|.+...+.++|++||+...+..||+++-
T Consensus 134 ~~~~~LS~G~~qrv~la~al~----~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~- 208 (234)
T cd03251 134 ERGVKLSGGQRQRIAIARALL----KDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVV- 208 (234)
T ss_pred cCCCcCCHHHHHHHHHHHHHh----cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEE-
Confidence 457899999999999999998 578999999999999999999999999887678899999999988888998854
Q ss_pred eeeCC
Q 001073 1145 KFVDG 1149 (1163)
Q Consensus 1145 ~~~~g 1149 (1163)
+.+|
T Consensus 209 -l~~G 212 (234)
T cd03251 209 -LEDG 212 (234)
T ss_pred -ecCC
Confidence 4455
No 172
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.13 E-value=8e-11 Score=121.02 Aligned_cols=91 Identities=25% Similarity=0.302 Sum_probs=74.4
Q ss_pred chhhhhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhh-C-CCCeEEEEEe
Q 001073 1053 LEVCVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH-F-PHSQFIVVSL 1130 (1163)
Q Consensus 1053 ~~~~~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~-~-~~~q~i~it~ 1130 (1163)
+.-.|+..+..++.|.+||||||||+|||+++|. .|++++||||..+||..-+..+-.-|.+. . -+...++|||
T Consensus 121 lL~lvqL~~la~ryP~QLSGGQrQRVALARALA~----eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTH 196 (345)
T COG1118 121 LLRLVQLEGLADRYPAQLSGGQRQRVALARALAV----EPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTH 196 (345)
T ss_pred HHHHhcccchhhcCchhcChHHHHHHHHHHHhhc----CCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeC
Confidence 3445677777788999999999999999999994 67999999999999998777776666653 2 3788999999
Q ss_pred Cc-chhhhccceeeeeeeCC
Q 001073 1131 KE-GMFNNANVLFRTKFVDG 1149 (1163)
Q Consensus 1131 ~~-~~~~~a~~~~gv~~~~g 1149 (1163)
+. +.++.||++. -|.+|
T Consensus 197 D~eea~~ladrvv--vl~~G 214 (345)
T COG1118 197 DQEEALELADRVV--VLNQG 214 (345)
T ss_pred CHHHHHhhcceEE--EecCC
Confidence 96 5799999984 35555
No 173
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.13 E-value=8.5e-11 Score=125.34 Aligned_cols=78 Identities=26% Similarity=0.267 Sum_probs=67.9
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchh-hhcc
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMF-NNAN 1139 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~-~~a~ 1139 (1163)
....+..|||||+++++||++|+ .+|+++|||||++|||+..+..+.++|.+.. .+.++|++||++..+ ..||
T Consensus 123 ~~~~~~~LS~G~~qrv~laral~----~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d 198 (232)
T PRK10771 123 LARLPGQLSGGQRQRVALARCLV----REQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAP 198 (232)
T ss_pred HhCCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 35678899999999999999988 6889999999999999999999999998763 368999999999864 6799
Q ss_pred ceeee
Q 001073 1140 VLFRT 1144 (1163)
Q Consensus 1140 ~~~gv 1144 (1163)
+++-+
T Consensus 199 ~i~~l 203 (232)
T PRK10771 199 RSLVV 203 (232)
T ss_pred EEEEE
Confidence 88553
No 174
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.13 E-value=1.3e-10 Score=123.14 Aligned_cols=79 Identities=23% Similarity=0.371 Sum_probs=69.9
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
..+..|||||+++++||.+|+ .+|++++||||+++||+..+..+.++|.+...+.++|++||+......||+++-
T Consensus 135 ~~~~~LS~G~~qr~~laral~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~- 209 (221)
T cd03244 135 EGGENLSVGQRQLLCLARALL----RKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILV- 209 (221)
T ss_pred cCCCcCCHHHHHHHHHHHHHh----cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEE-
Confidence 457899999999999999998 688999999999999999999999999887667899999999988888998865
Q ss_pred eeeCC
Q 001073 1145 KFVDG 1149 (1163)
Q Consensus 1145 ~~~~g 1149 (1163)
|.+|
T Consensus 210 -l~~g 213 (221)
T cd03244 210 -LDKG 213 (221)
T ss_pred -EECC
Confidence 3455
No 175
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.13 E-value=8.3e-11 Score=124.67 Aligned_cols=77 Identities=22% Similarity=0.212 Sum_probs=68.1
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
...+..|||||+++++||++|+ .+|++++||||+++||+.....+.++|.+.. .+.++|++||++..+ ..||++
T Consensus 119 ~~~~~~LS~G~~~rv~laral~----~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i 194 (223)
T TIGR03740 119 KKKAKQFSLGMKQRLGIAIALL----NHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHI 194 (223)
T ss_pred hhhHhhCCHHHHHHHHHHHHHh----cCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEE
Confidence 4568899999999999999998 6889999999999999999999999998764 467899999999875 679998
Q ss_pred eee
Q 001073 1142 FRT 1144 (1163)
Q Consensus 1142 ~gv 1144 (1163)
+-+
T Consensus 195 ~~l 197 (223)
T TIGR03740 195 GII 197 (223)
T ss_pred EEE
Confidence 664
No 176
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.13 E-value=8.9e-11 Score=124.91 Aligned_cols=77 Identities=19% Similarity=0.276 Sum_probs=67.2
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchh-hhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~-~~a~~ 1140 (1163)
..++..|||||+++++||++|+ .+|+++|||||+++||+.++..+.++|.+.. .+.++|++||+.+.+ ..||+
T Consensus 120 ~~~~~~LS~G~~qrv~laral~----~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~ 195 (230)
T TIGR02770 120 KKYPFQLSGGMLQRVMIALALL----LEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADE 195 (230)
T ss_pred hCChhhcCHHHHHHHHHHHHHh----cCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 3567899999999999999997 5789999999999999999999999998764 368999999998866 57998
Q ss_pred eeee
Q 001073 1141 LFRT 1144 (1163)
Q Consensus 1141 ~~gv 1144 (1163)
++-+
T Consensus 196 i~~l 199 (230)
T TIGR02770 196 VAVM 199 (230)
T ss_pred EEEE
Confidence 8653
No 177
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.13 E-value=1e-10 Score=123.51 Aligned_cols=80 Identities=19% Similarity=0.239 Sum_probs=68.0
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
...+..||||||++++||++|+ .+|+++|||||+++||+..+..+.++|.+.. .+.++|+|||+...+ ..||++
T Consensus 137 ~~~~~~LSgG~~qrv~laral~----~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i 212 (224)
T cd03220 137 DLPVKTYSSGMKARLAFAIATA----LEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRA 212 (224)
T ss_pred hCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 3567899999999999999987 6889999999999999999999999998753 468999999998764 579987
Q ss_pred eeeeeeCC
Q 001073 1142 FRTKFVDG 1149 (1163)
Q Consensus 1142 ~gv~~~~g 1149 (1163)
+-+ .+|
T Consensus 213 ~~l--~~G 218 (224)
T cd03220 213 LVL--EKG 218 (224)
T ss_pred EEE--ECC
Confidence 654 455
No 178
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.13 E-value=7.8e-11 Score=128.34 Aligned_cols=80 Identities=25% Similarity=0.186 Sum_probs=68.0
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-C-CCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-P-HSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~-~~q~i~it~~~~~-~~~a~~ 1140 (1163)
...+..||||||++++||.+|+ .+|+++||||||++||+..+..+.++|.+.. . +.++|+|||+... ...||+
T Consensus 138 ~~~~~~LSgGq~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~ 213 (269)
T PRK11831 138 KLMPSELSGGMARRAALARAIA----LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADH 213 (269)
T ss_pred hCChhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCE
Confidence 4568899999999999999997 5789999999999999999999999998764 2 6899999999765 566998
Q ss_pred eeeeeeeCC
Q 001073 1141 LFRTKFVDG 1149 (1163)
Q Consensus 1141 ~~gv~~~~g 1149 (1163)
++- |.+|
T Consensus 214 v~~--l~~G 220 (269)
T PRK11831 214 AYI--VADK 220 (269)
T ss_pred EEE--EECC
Confidence 754 4455
No 179
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.13 E-value=9.2e-11 Score=123.93 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=67.1
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcch-hhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGM-FNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~-~~~a~~~ 1141 (1163)
...+..||||||++++||++|+ .+|+++|||||+++||+.++..+.++|.+.. ++.++|++||+... ...||++
T Consensus 108 ~~~~~~LS~G~~qrv~laral~----~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i 183 (223)
T TIGR03771 108 DRPVGELSGGQRQRVLVARALA----TRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRV 183 (223)
T ss_pred cCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 4567899999999999999997 6889999999999999999999999998764 47899999999885 5679998
Q ss_pred ee
Q 001073 1142 FR 1143 (1163)
Q Consensus 1142 ~g 1143 (1163)
+-
T Consensus 184 ~~ 185 (223)
T TIGR03771 184 VL 185 (223)
T ss_pred EE
Confidence 74
No 180
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.13 E-value=9.2e-11 Score=121.78 Aligned_cols=74 Identities=27% Similarity=0.248 Sum_probs=66.4
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhh-CCCCeEEEEEeCcchhhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH-FPHSQFIVVSLKEGMFNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~-~~~~q~i~it~~~~~~~~a~~~ 1141 (1163)
..++..|||||+++++||++|+ .+||+++||||+++||+..+..+.++|.+. ..+.++|++||+...+..||..
T Consensus 122 ~~~~~~LS~G~~~rv~laral~----~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~ 196 (200)
T PRK13540 122 DYPCGLLSSGQKRQVALLRLWM----SKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYE 196 (200)
T ss_pred hCChhhcCHHHHHHHHHHHHHh----cCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchh
Confidence 3567799999999999999998 588999999999999999999999999875 3578999999999999999875
No 181
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.13 E-value=9.6e-11 Score=124.99 Aligned_cols=77 Identities=21% Similarity=0.193 Sum_probs=67.3
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~-~~~a~~ 1140 (1163)
...+..|||||+++++||.+|+ .+|++++||||+++||+.++..+.++|.+.. .++.+|++||++.. ...||+
T Consensus 148 ~~~~~~LS~G~~qrl~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~ 223 (236)
T cd03267 148 DTPVRQLSLGQRMRAEIAAALL----HEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARR 223 (236)
T ss_pred cCChhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCE
Confidence 3457899999999999999998 5889999999999999999999999998764 36899999999986 467998
Q ss_pred eeee
Q 001073 1141 LFRT 1144 (1163)
Q Consensus 1141 ~~gv 1144 (1163)
++-+
T Consensus 224 i~~l 227 (236)
T cd03267 224 VLVI 227 (236)
T ss_pred EEEE
Confidence 8664
No 182
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.13 E-value=7.9e-11 Score=130.12 Aligned_cols=80 Identities=18% Similarity=0.194 Sum_probs=68.6
Q ss_pred cccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hh
Q 001073 1060 GGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NN 1137 (1163)
Q Consensus 1060 ~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~ 1137 (1163)
.....+.+..||||||++++||.+|+ ..|+++||||||+|||+.++..+.++|.++. .+.++|++||.+..+ ..
T Consensus 129 ~~~~~~~~~~LS~G~~qrl~la~aL~----~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~ 204 (306)
T PRK13537 129 ENKADAKVGELSGGMKRRLTLARALV----NDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERL 204 (306)
T ss_pred chHhcCchhhCCHHHHHHHHHHHHHh----CCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence 33345678899999999999999987 6889999999999999999999999998864 478999999998854 67
Q ss_pred ccceee
Q 001073 1138 ANVLFR 1143 (1163)
Q Consensus 1138 a~~~~g 1143 (1163)
||+++-
T Consensus 205 ~d~i~i 210 (306)
T PRK13537 205 CDRLCV 210 (306)
T ss_pred CCEEEE
Confidence 998853
No 183
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.13 E-value=1.1e-10 Score=128.32 Aligned_cols=76 Identities=25% Similarity=0.309 Sum_probs=67.3
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
.+++..||||||++++||.+|+ .+|+++||||||++||+..+..+.++|..+. .+.++|+|||++..+ .+||++
T Consensus 139 ~~~~~~LSgGqkqrvaiA~aL~----~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri 214 (288)
T PRK13643 139 EKSPFELSGGQMRRVAIAGILA----MEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYV 214 (288)
T ss_pred cCCcccCCHHHHHHHHHHHHHH----hCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEE
Confidence 4678899999999999999998 4779999999999999999999999998764 478999999998865 679998
Q ss_pred ee
Q 001073 1142 FR 1143 (1163)
Q Consensus 1142 ~g 1143 (1163)
+-
T Consensus 215 ~~ 216 (288)
T PRK13643 215 YL 216 (288)
T ss_pred EE
Confidence 65
No 184
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.12 E-value=1.5e-10 Score=121.07 Aligned_cols=79 Identities=25% Similarity=0.373 Sum_probs=70.0
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
..+..|||||+++++||++|+ .+|++++||||+++||+..+..+.++|.....+.++|++||+.+....||+++-+
T Consensus 121 ~~~~~LS~G~~qrv~laral~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l 196 (207)
T cd03369 121 EGGLNLSQGQRQLLCLARALL----KRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVM 196 (207)
T ss_pred CCCCcCCHHHHHHHHHHHHHh----hCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEE
Confidence 468899999999999999997 5789999999999999999999999998876678999999999887779988654
Q ss_pred eeeCC
Q 001073 1145 KFVDG 1149 (1163)
Q Consensus 1145 ~~~~g 1149 (1163)
.+|
T Consensus 197 --~~g 199 (207)
T cd03369 197 --DAG 199 (207)
T ss_pred --ECC
Confidence 455
No 185
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.12 E-value=8.6e-11 Score=131.03 Aligned_cols=81 Identities=21% Similarity=0.218 Sum_probs=69.6
Q ss_pred ccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-h
Q 001073 1059 FGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-N 1136 (1163)
Q Consensus 1059 ~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~ 1136 (1163)
.+....+.+..||||||++++||.+|+ ..|+++||||||+|||+.++..+.++|.++. .+.++|++||+...+ .
T Consensus 162 L~~~~~~~~~~LS~G~kqrv~lA~aL~----~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~ 237 (340)
T PRK13536 162 LESKADARVSDLSGGMKRRLTLARALI----NDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAER 237 (340)
T ss_pred CchhhCCChhhCCHHHHHHHHHHHHHh----cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH
Confidence 333345678899999999999999998 6789999999999999999999999998864 478999999998765 6
Q ss_pred hccceee
Q 001073 1137 NANVLFR 1143 (1163)
Q Consensus 1137 ~a~~~~g 1143 (1163)
+||+++-
T Consensus 238 ~~d~i~i 244 (340)
T PRK13536 238 LCDRLCV 244 (340)
T ss_pred hCCEEEE
Confidence 7999864
No 186
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.12 E-value=1.3e-10 Score=120.56 Aligned_cols=77 Identities=19% Similarity=0.321 Sum_probs=67.5
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhh--hccceee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFN--NANVLFR 1143 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~--~a~~~~g 1143 (1163)
...|||||+++++||.+++ .+||+++|||||++||+.+...+.++|.+.. .+.++|++||++.... .||+++-
T Consensus 102 ~~~LS~G~~qrv~laral~----~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~ 177 (200)
T cd03217 102 NEGFSGGEKKRNEILQLLL----LEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHV 177 (200)
T ss_pred cccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEE
Confidence 3689999999999999998 6889999999999999999999999998764 3689999999999887 7999866
Q ss_pred eeeeCC
Q 001073 1144 TKFVDG 1149 (1163)
Q Consensus 1144 v~~~~g 1149 (1163)
+ .+|
T Consensus 178 l--~~G 181 (200)
T cd03217 178 L--YDG 181 (200)
T ss_pred E--ECC
Confidence 4 355
No 187
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.12 E-value=9.2e-11 Score=125.80 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=67.3
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-C-CCeEEEEEeCcchh-hhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-P-HSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~-~~q~i~it~~~~~~-~~a~~ 1140 (1163)
..++..|||||+++++||.+|+ .+|++++||||+++||+..+..+.++|.+.. . +.++|++||+...+ ..||+
T Consensus 115 ~~~~~~LSgGq~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~ 190 (251)
T PRK09544 115 DAPMQKLSGGETQRVLLARALL----NRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDE 190 (251)
T ss_pred hCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 3568899999999999999997 5889999999999999999999999998764 3 68999999999875 67999
Q ss_pred eeee
Q 001073 1141 LFRT 1144 (1163)
Q Consensus 1141 ~~gv 1144 (1163)
++-+
T Consensus 191 i~~l 194 (251)
T PRK09544 191 VLCL 194 (251)
T ss_pred EEEE
Confidence 8643
No 188
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.12 E-value=1.2e-10 Score=126.27 Aligned_cols=77 Identities=21% Similarity=0.199 Sum_probs=68.6
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcch-hhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGM-FNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~-~~~a~~~~ 1142 (1163)
...+..|||||+++++||++|+ .+|++++||||+++||+..+..+..+|.+...+.++|+|||+... ...||+++
T Consensus 143 ~~~~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~ 218 (258)
T PRK14241 143 DKPGGGLSGGQQQRLCIARAIA----VEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTA 218 (258)
T ss_pred hCCcccCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE
Confidence 3568899999999999999997 578999999999999999999999999887666899999999876 56899987
Q ss_pred ee
Q 001073 1143 RT 1144 (1163)
Q Consensus 1143 gv 1144 (1163)
-+
T Consensus 219 ~l 220 (258)
T PRK14241 219 FF 220 (258)
T ss_pred EE
Confidence 65
No 189
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.12 E-value=8.7e-11 Score=125.81 Aligned_cols=76 Identities=22% Similarity=0.237 Sum_probs=67.0
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcc-hhhhcccee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEG-MFNNANVLF 1142 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~-~~~~a~~~~ 1142 (1163)
.++..|||||+++++||++|+ .+||++||||||++||+..+..+.++|.+.. .+..+|++||+.. +..+||+++
T Consensus 133 ~~~~~LS~G~~qrl~la~al~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~ 208 (237)
T PRK11614 133 QRAGTMSGGEQQMLAIGRALM----SQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGY 208 (237)
T ss_pred CchhhCCHHHHHHHHHHHHHH----hCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEE
Confidence 467899999999999999998 5789999999999999999999999998764 4789999999986 678899986
Q ss_pred ee
Q 001073 1143 RT 1144 (1163)
Q Consensus 1143 gv 1144 (1163)
-+
T Consensus 209 ~l 210 (237)
T PRK11614 209 VL 210 (237)
T ss_pred EE
Confidence 53
No 190
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.12 E-value=8.4e-11 Score=132.02 Aligned_cols=80 Identities=19% Similarity=0.252 Sum_probs=68.8
Q ss_pred cccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcc-hhh
Q 001073 1060 GGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEG-MFN 1136 (1163)
Q Consensus 1060 ~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~-~~~ 1136 (1163)
.....+.+..|||||+|+++||++|+ .+|++++||||+++||+..+..+...|..... +.++|+|||+.. .+.
T Consensus 125 ~~~~~~~~~~LSgGq~QRvalARAL~----~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~ 200 (356)
T PRK11650 125 EPLLDRKPRELSGGQRQRVAMGRAIV----REPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMT 200 (356)
T ss_pred hhHhhCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 33445678999999999999999998 68899999999999999999999999887533 689999999975 678
Q ss_pred hccceee
Q 001073 1137 NANVLFR 1143 (1163)
Q Consensus 1137 ~a~~~~g 1143 (1163)
.||+++-
T Consensus 201 l~D~i~v 207 (356)
T PRK11650 201 LADRVVV 207 (356)
T ss_pred hCCEEEE
Confidence 8998853
No 191
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.12 E-value=1.1e-10 Score=127.39 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=68.6
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcchhhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGMFNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~~~~a~~~ 1141 (1163)
...+..|||||+++++||.+|+ .+|+++||||||+|||+.++..+.++|.+... +.++|++||++..+..||++
T Consensus 135 ~~~~~~LS~G~~qrv~laral~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i 210 (279)
T PRK13635 135 NREPHRLSGGQKQRVAIAGVLA----LQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRV 210 (279)
T ss_pred hCCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEE
Confidence 4567899999999999999998 58899999999999999999999999988653 68999999999888889988
Q ss_pred eee
Q 001073 1142 FRT 1144 (1163)
Q Consensus 1142 ~gv 1144 (1163)
+-+
T Consensus 211 ~~l 213 (279)
T PRK13635 211 IVM 213 (279)
T ss_pred EEE
Confidence 654
No 192
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.12 E-value=1.3e-10 Score=119.61 Aligned_cols=72 Identities=25% Similarity=0.289 Sum_probs=64.1
Q ss_pred ccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcch--hhhccceeee
Q 001073 1069 ELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGM--FNNANVLFRT 1144 (1163)
Q Consensus 1069 ~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~--~~~a~~~~gv 1144 (1163)
.|||||+++++||.+++ .+||+++||||+++||+.++..+..+|.+.. .+.++|+|||+++. ...||+++-+
T Consensus 108 ~LSgGe~qrv~la~al~----~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l 182 (192)
T cd03232 108 GLSVEQRKRLTIGVELA----AKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLL 182 (192)
T ss_pred cCCHHHhHHHHHHHHHh----cCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEE
Confidence 89999999999999998 5889999999999999999999999998764 47899999999873 6789988653
No 193
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.12 E-value=1.4e-10 Score=126.21 Aligned_cols=77 Identities=19% Similarity=0.205 Sum_probs=67.9
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~~ 1142 (1163)
...+..|||||+++++||++|+ .+|+++|||||+++||+.++..+.++|.....+.++|++||+...+ ..||+++
T Consensus 158 ~~~~~~LSgGq~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~ 233 (267)
T PRK14235 158 HEPGTGLSGGQQQRLCIARAIA----VSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTA 233 (267)
T ss_pred hCCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEE
Confidence 3568899999999999999998 5889999999999999999999999998876678999999998876 6789885
Q ss_pred ee
Q 001073 1143 RT 1144 (1163)
Q Consensus 1143 gv 1144 (1163)
-+
T Consensus 234 ~l 235 (267)
T PRK14235 234 FF 235 (267)
T ss_pred EE
Confidence 53
No 194
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.12 E-value=1.1e-10 Score=122.58 Aligned_cols=80 Identities=26% Similarity=0.339 Sum_probs=68.6
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~-~~~a~~ 1140 (1163)
.+.+..|||||+++++||++|+ .+|++++|||||++||+.+...+.++|.+.. .++++|+|||+... ...||+
T Consensus 123 ~~~~~~LS~G~~qrl~laral~----~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~ 198 (213)
T TIGR01277 123 DRLPEQLSGGQRQRVALARCLV----RPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQ 198 (213)
T ss_pred hCCcccCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCe
Confidence 4567899999999999999997 5889999999999999999999999998764 36899999999876 467998
Q ss_pred eeeeeeeCC
Q 001073 1141 LFRTKFVDG 1149 (1163)
Q Consensus 1141 ~~gv~~~~g 1149 (1163)
++-+ .+|
T Consensus 199 v~~l--~~g 205 (213)
T TIGR01277 199 IAVV--SQG 205 (213)
T ss_pred EEEE--ECC
Confidence 8654 454
No 195
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=1.2e-10 Score=126.65 Aligned_cols=78 Identities=21% Similarity=0.208 Sum_probs=68.5
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcch-hhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGM-FNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~-~~~a~~~~ 1142 (1163)
..++..||||||++++||++|+ .+|++++||||+++||+.++..+.++|.+...+..+|++||++.. ...||+++
T Consensus 149 ~~~~~~LS~G~~qrl~laral~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~ 224 (269)
T PRK14259 149 NESGYSLSGGQQQRLCIARTIA----IEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTA 224 (269)
T ss_pred CCCcccCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 3567899999999999999987 588999999999999999999999999887667889999999865 57899886
Q ss_pred eee
Q 001073 1143 RTK 1145 (1163)
Q Consensus 1143 gv~ 1145 (1163)
-..
T Consensus 225 ~l~ 227 (269)
T PRK14259 225 FFN 227 (269)
T ss_pred EEe
Confidence 643
No 196
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.12 E-value=1.6e-10 Score=115.38 Aligned_cols=77 Identities=26% Similarity=0.349 Sum_probs=65.2
Q ss_pred cChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CC-CeEEEEEeCcchhh-hccceeeeee
Q 001073 1070 LSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PH-SQFIVVSLKEGMFN-NANVLFRTKF 1146 (1163)
Q Consensus 1070 lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~-~q~i~it~~~~~~~-~a~~~~gv~~ 1146 (1163)
||||||++++||++|+ .+|++++||||+++||+.++..+.++|.... .+ ..+|++||+...+. .||+++-+.-
T Consensus 72 LSgGq~qrv~laral~----~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~ 147 (177)
T cd03222 72 LSGGELQRVAIAAALL----RNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEG 147 (177)
T ss_pred CCHHHHHHHHHHHHHh----cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcC
Confidence 9999999999999998 5789999999999999999999999998753 33 78999999988765 6999865543
Q ss_pred eCCc
Q 001073 1147 VDGV 1150 (1163)
Q Consensus 1147 ~~g~ 1150 (1163)
..|+
T Consensus 148 ~~~~ 151 (177)
T cd03222 148 EPGV 151 (177)
T ss_pred CCcc
Confidence 3443
No 197
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=1.5e-10 Score=124.64 Aligned_cols=76 Identities=28% Similarity=0.249 Sum_probs=67.6
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcch-hhhccceee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGM-FNNANVLFR 1143 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~-~~~a~~~~g 1143 (1163)
..+..|||||+++++||.+|+ .+||+++||||+++||+.++..+.++|.+...+.++|+|||+... ...||+++-
T Consensus 138 ~~~~~LS~G~~qrv~laral~----~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~ 213 (246)
T PRK14269 138 QNALALSGGQQQRLCIARALA----IKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAF 213 (246)
T ss_pred CCcccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEE
Confidence 467899999999999999998 688999999999999999999999999887668899999999885 567998865
Q ss_pred e
Q 001073 1144 T 1144 (1163)
Q Consensus 1144 v 1144 (1163)
+
T Consensus 214 l 214 (246)
T PRK14269 214 F 214 (246)
T ss_pred E
Confidence 4
No 198
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.12 E-value=1.2e-10 Score=125.23 Aligned_cols=77 Identities=23% Similarity=0.251 Sum_probs=67.4
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
...+..|||||+++++||++|+ .+|+++|||||+++||+.++..+..+|.+.. .+.++|++||+...+ ..||++
T Consensus 136 ~~~~~~LS~G~~qrv~laral~----~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i 211 (242)
T PRK11124 136 DRFPLHLSGGQQQRVAIARALM----MEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRV 211 (242)
T ss_pred hCChhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEE
Confidence 3567899999999999999998 5789999999999999999999999998764 478899999998876 579988
Q ss_pred eee
Q 001073 1142 FRT 1144 (1163)
Q Consensus 1142 ~gv 1144 (1163)
+-+
T Consensus 212 ~~l 214 (242)
T PRK11124 212 VYM 214 (242)
T ss_pred EEE
Confidence 654
No 199
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.12 E-value=8.7e-11 Score=132.95 Aligned_cols=76 Identities=22% Similarity=0.263 Sum_probs=66.8
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcc-hhhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEG-MFNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~-~~~~a~~ 1140 (1163)
.+.+..|||||||+++||++|+ .+|++++||||+++||+..+..+..+|.+.. .+.++|+|||+.. .+..||+
T Consensus 128 ~~~~~~LSgGq~QRvaLAraL~----~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~ 203 (369)
T PRK11000 128 DRKPKALSGGQRQRVAIGRTLV----AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADK 203 (369)
T ss_pred cCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCE
Confidence 4568899999999999999998 5789999999999999999999999998763 3789999999986 5678998
Q ss_pred eee
Q 001073 1141 LFR 1143 (1163)
Q Consensus 1141 ~~g 1143 (1163)
++-
T Consensus 204 i~v 206 (369)
T PRK11000 204 IVV 206 (369)
T ss_pred EEE
Confidence 854
No 200
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.11 E-value=1e-10 Score=120.58 Aligned_cols=67 Identities=18% Similarity=0.272 Sum_probs=59.6
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcch
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGM 1134 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~ 1134 (1163)
.+.+..|||||+++++||++|+ .+|+++|||||+++||+.++..+.++|.+.. .+..+|+|||+++.
T Consensus 122 ~~~~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 122 ERPTHCLSGGEKKRVAIAGAVA----MRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred hCChhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 3567899999999999999987 6889999999999999999999999998764 46899999999764
No 201
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.11 E-value=1e-10 Score=128.24 Aligned_cols=80 Identities=20% Similarity=0.260 Sum_probs=69.4
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcchhh-hccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGMFN-NANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~~~-~a~~ 1140 (1163)
...+..|||||+++++||.+|+ .+||++|||||++|||+.++..+..+|.+... +.++|++||+...+. +||+
T Consensus 136 ~~~~~~LS~G~~qrl~laraL~----~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dr 211 (283)
T PRK13636 136 DKPTHCLSFGQKKRVAIAGVLV----MEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDN 211 (283)
T ss_pred hCCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCE
Confidence 4678999999999999999997 58899999999999999999999999987643 789999999998764 7998
Q ss_pred eeeeeeeCC
Q 001073 1141 LFRTKFVDG 1149 (1163)
Q Consensus 1141 ~~gv~~~~g 1149 (1163)
++- |.+|
T Consensus 212 i~~--l~~G 218 (283)
T PRK13636 212 VFV--MKEG 218 (283)
T ss_pred EEE--EECC
Confidence 854 3455
No 202
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.11 E-value=1.2e-10 Score=125.07 Aligned_cols=80 Identities=26% Similarity=0.331 Sum_probs=68.7
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
.+.+..|||||+++++||.+|+ .+||++||||||++||+.++..+.++|.... .+..+|++||+.... ..||++
T Consensus 131 ~~~~~~LS~G~~qrv~la~al~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i 206 (240)
T PRK09493 131 HHYPSELSGGQQQRVAIARALA----VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRL 206 (240)
T ss_pred hcChhhcCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 3567899999999999999998 5789999999999999999999999998764 468899999998876 569988
Q ss_pred eeeeeeCC
Q 001073 1142 FRTKFVDG 1149 (1163)
Q Consensus 1142 ~gv~~~~g 1149 (1163)
+-+ .+|
T Consensus 207 ~~l--~~G 212 (240)
T PRK09493 207 IFI--DKG 212 (240)
T ss_pred EEE--ECC
Confidence 653 454
No 203
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.11 E-value=1.7e-10 Score=123.72 Aligned_cols=76 Identities=24% Similarity=0.348 Sum_probs=68.1
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
..+..|||||+++++||.+|+ .+|+++|||||+++||+.+...+..+|.....+.++|++||+......||+++-+
T Consensus 133 ~~~~~LS~G~~~rl~la~aL~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l 208 (236)
T cd03253 133 ERGLKLSGGEKQRVAIARAIL----KNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVL 208 (236)
T ss_pred cCCCcCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEE
Confidence 457899999999999999998 6889999999999999999999999998875578899999999888889988653
No 204
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.11 E-value=1.1e-10 Score=128.10 Aligned_cols=77 Identities=29% Similarity=0.342 Sum_probs=67.7
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchh-hhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~-~~a~~ 1140 (1163)
...+..|||||+++++||.+|+ .+|+++|||||++|||+.++..+..+|.++. .+.++|+|||+.+.+ .+||+
T Consensus 140 ~~~~~~LSgGq~qrv~laraL~----~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dr 215 (286)
T PRK13646 140 SQSPFQMSGGQMRKIAIVSILA----MNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADE 215 (286)
T ss_pred hCCcccCCHHHHHHHHHHHHHH----hCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCE
Confidence 3568899999999999999998 4779999999999999999999999998763 478999999998864 68998
Q ss_pred eeee
Q 001073 1141 LFRT 1144 (1163)
Q Consensus 1141 ~~gv 1144 (1163)
++-+
T Consensus 216 i~~l 219 (286)
T PRK13646 216 VIVM 219 (286)
T ss_pred EEEE
Confidence 8643
No 205
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.11 E-value=1.3e-10 Score=126.60 Aligned_cols=77 Identities=25% Similarity=0.279 Sum_probs=68.5
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~~~ 1142 (1163)
...+..|||||+++++||.+|+ .+|++++|||||+|||+.++..+.++|..+. .+.++|++||+...+..||+++
T Consensus 131 ~~~~~~LS~G~~qrv~laral~----~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~ 206 (274)
T PRK13644 131 HRSPKTLSGGQGQCVALAGILT----MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRII 206 (274)
T ss_pred cCCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEE
Confidence 3567899999999999999998 6889999999999999999999999998764 4789999999999888899885
Q ss_pred ee
Q 001073 1143 RT 1144 (1163)
Q Consensus 1143 gv 1144 (1163)
-+
T Consensus 207 ~l 208 (274)
T PRK13644 207 VM 208 (274)
T ss_pred EE
Confidence 43
No 206
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.11 E-value=1.2e-10 Score=128.13 Aligned_cols=77 Identities=25% Similarity=0.232 Sum_probs=67.5
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~-~~~a~~ 1140 (1163)
..++..|||||+++++||.+|+ .+|+++||||||++||+.....+.++|.+.. .+.++|+|||+... ..+||+
T Consensus 140 ~~~~~~LSgGq~qrv~lAraL~----~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~dr 215 (290)
T PRK13634 140 ARSPFELSGGQMRRVAIAGVLA----MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQ 215 (290)
T ss_pred hCCcccCCHHHHHHHHHHHHHH----cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 4578899999999999999998 5779999999999999999999999998864 37899999999876 467998
Q ss_pred eeee
Q 001073 1141 LFRT 1144 (1163)
Q Consensus 1141 ~~gv 1144 (1163)
++-+
T Consensus 216 v~~l 219 (290)
T PRK13634 216 IVVM 219 (290)
T ss_pred EEEE
Confidence 8653
No 207
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.11 E-value=1.2e-10 Score=123.58 Aligned_cols=81 Identities=23% Similarity=0.290 Sum_probs=69.4
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcch-hhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGM-FNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~-~~~a~~~ 1141 (1163)
...+..|||||+++++||++|+ .+||+++||||+++||+..+..+.++|.+.. .+.++|++||+... ..+||++
T Consensus 127 ~~~~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i 202 (222)
T cd03224 127 KQLAGTLSGGEQQMLAIARALM----SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRA 202 (222)
T ss_pred hCchhhCCHHHHHHHHHHHHHh----cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEE
Confidence 3567899999999999999987 6889999999999999999999999998764 46899999999886 5679988
Q ss_pred eeeeeeCCc
Q 001073 1142 FRTKFVDGV 1150 (1163)
Q Consensus 1142 ~gv~~~~g~ 1150 (1163)
+-+ .+|.
T Consensus 203 ~~l--~~G~ 209 (222)
T cd03224 203 YVL--ERGR 209 (222)
T ss_pred EEe--eCCe
Confidence 654 4553
No 208
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.11 E-value=1.2e-10 Score=129.46 Aligned_cols=80 Identities=19% Similarity=0.281 Sum_probs=69.0
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchh-hhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~-~~a~~ 1140 (1163)
...+..|||||+|+++||++|+ ..|+++|+||||++||+.++..+.++|.++. .+..+|+|||+.... .+||+
T Consensus 148 ~~~p~~LSgGq~QRv~iArAL~----~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adr 223 (326)
T PRK11022 148 DVYPHQLSGGMSQRVMIAMAIA----CRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHK 223 (326)
T ss_pred hCCchhCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 3568899999999999999998 4779999999999999999999999998864 368999999999876 67999
Q ss_pred eeeeeeeCC
Q 001073 1141 LFRTKFVDG 1149 (1163)
Q Consensus 1141 ~~gv~~~~g 1149 (1163)
++- |.+|
T Consensus 224 i~v--m~~G 230 (326)
T PRK11022 224 IIV--MYAG 230 (326)
T ss_pred EEE--EECC
Confidence 854 4444
No 209
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.11 E-value=1.3e-10 Score=129.24 Aligned_cols=76 Identities=20% Similarity=0.230 Sum_probs=67.5
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchhh-hccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMFN-NANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~~-~a~~ 1140 (1163)
.+.+..|||||+||++||++|+ .+|+++|+||||++||...+..+.++|.++. .+..+|+|||+..++. .||+
T Consensus 149 ~~~p~~LSgGq~QRv~iArAL~----~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adr 224 (327)
T PRK11308 149 DRYPHMFSGGQRQRIAIARALM----LDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADE 224 (327)
T ss_pred cCCCccCCHHHHHHHHHHHHHH----cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 4578999999999999999998 5779999999999999999999999998764 3789999999998875 6998
Q ss_pred eee
Q 001073 1141 LFR 1143 (1163)
Q Consensus 1141 ~~g 1143 (1163)
++-
T Consensus 225 v~v 227 (327)
T PRK11308 225 VMV 227 (327)
T ss_pred EEE
Confidence 854
No 210
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.11 E-value=1.4e-10 Score=125.95 Aligned_cols=80 Identities=25% Similarity=0.213 Sum_probs=69.3
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~~ 1142 (1163)
...+..|||||+++++||.+|+ .+|++++||||+++||+.++..+.++|.+...+.++|++||+...+ ..||+++
T Consensus 151 ~~~~~~LS~Gq~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~ 226 (260)
T PRK10744 151 HQSGYSLSGGQQQRLCIARGIA----IRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTA 226 (260)
T ss_pred hcCCCCCCHHHHHHHHHHHHHH----CCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEE
Confidence 3567899999999999999998 5889999999999999999999999998876678999999998865 5799886
Q ss_pred eeeeeCC
Q 001073 1143 RTKFVDG 1149 (1163)
Q Consensus 1143 gv~~~~g 1149 (1163)
- +.+|
T Consensus 227 ~--l~~G 231 (260)
T PRK10744 227 F--MYLG 231 (260)
T ss_pred E--EECC
Confidence 5 3455
No 211
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.11 E-value=1.2e-10 Score=129.56 Aligned_cols=80 Identities=20% Similarity=0.232 Sum_probs=69.1
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchhh-hccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMFN-NANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~~-~a~~ 1140 (1163)
.+.+..|||||+|+++||++|+ ..|+++|+||||++||+.....+.++|.++. .+.++|+|||+..... +||+
T Consensus 156 ~~~p~~LSgG~~QRv~iArAL~----~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dr 231 (331)
T PRK15079 156 NRYPHEFSGGQCQRIGIARALI----LEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDR 231 (331)
T ss_pred cCCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 4678999999999999999998 5779999999999999999999999998764 3789999999998764 6998
Q ss_pred eeeeeeeCC
Q 001073 1141 LFRTKFVDG 1149 (1163)
Q Consensus 1141 ~~gv~~~~g 1149 (1163)
++- |.+|
T Consensus 232 i~v--l~~G 238 (331)
T PRK15079 232 VLV--MYLG 238 (331)
T ss_pred EEE--EECC
Confidence 854 4455
No 212
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.11 E-value=1.3e-10 Score=126.10 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=67.2
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcchhh-hccce
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGMFN-NANVL 1141 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~~~-~a~~~ 1141 (1163)
..+..|||||+++++||++|+ .+|+++||||||++||+.+...+.++|..... +..+|+|||+..... .||++
T Consensus 147 ~~~~~LS~Gq~qrl~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i 222 (258)
T PRK11701 147 DLPTTFSGGMQQRLQIARNLV----THPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRL 222 (258)
T ss_pred CCCccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEE
Confidence 567899999999999999997 68899999999999999999999999987543 689999999998875 79988
Q ss_pred eee
Q 001073 1142 FRT 1144 (1163)
Q Consensus 1142 ~gv 1144 (1163)
+-+
T Consensus 223 ~~l 225 (258)
T PRK11701 223 LVM 225 (258)
T ss_pred EEE
Confidence 654
No 213
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.11 E-value=1.3e-10 Score=128.60 Aligned_cols=76 Identities=21% Similarity=0.233 Sum_probs=67.9
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcc-hhhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEG-MFNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~-~~~~a~~~~ 1142 (1163)
.+.+..||||||++++||.+|+ ..|+++||||||+|||+..+..+..+|.....+.++|++||.+. +..+||+++
T Consensus 128 ~~~~~~LS~G~~qrv~la~al~----~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~ 203 (301)
T TIGR03522 128 HKKIGQLSKGYRQRVGLAQALI----HDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVI 203 (301)
T ss_pred cCchhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEE
Confidence 4568899999999999999997 68899999999999999999999999988766789999999987 567799885
Q ss_pred e
Q 001073 1143 R 1143 (1163)
Q Consensus 1143 g 1143 (1163)
-
T Consensus 204 ~ 204 (301)
T TIGR03522 204 I 204 (301)
T ss_pred E
Confidence 3
No 214
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.11 E-value=1.5e-10 Score=125.02 Aligned_cols=77 Identities=26% Similarity=0.339 Sum_probs=68.4
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcc-hhhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEG-MFNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~-~~~~a~~~~ 1142 (1163)
..++..|||||+++++||++|+ .+|++++||||+++||+.++..+.++|.....+.++|++||+.. +..+||+++
T Consensus 141 ~~~~~~LS~Gq~qr~~la~al~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~ 216 (250)
T PRK14262 141 NKPGTRLSGGQQQRLCIARALA----VEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIA 216 (250)
T ss_pred hCChhhcCHHHHHHHHHHHHHh----CCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEE
Confidence 4568899999999999999998 58899999999999999999999999988766789999999988 467799886
Q ss_pred ee
Q 001073 1143 RT 1144 (1163)
Q Consensus 1143 gv 1144 (1163)
-+
T Consensus 217 ~l 218 (250)
T PRK14262 217 FM 218 (250)
T ss_pred EE
Confidence 53
No 215
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.11 E-value=1.3e-10 Score=125.74 Aligned_cols=81 Identities=23% Similarity=0.258 Sum_probs=69.7
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcch-hhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGM-FNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~-~~~a~~~~ 1142 (1163)
.+.+..||||||++++||++|+ .+|+++|||||+++||+.++..+..+|.+...+.++|++||+... ..+||+++
T Consensus 143 ~~~~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~ 218 (252)
T PRK14239 143 HDSALGLSGGQQQRVCIARVLA----TSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTG 218 (252)
T ss_pred hcCcccCCHHHHHHHHHHHHHh----cCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEE
Confidence 3568899999999999999987 688999999999999999999999999887656899999999875 56799986
Q ss_pred eeeeeCCc
Q 001073 1143 RTKFVDGV 1150 (1163)
Q Consensus 1143 gv~~~~g~ 1150 (1163)
- |.+|.
T Consensus 219 ~--l~~G~ 224 (252)
T PRK14239 219 F--FLDGD 224 (252)
T ss_pred E--EECCE
Confidence 5 34553
No 216
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.11 E-value=1.2e-10 Score=125.04 Aligned_cols=81 Identities=25% Similarity=0.287 Sum_probs=69.3
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~-~~~a~~ 1140 (1163)
.+.+..|||||+++++||.+|+ .+|+++|||||+++||+.++..+.++|.+.. .+..+|++||+... ...||+
T Consensus 130 ~~~~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~ 205 (242)
T cd03295 130 DRYPHELSGGQQQRVGVARALA----ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADR 205 (242)
T ss_pred hcChhhCCHHHHHHHHHHHHHh----cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCE
Confidence 4567899999999999999987 6889999999999999999999999998864 26889999999884 567998
Q ss_pred eeeeeeeCCc
Q 001073 1141 LFRTKFVDGV 1150 (1163)
Q Consensus 1141 ~~gv~~~~g~ 1150 (1163)
++- +.+|.
T Consensus 206 i~~--l~~G~ 213 (242)
T cd03295 206 IAI--MKNGE 213 (242)
T ss_pred EEE--EECCE
Confidence 864 45553
No 217
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.11 E-value=1.1e-10 Score=130.96 Aligned_cols=84 Identities=23% Similarity=0.263 Sum_probs=70.4
Q ss_pred cccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC---CCeEEEEEeCcc-hh
Q 001073 1060 GGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP---HSQFIVVSLKEG-MF 1135 (1163)
Q Consensus 1060 ~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~---~~q~i~it~~~~-~~ 1135 (1163)
.+...+.+..|||||||+++||++|+ .+|++++||||+++||+..+..+...|..+.. +.++|+|||+.. .+
T Consensus 128 ~~~~~~~~~~LSgGq~QRvaLARAL~----~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~ 203 (362)
T TIGR03258 128 GDAAAHLPAQLSGGMQQRIAIARAIA----IEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDAL 203 (362)
T ss_pred CchhhCChhhCCHHHHHHHHHHHHHh----cCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHH
Confidence 33345678999999999999999998 68899999999999999999999999987543 679999999986 47
Q ss_pred hhccceeeeeeeCC
Q 001073 1136 NNANVLFRTKFVDG 1149 (1163)
Q Consensus 1136 ~~a~~~~gv~~~~g 1149 (1163)
..||+++- |.+|
T Consensus 204 ~l~dri~v--l~~G 215 (362)
T TIGR03258 204 TLADKAGI--MKDG 215 (362)
T ss_pred HhCCEEEE--EECC
Confidence 88998843 4444
No 218
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.11 E-value=1.5e-10 Score=120.60 Aligned_cols=73 Identities=25% Similarity=0.348 Sum_probs=64.3
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~ 1140 (1163)
..++..|||||+++++||++|+ .+|++++|||||++||+.++..+.++|.+.. .+.++|++||+...+..++.
T Consensus 124 ~~~~~~LS~G~~qrl~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~ 197 (204)
T PRK13538 124 DVPVRQLSAGQQRRVALARLWL----TRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKV 197 (204)
T ss_pred hCChhhcCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCc
Confidence 4568899999999999999997 6889999999999999999999999998763 46899999999998866544
No 219
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.11 E-value=1e-10 Score=127.60 Aligned_cols=75 Identities=20% Similarity=0.301 Sum_probs=65.6
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC-C-CeEEEEEeCcchhhh-ccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP-H-SQFIVVSLKEGMFNN-ANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~-~-~q~i~it~~~~~~~~-a~~ 1140 (1163)
.+.+..||||+|++++||.+|+ ..|+++||||||+||||..+..|.++|+.++. + ..+|++||.++-++. ||+
T Consensus 131 ~~~~~~lS~G~kqrl~ia~aL~----~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~ 206 (293)
T COG1131 131 NKKVRTLSGGMKQRLSIALALL----HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDR 206 (293)
T ss_pred CcchhhcCHHHHHHHHHHHHHh----cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCE
Confidence 4568999999999999999887 67899999999999999999999999998765 3 589999999875444 997
Q ss_pred ee
Q 001073 1141 LF 1142 (1163)
Q Consensus 1141 ~~ 1142 (1163)
++
T Consensus 207 v~ 208 (293)
T COG1131 207 VI 208 (293)
T ss_pred EE
Confidence 64
No 220
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.6e-10 Score=127.81 Aligned_cols=78 Identities=26% Similarity=0.379 Sum_probs=70.8
Q ss_pred cccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeee
Q 001073 1066 SLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTK 1145 (1163)
Q Consensus 1066 ~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~ 1145 (1163)
.-..|||||++|.+||++|- +++|+.+|||||.|||+..++.++.+|.++..+.+.|+||||..-.+.+|+++-
T Consensus 471 ~G~~LSGGE~rRLAlAR~LL----~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIiv-- 544 (573)
T COG4987 471 GGRRLSGGERRRLALARALL----HDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIV-- 544 (573)
T ss_pred CCCcCCchHHHHHHHHHHHH----cCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEE--
Confidence 34689999999999999884 699999999999999999999999999999999999999999999999999864
Q ss_pred eeCC
Q 001073 1146 FVDG 1149 (1163)
Q Consensus 1146 ~~~g 1149 (1163)
|.+|
T Consensus 545 l~~G 548 (573)
T COG4987 545 LDNG 548 (573)
T ss_pred EECC
Confidence 3455
No 221
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.11 E-value=1.6e-10 Score=130.93 Aligned_cols=83 Identities=20% Similarity=0.311 Sum_probs=71.1
Q ss_pred hccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-
Q 001073 1058 AFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF- 1135 (1163)
Q Consensus 1058 ~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~- 1135 (1163)
+......+++..||||||++++||.+|+ ..|++++|||||++||+.....+..+|+++. .+.++|++||+.+..
T Consensus 128 gl~~~~~~~~~~LSgGerQRv~IArAL~----~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~ 203 (402)
T PRK09536 128 GVAQFADRPVTSLSGGERQRVLLARALA----QATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAA 203 (402)
T ss_pred CCchhhcCChhhCCHHHHHHHHHHHHHH----cCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence 3344445678999999999999999998 6789999999999999999999999998875 467899999998876
Q ss_pred hhccceeee
Q 001073 1136 NNANVLFRT 1144 (1163)
Q Consensus 1136 ~~a~~~~gv 1144 (1163)
.+||+++-+
T Consensus 204 ~~adrii~l 212 (402)
T PRK09536 204 RYCDELVLL 212 (402)
T ss_pred HhCCEEEEE
Confidence 679998643
No 222
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=1.3e-10 Score=126.35 Aligned_cols=81 Identities=22% Similarity=0.318 Sum_probs=69.4
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchh-hhcc
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMF-NNAN 1139 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~-~~a~ 1139 (1163)
....+..|||||+++++||.+|+ .+|+++||||||++||+.++..+..+|.+.. .+..+|++||+...+ ..||
T Consensus 141 ~~~~~~~LSgG~~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d 216 (265)
T PRK10575 141 AHRLVDSLSGGERQRAWIAMLVA----QDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCD 216 (265)
T ss_pred hcCCcccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 34568899999999999999998 5889999999999999999999999998764 368999999998865 6799
Q ss_pred ceeeeeeeCC
Q 001073 1140 VLFRTKFVDG 1149 (1163)
Q Consensus 1140 ~~~gv~~~~g 1149 (1163)
+++- |.+|
T Consensus 217 ~i~~--l~~G 224 (265)
T PRK10575 217 YLVA--LRGG 224 (265)
T ss_pred EEEE--EECC
Confidence 8864 3455
No 223
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=1.4e-10 Score=126.51 Aligned_cols=77 Identities=23% Similarity=0.276 Sum_probs=67.6
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchhhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMFNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~~~a~~~ 1141 (1163)
...+..|||||+++++||.+|+ .+||++|||||++|||+.++..+..+|.+.. .+.++|++||++.....||++
T Consensus 137 ~~~~~~LS~G~~qrl~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i 212 (269)
T PRK13648 137 DYEPNALSGGQKQRVAIAGVLA----LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHV 212 (269)
T ss_pred hCCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEE
Confidence 3467899999999999999998 6889999999999999999999999998764 368999999999877779988
Q ss_pred eee
Q 001073 1142 FRT 1144 (1163)
Q Consensus 1142 ~gv 1144 (1163)
+-+
T Consensus 213 ~~l 215 (269)
T PRK13648 213 IVM 215 (269)
T ss_pred EEE
Confidence 653
No 224
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.10 E-value=1.8e-10 Score=120.89 Aligned_cols=78 Identities=29% Similarity=0.365 Sum_probs=67.5
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhh-CCCCeEEEEEeCcch-hhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH-FPHSQFIVVSLKEGM-FNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~-~~~~q~i~it~~~~~-~~~a~~~ 1141 (1163)
...+..|||||+++++||++|+ .+|++++||||+++||+.+...+.++|... ..++++|++||+... ...||++
T Consensus 132 ~~~~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i 207 (214)
T PRK13543 132 DTLVRQLSAGQKKRLALARLWL----SPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRM 207 (214)
T ss_pred cCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceE
Confidence 4567899999999999999998 688999999999999999999999999765 346899999999875 4678888
Q ss_pred eeee
Q 001073 1142 FRTK 1145 (1163)
Q Consensus 1142 ~gv~ 1145 (1163)
+-+.
T Consensus 208 ~~l~ 211 (214)
T PRK13543 208 LTLE 211 (214)
T ss_pred EEEe
Confidence 6543
No 225
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=1.2e-10 Score=127.45 Aligned_cols=77 Identities=26% Similarity=0.229 Sum_probs=68.3
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchhhhccc
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMFNNANV 1140 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~~~a~~ 1140 (1163)
..+.+..|||||+++++||.+|+ .+|+++|||||++|||+.++..+..+|.... .+.++|++||++.....||+
T Consensus 138 ~~~~~~~LS~G~~qrv~laral~----~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~ 213 (280)
T PRK13633 138 RRHAPHLLSGGQKQRVAIAGILA----MRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADR 213 (280)
T ss_pred hhCCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCE
Confidence 34578999999999999999997 6789999999999999999999999998764 37899999999998877998
Q ss_pred eee
Q 001073 1141 LFR 1143 (1163)
Q Consensus 1141 ~~g 1143 (1163)
++-
T Consensus 214 v~~ 216 (280)
T PRK13633 214 IIV 216 (280)
T ss_pred EEE
Confidence 854
No 226
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=1.4e-10 Score=126.63 Aligned_cols=76 Identities=22% Similarity=0.300 Sum_probs=67.0
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
.+.+..|||||+++++||.+|+ .+||++||||||+|||+.++..+.++|.... .+.++|++||+.... .+||++
T Consensus 132 ~~~~~~LS~Gq~qrv~laral~----~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i 207 (275)
T PRK13639 132 NKPPHHLSGGQKKRVAIAGILA----MKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKV 207 (275)
T ss_pred cCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEE
Confidence 4568899999999999999997 6889999999999999999999999998764 378999999998865 579987
Q ss_pred ee
Q 001073 1142 FR 1143 (1163)
Q Consensus 1142 ~g 1143 (1163)
+-
T Consensus 208 ~~ 209 (275)
T PRK13639 208 YV 209 (275)
T ss_pred EE
Confidence 54
No 227
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.10 E-value=1.4e-10 Score=126.08 Aligned_cols=78 Identities=26% Similarity=0.305 Sum_probs=68.5
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcc-hhhhcc
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEG-MFNNAN 1139 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~-~~~~a~ 1139 (1163)
..+.+..|||||+++++||++|+ .+|++++|||||+|||+.++..+.++|.+.. .+.++|++||+.. ...+||
T Consensus 137 ~~~~~~~LS~Gq~qrv~laral~----~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d 212 (265)
T PRK10253 137 ADQSVDTLSGGQRQRAWIAMVLA----QETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYAS 212 (265)
T ss_pred hcCCcccCChHHHHHHHHHHHHh----cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 34678999999999999999998 5889999999999999999999999998764 3679999999987 567899
Q ss_pred ceeee
Q 001073 1140 VLFRT 1144 (1163)
Q Consensus 1140 ~~~gv 1144 (1163)
+++-+
T Consensus 213 ~i~~l 217 (265)
T PRK10253 213 HLIAL 217 (265)
T ss_pred EEEEE
Confidence 98654
No 228
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.10 E-value=1.5e-10 Score=141.56 Aligned_cols=78 Identities=27% Similarity=0.432 Sum_probs=70.5
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKF 1146 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~ 1146 (1163)
...||||||||++||++|. .+||++||||||++||+.++..+.+.|....++.++|+||||+.++..||++|- |
T Consensus 469 g~~LSgGq~QRialARall----~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~--l 542 (588)
T PRK13657 469 GRQLSGGERQRLAIARALL----KDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILV--F 542 (588)
T ss_pred CCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEE--E
Confidence 4579999999999999987 799999999999999999999999999887778999999999999999999965 4
Q ss_pred eCCc
Q 001073 1147 VDGV 1150 (1163)
Q Consensus 1147 ~~g~ 1150 (1163)
.+|.
T Consensus 543 ~~G~ 546 (588)
T PRK13657 543 DNGR 546 (588)
T ss_pred ECCE
Confidence 4554
No 229
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.10 E-value=1.3e-10 Score=130.44 Aligned_cols=81 Identities=22% Similarity=0.285 Sum_probs=69.7
Q ss_pred ccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcc-hh
Q 001073 1059 FGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEG-MF 1135 (1163)
Q Consensus 1059 ~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~-~~ 1135 (1163)
..+...+.+..|||||+|+++||++|+ .+|++++||||+++||+..+..+.++|.+... +.++|+|||+.. .+
T Consensus 126 L~~~~~~~~~~LSgGq~QRvalArAL~----~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~ 201 (353)
T PRK10851 126 LAHLADRYPAQLSGGQKQRVALARALA----VEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAM 201 (353)
T ss_pred CchhhhCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 334445678999999999999999998 68899999999999999999999999987643 679999999987 47
Q ss_pred hhccceee
Q 001073 1136 NNANVLFR 1143 (1163)
Q Consensus 1136 ~~a~~~~g 1143 (1163)
..||+++-
T Consensus 202 ~~~Dri~v 209 (353)
T PRK10851 202 EVADRVVV 209 (353)
T ss_pred HhCCEEEE
Confidence 88998854
No 230
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=1.4e-10 Score=126.56 Aligned_cols=81 Identities=22% Similarity=0.318 Sum_probs=69.8
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcchhhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGMFNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~~~~a~~~ 1141 (1163)
...+..|||||+++++||++|+ .+||+++||||++|||+..+..+.++|.+... +.++|++||+...+..||++
T Consensus 137 ~~~~~~LS~G~~qrl~laral~----~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v 212 (271)
T PRK13632 137 DKEPQNLSGGQKQRVAIASVLA----LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKV 212 (271)
T ss_pred hCCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEE
Confidence 4567899999999999999998 68899999999999999999999999988643 47999999999887789988
Q ss_pred eeeeeeCCc
Q 001073 1142 FRTKFVDGV 1150 (1163)
Q Consensus 1142 ~gv~~~~g~ 1150 (1163)
+- |.+|.
T Consensus 213 ~~--l~~G~ 219 (271)
T PRK13632 213 IV--FSEGK 219 (271)
T ss_pred EE--EECCE
Confidence 64 44553
No 231
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=1.3e-10 Score=127.09 Aligned_cols=76 Identities=24% Similarity=0.297 Sum_probs=67.7
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcchhhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGMFNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~~~~a~~~ 1141 (1163)
..++..|||||+++++||.+|+ .+|+++|||||+++||+.++..+.++|..... +.++|+|||+......||++
T Consensus 135 ~~~~~~LS~G~~qrv~lAraL~----~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i 210 (277)
T PRK13642 135 TREPARLSGGQKQRVAVAGIIA----LRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRI 210 (277)
T ss_pred hCCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEE
Confidence 3467899999999999999998 57899999999999999999999999987643 78999999999888789988
Q ss_pred ee
Q 001073 1142 FR 1143 (1163)
Q Consensus 1142 ~g 1143 (1163)
+-
T Consensus 211 ~~ 212 (277)
T PRK13642 211 LV 212 (277)
T ss_pred EE
Confidence 54
No 232
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=1.4e-10 Score=127.38 Aligned_cols=77 Identities=26% Similarity=0.318 Sum_probs=67.3
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
..++..||||||++++||++|+ .+|+++||||||++||+.++..+.++|.+.. .+..+|++||++..+ ..||++
T Consensus 140 ~~~~~~LSgG~~qrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i 215 (280)
T PRK13649 140 EKNPFELSGGQMRRVAIAGILA----MEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFV 215 (280)
T ss_pred hCCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEE
Confidence 4568899999999999999998 5789999999999999999999999998764 368999999998865 679988
Q ss_pred eee
Q 001073 1142 FRT 1144 (1163)
Q Consensus 1142 ~gv 1144 (1163)
+-+
T Consensus 216 ~~l 218 (280)
T PRK13649 216 YVL 218 (280)
T ss_pred EEE
Confidence 653
No 233
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=1.7e-10 Score=125.02 Aligned_cols=80 Identities=23% Similarity=0.259 Sum_probs=69.6
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcch-hhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGM-FNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~-~~~a~~~~ 1142 (1163)
...+..|||||+++++||.+|+ .+|+++|||||+++||+.....+.++|.....+.++|++||++.. ...||+++
T Consensus 144 ~~~~~~LS~G~~qrv~laral~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~ 219 (253)
T PRK14267 144 NDYPSNLSGGQRQRLVIARALA----MKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVA 219 (253)
T ss_pred ccChhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEE
Confidence 3568899999999999999997 588999999999999999999999999887666899999999886 56799885
Q ss_pred eeeeeCC
Q 001073 1143 RTKFVDG 1149 (1163)
Q Consensus 1143 gv~~~~g 1149 (1163)
- +.+|
T Consensus 220 ~--l~~G 224 (253)
T PRK14267 220 F--LYLG 224 (253)
T ss_pred E--EECC
Confidence 4 4455
No 234
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.10 E-value=1.6e-10 Score=129.67 Aligned_cols=82 Identities=22% Similarity=0.203 Sum_probs=70.4
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcch-hhhcc
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGM-FNNAN 1139 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~-~~~a~ 1139 (1163)
....+..|||||+++++||++|+ .+|+++|||||+++||+..+..+.++|.++.. +.++|+|||+.+. +.+||
T Consensus 158 ~~~~~~~LSgGq~QRV~LARALa----~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~D 233 (382)
T TIGR03415 158 ADKKPGELSGGMQQRVGLARAFA----MDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGN 233 (382)
T ss_pred hcCChhhCCHHHHHHHHHHHHHh----cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 35678899999999999999998 68899999999999999999999999887643 7899999999876 68899
Q ss_pred ceeeeeeeCCc
Q 001073 1140 VLFRTKFVDGV 1150 (1163)
Q Consensus 1140 ~~~gv~~~~g~ 1150 (1163)
+++- |.+|.
T Consensus 234 rI~v--l~~G~ 242 (382)
T TIGR03415 234 RIAI--MEGGR 242 (382)
T ss_pred EEEE--EECCE
Confidence 8854 45553
No 235
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.10 E-value=1.7e-10 Score=125.07 Aligned_cols=76 Identities=21% Similarity=0.283 Sum_probs=67.2
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhh-hcccee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFN-NANVLF 1142 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~-~a~~~~ 1142 (1163)
..+..|||||+++++||++|+ .+|+++||||||++||+.++..+.++|.++. .+.++|+|||++..+. +||+++
T Consensus 148 ~~~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~ 223 (257)
T PRK10619 148 KYPVHLSGGQQQRVSIARALA----MEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVI 223 (257)
T ss_pred CCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 467899999999999999998 5889999999999999999999999998864 4789999999988765 699885
Q ss_pred ee
Q 001073 1143 RT 1144 (1163)
Q Consensus 1143 gv 1144 (1163)
-+
T Consensus 224 ~l 225 (257)
T PRK10619 224 FL 225 (257)
T ss_pred EE
Confidence 53
No 236
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.10 E-value=1.5e-10 Score=130.33 Aligned_cols=86 Identities=20% Similarity=0.287 Sum_probs=71.4
Q ss_pred ccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcc-hh
Q 001073 1059 FGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEG-MF 1135 (1163)
Q Consensus 1059 ~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~-~~ 1135 (1163)
..+...+.+..|||||+|+++||++|+ ..|++++||||+++||+..+..+...|.... .+.++|+|||+.. .+
T Consensus 134 l~~~~~~~p~~LSgGq~QRVaLARaL~----~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~ 209 (375)
T PRK09452 134 LEEFAQRKPHQLSGGQQQRVAIARAVV----NKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEAL 209 (375)
T ss_pred CchhhhCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 333445678999999999999999998 5779999999999999999999999998754 3789999999976 57
Q ss_pred hhccceeeeeeeCCc
Q 001073 1136 NNANVLFRTKFVDGV 1150 (1163)
Q Consensus 1136 ~~a~~~~gv~~~~g~ 1150 (1163)
..||+++- |.+|.
T Consensus 210 ~laDri~v--l~~G~ 222 (375)
T PRK09452 210 TMSDRIVV--MRDGR 222 (375)
T ss_pred HhCCEEEE--EECCE
Confidence 88999853 44443
No 237
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.10 E-value=1.3e-10 Score=123.85 Aligned_cols=77 Identities=25% Similarity=0.321 Sum_probs=67.4
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcchhh-hccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGMFN-NANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~~~-~a~~ 1140 (1163)
...+..|||||+++++||++|+ .+|++++||||+++||+.++..+.++|.+... +.++|++||+...+. .||+
T Consensus 126 ~~~~~~LS~G~~qrv~la~al~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 201 (230)
T TIGR03410 126 GRRGGDLSGGQQQQLAIARALV----TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADR 201 (230)
T ss_pred hCChhhCCHHHHHHHHHHHHHh----cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCE
Confidence 3568899999999999999997 68899999999999999999999999987643 689999999998765 6998
Q ss_pred eeee
Q 001073 1141 LFRT 1144 (1163)
Q Consensus 1141 ~~gv 1144 (1163)
++-.
T Consensus 202 v~~l 205 (230)
T TIGR03410 202 YYVM 205 (230)
T ss_pred EEEE
Confidence 8543
No 238
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.10 E-value=1.5e-10 Score=125.24 Aligned_cols=81 Identities=25% Similarity=0.334 Sum_probs=69.4
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcchh-hhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~~-~~a~~ 1140 (1163)
...+..|||||+++++||++|+ .+|+++|||||+++||+.++..+.++|.+..+ +.++|+|||+...+ ..||+
T Consensus 141 ~~~~~~LS~G~~qrv~laral~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~ 216 (252)
T TIGR03005 141 DHMPAQLSGGQQQRVAIARALA----MRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADR 216 (252)
T ss_pred hcChhhcCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCE
Confidence 3567899999999999999997 68899999999999999999999999987643 68999999998865 67998
Q ss_pred eeeeeeeCCc
Q 001073 1141 LFRTKFVDGV 1150 (1163)
Q Consensus 1141 ~~gv~~~~g~ 1150 (1163)
++- |.+|.
T Consensus 217 i~~--l~~G~ 224 (252)
T TIGR03005 217 VCF--FDKGR 224 (252)
T ss_pred EEE--EECCE
Confidence 864 45554
No 239
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.10 E-value=1.6e-10 Score=125.20 Aligned_cols=80 Identities=19% Similarity=0.257 Sum_probs=69.5
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
...+..|||||+++++||.+|+ .+|+++|||||+++||+.++..+.++|.+.. .+.++|++||++..+ ..||++
T Consensus 132 ~~~~~~LS~G~~qrl~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i 207 (256)
T TIGR03873 132 DRDMSTLSGGERQRVHVARALA----QEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHV 207 (256)
T ss_pred cCCcccCCHHHHHHHHHHHHHh----cCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 4568899999999999999998 5779999999999999999999999998764 367899999999876 689988
Q ss_pred eeeeeeCC
Q 001073 1142 FRTKFVDG 1149 (1163)
Q Consensus 1142 ~gv~~~~g 1149 (1163)
+-+ .+|
T Consensus 208 ~~l--~~G 213 (256)
T TIGR03873 208 VVL--DGG 213 (256)
T ss_pred EEE--eCC
Confidence 654 454
No 240
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=1.5e-10 Score=130.86 Aligned_cols=81 Identities=20% Similarity=0.208 Sum_probs=69.3
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcch-hhhcc
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGM-FNNAN 1139 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~-~~~a~ 1139 (1163)
..+.+..|||||+++++||++|+ .+||++|||||+++||+.++..+.++|.+.. .+.++|++||+.+. ..+||
T Consensus 158 ~~~~~~~LSgGq~QRv~LArAL~----~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~D 233 (400)
T PRK10070 158 AHSYPDELSGGMRQRVGLARALA----INPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGD 233 (400)
T ss_pred hhcCcccCCHHHHHHHHHHHHHh----cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCC
Confidence 34678899999999999999998 5889999999999999999999999998763 36799999999875 56799
Q ss_pred ceeeeeeeCC
Q 001073 1140 VLFRTKFVDG 1149 (1163)
Q Consensus 1140 ~~~gv~~~~g 1149 (1163)
+++- |.+|
T Consensus 234 ri~v--L~~G 241 (400)
T PRK10070 234 RIAI--MQNG 241 (400)
T ss_pred EEEE--EECC
Confidence 8864 4455
No 241
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=1.6e-10 Score=125.94 Aligned_cols=80 Identities=26% Similarity=0.332 Sum_probs=69.3
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcch-hhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGM-FNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~-~~~a~~~~ 1142 (1163)
...+..|||||+++++||++|+ .+|+++||||||+|||+..+..+.++|.....+.++|++||++.. ...||+++
T Consensus 159 ~~~~~~LSgGq~qrl~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~ 234 (268)
T PRK14248 159 HSSALSLSGGQQQRLCIARTLA----MKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTA 234 (268)
T ss_pred hcCcccCCHHHHHHHHHHHHHh----CCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEE
Confidence 3568899999999999999998 578999999999999999999999999887656899999999874 56799885
Q ss_pred eeeeeCC
Q 001073 1143 RTKFVDG 1149 (1163)
Q Consensus 1143 gv~~~~g 1149 (1163)
- |.+|
T Consensus 235 ~--l~~G 239 (268)
T PRK14248 235 F--FLNG 239 (268)
T ss_pred E--EECC
Confidence 4 3455
No 242
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.10 E-value=1.3e-10 Score=142.19 Aligned_cols=73 Identities=29% Similarity=0.387 Sum_probs=68.4
Q ss_pred cccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeee
Q 001073 1068 SELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1068 ~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
..||||||||++||++|+ .+||+++|||||++||+.+...+.+.|....++.++|+|||++.++..||+++-+
T Consensus 468 ~~LSgGqrQRiaLARall----~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l 540 (571)
T TIGR02203 468 VLLSGGQRQRLAIARALL----KDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVM 540 (571)
T ss_pred CcCCHHHHHHHHHHHHHh----cCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEE
Confidence 579999999999999997 7889999999999999999999999999887889999999999999999999764
No 243
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.10 E-value=1.3e-10 Score=122.82 Aligned_cols=76 Identities=21% Similarity=0.326 Sum_probs=67.5
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchhhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMFNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~~~a~~~ 1141 (1163)
...+..|||||+++++||++|+ .+||+++||||+++||+..+..+..+|.... .+..+|+|||+++.+..||++
T Consensus 136 ~~~~~~lS~G~~qrv~laral~----~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v 211 (220)
T TIGR02982 136 DYYPHNLSGGQKQRVAIARALV----HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRI 211 (220)
T ss_pred hcChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEE
Confidence 3567899999999999999987 5789999999999999999999999998764 378999999999988899987
Q ss_pred ee
Q 001073 1142 FR 1143 (1163)
Q Consensus 1142 ~g 1143 (1163)
+-
T Consensus 212 ~~ 213 (220)
T TIGR02982 212 VH 213 (220)
T ss_pred EE
Confidence 54
No 244
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=1.7e-10 Score=125.78 Aligned_cols=78 Identities=22% Similarity=0.201 Sum_probs=68.8
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcch-hhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGM-FNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~-~~~a~~~~ 1142 (1163)
..++..|||||+++++||++|+ .+|+++|||||+++||+..+..+.++|.+...+..+|++||+... ..+||+++
T Consensus 156 ~~~~~~LSgGq~qrv~LAraL~----~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~ 231 (274)
T PRK14265 156 KEKGTALSGGQQQRLCIARAIA----MKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTA 231 (274)
T ss_pred cCCcccCCHHHHHHHHHHHHHh----hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 3567899999999999999997 588999999999999999999999999887667899999999875 57899987
Q ss_pred eee
Q 001073 1143 RTK 1145 (1163)
Q Consensus 1143 gv~ 1145 (1163)
-+.
T Consensus 232 ~l~ 234 (274)
T PRK14265 232 FFN 234 (274)
T ss_pred EEe
Confidence 653
No 245
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=1.8e-10 Score=124.72 Aligned_cols=76 Identities=24% Similarity=0.246 Sum_probs=67.6
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~~ 1142 (1163)
...+..|||||+++++||++|+ .+|++++||||+++||+.+...+.++|.+...+.++|+|||+...+ .+||+++
T Consensus 143 ~~~~~~LS~Gq~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~ 218 (252)
T PRK14255 143 HESALSLSGGQQQRVCIARVLA----VKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTA 218 (252)
T ss_pred hcCcccCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEE
Confidence 4568899999999999999998 6889999999999999999999999998876568999999999875 6799885
Q ss_pred e
Q 001073 1143 R 1143 (1163)
Q Consensus 1143 g 1143 (1163)
-
T Consensus 219 ~ 219 (252)
T PRK14255 219 F 219 (252)
T ss_pred E
Confidence 4
No 246
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.10 E-value=1.3e-10 Score=129.49 Aligned_cols=76 Identities=24% Similarity=0.257 Sum_probs=66.6
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~-~~~a~~ 1140 (1163)
.+.+..||||||++++||++|+ .+|+++|||||+++||+..+..+.++|.+.. .+.++|+|||+... +..||+
T Consensus 95 ~~~~~~LSgGq~qRvalaraL~----~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~ 170 (325)
T TIGR01187 95 DRKPHQLSGGQQQRVALARALV----FKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDR 170 (325)
T ss_pred cCChhhCCHHHHHHHHHHHHHH----hCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 4567899999999999999998 5789999999999999999999999998753 36899999999864 677998
Q ss_pred eee
Q 001073 1141 LFR 1143 (1163)
Q Consensus 1141 ~~g 1143 (1163)
++-
T Consensus 171 i~v 173 (325)
T TIGR01187 171 IAI 173 (325)
T ss_pred EEE
Confidence 854
No 247
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=1.4e-10 Score=129.67 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=69.1
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcchh-hhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~~-~~a~~ 1140 (1163)
...+..|||||+|+++||.+|+ .+|+++|+||||++||+.....+.++|.++.. +..+|+|||+.... .+||+
T Consensus 153 ~~~p~~LSgG~~QRv~iArAL~----~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dr 228 (330)
T PRK15093 153 RSFPYELTEGECQKVMIAIALA----NQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADK 228 (330)
T ss_pred hCCchhCCHHHHHHHHHHHHHH----CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCE
Confidence 3568899999999999999998 57799999999999999999999999988643 68999999998876 67998
Q ss_pred eeeeeeeCC
Q 001073 1141 LFRTKFVDG 1149 (1163)
Q Consensus 1141 ~~gv~~~~g 1149 (1163)
++- |.+|
T Consensus 229 i~v--m~~G 235 (330)
T PRK15093 229 INV--LYCG 235 (330)
T ss_pred EEE--EECC
Confidence 843 4455
No 248
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.10 E-value=2.3e-10 Score=105.08 Aligned_cols=89 Identities=22% Similarity=0.219 Sum_probs=70.0
Q ss_pred hhhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC-CCeEEEEEeCcch
Q 001073 1056 CVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP-HSQFIVVSLKEGM 1134 (1163)
Q Consensus 1056 ~~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~-~~q~i~it~~~~~ 1134 (1163)
+++.....++-|-.|||||++|+|||++|- ..|.+++||||||+|||.-...+..+|++++. +-+-+|+||.-+.
T Consensus 128 rlrl~~~adr~plhlsggqqqrvaiaralm----mkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~v 203 (242)
T COG4161 128 RLRLKPYADRYPLHLSGGQQQRVAIARALM----MEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV 203 (242)
T ss_pred HhccccccccCceecccchhhhHHHHHHHh----cCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhH
Confidence 444455556778899999999999999885 46799999999999999999999999999865 5556788997665
Q ss_pred hh-hccceeeeeeeCCc
Q 001073 1135 FN-NANVLFRTKFVDGV 1150 (1163)
Q Consensus 1135 ~~-~a~~~~gv~~~~g~ 1150 (1163)
-. .|.+. |+|++|.
T Consensus 204 a~k~as~v--vyme~g~ 218 (242)
T COG4161 204 ARKTASRV--VYMENGH 218 (242)
T ss_pred HHhhhhhe--EeeecCe
Confidence 33 34444 5677773
No 249
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.10 E-value=1.4e-10 Score=126.27 Aligned_cols=76 Identities=22% Similarity=0.236 Sum_probs=66.7
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchhh-hccce
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMFN-NANVL 1141 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~~-~a~~~ 1141 (1163)
..+..|||||+++++||++|+ .+|+++|||||+++||+.++..+.++|.+.. .+..+|++||+...+. +||++
T Consensus 145 ~~~~~LS~G~~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i 220 (267)
T PRK15112 145 YYPHMLAPGQKQRLGLARALI----LRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQV 220 (267)
T ss_pred cCchhcCHHHHHHHHHHHHHH----hCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEE
Confidence 457899999999999999998 5789999999999999999999999998864 3689999999998765 59988
Q ss_pred eee
Q 001073 1142 FRT 1144 (1163)
Q Consensus 1142 ~gv 1144 (1163)
+-+
T Consensus 221 ~~l 223 (267)
T PRK15112 221 LVM 223 (267)
T ss_pred EEE
Confidence 654
No 250
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.09 E-value=1.8e-10 Score=119.54 Aligned_cols=86 Identities=20% Similarity=0.306 Sum_probs=72.5
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--C-CeEEEEEeCc-chhhhcc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--H-SQFIVVSLKE-GMFNNAN 1139 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~-~q~i~it~~~-~~~~~a~ 1139 (1163)
..++..||||||+++.++.+||++.+.+||++++|||+++||+.+...+.++|..... + +++|+|||+. ..+..||
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~ 200 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHE 200 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccC
Confidence 4578899999999999999999888889999999999999999999999999987643 3 5899999986 5667888
Q ss_pred ceeeeeeeCC
Q 001073 1140 VLFRTKFVDG 1149 (1163)
Q Consensus 1140 ~~~gv~~~~g 1149 (1163)
+++-+.+.+|
T Consensus 201 ~~~v~~l~~g 210 (213)
T cd03277 201 KMTVLCVYNG 210 (213)
T ss_pred ceEEEEEecC
Confidence 8755555555
No 251
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=1.7e-10 Score=128.27 Aligned_cols=79 Identities=24% Similarity=0.291 Sum_probs=69.5
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhh-hccceee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFN-NANVLFR 1143 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~-~a~~~~g 1143 (1163)
..+..||||||++++||++|+ .+|++++||||+++||+.....+.++|..+.++.++|+|||++..+. +||+++
T Consensus 221 ~~~~~LSgGqkqRl~LARAl~----~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Drii- 295 (329)
T PRK14257 221 KAGNALSGGQQQRLCIARAIA----LEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETV- 295 (329)
T ss_pred CCcccCCHHHHHHHHHHHHHH----hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE-
Confidence 457899999999999999997 68899999999999999999999999988777889999999999755 599984
Q ss_pred eeeeCC
Q 001073 1144 TKFVDG 1149 (1163)
Q Consensus 1144 v~~~~g 1149 (1163)
.|.+|
T Consensus 296 -vl~~G 300 (329)
T PRK14257 296 -FFYQG 300 (329)
T ss_pred -EEECC
Confidence 35565
No 252
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=2e-10 Score=126.14 Aligned_cols=77 Identities=25% Similarity=0.250 Sum_probs=68.1
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcch-hhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGM-FNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~-~~~a~~~ 1141 (1163)
.+++..||||||++++||.+|+ .+|+++|||||++|||+.++..+..+|.++. .+.++|++||+.+. ...||++
T Consensus 140 ~~~~~~LSgGq~qrl~laral~----~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v 215 (287)
T PRK13641 140 SKSPFELSGGQMRRVAIAGVMA----YEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDV 215 (287)
T ss_pred hCCcccCCHHHHHHHHHHHHHH----cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 4578899999999999999998 5779999999999999999999999998864 47899999999886 5679998
Q ss_pred eee
Q 001073 1142 FRT 1144 (1163)
Q Consensus 1142 ~gv 1144 (1163)
+-+
T Consensus 216 ~~l 218 (287)
T PRK13641 216 LVL 218 (287)
T ss_pred EEE
Confidence 654
No 253
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.09 E-value=1.4e-10 Score=129.08 Aligned_cols=79 Identities=22% Similarity=0.320 Sum_probs=68.3
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcchh-hhccce
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
..+..|||||+|+++||.+|+ ..|+++|+||||++||+..+..+.++|.++.. +..+|+|||+...+ ..||++
T Consensus 157 ~~p~~LSgG~~QRv~IArAL~----~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 157 MYPHEFSGGMRQRVMIAMALL----CRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred CCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEE
Confidence 468899999999999999998 47799999999999999999999999987643 78999999998876 479998
Q ss_pred eeeeeeCC
Q 001073 1142 FRTKFVDG 1149 (1163)
Q Consensus 1142 ~gv~~~~g 1149 (1163)
+- |.+|
T Consensus 233 ~v--m~~G 238 (330)
T PRK09473 233 LV--MYAG 238 (330)
T ss_pred EE--EECC
Confidence 54 4444
No 254
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=1.8e-10 Score=124.81 Aligned_cols=80 Identities=25% Similarity=0.316 Sum_probs=69.3
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhh-hcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFN-NANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~-~a~~~~ 1142 (1163)
..++..|||||+++++||.+|+ .+||++|||||+++||+.++..+..+|.....+.++|++||+...+. .||+++
T Consensus 143 ~~~~~~LS~G~~qrv~laral~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~ 218 (252)
T PRK14272 143 KTPATGLSGGQQQRLCIARALA----VEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTS 218 (252)
T ss_pred cCCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEE
Confidence 3568899999999999999998 57899999999999999999999999988766789999999988654 699885
Q ss_pred eeeeeCC
Q 001073 1143 RTKFVDG 1149 (1163)
Q Consensus 1143 gv~~~~g 1149 (1163)
- |.+|
T Consensus 219 ~--l~~G 223 (252)
T PRK14272 219 F--FLVG 223 (252)
T ss_pred E--EECC
Confidence 4 4454
No 255
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.09 E-value=2.2e-10 Score=123.85 Aligned_cols=77 Identities=25% Similarity=0.245 Sum_probs=67.9
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcch-hhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGM-FNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~-~~~a~~~~ 1142 (1163)
..++..|||||+++++||++|+ .+|++++||||+++||+.++..+.++|.....+.++|++||+... ...||+++
T Consensus 141 ~~~~~~LS~G~~qrv~laral~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~ 216 (250)
T PRK14240 141 KKSALGLSGGQQQRLCIARALA----VEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTA 216 (250)
T ss_pred hcCCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEE
Confidence 3568899999999999999998 588999999999999999999999999887667899999999885 56799885
Q ss_pred ee
Q 001073 1143 RT 1144 (1163)
Q Consensus 1143 gv 1144 (1163)
-+
T Consensus 217 ~l 218 (250)
T PRK14240 217 FF 218 (250)
T ss_pred EE
Confidence 53
No 256
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=1.7e-10 Score=126.34 Aligned_cols=80 Identities=28% Similarity=0.346 Sum_probs=70.0
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchhhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMFNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~~~a~~~ 1141 (1163)
...+..|||||+++++||.+|+ .+|+++|||||++|||+.++..+..+|.... .+.++|++||+...+..||++
T Consensus 138 ~~~~~~LS~G~~qrv~laral~----~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i 213 (282)
T PRK13640 138 DSEPANLSGGQKQRVAIAGILA----VEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQV 213 (282)
T ss_pred cCCcccCCHHHHHHHHHHHHHH----cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEE
Confidence 4568899999999999999998 5889999999999999999999999998764 378999999999888889988
Q ss_pred eeeeeeCC
Q 001073 1142 FRTKFVDG 1149 (1163)
Q Consensus 1142 ~gv~~~~g 1149 (1163)
+- |.+|
T Consensus 214 ~~--l~~G 219 (282)
T PRK13640 214 LV--LDDG 219 (282)
T ss_pred EE--EECC
Confidence 54 3454
No 257
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=1.4e-10 Score=125.52 Aligned_cols=82 Identities=26% Similarity=0.383 Sum_probs=69.9
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcch-hhhccc
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~-~~~a~~ 1140 (1163)
....+..|||||+++++||++|+ .+||+++||||++|||+.++..+.++|.+.. .+.++|++||++.. ..+||+
T Consensus 132 ~~~~~~~LS~G~~qrv~laral~----~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~ 207 (255)
T PRK11231 132 ADRRLTDLSGGQRQRAFLAMVLA----QDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDH 207 (255)
T ss_pred HcCCcccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCE
Confidence 34678999999999999999998 5779999999999999999999999998764 47899999999886 568998
Q ss_pred eeeeeeeCCc
Q 001073 1141 LFRTKFVDGV 1150 (1163)
Q Consensus 1141 ~~gv~~~~g~ 1150 (1163)
++-+ .+|.
T Consensus 208 i~~l--~~G~ 215 (255)
T PRK11231 208 LVVL--ANGH 215 (255)
T ss_pred EEEE--ECCe
Confidence 8653 3543
No 258
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=1.6e-10 Score=125.35 Aligned_cols=78 Identities=14% Similarity=0.253 Sum_probs=68.0
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-C-CCeEEEEEeCcchh-hhcc
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-P-HSQFIVVSLKEGMF-NNAN 1139 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~-~~q~i~it~~~~~~-~~a~ 1139 (1163)
...++..|||||+++++||.+|+ .+|++++||||++|||+.++..+.++|.... . +.++|++||+...+ ..||
T Consensus 147 ~~~~~~~LS~G~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d 222 (255)
T PRK11300 147 ANRQAGNLAYGQQRRLEIARCMV----TQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISD 222 (255)
T ss_pred hhCChhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCC
Confidence 34678899999999999999987 6789999999999999999999999998763 3 68999999998875 6799
Q ss_pred ceeee
Q 001073 1140 VLFRT 1144 (1163)
Q Consensus 1140 ~~~gv 1144 (1163)
+++-+
T Consensus 223 ~i~~l 227 (255)
T PRK11300 223 RIYVV 227 (255)
T ss_pred EEEEE
Confidence 88654
No 259
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.09 E-value=1.5e-10 Score=125.85 Aligned_cols=77 Identities=21% Similarity=0.232 Sum_probs=68.3
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~-~~~a~~ 1140 (1163)
.+.+..|||||+++++||++|+ .+|++++|||||++||+.....+.++|.+.. .+.++|++||++.. ...||+
T Consensus 147 ~~~~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~ 222 (262)
T PRK09984 147 HQRVSTLSGGQQQRVAIARALM----QQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCER 222 (262)
T ss_pred hCCccccCHHHHHHHHHHHHHh----cCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 4578899999999999999998 5779999999999999999999999998864 36899999999985 788998
Q ss_pred eeee
Q 001073 1141 LFRT 1144 (1163)
Q Consensus 1141 ~~gv 1144 (1163)
++-+
T Consensus 223 i~~l 226 (262)
T PRK09984 223 IVAL 226 (262)
T ss_pred EEEE
Confidence 8654
No 260
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.09 E-value=1.8e-10 Score=140.30 Aligned_cols=88 Identities=27% Similarity=0.390 Sum_probs=76.0
Q ss_pred cccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeee
Q 001073 1066 SLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTK 1145 (1163)
Q Consensus 1066 ~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~ 1145 (1163)
....||||||||+|||++|. .+||+++|||||++||+.++..+.+.+....++.+.|+|+||+.++..||+++-
T Consensus 462 ~G~~LSgGQrQrlaiARall----~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiV-- 535 (567)
T COG1132 462 RGVNLSGGQRQRLAIARALL----RNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIV-- 535 (567)
T ss_pred CCccCCHHHHHHHHHHHHHh----cCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEE--
Confidence 34589999999999999986 788999999999999999999999999877777788999999999999999965
Q ss_pred eeCCceEEEEeeccc
Q 001073 1146 FVDGVSTVQRTVATK 1160 (1163)
Q Consensus 1146 ~~~g~S~v~~~~~~~ 1160 (1163)
|.+|. -+...+|.+
T Consensus 536 l~~G~-i~e~G~h~e 549 (567)
T COG1132 536 LDNGR-IVERGTHEE 549 (567)
T ss_pred EECCE-EEEecCHHH
Confidence 56777 555666644
No 261
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.09 E-value=1.7e-10 Score=119.26 Aligned_cols=74 Identities=22% Similarity=0.355 Sum_probs=65.9
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhh-CCCCeEEEEEeCcchhhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH-FPHSQFIVVSLKEGMFNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~-~~~~q~i~it~~~~~~~~a~~~ 1141 (1163)
.+.+..|||||+++++||++++ .+|++++||||+++||+..+..+..+|... ..+..+|++||+...+..||.+
T Consensus 118 ~~~~~~LS~G~~~rl~la~al~----~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 118 DEKCYSLSSGMQKIVAIARLIA----CQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred ccChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 3567899999999999999998 688999999999999999999999998753 4578999999999999999865
No 262
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.09 E-value=1.5e-10 Score=125.48 Aligned_cols=80 Identities=21% Similarity=0.270 Sum_probs=68.7
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchhh-hccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMFN-NANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~~-~a~~ 1140 (1163)
...+..|||||+++++||++|+ .+|++++||||+++||+.++..+.++|.+.. .+..+|++||+...+. .||+
T Consensus 143 ~~~~~~LSgG~~qrv~laral~----~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~ 218 (253)
T TIGR02323 143 DDLPRAFSGGMQQRLQIARNLV----TRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQR 218 (253)
T ss_pred hcCchhcCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence 3568899999999999999997 6889999999999999999999999998753 3789999999988765 6998
Q ss_pred eeeeeeeCC
Q 001073 1141 LFRTKFVDG 1149 (1163)
Q Consensus 1141 ~~gv~~~~g 1149 (1163)
++- |.+|
T Consensus 219 ~~~--l~~G 225 (253)
T TIGR02323 219 LLV--MQQG 225 (253)
T ss_pred EEE--EECC
Confidence 754 4454
No 263
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=1.6e-10 Score=127.36 Aligned_cols=80 Identities=26% Similarity=0.321 Sum_probs=68.6
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~-~~~a~~ 1140 (1163)
.+.+..|||||+++++||++|+ .+|+++|||||++|||+.++..+.++|.+.. .+.++|+|||+... ..+||+
T Consensus 145 ~~~~~~LS~Gq~qrv~laral~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~ 220 (289)
T PRK13645 145 KRSPFELSGGQKRRVALAGIIA----MDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADE 220 (289)
T ss_pred cCChhhCCHHHHHHHHHHHHHH----hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 4568899999999999999998 5779999999999999999999999998764 36899999999875 567998
Q ss_pred eeeeeeeCC
Q 001073 1141 LFRTKFVDG 1149 (1163)
Q Consensus 1141 ~~gv~~~~g 1149 (1163)
++- |.+|
T Consensus 221 i~~--l~~G 227 (289)
T PRK13645 221 VIV--MHEG 227 (289)
T ss_pred EEE--EECC
Confidence 865 3455
No 264
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=1.9e-10 Score=123.26 Aligned_cols=80 Identities=21% Similarity=0.246 Sum_probs=68.5
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~-~~~a~~ 1140 (1163)
.+.+..|||||+++++||++|+ .+|+++|||||+++||+.++..+.++|.... .+.++|++||+... ...||+
T Consensus 126 ~~~~~~LS~G~~qrl~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~ 201 (241)
T PRK14250 126 TRDVKNLSGGEAQRVSIARTLA----NNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDY 201 (241)
T ss_pred hCCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCE
Confidence 3568899999999999999997 5889999999999999999999999998764 37899999999886 457999
Q ss_pred eeeeeeeCC
Q 001073 1141 LFRTKFVDG 1149 (1163)
Q Consensus 1141 ~~gv~~~~g 1149 (1163)
++- |.+|
T Consensus 202 i~~--l~~G 208 (241)
T PRK14250 202 TAF--LNKG 208 (241)
T ss_pred EEE--EeCC
Confidence 864 3454
No 265
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.09 E-value=1.5e-10 Score=130.49 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=66.5
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcc-hhhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEG-MFNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~-~~~~a~~ 1140 (1163)
.+.+..||||||++++||++|+ .+|++++||||+++||+..+..+.++|.+... +..+|+|||+.. .+..||+
T Consensus 123 ~~~~~~LSgGq~qRvalaraL~----~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~ 198 (352)
T PRK11144 123 DRYPGSLSGGEKQRVAIGRALL----TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADR 198 (352)
T ss_pred hCCcccCCHHHHHHHHHHHHHH----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCE
Confidence 4568899999999999999998 57899999999999999999999999987643 678999999986 5677998
Q ss_pred eee
Q 001073 1141 LFR 1143 (1163)
Q Consensus 1141 ~~g 1143 (1163)
++-
T Consensus 199 i~~ 201 (352)
T PRK11144 199 VVV 201 (352)
T ss_pred EEE
Confidence 754
No 266
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.09 E-value=1.8e-10 Score=124.22 Aligned_cols=75 Identities=21% Similarity=0.380 Sum_probs=65.3
Q ss_pred cccc-ccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhh--ccc
Q 001073 1065 QSLS-ELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNN--ANV 1140 (1163)
Q Consensus 1065 ~~~~-~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~--a~~ 1140 (1163)
..+. .||||||++++||.+|+ .+|+++||||||++||+.++..+.++|.+.. .+.++|+|||+...+.. ||+
T Consensus 139 ~~~~~~LS~G~~qrl~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~ 214 (243)
T TIGR01978 139 RSVNEGFSGGEKKRNEILQMAL----LEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDY 214 (243)
T ss_pred cccccCcCHHHHHHHHHHHHHh----cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCe
Confidence 4455 59999999999999997 6889999999999999999999999998864 46899999999987754 798
Q ss_pred eee
Q 001073 1141 LFR 1143 (1163)
Q Consensus 1141 ~~g 1143 (1163)
++-
T Consensus 215 i~~ 217 (243)
T TIGR01978 215 VHV 217 (243)
T ss_pred EEE
Confidence 864
No 267
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=1.9e-10 Score=127.38 Aligned_cols=76 Identities=24% Similarity=0.349 Sum_probs=70.9
Q ss_pred cccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeee
Q 001073 1066 SLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTK 1145 (1163)
Q Consensus 1066 ~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~ 1145 (1163)
....|||||||+++||++|- +.||+++|||||++||...++.+.++|.....+.++|+|.||..|...+|.++.+.
T Consensus 484 rG~~LSGGekQrvslaRa~l----Kda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~ 559 (591)
T KOG0057|consen 484 RGLMLSGGEKQRVSLARAFL----KDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLD 559 (591)
T ss_pred cccccccchHHHHHHHHHHh----cCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEE
Confidence 45689999999999999985 89999999999999999999999999988888999999999999999999998854
No 268
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.09 E-value=2e-10 Score=124.32 Aligned_cols=85 Identities=27% Similarity=0.341 Sum_probs=69.0
Q ss_pred ccccccccChHHHHHHHHHHHHHHhc--cCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchh-hh
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLL--FKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMF-NN 1137 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~--~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~-~~ 1137 (1163)
....+..|||||+++++||.+|+... -.+|++++|||||++||+.++..+.++|.+.. .+..+|++||+...+ ..
T Consensus 128 ~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~ 207 (258)
T PRK13548 128 AGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARY 207 (258)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence 34578999999999999999887200 02679999999999999999999999998764 468999999998765 47
Q ss_pred ccceeeeeeeCC
Q 001073 1138 ANVLFRTKFVDG 1149 (1163)
Q Consensus 1138 a~~~~gv~~~~g 1149 (1163)
||+++-+ .+|
T Consensus 208 ~d~i~~l--~~G 217 (258)
T PRK13548 208 ADRIVLL--HQG 217 (258)
T ss_pred cCEEEEE--ECC
Confidence 9998653 455
No 269
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.09 E-value=1.9e-10 Score=125.28 Aligned_cols=80 Identities=23% Similarity=0.292 Sum_probs=69.5
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcch-hhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGM-FNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~-~~~a~~~~ 1142 (1163)
..++..|||||+++++||++|+ .+|+++|||||+++||+.+...+.++|.+...+.++|++||+... ..+||+++
T Consensus 162 ~~~~~~LSgGe~qrv~laraL~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~ 237 (271)
T PRK14238 162 HDNAYGLSGGQQQRLCIARCLA----IEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTA 237 (271)
T ss_pred hcCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEE
Confidence 3568899999999999999997 588999999999999999999999999887667899999999986 46799885
Q ss_pred eeeeeCC
Q 001073 1143 RTKFVDG 1149 (1163)
Q Consensus 1143 gv~~~~g 1149 (1163)
- +.+|
T Consensus 238 ~--l~~G 242 (271)
T PRK14238 238 F--FLNG 242 (271)
T ss_pred E--EECC
Confidence 4 3454
No 270
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=2.2e-10 Score=124.36 Aligned_cols=77 Identities=22% Similarity=0.237 Sum_probs=68.2
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcch-hhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGM-FNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~-~~~a~~~~ 1142 (1163)
...+..|||||+++++||.+|+ .+|++++|||||++||+.++..+.++|.+...+.++|+|||+... ...||+++
T Consensus 150 ~~~~~~LS~Gq~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~ 225 (259)
T PRK14274 150 HTQALSLSGGQQQRLCIARALA----TNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTA 225 (259)
T ss_pred hCCcccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEE
Confidence 3567899999999999999998 588999999999999999999999999887667899999999886 46799986
Q ss_pred ee
Q 001073 1143 RT 1144 (1163)
Q Consensus 1143 gv 1144 (1163)
-+
T Consensus 226 ~l 227 (259)
T PRK14274 226 FF 227 (259)
T ss_pred EE
Confidence 54
No 271
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.09 E-value=2.1e-10 Score=119.74 Aligned_cols=78 Identities=24% Similarity=0.276 Sum_probs=68.2
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhh-CCCCeEEEEEeCcchhhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH-FPHSQFIVVSLKEGMFNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~-~~~~q~i~it~~~~~~~~a~~~~ 1142 (1163)
..++..|||||+++++||.+|+ .+|+++|||||+++||+.....+.++|.+. ..+.++|++||+...+.. |+++
T Consensus 122 ~~~~~~LS~G~~qrl~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~ 196 (207)
T PRK13539 122 HLPFGYLSAGQKRRVALARLLV----SNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-AREL 196 (207)
T ss_pred cCChhhcCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEE
Confidence 3567899999999999999998 578999999999999999999999999875 457899999999988877 8887
Q ss_pred eeee
Q 001073 1143 RTKF 1146 (1163)
Q Consensus 1143 gv~~ 1146 (1163)
.+..
T Consensus 197 ~~~~ 200 (207)
T PRK13539 197 DLGP 200 (207)
T ss_pred eecC
Confidence 7643
No 272
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=1.5e-10 Score=133.19 Aligned_cols=73 Identities=23% Similarity=0.347 Sum_probs=67.6
Q ss_pred cccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhcccee
Q 001073 1066 SLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLF 1142 (1163)
Q Consensus 1066 ~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~ 1142 (1163)
.-.+||||||||+|||++|- .+|.++||||.|++||..++..+-+.|....++.++|+|.||..|++.||.+.
T Consensus 601 kG~qLSGGQKQRIAIARALl----r~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Iv 673 (716)
T KOG0058|consen 601 KGSQLSGGQKQRIAIARALL----RNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIV 673 (716)
T ss_pred ccccccchHHHHHHHHHHHh----cCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEE
Confidence 35699999999999999985 78899999999999999999999999988888899999999999999999874
No 273
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.08 E-value=2.2e-10 Score=123.85 Aligned_cols=76 Identities=21% Similarity=0.215 Sum_probs=67.6
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcch-hhhccceee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGM-FNNANVLFR 1143 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~-~~~a~~~~g 1143 (1163)
..+..|||||+++++||++|+ .+|++++||||+++||+..+..+.++|.+..++.++|++||+.+. ...||+++-
T Consensus 143 ~~~~~LS~G~~qrv~laral~----~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~ 218 (251)
T PRK14270 143 KSALKLSGGQQQRLCIARTIA----VKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAF 218 (251)
T ss_pred CCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEE
Confidence 468899999999999999998 578999999999999999999999999887656899999999876 567999865
Q ss_pred e
Q 001073 1144 T 1144 (1163)
Q Consensus 1144 v 1144 (1163)
+
T Consensus 219 l 219 (251)
T PRK14270 219 F 219 (251)
T ss_pred E
Confidence 4
No 274
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.08 E-value=2.3e-10 Score=123.69 Aligned_cols=76 Identities=26% Similarity=0.253 Sum_probs=67.4
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhccceee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVLFR 1143 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~~g 1143 (1163)
..+..|||||+++++||++|+ .+|+++||||||++||+.+...+.++|.+...+.++|+|||+...+ ..||+++-
T Consensus 145 ~~~~~LS~Gq~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~ 220 (251)
T PRK14244 145 DSAFELSGGQQQRLCIARAIA----VKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAF 220 (251)
T ss_pred cChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEE
Confidence 467899999999999999997 6889999999999999999999999998876678999999998875 57998865
Q ss_pred e
Q 001073 1144 T 1144 (1163)
Q Consensus 1144 v 1144 (1163)
+
T Consensus 221 l 221 (251)
T PRK14244 221 F 221 (251)
T ss_pred E
Confidence 3
No 275
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.08 E-value=1.7e-10 Score=117.71 Aligned_cols=70 Identities=23% Similarity=0.341 Sum_probs=62.0
Q ss_pred cChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccceee
Q 001073 1070 LSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANVLFR 1143 (1163)
Q Consensus 1070 lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~~~g 1143 (1163)
|||||+++++||++++ .+||+++||||+++||+.++..+.++|.... .+.++|++||+...+ ..||+++-
T Consensus 105 LS~G~~qrl~la~al~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~ 176 (182)
T cd03215 105 LSGGNQQKVVLARWLA----RDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILV 176 (182)
T ss_pred cCHHHHHHHHHHHHHc----cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 9999999999999987 5889999999999999999999999998764 468999999998654 56998865
No 276
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.08 E-value=8.4e-11 Score=109.15 Aligned_cols=82 Identities=18% Similarity=0.302 Sum_probs=72.4
Q ss_pred ccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhh-CCCCeEEEEEeCcchhh-hc
Q 001073 1061 GVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH-FPHSQFIVVSLKEGMFN-NA 1138 (1163)
Q Consensus 1061 ~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~-~~~~q~i~it~~~~~~~-~a 1138 (1163)
..|.-.|..+||||+|++.||+.|. ...|+++||||||.||..|+..+.++|.+. +.++-+|=|-|+.+.-+ .|
T Consensus 144 rLW~LaPaTFSGGEqQRVNIaRgfi----vd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~va 219 (235)
T COG4778 144 RLWSLAPATFSGGEQQRVNIARGFI----VDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVA 219 (235)
T ss_pred HHhcCCCcccCCchheehhhhhhhh----ccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHh
Confidence 4577789999999999999999997 578999999999999999999999999875 56888999999988754 49
Q ss_pred cceeeeee
Q 001073 1139 NVLFRTKF 1146 (1163)
Q Consensus 1139 ~~~~gv~~ 1146 (1163)
|+++-|+-
T Consensus 220 dR~~~~~~ 227 (235)
T COG4778 220 DRLLDVSA 227 (235)
T ss_pred hheeeccc
Confidence 99988775
No 277
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.08 E-value=1.7e-10 Score=109.93 Aligned_cols=92 Identities=23% Similarity=0.260 Sum_probs=73.6
Q ss_pred hhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhh--CCCCeEEEEEeCc-c
Q 001073 1057 VAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH--FPHSQFIVVSLKE-G 1133 (1163)
Q Consensus 1057 ~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~--~~~~q~i~it~~~-~ 1133 (1163)
|+..+...+.+.+||||+||++.||++|| ..|.|++||||.++||.-.+.++..+|.+. ..+.|+++|||.. +
T Consensus 120 VgL~~~~~~~i~qLSGGmrQRvGiARALa----~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieE 195 (259)
T COG4525 120 VGLEGAEHKYIWQLSGGMRQRVGIARALA----VEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEE 195 (259)
T ss_pred hCcccccccceEeecchHHHHHHHHHHhh----cCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH
Confidence 34444446789999999999999999999 577999999999999999999999988764 5689999999995 4
Q ss_pred hhhhccceeeeeeeCCceEEE
Q 001073 1134 MFNNANVLFRTKFVDGVSTVQ 1154 (1163)
Q Consensus 1134 ~~~~a~~~~gv~~~~g~S~v~ 1154 (1163)
-.-.|++|+= |.+|=-.|+
T Consensus 196 AlflatrLvv--lsp~pgRvv 214 (259)
T COG4525 196 ALFLATRLVV--LSPGPGRVV 214 (259)
T ss_pred HHhhhheeEE--ecCCCceee
Confidence 5667888854 444433444
No 278
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.08 E-value=1.6e-10 Score=130.99 Aligned_cols=83 Identities=23% Similarity=0.282 Sum_probs=70.0
Q ss_pred hhhcccccc--ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeC
Q 001073 1056 CVAFGGVWK--QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLK 1131 (1163)
Q Consensus 1056 ~~~~~~~~~--~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~ 1131 (1163)
.|+++.... +.|++||||||||+.||.++| ..|+++|+||||.+||+.-...|.++|+.+. .+..+|+|||+
T Consensus 139 ~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa----~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHD 214 (539)
T COG1123 139 QVGLPDPERRDRYPHQLSGGMRQRVMIAMALA----LKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHD 214 (539)
T ss_pred HcCCCChhhhccCCcccCchHHHHHHHHHHHh----CCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCC
Confidence 444443333 489999999999999999998 5779999999999999999999999999865 57889999999
Q ss_pred cchh-hhcccee
Q 001073 1132 EGMF-NNANVLF 1142 (1163)
Q Consensus 1132 ~~~~-~~a~~~~ 1142 (1163)
++++ +.||+++
T Consensus 215 l~Vva~~aDrv~ 226 (539)
T COG1123 215 LGVVAELADRVV 226 (539)
T ss_pred HHHHHHhcCeEE
Confidence 9975 4599873
No 279
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.08 E-value=2.5e-10 Score=113.58 Aligned_cols=72 Identities=26% Similarity=0.336 Sum_probs=63.2
Q ss_pred cChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC-CCeEEEEEeCcchhhh-ccceeeee
Q 001073 1070 LSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP-HSQFIVVSLKEGMFNN-ANVLFRTK 1145 (1163)
Q Consensus 1070 lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~-~~q~i~it~~~~~~~~-a~~~~gv~ 1145 (1163)
|||||+++++||++|+ .+||++|||||+++||+.++..+.++|..... +.++|++||+...... ||+++-+.
T Consensus 81 lS~G~~~r~~l~~~l~----~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~ 154 (157)
T cd00267 81 LSGGQRQRVALARALL----LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLK 154 (157)
T ss_pred CCHHHHHHHHHHHHHh----cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999999999999998 47899999999999999999999999987533 5799999999988766 59887653
No 280
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.08 E-value=2e-10 Score=125.33 Aligned_cols=75 Identities=20% Similarity=0.293 Sum_probs=66.0
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcch-hhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGM-FNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~-~~~a~~~ 1141 (1163)
.+.+..|||||+++++||++|+ .+||+++||||+++||+.++..+.++|.+.. .+.++|+|||+... ...||++
T Consensus 137 ~~~~~~LSgG~~qrv~laraL~----~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v 212 (272)
T PRK15056 137 HRQIGELSGGQKKRVFLARAIA----QQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYT 212 (272)
T ss_pred cCCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 4578899999999999999998 5789999999999999999999999998764 46789999999865 5779986
Q ss_pred e
Q 001073 1142 F 1142 (1163)
Q Consensus 1142 ~ 1142 (1163)
+
T Consensus 213 ~ 213 (272)
T PRK15056 213 V 213 (272)
T ss_pred E
Confidence 3
No 281
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.08 E-value=2.4e-10 Score=123.64 Aligned_cols=79 Identities=25% Similarity=0.287 Sum_probs=69.2
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhccceee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVLFR 1143 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~~g 1143 (1163)
..+..|||||+++++||.+|+ .+|++++||||++|||+.++..+..+|.+...+.++|++||+...+ .+||+++-
T Consensus 144 ~~~~~LS~G~~qrl~laral~----~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~ 219 (252)
T PRK14256 144 SNAMELSGGQQQRLCIARTIA----VKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAF 219 (252)
T ss_pred CCcCcCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEE
Confidence 467899999999999999997 5779999999999999999999999998876678999999998864 78999865
Q ss_pred eeeeCC
Q 001073 1144 TKFVDG 1149 (1163)
Q Consensus 1144 v~~~~g 1149 (1163)
|.+|
T Consensus 220 --l~~G 223 (252)
T PRK14256 220 --FYMG 223 (252)
T ss_pred --EECC
Confidence 3455
No 282
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.08 E-value=2.1e-10 Score=124.13 Aligned_cols=80 Identities=21% Similarity=0.261 Sum_probs=69.3
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcch-hhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGM-FNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~-~~~a~~~~ 1142 (1163)
...+..|||||+++++||++|+ .+|+++|||||+++||+.+...+..+|.+...+.++|+|||+.+. ..+||+++
T Consensus 142 ~~~~~~LS~Gq~qr~~laral~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~ 217 (251)
T PRK14251 142 DRNAQAFSGGQQQRICIARALA----VRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTA 217 (251)
T ss_pred ccChhhCCHHHHHHHHHHHHHh----cCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEE
Confidence 3567899999999999999997 588999999999999999999999999887667899999999986 56799886
Q ss_pred eeeeeCC
Q 001073 1143 RTKFVDG 1149 (1163)
Q Consensus 1143 gv~~~~g 1149 (1163)
- +.+|
T Consensus 218 ~--l~~G 222 (251)
T PRK14251 218 F--LMNG 222 (251)
T ss_pred E--EECC
Confidence 4 4455
No 283
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.08 E-value=1.4e-10 Score=131.57 Aligned_cols=75 Identities=31% Similarity=0.368 Sum_probs=66.9
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcchhhh-ccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGMFNN-ANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~~~~-a~~ 1140 (1163)
.+.+++||||||||+|||++||+ .|.++|+|||+++||+.....+.++|.++.. +..||+|||+...+.. ||+
T Consensus 424 ~ryP~elSGGQrQRvaIARALa~----~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~dr 499 (539)
T COG1123 424 DRYPHELSGGQRQRVAIARALAL----EPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADR 499 (539)
T ss_pred hcCchhcCcchhHHHHHHHHHhc----CCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCce
Confidence 46799999999999999999994 7799999999999999999999999988643 6899999999987554 998
Q ss_pred ee
Q 001073 1141 LF 1142 (1163)
Q Consensus 1141 ~~ 1142 (1163)
++
T Consensus 500 v~ 501 (539)
T COG1123 500 VA 501 (539)
T ss_pred EE
Confidence 84
No 284
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.07 E-value=2.1e-10 Score=124.72 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=67.5
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcchhh-hccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGMFN-NANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~~~-~a~~ 1140 (1163)
...+..|||||+++++||.+|+ .+|++++||||+++||+.....+.++|.+... +..+|++||+...+. +||+
T Consensus 145 ~~~~~~LSgGe~qrv~laral~----~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~ 220 (265)
T TIGR02769 145 DKLPRQLSGGQLQRINIARALA----VKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQR 220 (265)
T ss_pred hCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcE
Confidence 3567899999999999999997 68899999999999999999999999987643 689999999988764 7999
Q ss_pred eeee
Q 001073 1141 LFRT 1144 (1163)
Q Consensus 1141 ~~gv 1144 (1163)
++-+
T Consensus 221 i~~l 224 (265)
T TIGR02769 221 VAVM 224 (265)
T ss_pred EEEE
Confidence 8764
No 285
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=99.07 E-value=3.5e-06 Score=101.37 Aligned_cols=137 Identities=14% Similarity=0.227 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhhcCCCCCccccCCCChhHHHHHHHHHHHHHHhh
Q 001073 885 QDKLGEAKLERKRLENEVKRMEMEQKDCSTKVDKLIEKHAWIASEKQLFGRSGTDYDFESRDPYKAREELEKLQAEQSGL 964 (1163)
Q Consensus 885 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l 964 (1163)
...+..+..+...+...+..+......+...+..+...+..+......-..|+.|..|.. ....+..++..+..++..
T Consensus 389 ~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~-~~~~~~~~i~~l~~~L~~- 466 (569)
T PRK04778 389 LKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLE-MFFEVSDEIEALAEELEE- 466 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHH-HHHHHHHHHHHHHHHhcc-
Confidence 333333333333333333333333333333444433333333322222233444333321 123678899999999998
Q ss_pred hhhcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhH
Q 001073 965 EKRVNKKVMA-MFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLKVTWVKVNKDFGSI 1029 (1163)
Q Consensus 965 ~~~vn~~~~e-~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~f~~~ 1029 (1163)
+ +||+.+++ .|+....++..+..+.+++..+...++..|.. ..+|..+|..|+..|..-
T Consensus 467 g-~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy-----~nRfr~~~~~V~~~f~~A 526 (569)
T PRK04778 467 K-PINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY-----ANRYRSDNEEVAEALNEA 526 (569)
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhccCCCCHHHHHHHHHH
Confidence 6 89999999 99999999999999999999999999998887 677999999999999753
No 286
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.07 E-value=2.6e-10 Score=121.09 Aligned_cols=77 Identities=18% Similarity=0.241 Sum_probs=67.4
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCc--chhhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKE--GMFNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~--~~~~~a~~ 1140 (1163)
...+..|||||+++++||++|+ .+|+++|||||++|||+.....+..+|.+.. .+.++|++||+. .+...||+
T Consensus 138 ~~~~~~LS~G~~qrl~laral~----~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~ 213 (226)
T cd03234 138 GNLVKGISGGERRRVSIAVQLL----WDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDR 213 (226)
T ss_pred cccccCcCHHHHHHHHHHHHHH----hCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCE
Confidence 3567899999999999999998 5889999999999999999999999998764 467999999997 57888998
Q ss_pred eeee
Q 001073 1141 LFRT 1144 (1163)
Q Consensus 1141 ~~gv 1144 (1163)
++-+
T Consensus 214 i~~l 217 (226)
T cd03234 214 ILLL 217 (226)
T ss_pred EEEE
Confidence 8653
No 287
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.07 E-value=2.2e-10 Score=123.75 Aligned_cols=73 Identities=23% Similarity=0.281 Sum_probs=66.5
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFR 1143 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~g 1143 (1163)
...|||||+++++||++|+ .+|+++|||||+++||+.....+.++|.....+.++|+|||+.+++..||+++-
T Consensus 136 g~~LS~G~~qrl~LaRall----~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~v 208 (275)
T cd03289 136 GCVLSHGHKQLMCLARSVL----SKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLV 208 (275)
T ss_pred CCCCCHHHHHHHHHHHHHh----cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEE
Confidence 4589999999999999997 688999999999999999999999999877668899999999999888998854
No 288
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.07 E-value=2e-10 Score=140.65 Aligned_cols=77 Identities=27% Similarity=0.396 Sum_probs=69.9
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKF 1146 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~ 1146 (1163)
-..|||||||+++||++|. .+||++||||||++||+.+...+.+.|.....+.++|+||||+.++..||+++-+
T Consensus 478 g~~LSGGqrQRi~LARall----~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l-- 551 (582)
T PRK11176 478 GVLLSGGQRQRIAIARALL----RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVV-- 551 (582)
T ss_pred CCcCCHHHHHHHHHHHHHH----hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEE--
Confidence 3579999999999999987 6889999999999999999999999998887789999999999999999999654
Q ss_pred eCC
Q 001073 1147 VDG 1149 (1163)
Q Consensus 1147 ~~g 1149 (1163)
.+|
T Consensus 552 ~~g 554 (582)
T PRK11176 552 EDG 554 (582)
T ss_pred ECC
Confidence 455
No 289
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.07 E-value=2.1e-10 Score=117.86 Aligned_cols=82 Identities=18% Similarity=0.278 Sum_probs=68.5
Q ss_pred cccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-C--CC-eEEEEEeCcchh
Q 001073 1060 GGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-P--HS-QFIVVSLKEGMF 1135 (1163)
Q Consensus 1060 ~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~--~~-q~i~it~~~~~~ 1135 (1163)
......++..||||||++++||+++++|.+.+|||+|||||+++||+.++..+.++|.+.. . ++ .+|++||++..+
T Consensus 100 ~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i 179 (198)
T cd03276 100 NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGL 179 (198)
T ss_pred ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccc
Confidence 3444568999999999999999999988888999999999999999999999999988753 2 34 567777998877
Q ss_pred hhccce
Q 001073 1136 NNANVL 1141 (1163)
Q Consensus 1136 ~~a~~~ 1141 (1163)
...|++
T Consensus 180 ~~~d~v 185 (198)
T cd03276 180 ASSDDV 185 (198)
T ss_pred ccccce
Confidence 666754
No 290
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.07 E-value=2.6e-10 Score=123.33 Aligned_cols=76 Identities=22% Similarity=0.199 Sum_probs=67.7
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcch-hhhccceee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGM-FNNANVLFR 1143 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~-~~~a~~~~g 1143 (1163)
..+..|||||+++++||++|+ .+|+++||||||+|||+.++..+.++|.+...+.++|+|||++.. ...||+++-
T Consensus 145 ~~~~~LS~G~~qrv~laral~----~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~ 220 (261)
T PRK14263 145 VSGLSLSGGQQQRLCIARAIA----TEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAF 220 (261)
T ss_pred CCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEE
Confidence 467899999999999999997 688999999999999999999999999987667899999999884 678998855
Q ss_pred e
Q 001073 1144 T 1144 (1163)
Q Consensus 1144 v 1144 (1163)
+
T Consensus 221 l 221 (261)
T PRK14263 221 F 221 (261)
T ss_pred E
Confidence 4
No 291
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.07 E-value=3.2e-10 Score=116.80 Aligned_cols=72 Identities=24% Similarity=0.335 Sum_probs=63.7
Q ss_pred ccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcc--hhhhccceeee
Q 001073 1069 ELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEG--MFNNANVLFRT 1144 (1163)
Q Consensus 1069 ~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~--~~~~a~~~~gv 1144 (1163)
.|||||+++++||++|+ .+||+++||||+++||+..+..+.++|.+.. .+.++|++||++. ....||+++-+
T Consensus 111 ~LS~G~~qrv~laral~----~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l 185 (194)
T cd03213 111 GLSGGERKRVSIALELV----SNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLL 185 (194)
T ss_pred cCCHHHHHHHHHHHHHH----cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEE
Confidence 89999999999999998 5889999999999999999999999998764 4789999999985 45679988653
No 292
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.07 E-value=2.5e-10 Score=130.05 Aligned_cols=80 Identities=14% Similarity=0.138 Sum_probs=68.5
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
.+++..||||||++++||++|+ .+|+++|||||++|||+..+..+..+|.+.. .+..+|++||++..+ ..||++
T Consensus 138 d~~~~~LSGGQrQRVaLArAL~----~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrI 213 (549)
T PRK13545 138 YQPVKTYSSGMKSRLGFAISVH----INPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKA 213 (549)
T ss_pred hCCcccCCHHHHHHHHHHHHHH----hCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEE
Confidence 4568899999999999999998 5789999999999999999999999998764 467999999998765 569988
Q ss_pred eeeeeeCC
Q 001073 1142 FRTKFVDG 1149 (1163)
Q Consensus 1142 ~gv~~~~g 1149 (1163)
+- +.+|
T Consensus 214 iv--L~~G 219 (549)
T PRK13545 214 LW--LHYG 219 (549)
T ss_pred EE--EECC
Confidence 64 3455
No 293
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.07 E-value=2.3e-10 Score=122.96 Aligned_cols=77 Identities=19% Similarity=0.217 Sum_probs=66.9
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcc-hhhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEG-MFNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~-~~~~a~~~ 1141 (1163)
...+..|||||+++++||++|+ .+|++++|||||++||+..+..+.++|..+. .+.++|++||++. +...||++
T Consensus 132 ~~~~~~LS~G~~qrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v 207 (241)
T PRK10895 132 DSMGQSLSGGERRRVEIARALA----ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERA 207 (241)
T ss_pred hcchhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEE
Confidence 4567899999999999999997 6889999999999999999999999988764 4789999999985 56779988
Q ss_pred eee
Q 001073 1142 FRT 1144 (1163)
Q Consensus 1142 ~gv 1144 (1163)
+-+
T Consensus 208 ~~l 210 (241)
T PRK10895 208 YIV 210 (241)
T ss_pred EEE
Confidence 653
No 294
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.07 E-value=2.6e-10 Score=124.75 Aligned_cols=80 Identities=19% Similarity=0.290 Sum_probs=68.8
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcchh-hhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~~-~~a~~ 1140 (1163)
.+.+..|||||+++++||++|+ .+|+++||||||+|||+.++..+.++|.+... +.++|++||++..+ ..||+
T Consensus 132 ~~~~~~LS~Gq~qrl~laraL~----~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~dr 207 (277)
T PRK13652 132 DRVPHHLSGGEKKRVAIAGVIA----MEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADY 207 (277)
T ss_pred cCCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 4567899999999999999998 58899999999999999999999999987643 68999999998875 68998
Q ss_pred eeeeeeeCC
Q 001073 1141 LFRTKFVDG 1149 (1163)
Q Consensus 1141 ~~gv~~~~g 1149 (1163)
++- |.+|
T Consensus 208 v~~--l~~G 214 (277)
T PRK13652 208 IYV--MDKG 214 (277)
T ss_pred EEE--EECC
Confidence 854 3455
No 295
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.07 E-value=3.1e-10 Score=120.43 Aligned_cols=80 Identities=20% Similarity=0.291 Sum_probs=68.3
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~~~ 1142 (1163)
.+++..|||||+++++||..|+.. ..+|++++||||++|||+..+..+.++|..+. .+..+|+|||++..+..||+++
T Consensus 164 ~~~~~~LSgGe~QRl~LAraL~~~-~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~aD~ii 242 (261)
T cd03271 164 GQPATTLSGGEAQRIKLAKELSKR-STGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWII 242 (261)
T ss_pred cCccccCCHHHHHHHHHHHHHhcC-CCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 467889999999999999998741 01368999999999999999999999998764 4789999999999999999876
Q ss_pred ee
Q 001073 1143 RT 1144 (1163)
Q Consensus 1143 gv 1144 (1163)
-.
T Consensus 243 ~L 244 (261)
T cd03271 243 DL 244 (261)
T ss_pred Ee
Confidence 54
No 296
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.07 E-value=2.3e-10 Score=129.22 Aligned_cols=76 Identities=22% Similarity=0.209 Sum_probs=66.4
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~-~~~a~~ 1140 (1163)
.+.+..||||||++++||++|+ .+|++++||||+++||+..+..+..+|.+... +..+|+|||+... ..+||+
T Consensus 126 ~~~~~~LSgGqkqRvalAraL~----~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~ 201 (354)
T TIGR02142 126 GRLPGRLSGGEKQRVAIGRALL----SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADR 201 (354)
T ss_pred cCChhhCCHHHHHHHHHHHHHH----cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 4568899999999999999998 57899999999999999999999999987643 6789999999875 567998
Q ss_pred eee
Q 001073 1141 LFR 1143 (1163)
Q Consensus 1141 ~~g 1143 (1163)
++-
T Consensus 202 i~~ 204 (354)
T TIGR02142 202 VVV 204 (354)
T ss_pred EEE
Confidence 754
No 297
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.07 E-value=2e-10 Score=128.59 Aligned_cols=81 Identities=19% Similarity=0.273 Sum_probs=69.3
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcc-hhhhcc
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEG-MFNNAN 1139 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~-~~~~a~ 1139 (1163)
..+.+..|||||+|+++||++|+ ..|++++||||+++||+..+..+...|..... +.++|+|||+.. .+..||
T Consensus 130 ~~r~~~~LSgGq~QRVaLARaL~----~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD 205 (351)
T PRK11432 130 EDRYVDQISGGQQQRVALARALI----LKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSD 205 (351)
T ss_pred hcCChhhCCHHHHHHHHHHHHHH----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC
Confidence 35678999999999999999998 57899999999999999999999999887643 689999999986 578899
Q ss_pred ceeeeeeeCC
Q 001073 1140 VLFRTKFVDG 1149 (1163)
Q Consensus 1140 ~~~gv~~~~g 1149 (1163)
+++- |.+|
T Consensus 206 ~i~v--m~~G 213 (351)
T PRK11432 206 TVIV--MNKG 213 (351)
T ss_pred EEEE--EECC
Confidence 9854 4444
No 298
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.07 E-value=2e-10 Score=128.88 Aligned_cols=82 Identities=26% Similarity=0.286 Sum_probs=69.6
Q ss_pred cccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcc-hhhhc
Q 001073 1062 VWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEG-MFNNA 1138 (1163)
Q Consensus 1062 ~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~-~~~~a 1138 (1163)
...+.+..|||||+|+++||++|+ ..|++++||||+++||+..+..+...|.+.. .+.++|++||+.. .+..|
T Consensus 127 ~~~~~~~~LSgGq~QRvaLARaL~----~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~ 202 (353)
T TIGR03265 127 SERKYPGQLSGGQQQRVALARALA----TSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMA 202 (353)
T ss_pred hhhCChhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhC
Confidence 335678999999999999999998 5789999999999999999999999998753 3689999999987 57889
Q ss_pred cceeeeeeeCC
Q 001073 1139 NVLFRTKFVDG 1149 (1163)
Q Consensus 1139 ~~~~gv~~~~g 1149 (1163)
|+++- |.+|
T Consensus 203 d~i~v--l~~G 211 (353)
T TIGR03265 203 DRIVV--MNHG 211 (353)
T ss_pred CEEEE--EECC
Confidence 98843 4444
No 299
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.06 E-value=3.1e-10 Score=112.98 Aligned_cols=84 Identities=43% Similarity=0.576 Sum_probs=73.3
Q ss_pred cccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhh-CCCCeEEEEEeCcchhhhccceeeeee
Q 001073 1068 SELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH-FPHSQFIVVSLKEGMFNNANVLFRTKF 1146 (1163)
Q Consensus 1068 ~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~-~~~~q~i~it~~~~~~~~a~~~~gv~~ 1146 (1163)
..|||||+++++|+.+|+...+.+++++|+|||++++|+.....+...|.+. ..+.++|++||++++...+|++|.+..
T Consensus 76 ~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 4599999999999999986555688999999999999999999999988765 336899999999999999999999888
Q ss_pred eC-Cce
Q 001073 1147 VD-GVS 1151 (1163)
Q Consensus 1147 ~~-g~S 1151 (1163)
.. |+|
T Consensus 156 ~~~~~~ 161 (162)
T cd03227 156 VITGVY 161 (162)
T ss_pred Eecccc
Confidence 54 554
No 300
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.06 E-value=3e-10 Score=122.78 Aligned_cols=75 Identities=20% Similarity=0.346 Sum_probs=64.8
Q ss_pred ccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC-CCeEEEEEeCcchhhh--ccceeeee
Q 001073 1069 ELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP-HSQFIVVSLKEGMFNN--ANVLFRTK 1145 (1163)
Q Consensus 1069 ~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~-~~q~i~it~~~~~~~~--a~~~~gv~ 1145 (1163)
.||||||++++||.+|+ .+|++++|||||++||+..+..+.++|....+ +.++|++||+...... ||+++-
T Consensus 145 ~LS~G~~qrv~laral~----~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~-- 218 (248)
T PRK09580 145 GFSGGEKKRNDILQMAV----LEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHV-- 218 (248)
T ss_pred CCCHHHHHHHHHHHHHH----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEE--
Confidence 79999999999999997 68899999999999999999999999887643 6899999999888765 788753
Q ss_pred eeCC
Q 001073 1146 FVDG 1149 (1163)
Q Consensus 1146 ~~~g 1149 (1163)
|.+|
T Consensus 219 l~~g 222 (248)
T PRK09580 219 LYQG 222 (248)
T ss_pred EECC
Confidence 4455
No 301
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=3.4e-10 Score=125.32 Aligned_cols=75 Identities=24% Similarity=0.254 Sum_probs=66.7
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcch-hhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGM-FNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~-~~~a~~~~ 1142 (1163)
...+..|||||+++++||.+|+ .+|+++|||||++|||+.+...+.++|.+...+.++|||||+... ..+||+++
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~----~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~ 270 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLA----VDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTA 270 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEE
Confidence 3567899999999999999998 688999999999999999999999999987666899999999876 56799854
No 302
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.06 E-value=4.2e-10 Score=109.41 Aligned_cols=70 Identities=29% Similarity=0.407 Sum_probs=61.7
Q ss_pred cccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhccceee
Q 001073 1068 SELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVLFR 1143 (1163)
Q Consensus 1068 ~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~~g 1143 (1163)
.+|||||+++++||++|+ .+||+++||||+++||+.++..+.++|.+. ..++|++||+.+.. ..||+++-
T Consensus 69 ~~lS~G~~~rv~laral~----~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~ 139 (144)
T cd03221 69 EQLSGGEKMRLALAKLLL----ENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIE 139 (144)
T ss_pred ccCCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEE
Confidence 349999999999999997 588999999999999999999999999876 36899999998765 56898864
No 303
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.06 E-value=2.4e-10 Score=121.85 Aligned_cols=77 Identities=23% Similarity=0.305 Sum_probs=67.3
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~-~~~a~~ 1140 (1163)
...+..|||||+++++||++|+ .+||++|||||++|||+..+..+.++|.+... +.++|++||++.. ...||+
T Consensus 125 ~~~~~~lS~G~~qrl~laral~----~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~ 200 (232)
T cd03300 125 NRKPSQLSGGQQQRVAIARALV----NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDR 200 (232)
T ss_pred cCChhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCE
Confidence 3457899999999999999998 68899999999999999999999999987643 7899999999986 677998
Q ss_pred eeee
Q 001073 1141 LFRT 1144 (1163)
Q Consensus 1141 ~~gv 1144 (1163)
++-+
T Consensus 201 i~~l 204 (232)
T cd03300 201 IAVM 204 (232)
T ss_pred EEEE
Confidence 8543
No 304
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=3.5e-10 Score=122.20 Aligned_cols=77 Identities=21% Similarity=0.218 Sum_probs=67.7
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcch-hhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGM-FNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~-~~~a~~~~ 1142 (1163)
..++..|||||+++++||++|+ .+|+++|||||+++||+.++..+.++|.+...+.++|++||++.. ..+||+++
T Consensus 140 ~~~~~~LS~G~~qrv~laral~----~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~ 215 (249)
T PRK14253 140 KSHAFGLSGGQQQRLCIARTIA----MEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTA 215 (249)
T ss_pred hcCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEE
Confidence 3567899999999999999997 577999999999999999999999999987666899999999886 55699886
Q ss_pred ee
Q 001073 1143 RT 1144 (1163)
Q Consensus 1143 gv 1144 (1163)
-+
T Consensus 216 ~l 217 (249)
T PRK14253 216 FF 217 (249)
T ss_pred EE
Confidence 53
No 305
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=3.2e-10 Score=124.23 Aligned_cols=75 Identities=23% Similarity=0.260 Sum_probs=66.2
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~~ 1142 (1163)
...+..||||||++++||++|+ .+|+++|||||+++||+.++..+..+|.....+..+|++||+...+ .+||+++
T Consensus 175 ~~~~~~LSgGe~qrv~LAraL~----~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~ 250 (285)
T PRK14254 175 DSSGLDLSGGQQQRLCIARAIA----PDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTA 250 (285)
T ss_pred hCCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEE
Confidence 3567899999999999999997 6789999999999999999999999998876568899999998875 5699864
No 306
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.06 E-value=2.5e-10 Score=109.56 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=66.7
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCe-EEEEEeC-cchhhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQ-FIVVSLK-EGMFNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q-~i~it~~-~~~~~~a~~~ 1141 (1163)
..+..+||||||.|+-||++||. .|.|++||||.||.||..+..|.++|..+....- ++|+-|+ .+++..||+.
T Consensus 134 ~~~a~sLSGGERRR~EIARaLa~----~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRa 209 (243)
T COG1137 134 DSKAYSLSGGERRRVEIARALAA----NPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRA 209 (243)
T ss_pred cCcccccccchHHHHHHHHHHhc----CCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheE
Confidence 45678999999999999999994 7799999999999999999999999988765444 5555677 5799999999
Q ss_pred eeee
Q 001073 1142 FRTK 1145 (1163)
Q Consensus 1142 ~gv~ 1145 (1163)
|=|.
T Consensus 210 YIi~ 213 (243)
T COG1137 210 YIIS 213 (243)
T ss_pred EEEe
Confidence 9765
No 307
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.06 E-value=3.1e-10 Score=123.23 Aligned_cols=78 Identities=24% Similarity=0.235 Sum_probs=68.4
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcc-hhhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEG-MFNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~-~~~~a~~~~ 1142 (1163)
...+..|||||+++++||++|+ .+|+++|||||+++||+.++..+.++|.....+.++|++||+.. +..+||+++
T Consensus 146 ~~~~~~LSgGq~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~ 221 (264)
T PRK14243 146 KQSGLSLSGGQQQRLCIARAIA----VQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTA 221 (264)
T ss_pred cCCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE
Confidence 3568899999999999999998 57799999999999999999999999988766689999999986 467899886
Q ss_pred eee
Q 001073 1143 RTK 1145 (1163)
Q Consensus 1143 gv~ 1145 (1163)
-..
T Consensus 222 ~l~ 224 (264)
T PRK14243 222 FFN 224 (264)
T ss_pred EEe
Confidence 543
No 308
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.06 E-value=3.7e-10 Score=122.86 Aligned_cols=77 Identities=21% Similarity=0.211 Sum_probs=68.2
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcch-hhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGM-FNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~-~~~a~~~~ 1142 (1163)
...+..|||||+++++||.+|+ .+|++++||||+++||+.++..+..+|.....+.++|+|||++.. ...||+++
T Consensus 158 ~~~~~~LS~G~~qrl~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~ 233 (267)
T PRK14237 158 HKSALTLSGGQQQRLCIARAIA----VKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTA 233 (267)
T ss_pred cCCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEE
Confidence 3568899999999999999998 588999999999999999999999999887667899999999875 57899886
Q ss_pred ee
Q 001073 1143 RT 1144 (1163)
Q Consensus 1143 gv 1144 (1163)
-+
T Consensus 234 ~l 235 (267)
T PRK14237 234 FF 235 (267)
T ss_pred EE
Confidence 53
No 309
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=3.1e-10 Score=123.15 Aligned_cols=78 Identities=22% Similarity=0.215 Sum_probs=68.4
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcch-hhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGM-FNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~-~~~a~~~~ 1142 (1163)
...+..|||||+++++||++|+ .+|++++|||||++||+.+...+.++|.+...+.++|++||+++. ...||+++
T Consensus 145 ~~~~~~LS~G~~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~ 220 (259)
T PRK14260 145 NKSALGLSGGQQQRLCIARALA----IKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTA 220 (259)
T ss_pred cCCcccCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEE
Confidence 3568899999999999999997 688999999999999999999999999887666899999999876 56799876
Q ss_pred eee
Q 001073 1143 RTK 1145 (1163)
Q Consensus 1143 gv~ 1145 (1163)
-+.
T Consensus 221 ~l~ 223 (259)
T PRK14260 221 FFS 223 (259)
T ss_pred EEe
Confidence 554
No 310
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.06 E-value=2.9e-10 Score=122.90 Aligned_cols=80 Identities=24% Similarity=0.295 Sum_probs=68.5
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchh-hhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~-~~a~~ 1140 (1163)
...+..|||||+++++||.+|+ .+|+++|||||+++||+.++..+..+|.+.. .+.++|++||+...+ .+||+
T Consensus 135 ~~~~~~LS~Gq~qrv~laral~----~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~ 210 (254)
T PRK10418 135 KLYPFEMSGGMLQRMMIALALL----CEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADD 210 (254)
T ss_pred hcCCcccCHHHHHHHHHHHHHh----cCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCE
Confidence 3567899999999999999998 5789999999999999999999999998764 368999999998875 57998
Q ss_pred eeeeeeeCC
Q 001073 1141 LFRTKFVDG 1149 (1163)
Q Consensus 1141 ~~gv~~~~g 1149 (1163)
++- +.+|
T Consensus 211 v~~--l~~G 217 (254)
T PRK10418 211 VAV--MSHG 217 (254)
T ss_pred EEE--EECC
Confidence 754 3455
No 311
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.06 E-value=2.9e-10 Score=121.51 Aligned_cols=77 Identities=25% Similarity=0.314 Sum_probs=67.7
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~-~~~a~~ 1140 (1163)
...+..|||||+++++||++|+ .+||+++||||++|||+.++..+.++|.+... +.++|++||++.. ...||+
T Consensus 125 ~~~~~~lS~G~~qrl~laral~----~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~ 200 (237)
T TIGR00968 125 DRYPNQLSGGQRQRVALARALA----VEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADR 200 (237)
T ss_pred hCChhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCE
Confidence 3457899999999999999998 68899999999999999999999999987643 6899999999986 677999
Q ss_pred eeee
Q 001073 1141 LFRT 1144 (1163)
Q Consensus 1141 ~~gv 1144 (1163)
++.+
T Consensus 201 i~~l 204 (237)
T TIGR00968 201 IVVM 204 (237)
T ss_pred EEEE
Confidence 8664
No 312
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.06 E-value=2.5e-10 Score=139.89 Aligned_cols=79 Identities=27% Similarity=0.406 Sum_probs=71.1
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKF 1146 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~ 1146 (1163)
...||||||||++||++|. .+||+++|||||++||+.+...+.+.|.....+.++|+||||+.++..||+++- |
T Consensus 474 g~~LSGGqrQRialARaLl----~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~--l 547 (592)
T PRK10790 474 GNNLSVGQKQLLALARVLV----QTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILV--L 547 (592)
T ss_pred CCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEE--E
Confidence 4579999999999999987 788999999999999999999999999888778999999999999999999964 5
Q ss_pred eCCce
Q 001073 1147 VDGVS 1151 (1163)
Q Consensus 1147 ~~g~S 1151 (1163)
.+|.-
T Consensus 548 ~~G~i 552 (592)
T PRK10790 548 HRGQA 552 (592)
T ss_pred ECCEE
Confidence 56653
No 313
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.06 E-value=3.1e-10 Score=117.89 Aligned_cols=75 Identities=23% Similarity=0.353 Sum_probs=63.5
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcc-hhhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEG-MFNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~-~~~~a~~~ 1141 (1163)
...+..|||||+++++||++|+ .+|+++||||||++||+..+..+.++|.+.. .+.++|++||++. ....++++
T Consensus 120 ~~~~~~LS~G~~qrl~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~ 195 (201)
T cd03231 120 DRPVAQLSAGQQRRVALARLLL----SGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARE 195 (201)
T ss_pred cCchhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhcccee
Confidence 3567899999999999999998 6889999999999999999999999998764 4678999999865 44555555
Q ss_pred e
Q 001073 1142 F 1142 (1163)
Q Consensus 1142 ~ 1142 (1163)
+
T Consensus 196 ~ 196 (201)
T cd03231 196 L 196 (201)
T ss_pred E
Confidence 4
No 314
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.05 E-value=3e-10 Score=123.19 Aligned_cols=82 Identities=21% Similarity=0.303 Sum_probs=68.0
Q ss_pred ccccccccChHHHHHHHHHHHHHH-hc----cCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcchh
Q 001073 1063 WKQSLSELSGGQRSLLALSLILAL-LL----FKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGMF 1135 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal-~~----~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~~ 1135 (1163)
..+.+..|||||+++++||++|+. |. -.+|++++||||+++||+.++..+.++|.+... +.++|+|||+...+
T Consensus 139 ~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~ 218 (272)
T PRK13547 139 VGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLA 218 (272)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 346789999999999999998872 00 026799999999999999999999999987643 68899999998876
Q ss_pred -hhccceeee
Q 001073 1136 -NNANVLFRT 1144 (1163)
Q Consensus 1136 -~~a~~~~gv 1144 (1163)
.+||+++-+
T Consensus 219 ~~~~d~i~~l 228 (272)
T PRK13547 219 ARHADRIAML 228 (272)
T ss_pred HHhCCEEEEE
Confidence 579988654
No 315
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.05 E-value=3.8e-10 Score=123.82 Aligned_cols=80 Identities=25% Similarity=0.320 Sum_probs=69.2
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~~ 1142 (1163)
...+..|||||+++++||.+|+ .+|+++|||||+++||+.....+.++|.+...+.++|++||+...+ .+||+++
T Consensus 177 ~~~~~~LSgGq~qrv~LAraL~----~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~ 252 (286)
T PRK14275 177 DKNALGLSGGQQQRLCVARTLA----VEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTM 252 (286)
T ss_pred hCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEE
Confidence 3568899999999999999998 5789999999999999999999999998876668899999998874 6799886
Q ss_pred eeeeeCC
Q 001073 1143 RTKFVDG 1149 (1163)
Q Consensus 1143 gv~~~~g 1149 (1163)
- |.+|
T Consensus 253 ~--L~~G 257 (286)
T PRK14275 253 F--FYEG 257 (286)
T ss_pred E--EECC
Confidence 5 3454
No 316
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.05 E-value=4e-10 Score=121.80 Aligned_cols=81 Identities=22% Similarity=0.220 Sum_probs=69.4
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~~ 1142 (1163)
...+..|||||+++++||++|+ .+|+++|||||+++||+.+...+.++|.....+..+|++||+...+ ..||+++
T Consensus 142 ~~~~~~LS~Gq~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~ 217 (251)
T PRK14249 142 HKSGLALSGGQQQRLCIARVLA----IEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTG 217 (251)
T ss_pred hCCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEE
Confidence 4578899999999999999997 5789999999999999999999999998875678999999998764 5689986
Q ss_pred eeeeeCCc
Q 001073 1143 RTKFVDGV 1150 (1163)
Q Consensus 1143 gv~~~~g~ 1150 (1163)
-+ .+|.
T Consensus 218 ~l--~~G~ 223 (251)
T PRK14249 218 FL--LTGD 223 (251)
T ss_pred EE--eCCe
Confidence 53 4543
No 317
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.05 E-value=3.3e-10 Score=123.28 Aligned_cols=77 Identities=23% Similarity=0.286 Sum_probs=67.6
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcchhh-hccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGMFN-NANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~~~-~a~~ 1140 (1163)
...+..|||||+++++||++|+ .+|+++|||||+++||+.++..+.++|....+ +.++|++||++..+. .||+
T Consensus 146 ~~~~~~LS~Ge~qrl~laral~----~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~ 221 (268)
T PRK10419 146 DKRPPQLSGGQLQRVCLARALA----VEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQR 221 (268)
T ss_pred hCCCccCChHHHHHHHHHHHHh----cCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCE
Confidence 3567899999999999999998 58899999999999999999999999987643 789999999988764 7998
Q ss_pred eeee
Q 001073 1141 LFRT 1144 (1163)
Q Consensus 1141 ~~gv 1144 (1163)
++-+
T Consensus 222 i~~l 225 (268)
T PRK10419 222 VMVM 225 (268)
T ss_pred EEEE
Confidence 8664
No 318
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.05 E-value=4.9e-10 Score=121.27 Aligned_cols=80 Identities=19% Similarity=0.406 Sum_probs=69.9
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
..+..|||||+++++||++|+ .+|+++|||||+++||+.....+.++|.....+.++|++||++..+..||+++-+
T Consensus 152 ~~~~~LS~G~~qrl~laral~----~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l 227 (257)
T cd03288 152 EGGENFSVGQRQLFCLARAFV----RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVL 227 (257)
T ss_pred cCCCcCCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEE
Confidence 356799999999999999997 6789999999999999999999999998776688999999999988889998654
Q ss_pred eeeCCc
Q 001073 1145 KFVDGV 1150 (1163)
Q Consensus 1145 ~~~~g~ 1150 (1163)
.+|.
T Consensus 228 --~~G~ 231 (257)
T cd03288 228 --SRGI 231 (257)
T ss_pred --ECCE
Confidence 4543
No 319
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.05 E-value=3.3e-10 Score=117.47 Aligned_cols=69 Identities=26% Similarity=0.367 Sum_probs=60.5
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhh-CCCCeEEEEEeCcchhh
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH-FPHSQFIVVSLKEGMFN 1136 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~-~~~~q~i~it~~~~~~~ 1136 (1163)
..++..|||||+++++||.+|+ .+|++++||||+++||+.....+.++|.+. ..+.++|++||++.-+.
T Consensus 122 ~~~~~~LS~G~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~ 191 (198)
T TIGR01189 122 DLPAAQLSAGQQRRLALARLWL----SRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV 191 (198)
T ss_pred cCChhhcCHHHHHHHHHHHHHh----cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc
Confidence 3567899999999999999997 688999999999999999999999999875 45789999999885443
No 320
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.05 E-value=3.3e-10 Score=118.38 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=65.0
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhccce
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
....+..||||||++++||++|+ .+||++|||||++++|+.+...+..+|.....+..+|++||++..+ ..||++
T Consensus 98 ~~~~~~~lS~G~~qrv~la~al~----~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i 173 (213)
T PRK15177 98 YTDRVSEYSVTMKTHLAFAINLL----LPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAF 173 (213)
T ss_pred hhchHhhcCHHHHHHHHHHHHHh----cCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCee
Confidence 34678899999999999999997 6889999999999999999999988775433345699999999876 579988
Q ss_pred ee
Q 001073 1142 FR 1143 (1163)
Q Consensus 1142 ~g 1143 (1163)
+-
T Consensus 174 ~~ 175 (213)
T PRK15177 174 GV 175 (213)
T ss_pred EE
Confidence 64
No 321
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.05 E-value=3.4e-10 Score=105.10 Aligned_cols=79 Identities=25% Similarity=0.393 Sum_probs=67.1
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcch-hhhcc
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGM-FNNAN 1139 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~-~~~a~ 1139 (1163)
..+++..|||||||++||++-|- ..|.+++|||||++||+.|.++|-+||...- .+.-++-|||.+.- +.+||
T Consensus 127 L~k~it~lSGGE~QriAliR~Lq----~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~ 202 (223)
T COG4619 127 LTKNITELSGGEKQRIALIRNLQ----FMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHAD 202 (223)
T ss_pred hcchhhhccchHHHHHHHHHHhh----cCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhh
Confidence 34679999999999999988763 3458999999999999999999999987643 46779999999875 99999
Q ss_pred ceeeee
Q 001073 1140 VLFRTK 1145 (1163)
Q Consensus 1140 ~~~gv~ 1145 (1163)
+.+.|+
T Consensus 203 k~itl~ 208 (223)
T COG4619 203 KVITLQ 208 (223)
T ss_pred eEEEec
Confidence 987655
No 322
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.05 E-value=4e-10 Score=118.97 Aligned_cols=74 Identities=22% Similarity=0.317 Sum_probs=64.3
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHH--HHhhhC-CCCeEEEEEeCcchhhhccce
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGR--MIKTHF-PHSQFIVVSLKEGMFNNANVL 1141 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~--~l~~~~-~~~q~i~it~~~~~~~~a~~~ 1141 (1163)
..+..|||||+++++||.+|+ .+|+++||||||++||+.++..+.+ ++.... .+..+|++||+...+..||++
T Consensus 136 ~~~~~LS~G~~qrv~laral~----~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i 211 (218)
T cd03290 136 ERGINLSGGQRQRICVARALY----QNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWI 211 (218)
T ss_pred cCCCcCCHHHHHHHHHHHHHh----hCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEE
Confidence 457899999999999999997 5889999999999999999998887 555543 468999999999888889987
Q ss_pred e
Q 001073 1142 F 1142 (1163)
Q Consensus 1142 ~ 1142 (1163)
+
T Consensus 212 ~ 212 (218)
T cd03290 212 I 212 (218)
T ss_pred E
Confidence 4
No 323
>PRK13409 putative ATPase RIL; Provisional
Probab=99.05 E-value=2.5e-10 Score=136.89 Aligned_cols=77 Identities=26% Similarity=0.383 Sum_probs=67.9
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcchh-hhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~~-~~a~~ 1140 (1163)
.+++..|||||+|+++||.+|+ .+|++++|||||+|||+.++..+.++|.++.. +..+|+|||+..++ ..||+
T Consensus 448 ~~~~~~LSGGe~QRvaiAraL~----~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDr 523 (590)
T PRK13409 448 DKNVKDLSGGELQRVAIAACLS----RDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDR 523 (590)
T ss_pred hCCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 4678999999999999999998 68899999999999999999999999998743 68899999998865 56999
Q ss_pred eeee
Q 001073 1141 LFRT 1144 (1163)
Q Consensus 1141 ~~gv 1144 (1163)
++-+
T Consensus 524 vivl 527 (590)
T PRK13409 524 LMVF 527 (590)
T ss_pred EEEE
Confidence 8654
No 324
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.05 E-value=4.1e-10 Score=121.06 Aligned_cols=84 Identities=19% Similarity=0.345 Sum_probs=68.4
Q ss_pred cccccccChHHHHHHHHHHHHHHh-c-cC-CCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcc-hhhhc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALL-L-FK-PAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEG-MFNNA 1138 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~-~-~~-~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~-~~~~a 1138 (1163)
...+..|||||+++++||++|+.. . .. +|++++||||+++||+.++..+..+|.... .+.++|++||+.. +...|
T Consensus 121 ~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~ 200 (248)
T PRK03695 121 GRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHA 200 (248)
T ss_pred cCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhC
Confidence 456889999999999999988720 0 01 459999999999999999999999998764 4689999999987 56789
Q ss_pred cceeeeeeeCC
Q 001073 1139 NVLFRTKFVDG 1149 (1163)
Q Consensus 1139 ~~~~gv~~~~g 1149 (1163)
|+++- |.+|
T Consensus 201 d~i~~--l~~G 209 (248)
T PRK03695 201 DRVWL--LKQG 209 (248)
T ss_pred CEEEE--EECC
Confidence 98864 3454
No 325
>PRK02224 chromosome segregation protein; Provisional
Probab=99.05 E-value=0.0004 Score=89.95 Aligned_cols=149 Identities=23% Similarity=0.317 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHhhhcCC-ccccccCCCCCcccccchhhhhccccccccccccChHHHH
Q 001073 998 SKIKKVIEELDEKKKETLKVTWVKVNKDFGSIFSTLLPG-TMAKLEPPEGGNFLDGLEVCVAFGGVWKQSLSELSGGQRS 1076 (1163)
Q Consensus 998 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~f~~~~~~l~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgGek~ 1076 (1163)
..+...+..+...++..| ...+...|..+|..++++ ++..+.+.+ + .++.+ +.++|.+ .++..||||+++
T Consensus 718 ~~L~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~--~~i~~-~~~~g~~-~~~~~lS~G~~~ 788 (880)
T PRK02224 718 EELESMYGDLRAELRQRN---VETLERMLNETFDLVYQNDAYSHIELDG--E--YELTV-YQKDGEP-LEPEQLSGGERA 788 (880)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcCCCCeeEEEecC--C--cceee-eCCCCCc-cChhhcCccHHH
Confidence 334444444444444333 344555778888877754 334443221 1 23332 3344543 468999999999
Q ss_pred HHHHHHHHHHhcc--------CCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcchhhhccceeeeee
Q 001073 1077 LLALSLILALLLF--------KPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGMFNNANVLFRTKF 1146 (1163)
Q Consensus 1077 ~~~ia~~lal~~~--------~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~~~~a~~~~gv~~ 1146 (1163)
.++||+.+|+..+ .|+|++|||||+++||+.++..++.+|..+.. .+|+|||||++.++..||++|+|+-
T Consensus 789 ~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ad~~~~~~~ 868 (880)
T PRK02224 789 LFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGAADDLVRVEK 868 (880)
T ss_pred HHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHhcCeeEEeec
Confidence 8888888877532 24578999999999999999999999987653 3699999999999999999999998
Q ss_pred eC--CceEEEE
Q 001073 1147 VD--GVSTVQR 1155 (1163)
Q Consensus 1147 ~~--g~S~v~~ 1155 (1163)
.+ .+|+|.+
T Consensus 869 ~~~~~~~~~~~ 879 (880)
T PRK02224 869 DPTTNRSSVER 879 (880)
T ss_pred CCCcCcccccC
Confidence 65 6788765
No 326
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.04 E-value=4.1e-10 Score=121.84 Aligned_cols=81 Identities=25% Similarity=0.216 Sum_probs=69.8
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~~ 1142 (1163)
...+..|||||+++++||++|+ .+|++++||||++|||+.++..+.++|.....+.++|++||+...+ ..||+++
T Consensus 144 ~~~~~~LS~G~~qrv~laral~----~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~ 219 (253)
T PRK14261 144 HDSALSLSGGQQQRLCIARTLA----VNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTG 219 (253)
T ss_pred hcChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEE
Confidence 3568899999999999999987 5789999999999999999999999998876668999999998765 6799886
Q ss_pred eeeeeCCc
Q 001073 1143 RTKFVDGV 1150 (1163)
Q Consensus 1143 gv~~~~g~ 1150 (1163)
- +.+|.
T Consensus 220 ~--l~~G~ 225 (253)
T PRK14261 220 F--MYLGK 225 (253)
T ss_pred E--EECCE
Confidence 4 44553
No 327
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.04 E-value=3.6e-10 Score=137.39 Aligned_cols=79 Identities=25% Similarity=0.420 Sum_probs=70.9
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
.....|||||||+++||++|. .+||++||||||++||+.++..+.+.|.....+.++|+|||++.++..||+++-
T Consensus 467 ~~~~~LSgGq~qrl~lARall----~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~- 541 (585)
T TIGR01192 467 ERGNRLSGGERQRLAIARAIL----KNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLF- 541 (585)
T ss_pred CCCCCCCHHHHHHHHHHHHHh----cCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEE-
Confidence 346789999999999999997 788999999999999999999999999887778999999999999999999864
Q ss_pred eeeCC
Q 001073 1145 KFVDG 1149 (1163)
Q Consensus 1145 ~~~~g 1149 (1163)
+.+|
T Consensus 542 -l~~G 545 (585)
T TIGR01192 542 -LDQG 545 (585)
T ss_pred -EECC
Confidence 4455
No 328
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.04 E-value=4.2e-10 Score=123.26 Aligned_cols=72 Identities=24% Similarity=0.349 Sum_probs=64.8
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhh-CCCCeEEEEEeCcchhhhcccee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH-FPHSQFIVVSLKEGMFNNANVLF 1142 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~-~~~~q~i~it~~~~~~~~a~~~~ 1142 (1163)
-..||||||||++||++| +..|-|+|||||+++||..-+..+...|... ..+..+|+|||||..+..+|++.
T Consensus 470 G~~LSgGQRQRIaLARAl----YG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkil 542 (580)
T COG4618 470 GATLSGGQRQRIALARAL----YGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKIL 542 (580)
T ss_pred CCCCCchHHHHHHHHHHH----cCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceee
Confidence 468999999999999977 5788899999999999999999998877664 67899999999999999999984
No 329
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.04 E-value=2.9e-10 Score=136.66 Aligned_cols=81 Identities=19% Similarity=0.279 Sum_probs=69.9
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchh-hhcc
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMF-NNAN 1139 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~-~~a~ 1139 (1163)
..+.+..||||||++++||.+|+ .+|++++|||||++||+.++..+.++|.++. .+..+|+|||+...+ .+||
T Consensus 162 ~~~~~~~LSgGq~qrv~iA~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d 237 (520)
T TIGR03269 162 ITHIARDLSGGEKQRVVLARQLA----KEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSD 237 (520)
T ss_pred hhcCcccCCHHHHHHHHHHHHHh----cCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcC
Confidence 34678999999999999999998 5889999999999999999999999998863 367899999998875 5799
Q ss_pred ceeeeeeeCC
Q 001073 1140 VLFRTKFVDG 1149 (1163)
Q Consensus 1140 ~~~gv~~~~g 1149 (1163)
+++- |.+|
T Consensus 238 ~i~~--l~~G 245 (520)
T TIGR03269 238 KAIW--LENG 245 (520)
T ss_pred EEEE--EeCC
Confidence 9864 4455
No 330
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.04 E-value=4e-10 Score=122.03 Aligned_cols=75 Identities=19% Similarity=0.329 Sum_probs=65.0
Q ss_pred cccc-ccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhh--ccc
Q 001073 1065 QSLS-ELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNN--ANV 1140 (1163)
Q Consensus 1065 ~~~~-~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~--a~~ 1140 (1163)
+.+. .|||||+++++||.+|+ .+|+++||||||++||+..+..+.++|.+.. .+.++|++||++..... ||+
T Consensus 146 ~~~~~~LSgG~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~ 221 (252)
T CHL00131 146 RNVNEGFSGGEKKRNEILQMAL----LDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDY 221 (252)
T ss_pred cccccCCCHHHHHHHHHHHHHH----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCE
Confidence 4455 59999999999999998 5789999999999999999999999998764 47899999999987763 788
Q ss_pred eee
Q 001073 1141 LFR 1143 (1163)
Q Consensus 1141 ~~g 1143 (1163)
++-
T Consensus 222 i~~ 224 (252)
T CHL00131 222 VHV 224 (252)
T ss_pred EEE
Confidence 754
No 331
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.04 E-value=4.9e-10 Score=122.33 Aligned_cols=79 Identities=23% Similarity=0.247 Sum_probs=69.1
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcch-hhhccceee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGM-FNNANVLFR 1143 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~-~~~a~~~~g 1143 (1163)
..+..|||||+++++||++|+ .+|+++|||||++|||+.++..+.++|.+...+.++|++||+... ...||+++-
T Consensus 164 ~~~~~LS~Gq~qrv~laral~----~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~ 239 (272)
T PRK14236 164 ENAFGLSGGQQQRLVIARAIA----IEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAF 239 (272)
T ss_pred CCcccCCHHHHHHHHHHHHHH----CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEE
Confidence 567899999999999999997 688999999999999999999999999887667899999999886 467998865
Q ss_pred eeeeCC
Q 001073 1144 TKFVDG 1149 (1163)
Q Consensus 1144 v~~~~g 1149 (1163)
|.+|
T Consensus 240 --l~~G 243 (272)
T PRK14236 240 --MYMG 243 (272)
T ss_pred --EECC
Confidence 3455
No 332
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.04 E-value=3.4e-10 Score=141.16 Aligned_cols=78 Identities=23% Similarity=0.405 Sum_probs=71.1
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKF 1146 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~ 1146 (1163)
...||||||||++||++|. .+||++||||||++||+.++..+.+.|....++.++|+||||+.++..||+++- |
T Consensus 599 G~~LSgGQrQRlalARall----~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iiv--l 672 (694)
T TIGR03375 599 GRSLSGGQRQAVALARALL----RDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIV--M 672 (694)
T ss_pred CCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEE--E
Confidence 4579999999999999986 788999999999999999999999999888788999999999999999999964 5
Q ss_pred eCCc
Q 001073 1147 VDGV 1150 (1163)
Q Consensus 1147 ~~g~ 1150 (1163)
.+|.
T Consensus 673 ~~G~ 676 (694)
T TIGR03375 673 DNGR 676 (694)
T ss_pred eCCE
Confidence 5664
No 333
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.03 E-value=4.2e-10 Score=120.10 Aligned_cols=77 Identities=19% Similarity=0.219 Sum_probs=66.9
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~-~~~a~~ 1140 (1163)
.+.+..|||||+++++||++++ ..|++++||||++|||+.++..+.++|..... +.++|++||++.. ...||+
T Consensus 124 ~~~~~~LS~G~~qrl~laral~----~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~ 199 (235)
T cd03299 124 NRKPETLSGGEQQRVAIARALV----VNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADK 199 (235)
T ss_pred hcCcccCCHHHHHHHHHHHHHH----cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 4567899999999999999998 57899999999999999999999999987543 7899999999876 567998
Q ss_pred eeee
Q 001073 1141 LFRT 1144 (1163)
Q Consensus 1141 ~~gv 1144 (1163)
++-+
T Consensus 200 i~~l 203 (235)
T cd03299 200 VAIM 203 (235)
T ss_pred EEEE
Confidence 8553
No 334
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.03 E-value=5.1e-10 Score=122.11 Aligned_cols=79 Identities=32% Similarity=0.388 Sum_probs=68.7
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcch-hhhccceee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGM-FNNANVLFR 1143 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~-~~~a~~~~g 1143 (1163)
..+..|||||+++++||++|+ .+|+++|||||+++||+.+...+..+|.+.....++|+|||+... ..+||+++-
T Consensus 159 ~~~~~LSgGq~qrl~LAral~----~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~ 234 (276)
T PRK14271 159 DSPFRLSGGQQQLLCLARTLA----VNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAAL 234 (276)
T ss_pred CCcccCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 468899999999999999997 577999999999999999999999999887656899999999886 567998854
Q ss_pred eeeeCC
Q 001073 1144 TKFVDG 1149 (1163)
Q Consensus 1144 v~~~~g 1149 (1163)
|.+|
T Consensus 235 --l~~G 238 (276)
T PRK14271 235 --FFDG 238 (276)
T ss_pred --EECC
Confidence 3455
No 335
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.03 E-value=3.4e-10 Score=116.46 Aligned_cols=88 Identities=19% Similarity=0.233 Sum_probs=73.1
Q ss_pred hhhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCc-
Q 001073 1056 CVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKE- 1132 (1163)
Q Consensus 1056 ~~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~- 1132 (1163)
.|+..+...+.|++||||++|||.||++|| +.||+++||||.++|||--+..+.+-|.++. -+.++|||||+.
T Consensus 151 ~VgL~~~~~~yp~eLSGGMqQRVGLARAla----~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd 226 (386)
T COG4175 151 LVGLEGYADKYPNELSGGMQQRVGLARALA----NDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD 226 (386)
T ss_pred HcCchhhhhcCcccccchHHHHHHHHHHHc----cCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH
Confidence 456666667889999999999999999999 6889999999999999999988888766543 368899999996
Q ss_pred chhhhccceeeeeeeCC
Q 001073 1133 GMFNNANVLFRTKFVDG 1149 (1163)
Q Consensus 1133 ~~~~~a~~~~gv~~~~g 1149 (1163)
+-+..+|+|-- |.+|
T Consensus 227 EAlriG~rIai--mkdG 241 (386)
T COG4175 227 EALRIGDRIAI--MKDG 241 (386)
T ss_pred HHHhccceEEE--ecCC
Confidence 46888998732 4555
No 336
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.03 E-value=6.6e-10 Score=116.40 Aligned_cols=88 Identities=24% Similarity=0.172 Sum_probs=70.3
Q ss_pred cccccccChHHHHHHHHHHHHHHhc------cCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC-CCeEEEEEeCcchhh
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLL------FKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP-HSQFIVVSLKEGMFN 1136 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~------~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~-~~q~i~it~~~~~~~ 1136 (1163)
..++..|||||+++++||.+||... -.+|+++|||||+++||+.....+..+|..... +..+|+|||++....
T Consensus 118 ~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~ 197 (213)
T cd03279 118 ARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKE 197 (213)
T ss_pred cCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHH
Confidence 4678899999999999999998532 135689999999999999999999999987754 789999999998765
Q ss_pred hccceeeeeeeCCce
Q 001073 1137 NANVLFRTKFVDGVS 1151 (1163)
Q Consensus 1137 ~a~~~~gv~~~~g~S 1151 (1163)
..+..+-|...+|+|
T Consensus 198 ~~~~~i~~~~~~~~~ 212 (213)
T cd03279 198 RIPQRLEVIKTPGGS 212 (213)
T ss_pred hhCcEEEEEecCCCC
Confidence 544444443355776
No 337
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.03 E-value=3.9e-10 Score=136.33 Aligned_cols=74 Identities=26% Similarity=0.340 Sum_probs=68.1
Q ss_pred cccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceee
Q 001073 1066 SLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFR 1143 (1163)
Q Consensus 1066 ~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~g 1143 (1163)
....||||||||++||++|. .+||+++|||||++||+.+...+.+.|....++.++|+||||+.++..||+++-
T Consensus 455 ~g~~LSgGq~qri~laRal~----~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~ 528 (529)
T TIGR02857 455 GGAGLSGGQAQRLALARAFL----RDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVV 528 (529)
T ss_pred ccccCCHHHHHHHHHHHHHh----cCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEe
Confidence 35689999999999999987 788999999999999999999999999888788999999999999999999863
No 338
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.03 E-value=5.2e-10 Score=147.29 Aligned_cols=90 Identities=19% Similarity=0.256 Sum_probs=74.5
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchhhhccceeee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
...||||||||+|||++|. .+||++||||||++||+.+++.|.+.|.... ++.++|+||||..++..||+++-+
T Consensus 1356 G~~LSGGQkQRIaIARALl----r~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl 1431 (1466)
T PTZ00265 1356 GKSLSGGQKQRIAIARALL----REPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVF 1431 (1466)
T ss_pred CCcCCHHHHHHHHHHHHHh----cCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEE
Confidence 4579999999999999997 7889999999999999999999999998763 589999999999999999999765
Q ss_pred eeeC--CceEEEEeeccc
Q 001073 1145 KFVD--GVSTVQRTVATK 1160 (1163)
Q Consensus 1145 ~~~~--g~S~v~~~~~~~ 1160 (1163)
...+ |.--+...||-+
T Consensus 1432 ~~~~~~G~iv~e~Gth~e 1449 (1466)
T PTZ00265 1432 NNPDRTGSFVQAHGTHEE 1449 (1466)
T ss_pred eCCCCCCCEEEEecCHHH
Confidence 3211 533334566643
No 339
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.02 E-value=6e-10 Score=120.24 Aligned_cols=76 Identities=24% Similarity=0.323 Sum_probs=68.1
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhccceee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVLFR 1143 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~~g 1143 (1163)
..+..|||||+++++||.+|+ .+|+++||||||++||+..+..+.++|.+...+.++|++||+...+ ..||+++-
T Consensus 149 ~~~~~LS~G~~qrl~laral~----~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~ 224 (257)
T PRK14246 149 SPASQLSGGQQQRLTIARALA----LKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAF 224 (257)
T ss_pred CCcccCCHHHHHHHHHHHHHH----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEE
Confidence 467899999999999999997 6889999999999999999999999998876679999999999876 77998865
Q ss_pred e
Q 001073 1144 T 1144 (1163)
Q Consensus 1144 v 1144 (1163)
+
T Consensus 225 l 225 (257)
T PRK14246 225 L 225 (257)
T ss_pred E
Confidence 4
No 340
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.02 E-value=6.4e-10 Score=119.89 Aligned_cols=80 Identities=19% Similarity=0.198 Sum_probs=67.8
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
..++..|||||+++++||.+|+ .+|++++||||++|||+..+..+.++|.... .+.++|++||+...+ ..||++
T Consensus 138 ~~~~~~LS~Gq~qrv~Laral~----~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i 213 (264)
T PRK13546 138 YQPVKKYSSGMRAKLGFSINIT----VNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKI 213 (264)
T ss_pred cCCcccCCHHHHHHHHHHHHHh----hCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEE
Confidence 3467899999999999999887 5889999999999999999999999987753 478999999998764 579988
Q ss_pred eeeeeeCC
Q 001073 1142 FRTKFVDG 1149 (1163)
Q Consensus 1142 ~gv~~~~g 1149 (1163)
+- +.+|
T Consensus 214 ~~--l~~G 219 (264)
T PRK13546 214 AW--IEGG 219 (264)
T ss_pred EE--EECC
Confidence 53 4555
No 341
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.02 E-value=5.3e-10 Score=121.73 Aligned_cols=75 Identities=23% Similarity=0.251 Sum_probs=66.9
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhccceee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVLFR 1143 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~~g 1143 (1163)
..+..|||||+++++||++|+ .+|++++||||+++||+.....+..+|.++..+.++|+|||+.+.. .+||+++-
T Consensus 157 ~~~~~LS~G~~qrv~laral~----~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~ 232 (265)
T PRK14252 157 DLAFNLSGGQQQRLCIARALA----TDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAY 232 (265)
T ss_pred CCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEE
Confidence 457899999999999999998 5889999999999999999999999998876678999999998765 67998854
No 342
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.02 E-value=5.2e-10 Score=135.85 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=70.4
Q ss_pred cccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeee
Q 001073 1066 SLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTK 1145 (1163)
Q Consensus 1066 ~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~ 1145 (1163)
....||||||||++||++|+ .+||++||||||++||+.++..+.+.|....++.++|+|||++.++..||+++-
T Consensus 448 ~g~~LSgGq~qRi~lARall----~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~-- 521 (569)
T PRK10789 448 RGVMLSGGQKQRISIARALL----LNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILV-- 521 (569)
T ss_pred CCCcCCHHHHHHHHHHHHHh----cCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEE--
Confidence 35689999999999999997 788999999999999999999999999887778899999999999999999865
Q ss_pred eeCC
Q 001073 1146 FVDG 1149 (1163)
Q Consensus 1146 ~~~g 1149 (1163)
|.+|
T Consensus 522 l~~G 525 (569)
T PRK10789 522 MQHG 525 (569)
T ss_pred EeCC
Confidence 4455
No 343
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.02 E-value=5e-10 Score=139.50 Aligned_cols=76 Identities=24% Similarity=0.347 Sum_probs=68.0
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKF 1146 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~ 1146 (1163)
...||||||||++||++|. .+||++||||||++||+.++..+.+.|... +.++|+||||+.++..||+++- |
T Consensus 586 G~~LSGGQrQRialARAll----~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iiv--l 657 (686)
T TIGR03797 586 GGTLSGGQRQRLLIARALV----RKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYV--L 657 (686)
T ss_pred CCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEE--E
Confidence 4679999999999999986 788999999999999999999999998876 4699999999999999999965 4
Q ss_pred eCCc
Q 001073 1147 VDGV 1150 (1163)
Q Consensus 1147 ~~g~ 1150 (1163)
.+|.
T Consensus 658 ~~G~ 661 (686)
T TIGR03797 658 DAGR 661 (686)
T ss_pred ECCE
Confidence 5663
No 344
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.02 E-value=5.9e-10 Score=120.96 Aligned_cols=77 Identities=21% Similarity=0.218 Sum_probs=67.1
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~-~~~a~~ 1140 (1163)
.+.+..|||||+++++||++|+ .+|+++|||||+++||+.+...+.++|.++. .+.++|+|||++.. ...||+
T Consensus 145 ~~~~~~LSgGq~qrv~laral~----~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~ 220 (261)
T PRK14258 145 HKSALDLSGGQQQRLCIARALA----VKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDF 220 (261)
T ss_pred cCCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCE
Confidence 3567899999999999999997 6889999999999999999999999998753 47899999999876 467998
Q ss_pred eeee
Q 001073 1141 LFRT 1144 (1163)
Q Consensus 1141 ~~gv 1144 (1163)
++-+
T Consensus 221 i~~l 224 (261)
T PRK14258 221 TAFF 224 (261)
T ss_pred EEEE
Confidence 8653
No 345
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.02 E-value=5e-10 Score=135.97 Aligned_cols=79 Identities=22% Similarity=0.352 Sum_probs=70.9
Q ss_pred cccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeee
Q 001073 1066 SLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTK 1145 (1163)
Q Consensus 1066 ~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~ 1145 (1163)
....||||||||++||+++. .+||++||||||++||+.++..+.+.|....++.++|+||||+.++..||+++-
T Consensus 472 ~g~~LSgGqrqRialARall----~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~-- 545 (574)
T PRK11160 472 GGRQLSGGEQRRLGIARALL----HDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICV-- 545 (574)
T ss_pred CCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEE--
Confidence 35689999999999999987 788999999999999999999999999888778999999999999999999965
Q ss_pred eeCCc
Q 001073 1146 FVDGV 1150 (1163)
Q Consensus 1146 ~~~g~ 1150 (1163)
|.+|.
T Consensus 546 l~~G~ 550 (574)
T PRK11160 546 MDNGQ 550 (574)
T ss_pred EeCCe
Confidence 44553
No 346
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.02 E-value=3.7e-10 Score=137.99 Aligned_cols=79 Identities=23% Similarity=0.362 Sum_probs=71.8
Q ss_pred cccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeee
Q 001073 1066 SLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTK 1145 (1163)
Q Consensus 1066 ~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~ 1145 (1163)
.-.+||||||||+|||+++- ++|++++|||.|++||...++.+-+.|.....+.++|+|+||..|+..||.|+=
T Consensus 1123 rG~QLSGGQKQRIAIARAil----RnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~V-- 1196 (1228)
T KOG0055|consen 1123 RGVQLSGGQKQRIAIARAIL----RNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAV-- 1196 (1228)
T ss_pred ccCcCCchHHHHHHHHHHHH----cCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEE--
Confidence 35699999999999999986 788999999999999999999999999999999999999999999999999964
Q ss_pred eeCCc
Q 001073 1146 FVDGV 1150 (1163)
Q Consensus 1146 ~~~g~ 1150 (1163)
+.+|+
T Consensus 1197 i~~G~ 1201 (1228)
T KOG0055|consen 1197 LKNGK 1201 (1228)
T ss_pred EECCE
Confidence 34553
No 347
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.01 E-value=8.8e-10 Score=115.02 Aligned_cols=75 Identities=23% Similarity=0.291 Sum_probs=64.6
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHH-HHhhhC-CCCeEEEEEeCcchhhhcccee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGR-MIKTHF-PHSQFIVVSLKEGMFNNANVLF 1142 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~-~l~~~~-~~~q~i~it~~~~~~~~a~~~~ 1142 (1163)
..+..|||||+++++||++|+ .+|++++||||+++||+.+...+.. ++.... .+..+|++||++..+..||+++
T Consensus 123 ~~~~~lS~G~~qrv~laral~----~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~ 198 (204)
T cd03250 123 EKGINLSGGQKQRISLARAVY----SDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIV 198 (204)
T ss_pred CCCCcCCHHHHHHHHHHHHHh----cCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEE
Confidence 357789999999999999998 5889999999999999999988887 455553 4689999999998877799875
Q ss_pred e
Q 001073 1143 R 1143 (1163)
Q Consensus 1143 g 1143 (1163)
-
T Consensus 199 ~ 199 (204)
T cd03250 199 V 199 (204)
T ss_pred E
Confidence 4
No 348
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.01 E-value=4.7e-10 Score=133.95 Aligned_cols=78 Identities=18% Similarity=0.169 Sum_probs=67.9
Q ss_pred cccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcch-hhhcc
Q 001073 1062 VWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGM-FNNAN 1139 (1163)
Q Consensus 1062 ~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~-~~~a~ 1139 (1163)
...+++..||||||++++||.+|+ .+|++++|||||++||+.++..+.++|.+.. .+..+|+|||+.+. ...||
T Consensus 128 ~~~~~~~~LSgG~~qrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d 203 (490)
T PRK10938 128 LLDRRFKYLSTGETRKTLLCQALM----SEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQ 203 (490)
T ss_pred hhhCCcccCCHHHHHHHHHHHHHH----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCC
Confidence 345679999999999999999998 5789999999999999999999999998764 46789999999875 45699
Q ss_pred ceee
Q 001073 1140 VLFR 1143 (1163)
Q Consensus 1140 ~~~g 1143 (1163)
+++-
T Consensus 204 ~v~~ 207 (490)
T PRK10938 204 FAGV 207 (490)
T ss_pred EEEE
Confidence 8864
No 349
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.01 E-value=3.6e-10 Score=116.14 Aligned_cols=82 Identities=26% Similarity=0.298 Sum_probs=69.0
Q ss_pred hhhccc-cccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCc
Q 001073 1056 CVAFGG-VWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKE 1132 (1163)
Q Consensus 1056 ~~~~~~-~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~ 1132 (1163)
.|+++. ...+.++.|||||+||++||++||+ .|.|+++|||+++||..-...+.++|.++. .+..|++|||+.
T Consensus 95 ~Vgl~~~~~~ryPhelSGGQrQRi~IARALal----~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL 170 (268)
T COG4608 95 KVGLPEEFLYRYPHELSGGQRQRIGIARALAL----NPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDL 170 (268)
T ss_pred HhCCCHHHhhcCCcccCchhhhhHHHHHHHhh----CCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEH
Confidence 344443 3457899999999999999999996 669999999999999999999999998754 478999999999
Q ss_pred chhhh-ccce
Q 001073 1133 GMFNN-ANVL 1141 (1163)
Q Consensus 1133 ~~~~~-a~~~ 1141 (1163)
.+..+ ||++
T Consensus 171 ~vv~~isdri 180 (268)
T COG4608 171 SVVRYISDRI 180 (268)
T ss_pred HhhhhhcccE
Confidence 88665 7766
No 350
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.01 E-value=2.4e-10 Score=113.79 Aligned_cols=71 Identities=39% Similarity=0.407 Sum_probs=54.1
Q ss_pred EEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEEEEE
Q 001073 5 EICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIVF 83 (1163)
Q Consensus 5 ~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~~~~ 83 (1163)
.|.+.||++|...+.++.+++++++|+|||||||||++++|+|+++...+...|.+. .+.+...+.++++|
T Consensus 1 ~i~~~~~~~~~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~ 71 (162)
T cd03227 1 KIVLGRFPSYFVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSG--------VKAGCIVAAVSAEL 71 (162)
T ss_pred CceeCCCCEEEeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCc--------ccCCCcceeeEEEE
Confidence 367899999998888865556699999999999999999999999987766666221 12344455666554
No 351
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.01 E-value=8.5e-10 Score=118.14 Aligned_cols=77 Identities=23% Similarity=0.405 Sum_probs=67.1
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhh-hccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFN-NANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~-~a~~~ 1141 (1163)
...+..|||||+++++||++|+ .+|++++||||+++||+.++..+..+|.+.. .+..+|+|||+..... .||++
T Consensus 134 ~~~~~~LS~G~~qrv~laral~----~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i 209 (255)
T cd03236 134 DRNIDQLSGGELQRVAIAAALA----RDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYI 209 (255)
T ss_pred cCChhhCCHHHHHHHHHHHHHH----hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence 3567899999999999999998 5779999999999999999999999998764 3678999999988665 69988
Q ss_pred eee
Q 001073 1142 FRT 1144 (1163)
Q Consensus 1142 ~gv 1144 (1163)
+-+
T Consensus 210 ~~l 212 (255)
T cd03236 210 HCL 212 (255)
T ss_pred EEE
Confidence 654
No 352
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.01 E-value=4.5e-10 Score=134.27 Aligned_cols=80 Identities=21% Similarity=0.314 Sum_probs=69.0
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
.+++..||||||++++||.+|+ .+|+++||||||+|||+.++..+.++|.++. .+..+|+|||++..+ .+||++
T Consensus 398 ~~~~~~LSgG~kqrl~la~al~----~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i 473 (510)
T PRK15439 398 EQAARTLSGGNQQKVLIAKCLE----ASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRV 473 (510)
T ss_pred cCccccCCcHHHHHHHHHHHHh----hCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE
Confidence 3568899999999999999998 5789999999999999999999999998764 468899999998765 569998
Q ss_pred eeeeeeCC
Q 001073 1142 FRTKFVDG 1149 (1163)
Q Consensus 1142 ~gv~~~~g 1149 (1163)
|-+ .+|
T Consensus 474 ~~l--~~G 479 (510)
T PRK15439 474 LVM--HQG 479 (510)
T ss_pred EEE--ECC
Confidence 653 455
No 353
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.01 E-value=4.5e-10 Score=119.10 Aligned_cols=90 Identities=26% Similarity=0.349 Sum_probs=74.2
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchh-hhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~-~~a~~ 1140 (1163)
+..|++|||||||++.||.++| +.|.++|-||||.+||..-...|.++|+++. -+.-+++|||+..+. ..||+
T Consensus 152 ~~yPHeLSGGqRQRVMIAMALa----n~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADr 227 (534)
T COG4172 152 DAYPHELSGGQRQRVMIAMALA----NEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADR 227 (534)
T ss_pred hhCCcccCcchhhHHHHHHHHc----CCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhh
Confidence 4679999999999999998887 7889999999999999998899999998864 467899999999875 45999
Q ss_pred eeeeeeeCCceEEEEeecccc
Q 001073 1141 LFRTKFVDGVSTVQRTVATKQ 1161 (1163)
Q Consensus 1141 ~~gv~~~~g~S~v~~~~~~~~ 1161 (1163)
+|- |..| .|++...|++
T Consensus 228 V~V--M~~G--~ivE~~~t~~ 244 (534)
T COG4172 228 VYV--MQHG--EIVETGTTET 244 (534)
T ss_pred EEE--Eecc--EEeecCcHHH
Confidence 875 5555 3555555543
No 354
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.01 E-value=8.3e-10 Score=107.09 Aligned_cols=94 Identities=21% Similarity=0.292 Sum_probs=76.7
Q ss_pred hhhhhccccccccccccChHHHHHHHHHHHHHH-hccCCCC-EEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEe
Q 001073 1054 EVCVAFGGVWKQSLSELSGGQRSLLALSLILAL-LLFKPAP-LYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSL 1130 (1163)
Q Consensus 1054 ~~~~~~~~~~~~~~~~lSgGek~~~~ia~~lal-~~~~~~p-~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~ 1130 (1163)
.-.+...+...+....|||||+||+.+|++||- |...|.| .++|||||++||......++++.+.++ .+.-++.|-|
T Consensus 120 la~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLH 199 (259)
T COG4559 120 LAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLH 199 (259)
T ss_pred HHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 334444555556788999999999999999995 6666667 999999999999999999999999875 4678999999
Q ss_pred Ccch-hhhccceeeeeeeCC
Q 001073 1131 KEGM-FNNANVLFRTKFVDG 1149 (1163)
Q Consensus 1131 ~~~~-~~~a~~~~gv~~~~g 1149 (1163)
+.++ -.+||+|+- |.+|
T Consensus 200 DLNLAA~YaDrivl--l~~G 217 (259)
T COG4559 200 DLNLAAQYADRIVL--LHQG 217 (259)
T ss_pred cchHHHHhhheeee--eeCC
Confidence 9886 667999953 4554
No 355
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.01 E-value=4.6e-10 Score=135.19 Aligned_cols=81 Identities=21% Similarity=0.289 Sum_probs=69.7
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~-~~~a~~ 1140 (1163)
.+.+..||||||++++||.+|+ .+|++++|||||++||+.....+.++|.++. .+.++|+|||+.+. ..+||+
T Consensus 151 ~~~~~~LSgGe~qrv~iAraL~----~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dr 226 (529)
T PRK15134 151 TDYPHQLSGGERQRVMIAMALL----TRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADR 226 (529)
T ss_pred hhCCcccCHHHHHHHHHHHHHh----cCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCE
Confidence 4578999999999999999998 5889999999999999999999999998864 36789999999876 457999
Q ss_pred eeeeeeeCCc
Q 001073 1141 LFRTKFVDGV 1150 (1163)
Q Consensus 1141 ~~gv~~~~g~ 1150 (1163)
++- |.+|.
T Consensus 227 i~~--l~~G~ 234 (529)
T PRK15134 227 VAV--MQNGR 234 (529)
T ss_pred EEE--EECCE
Confidence 864 44553
No 356
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.00 E-value=4.9e-10 Score=126.57 Aligned_cols=80 Identities=26% Similarity=0.255 Sum_probs=67.7
Q ss_pred cccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcc-hhh
Q 001073 1060 GGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEG-MFN 1136 (1163)
Q Consensus 1060 ~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~-~~~ 1136 (1163)
.+...+.+..|||||+|+++||++|+ .+|++++||||+++||+..+..+...|.... .+.++|++||+.. .+.
T Consensus 140 ~~~~~~~~~~LSgGq~QRVaLARAL~----~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~ 215 (377)
T PRK11607 140 QEFAKRKPHQLSGGQRQRVALARSLA----KRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMT 215 (377)
T ss_pred chhhcCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH
Confidence 33345678999999999999999998 5789999999999999999999888776542 3689999999987 478
Q ss_pred hccceee
Q 001073 1137 NANVLFR 1143 (1163)
Q Consensus 1137 ~a~~~~g 1143 (1163)
.||+++-
T Consensus 216 laDri~v 222 (377)
T PRK11607 216 MAGRIAI 222 (377)
T ss_pred hCCEEEE
Confidence 8998853
No 357
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.00 E-value=9.6e-10 Score=119.34 Aligned_cols=79 Identities=27% Similarity=0.304 Sum_probs=67.0
Q ss_pred cccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHH-hhhCCCCeEEEEEeCcchhhhccceeee
Q 001073 1066 SLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMI-KTHFPHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1066 ~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l-~~~~~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
.+..|||||+++++||++|+ .+|+++|||||+++||+..+..+.+.+ .....+.++|+|||+...+..||+++-
T Consensus 156 ~~~~LSgGq~qrv~lAraL~----~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~- 230 (282)
T cd03291 156 GGITLSGGQRARISLARAVY----KDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI- 230 (282)
T ss_pred CCCcCCHHHHHHHHHHHHHh----cCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEE-
Confidence 46799999999999999987 588999999999999999999888754 455557899999999988888998853
Q ss_pred eeeCCc
Q 001073 1145 KFVDGV 1150 (1163)
Q Consensus 1145 ~~~~g~ 1150 (1163)
|.+|.
T Consensus 231 -l~~G~ 235 (282)
T cd03291 231 -LHEGS 235 (282)
T ss_pred -EECCE
Confidence 45664
No 358
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.99 E-value=7.1e-10 Score=132.57 Aligned_cols=81 Identities=17% Similarity=0.173 Sum_probs=69.2
Q ss_pred cccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hh
Q 001073 1060 GGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NN 1137 (1163)
Q Consensus 1060 ~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~ 1137 (1163)
.....+++..||||||++++||.+|+ .+|++++|||||++||+.++..+.++|.+.. .+..+|+|||+.+.+ .+
T Consensus 132 ~~~~~~~~~~LSgG~~qrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~ 207 (501)
T PRK10762 132 RFSSDKLVGELSIGEQQMVEIAKVLS----FESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEI 207 (501)
T ss_pred CCCccCchhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 33345678999999999999999998 5889999999999999999999999998763 467899999998764 67
Q ss_pred ccceeee
Q 001073 1138 ANVLFRT 1144 (1163)
Q Consensus 1138 a~~~~gv 1144 (1163)
||+++-+
T Consensus 208 ~d~i~~l 214 (501)
T PRK10762 208 CDDVTVF 214 (501)
T ss_pred CCEEEEE
Confidence 9998654
No 359
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=6.5e-10 Score=133.05 Aligned_cols=78 Identities=26% Similarity=0.222 Sum_probs=67.8
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccc
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~ 1140 (1163)
..+.+..||||||++++||.+|+ .+|+++||||||++||+.++..+.++|.+.. .+..+|+|||+...+ ..||+
T Consensus 137 ~~~~~~~LSgGqkqrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~ 212 (506)
T PRK13549 137 PATPVGNLGLGQQQLVEIAKALN----KQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDT 212 (506)
T ss_pred cccchhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCE
Confidence 34678999999999999999998 5889999999999999999999999998763 467899999998764 57998
Q ss_pred eeee
Q 001073 1141 LFRT 1144 (1163)
Q Consensus 1141 ~~gv 1144 (1163)
++-+
T Consensus 213 v~~l 216 (506)
T PRK13549 213 ICVI 216 (506)
T ss_pred EEEE
Confidence 8653
No 360
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.99 E-value=7.2e-10 Score=133.00 Aligned_cols=80 Identities=20% Similarity=0.269 Sum_probs=68.6
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhh-CCCCeEEEEEeCcch-hhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH-FPHSQFIVVSLKEGM-FNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~-~~~~q~i~it~~~~~-~~~a~~~ 1141 (1163)
.+++..||||||++++||.+|+ .+|+++||||||++||+.+...+.++|..+ ..+..+|+|||+... ..+||++
T Consensus 404 ~~~~~~LSgGq~qrv~lAral~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i 479 (510)
T PRK09700 404 NQNITELSGGNQQKVLISKWLC----CCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRI 479 (510)
T ss_pred cCccccCChHHHHHHHHHHHHh----cCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEE
Confidence 3578899999999999999997 578999999999999999999999999875 346789999999765 5679988
Q ss_pred eeeeeeCC
Q 001073 1142 FRTKFVDG 1149 (1163)
Q Consensus 1142 ~gv~~~~g 1149 (1163)
+-+ .+|
T Consensus 480 ~~l--~~G 485 (510)
T PRK09700 480 AVF--CEG 485 (510)
T ss_pred EEE--ECC
Confidence 653 455
No 361
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.99 E-value=8e-10 Score=132.57 Aligned_cols=81 Identities=14% Similarity=0.115 Sum_probs=69.3
Q ss_pred cccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hh
Q 001073 1060 GGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NN 1137 (1163)
Q Consensus 1060 ~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~ 1137 (1163)
.....+++..||||||++++||.+|+ .+|+++||||||++||+.++..+.++|.+.. .+..+|+|||+...+ ..
T Consensus 136 ~~~~~~~~~~LSgG~~qrv~ia~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~ 211 (510)
T PRK09700 136 KVDLDEKVANLSISHKQMLEIAKTLM----LDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRI 211 (510)
T ss_pred CCCcccchhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 33345678999999999999999998 5889999999999999999999999998764 467899999998765 57
Q ss_pred ccceeee
Q 001073 1138 ANVLFRT 1144 (1163)
Q Consensus 1138 a~~~~gv 1144 (1163)
||+++-+
T Consensus 212 ~d~v~~l 218 (510)
T PRK09700 212 CDRYTVM 218 (510)
T ss_pred CCEEEEE
Confidence 9988654
No 362
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.99 E-value=8.2e-10 Score=132.04 Aligned_cols=78 Identities=19% Similarity=0.169 Sum_probs=68.0
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcch-hhhccc
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~-~~~a~~ 1140 (1163)
..+++..||||||++++||++|+ .+|++++|||||++||+.++..+.++|.++. .+..+|++||+.+. ...||+
T Consensus 134 ~~~~~~~LSgG~~qrv~la~aL~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~ 209 (510)
T PRK15439 134 LDSSAGSLEVADRQIVEILRGLM----RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADR 209 (510)
T ss_pred ccCChhhCCHHHHHHHHHHHHHH----cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE
Confidence 34678999999999999999998 5889999999999999999999999998764 46789999999876 467999
Q ss_pred eeee
Q 001073 1141 LFRT 1144 (1163)
Q Consensus 1141 ~~gv 1144 (1163)
++-+
T Consensus 210 i~~l 213 (510)
T PRK15439 210 ISVM 213 (510)
T ss_pred EEEE
Confidence 8653
No 363
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.99 E-value=7.2e-10 Score=132.52 Aligned_cols=80 Identities=21% Similarity=0.242 Sum_probs=69.3
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
.+++..||||||++++||.+|+ .+|+++||||||+|||+.++..+.++|.++. .+..+|++||+...+ .+||++
T Consensus 391 ~~~~~~LSgGq~qrl~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i 466 (501)
T PRK11288 391 EQLIMNLSGGNQQKAILGRWLS----EDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRI 466 (501)
T ss_pred cCccccCCHHHHHHHHHHHHHc----cCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEE
Confidence 3578899999999999999987 6789999999999999999999999998764 467899999998754 679998
Q ss_pred eeeeeeCC
Q 001073 1142 FRTKFVDG 1149 (1163)
Q Consensus 1142 ~gv~~~~g 1149 (1163)
+-+ .+|
T Consensus 467 ~~l--~~g 472 (501)
T PRK11288 467 VVM--REG 472 (501)
T ss_pred EEE--ECC
Confidence 753 455
No 364
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.99 E-value=8.7e-10 Score=119.19 Aligned_cols=75 Identities=23% Similarity=0.246 Sum_probs=65.6
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcch-hhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGM-FNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~-~~~a~~~~ 1142 (1163)
..++..|||||+++++||++|+ .+|++++||||++|||+.+...+..+|.+...++++|++||+... ...+|+++
T Consensus 141 ~~~~~~LS~Gq~qrv~laral~----~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~ 216 (250)
T PRK14266 141 DKSALGLSGGQQQRLCIARTIA----VSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTS 216 (250)
T ss_pred hCCcccCCHHHHHHHHHHHHHH----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEE
Confidence 3567899999999999999998 578999999999999999999999999887667899999999874 55577664
No 365
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.99 E-value=7.6e-10 Score=132.09 Aligned_cols=76 Identities=16% Similarity=0.204 Sum_probs=66.9
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcch-hhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGM-FNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~-~~~a~~~ 1141 (1163)
.+.+..||||||++++||.+|+ .+|+++||||||++||+..+..+.++|.+.. .+..+|+|||+.+. ..+||++
T Consensus 129 ~~~~~~LSgGq~qrv~lA~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i 204 (491)
T PRK10982 129 RAKVATLSVSQMQMIEIAKAFS----YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEI 204 (491)
T ss_pred cCchhhCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEE
Confidence 4678999999999999999998 5789999999999999999999999998764 46789999999875 4679988
Q ss_pred ee
Q 001073 1142 FR 1143 (1163)
Q Consensus 1142 ~g 1143 (1163)
+-
T Consensus 205 ~~ 206 (491)
T PRK10982 205 TI 206 (491)
T ss_pred EE
Confidence 64
No 366
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.98 E-value=7.6e-10 Score=135.58 Aligned_cols=78 Identities=26% Similarity=0.371 Sum_probs=70.2
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKF 1146 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~ 1146 (1163)
...|||||||+++||+++. .+||+++|||||++||+.++..+.+.|....++.++|+|||++..+..||+++. +
T Consensus 474 g~~LSgGq~Qrl~laRal~----~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~--l 547 (576)
T TIGR02204 474 GVTLSGGQRQRIAIARAIL----KDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVV--M 547 (576)
T ss_pred CCcCCHHHHHHHHHHHHHH----hCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEE--E
Confidence 4579999999999999987 788999999999999999999999999887778999999999999999999965 4
Q ss_pred eCCc
Q 001073 1147 VDGV 1150 (1163)
Q Consensus 1147 ~~g~ 1150 (1163)
.+|.
T Consensus 548 ~~g~ 551 (576)
T TIGR02204 548 DQGR 551 (576)
T ss_pred ECCE
Confidence 4664
No 367
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.98 E-value=6.8e-10 Score=139.06 Aligned_cols=76 Identities=25% Similarity=0.377 Sum_probs=68.0
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKF 1146 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~ 1146 (1163)
...||||||||++||++|. .+||+++|||||++||+.++..+.+.|.. .+.++|+||||+.++..||+++- |
T Consensus 613 G~~LSGGQrQRiaLARall----~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iiv--l 684 (710)
T TIGR03796 613 GANLSGGQRQRLEIARALV----RNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIV--L 684 (710)
T ss_pred CCCCCHHHHHHHHHHHHHh----hCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEE--E
Confidence 4579999999999999996 78899999999999999999999999876 47899999999999999999965 4
Q ss_pred eCCc
Q 001073 1147 VDGV 1150 (1163)
Q Consensus 1147 ~~g~ 1150 (1163)
.+|.
T Consensus 685 ~~G~ 688 (710)
T TIGR03796 685 ERGK 688 (710)
T ss_pred eCCE
Confidence 5553
No 368
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.98 E-value=7.1e-10 Score=138.67 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=69.3
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKF 1146 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~ 1146 (1163)
...||||||||++||++|. .+||++||||||++||+.+...+.+.|... ++.++|+||||+.++..||+++- |
T Consensus 609 G~~LSgGQrQRialARall----~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~--l 681 (708)
T TIGR01193 609 GSSISGGQKQRIALARALL----TDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIV--L 681 (708)
T ss_pred CCCCCHHHHHHHHHHHHHh----hCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEE--E
Confidence 4579999999999999997 788999999999999999999999998875 56899999999999999999965 5
Q ss_pred eCCce
Q 001073 1147 VDGVS 1151 (1163)
Q Consensus 1147 ~~g~S 1151 (1163)
.+|.-
T Consensus 682 ~~G~i 686 (708)
T TIGR01193 682 DHGKI 686 (708)
T ss_pred ECCEE
Confidence 56653
No 369
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.98 E-value=6e-10 Score=134.19 Aligned_cols=81 Identities=23% Similarity=0.308 Sum_probs=69.4
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchh-hhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~-~~a~~ 1140 (1163)
.+++..||||||++++||.+|+ .+|+++||||||++||+.+...+.++|.+.. .+..+|+|||+...+ .+||+
T Consensus 420 ~~~~~~LSgG~~qrv~la~al~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~ 495 (529)
T PRK15134 420 HRYPAEFSGGQRQRIAIARALI----LKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQ 495 (529)
T ss_pred hcCCccCCHHHHHHHHHHHHHh----CCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCe
Confidence 3568899999999999999998 5889999999999999999999999998764 267899999998754 57998
Q ss_pred eeeeeeeCCc
Q 001073 1141 LFRTKFVDGV 1150 (1163)
Q Consensus 1141 ~~gv~~~~g~ 1150 (1163)
++- |.+|.
T Consensus 496 i~~--l~~G~ 503 (529)
T PRK15134 496 VIV--LRQGE 503 (529)
T ss_pred EEE--EECCE
Confidence 865 44663
No 370
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.98 E-value=8e-10 Score=137.72 Aligned_cols=78 Identities=23% Similarity=0.327 Sum_probs=70.3
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKF 1146 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~ 1146 (1163)
...|||||||+++||++|. .+||++||||||++||+.++..+.+.|.+...+.++|+||||+.++..||+++- |
T Consensus 591 g~~LSgGq~qri~lARall----~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~--l 664 (694)
T TIGR01846 591 GANLSGGQRQRIAIARALV----GNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIV--L 664 (694)
T ss_pred CCCCCHHHHHHHHHHHHHH----hCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEE--E
Confidence 4689999999999999997 788999999999999999999999999888778999999999999999999865 4
Q ss_pred eCCc
Q 001073 1147 VDGV 1150 (1163)
Q Consensus 1147 ~~g~ 1150 (1163)
.+|.
T Consensus 665 ~~G~ 668 (694)
T TIGR01846 665 EKGQ 668 (694)
T ss_pred eCCE
Confidence 4553
No 371
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.98 E-value=8.3e-10 Score=132.01 Aligned_cols=80 Identities=25% Similarity=0.325 Sum_probs=68.5
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcch-hhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGM-FNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~-~~~a~~~ 1141 (1163)
.+.+..||||||++++||.+|+ .+|+++||||||++||+.++..+.++|.+.. .+..+|+|||+... ...||++
T Consensus 135 ~~~~~~LSgGq~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i 210 (501)
T PRK11288 135 DTPLKYLSIGQRQMVEIAKALA----RNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAI 210 (501)
T ss_pred CCchhhCCHHHHHHHHHHHHHH----hCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 4578899999999999999998 5889999999999999999999999998764 46789999999875 4669988
Q ss_pred eeeeeeCC
Q 001073 1142 FRTKFVDG 1149 (1163)
Q Consensus 1142 ~gv~~~~g 1149 (1163)
+- |.+|
T Consensus 211 ~~--l~~G 216 (501)
T PRK11288 211 TV--FKDG 216 (501)
T ss_pred EE--EECC
Confidence 64 3444
No 372
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.97 E-value=1.1e-09 Score=132.60 Aligned_cols=79 Identities=27% Similarity=0.361 Sum_probs=70.0
Q ss_pred cccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhccceeee
Q 001073 1066 SLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1066 ~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
....||||||||++||+++. .+||+++|||||++||+.++..+.+.|.... .+.++|+|||++.++..||+++-
T Consensus 451 ~g~~LSgGq~qrl~lARall----~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~- 525 (544)
T TIGR01842 451 GGATLSGGQRQRIALARALY----GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILV- 525 (544)
T ss_pred CcCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEE-
Confidence 45789999999999999986 7889999999999999999999999998764 57899999999999999999865
Q ss_pred eeeCCc
Q 001073 1145 KFVDGV 1150 (1163)
Q Consensus 1145 ~~~~g~ 1150 (1163)
+.+|.
T Consensus 526 -l~~G~ 530 (544)
T TIGR01842 526 -LQDGR 530 (544)
T ss_pred -EECCE
Confidence 45663
No 373
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.97 E-value=1.3e-09 Score=131.86 Aligned_cols=77 Identities=26% Similarity=0.334 Sum_probs=67.3
Q ss_pred cccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchhhhccceeeee
Q 001073 1068 SELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMFNNANVLFRTK 1145 (1163)
Q Consensus 1068 ~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~~~a~~~~gv~ 1145 (1163)
..||||||||++||++|. .+||+++|||||++||+.++..+.+.+.... .+.++|+||||+.++..||+++-
T Consensus 448 ~~LSgGq~qRl~lARal~----~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~-- 521 (547)
T PRK10522 448 LKLSKGQKKRLALLLALA----EERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLE-- 521 (547)
T ss_pred CCCCHHHHHHHHHHHHHh----cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEE--
Confidence 589999999999999987 7889999999999999999999988876532 47899999999999999999865
Q ss_pred eeCCc
Q 001073 1146 FVDGV 1150 (1163)
Q Consensus 1146 ~~~g~ 1150 (1163)
+.+|.
T Consensus 522 l~~G~ 526 (547)
T PRK10522 522 MRNGQ 526 (547)
T ss_pred EECCE
Confidence 45653
No 374
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=9.1e-10 Score=131.81 Aligned_cols=81 Identities=21% Similarity=0.299 Sum_probs=69.4
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcch-hhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGM-FNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~-~~~a~~~ 1141 (1163)
.+++..||||||++++||++|+ .+|+++||||||++||+.++..+.++|..+. .+..+|+|||+... ..+||++
T Consensus 400 ~~~~~~LSgG~kqrv~lA~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v 475 (506)
T PRK13549 400 ELAIARLSGGNQQKAVLAKCLL----LNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRV 475 (506)
T ss_pred ccccccCCHHHHHHHHHHHHHh----hCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEE
Confidence 3568899999999999999998 5789999999999999999999999998763 47789999999875 5679988
Q ss_pred eeeeeeCCc
Q 001073 1142 FRTKFVDGV 1150 (1163)
Q Consensus 1142 ~gv~~~~g~ 1150 (1163)
+- |.+|.
T Consensus 476 ~~--l~~G~ 482 (506)
T PRK13549 476 LV--MHEGK 482 (506)
T ss_pred EE--EECCE
Confidence 64 55664
No 375
>PRK03918 chromosome segregation protein; Provisional
Probab=98.97 E-value=0.00076 Score=87.56 Aligned_cols=138 Identities=28% Similarity=0.396 Sum_probs=105.7
Q ss_pred HHHHHHhhhhHHhHHhhhcCCccccccCCCCCcccccchhhhhccccccccccccChHHHHHHHHHHHHHH--hccCCCC
Q 001073 1016 KVTWVKVNKDFGSIFSTLLPGTMAKLEPPEGGNFLDGLEVCVAFGGVWKQSLSELSGGQRSLLALSLILAL--LLFKPAP 1093 (1163)
Q Consensus 1016 ~~~~~~~~~~f~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgGek~~~~ia~~lal--~~~~~~p 1093 (1163)
..++..|+..|..+|..+.++....+....+ + ..+.+.+..+|. ..++..|||||+++++||+.+|+ +.+.+||
T Consensus 739 ~~~~~~l~~~~~~if~~l~~~~~~~~~l~~~-~--~~~~i~~l~~g~-~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~ 814 (880)
T PRK03918 739 ERALSKVGEIASEIFEELTEGKYSGVRVKAE-E--NKVKLFVVYQGK-ERPLTFLSGGERIALGLAFRLALSLYLAGNIP 814 (880)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEEEecC-C--CceEEEEeCCCC-cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCC
Confidence 3456677888888999887654433222111 1 112222223343 46789999999999999976554 4567899
Q ss_pred EEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhccceeeeeeeCCceEEEEee
Q 001073 1094 LYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTV 1157 (1163)
Q Consensus 1094 ~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~~~gv~~~~g~S~v~~~~ 1157 (1163)
|+|||||+++||+.++..+.++|.... .++|+|+|||++.++..||++|.|++.+|+|.|..+|
T Consensus 815 ~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l~~~~~~s~~~~~~ 879 (880)
T PRK03918 815 LLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRVSLEGGVSKVEVVS 879 (880)
T ss_pred eEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEEEecCCeeEEEecc
Confidence 999999999999999999999987754 4689999999999999999999999999999998875
No 376
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.97 E-value=9.2e-10 Score=131.82 Aligned_cols=80 Identities=23% Similarity=0.282 Sum_probs=68.6
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhcccee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANVLF 1142 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~~~ 1142 (1163)
+++..||||||++++||++|+ .+|+++||||||++||+.++..+.++|..+. .+..+|++||+...+ .+||+++
T Consensus 399 ~~~~~LSgGqkqrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~ 474 (500)
T TIGR02633 399 LPIGRLSGGNQQKAVLAKMLL----TNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVL 474 (500)
T ss_pred CccccCCHHHHHHHHHHHHHh----hCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE
Confidence 567899999999999999998 5789999999999999999999999998763 467899999998754 6799987
Q ss_pred eeeeeCCc
Q 001073 1143 RTKFVDGV 1150 (1163)
Q Consensus 1143 gv~~~~g~ 1150 (1163)
-+ .+|.
T Consensus 475 ~l--~~G~ 480 (500)
T TIGR02633 475 VI--GEGK 480 (500)
T ss_pred EE--ECCE
Confidence 53 4553
No 377
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.97 E-value=1.2e-09 Score=135.95 Aligned_cols=75 Identities=24% Similarity=0.356 Sum_probs=65.5
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKF 1146 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~ 1146 (1163)
...||||||||++||+++. .+||++||||||++||+.+...+.+ . ...++.++|+||||+.++..||+++- +
T Consensus 615 G~~LSGGQkQRlalARALl----~~p~ILILDEpTSaLD~~te~~i~~-~-~~~~~~TvIiItHrl~~i~~aD~Iiv--L 686 (711)
T TIGR00958 615 GSQLSGGQKQRIAIARALV----RKPRVLILDEATSALDAECEQLLQE-S-RSRASRTVLLIAHRLSTVERADQILV--L 686 (711)
T ss_pred CCcCCHHHHHHHHHHHHHh----cCCCEEEEEccccccCHHHHHHHHH-h-hccCCCeEEEEeccHHHHHhCCEEEE--E
Confidence 4579999999999999986 7889999999999999999988887 2 23467899999999999999999965 4
Q ss_pred eCC
Q 001073 1147 VDG 1149 (1163)
Q Consensus 1147 ~~g 1149 (1163)
.+|
T Consensus 687 ~~G 689 (711)
T TIGR00958 687 KKG 689 (711)
T ss_pred ECC
Confidence 566
No 378
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.96 E-value=1.3e-09 Score=113.08 Aligned_cols=80 Identities=19% Similarity=0.274 Sum_probs=64.8
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEe-Cc-chhhhcc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSL-KE-GMFNNAN 1139 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~-~~-~~~~~a~ 1139 (1163)
...+..|||||+++++||++|+ .+|+++|||||+++||+..+..+.++|.+... ++++||+|| .. .+...||
T Consensus 113 ~~~~~~LS~Ge~qrl~laral~----~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d 188 (202)
T cd03233 113 NEFVRGISGGERKRVSIAEALV----SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFD 188 (202)
T ss_pred ccchhhCCHHHHHHHHHHHHHh----hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCC
Confidence 4568899999999999999998 57899999999999999999999999988643 456666655 43 5667899
Q ss_pred ceeeeeeeCC
Q 001073 1140 VLFRTKFVDG 1149 (1163)
Q Consensus 1140 ~~~gv~~~~g 1149 (1163)
+++-+ .+|
T Consensus 189 ~i~~l--~~G 196 (202)
T cd03233 189 KVLVL--YEG 196 (202)
T ss_pred eEEEE--ECC
Confidence 88653 455
No 379
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.96 E-value=1.2e-09 Score=132.20 Aligned_cols=78 Identities=22% Similarity=0.295 Sum_probs=67.1
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHH-hhh-CCCCeEEEEEeCcchhhhccceeee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMI-KTH-FPHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l-~~~-~~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
...||||||||++||+++. .+||++||||||++||+.++..+.+.+ ... ..+.++|+||||+.++..||+++-
T Consensus 468 ~~~LSgGq~qRlalaRall----~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~- 542 (555)
T TIGR01194 468 TTALSTGQQKRLALICAWL----EDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIK- 542 (555)
T ss_pred cccCCHHHHHHHHHHHHHH----cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEE-
Confidence 4789999999999999987 789999999999999999999998754 333 467899999999999999999965
Q ss_pred eeeCCc
Q 001073 1145 KFVDGV 1150 (1163)
Q Consensus 1145 ~~~~g~ 1150 (1163)
+.+|.
T Consensus 543 -l~~G~ 547 (555)
T TIGR01194 543 -LAAGC 547 (555)
T ss_pred -EECCE
Confidence 44553
No 380
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.96 E-value=8.7e-10 Score=131.70 Aligned_cols=79 Identities=28% Similarity=0.262 Sum_probs=67.3
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC-C-CeEEEEEeCcchhh--hccc
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP-H-SQFIVVSLKEGMFN--NANV 1140 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~-~-~q~i~it~~~~~~~--~a~~ 1140 (1163)
.++..||||||++++||.+|+ .+|++++|||||+|||+.++..+.++|.+... + +++|+|||+...+. +||+
T Consensus 397 ~~~~~LSgGq~qrv~la~al~----~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~ 472 (490)
T PRK10938 397 APFHSLSWGQQRLALIVRALV----KHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHR 472 (490)
T ss_pred CchhhCCHHHHHHHHHHHHHh----cCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhhee
Confidence 568899999999999999997 68899999999999999999999999988643 3 56999999998764 4787
Q ss_pred eeeeeeeCC
Q 001073 1141 LFRTKFVDG 1149 (1163)
Q Consensus 1141 ~~gv~~~~g 1149 (1163)
++- |.+|
T Consensus 473 v~~--l~~G 479 (490)
T PRK10938 473 LEF--VPDG 479 (490)
T ss_pred EEE--ecCC
Confidence 754 4566
No 381
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.96 E-value=1.1e-09 Score=133.70 Aligned_cols=79 Identities=27% Similarity=0.432 Sum_probs=68.3
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~~ 1142 (1163)
.+++..||||||++++||.+|+ .+|+|+||||||++||+.....+.++|... ++.+|+|||+..++ .+||+++
T Consensus 425 ~~~~~~LSgGekqRl~La~~l~----~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~ 498 (638)
T PRK10636 425 TEETRRFSGGEKARLVLALIVW----QRPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLY 498 (638)
T ss_pred cCchhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEE
Confidence 4678999999999999999987 688999999999999999999999999887 35899999998865 4699986
Q ss_pred eeeeeCCc
Q 001073 1143 RTKFVDGV 1150 (1163)
Q Consensus 1143 gv~~~~g~ 1150 (1163)
-+ .+|.
T Consensus 499 ~l--~~G~ 504 (638)
T PRK10636 499 LV--HDGK 504 (638)
T ss_pred EE--ECCE
Confidence 54 3553
No 382
>PRK13409 putative ATPase RIL; Provisional
Probab=98.95 E-value=1.2e-09 Score=131.08 Aligned_cols=75 Identities=27% Similarity=0.414 Sum_probs=66.3
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~~ 1142 (1163)
++.+..|||||+++++||.+|+ .+|++++|||||++||+..+..+.++|..+..+..+|+|||+...+ ..||+++
T Consensus 207 ~~~~~~LSgGe~qrv~ia~al~----~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~ 282 (590)
T PRK13409 207 DRDISELSGGELQRVAIAAALL----RDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVH 282 (590)
T ss_pred cCChhhCCHHHHHHHHHHHHHh----cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence 3578899999999999999987 6889999999999999999999999998875578899999998754 5689874
No 383
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.95 E-value=1.1e-09 Score=130.79 Aligned_cols=77 Identities=17% Similarity=0.277 Sum_probs=67.3
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcch-hhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGM-FNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~-~~~a~~~ 1141 (1163)
.+++..||||||++++||.+|+ .+|+++||||||+|||+.++..+.++|..+. .+..+|++||+... ..+||++
T Consensus 386 ~~~~~~LSgGq~qrv~la~al~----~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v 461 (491)
T PRK10982 386 RTQIGSLSGGNQQKVIIGRWLL----TQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRI 461 (491)
T ss_pred ccccccCCcHHHHHHHHHHHHh----cCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEE
Confidence 3578899999999999999998 6889999999999999999999999998753 47889999999775 4679998
Q ss_pred eee
Q 001073 1142 FRT 1144 (1163)
Q Consensus 1142 ~gv 1144 (1163)
+-+
T Consensus 462 ~~l 464 (491)
T PRK10982 462 LVM 464 (491)
T ss_pred EEE
Confidence 654
No 384
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.95 E-value=1.3e-09 Score=130.31 Aligned_cols=80 Identities=23% Similarity=0.319 Sum_probs=68.6
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcch-hhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGM-FNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~-~~~a~~~ 1141 (1163)
.+++..||||||++++||.+|+ .+|++++|||||++||+.++..+.++|.+.. .+..+|++||+... ..+||++
T Consensus 390 ~~~~~~LSgGekqrv~lA~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v 465 (501)
T PRK10762 390 EQAIGLLSGGNQQKVAIARGLM----TRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRI 465 (501)
T ss_pred cCchhhCCHHHHHHHHHHHHHh----hCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEE
Confidence 3568899999999999999998 5789999999999999999999999998864 46789999999875 5679988
Q ss_pred eeeeeeCC
Q 001073 1142 FRTKFVDG 1149 (1163)
Q Consensus 1142 ~gv~~~~g 1149 (1163)
+- +.+|
T Consensus 466 ~~--l~~G 471 (501)
T PRK10762 466 LV--MHEG 471 (501)
T ss_pred EE--EECC
Confidence 64 3455
No 385
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.95 E-value=9.9e-10 Score=134.08 Aligned_cols=76 Identities=24% Similarity=0.312 Sum_probs=67.4
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-C-CCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-P-HSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~-~~q~i~it~~~~~-~~~a~~ 1140 (1163)
.+.+..|||||||+++||.+|+ ..|+++||||||++||+.....+.++|..+. . +..+|+|||+... ...||+
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~----~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adr 238 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALS----CRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADR 238 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHh----CCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCE
Confidence 4678999999999999999998 5779999999999999999999999998864 3 6789999999876 467999
Q ss_pred eee
Q 001073 1141 LFR 1143 (1163)
Q Consensus 1141 ~~g 1143 (1163)
++-
T Consensus 239 i~v 241 (623)
T PRK10261 239 VLV 241 (623)
T ss_pred EEE
Confidence 854
No 386
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.94 E-value=1.3e-09 Score=133.16 Aligned_cols=80 Identities=23% Similarity=0.203 Sum_probs=68.8
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcch-hhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGM-FNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~-~~~a~~ 1140 (1163)
.+.+..|||||||+++||++|+ ..|+++||||||++||+.+...+.++|.++. .+..+|+|||+.+. ..+||+
T Consensus 458 ~~~~~~LSgGqrQRv~iAraL~----~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dr 533 (623)
T PRK10261 458 WRYPHEFSGGQRQRICIARALA----LNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHR 533 (623)
T ss_pred hCCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 3568899999999999999998 5789999999999999999999999998764 36889999999876 456998
Q ss_pred eeeeeeeCC
Q 001073 1141 LFRTKFVDG 1149 (1163)
Q Consensus 1141 ~~gv~~~~g 1149 (1163)
++- |.+|
T Consensus 534 i~v--l~~G 540 (623)
T PRK10261 534 VAV--MYLG 540 (623)
T ss_pred EEE--EECC
Confidence 864 4455
No 387
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.94 E-value=1.2e-09 Score=131.37 Aligned_cols=81 Identities=26% Similarity=0.310 Sum_probs=69.3
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchh-hhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~-~~a~~ 1140 (1163)
.+++..||||||++++||.+|+ .+|+++||||||++||+.++..+.++|.+.. .+..+|+|||+...+ .+||+
T Consensus 422 ~~~~~~LSgGq~qrv~laral~----~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~ 497 (520)
T TIGR03269 422 DKYPDELSEGERHRVALAQVLI----KEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDR 497 (520)
T ss_pred hCChhhCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCE
Confidence 3568899999999999999987 5789999999999999999999999998764 268899999998765 56999
Q ss_pred eeeeeeeCCc
Q 001073 1141 LFRTKFVDGV 1150 (1163)
Q Consensus 1141 ~~gv~~~~g~ 1150 (1163)
++- |.+|.
T Consensus 498 i~~--l~~G~ 505 (520)
T TIGR03269 498 AAL--MRDGK 505 (520)
T ss_pred EEE--EECCE
Confidence 865 45664
No 388
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.93 E-value=1.1e-09 Score=118.30 Aligned_cols=80 Identities=24% Similarity=0.282 Sum_probs=67.4
Q ss_pred hccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCc-ch
Q 001073 1058 AFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKE-GM 1134 (1163)
Q Consensus 1058 ~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~-~~ 1134 (1163)
...+..++.|.+||||||||||||+++. ..|++++||||.++||+.-+..+-..|+.+. -+.++|.+||+. +-
T Consensus 122 ~l~~lL~r~P~~LSGGQrQRVAlaRAlV----r~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EA 197 (338)
T COG3839 122 GLEHLLNRKPLQLSGGQRQRVALARALV----RKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEA 197 (338)
T ss_pred CChhHHhcCcccCChhhHHHHHHHHHHh----cCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHH
Confidence 3445556789999999999999999997 6789999999999999988887777776642 368999999994 67
Q ss_pred hhhccce
Q 001073 1135 FNNANVL 1141 (1163)
Q Consensus 1135 ~~~a~~~ 1141 (1163)
|..||++
T Consensus 198 mtladri 204 (338)
T COG3839 198 MTLADRI 204 (338)
T ss_pred HhhCCEE
Confidence 9999997
No 389
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.93 E-value=1.6e-09 Score=129.83 Aligned_cols=79 Identities=24% Similarity=0.324 Sum_probs=67.9
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhcccee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANVLF 1142 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~~~ 1142 (1163)
+++..||||||++++||.+|+ .+|++++|||||++||+.++..+.++|.++. .+..+|+|||+.+.+ ..||+++
T Consensus 137 ~~~~~LSgG~~qrv~iA~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~ 212 (500)
T TIGR02633 137 RPVGDYGGGQQQLVEIAKALN----KQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTIC 212 (500)
T ss_pred CchhhCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEE
Confidence 468899999999999999998 5789999999999999999999999998764 467899999998764 5699886
Q ss_pred eeeeeCC
Q 001073 1143 RTKFVDG 1149 (1163)
Q Consensus 1143 gv~~~~g 1149 (1163)
- |.+|
T Consensus 213 ~--l~~G 217 (500)
T TIGR02633 213 V--IRDG 217 (500)
T ss_pred E--EeCC
Confidence 5 3444
No 390
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.92 E-value=1.7e-09 Score=130.82 Aligned_cols=62 Identities=27% Similarity=0.375 Sum_probs=57.7
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCc
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKE 1132 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~ 1132 (1163)
...||||||||++||++|. .+||++||||||++||+.++..+.+.|....++.++|+||||+
T Consensus 468 G~~LSGGQrQRiaiARall----~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 468 GARLSGGERQRLALARALL----ADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred cCcCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 4579999999999999986 7899999999999999999999999998888889999999984
No 391
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.92 E-value=8.6e-10 Score=119.92 Aligned_cols=89 Identities=24% Similarity=0.297 Sum_probs=72.2
Q ss_pred hhhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhh--CCCCeEEEEEeCc-
Q 001073 1056 CVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH--FPHSQFIVVSLKE- 1132 (1163)
Q Consensus 1056 ~~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~--~~~~q~i~it~~~- 1132 (1163)
.|+..+...+.+.+|||||+||+|||++|+ ..|++++||||-++||..-+..+..-|+.. .-+.+||+|||+.
T Consensus 123 lV~L~~~~~R~p~qLSGGQqQRVALARAL~----~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe 198 (352)
T COG3842 123 LVGLEGFADRKPHQLSGGQQQRVALARALV----PEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE 198 (352)
T ss_pred HcCchhhhhhChhhhChHHHHHHHHHHHhh----cCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 345555567889999999999999999998 567899999999999998888877777653 3488999999995
Q ss_pred chhhhccceeeeeeeCCc
Q 001073 1133 GMFNNANVLFRTKFVDGV 1150 (1163)
Q Consensus 1133 ~~~~~a~~~~gv~~~~g~ 1150 (1163)
+-+..||++. -|.+|.
T Consensus 199 EAl~msDrI~--Vm~~G~ 214 (352)
T COG3842 199 EALAMSDRIA--VMNDGR 214 (352)
T ss_pred HHhhhccceE--EccCCc
Confidence 5688999983 355554
No 392
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.92 E-value=1.1e-09 Score=116.08 Aligned_cols=80 Identities=25% Similarity=0.341 Sum_probs=67.0
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchh-hhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~-~~a~~ 1140 (1163)
.+.|+..||||||++|||+++.| .|.|++|||||++||..-...+.++|+.+. .+--|+||||+...+ ..||.
T Consensus 421 ~RYPhEFSGGQRQRIAIARAliL----kP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~ 496 (534)
T COG4172 421 NRYPHEFSGGQRQRIAIARALIL----KPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHR 496 (534)
T ss_pred hcCCcccCcchhhHHHHHHHHhc----CCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhce
Confidence 46799999999999999999986 558999999999999988888999998764 456799999998764 44776
Q ss_pred eeeeeeeCC
Q 001073 1141 LFRTKFVDG 1149 (1163)
Q Consensus 1141 ~~gv~~~~g 1149 (1163)
++ -|.+|
T Consensus 497 vi--Vm~~G 503 (534)
T COG4172 497 VI--VMRDG 503 (534)
T ss_pred EE--EEeCC
Confidence 64 35565
No 393
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.91 E-value=2e-09 Score=131.94 Aligned_cols=72 Identities=19% Similarity=0.349 Sum_probs=65.7
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
...|||||||+++||++|+ .+||++||||||++||+..+..+.+.+.+. +.++|+|||+..++.+||+++-+
T Consensus 580 ~~~LSgGqkQRl~iARal~----~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l 651 (659)
T TIGR00954 580 MDVLSGGEKQRIAMARLFY----HKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYM 651 (659)
T ss_pred ccCCCHHHHHHHHHHHHHH----cCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEE
Confidence 4689999999999999997 688999999999999999999999988764 78999999999999999998754
No 394
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.90 E-value=1.6e-09 Score=109.60 Aligned_cols=88 Identities=20% Similarity=0.266 Sum_probs=73.5
Q ss_pred hhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCC--CeEEEEEeCc-c
Q 001073 1057 VAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPH--SQFIVVSLKE-G 1133 (1163)
Q Consensus 1057 ~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~--~q~i~it~~~-~ 1133 (1163)
++.....++.|..|||||||||||+++|. +.|.+++||||-|+||....+.++-+|..+.+. .-++.|||-. +
T Consensus 116 LGI~hLL~R~P~~LSGGEkQRVAIGRALL----t~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~E 191 (352)
T COG4148 116 LGIEHLLDRYPGTLSGGEKQRVAIGRALL----TAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDE 191 (352)
T ss_pred hCcHHHHhhCCCccCcchhhHHHHHHHHh----cCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHH
Confidence 34445567889999999999999999885 678999999999999999999999999988764 4599999986 4
Q ss_pred hhhhccceeeeeeeCCc
Q 001073 1134 MFNNANVLFRTKFVDGV 1150 (1163)
Q Consensus 1134 ~~~~a~~~~gv~~~~g~ 1150 (1163)
....||++ |.|.+|.
T Consensus 192 v~RLAd~v--V~le~Gk 206 (352)
T COG4148 192 VLRLADRV--VVLENGK 206 (352)
T ss_pred HHhhhheE--EEecCCe
Confidence 67779987 5666764
No 395
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.89 E-value=3.3e-09 Score=119.73 Aligned_cols=82 Identities=26% Similarity=0.293 Sum_probs=71.6
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhh-CCCCeEEEEEeCc-chhhhccc
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH-FPHSQFIVVSLKE-GMFNNANV 1140 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~-~~~~q~i~it~~~-~~~~~a~~ 1140 (1163)
....+..||+||||+++||.+++ ..+.++|||||||+|++..+..++++|+.+ ..+.-+|+||||+ +.++.||+
T Consensus 139 ~~~~v~~LsiaqrQ~VeIArAl~----~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~Dr 214 (500)
T COG1129 139 PDTLVGDLSIAQRQMVEIARALS----FDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADR 214 (500)
T ss_pred hhhhhhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCE
Confidence 45678999999999999999998 477899999999999999999999999987 4688999999996 58999999
Q ss_pred eeeeeeeCCc
Q 001073 1141 LFRTKFVDGV 1150 (1163)
Q Consensus 1141 ~~gv~~~~g~ 1150 (1163)
+. -|.||.
T Consensus 215 it--VlRDG~ 222 (500)
T COG1129 215 IT--VLRDGR 222 (500)
T ss_pred EE--EEeCCE
Confidence 83 245654
No 396
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.89 E-value=2.9e-09 Score=128.75 Aligned_cols=74 Identities=20% Similarity=0.317 Sum_probs=65.7
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~~ 1142 (1163)
.+++..||||||++++||++|+ .+|++++|||||+|||+.++..+.++|.+.. ..+|+|||+...+ ..||+++
T Consensus 438 ~~~~~~LSgGe~qrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~ 511 (552)
T TIGR03719 438 QKKVGQLSGGERNRVHLAKTLK----SGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHIL 511 (552)
T ss_pred cCchhhCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEE
Confidence 4678999999999999999987 5889999999999999999999999998874 3699999998865 4699886
Q ss_pred e
Q 001073 1143 R 1143 (1163)
Q Consensus 1143 g 1143 (1163)
-
T Consensus 512 ~ 512 (552)
T TIGR03719 512 A 512 (552)
T ss_pred E
Confidence 5
No 397
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.89 E-value=3.8e-09 Score=106.06 Aligned_cols=86 Identities=21% Similarity=0.283 Sum_probs=75.4
Q ss_pred hhhhhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeC
Q 001073 1054 EVCVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLK 1131 (1163)
Q Consensus 1054 ~~~~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~ 1131 (1163)
.-.|+....+......||+|++.++-||++|| ..|.+++||||.|||.+.....+..+|.+..+ +..+++|-|+
T Consensus 134 Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa----~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHd 209 (250)
T COG0411 134 LEFVGLGELADRPAGNLSYGQQRRLEIARALA----TQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHD 209 (250)
T ss_pred HHHcCCchhhcchhhcCChhHhHHHHHHHHHh----cCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 34566677777889999999999999999999 57799999999999999999999999998764 4889999999
Q ss_pred cch-hhhccceee
Q 001073 1132 EGM-FNNANVLFR 1143 (1163)
Q Consensus 1132 ~~~-~~~a~~~~g 1143 (1163)
+.+ |..||++|-
T Consensus 210 M~~Vm~l~dri~V 222 (250)
T COG0411 210 MKLVMGLADRIVV 222 (250)
T ss_pred cHHHhhhccEEEe
Confidence 875 889999953
No 398
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.89 E-value=2.9e-09 Score=128.30 Aligned_cols=79 Identities=16% Similarity=0.324 Sum_probs=68.2
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhccce
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
..+++..||||||++++||.+|+ .+|++++|||||++||+.+...+.++|.+. +..+|+|||+...+ ..||++
T Consensus 432 ~~~~~~~LSgGq~qrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i 505 (530)
T PRK15064 432 IKKSVKVLSGGEKGRMLFGKLMM----QKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRI 505 (530)
T ss_pred hcCcccccCHHHHHHHHHHHHHh----cCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEE
Confidence 35679999999999999999998 688999999999999999999999999876 35899999998864 469988
Q ss_pred eeeeeeCC
Q 001073 1142 FRTKFVDG 1149 (1163)
Q Consensus 1142 ~gv~~~~g 1149 (1163)
+-+ .+|
T Consensus 506 ~~l--~~g 511 (530)
T PRK15064 506 IEI--TPD 511 (530)
T ss_pred EEE--ECC
Confidence 653 454
No 399
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.89 E-value=2.7e-09 Score=130.27 Aligned_cols=80 Identities=23% Similarity=0.328 Sum_probs=68.3
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhccce
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
..+++..||||||++++||.+|+ .+|+++||||||++||+..+..+.++|... ++.+|+|||+...+ ..||++
T Consensus 143 ~~~~~~~LSgGerqRv~LA~aL~----~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i 216 (638)
T PRK10636 143 LERPVSDFSGGWRMRLNLAQALI----CRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKI 216 (638)
T ss_pred hcCchhhcCHHHHHHHHHHHHHc----cCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEE
Confidence 34678999999999999999997 688999999999999999999999999876 46899999998764 569988
Q ss_pred eeeeeeCCc
Q 001073 1142 FRTKFVDGV 1150 (1163)
Q Consensus 1142 ~gv~~~~g~ 1150 (1163)
+-+ .+|.
T Consensus 217 ~~L--~~G~ 223 (638)
T PRK10636 217 IHI--EQQS 223 (638)
T ss_pred EEE--eCCE
Confidence 654 4554
No 400
>PF13166 AAA_13: AAA domain
Probab=98.89 E-value=1.5e-06 Score=109.43 Aligned_cols=94 Identities=17% Similarity=0.286 Sum_probs=73.3
Q ss_pred ccccccChHHHHHHHHHHHHHHhc-----cCCCCEEEeecCccCCCHHhHHHHHHHHhhh---CCCCeEEEEEeCcchhh
Q 001073 1065 QSLSELSGGQRSLLALSLILALLL-----FKPAPLYILDEVDAALDLSHTQNIGRMIKTH---FPHSQFIVVSLKEGMFN 1136 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~-----~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~---~~~~q~i~it~~~~~~~ 1136 (1163)
.+...||-|||+.+|+|+-||... +...+++|+|.|-+.||..++..++.+|.+. ....|+||.||+..++.
T Consensus 496 ~~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~~F~~ 575 (712)
T PF13166_consen 496 KPAKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNLYFFK 575 (712)
T ss_pred cccCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcHHHHH
Confidence 456899999999999999999866 1256899999999999999999999999887 67899999999975543
Q ss_pred hc------------cceeeeeeeCCceEEEEeec
Q 001073 1137 NA------------NVLFRTKFVDGVSTVQRTVA 1158 (1163)
Q Consensus 1137 ~a------------~~~~gv~~~~g~S~v~~~~~ 1158 (1163)
.- ..+|.+...++.|.|..+..
T Consensus 576 ~l~~~~~~~~~~~~~~~~~l~~~~~~s~i~~~~~ 609 (712)
T PF13166_consen 576 ELKKWFEEKRKSKKANFYRLEKKGNISSIEKLPK 609 (712)
T ss_pred HHHHHhhhhccccCCeEEEEEecCCccchhhcCC
Confidence 21 12344444456777765544
No 401
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.88 E-value=3.2e-09 Score=131.26 Aligned_cols=78 Identities=22% Similarity=0.284 Sum_probs=68.5
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCC-CCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKP-APLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~-~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~~ 1141 (1163)
.+++.+|||||+|+++||.+|+. .| +++||||||++|||+..+..+..+|..+. .+.++|+|||++..+..||++
T Consensus 482 ~r~~~tLSGGE~QRv~LA~aL~~---~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~v 558 (924)
T TIGR00630 482 SRAAGTLSGGEAQRIRLATQIGS---GLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYV 558 (924)
T ss_pred CCCcCcCCHHHHHHHHHHHHHhh---CCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEE
Confidence 35789999999999999999874 33 47999999999999999999999998864 478999999999999999998
Q ss_pred eee
Q 001073 1142 FRT 1144 (1163)
Q Consensus 1142 ~gv 1144 (1163)
+-+
T Consensus 559 i~L 561 (924)
T TIGR00630 559 IDI 561 (924)
T ss_pred EEe
Confidence 754
No 402
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.87 E-value=3.7e-09 Score=139.33 Aligned_cols=77 Identities=22% Similarity=0.344 Sum_probs=69.4
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchhhhcccee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMFNNANVLF 1142 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~~~a~~~~ 1142 (1163)
.....||||||||++||++|. .+||++||||||++||+.++..+...|.+.. .+.++|+|||+..++..||+++
T Consensus 575 ~~g~~LSGGQkQRiaIARAll----~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Ii 650 (1466)
T PTZ00265 575 SNASKLSGGQKQRISIARAII----RNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIF 650 (1466)
T ss_pred CCCCcCCHHHHHHHHHHHHHh----cCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEE
Confidence 346789999999999999997 6889999999999999999999999998864 4789999999999999999997
Q ss_pred eee
Q 001073 1143 RTK 1145 (1163)
Q Consensus 1143 gv~ 1145 (1163)
-+.
T Consensus 651 vl~ 653 (1466)
T PTZ00265 651 VLS 653 (1466)
T ss_pred EEe
Confidence 654
No 403
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=98.87 E-value=2.6e-09 Score=115.46 Aligned_cols=87 Identities=24% Similarity=0.361 Sum_probs=74.5
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKF 1146 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~ 1146 (1163)
---||||||||||||+.+- +.|.|++|||.|++||..+++.|...|...+.+.+.|+|.||..++-+||-+.-+.
T Consensus 672 GLkLSGGEKQRVAiARtiL----K~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~- 746 (790)
T KOG0056|consen 672 GLKLSGGEKQRVAIARTIL----KAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVIS- 746 (790)
T ss_pred ccccCCcchhhHHHHHHHh----cCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEe-
Confidence 3468999999999999874 78899999999999999999999999999999999999999999999999987643
Q ss_pred eCCceEEEEeeccc
Q 001073 1147 VDGVSTVQRTVATK 1160 (1163)
Q Consensus 1147 ~~g~S~v~~~~~~~ 1160 (1163)
+| +.|.+.+|-+
T Consensus 747 -~G-~IvErG~Hee 758 (790)
T KOG0056|consen 747 -NG-RIVERGRHEE 758 (790)
T ss_pred -CC-eEeecCcHHH
Confidence 55 3444555543
No 404
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.6e-09 Score=114.44 Aligned_cols=85 Identities=25% Similarity=0.373 Sum_probs=73.5
Q ss_pred cccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeeee
Q 001073 1068 SELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKFV 1147 (1163)
Q Consensus 1068 ~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~~ 1147 (1163)
--||||||||+|||+.+- ..||+++|||.|++||...++.+...|...+.+.+.++|.||..++-.||.++- +.
T Consensus 398 lklSggekqrvaiar~il----k~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiiv--l~ 471 (497)
T COG5265 398 LKLSGGEKQRVAIARTIL----KNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIV--LD 471 (497)
T ss_pred eeccCchHHHHHHHHHHh----cCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEE--ee
Confidence 368999999999999885 788999999999999999999999999999999999999999999999999864 44
Q ss_pred CCceEEEEeecc
Q 001073 1148 DGVSTVQRTVAT 1159 (1163)
Q Consensus 1148 ~g~S~v~~~~~~ 1159 (1163)
+|. -|.+.+|-
T Consensus 472 ~g~-i~erg~h~ 482 (497)
T COG5265 472 NGR-IVERGTHE 482 (497)
T ss_pred CCE-EEecCcHH
Confidence 553 34455554
No 405
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.86 E-value=2.8e-09 Score=102.60 Aligned_cols=83 Identities=17% Similarity=0.207 Sum_probs=71.0
Q ss_pred hhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh
Q 001073 1057 VAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF 1135 (1163)
Q Consensus 1057 ~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~ 1135 (1163)
++.....++....+|-|+||+++||.++- +.|.+++||||++|||-...+.+.++|..+. .+..+|+.||-+.-.
T Consensus 121 l~l~~~~~rRv~~~S~G~kqkV~iARAlv----h~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~Ev 196 (245)
T COG4555 121 LQLLEYLDRRVGEFSTGMKQKVAIARALV----HDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEV 196 (245)
T ss_pred hChHHHHHHHHhhhchhhHHHHHHHHHHh----cCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHH
Confidence 33444456789999999999999999885 7889999999999999999999999998764 588999999998766
Q ss_pred h-hccceee
Q 001073 1136 N-NANVLFR 1143 (1163)
Q Consensus 1136 ~-~a~~~~g 1143 (1163)
+ .||+++=
T Consensus 197 ealCDrviv 205 (245)
T COG4555 197 EALCDRVIV 205 (245)
T ss_pred HHhhheEEE
Confidence 6 8999854
No 406
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.86 E-value=4.6e-09 Score=138.42 Aligned_cols=82 Identities=15% Similarity=0.164 Sum_probs=71.2
Q ss_pred hccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-h
Q 001073 1058 AFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-N 1136 (1163)
Q Consensus 1058 ~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~ 1136 (1163)
+..+..++.+..||||||++++||.+|+ .+|++++|||||+|||+..++.+.++|.+...+..+|++||.++.. .
T Consensus 1050 gL~~~~~~~~~~LSGGqKQRLsLArALi----~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~ 1125 (2272)
T TIGR01257 1050 GLHHKRNEEAQDLSGGMQRKLSVAIAFV----GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADL 1125 (2272)
T ss_pred CCchhhcCChhhCCHHHHHHHHHHHHHH----cCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 3344456678999999999999999998 6889999999999999999999999998876788999999998865 4
Q ss_pred hccceee
Q 001073 1137 NANVLFR 1143 (1163)
Q Consensus 1137 ~a~~~~g 1143 (1163)
.||+++-
T Consensus 1126 laDrI~i 1132 (2272)
T TIGR01257 1126 LGDRIAI 1132 (2272)
T ss_pred hCCEEEE
Confidence 6998854
No 407
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.85 E-value=4.2e-09 Score=127.26 Aligned_cols=79 Identities=22% Similarity=0.309 Sum_probs=67.3
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~~ 1142 (1163)
..++..||||||++++||.+|+ .+|++++|||||++||+.+...+.++|.+.. ..+|+|||+...+ ..||+++
T Consensus 156 ~~~~~~LSgGqkqrv~la~al~----~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~--~tvIiisHd~~~~~~~~d~v~ 229 (552)
T TIGR03719 156 DADVTKLSGGERRRVALCRLLL----SKPDMLLLDEPTNHLDAESVAWLEQHLQEYP--GTVVAVTHDRYFLDNVAGWIL 229 (552)
T ss_pred cCchhhcCHHHHHHHHHHHHHh----cCCCEEEEcCCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcCeEE
Confidence 3568899999999999999997 6889999999999999999999999998763 5899999998765 4689886
Q ss_pred eeeeeCCc
Q 001073 1143 RTKFVDGV 1150 (1163)
Q Consensus 1143 gv~~~~g~ 1150 (1163)
-+ .+|.
T Consensus 230 ~l--~~g~ 235 (552)
T TIGR03719 230 EL--DRGR 235 (552)
T ss_pred EE--ECCE
Confidence 54 3553
No 408
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.85 E-value=4.3e-09 Score=126.86 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=66.9
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcch-hhhccceee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGM-FNNANVLFR 1143 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~-~~~a~~~~g 1143 (1163)
.++..||||||++++||.+|+ .+|++++|||||++||+.++..+.++|.+ .+..+|+|||+... ...||+++-
T Consensus 151 ~~~~~LSgGq~qrv~lA~aL~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~~ 224 (530)
T PRK15064 151 GLMSEVAPGWKLRVLLAQALF----SNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMAD 224 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHh----cCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEE
Confidence 468899999999999999997 57899999999999999999999999874 36789999999886 467998864
Q ss_pred eeeeCCc
Q 001073 1144 TKFVDGV 1150 (1163)
Q Consensus 1144 v~~~~g~ 1150 (1163)
+.+|.
T Consensus 225 --l~~g~ 229 (530)
T PRK15064 225 --LDYGE 229 (530)
T ss_pred --EeCCE
Confidence 44664
No 409
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.85 E-value=4.2e-09 Score=127.23 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=67.2
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~~ 1142 (1163)
.+++..||||||++++||.+|+ .+|+++||||||++||+.+...+.++|.+.. ..+|+|||+.+.+ ..||+++
T Consensus 158 ~~~~~~LSgGqkqrv~la~al~----~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~d~i~ 231 (556)
T PRK11819 158 DAKVTKLSGGERRRVALCRLLL----EKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVAGWIL 231 (556)
T ss_pred cCchhhcCHHHHHHHHHHHHHh----CCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcCeEE
Confidence 3568899999999999999997 6889999999999999999999999998864 5899999998865 5689886
Q ss_pred eeeeeCC
Q 001073 1143 RTKFVDG 1149 (1163)
Q Consensus 1143 gv~~~~g 1149 (1163)
-+ .+|
T Consensus 232 ~l--~~g 236 (556)
T PRK11819 232 EL--DRG 236 (556)
T ss_pred EE--eCC
Confidence 53 355
No 410
>PLN03073 ABC transporter F family; Provisional
Probab=98.85 E-value=4.7e-09 Score=128.34 Aligned_cols=79 Identities=27% Similarity=0.377 Sum_probs=67.0
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhh-hcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFN-NANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~-~a~~~~ 1142 (1163)
.+++..||||||++++||.+|+ .+|+++||||||++||+.++..+.+.|... .+.+|+|||+...+. .||+++
T Consensus 622 ~~~~~~LSgGqkqRvaLAraL~----~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~ 695 (718)
T PLN03073 622 LQPMYTLSGGQKSRVAFAKITF----KKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELW 695 (718)
T ss_pred cCCccccCHHHHHHHHHHHHHh----cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEE
Confidence 4678999999999999999887 688999999999999999999998888765 358999999988654 699986
Q ss_pred eeeeeCCc
Q 001073 1143 RTKFVDGV 1150 (1163)
Q Consensus 1143 gv~~~~g~ 1150 (1163)
-+ .+|.
T Consensus 696 ~l--~~G~ 701 (718)
T PLN03073 696 VV--SEGK 701 (718)
T ss_pred EE--ECCE
Confidence 54 4663
No 411
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.85 E-value=4.7e-09 Score=128.66 Aligned_cols=79 Identities=27% Similarity=0.319 Sum_probs=68.2
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~~ 1142 (1163)
.+++..||||||++++||.+|+ .+|+++||||||++||+..+..+.++|.... ..+|+|||+...+ ..||+++
T Consensus 151 ~~~~~~LSgGekqRv~LAraL~----~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvlivsHd~~~l~~~~d~i~ 224 (635)
T PRK11147 151 DAALSSLSGGWLRKAALGRALV----SNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIFISHDRSFIRNMATRIV 224 (635)
T ss_pred CCchhhcCHHHHHHHHHHHHHh----cCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHhcCeEE
Confidence 3678999999999999999997 6889999999999999999999999998773 5899999998765 5699886
Q ss_pred eeeeeCCc
Q 001073 1143 RTKFVDGV 1150 (1163)
Q Consensus 1143 gv~~~~g~ 1150 (1163)
-+ .+|.
T Consensus 225 ~L--~~G~ 230 (635)
T PRK11147 225 DL--DRGK 230 (635)
T ss_pred EE--ECCE
Confidence 54 4553
No 412
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.85 E-value=4.5e-09 Score=128.81 Aligned_cols=76 Identities=25% Similarity=0.386 Sum_probs=66.2
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhccce
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
..+++..||||||++++||.+|+ .+|+|+||||||++||+.++..+.++|... ++.+|+|||+...+ ..||++
T Consensus 434 ~~~~~~~LSgGekqRl~la~al~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i 507 (635)
T PRK11147 434 AMTPVKALSGGERNRLLLARLFL----KPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTEC 507 (635)
T ss_pred HhChhhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEE
Confidence 34678999999999999999987 588999999999999999999999999876 45899999998765 569988
Q ss_pred eee
Q 001073 1142 FRT 1144 (1163)
Q Consensus 1142 ~gv 1144 (1163)
+-+
T Consensus 508 ~~l 510 (635)
T PRK11147 508 WIF 510 (635)
T ss_pred EEE
Confidence 654
No 413
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=98.83 E-value=1.4e-09 Score=112.68 Aligned_cols=49 Identities=33% Similarity=0.558 Sum_probs=45.3
Q ss_pred CceeEEEecCccccCCCccccCCCCC-ceEEecCCCCchhhHHHHHHHHhCC
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPY-FNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~-~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
|++.+|.|.||+||..... .|+++ .|.|||||||||||+||||+-+|..
T Consensus 1 mrLrkiSl~nfr~f~~ldi--tf~e~~ttIivgpNGsGKTtvLdair~aL~~ 50 (440)
T COG3950 1 MRLRKISLNNFRCFLNLDI--TFGESETTIIVGPNGSGKTTVLDAIRNALNK 50 (440)
T ss_pred Cccchhhhhhhhhhhhcee--ecCCCceEEEECCCCCChhhHHHHHHHHHHh
Confidence 8999999999999988765 79998 9999999999999999999999963
No 414
>PLN03130 ABC transporter C family member; Provisional
Probab=98.83 E-value=6.7e-09 Score=138.40 Aligned_cols=78 Identities=23% Similarity=0.390 Sum_probs=71.1
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKF 1146 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~ 1146 (1163)
...|||||||++|||++|. .+||++||||||++||......|.+.|++..++.++|+|+||..++..||+++- |
T Consensus 1372 G~nLSgGQrQrlaLARALL----r~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlV--L 1445 (1622)
T PLN03130 1372 GENFSVGQRQLLSLARALL----RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILV--L 1445 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHH----cCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEE--E
Confidence 3589999999999999986 788999999999999999999999999988889999999999999999999964 5
Q ss_pred eCCc
Q 001073 1147 VDGV 1150 (1163)
Q Consensus 1147 ~~g~ 1150 (1163)
.+|.
T Consensus 1446 d~G~ 1449 (1622)
T PLN03130 1446 DAGR 1449 (1622)
T ss_pred ECCE
Confidence 5663
No 415
>PLN03211 ABC transporter G-25; Provisional
Probab=98.83 E-value=5.6e-09 Score=127.05 Aligned_cols=78 Identities=15% Similarity=0.251 Sum_probs=68.2
Q ss_pred cccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcc--hhhhcccee
Q 001073 1066 SLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEG--MFNNANVLF 1142 (1163)
Q Consensus 1066 ~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~--~~~~a~~~~ 1142 (1163)
.+..||||||+|++||..|+ .+||+++|||||+|||+..+..+.++|++++ .+.++|++||++. ++..+|+++
T Consensus 203 ~~~~LSgGerqRv~ia~aL~----~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~ii 278 (659)
T PLN03211 203 FIRGISGGERKRVSIAHEML----INPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVL 278 (659)
T ss_pred CCCCcChhhhhHHHHHHHHH----hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEE
Confidence 46789999999999999997 5889999999999999999999999998865 5789999999986 578899986
Q ss_pred eeeeeCC
Q 001073 1143 RTKFVDG 1149 (1163)
Q Consensus 1143 gv~~~~g 1149 (1163)
-+ .+|
T Consensus 279 lL--~~G 283 (659)
T PLN03211 279 VL--SEG 283 (659)
T ss_pred Ee--cCC
Confidence 53 455
No 416
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.83 E-value=6.4e-09 Score=125.66 Aligned_cols=74 Identities=22% Similarity=0.281 Sum_probs=65.3
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcch-hhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGM-FNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~-~~~a~~~~ 1142 (1163)
.+++..||||||++++||++|+ .+|+++||||||+|||+.++..+.++|.... ..+|+|||+... ..+||+++
T Consensus 440 ~~~~~~LSgG~~qrv~la~al~----~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i~ 513 (556)
T PRK11819 440 QKKVGVLSGGERNRLHLAKTLK----QGGNVLLLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRWFLDRIATHIL 513 (556)
T ss_pred cCchhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEEE
Confidence 4678999999999999999987 6889999999999999999999999998874 369999999875 45699875
Q ss_pred e
Q 001073 1143 R 1143 (1163)
Q Consensus 1143 g 1143 (1163)
-
T Consensus 514 ~ 514 (556)
T PRK11819 514 A 514 (556)
T ss_pred E
Confidence 4
No 417
>PLN03232 ABC transporter C family member; Provisional
Probab=98.82 E-value=5.7e-09 Score=139.13 Aligned_cols=77 Identities=25% Similarity=0.423 Sum_probs=70.3
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKF 1146 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~ 1146 (1163)
...||||||||+|||++|. ++||++||||||++||+.....|.+.|.+..++.++|+||||.+++..||+++- |
T Consensus 1369 G~~LSgGQrQrlaLARALL----r~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlV--L 1442 (1495)
T PLN03232 1369 GENFSVGQRQLLSLARALL----RRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILV--L 1442 (1495)
T ss_pred CCCCCHHHHHHHHHHHHHH----hCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEE--E
Confidence 3579999999999999986 788999999999999999999999999988888999999999999999999965 4
Q ss_pred eCC
Q 001073 1147 VDG 1149 (1163)
Q Consensus 1147 ~~g 1149 (1163)
.+|
T Consensus 1443 ~~G 1445 (1495)
T PLN03232 1443 SSG 1445 (1495)
T ss_pred ECC
Confidence 455
No 418
>PTZ00243 ABC transporter; Provisional
Probab=98.81 E-value=7.7e-09 Score=137.68 Aligned_cols=76 Identities=21% Similarity=0.316 Sum_probs=69.3
Q ss_pred cccChHHHHHHHHHHHHHHhccC-CCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeee
Q 001073 1068 SELSGGQRSLLALSLILALLLFK-PAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKF 1146 (1163)
Q Consensus 1068 ~~lSgGek~~~~ia~~lal~~~~-~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~ 1146 (1163)
..|||||||++|||++|. . ++|++||||||++||+.....+.+.|.+..++.++|+||||..++..||+++- |
T Consensus 1444 ~nLSgGQrQrLaLARALL----~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlV--L 1517 (1560)
T PTZ00243 1444 SNYSVGQRQLMCMARALL----KKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIV--M 1517 (1560)
T ss_pred CcCCHHHHHHHHHHHHHh----cCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEE--E
Confidence 679999999999999886 5 58999999999999999999999999988788999999999999999999954 5
Q ss_pred eCC
Q 001073 1147 VDG 1149 (1163)
Q Consensus 1147 ~~g 1149 (1163)
.+|
T Consensus 1518 d~G 1520 (1560)
T PTZ00243 1518 DHG 1520 (1560)
T ss_pred ECC
Confidence 566
No 419
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.81 E-value=6.2e-09 Score=129.08 Aligned_cols=77 Identities=23% Similarity=0.302 Sum_probs=68.0
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCC-CCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhcccee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKP-APLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANVLF 1142 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~-~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~~~ 1142 (1163)
+++..|||||+|+++||.+|+. .| +++||||||+++||+..+..+..+|..+. .+.++|+|||++..+..||+++
T Consensus 485 r~~~~LSgGE~QRv~LA~aL~~---~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi 561 (943)
T PRK00349 485 RSAGTLSGGEAQRIRLATQIGS---GLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIV 561 (943)
T ss_pred CchhhCCHHHHHHHHHHHHHhh---CCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 5788999999999999999984 33 47999999999999999999999998864 4789999999999888999986
Q ss_pred ee
Q 001073 1143 RT 1144 (1163)
Q Consensus 1143 gv 1144 (1163)
-+
T Consensus 562 ~L 563 (943)
T PRK00349 562 DI 563 (943)
T ss_pred Ee
Confidence 43
No 420
>PLN03073 ABC transporter F family; Provisional
Probab=98.81 E-value=8e-09 Score=126.33 Aligned_cols=79 Identities=24% Similarity=0.259 Sum_probs=68.1
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~~ 1142 (1163)
.+++..||||||++++||.+|+ .+|++++|||||++||+..+..+..+|... +..+|||||+...+ ..||+++
T Consensus 339 ~~~~~~LSgG~k~rv~LA~aL~----~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d~i~ 412 (718)
T PLN03073 339 VKATKTFSGGWRMRIALARALF----IEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVTDIL 412 (718)
T ss_pred hCchhhCCHHHHHHHHHHHHHh----cCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEE
Confidence 4678999999999999999997 578999999999999999999999999876 57899999998865 4599986
Q ss_pred eeeeeCCc
Q 001073 1143 RTKFVDGV 1150 (1163)
Q Consensus 1143 gv~~~~g~ 1150 (1163)
-+ .+|.
T Consensus 413 ~l--~~g~ 418 (718)
T PLN03073 413 HL--HGQK 418 (718)
T ss_pred EE--ECCE
Confidence 53 3554
No 421
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.80 E-value=8.9e-09 Score=137.04 Aligned_cols=77 Identities=22% Similarity=0.300 Sum_probs=70.6
Q ss_pred cccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeeee
Q 001073 1068 SELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKFV 1147 (1163)
Q Consensus 1068 ~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~~ 1147 (1163)
..|||||||++|||++|. .++|++||||||++||+.....|.+.|++..++.++|+||||..++..+|+++- |.
T Consensus 1352 ~nLSgGQrQrL~LARALL----r~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlv--L~ 1425 (1490)
T TIGR01271 1352 YVLSNGHKQLMCLARSIL----SKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLV--IE 1425 (1490)
T ss_pred CcCCHHHHHHHHHHHHHh----CCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEE--EE
Confidence 479999999999999886 789999999999999999999999999988888999999999999999999965 56
Q ss_pred CCc
Q 001073 1148 DGV 1150 (1163)
Q Consensus 1148 ~g~ 1150 (1163)
+|.
T Consensus 1426 ~G~ 1428 (1490)
T TIGR01271 1426 GSS 1428 (1490)
T ss_pred CCE
Confidence 663
No 422
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.80 E-value=9.1e-09 Score=137.44 Aligned_cols=78 Identities=26% Similarity=0.365 Sum_probs=70.8
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKF 1146 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~ 1146 (1163)
...|||||||++|||++|. .+||++||||||++||+.....|.+.|++..++.++|+||||..++..||+++- |
T Consensus 1419 G~~LSgGQrQrl~LARALL----r~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlV--l 1492 (1522)
T TIGR00957 1419 GENLSVGQRQLVCLARALL----RKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIV--L 1492 (1522)
T ss_pred CCcCCHHHHHHHHHHHHHH----cCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEE--E
Confidence 3579999999999999986 788999999999999999999999999988889999999999999999999965 5
Q ss_pred eCCc
Q 001073 1147 VDGV 1150 (1163)
Q Consensus 1147 ~~g~ 1150 (1163)
.+|.
T Consensus 1493 d~G~ 1496 (1522)
T TIGR00957 1493 DKGE 1496 (1522)
T ss_pred ECCE
Confidence 5663
No 423
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.2e-08 Score=97.50 Aligned_cols=79 Identities=27% Similarity=0.360 Sum_probs=67.8
Q ss_pred hhhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcch
Q 001073 1056 CVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGM 1134 (1163)
Q Consensus 1056 ~~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~ 1134 (1163)
.|+..+..+-+..+||-||+.|+|||.+.. .++|+-|||||+++||..++..+..++..++ .++-+|+.||.+.-
T Consensus 117 ~vgL~g~~dlp~~~LSAGQqRRvAlArL~l----s~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 117 QVGLAGLEDLPVGQLSAGQQRRVALARLWL----SPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HcCcccccccchhhcchhHHHHHHHHHHHc----CCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 455566666789999999999999999886 8999999999999999999999999998764 67889999998766
Q ss_pred hhhc
Q 001073 1135 FNNA 1138 (1163)
Q Consensus 1135 ~~~a 1138 (1163)
+..|
T Consensus 193 ~~~a 196 (209)
T COG4133 193 IASA 196 (209)
T ss_pred CCcc
Confidence 5444
No 424
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.77 E-value=1.1e-08 Score=118.98 Aligned_cols=76 Identities=30% Similarity=0.371 Sum_probs=64.5
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhh-cccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNN-ANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~-a~~~~ 1142 (1163)
..+++.||||||.+++||.+|. .+|++++|||||.+||...+.-+-++|.... + .+|||||+-.++.. |.+++
T Consensus 148 ~~~~~~LSGG~r~Rv~LA~aL~----~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-g-tviiVSHDR~FLd~V~t~I~ 221 (530)
T COG0488 148 DRPVSSLSGGWRRRVALARALL----EEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIVVSHDRYFLDNVATHIL 221 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHh----cCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEEEeCCHHHHHHHhhheE
Confidence 4689999999999999999885 7889999999999999999988888988654 3 99999999877654 66665
Q ss_pred eee
Q 001073 1143 RTK 1145 (1163)
Q Consensus 1143 gv~ 1145 (1163)
-+.
T Consensus 222 ~ld 224 (530)
T COG0488 222 ELD 224 (530)
T ss_pred Eec
Confidence 433
No 425
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.77 E-value=1.1e-08 Score=125.37 Aligned_cols=77 Identities=19% Similarity=0.259 Sum_probs=68.7
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~~~ 1142 (1163)
+..+..|||||+++++||++|+ .+|+++|||||+++||+.+...+.++|.++. .+.++|++||+......||+++
T Consensus 139 ~~~~~~LS~Gq~qrv~LAraL~----~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~ 214 (648)
T PRK10535 139 EYQPSQLSGGQQQRVSIARALM----NGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVI 214 (648)
T ss_pred cCCcccCCHHHHHHHHHHHHHh----cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEE
Confidence 3467799999999999999998 6789999999999999999999999998764 5789999999999988999886
Q ss_pred ee
Q 001073 1143 RT 1144 (1163)
Q Consensus 1143 gv 1144 (1163)
-+
T Consensus 215 ~l 216 (648)
T PRK10535 215 EI 216 (648)
T ss_pred EE
Confidence 43
No 426
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.6e-08 Score=100.24 Aligned_cols=70 Identities=20% Similarity=0.317 Sum_probs=61.4
Q ss_pred ccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhh-CCCCeEEEEEeCcchhhhc--ccee
Q 001073 1069 ELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH-FPHSQFIVVSLKEGMFNNA--NVLF 1142 (1163)
Q Consensus 1069 ~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~-~~~~q~i~it~~~~~~~~a--~~~~ 1142 (1163)
.+|||||.|.-|+-++++ .|.|+||||||+|||-.+.+.+.+.|..+ ..++-+++|||...+..+- |+.+
T Consensus 144 GFSGGEkKR~EilQ~~~l----ePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 144 GFSGGEKKRNEILQLLLL----EPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred CcCcchHHHHHHHHHHhc----CCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 689999999999998875 66999999999999999999999998876 4688999999999988775 6543
No 427
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=98.76 E-value=0.001 Score=75.71 Aligned_cols=47 Identities=23% Similarity=0.435 Sum_probs=41.0
Q ss_pred ceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhC
Q 001073 2 YIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 2 ~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
++.++++.|+-.|--+|+ +++.-+|.+.|.||+||||.|.|+.-+|=
T Consensus 6 KfrSLTliNWNGFFARTF--DlDeLVTTLSGGNGAGKSTTMA~FvTALI 52 (1480)
T COG3096 6 KFRSLTLINWNGFFARTF--DLDELVTTLSGGNGAGKSTTMAAFVTALI 52 (1480)
T ss_pred ccceeeEeeccchhhhhc--cHHHHHHhccCCCCCcccchHHHHHHHHc
Confidence 356889999999988776 78889999999999999999999888774
No 428
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.75 E-value=0.0033 Score=81.17 Aligned_cols=85 Identities=18% Similarity=0.257 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 781 KKIKAIKVQIQSASKDLKGHENERERLVMEHEAIVKEHASLENQLASVRMQINGLTSEVEEQKNKVAFTRTNHDQAQSEL 860 (1163)
Q Consensus 781 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~l 860 (1163)
..+..++.++..+...+.-...++..+...++..+.++..+..+...+...+......+..+..++..+...+..+..++
T Consensus 668 ~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev 747 (1822)
T KOG4674|consen 668 KEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAEL 747 (1822)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33333333333333333333334444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHH
Q 001073 861 NAIRL 865 (1163)
Q Consensus 861 ~~~~~ 865 (1163)
..++.
T Consensus 748 ~~LKq 752 (1822)
T KOG4674|consen 748 SNLKQ 752 (1822)
T ss_pred HHHHH
Confidence 44443
No 429
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.74 E-value=1.5e-08 Score=131.21 Aligned_cols=76 Identities=28% Similarity=0.344 Sum_probs=67.8
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCC--CEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhccce
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPA--PLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANVL 1141 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~--p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~~ 1141 (1163)
+++..|||||+|+++||.+|+ .++ ++||||||++|||+..+..+.++|..+. .+.++|+|||+.+++..||++
T Consensus 472 R~~~tLSGGE~QRV~LAraL~----~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~vi~~aDrV 547 (1809)
T PRK00635 472 RALATLSGGEQERTALAKHLG----AELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQMISLADRI 547 (1809)
T ss_pred CchhhCCHHHHHHHHHHHHHh----cCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhCCEE
Confidence 568899999999999999987 344 6999999999999999999999998864 478999999999999999999
Q ss_pred eee
Q 001073 1142 FRT 1144 (1163)
Q Consensus 1142 ~gv 1144 (1163)
+-+
T Consensus 548 i~L 550 (1809)
T PRK00635 548 IDI 550 (1809)
T ss_pred EEE
Confidence 754
No 430
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.74 E-value=1.6e-08 Score=133.50 Aligned_cols=79 Identities=18% Similarity=0.131 Sum_probs=67.9
Q ss_pred ccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhh-CCCCeEEEEEeCcchh-hhc
Q 001073 1061 GVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH-FPHSQFIVVSLKEGMF-NNA 1138 (1163)
Q Consensus 1061 ~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~-~~~~q~i~it~~~~~~-~~a 1138 (1163)
...++.+..||||||++++||.+|+ .+|++++||||++|||+..++.+.++|.+. ..+..+|++||.++.. ..|
T Consensus 2062 ~~~dk~~~~LSGGqKqRLslA~ALi----~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lc 2137 (2272)
T TIGR01257 2062 LYADRLAGTYSGGNKRKLSTAIALI----GCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALC 2137 (2272)
T ss_pred HHhcCChhhCCHHHHHHHHHHHHHh----cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 3345678999999999999999987 688999999999999999999999999875 3577899999998765 469
Q ss_pred cceee
Q 001073 1139 NVLFR 1143 (1163)
Q Consensus 1139 ~~~~g 1143 (1163)
|+++-
T Consensus 2138 DrV~I 2142 (2272)
T TIGR01257 2138 TRLAI 2142 (2272)
T ss_pred CEEEE
Confidence 98753
No 431
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.73 E-value=6.4e-09 Score=99.69 Aligned_cols=86 Identities=23% Similarity=0.361 Sum_probs=72.3
Q ss_pred hccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcchh
Q 001073 1058 AFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGMF 1135 (1163)
Q Consensus 1058 ~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~~ 1135 (1163)
...+..++.+.+||||||||+-||.+|| ...++++||||-.+||......++.+|+.+.+ +.++++|-|+-++-
T Consensus 124 ~L~~l~dryLd~LSGGQrQRAfIAMVla----QdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfA 199 (252)
T COG4604 124 HLEDLSDRYLDELSGGQRQRAFIAMVLA----QDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFA 199 (252)
T ss_pred cccchHHHhHHhcccchhhhhhhheeee----ccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHH
Confidence 4445556789999999999999998887 78899999999999999999999999987653 78999999998875
Q ss_pred h-hccceeeeeeeCC
Q 001073 1136 N-NANVLFRTKFVDG 1149 (1163)
Q Consensus 1136 ~-~a~~~~gv~~~~g 1149 (1163)
. +||.+.. |.+|
T Consensus 200 S~YsD~IVA--lK~G 212 (252)
T COG4604 200 SCYSDHIVA--LKNG 212 (252)
T ss_pred Hhhhhheee--ecCC
Confidence 4 4888754 5555
No 432
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.72 E-value=1.8e-08 Score=100.10 Aligned_cols=80 Identities=20% Similarity=0.183 Sum_probs=67.0
Q ss_pred ccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhh-CCCCeEEEEEeCcchh-h
Q 001073 1059 FGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH-FPHSQFIVVSLKEGMF-N 1136 (1163)
Q Consensus 1059 ~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~-~~~~q~i~it~~~~~~-~ 1136 (1163)
..++..+.+..||-|..|.+.+...+. +.|.++|||||.+||||.|+..+-+.|.+. ..++++|+.||+++-. +
T Consensus 120 i~~~~~~kIk~LSKGnqQKIQfisavi----HePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEe 195 (300)
T COG4152 120 IVGKKTKKIKELSKGNQQKIQFISAVI----HEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEE 195 (300)
T ss_pred ccccccchHHHhhhhhhHHHHHHHHHh----cCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHH
Confidence 344556789999999999999776664 788999999999999999999999999886 4689999999998754 4
Q ss_pred hcccee
Q 001073 1137 NANVLF 1142 (1163)
Q Consensus 1137 ~a~~~~ 1142 (1163)
.||+++
T Consensus 196 LCD~ll 201 (300)
T COG4152 196 LCDRLL 201 (300)
T ss_pred Hhhhhh
Confidence 588763
No 433
>PF11398 DUF2813: Protein of unknown function (DUF2813); InterPro: IPR022602 This entry contains YbjD from Escherichia coli (strain K12), which is a conserved protein with a nucleotide triphosphate binding domain.
Probab=98.71 E-value=3.1e-08 Score=109.27 Aligned_cols=61 Identities=20% Similarity=0.361 Sum_probs=51.4
Q ss_pred CceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHH
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELV 66 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i 66 (1163)
|+|++|+|.||+++..... +|++ .|++||+||+||||+++||+++||.. ...|.....||=
T Consensus 1 M~l~~i~i~~FRgi~~~~~--~l~~-~t~liG~N~~GKss~l~Al~~~l~~~--~~~~~f~~~DFh 61 (373)
T PF11398_consen 1 MKLERIEISNFRGIKRLSL--PLDD-NTVLIGENNWGKSSLLDALSLLLSPS--RRLYQFTESDFH 61 (373)
T ss_pred CeEEEEEEeccCccceEEE--EecC-ceEEEcCCCccHhHHHHHHHHHhCCC--ccccccCHHHhC
Confidence 9999999999999988654 6775 89999999999999999999999964 334556666764
No 434
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.71 E-value=2.9e-08 Score=99.82 Aligned_cols=73 Identities=19% Similarity=0.249 Sum_probs=62.1
Q ss_pred hhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC---CCCeEEEEEeCcc
Q 001073 1057 VAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF---PHSQFIVVSLKEG 1133 (1163)
Q Consensus 1057 ~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~---~~~q~i~it~~~~ 1133 (1163)
+......+++...||-|||+++-||+++- ..|+++|||||++|||..++..+.+.|.+.. ...++|+|||..+
T Consensus 159 ~g~~~la~r~~~~LS~Ge~rrvLiaRALv----~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e 234 (257)
T COG1119 159 LGAKHLADRPFGSLSQGEQRRVLIARALV----KDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE 234 (257)
T ss_pred cchhhhccCchhhcCHhHHHHHHHHHHHh----cCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh
Confidence 33344456789999999999999999885 6789999999999999999999999888753 3688999999865
No 435
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.71 E-value=2.1e-08 Score=116.71 Aligned_cols=76 Identities=22% Similarity=0.397 Sum_probs=66.3
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhh-cccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNN-ANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~-a~~~~ 1142 (1163)
.+++..||||||.|+.||.++. .+|-|+||||||.+||......+.+.|.... +.+|+|||+..++.. |+++|
T Consensus 434 ~~~v~~LSGGEk~Rl~La~ll~----~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~--Gtvl~VSHDr~Fl~~va~~i~ 507 (530)
T COG0488 434 EKPVGVLSGGEKARLLLAKLLL----QPPNLLLLDEPTNHLDIESLEALEEALLDFE--GTVLLVSHDRYFLDRVATRIW 507 (530)
T ss_pred hCchhhcCHhHHHHHHHHHHhc----cCCCEEEEcCCCccCCHHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcceEE
Confidence 4678999999999999998875 6999999999999999999999998887764 899999999887665 77777
Q ss_pred eee
Q 001073 1143 RTK 1145 (1163)
Q Consensus 1143 gv~ 1145 (1163)
-+.
T Consensus 508 ~~~ 510 (530)
T COG0488 508 LVE 510 (530)
T ss_pred EEc
Confidence 655
No 436
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.70 E-value=3.5e-08 Score=98.45 Aligned_cols=81 Identities=23% Similarity=0.290 Sum_probs=66.8
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcc-hhhhcc
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEG-MFNNAN 1139 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~-~~~~a~ 1139 (1163)
..+..+.|||||+|++|||++|. ..|.+++||||+.||-|.-+..|+..|+.+.+ +..+++|=.+-. -++.||
T Consensus 130 ~~~~aG~LSGGEQQMLAiaRALm----~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaD 205 (237)
T COG0410 130 RNQRAGTLSGGEQQMLAIARALM----SRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIAD 205 (237)
T ss_pred hcCcccCCChHHHHHHHHHHHHh----cCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhC
Confidence 45678999999999999999986 67799999999999999999999999998764 336667766654 477899
Q ss_pred ceeeeeeeCC
Q 001073 1140 VLFRTKFVDG 1149 (1163)
Q Consensus 1140 ~~~gv~~~~g 1149 (1163)
+.|= |.+|
T Consensus 206 r~yv--le~G 213 (237)
T COG0410 206 RGYV--LENG 213 (237)
T ss_pred EEEE--EeCC
Confidence 9885 4444
No 437
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.70 E-value=2.7e-08 Score=123.53 Aligned_cols=77 Identities=22% Similarity=0.356 Sum_probs=67.8
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCC---CEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhcc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPA---PLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNAN 1139 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~---p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~ 1139 (1163)
.+++..|||||+|+++||.+|+ .++ +++|||||++|||+..+..+.++|..+. .+.++|+|||++..+..||
T Consensus 825 ~~~~~tLSgGEkQRl~LAraL~----~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD 900 (943)
T PRK00349 825 GQPATTLSGGEAQRVKLAKELS----KRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTAD 900 (943)
T ss_pred cCCcccCCHHHHHHHHHHHHHh----cCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCC
Confidence 3568899999999999999987 344 8999999999999999999999998764 5789999999999999999
Q ss_pred ceeee
Q 001073 1140 VLFRT 1144 (1163)
Q Consensus 1140 ~~~gv 1144 (1163)
+++-+
T Consensus 901 ~ii~L 905 (943)
T PRK00349 901 WIIDL 905 (943)
T ss_pred EEEEe
Confidence 88654
No 438
>PLN03232 ABC transporter C family member; Provisional
Probab=98.67 E-value=2.8e-08 Score=132.60 Aligned_cols=77 Identities=17% Similarity=0.272 Sum_probs=65.7
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHH-HHhhhCCCCeEEEEEeCcchhhhccceeeee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGR-MIKTHFPHSQFIVVSLKEGMFNNANVLFRTK 1145 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~-~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~ 1145 (1163)
-..||||||||++||+++- .+||+++||||+++||+.....+.+ ++....++.+.|+|||+..++..||+++-+
T Consensus 738 G~~LSGGQkQRIaLARAly----~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L- 812 (1495)
T PLN03232 738 GVNISGGQKQRVSMARAVY----SNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILV- 812 (1495)
T ss_pred CcccCHHHHHHHHHHHHHh----cCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEE-
Confidence 4579999999999999885 7889999999999999998887755 455555788999999999999999998653
Q ss_pred eeCC
Q 001073 1146 FVDG 1149 (1163)
Q Consensus 1146 ~~~g 1149 (1163)
.+|
T Consensus 813 -~~G 815 (1495)
T PLN03232 813 -SEG 815 (1495)
T ss_pred -eCC
Confidence 455
No 439
>PLN03130 ABC transporter C family member; Provisional
Probab=98.67 E-value=3.5e-08 Score=131.75 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=66.3
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHH-HHhhhCCCCeEEEEEeCcchhhhccceeeee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGR-MIKTHFPHSQFIVVSLKEGMFNNANVLFRTK 1145 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~-~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~ 1145 (1163)
...||||||||++||+++- .++|+++||||+++||+...+++.+ .+....++.+.|+|||+..++..||+++-
T Consensus 738 G~~LSGGQKQRIaLARAly----~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~-- 811 (1622)
T PLN03130 738 GVNISGGQKQRVSMARAVY----SNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIIL-- 811 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHh----CCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEE--
Confidence 4579999999999999885 7889999999999999988877654 56555578899999999999999999965
Q ss_pred eeCCc
Q 001073 1146 FVDGV 1150 (1163)
Q Consensus 1146 ~~~g~ 1150 (1163)
|.+|.
T Consensus 812 L~~G~ 816 (1622)
T PLN03130 812 VHEGM 816 (1622)
T ss_pred EeCCE
Confidence 45654
No 440
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.66 E-value=4.4e-08 Score=121.42 Aligned_cols=80 Identities=20% Similarity=0.308 Sum_probs=68.9
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~~~ 1142 (1163)
.+++..|||||+++++||..|+. ...+++++|||||++|||+..+..+.++|..+. .+.++|+|||++..+..||+++
T Consensus 823 ~~~~~tLSgGe~QRl~LA~aL~~-~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii 901 (924)
T TIGR00630 823 GQPATTLSGGEAQRIKLAKELSK-RSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYII 901 (924)
T ss_pred cCccccCCHHHHHHHHHHHHHhh-cCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 45788999999999999998873 112579999999999999999999999998764 5789999999999999999886
Q ss_pred ee
Q 001073 1143 RT 1144 (1163)
Q Consensus 1143 gv 1144 (1163)
-+
T Consensus 902 ~L 903 (924)
T TIGR00630 902 DL 903 (924)
T ss_pred Ee
Confidence 54
No 441
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.65 E-value=4.6e-08 Score=105.77 Aligned_cols=84 Identities=26% Similarity=0.361 Sum_probs=70.2
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhh--CCCCeEEEEEeCcchhhh-ccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH--FPHSQFIVVSLKEGMFNN-ANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~--~~~~q~i~it~~~~~~~~-a~~ 1140 (1163)
.+++..|||||-|++|||..|+ .++++|+||||.|+||...+..+.+.|+.. ......++|-|+.-|+.+ ||+
T Consensus 450 e~~v~~LSGGELQRvaIaa~L~----reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr 525 (591)
T COG1245 450 ERPVDELSGGELQRVAIAAALS----READLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDR 525 (591)
T ss_pred hcccccCCchhHHHHHHHHHhc----cccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhce
Confidence 5678999999999999999988 799999999999999999998888888874 356789999999887665 898
Q ss_pred eeeeeeeCCce
Q 001073 1141 LFRTKFVDGVS 1151 (1163)
Q Consensus 1141 ~~gv~~~~g~S 1151 (1163)
++=.+=++|+.
T Consensus 526 ~ivF~GePg~~ 536 (591)
T COG1245 526 LIVFEGEPGKH 536 (591)
T ss_pred EEEEecCCCcc
Confidence 86444445443
No 442
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.64 E-value=4.9e-08 Score=130.54 Aligned_cols=76 Identities=20% Similarity=0.265 Sum_probs=66.7
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhh---hCCCCeEEEEEeCcchhhhccce
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKT---HFPHSQFIVVSLKEGMFNNANVL 1141 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~---~~~~~q~i~it~~~~~~~~a~~~ 1141 (1163)
.....||||||||++||+++. .+||+++||||+++||+.....+.+.+.. ...+.++|+|||+...+..||++
T Consensus 756 ~~g~~LSGGQkqRiaLARAl~----~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~i 831 (1522)
T TIGR00957 756 EKGVNLSGGQKQRVSLARAVY----SNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVI 831 (1522)
T ss_pred CCCCCCCHHHHHHHHHHHHHh----cCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEE
Confidence 346789999999999999986 68899999999999999999999987753 34578999999999999999998
Q ss_pred eee
Q 001073 1142 FRT 1144 (1163)
Q Consensus 1142 ~gv 1144 (1163)
+-+
T Consensus 832 i~l 834 (1522)
T TIGR00957 832 IVM 834 (1522)
T ss_pred EEe
Confidence 653
No 443
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.63 E-value=4.3e-08 Score=119.66 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=66.4
Q ss_pred cccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC-CCeEEEEEeCcc--hhhhccceeee
Q 001073 1068 SELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP-HSQFIVVSLKEG--MFNNANVLFRT 1144 (1163)
Q Consensus 1068 ~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~-~~q~i~it~~~~--~~~~a~~~~gv 1144 (1163)
..||||||+|++||..|+ .+|++++|||||+|||+.....+.+.|+..+. +.++|++||++. ++..+|+++=
T Consensus 165 ~~LSgGqrkRvsia~aL~----~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~l- 239 (617)
T TIGR00955 165 KGLSGGERKRLAFASELL----TDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIIL- 239 (617)
T ss_pred CCcCcchhhHHHHHHHHH----cCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEE-
Confidence 479999999999999987 68899999999999999999999999988653 688999999984 6899999853
Q ss_pred eeeCC
Q 001073 1145 KFVDG 1149 (1163)
Q Consensus 1145 ~~~~g 1149 (1163)
+.+|
T Consensus 240 -l~~G 243 (617)
T TIGR00955 240 -MAEG 243 (617)
T ss_pred -eeCC
Confidence 3455
No 444
>PLN03140 ABC transporter G family member; Provisional
Probab=98.63 E-value=5.5e-08 Score=127.75 Aligned_cols=73 Identities=18% Similarity=0.286 Sum_probs=64.9
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcc--hhhhccceee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEG--MFNNANVLFR 1143 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~--~~~~a~~~~g 1143 (1163)
+..||||||+|++||..|+ .+|+++||||||+|||+.+...++++|++.+ .+..+|++||++. ++..+|+++-
T Consensus 1017 ~~~LSgGerkRvsIa~aL~----~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vll 1092 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1092 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEE
Confidence 3689999999999999998 6889999999999999999999999998864 4678999999997 4788998864
No 445
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.62 E-value=5.3e-08 Score=95.05 Aligned_cols=75 Identities=27% Similarity=0.356 Sum_probs=59.1
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhh--CCCCeEEEEEeCcc-hhhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH--FPHSQFIVVSLKEG-MFNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~--~~~~q~i~it~~~~-~~~~a~~ 1140 (1163)
..++..|||||||.++++ ||. ..||.+++|||-||+|||.....++++-.+. ...-+.++|||+++ -+.+.++
T Consensus 143 ~~~iglLSGGQRQalsL~--MAt--l~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~R 218 (263)
T COG1101 143 SDRIGLLSGGQRQALSLL--MAT--LHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNR 218 (263)
T ss_pred cChhhhccchHHHHHHHH--HHh--cCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCe
Confidence 357899999999876655 443 4899999999999999999888888765543 34678999999975 5777777
Q ss_pred ee
Q 001073 1141 LF 1142 (1163)
Q Consensus 1141 ~~ 1142 (1163)
++
T Consensus 219 lI 220 (263)
T COG1101 219 LI 220 (263)
T ss_pred EE
Confidence 74
No 446
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.62 E-value=6.1e-08 Score=129.22 Aligned_cols=75 Identities=27% Similarity=0.308 Sum_probs=66.4
Q ss_pred cccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHH-HhhhCCCCeEEEEEeCcchhhhccceeee
Q 001073 1066 SLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRM-IKTHFPHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1066 ~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~-l~~~~~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
....||||||+|++||+++. .+|++++||||+++||+.....+.+. +....++.++|+|||++..+..||+++-+
T Consensus 545 ~g~~LSgGqkqRi~lARAl~----~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l 620 (1490)
T TIGR01271 545 GGITLSGGQRARISLARAVY----KDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLL 620 (1490)
T ss_pred cCCCcCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEE
Confidence 45789999999999999987 68899999999999999999999874 56666689999999999999999998754
No 447
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.62 E-value=6.3e-08 Score=125.66 Aligned_cols=80 Identities=21% Similarity=0.291 Sum_probs=69.0
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~~~ 1142 (1163)
.+++..|||||+++++||.+|+. ...+|+++|||||++|||+..+..+.++|..+. .+.++|+|||++..+..||+++
T Consensus 804 ~q~~~tLSGGE~QRV~LAraL~~-~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi 882 (1809)
T PRK00635 804 GRPLSSLSGGEIQRLKLAYELLA-PSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVL 882 (1809)
T ss_pred cCccccCCHHHHHHHHHHHHHhh-cCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEE
Confidence 35788999999999999998862 124779999999999999999999999998764 4678999999999889999886
Q ss_pred ee
Q 001073 1143 RT 1144 (1163)
Q Consensus 1143 gv 1144 (1163)
-.
T Consensus 883 ~L 884 (1809)
T PRK00635 883 EL 884 (1809)
T ss_pred EE
Confidence 54
No 448
>COG1106 Predicted ATPases [General function prediction only]
Probab=98.61 E-value=2.2e-08 Score=109.46 Aligned_cols=48 Identities=38% Similarity=0.665 Sum_probs=42.5
Q ss_pred ceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCC
Q 001073 2 YIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 2 ~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+|.++.++|||||++.... +| .++|+|+|+|||||||+|+|+.|..|.
T Consensus 1 MI~~~~IkNFkSf~e~~~~-~~-~~in~I~G~N~sGKSNlleAl~f~~~~ 48 (371)
T COG1106 1 MIKSFKIKNFKSFRELELE-DF-GKINIIYGANGAGKSNLLEALYFLKGL 48 (371)
T ss_pred CceEEEecccccHHHhhhc-cc-cceEEEEcCCCCchhHHHHHHHHHHHh
Confidence 5899999999999987654 46 469999999999999999999998874
No 449
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.60 E-value=8.5e-05 Score=78.55 Aligned_cols=9 Identities=44% Similarity=0.763 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 001073 339 EDLKQAVEE 347 (1163)
Q Consensus 339 ~~l~~~i~~ 347 (1163)
..++.++..
T Consensus 95 ~~lE~~l~e 103 (237)
T PF00261_consen 95 EELEQQLKE 103 (237)
T ss_dssp HHCHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 450
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.60 E-value=9.5e-08 Score=103.38 Aligned_cols=75 Identities=27% Similarity=0.418 Sum_probs=66.6
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC-CCeEEEEEeCcchhhh-ccc
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP-HSQFIVVSLKEGMFNN-ANV 1140 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~-~~q~i~it~~~~~~~~-a~~ 1140 (1163)
+++.++.|||||-|++|||..++ ..++||+||||+++||-..+-++.++|++++. +.-+|+|-|+...+.+ ||.
T Consensus 207 l~r~v~~LSGGELQr~aIaa~l~----rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~ 282 (591)
T COG1245 207 LDRDVSELSGGELQRVAIAAALL----RDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDF 282 (591)
T ss_pred hhhhhhhcCchHHHHHHHHHHHh----ccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhhe
Confidence 45779999999999999998886 79999999999999999999999999999876 6889999999987766 665
Q ss_pred e
Q 001073 1141 L 1141 (1163)
Q Consensus 1141 ~ 1141 (1163)
+
T Consensus 283 v 283 (591)
T COG1245 283 V 283 (591)
T ss_pred e
Confidence 4
No 451
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.54 E-value=1.2e-07 Score=125.12 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=62.4
Q ss_pred ccChHHHHHHHHHHHHHHhccCCCC-EEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcch--hhhccceee
Q 001073 1069 ELSGGQRSLLALSLILALLLFKPAP-LYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGM--FNNANVLFR 1143 (1163)
Q Consensus 1069 ~lSgGek~~~~ia~~lal~~~~~~p-~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~--~~~a~~~~g 1143 (1163)
.||||||+|++||..|+ .+|+ +++|||||+|||+.+...+.++|++++ .+..+|++||++.. +..+|+++-
T Consensus 901 ~LSgGqrqRl~Ia~aL~----~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~ 975 (1394)
T TIGR00956 901 GLNVEQRKRLTIGVELV----AKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLL 975 (1394)
T ss_pred CCCHHHhhHHHHHHHHH----cCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEE
Confidence 79999999999999997 4664 999999999999999999999998874 56789999999984 577898853
No 452
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.52 E-value=1e-07 Score=125.86 Aligned_cols=75 Identities=16% Similarity=0.169 Sum_probs=66.1
Q ss_pred cccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCc--chhhhccce
Q 001073 1066 SLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKE--GMFNNANVL 1141 (1163)
Q Consensus 1066 ~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~--~~~~~a~~~ 1141 (1163)
.+..||||||+|++||..|+ .+|++++|||||+|||+.+...+.++|+++++ +..+|++||.+ .++..+|++
T Consensus 206 ~~~~LSGGerkRvsIA~aL~----~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v 281 (1394)
T TIGR00956 206 FVRGVSGGERKRVSIAEASL----GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKV 281 (1394)
T ss_pred cCCCCCcccchHHHHHHHHH----hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceE
Confidence 46799999999999999997 57899999999999999999999999998753 67899999996 478889998
Q ss_pred eee
Q 001073 1142 FRT 1144 (1163)
Q Consensus 1142 ~gv 1144 (1163)
+-+
T Consensus 282 ~~L 284 (1394)
T TIGR00956 282 IVL 284 (1394)
T ss_pred EEE
Confidence 653
No 453
>PTZ00243 ABC transporter; Provisional
Probab=98.50 E-value=1.8e-07 Score=124.81 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=66.1
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHH-HhhhCCCCeEEEEEeCcchhhhccceee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRM-IKTHFPHSQFIVVSLKEGMFNNANVLFR 1143 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~-l~~~~~~~q~i~it~~~~~~~~a~~~~g 1143 (1163)
.....||||||+|++||++|. .+|++++||||+++||+.....+... +.....+.++|+|||+...+..||+++-
T Consensus 778 ~~g~~LSGGQkqRvaLARAl~----~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~ 853 (1560)
T PTZ00243 778 EKGVNLSGGQKARVSLARAVY----ANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVA 853 (1560)
T ss_pred CCCCCCCHHHHHHHHHHHHHh----cCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEE
Confidence 457899999999999999987 68899999999999999887777653 3333357899999999999999998865
Q ss_pred eeeeCCc
Q 001073 1144 TKFVDGV 1150 (1163)
Q Consensus 1144 v~~~~g~ 1150 (1163)
|.+|.
T Consensus 854 --l~~G~ 858 (1560)
T PTZ00243 854 --LGDGR 858 (1560)
T ss_pred --EECCE
Confidence 34553
No 454
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=2e-07 Score=102.78 Aligned_cols=75 Identities=27% Similarity=0.393 Sum_probs=61.0
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhh-cccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNN-ANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~-a~~~~ 1142 (1163)
..++..||||||+++++|-+. ...|-|+||||||.+||......+...|.... +-+|+|||+.+++.. |+-+|
T Consensus 477 ~~si~~LSGGQKsrvafA~~~----~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--GGVv~VSHd~~fi~~~c~E~W 550 (582)
T KOG0062|consen 477 LQSIASLSGGQKSRVAFAACT----WNNPHLLVLDEPTNHLDRDSLGALAKALKNFN--GGVVLVSHDEEFISSLCKELW 550 (582)
T ss_pred hccccccCCcchhHHHHHHHh----cCCCcEEEecCCCccccHHHHHHHHHHHHhcC--CcEEEEECcHHHHhhcCceeE
Confidence 356889999999999977543 25668999999999999999988888887653 668999999988765 66666
Q ss_pred ee
Q 001073 1143 RT 1144 (1163)
Q Consensus 1143 gv 1144 (1163)
-|
T Consensus 551 vv 552 (582)
T KOG0062|consen 551 VV 552 (582)
T ss_pred EE
Confidence 54
No 455
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.48 E-value=2.9e-07 Score=101.81 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=68.9
Q ss_pred cccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhh-CCCCeEEEEEeCc-chhhh
Q 001073 1060 GGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH-FPHSQFIVVSLKE-GMFNN 1137 (1163)
Q Consensus 1060 ~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~-~~~~q~i~it~~~-~~~~~ 1137 (1163)
+-.++..+..||=|++|++-|.-+|. ..+.|+||||||+-|-|.....++.+++.+ ..+..+|+||||. +.+++
T Consensus 131 ~vdp~~~V~dLsVG~qQRVEIlKaLy----r~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~i 206 (501)
T COG3845 131 PVDPDAKVADLSVGEQQRVEILKALY----RGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAI 206 (501)
T ss_pred CCCccceeecCCcchhHHHHHHHHHh----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHh
Confidence 33445679999999999999998875 688999999999999999999999999987 4688999999995 68999
Q ss_pred ccce
Q 001073 1138 ANVL 1141 (1163)
Q Consensus 1138 a~~~ 1141 (1163)
||++
T Consensus 207 aDrv 210 (501)
T COG3845 207 ADRV 210 (501)
T ss_pred hCee
Confidence 9986
No 456
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.47 E-value=0.00024 Score=75.22 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 418 KTKISHCEKELKEKTHQLMSKREEA 442 (1163)
Q Consensus 418 ~~~~~~l~~~l~~~~~~~~~~~~~~ 442 (1163)
..++..|...+.....+...+...+
T Consensus 175 e~~i~~L~~~lkeaE~Rae~aE~~v 199 (237)
T PF00261_consen 175 EEKIRDLEEKLKEAENRAEFAERRV 199 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 457
>PRK00064 recF recombination protein F; Reviewed
Probab=98.46 E-value=2.6e-06 Score=96.44 Aligned_cols=69 Identities=26% Similarity=0.255 Sum_probs=57.9
Q ss_pred ccccccChHHHHHHHHHHHHHHh-----ccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh
Q 001073 1065 QSLSELSGGQRSLLALSLILALL-----LFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF 1135 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~-----~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~ 1135 (1163)
.....+|+||+++++||+.||.. ...++|+++||||+++||+.++..+..+|... +.|+|++||....+
T Consensus 269 ~~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~ 342 (361)
T PRK00064 269 PAADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDL 342 (361)
T ss_pred CHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhh
Confidence 45689999999999999999853 24678999999999999999999999988653 46999999986543
No 458
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.45 E-value=3.3e-07 Score=92.97 Aligned_cols=82 Identities=22% Similarity=0.287 Sum_probs=68.7
Q ss_pred cccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcc-hhh
Q 001073 1060 GGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEG-MFN 1136 (1163)
Q Consensus 1060 ~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~-~~~ 1136 (1163)
.+....++..||-|||-++-||..| .+||.+++|||||.|||.....++-++|++.+ .++++++.||..+ +-.
T Consensus 147 ~~~lk~~vr~LSlGqRmraeLaaaL----Lh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~ 222 (325)
T COG4586 147 EGFLKWPVRKLSLGQRMRAELAAAL----LHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIAT 222 (325)
T ss_pred hhhhhhhhhhccchHHHHHHHHHHh----cCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHH
Confidence 3333568999999999999988665 48999999999999999999999999999764 4788999999975 677
Q ss_pred hccceeeee
Q 001073 1137 NANVLFRTK 1145 (1163)
Q Consensus 1137 ~a~~~~gv~ 1145 (1163)
.||++|-+.
T Consensus 223 lc~rv~~I~ 231 (325)
T COG4586 223 LCDRVLLID 231 (325)
T ss_pred hhhheEEee
Confidence 799987543
No 459
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.44 E-value=0.011 Score=71.12 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhHHhHHhhhcCC
Q 001073 979 AEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKET---LKVTWVKVNKDFGSIFSTLLPG 1036 (1163)
Q Consensus 979 ~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~---~~~~~~~~~~~f~~~~~~l~~~ 1036 (1163)
..++|.....++..++.........++.+...+.+. +......+-..+..-|..+|.+
T Consensus 861 ~vq~y~~r~~el~~l~~~~~~~~~~le~i~~kl~~~ke~w~~~le~~V~~In~~Fs~~F~~ 921 (1072)
T KOG0979|consen 861 AVQQYEVREDELRELETKLEKLSEDLERIKDKLSDVKEVWLPKLEEMVEQINERFSQLFSS 921 (1072)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777888888888888888888888888776654 4445555566667779998876
No 460
>PLN03140 ABC transporter G family member; Provisional
Probab=98.44 E-value=1.2e-07 Score=124.74 Aligned_cols=79 Identities=19% Similarity=0.365 Sum_probs=68.1
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCc--chhhhccc
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKE--GMFNNANV 1140 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~--~~~~~a~~ 1140 (1163)
..+..||||||+|++||.+|+ .+|+++||||||+|||+.+...+.+.|+..+ .+.++|++||.+ +++..+|+
T Consensus 332 ~~~rglSGGerkRVsia~aL~----~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~ 407 (1470)
T PLN03140 332 EMIRGISGGQKKRVTTGEMIV----GPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDD 407 (1470)
T ss_pred ccccCCCcccceeeeehhhhc----CCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhhe
Confidence 357799999999999999886 7889999999999999999999999998874 367899999985 68889998
Q ss_pred eeeeeeeCC
Q 001073 1141 LFRTKFVDG 1149 (1163)
Q Consensus 1141 ~~gv~~~~g 1149 (1163)
++- +.+|
T Consensus 408 vil--L~~G 414 (1470)
T PLN03140 408 IIL--LSEG 414 (1470)
T ss_pred EEE--eeCc
Confidence 864 3355
No 461
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=98.41 E-value=1.8e-07 Score=107.79 Aligned_cols=63 Identities=22% Similarity=0.465 Sum_probs=53.7
Q ss_pred CceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHH
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVY 67 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~ 67 (1163)
|+|.+|+|.||+||...++ .|..|+|++||+|-||||++||||+.+|+.. .......+.|+++
T Consensus 1 M~L~~v~I~nFR~i~~lsl--~~~~g~~vlIGeN~~GKsslLdAL~l~l~~~--~~~~~f~~~d~~~ 63 (581)
T COG3593 1 MHLERVKIKNFRGINRLSL--EFEEGLNVLIGENNSGKSSLLDALRLLLDPE--SDLYSFTLDDFHF 63 (581)
T ss_pred CcceeEEecccceeeeeee--eecCCceEEEcCCCcchHHHHHHHHHHcCCc--ccccceeeccCcc
Confidence 9999999999999998876 7999999999999999999999999999864 2334455556664
No 462
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.40 E-value=2.5e-07 Score=88.81 Aligned_cols=87 Identities=24% Similarity=0.355 Sum_probs=73.8
Q ss_pred ccchhhhhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEe
Q 001073 1051 DGLEVCVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSL 1130 (1163)
Q Consensus 1051 ~~~~~~~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~ 1130 (1163)
+++.-.++...........||-||||..-|+.+++ ..|.+++||||.|||-+.......++|..++...-+++|-|
T Consensus 129 de~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~----Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEH 204 (249)
T COG4674 129 DELLATIGLGDERDRLAALLSHGQKQWLEIGMLLA----QDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEH 204 (249)
T ss_pred HHHHHHcccchhhhhhhhhhccchhhhhhhheeec----cCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEec
Confidence 34444455566666788999999999999998887 68899999999999999999999999999999999999999
Q ss_pred Ccchhh-hccce
Q 001073 1131 KEGMFN-NANVL 1141 (1163)
Q Consensus 1131 ~~~~~~-~a~~~ 1141 (1163)
+++++. +|+++
T Consensus 205 DM~Fvr~~A~~V 216 (249)
T COG4674 205 DMGFVREIADKV 216 (249)
T ss_pred cHHHHHHhhhee
Confidence 998754 47654
No 463
>COG4637 Predicted ATPase [General function prediction only]
Probab=98.40 E-value=1.3e-07 Score=97.80 Aligned_cols=45 Identities=31% Similarity=0.557 Sum_probs=40.7
Q ss_pred CceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHH
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~ 48 (1163)
|+|.+|.++||+||..... +. +++|+|||.||+||||+++|++++
T Consensus 1 ~~l~si~vknyRs~r~l~l--ei-~~~nviIGANGaGKSn~~~~l~~l 45 (373)
T COG4637 1 MMLVSIKVKNYRSFRSLDL--EI-RRVNVIIGANGAGKSNFYDALRLL 45 (373)
T ss_pred CccchhhhhcchhHHhccc--cc-cceEEEEcCCCCchhHHHHHHHHH
Confidence 8999999999999988654 33 689999999999999999999887
No 464
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.37 E-value=0.035 Score=73.56 Aligned_cols=38 Identities=32% Similarity=0.439 Sum_probs=31.5
Q ss_pred CCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhh
Q 001073 22 GFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRAS 60 (1163)
Q Consensus 22 ~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~ 60 (1163)
.++ |-|-|+|-||+|||||+.||.|-.|..+.+.....
T Consensus 15 ~lD-G~t~i~GTNG~GKTTlLRlip~FYGa~p~rlv~k~ 52 (1201)
T PF12128_consen 15 KLD-GHTHICGTNGVGKTTLLRLIPFFYGADPSRLVPKT 52 (1201)
T ss_pred ecC-CceeeecCCCCcHHHHHHHHHHhcCCCccccCCcc
Confidence 444 78899999999999999999999998876655443
No 465
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.36 E-value=1.1e-05 Score=91.06 Aligned_cols=67 Identities=25% Similarity=0.245 Sum_probs=57.1
Q ss_pred ccccChHHHHHHHHHHHHHHh-----ccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh
Q 001073 1067 LSELSGGQRSLLALSLILALL-----LFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF 1135 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~-----~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~ 1135 (1163)
-..+|+||+..++||+.||.. ....+|+++||||+++||+..+..+.++|... +.|+||+||.+..+
T Consensus 273 ~~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~ 344 (365)
T TIGR00611 273 EDFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHL 344 (365)
T ss_pred HHhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhc
Confidence 467899999999999999973 23468999999999999999999999998653 67999999987643
No 466
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.36 E-value=7.8e-08 Score=119.94 Aligned_cols=65 Identities=25% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 396 LEDQLADAKVTVGSAETELKQLKTKISHCEKELKEKTHQLMSKREEAVSVESELNARRKDVENVK 460 (1163)
Q Consensus 396 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 460 (1163)
+..++++++..+..-......+...+..++.++..+...+..-......+...+..+..++..+.
T Consensus 241 L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k 305 (859)
T PF01576_consen 241 LESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWK 305 (859)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHH
Confidence 33444444444444444444444444444444444444443333333333334444443333333
No 467
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=6.2e-07 Score=99.03 Aligned_cols=67 Identities=30% Similarity=0.331 Sum_probs=59.1
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhh
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFN 1136 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~ 1136 (1163)
.+++..||||+|=+++||++|- ..|++++|||||.+||..|+.-+-.+|.+.. .++|+|||+-+++.
T Consensus 193 ~~pt~slSGGWrMrlaLARAlf----~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn 259 (582)
T KOG0062|consen 193 LQPTKSLSGGWRMRLALARALF----AKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLN 259 (582)
T ss_pred hccccccCcchhhHHHHHHHHh----cCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHH
Confidence 4678999999999999998773 6889999999999999999999999998764 89999999977654
No 468
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.34 E-value=8e-07 Score=81.27 Aligned_cols=79 Identities=22% Similarity=0.232 Sum_probs=62.4
Q ss_pred hhhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhh--hCCCCeEEEEEeCcc
Q 001073 1056 CVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKT--HFPHSQFIVVSLKEG 1133 (1163)
Q Consensus 1056 ~~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~--~~~~~q~i~it~~~~ 1133 (1163)
.+...+...+.+.+||||||.|+++.+++- ..|.|++||||.+.||.+-+..+-+.+.. .+-+--.|+|||+..
T Consensus 121 ~~gL~g~f~~dP~tlSGGQrARvaL~R~Ll----a~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 121 RSGLDGAFHQDPATLSGGQRARVALLRALL----AQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HhccchhhhcChhhcCcchHHHHHHHHHHH----hCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 444555566789999999999999998875 56799999999999999888888776643 244677999999876
Q ss_pred hhhhc
Q 001073 1134 MFNNA 1138 (1163)
Q Consensus 1134 ~~~~a 1138 (1163)
-....
T Consensus 197 Dvpag 201 (213)
T COG4136 197 DVPAG 201 (213)
T ss_pred cCCCC
Confidence 55433
No 469
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.33 E-value=0.012 Score=69.32 Aligned_cols=54 Identities=15% Similarity=0.216 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 949 KAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKV 1003 (1163)
Q Consensus 949 ~l~~~l~~l~~~~~~l~~~vn~~~~e~~~~~~~~~~~l~~~~~~l~~~~~~l~~~ 1003 (1163)
+++.++..|+..+..|+ ..+....+..+...+.-.+|.++++.+...+..+...
T Consensus 459 nlEekVklLeetv~dlE-alee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r 512 (1243)
T KOG0971|consen 459 NLEEKVKLLEETVGDLE-ALEEMNEQLQESNRELELDLREELDMAKGARKELQKR 512 (1243)
T ss_pred CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44555555555554443 2333222333333333334445544444444333333
No 470
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.32 E-value=1.4e-06 Score=81.66 Aligned_cols=75 Identities=19% Similarity=0.236 Sum_probs=62.8
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchhhh-ccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMFNN-ANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~~~-a~~ 1140 (1163)
+..|..+|||++|+..||+-|. +.|.+.|+||||.|||..-..++.++++.+- -+--.||+||+...... ||+
T Consensus 146 DD~PrtFSGGMqQRLQiARnLV----t~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~r 221 (258)
T COG4107 146 DDLPRTFSGGMQQRLQIARNLV----TRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADR 221 (258)
T ss_pred cCcccccchHHHHHHHHHHHhc----cCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhc
Confidence 4568899999999999998885 7889999999999999998899999988753 35679999999876543 777
Q ss_pred ee
Q 001073 1141 LF 1142 (1163)
Q Consensus 1141 ~~ 1142 (1163)
+.
T Consensus 222 lm 223 (258)
T COG4107 222 LM 223 (258)
T ss_pred ce
Confidence 73
No 471
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=9.6e-07 Score=94.53 Aligned_cols=83 Identities=25% Similarity=0.376 Sum_probs=65.3
Q ss_pred cccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeee
Q 001073 1066 SLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTK 1145 (1163)
Q Consensus 1066 ~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~ 1145 (1163)
.+..||||||+||++|-+ |+ ..|+++||||||.+||-.....+...|.++. +-+|||||+..++...|--+-|-
T Consensus 701 kikdLSGGQKaRValaeL-al---~~PDvlILDEPTNNLDIESIDALaEAIney~--GgVi~VsHDeRLi~eT~C~LwVv 774 (807)
T KOG0066|consen 701 KIKDLSGGQKARVALAEL-AL---GGPDVLILDEPTNNLDIESIDALAEAINEYN--GGVIMVSHDERLIVETDCNLWVV 774 (807)
T ss_pred eeeecCCcchHHHHHHHH-hc---CCCCEEEecCCCCCcchhhHHHHHHHHHhcc--CcEEEEecccceeeecCceEEEE
Confidence 477899999999998864 43 7889999999999999999999999888764 67899999998877665333333
Q ss_pred eeCCceEEE
Q 001073 1146 FVDGVSTVQ 1154 (1163)
Q Consensus 1146 ~~~g~S~v~ 1154 (1163)
-..|++.|.
T Consensus 775 E~Q~i~eId 783 (807)
T KOG0066|consen 775 ENQGIDEID 783 (807)
T ss_pred ccCChhhcc
Confidence 334666654
No 472
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.0039 Score=71.77 Aligned_cols=163 Identities=11% Similarity=0.128 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHHHhHHHHHHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 294 GEVKALSGKVDALSQDLVREVSVLNNKDDTLRSEKENAEKIVRNIEDLKQAVEEKVSAVRKCEEGAADLKKKFEELSKGL 373 (1163)
Q Consensus 294 ~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 373 (1163)
..++++..+.+.-++.+..+..+...+..+++.+..++..+...+.++.-.+...+..++......+-...+++.+++.+
T Consensus 416 ar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqari 495 (1118)
T KOG1029|consen 416 ARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARI 495 (1118)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 44455555555556666666666666666666666666666666666666666666666666666666666667777777
Q ss_pred HHHHHHHHhHHcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 374 EENEKEYQGVLAGKSSGNEEKCLEDQLADAKVTVGSAETELKQLKTKISHCEKELKEKTHQLMSKREEAVSVESELNARR 453 (1163)
Q Consensus 374 ~~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (1163)
.++.+.+..+..+. ..+..++...+.....-..+...++.....-+.-...+.+.+.++..+.+....+++.+.
T Consensus 496 kE~q~kl~~l~~Ek------q~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n 569 (1118)
T KOG1029|consen 496 KELQEKLQKLAPEK------QELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFN 569 (1118)
T ss_pred HHHHHHHHhhhhHH------HHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 76666665553321 222333332222221112222222222222222233344444445555554455555555
Q ss_pred HHHHHHHHH
Q 001073 454 KDVENVKLA 462 (1163)
Q Consensus 454 ~~l~~l~~~ 462 (1163)
.+++++...
T Consensus 570 ~qlkelk~~ 578 (1118)
T KOG1029|consen 570 NQLKELKED 578 (1118)
T ss_pred HHHHHHHHH
Confidence 555555543
No 473
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.31 E-value=1.3e-06 Score=101.85 Aligned_cols=83 Identities=20% Similarity=0.243 Sum_probs=71.2
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhh-CCCCeEEEEEeCcchhhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH-FPHSQFIVVSLKEGMFNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~-~~~~q~i~it~~~~~~~~a~~~~ 1142 (1163)
.++..+|||||-||+=||.=|+-.. +..-+|||||||.||....+.++...|..+ ..+.++|+|-|++..+..||+++
T Consensus 817 GQpatTLSGGEaQRvKLA~EL~k~~-tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~II 895 (935)
T COG0178 817 GQPATTLSGGEAQRVKLAKELSKRS-TGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWII 895 (935)
T ss_pred CCccccccchHHHHHHHHHHHhhcc-CCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEE
Confidence 4688999999999999998887432 334899999999999999999999999886 46889999999999999999997
Q ss_pred eeeee
Q 001073 1143 RTKFV 1147 (1163)
Q Consensus 1143 gv~~~ 1147 (1163)
-+-..
T Consensus 896 DLGPe 900 (935)
T COG0178 896 DLGPE 900 (935)
T ss_pred EcCCC
Confidence 54443
No 474
>PF13175 AAA_15: AAA ATPase domain
Probab=98.31 E-value=4.3e-07 Score=107.05 Aligned_cols=70 Identities=19% Similarity=0.280 Sum_probs=59.5
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCC--C----EEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcch
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPA--P----LYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGM 1134 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~--p----~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~ 1134 (1163)
-++..+|.|.+.++.|+++++....... + ++++|||.++|.|...+.+.+.|...+. +.|+|++||-|.+
T Consensus 337 ~~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~i 414 (415)
T PF13175_consen 337 IPLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPFI 414 (415)
T ss_pred CChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChhh
Confidence 4688999999999999988876433222 2 9999999999999999999999998876 8999999998865
No 475
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.30 E-value=1.2e-06 Score=101.55 Aligned_cols=73 Identities=25% Similarity=0.387 Sum_probs=66.4
Q ss_pred cccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeee
Q 001073 1068 SELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1068 ~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
..|||||+|++|+|+++- +.|.+.||||-|++||+....++..++++..++..+|-|+||+.+...+++..-+
T Consensus 514 ~vLS~GEqQRlafARilL----~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l 586 (604)
T COG4178 514 RVLSGGEQQRLAFARLLL----HKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLEL 586 (604)
T ss_pred hhcChhHHHHHHHHHHHH----cCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheee
Confidence 478999999999999884 6789999999999999999999999999999999999999999998888775443
No 476
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.29 E-value=1.3e-06 Score=99.12 Aligned_cols=79 Identities=23% Similarity=0.389 Sum_probs=68.9
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeC-cchhhhcccee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLK-EGMFNNANVLF 1142 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~-~~~~~~a~~~~ 1142 (1163)
.++..||||-+|.+.||..|+ ..|+++||||||.|.|.-....|..+|.+++ .+.-+|+||-. ++++..||+++
T Consensus 397 ~~v~~LSGGNQQKVvlarwL~----~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIl 472 (500)
T COG1129 397 QPIGTLSGGNQQKVVLARWLA----TDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRIL 472 (500)
T ss_pred chhhcCCchhhhhHHHHHHHh----cCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEE
Confidence 578999999999999887776 6889999999999999999999999999875 46788999887 67899999997
Q ss_pred eeeeeCC
Q 001073 1143 RTKFVDG 1149 (1163)
Q Consensus 1143 gv~~~~g 1149 (1163)
= |.+|
T Consensus 473 V--m~~G 477 (500)
T COG1129 473 V--MREG 477 (500)
T ss_pred E--EECC
Confidence 5 5554
No 477
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.29 E-value=3.4e-06 Score=91.77 Aligned_cols=70 Identities=29% Similarity=0.247 Sum_probs=55.4
Q ss_pred cccccChHHHHHHHHHHHHHHh-----ccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCc-chhhhc
Q 001073 1066 SLSELSGGQRSLLALSLILALL-----LFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKE-GMFNNA 1138 (1163)
Q Consensus 1066 ~~~~lSgGek~~~~ia~~lal~-----~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~-~~~~~a 1138 (1163)
....||+||+++++||+.||.. ....||+++||||+++||+..+..+...|.... |+|++||.. .+...|
T Consensus 180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTDLADFDALW 255 (270)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCCchhccchh
Confidence 4778999999999999988732 235779999999999999999999999987653 677777654 444444
No 478
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.27 E-value=0.025 Score=68.51 Aligned_cols=80 Identities=14% Similarity=0.354 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 001073 947 PYKAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLKVTWVKVNKDF 1026 (1163)
Q Consensus 947 ~~~l~~~l~~l~~~~~~l~~~vn~~~~e~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~f 1026 (1163)
...+..++..+......+...++..... |......+..+.+++..+......+...+..+...-.+ .......+...+
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~-ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~e-Ar~kL~~~~~~L 427 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIA-YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELE-AREKLERYRNKL 427 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3467778888888877776667766666 88888888888888888888888888888877664332 223334444444
Q ss_pred Hh
Q 001073 1027 GS 1028 (1163)
Q Consensus 1027 ~~ 1028 (1163)
..
T Consensus 428 ~~ 429 (569)
T PRK04778 428 HE 429 (569)
T ss_pred HH
Confidence 33
No 479
>COG5293 Predicted ATPase [General function prediction only]
Probab=98.24 E-value=0.013 Score=63.86 Aligned_cols=33 Identities=39% Similarity=0.561 Sum_probs=29.5
Q ss_pred CCCCCceEEecC-----------CCCchhhHHHHHHHHhCCCcc
Q 001073 22 GFDPYFNAITGL-----------NGSGKSNILDSICFVLGITNL 54 (1163)
Q Consensus 22 ~~~~~~~~ivG~-----------NGsGKS~i~~ai~~~lg~~~~ 54 (1163)
.|+||+|.|.|. ||-||||++..|.||||.+-.
T Consensus 22 kFnpGlNIVlae~red~~~~~~tnglGKSTlie~i~Fclg~ti~ 65 (591)
T COG5293 22 KFNPGLNIVLAEIREDENRKKDTNGLGKSTLIELIDFCLGSTID 65 (591)
T ss_pred eeCCCceEEeeeccCcccccccccCcchhhHHHHHHHHhccccc
Confidence 689999999983 999999999999999997543
No 480
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.22 E-value=1.9e-06 Score=109.11 Aligned_cols=79 Identities=24% Similarity=0.368 Sum_probs=65.9
Q ss_pred cccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHH-HHhhhCCCCeEEEEEeCcchhhhccceeee
Q 001073 1066 SLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGR-MIKTHFPHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1066 ~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~-~l~~~~~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
.--+||||||+|++||+++ +.++++|+||.|-+++|..--+++++ .|..+-++.+.|++||....+..||.++=
T Consensus 640 rGinLSGGQKqRIsLARAV----Y~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iiv- 714 (1381)
T KOG0054|consen 640 RGINLSGGQKQRISLARAV----YQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIV- 714 (1381)
T ss_pred CccCCcHhHHHHHHHHHHH----hccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEE-
Confidence 4568999999999999976 58999999999999999866555554 56556678999999999999999999964
Q ss_pred eeeCCc
Q 001073 1145 KFVDGV 1150 (1163)
Q Consensus 1145 ~~~~g~ 1150 (1163)
|.||.
T Consensus 715 -l~~G~ 719 (1381)
T KOG0054|consen 715 -LKDGK 719 (1381)
T ss_pred -ecCCe
Confidence 55654
No 481
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.22 E-value=2.7e-06 Score=74.51 Aligned_cols=54 Identities=28% Similarity=0.369 Sum_probs=44.2
Q ss_pred cccccccChHHH-HHHHHHHHHHHh---c-----cCCCCEEEeecCccCCCHHhHHHHHHHHh
Q 001073 1064 KQSLSELSGGQR-SLLALSLILALL---L-----FKPAPLYILDEVDAALDLSHTQNIGRMIK 1117 (1163)
Q Consensus 1064 ~~~~~~lSgGek-~~~~ia~~lal~---~-----~~~~p~~~lDE~~~~lD~~~~~~~~~~l~ 1117 (1163)
.++.+.+||||+ ..+++++++|+. . ...+.+++||||+++||+.+...++.+|+
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~ 89 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLR 89 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHh
Confidence 467899999999 888888888773 1 23468999999999999999999998875
No 482
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.19 E-value=1.7e-06 Score=96.17 Aligned_cols=73 Identities=23% Similarity=0.358 Sum_probs=60.9
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhh-cccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNN-ANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~-a~~~~ 1142 (1163)
..++.+||+|||.||.+|+++ +.+|-+++|||||.|||......+.+.|.+. .+.+|+|||+..++.. |+.++
T Consensus 504 ~~p~~~LS~Gqr~rVlFa~l~----~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~ 577 (614)
T KOG0927|consen 504 VVPMSQLSDGQRRRVLFARLA----VKQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIW 577 (614)
T ss_pred ccchhhcccccchhHHHHHHH----hcCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhH
Confidence 357899999999999977654 4888999999999999999998888888764 4778999999876543 77664
No 483
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.18 E-value=0.028 Score=64.66 Aligned_cols=10 Identities=30% Similarity=0.444 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 001073 421 ISHCEKELKE 430 (1163)
Q Consensus 421 ~~~l~~~l~~ 430 (1163)
+..|..++..
T Consensus 373 ie~L~~el~~ 382 (546)
T PF07888_consen 373 IEKLSRELQM 382 (546)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 484
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.17 E-value=1.9e-06 Score=89.28 Aligned_cols=77 Identities=17% Similarity=0.159 Sum_probs=62.5
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHH-HHhhhC-CCCeEEEEEeCcchhhhccc
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGR-MIKTHF-PHSQFIVVSLKEGMFNNANV 1140 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~-~l~~~~-~~~q~i~it~~~~~~~~a~~ 1140 (1163)
....++.+|+|+++++.|+..+ .+++++++|||+++||+.....+.. ++..+. .+..+|++||...+...+|+
T Consensus 85 l~~~~s~fs~g~~~~~~i~~~~-----~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~ 159 (200)
T cd03280 85 IEQSLSTFSSHMKNIARILQHA-----DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYK 159 (200)
T ss_pred hhcCcchHHHHHHHHHHHHHhC-----CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhc
Confidence 3456789999999999887553 5789999999999999998888754 565543 47899999999888889998
Q ss_pred eeee
Q 001073 1141 LFRT 1144 (1163)
Q Consensus 1141 ~~gv 1144 (1163)
.+.+
T Consensus 160 ~~~l 163 (200)
T cd03280 160 REGV 163 (200)
T ss_pred CCCe
Confidence 7544
No 485
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=98.16 E-value=1.9e-06 Score=109.09 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=64.9
Q ss_pred ccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCC-eEEEEEeCcchhhh-c
Q 001073 1061 GVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHS-QFIVVSLKEGMFNN-A 1138 (1163)
Q Consensus 1061 ~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~-q~i~it~~~~~~~~-a 1138 (1163)
+....+++.+|||.|.+.++|.++. .+|++++||||++||||..++.++++|....+++ -+|++||-++-.+. |
T Consensus 690 ~~~~~~~~~ySgG~kRkLs~aiali----g~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLC 765 (885)
T KOG0059|consen 690 PYANKQVRTYSGGNKRRLSFAIALI----GDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALC 765 (885)
T ss_pred hhhccchhhCCCcchhhHHHHHHHh----cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHh
Confidence 3345678999999999999887775 6789999999999999999999999999876655 89999998766554 7
Q ss_pred cce
Q 001073 1139 NVL 1141 (1163)
Q Consensus 1139 ~~~ 1141 (1163)
|++
T Consensus 766 tR~ 768 (885)
T KOG0059|consen 766 TRT 768 (885)
T ss_pred hhh
Confidence 755
No 486
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.15 E-value=2.6e-06 Score=102.73 Aligned_cols=72 Identities=22% Similarity=0.320 Sum_probs=61.6
Q ss_pred cccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcc--hhhhccceee
Q 001073 1068 SELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEG--MFNNANVLFR 1143 (1163)
Q Consensus 1068 ~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~--~~~~a~~~~g 1143 (1163)
..+|||||.|++||.=+. +.||+++|||||+|||......+..+|++.+ ++..+|+.-|.|. ++..=|+++-
T Consensus 169 rgiSGGErkRvsia~Ell----~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~l 243 (613)
T KOG0061|consen 169 RGLSGGERKRVSIALELL----TDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLL 243 (613)
T ss_pred CccccchhhHHHHHHHHH----cCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhh
Confidence 579999999999887665 7889999999999999999999999999875 4778888889984 6777787743
No 487
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.15 E-value=4.9e-06 Score=92.27 Aligned_cols=70 Identities=24% Similarity=0.328 Sum_probs=53.6
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCC-CEEEeecCccCCCHHhHHHHHHHHhhhCC-CCeEEEEEeCcchh
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPA-PLYILDEVDAALDLSHTQNIGRMIKTHFP-HSQFIVVSLKEGMF 1135 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~-p~~~lDE~~~~lD~~~~~~~~~~l~~~~~-~~q~i~it~~~~~~ 1135 (1163)
.-++..+|.|++++++|+..+. ...+. +++++|||+++|+|...+.+.++|...++ +.|+|++||.|.++
T Consensus 231 ~~~~~~~S~G~~~~l~l~~~l~--~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 231 EIPLSSLSSGEKRLLSLLSLLL--SAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp EGGGS---HHHHHHHHHHHHHH--TTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred EEeeccCCHHHHHHHHHHHHHh--CcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 3578899999999976555443 33333 99999999999999999999999987766 89999999999876
No 488
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.12 E-value=0.037 Score=63.71 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001073 988 SKKNIIENDKSKIKKVIEELDEK 1010 (1163)
Q Consensus 988 ~~~~~l~~~~~~l~~~i~~l~~~ 1010 (1163)
..+++.+..+.++...+..+-..
T Consensus 342 ~~L~~kd~~i~~mReec~~l~~E 364 (546)
T KOG0977|consen 342 QALNDKDAEIAKMREECQQLSVE 364 (546)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555554443
No 489
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.11 E-value=5.4e-06 Score=92.34 Aligned_cols=80 Identities=23% Similarity=0.263 Sum_probs=64.4
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhh-hcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFN-NANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~-~a~~~~ 1142 (1163)
.+.+..||||++-|++||.+|- ..|.+++|||||++||...+.-+-.+|.+.... .++|++|--.++. .|-.|+
T Consensus 216 ~k~~~~~SgGwrmR~aLAr~Lf----~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii 290 (614)
T KOG0927|consen 216 DKKVKDLSGGWRMRAALARALF----QKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNII 290 (614)
T ss_pred HHHhhccCchHHHHHHHHHHHh----cCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhh
Confidence 3568899999999999999885 577999999999999999998888898876544 7888899776654 366666
Q ss_pred eeeeeC
Q 001073 1143 RTKFVD 1148 (1163)
Q Consensus 1143 gv~~~~ 1148 (1163)
.+++.+
T Consensus 291 ~l~~kk 296 (614)
T KOG0927|consen 291 HLDNKK 296 (614)
T ss_pred eecccc
Confidence 655543
No 490
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.11 E-value=5.8e-07 Score=112.26 Aligned_cols=40 Identities=23% Similarity=0.244 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 726 LSEIVKKIEQELEEAKSSAKEKQLLYENSVSAVSVLEKSI 765 (1163)
Q Consensus 726 l~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~i 765 (1163)
|......|+.++..+...+.++...+.........++-++
T Consensus 459 Lek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el 498 (859)
T PF01576_consen 459 LEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVEL 498 (859)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555554444444444444444443333
No 491
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.08 E-value=0.067 Score=65.38 Aligned_cols=57 Identities=14% Similarity=0.242 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 400 LADAKVTVGSAETELKQLKTKISHCEKELKEKTHQLMSKREEAVSVESELNARRKDV 456 (1163)
Q Consensus 400 i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 456 (1163)
++.....+..+..+......++..+...+..++.++..++..+......+..+...+
T Consensus 109 ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L 165 (775)
T PF10174_consen 109 LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEML 165 (775)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455555555555555555555555555555555554444443
No 492
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.08 E-value=0.00042 Score=76.82 Aligned_cols=147 Identities=20% Similarity=0.220 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH--HhHHhhhcCC-ccccccCCCCCcccccchhhhhc
Q 001073 983 YNDLMSKKNIIENDKSKIKKVIEELDEKKKETLKVTWVKVNKDF--GSIFSTLLPG-TMAKLEPPEGGNFLDGLEVCVAF 1059 (1163)
Q Consensus 983 ~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~f--~~~~~~l~~~-~~~~l~~~~~~~~~~~~~~~~~~ 1059 (1163)
|..+....++|+.++.+...+++.+-+.... .+... ++..| ..+-+.|..| |.+.+.+.... ...++.+.-..
T Consensus 447 Y~g~ekk~n~LE~e~kn~~~ev~kls~ei~~-ie~~l--~~~~~~vke~nq~l~~g~gra~~~L~~~~-kek~y~i~r~~ 522 (758)
T COG4694 447 YCGLEKKINNLEKEIKNNQEEVKKLSNEIKE-IEKFL--VSIKPIVKEINQTLLKGYGRANFSLACTE-KEKFYRIQRED 522 (758)
T ss_pred HHHHHHHHhHHHHHHHhhHHHHHHHHHHHHH-HHHHH--hhchhhHHHHHHHHHhhcchheeeeeecc-chhhheeeccc
Confidence 4455555666666666666655555443321 11111 22222 2222333333 44444432211 11233332221
Q ss_pred cccccccc-cccChHHHHHHHHHHHHHHhccCC----CCEEEeecCccCCCHHhHHHHHHHHhhh-CCCCeEEEEEeCcc
Q 001073 1060 GGVWKQSL-SELSGGQRSLLALSLILALLLFKP----APLYILDEVDAALDLSHTQNIGRMIKTH-FPHSQFIVVSLKEG 1133 (1163)
Q Consensus 1060 ~~~~~~~~-~~lSgGek~~~~ia~~lal~~~~~----~p~~~lDE~~~~lD~~~~~~~~~~l~~~-~~~~q~i~it~~~~ 1133 (1163)
.... ..||-||++.+|++|.||-..-+| ..++|+|.|-..+|....-+++.+|++. ....|+|+.||+
T Consensus 523 ----g~~~gn~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHn-- 596 (758)
T COG4694 523 ----GQLVGNTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHN-- 596 (758)
T ss_pred ----CccccccccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHhCceEEEEEecc--
Confidence 1233 459999999999999988754443 3689999999999999999999999876 467899999998
Q ss_pred hhhhcc
Q 001073 1134 MFNNAN 1139 (1163)
Q Consensus 1134 ~~~~a~ 1139 (1163)
++.+-|
T Consensus 597 tYF~rd 602 (758)
T COG4694 597 TYFYRD 602 (758)
T ss_pred ceehHH
Confidence 433444
No 493
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.06 E-value=0.028 Score=64.69 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 246 RDSAVGEVDRIKAKIAEIDCNTERTRLEIQEMEKQVS 282 (1163)
Q Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 282 (1163)
+..+..-++........++.++.++..++..++..+.
T Consensus 94 l~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~ 130 (546)
T KOG0977|consen 94 LATARKLLDETARERAKLEIEITKLREELKELRKKLE 130 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444333
No 494
>PF13166 AAA_13: AAA domain
Probab=98.06 E-value=0.066 Score=67.77 Aligned_cols=39 Identities=26% Similarity=0.287 Sum_probs=31.1
Q ss_pred CccccCC-CccccCCCCCceEEecCCCCchhhHHHHHHHHh
Q 001073 10 GFKSYAS-RTVVPGFDPYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 10 nFks~~~-~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
||+||.+ ...+ ++.+++|+|.|.|||||||+-..|.-+-
T Consensus 1 n~~~~~~~~~~~-~~~~~~n~IYG~NGsGKStlsr~l~~~~ 40 (712)
T PF13166_consen 1 NYASFDNWDNEL-DEFKKINLIYGRNGSGKSTLSRILKSLC 40 (712)
T ss_pred CeeeecCCCccC-CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 7888862 3344 4567899999999999999999996654
No 495
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.00 E-value=0.034 Score=62.25 Aligned_cols=60 Identities=20% Similarity=0.324 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001073 429 KEKTHQLMSKREEAVSVESELNARRKDVENVKLALESDRASEMAMAQKLKDEIRDLSAQL 488 (1163)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~l~~l~~~~ 488 (1163)
..+...+..+..++..+......+...+..++..+.......+..+..+..++..++..+
T Consensus 219 ~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~ 278 (312)
T PF00038_consen 219 KELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEM 278 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 333333334444444444444444444444444333444444444444444444444433
No 496
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.00 E-value=9.8e-06 Score=94.71 Aligned_cols=80 Identities=23% Similarity=0.253 Sum_probs=66.2
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhccceee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANVLFR 1143 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~~~g 1143 (1163)
+...+|||||-||+-||--+.-- -..=+||||||..||.+..-.++...|+.+. .+-+.|+|-|++++|..||+++-
T Consensus 477 R~a~TLSGGEaQRIRLAtqiGS~--LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iID 554 (935)
T COG0178 477 RSAGTLSGGEAQRIRLATQIGSG--LTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIID 554 (935)
T ss_pred ccCCCcChhHHHHHHHHHHhccc--ceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEe
Confidence 57889999999999988665421 2236999999999999988888888888765 47899999999999999999964
Q ss_pred eee
Q 001073 1144 TKF 1146 (1163)
Q Consensus 1144 v~~ 1146 (1163)
|-.
T Consensus 555 iGP 557 (935)
T COG0178 555 IGP 557 (935)
T ss_pred eCC
Confidence 433
No 497
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.99 E-value=0.031 Score=58.81 Aligned_cols=39 Identities=23% Similarity=0.360 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 246 RDSAVGEVDRIKAKIAEIDCNTERTRLEIQEMEKQVSNL 284 (1163)
Q Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 284 (1163)
...+.+..+.+..++.++...+..+..+..++..++.++
T Consensus 36 ~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~el 74 (294)
T COG1340 36 ASELAEKRDELNAKVRELREKAQELREERDEINEEVQEL 74 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444433
No 498
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.98 E-value=1.3e-05 Score=101.69 Aligned_cols=72 Identities=22% Similarity=0.370 Sum_probs=67.7
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhcccee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLF 1142 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~ 1142 (1163)
-.++|-||||++|||++|- +++.++||||.||++|+.--..|.+.|++..+++++|.|.||..++-.+|++.
T Consensus 1273 G~N~SvGQRQLlCLARALL----r~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVl 1344 (1381)
T KOG0054|consen 1273 GENFSVGQRQLLCLARALL----RKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVL 1344 (1381)
T ss_pred CccCChHHHHHHHHHHHHh----ccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEE
Confidence 4788999999999999985 89999999999999999999999999999999999999999999999999985
No 499
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.96 E-value=5.4e-06 Score=79.33 Aligned_cols=35 Identities=37% Similarity=0.521 Sum_probs=30.7
Q ss_pred CCCCCceEEecCCCCchhhHHHHHHHHhCCCcchh
Q 001073 22 GFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQ 56 (1163)
Q Consensus 22 ~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~ 56 (1163)
+|.+.+|+|+|.|||||||||.||..+.|..+...
T Consensus 34 eF~apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg 68 (233)
T COG3910 34 EFRAPITFITGENGSGKSTLLEAIAAGMGFNAAGG 68 (233)
T ss_pred cccCceEEEEcCCCccHHHHHHHHHhhccccccCC
Confidence 68899999999999999999999999998654433
No 500
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.95 E-value=5e-06 Score=80.28 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=24.3
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhCC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
.|+|+||||||+||||+|..++-.+..
T Consensus 27 g~iTs~IGPNGAGKSTLLS~~sRL~~~ 53 (252)
T COG4604 27 GGITSIIGPNGAGKSTLLSMMSRLLKK 53 (252)
T ss_pred CceeEEECCCCccHHHHHHHHHHhccc
Confidence 489999999999999999999888763
Done!