Query 001073
Match_columns 1163
No_of_seqs 291 out of 2453
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 09:39:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001073.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001073hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kta_B Chromosome segregation 100.0 9.7E-29 3.3E-33 244.4 13.8 152 1008-1159 2-154 (173)
2 3kta_A Chromosome segregation 99.9 1.3E-26 4.3E-31 237.2 16.0 176 1-182 2-180 (182)
3 3qks_A DNA double-strand break 99.9 1.3E-24 4.3E-29 224.2 16.7 176 1-197 1-189 (203)
4 1w1w_A Structural maintenance 99.9 4.8E-24 1.6E-28 248.4 12.8 173 1-186 2-190 (430)
5 1e69_A Chromosome segregation 99.9 1E-22 3.4E-27 227.2 13.0 157 1-170 1-159 (322)
6 3l51_A Structural maintenance 99.9 4.2E-22 1.4E-26 195.4 13.8 160 492-651 2-161 (161)
7 3auy_A DNA double-strand break 99.9 1.5E-21 5.1E-26 222.1 15.7 172 1-194 3-181 (371)
8 1f2t_A RAD50 ABC-ATPase; DNA d 99.9 4.1E-22 1.4E-26 193.8 7.0 136 1-156 1-149 (149)
9 1w1w_A Structural maintenance 99.9 1.2E-21 4.2E-26 228.0 12.4 190 971-1160 225-427 (430)
10 4ad8_A DNA repair protein RECN 99.8 4.1E-19 1.4E-23 211.3 24.0 139 1-172 38-177 (517)
11 3l51_B Structural maintenance 99.8 5.3E-20 1.8E-24 181.0 8.6 141 505-653 17-160 (166)
12 3nwc_A SMC protein; structural 99.8 2.3E-19 7.9E-24 178.7 9.7 134 505-654 34-169 (189)
13 3qkt_A DNA double-strand break 99.8 4.3E-19 1.5E-23 199.2 9.1 156 1-176 1-168 (339)
14 1gxl_A SMC, chromosome segrega 99.7 8.8E-17 3E-21 168.1 12.0 159 506-671 43-204 (213)
15 1e69_A Chromosome segregation 99.7 2.7E-16 9.3E-21 175.1 13.2 109 1052-1160 202-310 (322)
16 2wd5_B Structural maintenance 99.6 4E-16 1.4E-20 162.4 12.3 137 506-654 48-187 (213)
17 2wd5_A Structural maintenance 99.6 2.8E-16 9.5E-21 165.1 11.1 140 506-652 53-196 (233)
18 2o5v_A DNA replication and rep 99.6 4.3E-16 1.5E-20 173.1 11.2 138 1-171 4-141 (359)
19 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 2.5E-15 8.5E-20 144.3 13.6 93 1064-1156 52-147 (148)
20 1gxj_A SMC, chromosome segrega 99.6 9.4E-16 3.2E-20 156.0 8.9 141 506-653 31-174 (186)
21 3qf7_A RAD50; ABC-ATPase, ATPa 99.6 6.8E-15 2.3E-19 165.9 16.1 158 1-176 1-172 (365)
22 4ad8_A DNA repair protein RECN 99.5 6.6E-13 2.2E-17 157.8 26.8 156 988-1147 309-473 (517)
23 1qhl_A Protein (cell division 99.5 1.8E-15 6.2E-20 156.4 2.9 163 1-177 5-209 (227)
24 4aby_A DNA repair protein RECN 99.5 7E-14 2.4E-18 162.8 12.3 138 1-171 38-176 (415)
25 3qkt_A DNA double-strand break 99.5 2E-13 7E-18 152.9 14.5 94 1063-1156 242-338 (339)
26 3tif_A Uncharacterized ABC tra 99.4 2E-13 6.9E-18 143.5 8.7 81 1064-1150 140-222 (235)
27 3auy_A DNA double-strand break 99.4 9.5E-12 3.2E-16 141.2 22.4 91 1065-1155 276-369 (371)
28 3gfo_A Cobalt import ATP-bindi 99.4 6.7E-13 2.3E-17 142.1 8.9 87 1058-1150 132-221 (275)
29 2pcj_A ABC transporter, lipopr 99.4 5.5E-13 1.9E-17 139.2 8.0 81 1064-1150 135-216 (224)
30 2nq2_C Hypothetical ABC transp 99.4 1.3E-12 4.4E-17 138.8 10.0 87 1058-1150 117-206 (253)
31 2ff7_A Alpha-hemolysin translo 99.4 1.2E-12 4.1E-17 138.6 9.5 80 1065-1150 141-220 (247)
32 3nh6_A ATP-binding cassette SU 99.3 1.2E-12 4.2E-17 141.9 9.1 80 1065-1150 186-265 (306)
33 1g6h_A High-affinity branched- 99.3 1.5E-12 5.2E-17 139.0 9.4 87 1058-1150 142-230 (257)
34 2ixe_A Antigen peptide transpo 99.3 1.8E-12 6.3E-17 139.1 9.7 80 1064-1149 151-232 (271)
35 2ghi_A Transport protein; mult 99.3 1.8E-12 6E-17 138.5 9.3 80 1065-1150 151-230 (260)
36 3tui_C Methionine import ATP-b 99.3 1.4E-12 4.7E-17 143.7 8.5 87 1057-1149 151-240 (366)
37 2olj_A Amino acid ABC transpor 99.3 1.5E-12 5.1E-17 138.6 8.4 82 1063-1150 153-236 (263)
38 2onk_A Molybdate/tungstate ABC 99.3 1.3E-12 4.3E-17 137.5 7.6 82 1063-1150 120-204 (240)
39 1b0u_A Histidine permease; ABC 99.3 1.6E-12 5.4E-17 139.0 8.2 82 1063-1150 147-230 (262)
40 1vpl_A ABC transporter, ATP-bi 99.3 2.3E-12 8E-17 136.7 9.3 81 1064-1150 141-223 (256)
41 2d2e_A SUFC protein; ABC-ATPas 99.3 2.8E-12 9.5E-17 136.3 9.1 81 1064-1150 137-221 (250)
42 2pjz_A Hypothetical protein ST 99.3 5.5E-12 1.9E-16 134.3 11.1 79 1063-1149 122-202 (263)
43 1ji0_A ABC transporter; ATP bi 99.3 2.8E-12 9.5E-17 135.4 8.7 84 1061-1150 131-216 (240)
44 2cbz_A Multidrug resistance-as 99.3 3E-12 1E-16 134.7 8.7 81 1064-1150 122-205 (237)
45 2ihy_A ABC transporter, ATP-bi 99.3 2.8E-12 9.4E-17 138.0 8.3 84 1061-1150 153-240 (279)
46 1mv5_A LMRA, multidrug resista 99.3 1.6E-12 5.5E-17 137.7 6.2 79 1065-1149 135-213 (243)
47 2yz2_A Putative ABC transporte 99.3 3.9E-12 1.3E-16 136.5 9.1 84 1061-1150 130-215 (266)
48 4g1u_C Hemin import ATP-bindin 99.3 1.9E-12 6.6E-17 138.3 6.5 91 1057-1149 129-224 (266)
49 2qi9_C Vitamin B12 import ATP- 99.3 4.3E-12 1.5E-16 134.1 8.0 87 1058-1150 115-210 (249)
50 2zu0_C Probable ATP-dependent 99.3 9.2E-12 3.1E-16 133.5 10.1 80 1065-1150 159-242 (267)
51 2pze_A Cystic fibrosis transme 99.3 5.8E-12 2E-16 131.9 8.3 79 1066-1150 127-206 (229)
52 1sgw_A Putative ABC transporte 99.3 2.8E-12 9.6E-17 131.9 5.8 75 1064-1142 128-204 (214)
53 3rlf_A Maltose/maltodextrin im 99.2 8.1E-12 2.8E-16 138.6 8.5 86 1058-1149 122-210 (381)
54 3d31_A Sulfate/molybdate ABC t 99.2 8.2E-12 2.8E-16 137.9 8.3 86 1059-1150 117-205 (348)
55 2it1_A 362AA long hypothetical 99.2 9.4E-12 3.2E-16 138.0 8.6 82 1063-1150 127-211 (362)
56 3fvq_A Fe(3+) IONS import ATP- 99.2 1E-11 3.4E-16 136.9 8.7 88 1056-1149 125-215 (359)
57 2yyz_A Sugar ABC transporter, 99.2 1.1E-11 3.8E-16 137.2 9.1 88 1057-1150 121-211 (359)
58 4aby_A DNA repair protein RECN 99.2 6E-11 2E-15 137.9 15.7 78 1065-1146 290-370 (415)
59 1oxx_K GLCV, glucose, ABC tran 99.2 1.3E-11 4.4E-16 137.0 8.8 87 1058-1150 129-218 (353)
60 1z47_A CYSA, putative ABC-tran 99.2 1E-11 3.5E-16 137.1 7.9 83 1062-1150 138-223 (355)
61 1g29_1 MALK, maltose transport 99.2 1.7E-11 5.8E-16 136.9 9.6 84 1061-1150 131-217 (372)
62 3gd7_A Fusion complex of cysti 99.2 1.5E-11 5E-16 137.9 8.1 76 1069-1150 155-230 (390)
63 1v43_A Sugar-binding transport 99.2 1.4E-11 4.8E-16 137.1 7.9 88 1057-1150 129-219 (372)
64 2bbs_A Cystic fibrosis transme 99.2 1.7E-11 5.7E-16 132.4 8.2 79 1066-1150 156-235 (290)
65 3qf4_A ABC transporter, ATP-bi 99.2 4.8E-11 1.7E-15 143.4 10.7 79 1065-1149 475-553 (587)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.2 5.7E-11 1.9E-15 133.8 9.9 84 1064-1149 274-360 (365)
67 4a82_A Cystic fibrosis transme 99.1 6.5E-11 2.2E-15 142.4 10.4 80 1065-1150 473-552 (578)
68 3b5x_A Lipid A export ATP-bind 99.1 6.1E-11 2.1E-15 142.9 9.1 80 1065-1150 476-555 (582)
69 3b60_A Lipid A export ATP-bind 99.1 5.8E-11 2E-15 143.1 8.9 80 1065-1150 476-555 (582)
70 3qf4_B Uncharacterized ABC tra 99.1 7.4E-11 2.5E-15 142.4 9.3 78 1066-1149 488-565 (598)
71 3ozx_A RNAse L inhibitor; ATP 99.1 1.2E-10 4.2E-15 137.1 10.3 78 1064-1145 380-460 (538)
72 2yl4_A ATP-binding cassette SU 99.1 8.8E-11 3E-15 142.0 9.3 79 1066-1150 480-558 (595)
73 3bk7_A ABC transporter ATP-bin 99.1 1.1E-10 3.6E-15 139.6 8.6 78 1063-1144 222-301 (607)
74 3ozx_A RNAse L inhibitor; ATP 99.1 1.5E-10 5.1E-15 136.4 9.8 82 1057-1142 126-208 (538)
75 3j16_B RLI1P; ribosome recycli 99.1 1E-10 3.5E-15 139.3 8.0 78 1064-1145 462-542 (608)
76 1yqt_A RNAse L inhibitor; ATP- 99.1 1.3E-10 4.3E-15 137.6 8.4 84 1057-1144 146-231 (538)
77 3bk7_A ABC transporter ATP-bin 99.1 2.2E-10 7.4E-15 136.8 9.6 78 1064-1145 466-546 (607)
78 1yqt_A RNAse L inhibitor; ATP- 99.1 1.9E-10 6.5E-15 136.0 8.9 78 1064-1145 396-476 (538)
79 3j16_B RLI1P; ribosome recycli 99.0 4.4E-10 1.5E-14 133.8 11.5 77 1064-1144 216-294 (608)
80 4f4c_A Multidrug resistance pr 99.0 3.2E-10 1.1E-14 148.6 8.7 78 1067-1150 1215-1292(1321)
81 3ux8_A Excinuclease ABC, A sub 99.0 3.7E-10 1.3E-14 138.7 8.5 77 1064-1144 197-276 (670)
82 3pih_A Uvrabc system protein A 99.0 3.9E-10 1.3E-14 139.1 7.3 80 1064-1144 800-880 (916)
83 2r6f_A Excinuclease ABC subuni 99.0 6.2E-10 2.1E-14 135.9 8.7 77 1065-1144 500-578 (972)
84 3ux8_A Excinuclease ABC, A sub 99.0 6.5E-10 2.2E-14 136.5 8.6 79 1065-1144 539-618 (670)
85 2ygr_A Uvrabc system protein A 98.9 7.6E-10 2.6E-14 135.7 8.5 77 1065-1144 517-595 (993)
86 3pih_A Uvrabc system protein A 98.9 8.9E-10 3E-14 136.0 9.1 78 1064-1144 459-538 (916)
87 2r6f_A Excinuclease ABC subuni 98.9 6.6E-10 2.2E-14 135.7 7.8 78 1064-1144 840-920 (972)
88 2iw3_A Elongation factor 3A; a 98.9 9.9E-10 3.4E-14 135.5 9.1 81 1062-1150 541-622 (986)
89 4f4c_A Multidrug resistance pr 98.9 7E-10 2.4E-14 145.4 8.2 79 1066-1150 551-629 (1321)
90 2ygr_A Uvrabc system protein A 98.9 9.4E-10 3.2E-14 134.9 7.8 78 1064-1144 858-938 (993)
91 3g5u_A MCG1178, multidrug resi 98.9 1.5E-09 5.1E-14 142.0 9.4 77 1067-1149 1169-1245(1284)
92 2vf7_A UVRA2, excinuclease ABC 98.9 1.2E-09 3.9E-14 133.8 6.7 77 1065-1144 726-805 (842)
93 2iw3_A Elongation factor 3A; a 98.9 1.6E-09 5.6E-14 133.5 7.8 78 1064-1149 896-974 (986)
94 3g5u_A MCG1178, multidrug resi 98.9 1.7E-09 5.9E-14 141.3 8.3 75 1065-1143 522-596 (1284)
95 2vf7_A UVRA2, excinuclease ABC 98.9 2.6E-09 8.7E-14 130.8 8.5 78 1064-1144 374-453 (842)
96 2o5v_A DNA replication and rep 98.8 3.2E-08 1.1E-12 109.8 14.6 76 1065-1145 260-341 (359)
97 1i84_S Smooth muscle myosin he 98.7 2.8E-08 9.4E-13 129.0 12.6 30 126-155 751-785 (1184)
98 1i84_S Smooth muscle myosin he 98.6 2.7E-07 9.2E-12 119.8 16.2 37 248-284 861-897 (1184)
99 4gp7_A Metallophosphoesterase; 98.5 1.9E-08 6.5E-13 100.3 1.6 72 1067-1142 81-169 (171)
100 1ye8_A Protein THEP1, hypothet 98.5 7.7E-08 2.6E-12 96.0 6.0 71 1064-1140 71-152 (178)
101 2npi_A Protein CLP1; CLP1-PCF1 98.1 6.9E-07 2.4E-11 102.9 3.1 67 1067-1140 233-313 (460)
102 3l51_B Structural maintenance 98.1 5.6E-09 1.9E-13 102.3 -12.8 127 556-719 16-160 (166)
103 1gxl_A SMC, chromosome segrega 97.9 2.1E-08 7E-13 104.3 -14.1 84 529-650 23-106 (213)
104 3b85_A Phosphate starvation-in 97.8 1.9E-06 6.5E-11 88.1 -1.8 56 1072-1136 107-162 (208)
105 1gxj_A SMC, chromosome segrega 97.7 5.5E-08 1.9E-12 98.4 -13.9 151 526-719 8-174 (186)
106 3na7_A HP0958; flagellar bioge 97.6 0.012 4.2E-07 61.7 24.8 8 1012-1019 178-185 (256)
107 3l51_A Structural maintenance 97.6 4.3E-07 1.5E-11 88.5 -8.7 110 596-717 31-161 (161)
108 3na7_A HP0958; flagellar bioge 97.6 0.0072 2.4E-07 63.5 22.9 40 341-380 44-83 (256)
109 3thx_B DNA mismatch repair pro 97.6 6.1E-05 2.1E-09 93.4 7.2 73 1065-1142 731-806 (918)
110 3thx_A DNA mismatch repair pro 97.6 9.5E-05 3.2E-09 92.0 8.8 77 1067-1145 719-798 (934)
111 1tf7_A KAIC; homohexamer, hexa 97.6 7.6E-05 2.6E-09 88.6 7.7 76 1066-1146 350-442 (525)
112 3b85_A Phosphate starvation-in 97.5 1.2E-05 4.2E-10 82.0 -1.2 36 13-48 9-45 (208)
113 3euj_A Chromosome partition pr 97.4 6.6E-05 2.3E-09 86.0 3.8 47 3-51 9-55 (483)
114 1htw_A HI0065; nucleotide-bind 97.4 0.0001 3.5E-09 71.4 4.0 26 24-49 31-57 (158)
115 1g6h_A High-affinity branched- 97.3 4.3E-05 1.5E-09 81.2 0.4 45 6-50 8-58 (257)
116 2wd5_B Structural maintenance 97.2 2.3E-06 7.8E-11 88.4 -9.8 65 557-650 47-112 (213)
117 3nwc_A SMC protein; structural 97.1 0.00016 5.4E-09 71.8 2.0 143 522-719 12-168 (189)
118 2v71_A Nuclear distribution pr 97.1 0.16 5.6E-06 48.9 22.5 34 729-762 11-44 (189)
119 1vpl_A ABC transporter, ATP-bi 97.0 0.00014 4.7E-09 76.9 1.4 28 23-50 38-66 (256)
120 2ihy_A ABC transporter, ATP-bi 97.0 0.00011 3.6E-09 78.8 0.5 24 26-49 48-71 (279)
121 1b0u_A Histidine permease; ABC 97.0 0.00014 4.8E-09 77.3 1.4 28 23-50 29-57 (262)
122 2v71_A Nuclear distribution pr 97.0 0.19 6.7E-06 48.4 22.7 16 734-749 23-38 (189)
123 1z6g_A Guanylate kinase; struc 97.0 0.00027 9.2E-09 73.1 3.3 24 26-49 24-47 (218)
124 1kgd_A CASK, peripheral plasma 97.0 0.00026 8.7E-09 70.8 3.0 28 22-49 2-29 (180)
125 1sgw_A Putative ABC transporte 97.0 0.00023 7.8E-09 72.8 2.6 24 26-49 36-59 (214)
126 2cbz_A Multidrug resistance-as 97.0 0.0002 6.8E-09 74.9 2.1 23 26-48 32-54 (237)
127 2olj_A Amino acid ABC transpor 97.0 0.0002 6.7E-09 75.9 2.1 27 23-49 47-74 (263)
128 3tif_A Uncharacterized ABC tra 97.0 0.00023 7.7E-09 74.3 2.4 28 23-50 28-56 (235)
129 2pcj_A ABC transporter, lipopr 97.0 0.00022 7.6E-09 73.8 2.2 24 26-49 31-54 (224)
130 1mv5_A LMRA, multidrug resista 97.0 0.0002 6.8E-09 75.3 1.6 27 23-49 25-52 (243)
131 1znw_A Guanylate kinase, GMP k 97.0 0.00032 1.1E-08 71.9 3.2 24 26-49 21-44 (207)
132 1ye8_A Protein THEP1, hypothet 97.0 0.00031 1.1E-08 69.7 2.9 24 27-50 2-25 (178)
133 2onk_A Molybdate/tungstate ABC 96.9 0.00031 1.1E-08 73.4 2.7 27 23-49 22-48 (240)
134 3gfo_A Cobalt import ATP-bindi 96.9 0.00023 8E-09 75.8 1.7 45 6-50 8-59 (275)
135 1z47_A CYSA, putative ABC-tran 96.9 0.00026 9E-09 78.0 2.0 23 26-48 42-64 (355)
136 2zu0_C Probable ATP-dependent 96.9 0.00032 1.1E-08 74.7 2.6 26 23-48 43-69 (267)
137 2bbs_A Cystic fibrosis transme 96.9 0.00021 7.1E-09 76.9 1.1 23 26-48 65-87 (290)
138 1v43_A Sugar-binding transport 96.9 0.00019 6.6E-09 79.7 0.8 43 6-48 12-60 (372)
139 2ixe_A Antigen peptide transpo 96.9 0.00029 9.9E-09 75.2 2.1 28 23-50 42-70 (271)
140 3a00_A Guanylate kinase, GMP k 96.9 0.00044 1.5E-08 69.5 3.3 26 25-50 1-26 (186)
141 2yz2_A Putative ABC transporte 96.9 0.00031 1E-08 74.9 2.1 27 23-49 30-57 (266)
142 2it1_A 362AA long hypothetical 96.9 0.00027 9.2E-09 78.2 1.7 23 26-48 30-52 (362)
143 1ji0_A ABC transporter; ATP bi 96.8 0.00035 1.2E-08 73.2 2.4 27 23-49 29-56 (240)
144 3rlf_A Maltose/maltodextrin im 96.8 0.00022 7.6E-09 79.1 0.9 44 6-49 4-53 (381)
145 1s96_A Guanylate kinase, GMP k 96.8 0.00047 1.6E-08 70.9 3.2 25 25-49 16-40 (219)
146 4gp7_A Metallophosphoesterase; 96.8 0.00052 1.8E-08 67.8 3.4 20 25-44 9-28 (171)
147 4g1u_C Hemin import ATP-bindin 96.8 0.0003 1E-08 74.7 1.8 25 26-50 38-62 (266)
148 3ney_A 55 kDa erythrocyte memb 96.8 0.00051 1.7E-08 68.7 3.2 33 17-49 11-43 (197)
149 2pze_A Cystic fibrosis transme 96.8 0.00039 1.3E-08 72.2 2.4 24 26-49 35-58 (229)
150 2jeo_A Uridine-cytidine kinase 96.8 0.00053 1.8E-08 72.4 3.4 28 23-50 22-50 (245)
151 2d2e_A SUFC protein; ABC-ATPas 96.8 0.00047 1.6E-08 72.7 2.9 26 23-48 26-52 (250)
152 1tq4_A IIGP1, interferon-induc 96.8 8.3E-05 2.8E-09 83.8 -3.2 73 1070-1142 155-248 (413)
153 2qi9_C Vitamin B12 import ATP- 96.8 0.00042 1.4E-08 72.8 2.4 27 23-49 23-50 (249)
154 2ff7_A Alpha-hemolysin translo 96.8 0.00044 1.5E-08 72.7 2.4 24 26-49 36-59 (247)
155 1lvg_A Guanylate kinase, GMP k 96.8 0.0006 2.1E-08 69.2 3.3 25 25-49 4-28 (198)
156 1g29_1 MALK, maltose transport 96.8 0.00033 1.1E-08 78.1 1.4 23 26-48 30-52 (372)
157 2nq2_C Hypothetical ABC transp 96.7 0.00048 1.7E-08 72.6 2.3 24 26-49 32-55 (253)
158 3tr0_A Guanylate kinase, GMP k 96.7 0.00065 2.2E-08 69.5 3.2 25 25-49 7-31 (205)
159 2ghi_A Transport protein; mult 96.7 0.00051 1.8E-08 72.8 2.4 27 23-49 43-70 (260)
160 2eyu_A Twitching motility prot 96.7 0.00067 2.3E-08 71.9 3.0 25 25-49 25-49 (261)
161 3fvq_A Fe(3+) IONS import ATP- 96.7 0.00031 1E-08 77.4 0.4 24 26-49 31-54 (359)
162 3c8u_A Fructokinase; YP_612366 96.7 0.00068 2.3E-08 69.5 2.9 26 25-50 22-47 (208)
163 2pjz_A Hypothetical protein ST 96.7 0.00045 1.5E-08 73.2 1.4 27 23-49 28-54 (263)
164 3euj_A Chromosome partition pr 96.7 0.0044 1.5E-07 71.0 9.7 86 1065-1154 375-475 (483)
165 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.00077 2.6E-08 74.2 3.1 62 1072-1144 225-287 (330)
166 3asz_A Uridine kinase; cytidin 96.6 0.00075 2.6E-08 69.5 2.8 26 25-50 6-31 (211)
167 1ewq_A DNA mismatch repair pro 96.6 0.0011 3.8E-08 80.9 4.7 67 1068-1138 634-704 (765)
168 2qag_B Septin-6, protein NEDD5 96.5 0.00077 2.6E-08 75.8 2.5 45 4-48 15-65 (427)
169 3tui_C Methionine import ATP-b 96.5 0.00069 2.4E-08 74.6 2.1 24 26-49 55-78 (366)
170 4a74_A DNA repair and recombin 96.5 0.001 3.4E-08 69.6 2.8 29 22-50 21-50 (231)
171 3vkg_A Dynein heavy chain, cyt 96.5 0.7 2.4E-05 64.6 30.5 23 28-50 909-931 (3245)
172 2i3b_A HCR-ntpase, human cance 96.5 0.0014 4.7E-08 65.6 3.4 23 27-49 3-25 (189)
173 1wb9_A DNA mismatch repair pro 96.4 0.0016 5.4E-08 80.1 4.6 73 1067-1144 667-742 (800)
174 3vkg_A Dynein heavy chain, cyt 96.4 0.56 1.9E-05 65.5 29.4 90 395-484 2011-2103(3245)
175 2yyz_A Sugar ABC transporter, 96.4 0.0011 3.9E-08 73.2 2.9 23 26-48 30-52 (359)
176 3sop_A Neuronal-specific septi 96.4 0.0011 3.8E-08 70.6 2.8 23 28-50 5-27 (270)
177 2v9p_A Replication protein E1; 96.4 0.0013 4.5E-08 70.8 3.3 24 26-49 127-150 (305)
178 4eun_A Thermoresistant glucoki 96.4 0.0015 5E-08 66.5 3.4 27 25-51 29-55 (200)
179 3jvv_A Twitching mobility prot 96.4 0.0013 4.4E-08 73.0 3.0 26 24-49 122-147 (356)
180 3aez_A Pantothenate kinase; tr 96.4 0.0013 4.4E-08 71.7 2.9 26 25-50 90-115 (312)
181 1cr0_A DNA primase/helicase; R 96.4 0.0047 1.6E-07 67.2 7.4 74 1068-1146 128-234 (296)
182 2ehv_A Hypothetical protein PH 96.3 0.0014 4.7E-08 69.6 2.9 21 26-46 31-51 (251)
183 3lnc_A Guanylate kinase, GMP k 96.3 0.0013 4.4E-08 68.7 2.6 24 26-49 28-52 (231)
184 3d31_A Sulfate/molybdate ABC t 96.3 0.0011 3.6E-08 73.1 1.9 23 26-48 27-49 (348)
185 2o8b_B DNA mismatch repair pro 96.3 0.0021 7.3E-08 81.1 4.8 71 1066-1141 848-922 (1022)
186 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.0093 3.2E-07 62.2 9.0 75 1069-1147 103-192 (235)
187 2bbw_A Adenylate kinase 4, AK4 96.3 0.0018 6.1E-08 68.4 3.3 28 25-52 27-54 (246)
188 1zp6_A Hypothetical protein AT 96.3 0.0014 4.9E-08 66.1 2.3 24 26-49 10-33 (191)
189 2cvh_A DNA repair and recombin 96.2 0.011 3.6E-07 61.1 9.0 80 1067-1147 82-185 (220)
190 3nh6_A ATP-binding cassette SU 96.2 0.0011 3.7E-08 71.7 1.3 24 26-49 81-104 (306)
191 1rj9_A FTSY, signal recognitio 96.2 0.002 6.8E-08 69.8 3.4 27 24-50 101-127 (304)
192 3sop_A Neuronal-specific septi 96.2 0.0003 1E-08 75.0 -3.2 61 1065-1136 94-154 (270)
193 1oxx_K GLCV, glucose, ABC tran 96.2 0.0011 3.7E-08 73.3 1.2 23 26-48 32-54 (353)
194 3b9q_A Chloroplast SRP recepto 96.2 0.002 6.7E-08 69.8 2.9 25 25-49 100-124 (302)
195 2bdt_A BH3686; alpha-beta prot 96.1 0.0023 8E-08 64.3 3.1 25 26-50 3-27 (189)
196 3o0z_A RHO-associated protein 96.1 0.92 3.1E-05 42.5 23.9 40 415-454 93-132 (168)
197 2qag_C Septin-7; cell cycle, c 96.1 0.0019 6.4E-08 73.1 2.5 42 6-48 12-54 (418)
198 1kag_A SKI, shikimate kinase I 96.1 0.0027 9.4E-08 62.7 3.5 26 26-51 5-30 (173)
199 1p9r_A General secretion pathw 96.1 0.0022 7.5E-08 72.7 3.0 26 25-50 167-192 (418)
200 3tau_A Guanylate kinase, GMP k 96.1 0.0024 8.2E-08 65.4 2.9 26 25-50 8-33 (208)
201 2kjq_A DNAA-related protein; s 96.0 0.0032 1.1E-07 60.3 3.3 25 25-49 36-60 (149)
202 1sq5_A Pantothenate kinase; P- 96.0 0.0026 8.9E-08 69.5 2.8 26 25-50 80-105 (308)
203 3tqc_A Pantothenate kinase; bi 96.0 0.0028 9.7E-08 68.8 3.0 26 25-50 92-117 (321)
204 2qnr_A Septin-2, protein NEDD5 96.0 0.0018 6.2E-08 70.4 1.4 33 13-46 7-39 (301)
205 1tq4_A IIGP1, interferon-induc 95.9 0.0024 8.1E-08 72.0 2.3 24 26-49 70-93 (413)
206 3gd7_A Fusion complex of cysti 95.9 0.0027 9.3E-08 71.0 2.7 22 26-47 48-69 (390)
207 3e70_C DPA, signal recognition 95.9 0.003 1E-07 69.1 3.0 26 25-50 129-154 (328)
208 2ewv_A Twitching motility prot 95.9 0.0029 9.9E-08 70.9 2.9 25 25-49 136-160 (372)
209 2og2_A Putative signal recogni 95.9 0.003 1E-07 69.8 3.0 25 25-49 157-181 (359)
210 2j41_A Guanylate kinase; GMP, 95.9 0.0034 1.1E-07 64.2 2.9 25 25-49 6-30 (207)
211 3ec2_A DNA replication protein 95.8 0.0036 1.2E-07 62.4 2.9 25 25-49 38-62 (180)
212 1cr0_A DNA primase/helicase; R 95.8 0.0025 8.6E-08 69.4 1.8 28 22-49 31-59 (296)
213 1knq_A Gluconate kinase; ALFA/ 95.8 0.0044 1.5E-07 61.3 3.4 27 25-51 8-34 (175)
214 3uie_A Adenylyl-sulfate kinase 95.8 0.0035 1.2E-07 63.7 2.6 26 25-50 25-50 (200)
215 2w0m_A SSO2452; RECA, SSPF, un 95.8 0.0039 1.3E-07 65.2 2.9 40 9-49 7-47 (235)
216 2yhs_A FTSY, cell division pro 95.8 0.0038 1.3E-07 71.2 2.9 25 25-49 293-317 (503)
217 2ehv_A Hypothetical protein PH 95.7 0.01 3.4E-07 62.7 5.9 57 1090-1146 134-207 (251)
218 2gza_A Type IV secretion syste 95.7 0.0041 1.4E-07 69.4 2.9 24 26-49 176-199 (361)
219 2x8a_A Nuclear valosin-contain 95.7 0.0051 1.7E-07 65.8 3.4 28 23-51 43-70 (274)
220 2pt7_A CAG-ALFA; ATPase, prote 95.7 0.0034 1.1E-07 69.1 2.0 25 25-49 171-195 (330)
221 2vp4_A Deoxynucleoside kinase; 95.6 0.0036 1.2E-07 65.2 2.0 23 25-47 20-42 (230)
222 4e22_A Cytidylate kinase; P-lo 95.6 0.0055 1.9E-07 64.7 3.4 28 26-53 28-55 (252)
223 2yv5_A YJEQ protein; hydrolase 95.6 0.0048 1.6E-07 67.0 3.0 25 25-50 165-189 (302)
224 1nlf_A Regulatory protein REPA 95.6 0.014 4.7E-07 62.8 6.4 63 1065-1134 114-183 (279)
225 2f1r_A Molybdopterin-guanine d 95.5 0.0032 1.1E-07 61.7 1.2 25 26-50 3-27 (171)
226 3b5x_A Lipid A export ATP-bind 95.5 0.0047 1.6E-07 74.1 2.5 25 26-50 370-394 (582)
227 2rcn_A Probable GTPase ENGC; Y 95.4 0.0063 2.1E-07 66.9 2.9 25 25-49 215-239 (358)
228 2qm8_A GTPase/ATPase; G protei 95.3 0.0066 2.3E-07 67.0 2.9 25 25-49 55-79 (337)
229 1nlf_A Regulatory protein REPA 95.3 0.0065 2.2E-07 65.4 2.7 28 22-49 26-54 (279)
230 1lw7_A Transcriptional regulat 95.3 0.0061 2.1E-07 68.5 2.5 26 26-51 171-196 (365)
231 2if2_A Dephospho-COA kinase; a 95.3 0.0068 2.3E-07 61.8 2.6 24 27-51 3-26 (204)
232 2npi_A Protein CLP1; CLP1-PCF1 95.3 0.0071 2.4E-07 69.5 3.0 24 26-49 139-162 (460)
233 1rz3_A Hypothetical protein rb 95.2 0.0076 2.6E-07 61.2 2.8 25 25-49 22-46 (201)
234 1ixz_A ATP-dependent metallopr 95.2 0.0094 3.2E-07 63.1 3.4 26 24-50 49-74 (254)
235 2fxo_A Myosin heavy chain, car 95.1 1.9 6.6E-05 39.3 19.5 58 326-383 66-123 (129)
236 1jjv_A Dephospho-COA kinase; P 95.1 0.0077 2.6E-07 61.5 2.4 24 27-51 4-27 (206)
237 2dpy_A FLII, flagellum-specifi 95.0 0.0095 3.2E-07 68.0 3.2 29 22-50 153-182 (438)
238 1cke_A CK, MSSA, protein (cyti 95.0 0.011 3.7E-07 61.4 3.3 26 26-51 6-31 (227)
239 3vaa_A Shikimate kinase, SK; s 95.0 0.012 4.1E-07 59.6 3.5 26 27-52 27-52 (199)
240 2yl4_A ATP-binding cassette SU 95.0 0.0076 2.6E-07 72.5 2.3 24 26-49 371-394 (595)
241 2cvh_A DNA repair and recombin 95.0 0.011 3.9E-07 60.8 3.4 26 22-47 16-42 (220)
242 1in4_A RUVB, holliday junction 95.0 0.013 4.4E-07 64.9 3.9 27 25-51 51-77 (334)
243 1z6g_A Guanylate kinase; struc 95.0 0.00031 1.1E-08 72.6 -8.7 71 1068-1142 121-205 (218)
244 3b60_A Lipid A export ATP-bind 94.9 0.0081 2.8E-07 72.0 2.2 24 26-49 370-393 (582)
245 1oix_A RAS-related protein RAB 94.9 0.0092 3.1E-07 60.0 2.3 22 28-49 32-53 (191)
246 3u1c_A Tropomyosin alpha-1 cha 94.9 1.5 5E-05 38.0 15.8 9 898-906 84-92 (101)
247 2obl_A ESCN; ATPase, hydrolase 94.9 0.01 3.6E-07 65.4 2.9 28 22-49 67-95 (347)
248 1iy2_A ATP-dependent metallopr 94.9 0.012 4.2E-07 63.2 3.4 26 24-50 73-98 (278)
249 2oap_1 GSPE-2, type II secreti 94.9 0.0092 3.1E-07 69.6 2.6 24 26-49 261-284 (511)
250 3szr_A Interferon-induced GTP- 94.9 0.0093 3.2E-07 71.5 2.7 27 23-49 43-69 (608)
251 1wb9_A DNA mismatch repair pro 94.9 0.011 3.8E-07 72.7 3.3 24 25-48 607-630 (800)
252 2dfs_A Myosin-5A; myosin-V, in 94.8 0.71 2.4E-05 58.6 19.6 17 29-45 160-176 (1080)
253 1ewq_A DNA mismatch repair pro 94.8 0.012 3.9E-07 72.0 3.1 25 25-49 576-600 (765)
254 3qf4_B Uncharacterized ABC tra 94.8 0.0096 3.3E-07 71.5 2.4 24 26-49 382-405 (598)
255 3t61_A Gluconokinase; PSI-biol 94.8 0.015 5.2E-07 59.0 3.6 27 25-51 18-44 (202)
256 1nij_A Hypothetical protein YJ 94.8 0.0097 3.3E-07 65.2 2.2 21 27-47 6-26 (318)
257 1u0l_A Probable GTPase ENGC; p 94.8 0.011 3.9E-07 64.1 2.7 25 25-49 169-193 (301)
258 2f9l_A RAB11B, member RAS onco 94.7 0.011 3.9E-07 59.8 2.5 21 28-48 8-28 (199)
259 2v9p_A Replication protein E1; 94.7 0.00099 3.4E-08 71.7 -5.7 56 1067-1149 198-253 (305)
260 1svm_A Large T antigen; AAA+ f 94.7 0.015 5E-07 64.8 3.5 27 25-51 169-195 (377)
261 2px0_A Flagellar biosynthesis 94.7 0.014 4.8E-07 62.9 3.2 27 24-50 104-130 (296)
262 1t9h_A YLOQ, probable GTPase E 94.6 0.006 2E-07 65.8 0.1 24 25-48 173-196 (307)
263 1tf7_A KAIC; homohexamer, hexa 94.6 0.013 4.5E-07 69.2 2.9 54 1092-1145 139-208 (525)
264 4a82_A Cystic fibrosis transme 94.6 0.0083 2.8E-07 71.8 1.2 24 26-49 368-391 (578)
265 2wd5_A Structural maintenance 94.5 0.0095 3.2E-07 61.9 1.4 49 596-649 69-117 (233)
266 3thx_B DNA mismatch repair pro 94.5 0.012 4.1E-07 73.0 2.3 22 26-47 674-695 (918)
267 2qt1_A Nicotinamide riboside k 94.5 0.018 6.1E-07 58.7 3.2 29 21-49 16-45 (207)
268 2qor_A Guanylate kinase; phosp 94.5 0.019 6.6E-07 58.3 3.5 26 25-50 12-37 (204)
269 3b9q_A Chloroplast SRP recepto 94.5 0.01 3.5E-07 64.2 1.4 58 1064-1133 199-258 (302)
270 1vma_A Cell division protein F 94.3 0.018 6.2E-07 62.2 2.9 26 25-50 104-129 (306)
271 3thx_A DNA mismatch repair pro 94.3 0.018 6E-07 71.9 3.2 21 26-46 663-683 (934)
272 1pui_A ENGB, probable GTP-bind 94.3 0.012 4E-07 60.3 1.3 25 22-46 22-47 (210)
273 2og2_A Putative signal recogni 94.2 0.017 5.8E-07 63.7 2.5 58 1064-1133 256-315 (359)
274 1n0w_A DNA repair protein RAD5 94.2 0.021 7.1E-07 59.9 3.1 23 26-48 25-47 (243)
275 3qf4_A ABC transporter, ATP-bi 94.2 0.013 4.5E-07 70.1 1.7 24 26-49 370-393 (587)
276 2eyu_A Twitching motility prot 94.2 0.036 1.2E-06 58.5 4.9 57 1077-1143 88-144 (261)
277 2o8b_B DNA mismatch repair pro 94.1 0.018 6.3E-07 72.7 2.9 20 26-45 790-809 (1022)
278 1znw_A Guanylate kinase, GMP k 94.1 0.0037 1.3E-07 63.9 -2.9 54 1090-1143 140-200 (207)
279 2dr3_A UPF0273 protein PH0284; 94.1 0.02 6.9E-07 60.2 2.7 27 22-48 19-46 (247)
280 3u59_A Tropomyosin beta chain; 94.0 2.8 9.5E-05 36.3 15.8 8 899-906 85-92 (101)
281 1via_A Shikimate kinase; struc 93.9 0.025 8.7E-07 55.8 3.0 25 27-51 6-30 (175)
282 2pez_A Bifunctional 3'-phospho 93.9 0.026 8.8E-07 56.0 3.0 25 25-49 5-29 (179)
283 3nwj_A ATSK2; P loop, shikimat 93.9 0.032 1.1E-06 58.3 3.8 26 26-51 49-74 (250)
284 1ega_A Protein (GTP-binding pr 93.9 0.019 6.4E-07 62.3 2.0 25 23-47 6-30 (301)
285 1ex7_A Guanylate kinase; subst 93.8 0.025 8.4E-07 56.0 2.5 22 27-48 3-24 (186)
286 4a74_A DNA repair and recombin 93.6 0.094 3.2E-06 54.2 6.9 58 1089-1146 123-199 (231)
287 1np6_A Molybdopterin-guanine d 93.6 0.032 1.1E-06 54.7 2.9 24 26-49 7-30 (174)
288 1ni3_A YCHF GTPase, YCHF GTP-b 93.5 0.034 1.2E-06 62.1 3.4 26 22-47 16-42 (392)
289 2ze6_A Isopentenyl transferase 93.5 0.032 1.1E-06 58.7 3.0 25 27-51 3-27 (253)
290 1odf_A YGR205W, hypothetical 3 93.5 0.028 9.7E-07 60.3 2.6 26 25-50 31-56 (290)
291 2i3b_A HCR-ntpase, human cance 93.5 0.022 7.5E-07 56.8 1.6 63 1067-1133 81-150 (189)
292 3r20_A Cytidylate kinase; stru 93.4 0.038 1.3E-06 56.8 3.3 27 25-51 9-35 (233)
293 3oja_B Anopheles plasmodium-re 93.4 0.4 1.4E-05 57.7 12.9 17 730-746 458-474 (597)
294 3kb2_A SPBC2 prophage-derived 93.4 0.035 1.2E-06 54.5 3.0 25 27-51 3-27 (173)
295 2wji_A Ferrous iron transport 93.4 0.032 1.1E-06 54.4 2.5 20 27-46 5-24 (165)
296 2www_A Methylmalonic aciduria 93.3 0.034 1.2E-06 61.6 2.9 25 25-49 74-98 (349)
297 2b9c_A Striated-muscle alpha t 93.3 1.8 6.1E-05 40.3 14.0 68 836-903 51-118 (147)
298 1pzn_A RAD51, DNA repair and r 93.3 0.033 1.1E-06 61.7 2.8 24 26-49 132-155 (349)
299 1sxj_E Activator 1 40 kDa subu 93.2 0.071 2.4E-06 59.5 5.5 43 1090-1133 133-175 (354)
300 2dpy_A FLII, flagellum-specifi 93.2 0.018 6.3E-07 65.6 0.5 62 1067-1143 256-327 (438)
301 3cm0_A Adenylate kinase; ATP-b 93.1 0.043 1.5E-06 54.7 3.0 25 27-51 6-30 (186)
302 1zu4_A FTSY; GTPase, signal re 93.0 0.041 1.4E-06 59.9 3.0 26 25-50 105-130 (320)
303 3ec2_A DNA replication protein 92.9 0.08 2.7E-06 52.4 4.8 43 1090-1132 99-143 (180)
304 3oja_B Anopheles plasmodium-re 92.9 0.92 3.2E-05 54.5 15.1 35 731-765 452-486 (597)
305 2dfs_A Myosin-5A; myosin-V, in 92.8 27 0.00093 44.3 38.7 14 74-87 654-667 (1080)
306 1q3t_A Cytidylate kinase; nucl 92.8 0.055 1.9E-06 56.3 3.4 26 26-51 17-42 (236)
307 3hr8_A Protein RECA; alpha and 92.8 0.046 1.6E-06 60.2 2.8 28 22-49 57-85 (356)
308 1pzn_A RAD51, DNA repair and r 92.7 0.039 1.3E-06 61.1 2.2 62 1071-1133 208-287 (349)
309 3cr8_A Sulfate adenylyltranfer 92.7 0.029 1E-06 65.8 1.2 25 27-51 371-395 (552)
310 2gj8_A MNME, tRNA modification 92.6 0.044 1.5E-06 53.8 2.3 20 28-47 7-26 (172)
311 1xjc_A MOBB protein homolog; s 92.6 0.061 2.1E-06 52.0 3.2 25 26-50 5-29 (169)
312 2wjg_A FEOB, ferrous iron tran 92.6 0.048 1.6E-06 54.3 2.5 20 27-46 9-28 (188)
313 2p5t_B PEZT; postsegregational 92.5 0.042 1.4E-06 57.9 2.1 26 25-50 32-57 (253)
314 2yvu_A Probable adenylyl-sulfa 92.5 0.05 1.7E-06 54.2 2.6 26 25-50 13-38 (186)
315 1ls1_A Signal recognition part 92.5 0.055 1.9E-06 58.3 3.0 27 24-50 97-123 (295)
316 1ly1_A Polynucleotide kinase; 92.4 0.05 1.7E-06 53.9 2.4 25 26-50 3-28 (181)
317 3lw7_A Adenylate kinase relate 92.4 0.06 2E-06 53.0 3.0 25 27-52 3-27 (179)
318 1qhx_A CPT, protein (chloramph 92.3 0.068 2.3E-06 52.7 3.2 27 25-51 3-29 (178)
319 1vht_A Dephospho-COA kinase; s 92.2 0.059 2E-06 55.3 2.7 25 26-51 5-29 (218)
320 1lv7_A FTSH; alpha/beta domain 92.2 0.069 2.4E-06 56.4 3.3 24 27-50 47-70 (257)
321 1gvn_B Zeta; postsegregational 92.2 0.056 1.9E-06 58.1 2.5 26 24-49 32-57 (287)
322 3aez_A Pantothenate kinase; tr 92.1 0.005 1.7E-07 67.0 -5.8 38 1065-1106 172-209 (312)
323 3lda_A DNA repair protein RAD5 92.0 0.07 2.4E-06 59.9 3.2 26 24-49 177-202 (400)
324 3kl4_A SRP54, signal recogniti 91.9 0.063 2.2E-06 60.7 2.7 27 24-50 96-122 (433)
325 3trf_A Shikimate kinase, SK; a 91.9 0.09 3.1E-06 52.2 3.6 27 26-52 6-32 (185)
326 1m7g_A Adenylylsulfate kinase; 91.9 0.066 2.3E-06 54.6 2.6 26 25-50 25-50 (211)
327 2dhr_A FTSH; AAA+ protein, hex 91.9 0.086 2.9E-06 61.0 3.8 25 25-50 65-89 (499)
328 2obl_A ESCN; ATPase, hydrolase 91.8 0.033 1.1E-06 61.4 0.3 65 1065-1144 167-239 (347)
329 3iij_A Coilin-interacting nucl 91.8 0.097 3.3E-06 51.7 3.7 27 25-51 11-37 (180)
330 2zej_A Dardarin, leucine-rich 91.7 0.058 2E-06 53.6 2.0 19 28-46 5-23 (184)
331 2rhm_A Putative kinase; P-loop 91.7 0.076 2.6E-06 53.2 2.9 27 25-51 5-31 (193)
332 1sxj_E Activator 1 40 kDa subu 91.7 0.082 2.8E-06 59.0 3.3 22 28-49 39-60 (354)
333 2jaq_A Deoxyguanosine kinase; 91.7 0.08 2.7E-06 53.6 3.0 25 27-51 2-26 (205)
334 2b9c_A Striated-muscle alpha t 91.7 4.2 0.00014 37.8 14.2 31 869-899 91-121 (147)
335 2p67_A LAO/AO transport system 91.6 0.073 2.5E-06 58.8 2.8 25 25-49 56-80 (341)
336 1kht_A Adenylate kinase; phosp 91.4 0.086 2.9E-06 52.7 2.8 25 26-50 4-28 (192)
337 4eaq_A DTMP kinase, thymidylat 91.2 0.096 3.3E-06 54.1 3.0 25 26-50 27-51 (229)
338 1tev_A UMP-CMP kinase; ploop, 91.2 0.094 3.2E-06 52.5 2.9 27 25-51 3-29 (196)
339 2w58_A DNAI, primosome compone 91.1 0.11 3.7E-06 52.5 3.2 25 26-50 55-79 (202)
340 3ake_A Cytidylate kinase; CMP 91.0 0.12 3.9E-06 52.5 3.3 25 27-51 4-28 (208)
341 1pui_A ENGB, probable GTP-bind 90.9 0.12 4E-06 52.6 3.2 50 1066-1119 146-196 (210)
342 2c95_A Adenylate kinase 1; tra 90.8 0.12 4.1E-06 51.8 3.2 27 25-51 9-35 (196)
343 1gtv_A TMK, thymidylate kinase 90.7 0.052 1.8E-06 55.5 0.4 24 27-50 2-25 (214)
344 1j8m_F SRP54, signal recogniti 90.7 0.11 3.7E-06 55.9 2.9 26 25-50 98-123 (297)
345 1y63_A LMAJ004144AAA protein; 90.6 0.15 5.3E-06 50.5 3.8 26 26-51 11-37 (184)
346 3lxx_A GTPase IMAP family memb 90.6 0.1 3.4E-06 54.4 2.5 18 29-46 33-50 (239)
347 2vli_A Antibiotic resistance p 90.5 0.12 4.3E-06 51.0 3.0 28 25-52 5-32 (183)
348 3m6a_A ATP-dependent protease 90.5 0.13 4.6E-06 60.6 3.8 27 25-51 108-134 (543)
349 2ffh_A Protein (FFH); SRP54, s 90.5 0.11 3.9E-06 58.5 3.0 27 24-50 97-123 (425)
350 3t34_A Dynamin-related protein 90.4 0.14 4.8E-06 57.1 3.7 21 27-47 36-56 (360)
351 3foz_A TRNA delta(2)-isopenten 90.3 0.12 4.2E-06 55.0 2.8 26 25-50 10-35 (316)
352 3exa_A TRNA delta(2)-isopenten 90.3 0.11 3.7E-06 55.4 2.4 26 25-50 3-28 (322)
353 1udx_A The GTP-binding protein 90.2 0.087 3E-06 59.4 1.7 20 27-46 159-178 (416)
354 3jvv_A Twitching mobility prot 90.1 0.22 7.7E-06 54.9 4.9 50 1089-1144 194-243 (356)
355 1nks_A Adenylate kinase; therm 90.1 0.11 3.9E-06 51.8 2.3 24 27-50 3-26 (194)
356 3bos_A Putative DNA replicatio 90.1 0.13 4.6E-06 53.4 3.0 26 25-50 52-77 (242)
357 1zak_A Adenylate kinase; ATP:A 90.1 0.15 5.3E-06 52.3 3.4 27 25-51 5-31 (222)
358 3d3q_A TRNA delta(2)-isopenten 90.0 0.14 4.7E-06 55.7 3.0 24 27-50 9-32 (340)
359 2z0h_A DTMP kinase, thymidylat 90.0 0.15 5E-06 51.2 3.1 23 27-49 2-24 (197)
360 2iyv_A Shikimate kinase, SK; t 90.0 0.19 6.4E-06 49.8 3.8 26 27-52 4-29 (184)
361 1e6c_A Shikimate kinase; phosp 89.9 0.16 5.6E-06 49.6 3.3 25 27-51 4-28 (173)
362 1sxj_C Activator 1 40 kDa subu 89.9 0.15 5.1E-06 56.4 3.3 24 28-51 49-72 (340)
363 3iev_A GTP-binding protein ERA 89.9 0.11 3.7E-06 56.5 2.0 25 22-46 7-31 (308)
364 3k53_A Ferrous iron transport 89.8 0.12 4E-06 55.1 2.2 19 28-46 6-24 (271)
365 1uf9_A TT1252 protein; P-loop, 89.7 0.13 4.3E-06 52.0 2.3 26 25-51 8-33 (203)
366 4ag6_A VIRB4 ATPase, type IV s 89.7 0.17 5.6E-06 57.3 3.5 25 25-49 35-59 (392)
367 2pt5_A Shikimate kinase, SK; a 89.7 0.16 5.5E-06 49.4 3.0 24 28-51 3-26 (168)
368 2ged_A SR-beta, signal recogni 89.7 0.13 4.6E-06 51.3 2.5 21 28-48 51-71 (193)
369 2ga8_A Hypothetical 39.9 kDa p 89.7 0.13 4.5E-06 55.9 2.5 24 28-51 27-50 (359)
370 3llm_A ATP-dependent RNA helic 89.6 0.15 5.3E-06 52.8 3.0 23 25-47 76-98 (235)
371 3fb4_A Adenylate kinase; psych 89.6 0.16 5.5E-06 51.9 3.0 24 28-51 3-26 (216)
372 2cdn_A Adenylate kinase; phosp 89.6 0.22 7.5E-06 50.1 4.0 28 25-52 20-47 (201)
373 1svi_A GTP-binding protein YSX 89.5 0.16 5.6E-06 50.7 3.0 20 27-46 25-44 (195)
374 2qtf_A Protein HFLX, GTP-bindi 89.5 0.13 4.5E-06 57.1 2.4 20 27-46 181-200 (364)
375 3cf0_A Transitional endoplasmi 89.5 0.18 6E-06 54.7 3.4 27 25-51 49-75 (301)
376 2bwj_A Adenylate kinase 5; pho 89.5 0.17 5.9E-06 50.8 3.1 27 25-51 12-38 (199)
377 1qf9_A UMP/CMP kinase, protein 89.4 0.16 5.5E-06 50.7 2.8 26 26-51 7-32 (194)
378 2qag_A Septin-2, protein NEDD5 89.4 0.12 4.2E-06 57.4 2.0 17 29-45 41-57 (361)
379 2xb4_A Adenylate kinase; ATP-b 89.3 0.17 5.8E-06 52.0 3.0 24 28-51 3-26 (223)
380 3crm_A TRNA delta(2)-isopenten 89.2 0.17 5.7E-06 54.6 2.8 25 26-50 6-30 (323)
381 2grj_A Dephospho-COA kinase; T 89.2 0.19 6.4E-06 50.1 3.0 25 27-51 14-38 (192)
382 3dm5_A SRP54, signal recogniti 89.1 0.17 5.8E-06 57.1 3.0 26 25-50 100-125 (443)
383 1zd8_A GTP:AMP phosphotransfer 89.1 0.18 6.3E-06 51.9 3.0 26 26-51 8-33 (227)
384 3pqc_A Probable GTP-binding pr 89.1 0.23 7.9E-06 49.5 3.7 20 28-47 26-45 (195)
385 2r6a_A DNAB helicase, replicat 89.1 0.11 3.8E-06 60.0 1.4 38 10-49 189-227 (454)
386 1z2a_A RAS-related protein RAB 89.0 0.17 5.7E-06 49.1 2.5 19 29-47 9-27 (168)
387 1mky_A Probable GTP-binding pr 89.0 0.15 5.1E-06 58.6 2.5 20 27-46 182-201 (439)
388 1ukz_A Uridylate kinase; trans 89.0 0.22 7.6E-06 50.2 3.5 26 26-51 16-41 (203)
389 3dl0_A Adenylate kinase; phosp 88.9 0.19 6.4E-06 51.4 2.9 24 28-51 3-26 (216)
390 2dyk_A GTP-binding protein; GT 88.9 0.17 5.8E-06 48.6 2.5 19 29-47 5-23 (161)
391 2plr_A DTMP kinase, probable t 88.7 0.2 6.7E-06 51.0 2.9 26 26-51 5-30 (213)
392 1jbk_A CLPB protein; beta barr 88.7 0.23 7.8E-06 49.3 3.3 26 25-50 43-68 (195)
393 3b9p_A CG5977-PA, isoform A; A 88.5 0.22 7.6E-06 53.8 3.4 26 25-50 54-79 (297)
394 2v3c_C SRP54, signal recogniti 88.5 0.23 7.8E-06 56.4 3.5 25 25-49 99-123 (432)
395 1fzq_A ADP-ribosylation factor 88.5 0.17 5.7E-06 50.0 2.2 19 28-46 19-37 (181)
396 2pbr_A DTMP kinase, thymidylat 88.5 0.23 8E-06 49.5 3.3 22 28-49 3-24 (195)
397 1zuh_A Shikimate kinase; alpha 88.5 0.24 8.3E-06 48.1 3.3 27 26-52 8-34 (168)
398 1ek0_A Protein (GTP-binding pr 88.4 0.19 6.5E-06 48.7 2.5 19 29-47 7-25 (170)
399 1kao_A RAP2A; GTP-binding prot 88.4 0.19 6.5E-06 48.5 2.5 19 29-47 7-25 (167)
400 1m2o_B GTP-binding protein SAR 88.4 0.18 6.2E-06 50.3 2.3 21 27-47 25-45 (190)
401 3eph_A TRNA isopentenyltransfe 88.4 0.2 6.8E-06 55.5 2.8 26 25-50 2-27 (409)
402 3tnu_B Keratin, type II cytosk 88.4 12 0.0004 34.1 14.2 35 727-761 35-69 (129)
403 1e4v_A Adenylate kinase; trans 88.3 0.21 7.3E-06 50.9 2.8 23 29-51 4-26 (214)
404 1g16_A RAS-related protein SEC 88.3 0.19 6.4E-06 48.8 2.3 19 29-47 7-25 (170)
405 1ky3_A GTP-binding protein YPT 88.2 0.2 6.8E-06 49.3 2.5 20 29-48 12-31 (182)
406 1aky_A Adenylate kinase; ATP:A 88.2 0.26 8.8E-06 50.5 3.4 25 27-51 6-30 (220)
407 1z0j_A RAB-22, RAS-related pro 88.2 0.2 6.9E-06 48.5 2.5 19 29-47 10-28 (170)
408 2ohf_A Protein OLA1, GTP-bindi 88.1 0.19 6.4E-06 55.9 2.4 19 28-46 25-43 (396)
409 1z08_A RAS-related protein RAB 88.0 0.21 7.1E-06 48.5 2.5 20 29-48 10-29 (170)
410 1njg_A DNA polymerase III subu 88.0 0.23 7.9E-06 51.6 3.0 27 25-51 45-71 (250)
411 1l8q_A Chromosomal replication 88.0 0.26 9E-06 54.0 3.5 24 26-49 38-61 (324)
412 2ce2_X GTPase HRAS; signaling 88.0 0.2 6.9E-06 48.2 2.3 20 28-47 6-25 (166)
413 2qnr_A Septin-2, protein NEDD5 87.9 0.046 1.6E-06 59.1 -2.6 56 1065-1132 109-167 (301)
414 1u8z_A RAS-related protein RAL 87.9 0.22 7.4E-06 48.1 2.5 19 29-47 8-26 (168)
415 1moz_A ARL1, ADP-ribosylation 87.9 0.14 4.9E-06 50.4 1.2 22 25-46 17-39 (183)
416 1wms_A RAB-9, RAB9, RAS-relate 87.9 0.21 7.3E-06 48.8 2.5 19 29-47 11-29 (177)
417 1c1y_A RAS-related protein RAP 87.9 0.22 7.4E-06 48.1 2.5 19 29-47 7-25 (167)
418 2erx_A GTP-binding protein DI- 87.8 0.22 7.4E-06 48.4 2.5 19 29-47 7-25 (172)
419 3a4m_A L-seryl-tRNA(SEC) kinas 87.8 0.25 8.7E-06 52.1 3.2 23 26-48 5-27 (260)
420 1wf3_A GTP-binding protein; GT 87.8 0.19 6.5E-06 54.2 2.1 24 23-46 5-28 (301)
421 3q85_A GTP-binding protein REM 87.7 0.22 7.7E-06 48.2 2.5 18 29-46 6-23 (169)
422 3b1v_A Ferrous iron uptake tra 87.7 0.21 7.3E-06 52.9 2.5 19 28-46 6-24 (272)
423 1fnn_A CDC6P, cell division co 87.7 0.26 8.8E-06 55.6 3.3 24 27-50 46-69 (389)
424 2wwf_A Thymidilate kinase, put 87.7 0.23 8E-06 50.4 2.7 26 25-50 10-35 (212)
425 2e87_A Hypothetical protein PH 87.7 0.25 8.4E-06 55.0 3.1 24 22-45 164-187 (357)
426 2zr9_A Protein RECA, recombina 87.7 0.26 8.8E-06 54.4 3.2 24 26-49 62-85 (349)
427 3k1j_A LON protease, ATP-depen 87.7 0.25 8.6E-06 59.3 3.3 26 26-51 61-86 (604)
428 2qmh_A HPR kinase/phosphorylas 87.7 0.24 8.2E-06 48.8 2.6 25 23-47 32-56 (205)
429 2nzj_A GTP-binding protein REM 87.6 0.23 7.9E-06 48.4 2.5 19 28-46 7-25 (175)
430 4fcw_A Chaperone protein CLPB; 87.5 0.28 9.7E-06 53.3 3.4 26 26-51 48-73 (311)
431 1upt_A ARL1, ADP-ribosylation 87.5 0.24 8.1E-06 48.1 2.5 23 25-47 6-29 (171)
432 2v54_A DTMP kinase, thymidylat 87.5 0.25 8.6E-06 49.8 2.8 24 26-49 5-28 (204)
433 1r2q_A RAS-related protein RAB 87.5 0.24 8.1E-06 48.0 2.5 19 29-47 10-28 (170)
434 1n0w_A DNA repair protein RAD5 87.5 1.1 3.8E-05 46.3 7.9 50 1083-1132 111-174 (243)
435 3tnu_A Keratin, type I cytoske 87.4 11 0.00036 34.5 13.4 30 729-758 39-68 (131)
436 1tue_A Replication protein E1; 87.4 0.22 7.7E-06 49.3 2.2 26 26-51 59-84 (212)
437 3n70_A Transport activator; si 87.4 0.25 8.6E-06 46.7 2.5 23 27-49 26-48 (145)
438 1f6b_A SAR1; gtpases, N-termin 87.4 0.19 6.5E-06 50.5 1.8 22 25-46 25-46 (198)
439 2lkc_A Translation initiation 87.3 0.24 8.3E-06 48.4 2.5 21 27-47 10-30 (178)
440 2qby_A CDC6 homolog 1, cell di 87.3 0.28 9.6E-06 55.2 3.3 25 25-49 45-69 (386)
441 1nn5_A Similar to deoxythymidy 87.3 0.26 9E-06 50.1 2.8 26 25-50 9-34 (215)
442 2y8e_A RAB-protein 6, GH09086P 87.2 0.24 8.1E-06 48.5 2.3 19 29-47 18-36 (179)
443 3ibp_A Chromosome partition pr 87.2 14 0.00047 38.0 14.9 38 510-550 127-164 (302)
444 1uj2_A Uridine-cytidine kinase 87.2 0.28 9.7E-06 51.4 3.0 27 25-51 22-48 (252)
445 2cxx_A Probable GTP-binding pr 87.1 0.23 7.9E-06 49.2 2.2 18 29-46 5-22 (190)
446 1r8s_A ADP-ribosylation factor 87.1 0.26 8.9E-06 47.4 2.5 20 29-48 4-23 (164)
447 2h92_A Cytidylate kinase; ross 87.1 0.34 1.2E-05 49.5 3.5 27 25-51 3-29 (219)
448 1a7j_A Phosphoribulokinase; tr 87.1 0.25 8.4E-06 53.0 2.5 25 26-50 6-30 (290)
449 2p65_A Hypothetical protein PF 87.0 0.25 8.6E-06 48.8 2.4 26 25-50 43-68 (187)
450 2oil_A CATX-8, RAS-related pro 87.0 0.26 8.8E-06 49.1 2.5 20 29-48 29-48 (193)
451 3tw8_B RAS-related protein RAB 87.0 0.24 8.4E-06 48.5 2.3 18 29-46 13-30 (181)
452 3t5d_A Septin-7; GTP-binding p 86.9 0.25 8.4E-06 52.7 2.4 18 29-46 12-29 (274)
453 2fn4_A P23, RAS-related protei 86.9 0.25 8.6E-06 48.4 2.3 20 29-48 13-32 (181)
454 2f6r_A COA synthase, bifunctio 86.8 0.27 9.2E-06 52.5 2.7 26 25-51 75-100 (281)
455 3t15_A Ribulose bisphosphate c 86.8 0.34 1.2E-05 52.1 3.5 28 25-52 36-63 (293)
456 3q72_A GTP-binding protein RAD 86.8 0.25 8.4E-06 47.7 2.2 18 29-46 6-23 (166)
457 4dsu_A GTPase KRAS, isoform 2B 86.8 0.27 9.2E-06 48.7 2.5 19 29-47 8-26 (189)
458 2z4s_A Chromosomal replication 86.8 0.32 1.1E-05 55.7 3.4 25 25-49 130-154 (440)
459 1v5w_A DMC1, meiotic recombina 86.7 0.34 1.2E-05 53.4 3.4 26 23-48 119-145 (343)
460 2dby_A GTP-binding protein; GD 86.5 0.27 9.1E-06 54.5 2.4 21 28-48 4-24 (368)
461 1nrj_B SR-beta, signal recogni 86.4 0.28 9.7E-06 50.0 2.5 22 28-49 15-36 (218)
462 3bc1_A RAS-related protein RAB 86.4 0.29 9.9E-06 48.7 2.5 19 29-47 15-33 (195)
463 2wsm_A Hydrogenase expression/ 86.4 0.32 1.1E-05 49.8 2.8 25 26-50 31-55 (221)
464 2hxs_A RAB-26, RAS-related pro 86.3 0.29 1E-05 47.8 2.5 19 29-47 10-28 (178)
465 1z0f_A RAB14, member RAS oncog 86.3 0.3 1E-05 47.8 2.5 20 29-48 19-38 (179)
466 3a8t_A Adenylate isopentenyltr 86.2 0.24 8.1E-06 53.6 1.8 25 26-50 41-65 (339)
467 1m7b_A RND3/RHOE small GTP-bin 86.1 0.29 1E-05 48.3 2.3 19 29-47 11-29 (184)
468 2bme_A RAB4A, RAS-related prot 86.1 0.29 1E-05 48.3 2.3 19 29-47 14-32 (186)
469 3ihw_A Centg3; RAS, centaurin, 86.1 0.31 1.1E-05 48.2 2.5 20 29-48 24-43 (184)
470 3con_A GTPase NRAS; structural 86.1 0.31 1.1E-05 48.4 2.5 20 29-48 25-44 (190)
471 2kjq_A DNAA-related protein; s 86.1 0.56 1.9E-05 44.4 4.2 41 1090-1131 82-124 (149)
472 3lxw_A GTPase IMAP family memb 86.1 0.3 1E-05 51.0 2.5 19 29-47 25-43 (247)
473 2jeo_A Uridine-cytidine kinase 86.0 0.13 4.3E-06 53.9 -0.5 54 1064-1131 111-164 (245)
474 3kkq_A RAS-related protein M-R 86.0 0.31 1.1E-05 47.9 2.5 19 29-47 22-40 (183)
475 3ghg_A Fibrinogen alpha chain; 85.9 15 0.0005 40.8 15.3 113 355-477 55-188 (562)
476 3e1s_A Exodeoxyribonuclease V, 85.9 0.37 1.3E-05 57.1 3.4 26 24-49 203-228 (574)
477 2g6b_A RAS-related protein RAB 85.9 0.32 1.1E-05 47.7 2.5 20 29-48 14-33 (180)
478 2efe_B Small GTP-binding prote 85.9 0.32 1.1E-05 47.7 2.5 19 29-47 16-34 (181)
479 3h4m_A Proteasome-activating n 85.9 0.4 1.4E-05 51.4 3.4 27 25-51 51-77 (285)
480 2a9k_A RAS-related protein RAL 85.9 0.32 1.1E-05 47.9 2.5 19 29-47 22-40 (187)
481 2bov_A RAla, RAS-related prote 85.8 0.32 1.1E-05 49.0 2.5 19 29-47 18-36 (206)
482 3clv_A RAB5 protein, putative; 85.8 0.32 1.1E-05 48.9 2.5 21 28-48 10-30 (208)
483 3be4_A Adenylate kinase; malar 85.8 0.35 1.2E-05 49.3 2.8 25 27-51 7-31 (217)
484 4gkw_A Spindle assembly abnorm 85.6 18 0.0006 31.6 22.4 14 834-847 116-129 (167)
485 2gf9_A RAS-related protein RAB 85.6 0.34 1.2E-05 48.1 2.5 19 29-47 26-44 (189)
486 3bh0_A DNAB-like replicative h 85.5 0.24 8.2E-06 53.9 1.4 39 9-49 53-92 (315)
487 2qz4_A Paraplegin; AAA+, SPG7, 85.5 0.46 1.6E-05 50.0 3.7 29 24-52 38-66 (262)
488 2fg5_A RAB-22B, RAS-related pr 85.5 0.32 1.1E-05 48.4 2.3 18 29-46 27-44 (192)
489 1ltq_A Polynucleotide kinase; 85.4 0.32 1.1E-05 52.6 2.4 22 25-46 2-23 (301)
490 3io5_A Recombination and repai 85.4 0.41 1.4E-05 51.0 3.1 30 20-49 23-52 (333)
491 1mh1_A RAC1; GTP-binding, GTPa 85.3 0.35 1.2E-05 47.6 2.5 18 29-46 9-26 (186)
492 3t5g_A GTP-binding protein RHE 85.3 0.34 1.2E-05 47.6 2.3 18 29-46 10-27 (181)
493 3umf_A Adenylate kinase; rossm 85.3 0.41 1.4E-05 48.5 3.0 26 25-50 29-54 (217)
494 1vg8_A RAS-related protein RAB 85.3 0.35 1.2E-05 48.7 2.5 18 29-46 12-29 (207)
495 2ce7_A Cell division protein F 85.2 0.42 1.4E-05 54.9 3.3 26 25-50 49-74 (476)
496 3hnw_A Uncharacterized protein 85.1 16 0.00054 33.5 13.1 81 224-305 55-135 (138)
497 1yrb_A ATP(GTP)binding protein 85.1 0.55 1.9E-05 49.5 4.0 36 13-50 4-39 (262)
498 2ew1_A RAS-related protein RAB 85.0 0.35 1.2E-05 48.6 2.3 18 29-46 30-47 (201)
499 2jee_A YIIU; FTSZ, septum, coi 85.0 14 0.00048 29.9 11.7 71 811-881 8-78 (81)
500 3hnw_A Uncharacterized protein 85.0 8.6 0.00029 35.3 11.3 71 312-382 65-135 (138)
No 1
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.96 E-value=9.7e-29 Score=244.39 Aligned_cols=152 Identities=34% Similarity=0.566 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHhHHhhhcCCccccccCCCCC-cccccchhhhhccccccccccccChHHHHHHHHHHHHHH
Q 001073 1008 DEKKKETLKVTWVKVNKDFGSIFSTLLPGTMAKLEPPEGG-NFLDGLEVCVAFGGVWKQSLSELSGGQRSLLALSLILAL 1086 (1163)
Q Consensus 1008 ~~~~~~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lSgGek~~~~ia~~lal 1086 (1163)
+++..+.|..+|..|+..|+.+|..|+|||.+.+.+.++. ++..|+.+.+.|+++....+..||||||++++||++||+
T Consensus 2 ~~~~~~~f~~~f~~i~~~f~~~f~~L~~~g~~~l~l~~~~~~~~~gl~i~~~~~~~~~~~~~~LSgGekqr~ala~~la~ 81 (173)
T 3kta_B 2 EKEKKNVFMRTFEAISRNFSEIFAKLSPGGSARLILENPEDPFSGGLEIEAKPAGKDVKRIEAMSGGEKALTALAFVFAI 81 (173)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCSSSGGGSCEEEEEETTSSSCCCGGGCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeeCCCCccccCceEEecCCCccccccccCCHHHHHHHHHHHHHHh
Confidence 3456788999999999999999999999999888655433 456799999999998888999999999999999999999
Q ss_pred hccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeeeeCCceEEEEeecc
Q 001073 1087 LLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVAT 1159 (1163)
Q Consensus 1087 ~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~~~g~S~v~~~~~~ 1159 (1163)
+.+.||||+||||||+|||+.++..+.++|.+...++|+|+|||+..++..||++|||+|.+|+|+|+.+...
T Consensus 82 ~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~~~g~s~~~~~~~~ 154 (173)
T 3kta_B 82 QKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSMRDGVSKVVSLSLE 154 (173)
T ss_dssp HHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEETTEEEEEECCHH
T ss_pred cccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEecCCEEEEEEEEcH
Confidence 9889999999999999999999999999999888889999999999999999999999999999999988754
No 2
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=99.94 E-value=1.3e-26 Score=237.18 Aligned_cols=176 Identities=36% Similarity=0.621 Sum_probs=139.6
Q ss_pred CceeEEEecCccccCC-CccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccC--CcceE
Q 001073 1 MYIKEICLEGFKSYAS-RTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQA--GITKA 77 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~-~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~--~~~~a 77 (1163)
|+|++|.|.||++|.+ ...+ +|+||+|+|+||||||||||++||+|+||+.++...|+..+.++|+.+... ....+
T Consensus 2 M~i~~l~i~nf~~~~~~~~~~-~~~~g~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 80 (182)
T 3kta_A 2 PYIEKLELKGFKSYGNKKVVI-PFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYA 80 (182)
T ss_dssp CEEEEEEEESBGGGCSSCEEE-ECCSSEEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCE
T ss_pred ceEEEEEEeCeEeecCccEEE-ecCCCcEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceE
Confidence 8999999999999952 2333 799999999999999999999999999998877788888888888643211 13578
Q ss_pred EEEEEEecCCCCCCCCCCCCCCeEEEEEEEEeCCceeEEECCeecCHHHHHHHHHHcCCCCCCCceeeeCchhhHHhcCC
Q 001073 78 TVSIVFDNSDRSRSPLGYEDHPEITVTRQIVVGGRNKYLINGKLAQPSQVQTLFHSVQLNVNNPHFLIMQGRITKVLNMK 157 (1163)
Q Consensus 78 ~v~~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~~~~~~~in~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qg~v~~~~~~~ 157 (1163)
.|+++|++++....| ....++|.|.+...|.+.|++||++++..++.+++..+++.++++. +++||++..|+.++
T Consensus 81 ~v~~~f~~~~~~~~~----~~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~~~-~~~qg~~~~l~~~~ 155 (182)
T 3kta_A 81 EVAIYFNNEDRGFPI----DEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDGYN-IVLQGDITKFIKMS 155 (182)
T ss_dssp EEEEEEECTTCCSSS----SSSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTCTT-EECTTCTTHHHHSC
T ss_pred EEEEEEeCCCccccc----CCcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCCCE-EEEcccHHHHHhCC
Confidence 999999986543111 1257899999987778899999999999999999999999998775 78999999999999
Q ss_pred chHHHHHHHHHhchhhhHHHHHHHH
Q 001073 158 PPEILSMLEEAAGTRMYETKKEAAL 182 (1163)
Q Consensus 158 p~~~~~~~e~~~g~~~~~~~~~~~~ 182 (1163)
|.+++.+|++++|+..|+..++++.
T Consensus 156 ~~~r~~~ld~~~g~~~~~~~~~~~~ 180 (182)
T 3kta_A 156 PLERRLLIDDISGIAEYDSKKEKAL 180 (182)
T ss_dssp HHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHHHChHHHHHHHHHHh
Confidence 9999999999999999988776554
No 3
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=99.92 E-value=1.3e-24 Score=224.22 Aligned_cols=176 Identities=20% Similarity=0.343 Sum_probs=136.9
Q ss_pred CceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEE
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVS 80 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~ 80 (1163)
|+|++|.|.||+||.+.+ + +|+||+|+|+||||||||||++||+|+||+. ...|+....++|+. +...+.|+
T Consensus 1 M~i~~l~i~nf~~~~~~~-i-~f~~~~~~I~G~NgsGKStil~ai~~~l~g~--~~~r~~~~~~~i~~----~~~~~~v~ 72 (203)
T 3qks_A 1 MKLERVTVKNFRSHSDTV-V-EFKEGINLIIGQNGSGKSSLLDAILVGLYWP--LRIKDIKKDEFTKV----GARDTYID 72 (203)
T ss_dssp CEEEEEEEESBTTBSSEE-E-ECCSEEEEEECCTTSSHHHHHHHHHHHHHTT--SCCTTCCHHHHHTS----CSSCEEEE
T ss_pred CEEEEEEEECCcCccceE-E-EeCCCeEEEEcCCCCCHHHHHHHHHHHhcCC--cccccccchhhhcc----CCCcEEEE
Confidence 999999999999999754 4 7999999999999999999999999999974 33577677899963 35679999
Q ss_pred EEEecCCCCCCCCCCCCCCeEEEEEEEEeCC---ce---eEEECCee--c---CHHHHHHHHHHcCCCCCC--CceeeeC
Q 001073 81 IVFDNSDRSRSPLGYEDHPEITVTRQIVVGG---RN---KYLINGKL--A---QPSQVQTLFHSVQLNVNN--PHFLIMQ 147 (1163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~~---~~---~~~in~~~--~---~~~~~~~~~~~~~~~~~~--~~~~~~Q 147 (1163)
++|.+.+ ..++|.|.+.++| .+ .|..||.. + ..+++.+.+..+ ++.+. .+++++|
T Consensus 73 l~f~~~~-----------~~~~i~R~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~i~~l-l~~~~f~~~~~l~Q 140 (203)
T 3qks_A 73 LIFEKDG-----------TKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKL-IPYNIFLNAIYIRQ 140 (203)
T ss_dssp EEEEETT-----------EEEEEEEEEECSSSCEEEEEEEEEETTEEEESSCSSHHHHHHHHHHH-SCHHHHHHTTEECT
T ss_pred EEEEECC-----------EEEEEEEEEEcCCCCCccceEEEEcCCceeeeccCChHHHHHHHHHH-cCHHHhhEEEEEcC
Confidence 9998742 4678999998765 33 37778832 2 356888877765 44432 3468999
Q ss_pred chhhHHhcCCchHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhHHHHHH
Q 001073 148 GRITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINN 197 (1163)
Q Consensus 148 g~v~~~~~~~p~~~~~~~e~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~ 197 (1163)
|++..|+.++ .+|+.+|++++|+..|....+.+...+...+..+.++++
T Consensus 141 g~~~~~l~~~-~er~~~l~~i~g~~~~~~~~~~l~~~~~~~~~~~~~l~~ 189 (203)
T 3qks_A 141 GQIDAILESD-EAREKVVREVLNLDKFETAYKKLSELKKTINNRIKEYRD 189 (203)
T ss_dssp THHHHHHHCH-HHHHHHHHHHTCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHhCc-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987 999999999999999987766665555555544444443
No 4
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.90 E-value=4.8e-24 Score=248.42 Aligned_cols=173 Identities=29% Similarity=0.517 Sum_probs=118.2
Q ss_pred CceeEEEecCccccCCCccccCCC-CCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCC------
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFD-PYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAG------ 73 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~-~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~------ 73 (1163)
|+|++|.+.||++|.+.+.+ .|+ +++|+|+||||||||||++||+|++++.+ ..+|+..++++|+.+....
T Consensus 2 m~i~~l~~~~~~~~~~~~~~-~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~-~~~R~~~~~~lI~~g~~~~~~~~~~ 79 (430)
T 1w1w_A 2 GRLVGLELSNFKSYRGVTKV-GFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS-NHLRSNILKDLIYRGVLNDENSDDY 79 (430)
T ss_dssp CCEEEEEEESCSSCCSEEEE-ECTTCSEEEEECSTTSSHHHHHHHHHHHTTC----------CGGGSCCC----------
T ss_pred CeeEEEEEeCEEEECCceeE-EecCCCEEEEECCCCCCHHHHHHHHHhhhcccc-ccchhhhHHHHHhcCCccceeeEEe
Confidence 89999999999999875544 465 68999999999999999999999998765 4579999999997532100
Q ss_pred ---------cceEEEEEEEecCCCCCCCCCCCCCCeEEEEEEEEeCCceeEEECCeecCHHHHHHHHHHcCCCCCCCcee
Q 001073 74 ---------ITKATVSIVFDNSDRSRSPLGYEDHPEITVTRQIVVGGRNKYLINGKLAQPSQVQTLFHSVQLNVNNPHFL 144 (1163)
Q Consensus 74 ---------~~~a~v~~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~~~~~~~in~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (1163)
...+.|+..|... ...++|.|.+.++|.+.|+|||++++..++..++...+|.+++++++
T Consensus 80 ~~~~~~~~~~~~~~v~~~~~~~-----------~~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~~i~~~~~~~~ 148 (430)
T 1w1w_A 80 DNEGAASSNPQSAYVKAFYQKG-----------NKLVELMRIISRNGDTSYKIDGKTVSYKDYSIFLENENILIKAKNFL 148 (430)
T ss_dssp ---------CCEEEEEEEEEET-----------TEEEEEEEEEETTSCEEEEETTEEECHHHHHHHHHHTTCCTTTCTTE
T ss_pred cccccccCCcccccceeeeccC-----------CcEEEEEEEEecCCceEEEECCEEccHHHHHHHHHhCCcCCCCccee
Confidence 0234444444321 23578889888778889999999999999999999889988888899
Q ss_pred eeCchhhHHhcCCchHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 001073 145 IMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLE 186 (1163)
Q Consensus 145 ~~Qg~v~~~~~~~p~~~~~~~e~~~g~~~~~~~~~~~~~~l~ 186 (1163)
++||++.+|+.++|.+|+.+|++++|+..|...+..+...+.
T Consensus 149 i~qg~~~~l~~~~p~eRr~~ld~~~g~~~~~~~~~~~~~~~~ 190 (430)
T 1w1w_A 149 VFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIE 190 (430)
T ss_dssp ECTTCTTHHHHSCHHHHHHTC---------------------
T ss_pred eehHhHHHHHhCCHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 999999999999999999999999999888877655544433
No 5
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.88 E-value=1e-22 Score=227.17 Aligned_cols=157 Identities=32% Similarity=0.549 Sum_probs=115.0
Q ss_pred CceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhcc--CCcceEE
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQ--AGITKAT 78 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~--~~~~~a~ 78 (1163)
|+|++|+|.||+||.+...+ +|+||+|+|+||||||||||++||+|+||..+....|+....++|+.+.. .+...++
T Consensus 1 M~l~~L~i~nfr~~~~~~~l-~~~~g~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~ 79 (322)
T 1e69_A 1 MRLKKLYLKGFKSFGRPSLI-GFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAY 79 (322)
T ss_dssp CEEEEEEEESBTTBCSCEEE-ECCSSEEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEE
T ss_pred CeEeEEEEeCceeecCCeEE-ecCCCcEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEE
Confidence 99999999999999765555 69999999999999999999999999999877778898888899975431 3446899
Q ss_pred EEEEEecCCCCCCCCCCCCCCeEEEEEEEEeCCceeEEECCeecCHHHHHHHHHHcCCCCCCCceeeeCchhhHHhcCCc
Q 001073 79 VSIVFDNSDRSRSPLGYEDHPEITVTRQIVVGGRNKYLINGKLAQPSQVQTLFHSVQLNVNNPHFLIMQGRITKVLNMKP 158 (1163)
Q Consensus 79 v~~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~~~~~~~in~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qg~v~~~~~~~p 158 (1163)
|+++|++.+ .++.|.|.+...+.+.|++||++++..++..++..+|+..+. +++++||+|.+++.++|
T Consensus 80 v~~~f~~~~-----------~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~-~~lv~qg~i~~~~~~~p 147 (322)
T 1e69_A 80 VELVFEENG-----------EEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDF-YSIVGQGQIDRIVNASP 147 (322)
T ss_dssp EEEEEESSS-----------CEEEEEEEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTC-CSEEEHHHHHHHHTC--
T ss_pred EEEEEEeCC-----------eEEEEEEEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhh-eeeEehhhHHHHHhccH
Confidence 999998642 478899988877778999999999999999999888887754 46889999999999999
Q ss_pred hHHHHHHHHHhc
Q 001073 159 PEILSMLEEAAG 170 (1163)
Q Consensus 159 ~~~~~~~e~~~g 170 (1163)
.+++.+++...+
T Consensus 148 ~~rr~~ld~~~~ 159 (322)
T 1e69_A 148 EELRLESSKHPT 159 (322)
T ss_dssp ------------
T ss_pred HHHHHHHHHhhh
Confidence 999999987543
No 6
>3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus}
Probab=99.87 E-value=4.2e-22 Score=195.37 Aligned_cols=160 Identities=58% Similarity=0.946 Sum_probs=128.2
Q ss_pred cccccCcccccCcCcccccccccccccCCchhHHHHHhhccCcccEEEcCcHHHHHHHHccccCCceEEeecCCCCCCCC
Q 001073 492 QFTYRDPVKNFDRAKVKGVVAKLIKVKDSSTMTALEVTAGGKLFNVIVDTESTGKQLLQNGDLRRRVTIIPLNKIQSHTV 571 (1163)
Q Consensus 492 ~~~~~~~~~~~~~~~~~G~v~~~i~v~~~~~~~aie~~l~~~l~~vvv~~~~~a~~ll~~~~~~~~~~~~~l~~l~~~~v 571 (1163)
.+.|.++.++|...+++|+|+++|+|++++|..||+.++|+++++|||+|.++|+.|+++.+..++.+|+|++.+.+.+.
T Consensus 2 ~~~~~~~~~~~~~~gv~G~v~dLi~v~d~~y~~Ave~alG~~l~~iVVd~~~~A~~~i~~~~~~GR~tflpL~~i~~~~~ 81 (161)
T 3l51_A 2 QFAYKDPEKNWNRNSVKGLVASLINVKDNSTATALEVVAGERLYNVVVDTEVTAKKLLEKGELKRRYTIIPLNKISARCI 81 (161)
T ss_dssp CCCCCCSSTTCCGGGEEEEGGGSCEESCGGGHHHHHHHHGGGGGCEEESCHHHHHHHHHHSCCSSCEEEEETTTCCCCCC
T ss_pred ccccCCCCCCCCcCccEEEHHHheeeCchhHHHHHHHHhccccceEEECCHHHHHHHHHHHhhCCcEEEEECccccccCc
Confidence 34566666788888999999999999866699999999999999999999999999998765458999999998855444
Q ss_pred ChhhHHHHHhhcCCchhHhhhhccCCChHHHHHHHHhcCCeEEecChHHHHHHHhhcCCCcceeecCCccccCCccccCC
Q 001073 572 PPRVQQAAVRLVGKENAELALSLVGYSDELKTAMEYVFGSTFVCKSIDAAKEVAFSREIRTPSVTLEGDIFQPSGLLTGG 651 (1163)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~l~d~i~~~~aie~al~~~l~nivv~~~~~~a~~I~~~k~~~~~~vT~~G~~~~~~g~i~gg 651 (1163)
+............|+.+.+++|+|+|++.+++++.++|++++||++.+.|..+.+....++++||++|++|.|.|+|+||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~a~dlv~~d~~~~~a~~~llg~tlv~~dl~~A~~~~~~~~~~~r~VTldGd~i~~~G~~tGG 161 (161)
T 3l51_A 82 APETLRVAQNLVGPDNVHVALSLVDYKPELQKGMEFVFGTTFVCNNMDNAKKVAFDKRIMTRTVTLGGDVFDPHGTLSGG 161 (161)
T ss_dssp CHHHHHHHHHHHCTTSEEEGGGGEECCGGGHHHHHHHHTTCEEESSHHHHHHHHHCTTTCCCEEETTSCEECCC------
T ss_pred CHHHHhhhhhcCCCcchhHHHHHhcCCHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCCCCeEEeCCCeEEcCCEEEecC
Confidence 33222111111126778899999999999999999999999999999999999886555789999999999999999987
No 7
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.86 E-value=1.5e-21 Score=222.14 Aligned_cols=172 Identities=27% Similarity=0.388 Sum_probs=129.1
Q ss_pred CceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEE
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVS 80 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~ 80 (1163)
|+|.+|.|.||++|.+. .+ +|+||+|+|+||||||||||||||+|+|++. .|+...+++|+. |...+.|+
T Consensus 3 M~l~~L~l~nFr~~~~~-~i-~f~~gl~vi~G~NGaGKT~ileAI~~~l~g~----~r~~~~~~~ir~----g~~~~~V~ 72 (371)
T 3auy_A 3 MILKEIRMNNFKSHVNS-RI-KFEKGIVAIIGENGSGKSSIFEAVFFALFGA----GSNFNYDTIITK----GKKSVYVE 72 (371)
T ss_dssp EEEEEEEEEEETTEEEE-EE-ECCSEEEEEEECTTSSHHHHHHHHHHHHHCC----C-CCCTTTTBCT----TCSEEEEE
T ss_pred cEEeEEEEEccccccce-EE-ecCCCeEEEECCCCCCHHHHHHHHHHHHcCC----CCccchHhhccC----CCCcEEEE
Confidence 88999999999999764 44 7999999999999999999999999987654 355556677753 45679999
Q ss_pred EEEecCCCCCCCCCCCCCCeEEEEEEEEeCCc--eeEEECCeecCH--HHHHHHHHH-cCCCCC--CCceeeeCchhhHH
Q 001073 81 IVFDNSDRSRSPLGYEDHPEITVTRQIVVGGR--NKYLINGKLAQP--SQVQTLFHS-VQLNVN--NPHFLIMQGRITKV 153 (1163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~~~--~~~~in~~~~~~--~~~~~~~~~-~~~~~~--~~~~~~~Qg~v~~~ 153 (1163)
++|...+ ..+.|.|. .+.|. +.+++||++++. +++...+.. +|++.+ .++.+++||++..|
T Consensus 73 ~~f~~~~-----------~~~~i~r~-~~~g~~~~~~~~ng~~~~~~~~~~~~~l~~i~gl~~~~f~~~v~~~qg~~~~~ 140 (371)
T 3auy_A 73 LDFEVNG-----------NNYKIIRE-YDSGRGGAKLYKNGKPYATTISAVNKAVNEILGVDRNMFLNSIYIKQGEIAKF 140 (371)
T ss_dssp EEEEETT-----------EEEEEEEE-EETTEEEEEEEETTEEEECSHHHHHHHHHHHHCSCHHHHHHHHEECTTHHHHH
T ss_pred EEEEECC-----------EEEEEEEE-EcCCCCceEEEECCEeecccHHHHHHHHHHHhCcCHHHhCceeeecCccHHHH
Confidence 9998632 35567776 34444 347899987753 577766655 476643 24568899999999
Q ss_pred hcCCchHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhHHH
Q 001073 154 LNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDE 194 (1163)
Q Consensus 154 ~~~~p~~~~~~~e~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 194 (1163)
+.++|.+|+.+++.++|...|...+......+......+..
T Consensus 141 ~~~~~~~Rr~~ld~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 181 (371)
T 3auy_A 141 LSLKPSEKLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLER 181 (371)
T ss_dssp HHSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999877766655555555444444333
No 8
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=99.85 E-value=4.1e-22 Score=193.77 Aligned_cols=136 Identities=24% Similarity=0.389 Sum_probs=101.0
Q ss_pred CceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEE
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVS 80 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~ 80 (1163)
|+|++|+|.||+||.+.+ + +|++|+|+|+||||||||||++||+|+|++.. ..|.....++++. +...+.|+
T Consensus 1 M~i~~l~i~nf~~~~~~~-i-~f~~g~~~I~G~NGsGKStil~Ai~~~l~g~~--~~r~~~~~~~~~~----~~~~~~v~ 72 (149)
T 1f2t_A 1 MKLERVTVKNFRSHSDTV-V-EFKEGINLIIGQNGSGKSSLLDAILVGLYWPL--RIKDIKKDEFTKV----GARDTYID 72 (149)
T ss_dssp CEEEEEEEESBTTBSSEE-E-ECCSEEEEEECCTTSSHHHHHHHHHHHHHCSS--CCTTSSCCCSCST----TCCCEEEE
T ss_pred CEEEEEEEeCcccCcceE-E-EcCCCeEEEECCCCCCHHHHHHHHHHHHcCCc--ccccCCHHHheec----CCCcEEEE
Confidence 999999999999998854 4 69999999999999999999999999996542 1255555667653 34578999
Q ss_pred EEEecCCCCCCCCCCCCCCeEEEEEEEEeCC-ceeEE--EC--C---eec--CH-HHHHHHHHHcCCCCCCC--ceeeeC
Q 001073 81 IVFDNSDRSRSPLGYEDHPEITVTRQIVVGG-RNKYL--IN--G---KLA--QP-SQVQTLFHSVQLNVNNP--HFLIMQ 147 (1163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~~-~~~~~--in--~---~~~--~~-~~~~~~~~~~~~~~~~~--~~~~~Q 147 (1163)
++|.+.+ ..+.|.|.+.+.+ .+.|+ +| | +.+ .. +++.+.+..+ ++.+.. ..+|+|
T Consensus 73 ~~f~~~~-----------~~~~i~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~l-l~~~~f~~~~~i~Q 140 (149)
T 1f2t_A 73 LIFEKDG-----------TKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKL-IPYNIFLNAIYIRQ 140 (149)
T ss_dssp EEEEETT-----------EEEEEEEEECCC----EEEEEEEEETTEEEESSCSSHHHHHHHHHHH-SCHHHHHHHTEECT
T ss_pred EEEEECC-----------EEEEEEEEEcCCCCceEEEEEeccCCCceEEcccCchHHHHHHHHHH-cCHHHhhheEEEcC
Confidence 9997532 4678999987633 45566 57 7 333 35 8999998884 433221 147899
Q ss_pred chhhHHhcC
Q 001073 148 GRITKVLNM 156 (1163)
Q Consensus 148 g~v~~~~~~ 156 (1163)
|++.+|+.|
T Consensus 141 G~~~~~l~~ 149 (149)
T 1f2t_A 141 GQIDAILES 149 (149)
T ss_dssp THHHHHTCC
T ss_pred cCHHHHhhC
Confidence 999999875
No 9
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.85 E-value=1.2e-21 Score=228.04 Aligned_cols=190 Identities=27% Similarity=0.439 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHhhhcC---------Cccccc
Q 001073 971 KVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLKVTWVKVNKDFGSIFSTLLP---------GTMAKL 1041 (1163)
Q Consensus 971 ~~~e~~~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~f~~~~~~l~~---------~~~~~l 1041 (1163)
.+.+.|+...++|..+..++.++......+...++.+.....+.|..+|..++..|..+|..+++ +|.+.+
T Consensus 225 ~a~ee~e~l~e~l~~l~~~l~~~r~~~~~l~~~i~~L~~~r~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~g~~~l 304 (430)
T 1w1w_A 225 PRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYRELTKNPNSNVELAGGNASL 304 (430)
T ss_dssp -----------------------------------------------CHHHHHHHHHHHHHHTC-----------CEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccCCCceEEE
Confidence 45566777777777778888888888888888888888888888999999999999999998874 455555
Q ss_pred cCCCC-CcccccchhhhhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC
Q 001073 1042 EPPEG-GNFLDGLEVCVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF 1120 (1163)
Q Consensus 1042 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~ 1120 (1163)
.+.+. ..+..|+.+.+.+|+....++..||||||++++||++||++.+.||||++|||||++||+.++..+..+|....
T Consensus 305 ~~~d~~~~~~~g~~~~~~~~~~~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~ 384 (430)
T 1w1w_A 305 TIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHR 384 (430)
T ss_dssp C------------CEEEECTTCCCCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHC
T ss_pred EecCCCCcccCceEEEEECCCccccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHh
Confidence 44332 23556888888888877778999999999999999999998888999999999999999999999999998875
Q ss_pred -CCCeEEEEEeCcchhhhccceeeeeee--CCceEEEEeeccc
Q 001073 1121 -PHSQFIVVSLKEGMFNNANVLFRTKFV--DGVSTVQRTVATK 1160 (1163)
Q Consensus 1121 -~~~q~i~it~~~~~~~~a~~~~gv~~~--~g~S~v~~~~~~~ 1160 (1163)
.+.|+|+|||++.++..||++|||+|. +|+|+|+.+...+
T Consensus 385 ~~~~~~ii~th~~~~~~~~d~~~~~~~~~~~~~s~~~~~~~~~ 427 (430)
T 1w1w_A 385 NPDLQFIVISLKNTMFEKSDALVGVYRQQQENSSKIITLDLSN 427 (430)
T ss_dssp BTTBEEEEECSCHHHHTTCSEEEEEEEETTTTEEEEEEEEGGG
T ss_pred cCCCEEEEEECCHHHHHhCCEEEEEEEeCCCCeeEEEEEeccc
Confidence 378999999999999999999999996 4999999987653
No 10
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.82 E-value=4.1e-19 Score=211.29 Aligned_cols=139 Identities=18% Similarity=0.282 Sum_probs=110.2
Q ss_pred CceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEE
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVS 80 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~ 80 (1163)
|+|.+|.|.||++|.+.++ +|+||+|+|+|||||||||||+||+|+||+++. .++|+ .|...|+|+
T Consensus 38 M~l~~L~i~nf~~~~~~~l--~f~~g~n~i~G~NGaGKS~lleAl~~llg~r~~--------~~~i~----~g~~~a~v~ 103 (517)
T 4ad8_A 38 PRLSRLEIRNLATITQLEL--ELGGGFCAFTGETGAGKSIIVDALGLLLGGRAN--------HDLIR----SGEKELLVT 103 (517)
T ss_dssp CCCCEEEEESBTTBSCEEE--ECCCSEEEEEESHHHHHHHHTHHHHHHTCSCCC--------GGGBC----TTCSEEEEE
T ss_pred ceeeeeecccccceeeEEE--ecCCCeEEEEcCCCCCHHHHHHHHHHHhcCCcH--------HHHhc----CCCCcEEEE
Confidence 8999999999999987654 799999999999999999999999999997542 45664 356789999
Q ss_pred EEE-ecCCCCCCCCCCCCCCeEEEEEEEEeCCceeEEECCeecCHHHHHHHHHHcCCCCCCCceeeeCchhhHHhcCCch
Q 001073 81 IVF-DNSDRSRSPLGYEDHPEITVTRQIVVGGRNKYLINGKLAQPSQVQTLFHSVQLNVNNPHFLIMQGRITKVLNMKPP 159 (1163)
Q Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~i~r~i~~~~~~~~~in~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qg~v~~~~~~~p~ 159 (1163)
++| ...+ .+.++|+|.+...|++.|+|||++++..++.+++.. ...+++|+. .+...+|.
T Consensus 104 ~~f~~~~~----------~~~~~i~r~~~~~g~~~~~ing~~v~~~~l~~~~~~-------li~i~~q~~--~~~l~~~~ 164 (517)
T 4ad8_A 104 GFWGDGDE----------SEADSASRRLSSAGRGAARLSGEVVSVRELQEWAQG-------RLTIHWQHS--AVSLLSPA 164 (517)
T ss_dssp EEC------------------CEEEEEEETTSCCEEESSSSBCCHHHHHHHHTT-------TEEEESGGG--GGTTTSHH
T ss_pred EEEEecCC----------CCeEEEEEEEecCCCcEEEECCEECCHHHHHHHhhh-------heEEeCCch--HHhcCCHH
Confidence 999 7532 145789999988889999999999999988888732 234556655 45556899
Q ss_pred HHHHHHHHHhchh
Q 001073 160 EILSMLEEAAGTR 172 (1163)
Q Consensus 160 ~~~~~~e~~~g~~ 172 (1163)
.++.+++..+|..
T Consensus 165 ~rr~~LD~~~~~~ 177 (517)
T 4ad8_A 165 NQRGLLDRRVTKE 177 (517)
T ss_dssp HHHHHHHTSSHHH
T ss_pred HHHHHHHHHhCcc
Confidence 9999999988753
No 11
>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0
Probab=99.80 E-value=5.3e-20 Score=180.98 Aligned_cols=141 Identities=24% Similarity=0.340 Sum_probs=117.7
Q ss_pred CcccccccccccccCCchhHHHHHhhccCcccEEEcCcHHHHHHHHccccC--CceEEeecCCCCCCCCChhhHHHHHhh
Q 001073 505 AKVKGVVAKLIKVKDSSTMTALEVTAGGKLFNVIVDTESTGKQLLQNGDLR--RRVTIIPLNKIQSHTVPPRVQQAAVRL 582 (1163)
Q Consensus 505 ~~~~G~v~~~i~v~~~~~~~aie~~l~~~l~~vvv~~~~~a~~ll~~~~~~--~~~~~~~l~~l~~~~v~~~~~~~~~~~ 582 (1163)
.+++|+|+++|+|++. |..||+.++| ++++|||+|.++|+.|+++++.. |+.+|+|++.+.+...+.+. .
T Consensus 17 ~Gv~G~v~dLi~v~~~-y~~Aie~alg-~l~~iVVd~~~~A~~~i~~Lk~~~~GRatflpL~~i~~~~~~~~~------~ 88 (166)
T 3l51_B 17 PGIYGRLGDLGAIDEK-YDIAISSCCH-ALDYIVVDSIDTAQECVNFLKKHNIGIATFIGLDKMTVWAKKMSK------I 88 (166)
T ss_dssp TTEEEEGGGSCBCCGG-GHHHHHHHCG-GGGSEEESCHHHHHHHHHHHHHTTCCCCCEEEGGGTGGGTTSCCC------C
T ss_pred CCceEEHHHheeeCHH-HHHHHHHHHh-hCceEEECCHHHHHHHHHHHHHcCCCeEEEEECcccccccccccc------c
Confidence 3699999999999755 9999999997 99999999999999999876543 79999999887432211100 0
Q ss_pred cCCchhHhhhhccCCC-hHHHHHHHHhcCCeEEecChHHHHHHHhhcCCCcceeecCCccccCCccccCCCC
Q 001073 583 VGKENAELALSLVGYS-DELKTAMEYVFGSTFVCKSIDAAKEVAFSREIRTPSVTLEGDIFQPSGLLTGGSR 653 (1163)
Q Consensus 583 ~~~~~~~~l~d~i~~~-~aie~al~~~l~nivv~~~~~~a~~I~~~k~~~~~~vT~~G~~~~~~g~i~gg~~ 653 (1163)
..|+.+++++|+|+|+ +.+++++.++|++++||++.+.|..+.+....++++||++|++|.|.|+|+||+.
T Consensus 89 ~~~~~~~~a~dlv~~~d~~~~~a~~~llg~tlVv~dl~~A~~~~~~~~~~~r~VTldGdli~~~G~~tGG~~ 160 (166)
T 3l51_B 89 QTPENTPRLFDLVKVKNEEIRQAFYFALRDTLVANNLDQATRVAYQRDRRWRVVTLQGQIIEQSGTMSGGLE 160 (166)
T ss_dssp CCGGGCCBHHHHCBCSCHHHHHHHHHHHTTCEEESSHHHHHHHHBCSSCBCCEEETTSCEECTTCCEEECCG
T ss_pred ccccchhhHhheeeCCcHHHHHHHHHHcCCEEEECCHHHHHHHHHhhCCCcEEEECCCEEEeCCEEEECCCc
Confidence 0145566799999994 6899999999999999999999999987655678999999999999999999974
No 12
>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus}
Probab=99.78 E-value=2.3e-19 Score=178.73 Aligned_cols=134 Identities=31% Similarity=0.541 Sum_probs=115.9
Q ss_pred CcccccccccccccCCchhHHHHHhhccCcccEEEcCcHHHHHHHHccccC--CceEEeecCCCCCCCCChhhHHHHHhh
Q 001073 505 AKVKGVVAKLIKVKDSSTMTALEVTAGGKLFNVIVDTESTGKQLLQNGDLR--RRVTIIPLNKIQSHTVPPRVQQAAVRL 582 (1163)
Q Consensus 505 ~~~~G~v~~~i~v~~~~~~~aie~~l~~~l~~vvv~~~~~a~~ll~~~~~~--~~~~~~~l~~l~~~~v~~~~~~~~~~~ 582 (1163)
.+++|||+++|+|++.+|..||+.++|+++++|||+|.++|..|+++++.. ++.+|+|++.+.+.+.+.
T Consensus 34 ~gv~G~l~dLi~V~~~kye~Ave~aLG~~l~~iVVd~~~~A~~~i~~Lk~~~~GRatflpl~~i~~~~~~~--------- 104 (189)
T 3nwc_A 34 GGIYGTLAELIKVKDEAYALAIEVALGNRADNVVVEDELVAEKAIKYLKEHKLGRLTFLPLNKIKPKHVDS--------- 104 (189)
T ss_dssp CSEEEEHHHHCEESCGGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHTTCCCCCEEETTTCCCCCCCS---------
T ss_pred CCceEEHHHheeeChhhHHHHHHHHhccccccEEECCHHHHHHHHHHHHhcCCCceEEEECCccccccCCC---------
Confidence 479999999999988889999999999999999999999999999875532 799999999874432221
Q ss_pred cCCchhHhhhhccCCChHHHHHHHHhcCCeEEecChHHHHHHHhhcCCCcceeecCCccccCCccccCCCCC
Q 001073 583 VGKENAELALSLVGYSDELKTAMEYVFGSTFVCKSIDAAKEVAFSREIRTPSVTLEGDIFQPSGLLTGGSRR 654 (1163)
Q Consensus 583 ~~~~~~~~l~d~i~~~~aie~al~~~l~nivv~~~~~~a~~I~~~k~~~~~~vT~~G~~~~~~g~i~gg~~~ 654 (1163)
+||+. ++|+|+|++.+.+++.++|++++||++.+.|..+ + + ++++||+||++|.|.|+|+||+..
T Consensus 105 -~~g~~--a~dlv~~d~~~~~a~~~llg~tlvv~dl~~A~~l-~-~--~~r~VTldGd~i~~~G~~tGG~~~ 169 (189)
T 3nwc_A 105 -SVGLP--AVDVIEYDQKIENAVKFALGDTVIVNSMEEARPH-I-G--KVRMVTIEGELYERSGAITGGHFR 169 (189)
T ss_dssp -CSSEE--GGGGEECCGGGHHHHHHHHTTEEEESCSGGGGGG-T-T--TSEEEETTSCEECTTSCEECSCSS
T ss_pred -CCCcE--EeeeeccCHHHHHHHHHHhCCEEEECCHHHHHHH-h-C--CCeEEeCCCcEEECCEEEEeCCCC
Confidence 14655 8999999999999999999999999999999877 3 2 689999999999999999998754
No 13
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.76 E-value=4.3e-19 Score=199.16 Aligned_cols=156 Identities=22% Similarity=0.389 Sum_probs=112.3
Q ss_pred CceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEE
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVS 80 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~ 80 (1163)
|+|++|+|.||+||.+.+ + +|+||+|+|+||||||||||+|||+|+|++.. ..|+....++++ .+...+.|+
T Consensus 1 M~i~~l~l~nF~~~~~~~-i-~f~~~~~~i~G~NGsGKS~lleAi~~~l~~~~--~~~~~~~~~~~~----~~~~~~~v~ 72 (339)
T 3qkt_A 1 MKLERVTVKNFRSHSDTV-V-EFKEGINLIIGQNGSGKSSLLDAILVGLYWPL--RIKDIKKDEFTK----VGARDTYID 72 (339)
T ss_dssp CEEEEEEEEEETTEEEEE-E-ECCSEEEEEECCTTSSHHHHHHHHHHHHHCSC--CCTTCCHHHHBC----TTCSEEEEE
T ss_pred CeEEEEEEEcccCccCeE-E-cCCCCeEEEECCCCCCHHHHHHHHHHHhcCCc--ccCcCCHHHHhc----CCCCeEEEE
Confidence 999999999999998754 4 79999999999999999999999999998743 335555667775 345679999
Q ss_pred EEEecCCCCCCCCCCCCCCeEEEEEEEEeC---CceeEE---ECCee-----cCHHHHHHHHHHc-CCCCCCCceeeeCc
Q 001073 81 IVFDNSDRSRSPLGYEDHPEITVTRQIVVG---GRNKYL---INGKL-----AQPSQVQTLFHSV-QLNVNNPHFLIMQG 148 (1163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~---~~~~~~---in~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~Qg 148 (1163)
++|.+.+ ..+.|.|++.+. |...|. +++.. ....++...+..+ +.++-.+.++++||
T Consensus 73 ~~~~~~~-----------~~~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~l~~~~~f~~~~~i~Qg 141 (339)
T 3qkt_A 73 LIFEKDG-----------TKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQG 141 (339)
T ss_dssp EEEEETT-----------EEEEEEEEEETTCTTSCEEEEEEEETTEEEESSCSSHHHHHHHHHHHSCHHHHHHHTEECTT
T ss_pred EEEEECC-----------EEEEEEEEEecCCCCCcceEEEEecCCceeeccccchHHHHHHHHHhcCHHHhhhheEecch
Confidence 9998642 346788877652 233332 24422 2233444433221 21111234578999
Q ss_pred hhhHHhcCCchHHHHHHHHHhchhhhHH
Q 001073 149 RITKVLNMKPPEILSMLEEAAGTRMYET 176 (1163)
Q Consensus 149 ~v~~~~~~~p~~~~~~~e~~~g~~~~~~ 176 (1163)
+++.|+. +|.+|..++++++|+..|+.
T Consensus 142 ~~~~il~-~~~eR~~ll~~l~~~~~~~~ 168 (339)
T 3qkt_A 142 QIDAILE-SDEAREKVVREVLNLDKFET 168 (339)
T ss_dssp CTTGGGS-CTTHHHHHHHHHHTTCTTHH
T ss_pred hHHHHHh-ChHHHHHHHHHHhCchhHHH
Confidence 9999996 69999999999999988854
No 14
>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1
Probab=99.68 E-value=8.8e-17 Score=168.09 Aligned_cols=159 Identities=25% Similarity=0.386 Sum_probs=122.1
Q ss_pred cccccccccccccCCchhHHHHHhhccCcccEEEcCcHHHHHHHHcccc--CCceEEeecCCCCCCCCCh-hhHHHHHhh
Q 001073 506 KVKGVVAKLIKVKDSSTMTALEVTAGGKLFNVIVDTESTGKQLLQNGDL--RRRVTIIPLNKIQSHTVPP-RVQQAAVRL 582 (1163)
Q Consensus 506 ~~~G~v~~~i~v~~~~~~~aie~~l~~~l~~vvv~~~~~a~~ll~~~~~--~~~~~~~~l~~l~~~~v~~-~~~~~~~~~ 582 (1163)
+++|+|+++|+|++. |..||+.++|+++++|||++..++..++.+++. .++.+|+|++.+.+.. +. +.. ..
T Consensus 43 g~~g~l~~li~v~~~-~e~Ave~aLg~~l~~ivv~~~~~a~~~i~~lk~~~~gr~~~lpl~~~~~~~-~~~~~~----~~ 116 (213)
T 1gxl_A 43 GLVDVVSNLIEVDEK-YSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSF-NRISGL----EN 116 (213)
T ss_dssp TEEEEGGGTCBCCHH-HHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHHTCEEEEEEETTTSCCCC-CCCTTG----GG
T ss_pred CCceehhheeeeCHH-HHHHHHHHHHHhhcEEEECCHHHHHHHHHHHHhcCCCceEEEEchhcCCCC-ccchhh----hc
Confidence 578999999999654 999999999999999999999999988876432 2678999998763321 10 000 00
Q ss_pred cCCchhHhhhhccCCChHHHHHHHHhcCCeEEecChHHHHHHHhhcCCCcceeecCCccccCCccccCCCCCCCCChhHH
Q 001073 583 VGKENAELALSLVGYSDELKTAMEYVFGSTFVCKSIDAAKEVAFSREIRTPSVTLEGDIFQPSGLLTGGSRRGGGDLLRQ 662 (1163)
Q Consensus 583 ~~~~~~~~l~d~i~~~~aie~al~~~l~nivv~~~~~~a~~I~~~k~~~~~~vT~~G~~~~~~g~i~gg~~~~~~~~l~~ 662 (1163)
++|++++++|+|.|++.+.+++.++|++++||++.+.|..+.+....++++||++|++|.|.|+|+||+.....+.+..
T Consensus 117 -~~g~~~~~~d~v~~~~~~~~~~~~~lg~~~vv~~l~~A~~~~~~~~~~~~~VT~~G~~~~~~G~~~gg~~~~~~~~l~~ 195 (213)
T 1gxl_A 117 -ERGFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGREERSSNVFER 195 (213)
T ss_dssp -STTEEEEGGGGCBCCSTTHHHHHHHSSSEEEESSHHHHHHHHHHTCSSCEEECTTSCEECTTSCEEECCCSSCCCTTHH
T ss_pred -CCCcHHHHHHHhcCCHHHHHHHHHHhCCEEEECCHHHHHHHHHhcCCCceEEecCCeEEcCCceEECCCCccccchhhH
Confidence 1577778899999999999999999999999999999998887544568899999999999999998874322234444
Q ss_pred HHHHHHHHH
Q 001073 663 LHRLAAVES 671 (1163)
Q Consensus 663 ~~~~~~l~~ 671 (1163)
...+..+..
T Consensus 196 ~~el~~l~~ 204 (213)
T 1gxl_A 196 RIKLKHLEQ 204 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 433333333
No 15
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.66 E-value=2.7e-16 Score=175.11 Aligned_cols=109 Identities=37% Similarity=0.634 Sum_probs=93.0
Q ss_pred cchhhhhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeC
Q 001073 1052 GLEVCVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLK 1131 (1163)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~ 1131 (1163)
|+.+.+..++....++..||||||++++||++||...+.+||+++|||||++||+..+..+.++|.....+.|+|+|||+
T Consensus 202 g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~ 281 (322)
T 1e69_A 202 GFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHN 281 (322)
T ss_dssp --CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCC
T ss_pred CeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 44444444444556789999999999999999997666788999999999999999999999999888778899999999
Q ss_pred cchhhhccceeeeeeeCCceEEEEeeccc
Q 001073 1132 EGMFNNANVLFRTKFVDGVSTVQRTVATK 1160 (1163)
Q Consensus 1132 ~~~~~~a~~~~gv~~~~g~S~v~~~~~~~ 1160 (1163)
+.++..||++++|+|.+|.|.|..+..-+
T Consensus 282 ~~~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 282 KIVMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp TTGGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred HHHHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 99999999999999999999999886543
No 16
>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=99.65 E-value=4e-16 Score=162.39 Aligned_cols=137 Identities=29% Similarity=0.478 Sum_probs=111.9
Q ss_pred cccccccccccccCCchhHHHHHhhccCcccEEEcCcHHHHHHHHcccc---CCceEEeecCCCCCCCCChhhHHHHHhh
Q 001073 506 KVKGVVAKLIKVKDSSTMTALEVTAGGKLFNVIVDTESTGKQLLQNGDL---RRRVTIIPLNKIQSHTVPPRVQQAAVRL 582 (1163)
Q Consensus 506 ~~~G~v~~~i~v~~~~~~~aie~~l~~~l~~vvv~~~~~a~~ll~~~~~---~~~~~~~~l~~l~~~~v~~~~~~~~~~~ 582 (1163)
+++|||+++|+|++. |..||+.++|+++++|||++..++..++.+++. .++.+|+|++.+.+..++.+.
T Consensus 48 g~~g~l~dli~v~~~-~e~Ave~aLG~~l~~iVV~~~~~a~~~i~~l~~~~~~gr~tflpl~~~~~~~~~~~~------- 119 (213)
T 2wd5_B 48 GYHGIVMNNFECEPA-FYTCVEVTAGNRLFYHIVDSDEVSTKILMEFNKMNLPGEVTFLPLNKLDVRDTAYPE------- 119 (213)
T ss_dssp TEEEEGGGSEECCGG-GHHHHHHHHTTGGGCEEESCHHHHHHHHHHHHHTTCCCCEEEEETTTCCCCCCCCCC-------
T ss_pred CceeeHHHhcccCHH-HHHHHHHHHhHHhhEEEECCHHHHHHHHHHHHhCCCCcceEEEECcccCcccCCCCC-------
Confidence 588999999999655 999999999999999999999999988876432 378999998876332211100
Q ss_pred cCCchhHhhhhccCCChHHHHHHHHhcCCeEEecChHHHHHHHhhcCCCcceeecCCccccCCccccCCCCC
Q 001073 583 VGKENAELALSLVGYSDELKTAMEYVFGSTFVCKSIDAAKEVAFSREIRTPSVTLEGDIFQPSGLLTGGSRR 654 (1163)
Q Consensus 583 ~~~~~~~~l~d~i~~~~aie~al~~~l~nivv~~~~~~a~~I~~~k~~~~~~vT~~G~~~~~~g~i~gg~~~ 654 (1163)
.+|+.+ ++|+|.|++.+.+++.++|++++||++.+.|..+.+.. ++++||++|++|.|.|+|+||+..
T Consensus 120 -~~~~~~-l~~~v~~~~~~~~~~~~~l~~~~vv~~l~~A~~l~~~~--~~~~VTldG~~~~~~G~~tgG~~~ 187 (213)
T 2wd5_B 120 -TNDAIP-MISKLRYNPRFDKAFKHVFGKTLICRSMEVSTQLARAF--TMDCITLEGDQVSHRGALTGGYYD 187 (213)
T ss_dssp -CSSEEE-GGGGCEECGGGHHHHHHHHTTEEEESSHHHHHHHHHHS--SCEEECTTCCEECTTSCEEECCCC
T ss_pred -CCCcee-HHHHccCcHHHHHHHHHHcCCEEEECCHHHHHHHHHhc--CceEEeCCCcEECCCeEEECCCCC
Confidence 034443 77999999999999999999999999999999888642 578999999999999999998743
No 17
>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=99.65 E-value=2.8e-16 Score=165.13 Aligned_cols=140 Identities=28% Similarity=0.506 Sum_probs=114.7
Q ss_pred c-ccccccccccccCCchhHHHHHhhccCcccEEEcCcHHHHHHHHccccC--CceEEeecCCCCCCCCChhhHHHHHhh
Q 001073 506 K-VKGVVAKLIKVKDSSTMTALEVTAGGKLFNVIVDTESTGKQLLQNGDLR--RRVTIIPLNKIQSHTVPPRVQQAAVRL 582 (1163)
Q Consensus 506 ~-~~G~v~~~i~v~~~~~~~aie~~l~~~l~~vvv~~~~~a~~ll~~~~~~--~~~~~~~l~~l~~~~v~~~~~~~~~~~ 582 (1163)
+ ++|||+++|+|+++.|..||+.++|+++++|||++..++..|+.+++.. ++.+|+|++.+.+...+. .+ ..
T Consensus 53 g~v~G~l~dli~v~~~~ye~Ave~aLG~~l~~iVV~~~~~a~~~i~~Lk~~~~Gr~tflpl~~i~~~~~~~-~~----~~ 127 (233)
T 2wd5_A 53 GSVYGRLIDLCQPTQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTDE-KL----RE 127 (233)
T ss_dssp GGEEEEHHHHEEESSGGGHHHHHHHHGGGGSCEEESCHHHHHHHHHHHHHTTCCCEEEEETTTCCCCCCCG-GG----GG
T ss_pred CCeeeeHHHhceeCcHHHHHHHHHHHHHhhcEEEECCHHHHHHHHHHHHhcCCCCeEEEECcccccCCcch-hc----cC
Confidence 5 7899999999976669999999999999999999999999988765432 789999998763322221 00 01
Q ss_pred cCCchhHhhhhccCC-ChHHHHHHHHhcCCeEEecChHHHHHHHhhcCCCcceeecCCccccCCccccCCC
Q 001073 583 VGKENAELALSLVGY-SDELKTAMEYVFGSTFVCKSIDAAKEVAFSREIRTPSVTLEGDIFQPSGLLTGGS 652 (1163)
Q Consensus 583 ~~~~~~~~l~d~i~~-~~aie~al~~~l~nivv~~~~~~a~~I~~~k~~~~~~vT~~G~~~~~~g~i~gg~ 652 (1163)
++| +.+++|+|.| ++.+.+++.++|++++||++.+.|..+.+....++++||++|++|.|.|+|+||+
T Consensus 128 -~~g-~~~l~dlV~~~~~~~~~~~~~~Lg~~~vv~dl~~A~~l~~~~~~~~r~VTldG~~~~~~G~~tGG~ 196 (233)
T 2wd5_A 128 -LKG-AKLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFGGHQRHKTVALDGTLFQKSGVISGGA 196 (233)
T ss_dssp -CSS-CEESGGGEEESSGGGHHHHHHHTTTCEEESSHHHHHHHHHSSSSCCCEEETTCCEECTTSCEEECH
T ss_pred -CCC-chHHHHhhhCCcHHHHHHHHHHhCCEEEECCHHHHHHHHHhcCCCceEEecCCEEEeCCeeEeCCC
Confidence 134 4578899999 6999999999999999999999999998764456789999999999999999885
No 18
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.64 E-value=4.3e-16 Score=173.13 Aligned_cols=138 Identities=18% Similarity=0.230 Sum_probs=106.4
Q ss_pred CceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEE
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVS 80 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~ 80 (1163)
|+|++|.+.||++|.+.++ .|++|+|+|+||||||||||++||++++.+ + .|....+++|+. +...+.|.
T Consensus 4 M~i~~L~l~~~~~~~~~~~--~~~~g~~~i~G~nG~GKttll~ai~~~~~g---~-~R~~~~~~lI~~----g~~~~~V~ 73 (359)
T 2o5v_A 4 VRLSALSTLNYRNLAPGTL--NFPEGVTGIYGENGAGKTNLLEAAYLALTG---Q-TDAPRIEQLIQA----GETEAYVR 73 (359)
T ss_dssp CCEEEEEEESBTTCCSEEE--ECCSEEEEEECCTTSSHHHHHHHHHHHHHS---C-CCCSSGGGGBCT----TCSCEEEE
T ss_pred cEEeEEEEeCccceeeeEE--EEcCCeEEEECCCCCChhHHHHHHHHhccC---C-CCCCCHHHHhcc----CCCcEEEE
Confidence 8999999999999976554 689999999999999999999999988754 4 677888889863 34569999
Q ss_pred EEEecCCCCCCCCCCCCCCeEEEEEEEEeCCceeEEECCeecCHHHHHHHHHHcCCCCCCCceeeeCchhhHHhcCCchH
Q 001073 81 IVFDNSDRSRSPLGYEDHPEITVTRQIVVGGRNKYLINGKLAQPSQVQTLFHSVQLNVNNPHFLIMQGRITKVLNMKPPE 160 (1163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~~~~~~~in~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qg~v~~~~~~~p~~ 160 (1163)
+.|.+.+ ..+.|...+.++| ..++|||++++..++ + |+ ++.++.+++. .++..+|.+
T Consensus 74 ~~~~~~~-----------~~~~i~~~~~~~~-~~~~ing~~~~~~~l---~---gl----~~v~~~p~d~-~li~g~p~~ 130 (359)
T 2o5v_A 74 ADLQQGG-----------SLSIQEVGLGRGR-RQLKVDGVRARTGDL---P---RG----GAVWIRPEDS-ELVFGPPSG 130 (359)
T ss_dssp EEEEETT-----------EEEEEEEEEETTE-EEEEETTEEECGGGC---C---SC----CEEEECTTTT-HHHHSCHHH
T ss_pred EEEecCC-----------ceEEEEEEEECCc-eEEEECCeEcCHHHH---h---Cc----hheEECcccH-hhhcCCHHH
Confidence 9998632 2344555555444 478999999883333 2 31 4566777775 566778999
Q ss_pred HHHHHHHHhch
Q 001073 161 ILSMLEEAAGT 171 (1163)
Q Consensus 161 ~~~~~e~~~g~ 171 (1163)
|+.+++.+++.
T Consensus 131 RR~flD~~l~~ 141 (359)
T 2o5v_A 131 RRAYLDSLLSR 141 (359)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhc
Confidence 99999999873
No 19
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.62 E-value=2.5e-15 Score=144.34 Aligned_cols=93 Identities=30% Similarity=0.404 Sum_probs=80.1
Q ss_pred cccccccChHHHHHHHHHHHHHH--hccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILAL--LLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal--~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~ 1140 (1163)
.+++..||||||++++||+.||+ ....+||+++|||||+|||+..+..+.++|.... .+.++|+|||+..+...||+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ 131 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADH 131 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCE
Confidence 46789999999999999865554 3346789999999999999999999999998764 47899999999988889999
Q ss_pred eeeeeeeCCceEEEEe
Q 001073 1141 LFRTKFVDGVSTVQRT 1156 (1163)
Q Consensus 1141 ~~gv~~~~g~S~v~~~ 1156 (1163)
++-+...+|.|.|...
T Consensus 132 ii~l~~~~g~s~~~~~ 147 (148)
T 1f2t_B 132 VIRISLENGSSKVEVV 147 (148)
T ss_dssp EEEEEEETTEEEEEEC
T ss_pred EEEEEcCCCeEEEEec
Confidence 9988888999988653
No 20
>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 2.0A {Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A
Probab=99.60 E-value=9.4e-16 Score=156.01 Aligned_cols=141 Identities=26% Similarity=0.403 Sum_probs=116.7
Q ss_pred cccccccccccccCCchhHHHHHhhccCcccEEEcCcHHHHHHHHcccc--CCceEEeecCCCCCCCCCh-hhHHHHHhh
Q 001073 506 KVKGVVAKLIKVKDSSTMTALEVTAGGKLFNVIVDTESTGKQLLQNGDL--RRRVTIIPLNKIQSHTVPP-RVQQAAVRL 582 (1163)
Q Consensus 506 ~~~G~v~~~i~v~~~~~~~aie~~l~~~l~~vvv~~~~~a~~ll~~~~~--~~~~~~~~l~~l~~~~v~~-~~~~~~~~~ 582 (1163)
+++|+|+++|+|++. |..||+.++|+++++|||++.++++.++.+++. .++.+|+|++.+.+.. +. +.+ ..
T Consensus 31 g~~g~l~~li~v~~~-~e~Ave~aLG~~l~~ivv~~~~~a~~~i~~lk~~~~gr~tflpl~~~~~~~-~~~~~~---~~- 104 (186)
T 1gxj_A 31 GLVDVVSNLIEVDEK-YSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDGSF-NRISGL---EN- 104 (186)
T ss_dssp TEEEEHHHHCBCCGG-GHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHHTCCCEEEEETTTCCCCC-CCCTTG---GG-
T ss_pred CcceehhheeccCHH-HHHHHHHHHHHhhhEEEECCHHHHHHHHHHHHhcCCCceEEEEccccCCCc-ccchhc---cc-
Confidence 578999999999765 999999999999999999999999999876442 2789999998764321 10 000 00
Q ss_pred cCCchhHhhhhccCCChHHHHHHHHhcCCeEEecChHHHHHHHhhcCCCcceeecCCccccCCccccCCCC
Q 001073 583 VGKENAELALSLVGYSDELKTAMEYVFGSTFVCKSIDAAKEVAFSREIRTPSVTLEGDIFQPSGLLTGGSR 653 (1163)
Q Consensus 583 ~~~~~~~~l~d~i~~~~aie~al~~~l~nivv~~~~~~a~~I~~~k~~~~~~vT~~G~~~~~~g~i~gg~~ 653 (1163)
++|++++++|+|.|++.+.+++.++|++++||++.+.|..+.+....++++||++|++|.|.|+|+||+.
T Consensus 105 -~~g~~~~~~dlv~~~~~~~~~~~~~lg~~~v~~~l~~A~~l~~~~~~~~~~VTldG~~~~~~G~~~gG~~ 174 (186)
T 1gxj_A 105 -ERGFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGRE 174 (186)
T ss_dssp -STTEEEEHHHHCBCCGGGHHHHHHHHTTCEEESCHHHHHHHHHHHTCCSCEEETTSCEECTTSCEEEEEC
T ss_pred -CCCchHHHHHHccCCHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCCCceEEeCCCeEEcCCEEEECCCC
Confidence 1577778899999999999999999999999999999998887645678999999999999999998864
No 21
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.60 E-value=6.8e-15 Score=165.90 Aligned_cols=158 Identities=22% Similarity=0.333 Sum_probs=107.6
Q ss_pred CceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEE
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVS 80 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~ 80 (1163)
|+|.+|++.||++|.+.++ +|++|+++|+|||||||||||+||+|+|.+.+. |.....+++..+ .+...+.|+
T Consensus 1 M~~~~l~~~~f~~~~~~~i--~~~~g~~~i~G~NGaGKTTll~ai~~al~g~~~---r~~~~~~~~~~~--~~~~~~~v~ 73 (365)
T 3qf7_A 1 MRPERLTVRNFLGLKNVDI--EFQSGITVVEGPNGAGKSSLFEAISFALFGNGI---RYPNSYDYVNRN--AVDGTARLV 73 (365)
T ss_dssp CEEEEEEEEEETTEEEEEE--ECCSEEEEEECCTTSSHHHHHHHHHHHHHSCCS---SCSSGGGGBCTT--CTTCEEEEE
T ss_pred CeeEEEEEeCccCccceEE--ecCCCeEEEECCCCCCHHHHHHHHHHHhcCCcc---cccCcchhhhcc--CCCCcEEEE
Confidence 9999999999999998653 789999999999999999999999999976432 222222222211 234567888
Q ss_pred EEEecCCCCCCCCCCCCCCeEEEEEEEEeC-Cc---eeEE--ECCee----cCHHHHHHHHH-HcCCCCCC--CceeeeC
Q 001073 81 IVFDNSDRSRSPLGYEDHPEITVTRQIVVG-GR---NKYL--INGKL----AQPSQVQTLFH-SVQLNVNN--PHFLIMQ 147 (1163)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~i~~~-~~---~~~~--in~~~----~~~~~~~~~~~-~~~~~~~~--~~~~~~Q 147 (1163)
+.|...+ ..+.|.|.+.+. |. +-|. .||.. ....++...+. -+|+..+. .+.++||
T Consensus 74 ~~f~~~g-----------~~y~v~R~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~i~~~lgl~~~~f~~~v~l~Q 142 (365)
T 3qf7_A 74 FQFERGG-----------KRYEIIREINALQRKHNAKLSEILENGKKAAIAAKPTSVKQEVEKILGIEHRTFIRTVFLPQ 142 (365)
T ss_dssp EEEEETT-----------EEEEEEEEEETTTTEEEEEEEEECTTSCEEEEEESHHHHHHHHHHHHTSCHHHHHHHTEECT
T ss_pred EEEEECC-----------EEEEEEEEEeccCCCCccEEEEEcCCCceeecccChHHHHHHHHHHHCCCHHHhceEEEEcc
Confidence 8887532 355677766431 11 1122 24532 12344444433 22665432 3568999
Q ss_pred chhhHHhcCCchHHHHHHHHHhch-hhhHH
Q 001073 148 GRITKVLNMKPPEILSMLEEAAGT-RMYET 176 (1163)
Q Consensus 148 g~v~~~~~~~p~~~~~~~e~~~g~-~~~~~ 176 (1163)
|++..|..++|.++..+++.+.++ ..|..
T Consensus 143 g~~~~~l~~~~~~r~~~l~~lf~~~~~~~~ 172 (365)
T 3qf7_A 143 GEIDKLLISPPSEITEIISDVFQSKETLEK 172 (365)
T ss_dssp TCTTTTTTSCHHHHHHHHHHHTSCHHHHHH
T ss_pred cchHHHHhcChhhHHHHHHHHHhhHHHHHH
Confidence 999999999999999999999986 34443
No 22
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.54 E-value=6.6e-13 Score=157.84 Aligned_cols=156 Identities=15% Similarity=0.153 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhHHhhhc-CCccccccCC--C--CCcccccchhhhhc-cc
Q 001073 988 SKKNIIENDKSKIKKVIEELDEKKKETLKVTWVKVNKDFGSIFSTLL-PGTMAKLEPP--E--GGNFLDGLEVCVAF-GG 1061 (1163)
Q Consensus 988 ~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~f~~~~~~l~-~~~~~~l~~~--~--~~~~~~~~~~~~~~-~~ 1061 (1163)
..+..+..........+...-..+.+........+...+...+..+. +++...+... . .......+.+.+.+ ++
T Consensus 309 ~~l~~l~~~~~~~~~~~~~~~~~L~~~R~~~~~~l~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~ 388 (517)
T 4ad8_A 309 RDAGSLQADVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 388 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCSCEEEEEEEECSSCCSSCSEEEEEEEESSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEEECCcCCCcccceeeeeccCCCC
Confidence 34444555555555555554444444444555666666666666552 2222212111 0 01112233333333 23
Q ss_pred ccccccccc-ChHHHHHHHHHHHHHHhccCCC--CEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhc
Q 001073 1062 VWKQSLSEL-SGGQRSLLALSLILALLLFKPA--PLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNA 1138 (1163)
Q Consensus 1062 ~~~~~~~~l-SgGek~~~~ia~~lal~~~~~~--p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a 1138 (1163)
....++..| ||||+++++||++|+ .+| |++||||||+|||+.....|..+|..+..+.|+|+|||++.++..|
T Consensus 389 ~~~~~~~~l~SgG~~qrv~la~~l~----~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~ 464 (517)
T 4ad8_A 389 EELGPLSDVASGGELSRVMLAVSTV----LGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARA 464 (517)
T ss_dssp SCCCBSSSSSCSSHHHHHHHHHHHH----HCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHS
T ss_pred CCcccHHhcCCHHHHHHHHHHHHHH----hCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhC
Confidence 345678898 999999999999776 355 9999999999999999999999998876689999999999999999
Q ss_pred cceeeeeee
Q 001073 1139 NVLFRTKFV 1147 (1163)
Q Consensus 1139 ~~~~gv~~~ 1147 (1163)
|++|.+...
T Consensus 465 d~~~~~~~~ 473 (517)
T 4ad8_A 465 HHHYKVEKQ 473 (517)
T ss_dssp SEEEEEECC
T ss_pred CEEEEEecc
Confidence 999998773
No 23
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.53 E-value=1.8e-15 Score=156.39 Aligned_cols=163 Identities=13% Similarity=0.197 Sum_probs=104.2
Q ss_pred CceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchh-hhhhhhHHHHHh------hccCC
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQ-VRASNLQELVYK------QGQAG 73 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~-~r~~~~~~~i~~------~~~~~ 73 (1163)
|+|++|.+.||.+|.+. .+ .|.+++++|+||||||||||++||+|++...++.. ..+..+.+.... .....
T Consensus 5 ~k~~~l~l~~~~~~~~~-~~-~~~~~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 82 (227)
T 1qhl_A 5 GKFRSLTLINWNGFFAR-TF-DLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLK 82 (227)
T ss_dssp CEEEEEEEEEETTEEEE-EE-CHHHHHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBC
T ss_pred ceeeEEEEEeeecccCC-EE-EEcCcEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhh
Confidence 89999999999999876 34 68889999999999999999999999998654321 111111000000 00001
Q ss_pred cceEEEEEEEecCCCCCCCCCCCCCCeEEEEEEEE---------------eCC-cee-----EEEC------CeecCHHH
Q 001073 74 ITKATVSIVFDNSDRSRSPLGYEDHPEITVTRQIV---------------VGG-RNK-----YLIN------GKLAQPSQ 126 (1163)
Q Consensus 74 ~~~a~v~~~~~~~~~~~~~~~~~~~~~~~i~r~i~---------------~~~-~~~-----~~in------~~~~~~~~ 126 (1163)
...+.|...+.+. . ..++.+.|++. ++| .+. |+++ +.+++.++
T Consensus 83 ~~i~~v~~~~~~~-~---------~~~v~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d 152 (227)
T 1qhl_A 83 AGVCYSMLDTINS-R---------HQRVVVGVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQARVLPLNE 152 (227)
T ss_dssp SSEEEEEEEEECT-T---------SCEEEEEEEEEECSSTTTCEEEEEEEEESCCTTCCHHHHHEECCSSSCCEECCHHH
T ss_pred cCcEEEEEeeeCC-e---------EEEEEEEecCHHHhccccccccceeecCCcccccccceEEEEecCCCceeecCHHH
Confidence 1223333322221 1 12343333331 111 221 4443 35678899
Q ss_pred HHHHHHHc-CCCCCCCc-------eeeeCchhhHHhcCCchHHHHHHHHHhchhhhHHH
Q 001073 127 VQTLFHSV-QLNVNNPH-------FLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETK 177 (1163)
Q Consensus 127 ~~~~~~~~-~~~~~~~~-------~~~~Qg~v~~~~~~~p~~~~~~~e~~~g~~~~~~~ 177 (1163)
+.+.+..+ |++.+... .+++||++..|+.+ |.+|.. |++++|+..|...
T Consensus 153 v~~~i~~~lGl~~~~F~~~~~y~~v~l~QG~f~~fL~a-~~eR~~-l~~l~~~~~y~~~ 209 (227)
T 1qhl_A 153 LKDKLEAMEGVQFKQFNSITDYHSLMFDLGIIARRLRS-ASDRSK-FYRLIEASLYGGI 209 (227)
T ss_dssp HHHHHHTSTTCEEEECSCHHHHHHHHHHTTSBSSCCCS-HHHHHH-HHHHHHHHHSSSC
T ss_pred HHHHHHHHHCCCHHHhcCccccceEEeccchHHHhhcC-HHHHHH-HHHHHCcHHHHHH
Confidence 99999875 77765433 57899999999998 889999 9999999988643
No 24
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.49 E-value=7e-14 Score=162.76 Aligned_cols=138 Identities=18% Similarity=0.294 Sum_probs=107.4
Q ss_pred CceeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCCCcchhhhhhhhHHHHHhhccCCcceEEEE
Q 001073 1 MYIKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVS 80 (1163)
Q Consensus 1 m~i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~~~~~~~r~~~~~~~i~~~~~~~~~~a~v~ 80 (1163)
|+|.+|.+.||++|.+.++ .|+||+|+|||||||||||||+||++++|+++. .++|. .|...+.|+
T Consensus 38 m~l~~L~i~nf~~l~~v~l--~~~~G~~~lvG~NGaGKStLl~aI~~l~~~~~~--------~~~i~----~g~~~~~v~ 103 (415)
T 4aby_A 38 PRLSRLEIRNLATITQLEL--ELGGGFCAFTGETGAGKSIIVDALGLLLGGRAN--------HDLIR----SGEKELLVT 103 (415)
T ss_dssp CCCCEEEEEEETTEEEEEE--ECCSSEEEEEESHHHHHHHHTHHHHHHTTCCCC--------GGGBC----TTCSEEEEE
T ss_pred cEeeeehhccccceeeEEE--ecCCCcEEEECCCCCCHHHHHHHHHHHhCCCcc--------HHHhc----CCCCeEEEE
Confidence 8899999999999987765 689999999999999999999999999997542 35564 356789999
Q ss_pred EEE-ecCCCCCCCCCCCCCCeEEEEEEEEeCCceeEEECCeecCHHHHHHHHHHcCCCCCCCceeeeCchhhHHhcCCch
Q 001073 81 IVF-DNSDRSRSPLGYEDHPEITVTRQIVVGGRNKYLINGKLAQPSQVQTLFHSVQLNVNNPHFLIMQGRITKVLNMKPP 159 (1163)
Q Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~i~r~i~~~~~~~~~in~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qg~v~~~~~~~p~ 159 (1163)
..| ...+ .+.+.+.|.+...|++.+++||++++..++.++... ...+++|...-.+. +|.
T Consensus 104 ~~~~~~~~----------~~~~~l~r~~~~~~~~~i~ing~~~~~~~~~~~~~~-------~i~~~~q~~~l~l~--~~~ 164 (415)
T 4aby_A 104 GFWGDGDE----------SEADSASRRLSSAGRGAARLSGEVVSVRELQEWAQG-------RLTIHWQHSAVSLL--SPA 164 (415)
T ss_dssp EEC------------------CEEEEEEETTSCEEEEETTEEECHHHHHHHHTT-------TEEEETTTCTTTTS--SHH
T ss_pred EEEEecCC----------CceEEEEEEEecCCceEEEECCEECCHHHHHHHHhh-------ceEEecCccccccc--CHH
Confidence 998 6432 245688998888888999999999998888887632 24567787644333 799
Q ss_pred HHHHHHHHHhch
Q 001073 160 EILSMLEEAAGT 171 (1163)
Q Consensus 160 ~~~~~~e~~~g~ 171 (1163)
.++.+++...+.
T Consensus 165 ~~r~~ld~~~~~ 176 (415)
T 4aby_A 165 NQRGLLDRRVTK 176 (415)
T ss_dssp HHHHHHHTTCHH
T ss_pred HHHHHHHHHhcc
Confidence 999999888764
No 25
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.47 E-value=2e-13 Score=152.90 Aligned_cols=94 Identities=30% Similarity=0.369 Sum_probs=81.6
Q ss_pred ccccccccChHHHHHHHHHHHHHH--hccCCCCEEEeecCccCCCHHhHHHHHHHHhhh-CCCCeEEEEEeCcchhhhcc
Q 001073 1063 WKQSLSELSGGQRSLLALSLILAL--LLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH-FPHSQFIVVSLKEGMFNNAN 1139 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal--~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~-~~~~q~i~it~~~~~~~~a~ 1139 (1163)
...++..||||||++++||+.+|+ ....+||+++||||+++||+..+..+.++|... ..+.|+|+|||++.++..||
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d 321 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAAD 321 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCS
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCC
Confidence 356799999999999888755544 445788999999999999999999999999875 34679999999999999999
Q ss_pred ceeeeeeeCCceEEEEe
Q 001073 1140 VLFRTKFVDGVSTVQRT 1156 (1163)
Q Consensus 1140 ~~~gv~~~~g~S~v~~~ 1156 (1163)
+++.+.+.+|.|+|..+
T Consensus 322 ~~~~l~~~~g~s~v~~~ 338 (339)
T 3qkt_A 322 HVIRISLENGSSKVEVV 338 (339)
T ss_dssp EEEEEEEETTEEEEEEC
T ss_pred EEEEEEecCCccEEEEc
Confidence 99999999999999765
No 26
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.42 E-value=2e-13 Score=143.51 Aligned_cols=81 Identities=23% Similarity=0.321 Sum_probs=71.7
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcchhhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGMFNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~~~~a~~~ 1141 (1163)
.+++..||||||||++||++|+ .+|+++||||||++||+.++..+.++|.++.. +..+|+|||+.+...+||++
T Consensus 140 ~~~~~~LSgGq~QRv~iAral~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i 215 (235)
T 3tif_A 140 NHKPNQLSGGQQQRVAIARALA----NNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERI 215 (235)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHT----TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEE
T ss_pred hCChhhCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEE
Confidence 4679999999999999999997 68899999999999999999999999988643 78999999999988899998
Q ss_pred eeeeeeCCc
Q 001073 1142 FRTKFVDGV 1150 (1163)
Q Consensus 1142 ~gv~~~~g~ 1150 (1163)
+- |.+|.
T Consensus 216 ~~--l~~G~ 222 (235)
T 3tif_A 216 IY--LKDGE 222 (235)
T ss_dssp EE--EETTE
T ss_pred EE--EECCE
Confidence 54 55663
No 27
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.41 E-value=9.5e-12 Score=141.23 Aligned_cols=91 Identities=26% Similarity=0.337 Sum_probs=79.4
Q ss_pred ccccccChHHHHHHHHHHHHHHhc--cCC-CCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccce
Q 001073 1065 QSLSELSGGQRSLLALSLILALLL--FKP-APLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVL 1141 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~--~~~-~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~ 1141 (1163)
.++..|||||+++++||+.+|+.. ..+ ||++||||||++||+..+..+.++|.......|+|+|||++.+...||++
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~ 355 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVI 355 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEE
Confidence 467889999999999887666532 466 89999999999999999999999998876668999999999988899999
Q ss_pred eeeeeeCCceEEEE
Q 001073 1142 FRTKFVDGVSTVQR 1155 (1163)
Q Consensus 1142 ~gv~~~~g~S~v~~ 1155 (1163)
|-+...+|+|.|..
T Consensus 356 ~~l~k~~~~s~v~~ 369 (371)
T 3auy_A 356 INVKKDGNVSKVKI 369 (371)
T ss_dssp EEEEESSSCEEEEE
T ss_pred EEEEecCCeEEEEe
Confidence 99988889998764
No 28
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.37 E-value=6.7e-13 Score=142.14 Aligned_cols=87 Identities=20% Similarity=0.213 Sum_probs=73.1
Q ss_pred hccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchh
Q 001073 1058 AFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMF 1135 (1163)
Q Consensus 1058 ~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~ 1135 (1163)
.......+++..||||||||++||.+|+ ..|+++||||||+|||+.++..+.++|.++. .+.++|+|||+.+.+
T Consensus 132 ~L~~~~~~~~~~LSgGqkQRv~iAraL~----~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 132 GIEHLKDKPTHCLSFGQKKRVAIAGVLV----MEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIV 207 (275)
T ss_dssp TCGGGTTSBGGGSCHHHHHHHHHHHHHT----TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSG
T ss_pred CCchhhcCCcccCCHHHHHHHHHHHHHH----cCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH
Confidence 3344445789999999999999999998 6889999999999999999999999998764 378999999998875
Q ss_pred -hhccceeeeeeeCCc
Q 001073 1136 -NNANVLFRTKFVDGV 1150 (1163)
Q Consensus 1136 -~~a~~~~gv~~~~g~ 1150 (1163)
.+||+++- |.+|.
T Consensus 208 ~~~~drv~~--l~~G~ 221 (275)
T 3gfo_A 208 PLYCDNVFV--MKEGR 221 (275)
T ss_dssp GGGCSEEEE--EETTE
T ss_pred HHhCCEEEE--EECCE
Confidence 57999854 45663
No 29
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.37 E-value=5.5e-13 Score=139.16 Aligned_cols=81 Identities=21% Similarity=0.279 Sum_probs=70.7
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~~~ 1142 (1163)
.+.+..|||||||+++||.+|+ .+|++++|||||++||+.++..+.++|.++. .+..+|++||+......||+++
T Consensus 135 ~~~~~~LSgGq~qrv~laral~----~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~ 210 (224)
T 2pcj_A 135 SRKPYELSGGEQQRVAIARALA----NEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTL 210 (224)
T ss_dssp TCCGGGSCHHHHHHHHHHHHTT----TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEE
T ss_pred hCChhhCCHHHHHHHHHHHHHH----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEE
Confidence 4568899999999999999987 6889999999999999999999999998763 4789999999988878899886
Q ss_pred eeeeeCCc
Q 001073 1143 RTKFVDGV 1150 (1163)
Q Consensus 1143 gv~~~~g~ 1150 (1163)
- |.+|.
T Consensus 211 ~--l~~G~ 216 (224)
T 2pcj_A 211 E--MKDGK 216 (224)
T ss_dssp E--EETTE
T ss_pred E--EECCE
Confidence 4 45663
No 30
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.36 E-value=1.3e-12 Score=138.75 Aligned_cols=87 Identities=22% Similarity=0.292 Sum_probs=73.5
Q ss_pred hccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-C-CCeEEEEEeCcchh
Q 001073 1058 AFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-P-HSQFIVVSLKEGMF 1135 (1163)
Q Consensus 1058 ~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~-~~q~i~it~~~~~~ 1135 (1163)
+......+.+..|||||||+++||++|+ .+|++++|||||++||+.++..+.++|.+.. . +..+|++||+.+.+
T Consensus 117 ~l~~~~~~~~~~LSgGq~qrv~lAraL~----~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~ 192 (253)
T 2nq2_C 117 NLTHLAKREFTSLSGGQRQLILIARAIA----SECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQV 192 (253)
T ss_dssp TCGGGTTSBGGGSCHHHHHHHHHHHHHH----TTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHH
T ss_pred CChHHhcCChhhCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 3334445678999999999999999998 6889999999999999999999999998764 3 78999999998875
Q ss_pred -hhccceeeeeeeCCc
Q 001073 1136 -NNANVLFRTKFVDGV 1150 (1163)
Q Consensus 1136 -~~a~~~~gv~~~~g~ 1150 (1163)
..||+++- +.+|.
T Consensus 193 ~~~~d~v~~--l~~G~ 206 (253)
T 2nq2_C 193 VAIANKTLL--LNKQN 206 (253)
T ss_dssp HHHCSEEEE--EETTE
T ss_pred HHhCCEEEE--EeCCe
Confidence 67999865 45676
No 31
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.35 E-value=1.2e-12 Score=138.62 Aligned_cols=80 Identities=25% Similarity=0.356 Sum_probs=71.0
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
..+..|||||||+++||++|+ .+|+++||||||++||+.++..+.++|.+...+..+|+|||++..+..||+++-
T Consensus 141 ~~~~~LSgGq~qRv~iAraL~----~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~- 215 (247)
T 2ff7_A 141 EQGAGLSGGQRQRIAIARALV----NNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIV- 215 (247)
T ss_dssp TTTTCCCHHHHHHHHHHHHHT----TCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEE-
T ss_pred CCCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEE-
Confidence 457899999999999999997 688999999999999999999999999887567899999999998888999864
Q ss_pred eeeCCc
Q 001073 1145 KFVDGV 1150 (1163)
Q Consensus 1145 ~~~~g~ 1150 (1163)
|.+|.
T Consensus 216 -l~~G~ 220 (247)
T 2ff7_A 216 -MEKGK 220 (247)
T ss_dssp -EETTE
T ss_pred -EECCE
Confidence 45664
No 32
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.34 E-value=1.2e-12 Score=141.90 Aligned_cols=80 Identities=26% Similarity=0.366 Sum_probs=71.3
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
.....||||||||++||++|+ .+||++||||||++||+.+...|.++|.....+.++|+|||+..++..||+++-
T Consensus 186 ~~g~~LSGGqrQRvaiARAL~----~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~i~v- 260 (306)
T 3nh6_A 186 ERGLKLSGGEKQRVAIARTIL----KAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILV- 260 (306)
T ss_dssp TTSBCCCHHHHHHHHHHHHHH----HCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTCSEEEE-
T ss_pred CCcCCCCHHHHHHHHHHHHHH----hCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcCCEEEE-
Confidence 456799999999999999998 578999999999999999999999999887778899999999999999999964
Q ss_pred eeeCCc
Q 001073 1145 KFVDGV 1150 (1163)
Q Consensus 1145 ~~~~g~ 1150 (1163)
|.+|.
T Consensus 261 -l~~G~ 265 (306)
T 3nh6_A 261 -IKDGC 265 (306)
T ss_dssp -EETTE
T ss_pred -EECCE
Confidence 55663
No 33
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.34 E-value=1.5e-12 Score=138.99 Aligned_cols=87 Identities=18% Similarity=0.308 Sum_probs=73.0
Q ss_pred hccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-
Q 001073 1058 AFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF- 1135 (1163)
Q Consensus 1058 ~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~- 1135 (1163)
+......+++..|||||||+++||++|+ .+|++++|||||+|||+.++..+.++|.++. .+..+|+|||+.+.+
T Consensus 142 ~l~~~~~~~~~~LSgGqkQrv~iAraL~----~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~ 217 (257)
T 1g6h_A 142 KLSHLYDRKAGELSGGQMKLVEIGRALM----TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL 217 (257)
T ss_dssp TCGGGTTSBGGGSCHHHHHHHHHHHHHH----TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTG
T ss_pred CCchhhCCCchhCCHHHHHHHHHHHHHH----cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 3344445789999999999999999998 6789999999999999999999999998763 378999999998765
Q ss_pred hhccceeeeeeeCCc
Q 001073 1136 NNANVLFRTKFVDGV 1150 (1163)
Q Consensus 1136 ~~a~~~~gv~~~~g~ 1150 (1163)
..||+++- |.+|.
T Consensus 218 ~~~d~v~~--l~~G~ 230 (257)
T 1g6h_A 218 NYIDHLYV--MFNGQ 230 (257)
T ss_dssp GGCSEEEE--EETTE
T ss_pred HhCCEEEE--EECCE
Confidence 57999864 45663
No 34
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.33 E-value=1.8e-12 Score=139.12 Aligned_cols=80 Identities=24% Similarity=0.387 Sum_probs=71.0
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcchhhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGMFNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~~~~a~~~ 1141 (1163)
.+.+..|||||||+++||++|+ .+|+++||||||++||+.++..+.++|.+... +..+|+|||+...+..||++
T Consensus 151 ~~~~~~LSgGq~QRv~lAraL~----~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v 226 (271)
T 2ixe_A 151 GETGNQLSGGQRQAVALARALI----RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHI 226 (271)
T ss_dssp CGGGTTSCHHHHHHHHHHHHHT----TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEE
T ss_pred cCCcCCCCHHHHHHHHHHHHHh----cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEE
Confidence 4678999999999999999997 68899999999999999999999999988753 78999999999988889998
Q ss_pred eeeeeeCC
Q 001073 1142 FRTKFVDG 1149 (1163)
Q Consensus 1142 ~gv~~~~g 1149 (1163)
+- |.+|
T Consensus 227 ~~--l~~G 232 (271)
T 2ixe_A 227 LF--LKEG 232 (271)
T ss_dssp EE--EETT
T ss_pred EE--EECC
Confidence 64 4566
No 35
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.33 E-value=1.8e-12 Score=138.48 Aligned_cols=80 Identities=20% Similarity=0.315 Sum_probs=71.1
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
+.+..|||||||+++||++|+ .+||++||||||++||+.++..+.++|.+...+..+|+|||++..+..||+++-
T Consensus 151 ~~~~~LSgGqkqRv~lAraL~----~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~- 225 (260)
T 2ghi_A 151 NKGMKLSGGERQRIAIARCLL----KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIIL- 225 (260)
T ss_dssp SSSBCCCHHHHHHHHHHHHHH----HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEE-
T ss_pred CCcCcCCHHHHHHHHHHHHHH----cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEE-
Confidence 457899999999999999998 478999999999999999999999999887667899999999998888999864
Q ss_pred eeeCCc
Q 001073 1145 KFVDGV 1150 (1163)
Q Consensus 1145 ~~~~g~ 1150 (1163)
|.+|.
T Consensus 226 -l~~G~ 230 (260)
T 2ghi_A 226 -LNKGK 230 (260)
T ss_dssp -EETTE
T ss_pred -EECCE
Confidence 55663
No 36
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.33 E-value=1.4e-12 Score=143.68 Aligned_cols=87 Identities=22% Similarity=0.314 Sum_probs=73.3
Q ss_pred hhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcch
Q 001073 1057 VAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGM 1134 (1163)
Q Consensus 1057 ~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~ 1134 (1163)
|+......+.+.+||||||||++||++|+ ..|++++|||||++||+.++..+.++|.++. .+.++|+|||+++.
T Consensus 151 vgL~~~~~~~~~~LSGGqkQRVaIArAL~----~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~ 226 (366)
T 3tui_C 151 VGLGDKHDSYPSNLSGGQKQRVAIARALA----SNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDV 226 (366)
T ss_dssp HTCGGGTTCCTTTSCHHHHHHHHHHHHTT----TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHH
T ss_pred cCCchHhcCChhhCCHHHHHHHHHHHHHh----cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 34444456789999999999999999997 6889999999999999999999999998864 37899999999887
Q ss_pred h-hhccceeeeeeeCC
Q 001073 1135 F-NNANVLFRTKFVDG 1149 (1163)
Q Consensus 1135 ~-~~a~~~~gv~~~~g 1149 (1163)
+ .+||+++- |.+|
T Consensus 227 ~~~~aDrv~v--l~~G 240 (366)
T 3tui_C 227 VKRICDCVAV--ISNG 240 (366)
T ss_dssp HHHHCSEEEE--EETT
T ss_pred HHHhCCEEEE--EECC
Confidence 5 56999854 4555
No 37
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.33 E-value=1.5e-12 Score=138.64 Aligned_cols=82 Identities=22% Similarity=0.257 Sum_probs=70.3
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhh-hccc
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFN-NANV 1140 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~-~a~~ 1140 (1163)
..+.+..|||||||+++||++|+ .+|+++||||||++||+.++..+.++|.++. .+..+|++||+.+.+. .||+
T Consensus 153 ~~~~~~~LSgGqkQRv~lAraL~----~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~ 228 (263)
T 2olj_A 153 AHAYPDSLSGGQAQRVAIARALA----MEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDR 228 (263)
T ss_dssp TTSCGGGSCHHHHHHHHHHHHHT----TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSE
T ss_pred hcCChhhCCHHHHHHHHHHHHHH----CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCE
Confidence 34678999999999999999997 6889999999999999999999999998763 4789999999988754 7999
Q ss_pred eeeeeeeCCc
Q 001073 1141 LFRTKFVDGV 1150 (1163)
Q Consensus 1141 ~~gv~~~~g~ 1150 (1163)
++- |.+|.
T Consensus 229 v~~--l~~G~ 236 (263)
T 2olj_A 229 VLF--MDGGY 236 (263)
T ss_dssp EEE--EETTE
T ss_pred EEE--EECCE
Confidence 864 45663
No 38
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.32 E-value=1.3e-12 Score=137.46 Aligned_cols=82 Identities=22% Similarity=0.203 Sum_probs=70.1
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcch-hhhcc
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGM-FNNAN 1139 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~-~~~a~ 1139 (1163)
..+.+..|||||||+++||++|+ .+|++++|||||+|||+.++..+.++|.++.. +..+|++||+.+. ...||
T Consensus 120 ~~~~~~~LSgGqkqRv~lAral~----~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d 195 (240)
T 2onk_A 120 LDRKPARLSGGERQRVALARALV----IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLAD 195 (240)
T ss_dssp TTCCGGGSCHHHHHHHHHHHHHT----TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCS
T ss_pred hcCChhhCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 34678999999999999999997 68899999999999999999999999987642 7899999999875 56799
Q ss_pred ceeeeeeeCCc
Q 001073 1140 VLFRTKFVDGV 1150 (1163)
Q Consensus 1140 ~~~gv~~~~g~ 1150 (1163)
+++- |.+|.
T Consensus 196 ~i~~--l~~G~ 204 (240)
T 2onk_A 196 EVAV--MLNGR 204 (240)
T ss_dssp EEEE--EETTE
T ss_pred EEEE--EECCE
Confidence 9864 45653
No 39
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.32 E-value=1.6e-12 Score=139.01 Aligned_cols=82 Identities=21% Similarity=0.278 Sum_probs=70.5
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccc
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~ 1140 (1163)
..+.+..|||||||+++||++|+ .+|+++||||||+|||+.++..+.++|.++. .+..+|+|||+.+.+ .+||+
T Consensus 147 ~~~~~~~LSgGq~qRv~lAraL~----~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~ 222 (262)
T 1b0u_A 147 QGKYPVHLSGGQQQRVSIARALA----MEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSH 222 (262)
T ss_dssp HTSCGGGSCHHHHHHHHHHHHHH----TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSE
T ss_pred hcCCcccCCHHHHHHHHHHHHHh----cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 35678999999999999999998 6889999999999999999999999998763 478999999998875 47999
Q ss_pred eeeeeeeCCc
Q 001073 1141 LFRTKFVDGV 1150 (1163)
Q Consensus 1141 ~~gv~~~~g~ 1150 (1163)
++- |.+|.
T Consensus 223 v~~--l~~G~ 230 (262)
T 1b0u_A 223 VIF--LHQGK 230 (262)
T ss_dssp EEE--EETTE
T ss_pred EEE--EECCE
Confidence 854 45663
No 40
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.32 E-value=2.3e-12 Score=136.68 Aligned_cols=81 Identities=21% Similarity=0.224 Sum_probs=69.9
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhh-hccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFN-NANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~-~a~~~ 1141 (1163)
.+++..|||||||+++||++|+ .+|++++|||||++||+.++..+.++|.+.. .+..+|++||+.+.+. +||++
T Consensus 141 ~~~~~~LSgGq~qRv~lAraL~----~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v 216 (256)
T 1vpl_A 141 KDRVSTYSKGMVRKLLIARALM----VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRI 216 (256)
T ss_dssp GSBGGGCCHHHHHHHHHHHHHT----TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEE
T ss_pred cCChhhCCHHHHHHHHHHHHHH----cCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEE
Confidence 4578899999999999999997 6889999999999999999999999998764 4789999999988765 59998
Q ss_pred eeeeeeCCc
Q 001073 1142 FRTKFVDGV 1150 (1163)
Q Consensus 1142 ~gv~~~~g~ 1150 (1163)
+- |.+|.
T Consensus 217 ~~--l~~G~ 223 (256)
T 1vpl_A 217 AL--IHNGT 223 (256)
T ss_dssp EE--EETTE
T ss_pred EE--EECCE
Confidence 64 45663
No 41
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.31 E-value=2.8e-12 Score=136.33 Aligned_cols=81 Identities=22% Similarity=0.381 Sum_probs=65.0
Q ss_pred cccccc-cChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhh--cc
Q 001073 1064 KQSLSE-LSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNN--AN 1139 (1163)
Q Consensus 1064 ~~~~~~-lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~--a~ 1139 (1163)
.+++.. |||||||+++||++|+ .+|+++||||||++||+.++..+.++|..+. .+..+|+|||+.+.... ||
T Consensus 137 ~~~~~~~LSgGqkQrv~iAraL~----~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d 212 (250)
T 2d2e_A 137 SRYLNEGFSGGEKKRNEILQLLV----LEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPD 212 (250)
T ss_dssp GSBTTCC----HHHHHHHHHHHH----HCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCS
T ss_pred cCCcccCCCHHHHHHHHHHHHHH----cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCC
Confidence 356778 9999999999999998 4779999999999999999999999998874 47899999999887664 59
Q ss_pred ceeeeeeeCCc
Q 001073 1140 VLFRTKFVDGV 1150 (1163)
Q Consensus 1140 ~~~gv~~~~g~ 1150 (1163)
+++- |.+|.
T Consensus 213 ~v~~--l~~G~ 221 (250)
T 2d2e_A 213 KVHV--MMDGR 221 (250)
T ss_dssp EEEE--EETTE
T ss_pred EEEE--EECCE
Confidence 8764 45553
No 42
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.30 E-value=5.5e-12 Score=134.26 Aligned_cols=79 Identities=28% Similarity=0.275 Sum_probs=68.6
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhcc-c
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNAN-V 1140 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~-~ 1140 (1163)
..+++..|||||||+++||++|+ .+|++++|||||++||+..+..+.++|.++.. .+|++||+...+ ..|| +
T Consensus 122 ~~~~~~~LSgGqkqRv~lAraL~----~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~ 195 (263)
T 2pjz_A 122 LRRKLYKLSAGQSVLVRTSLALA----SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYK 195 (263)
T ss_dssp GGSBGGGSCHHHHHHHHHHHHHH----TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSE
T ss_pred hcCChhhCCHHHHHHHHHHHHHH----hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCce
Confidence 34678999999999999999998 68899999999999999999999999988755 999999998764 6799 8
Q ss_pred eeeeeeeCC
Q 001073 1141 LFRTKFVDG 1149 (1163)
Q Consensus 1141 ~~gv~~~~g 1149 (1163)
++- |.+|
T Consensus 196 i~~--l~~G 202 (263)
T 2pjz_A 196 AYF--LVGN 202 (263)
T ss_dssp EEE--EETT
T ss_pred EEE--EECC
Confidence 754 4455
No 43
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.30 E-value=2.8e-12 Score=135.40 Aligned_cols=84 Identities=20% Similarity=0.209 Sum_probs=71.6
Q ss_pred ccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcch-hhhc
Q 001073 1061 GVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGM-FNNA 1138 (1163)
Q Consensus 1061 ~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~-~~~a 1138 (1163)
....+++..|||||||+++||++|+ .+|++++|||||++||+.++..+.++|.+.. .+..+|++||+... ...|
T Consensus 131 ~~~~~~~~~LSgGq~qrv~lAraL~----~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~ 206 (240)
T 1ji0_A 131 ERLKQLGGTLSGGEQQMLAIGRALM----SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVA 206 (240)
T ss_dssp TTTTSBSSSSCHHHHHHHHHHHHHT----TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHC
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHH----cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhC
Confidence 3345678999999999999999997 6889999999999999999999999998764 57899999999864 5789
Q ss_pred cceeeeeeeCCc
Q 001073 1139 NVLFRTKFVDGV 1150 (1163)
Q Consensus 1139 ~~~~gv~~~~g~ 1150 (1163)
|+++- |.+|.
T Consensus 207 d~v~~--l~~G~ 216 (240)
T 1ji0_A 207 HYGYV--LETGQ 216 (240)
T ss_dssp SEEEE--EETTE
T ss_pred CEEEE--EECCE
Confidence 99864 45664
No 44
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.30 E-value=3e-12 Score=134.67 Aligned_cols=81 Identities=20% Similarity=0.276 Sum_probs=69.8
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHh---hhCCCCeEEEEEeCcchhhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIK---THFPHSQFIVVSLKEGMFNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~---~~~~~~q~i~it~~~~~~~~a~~ 1140 (1163)
.+.+..||||||||++||++|+ .+|+++||||||++||+.++..+.++|. ....+.++|+|||+.+....||+
T Consensus 122 ~~~~~~LSgGqkqRv~lAraL~----~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~ 197 (237)
T 2cbz_A 122 GEKGVNLSGGQKQRVSLARAVY----SNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDV 197 (237)
T ss_dssp STTSBCCCHHHHHHHHHHHHHH----HCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSE
T ss_pred cCCCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCE
Confidence 3568899999999999999998 4789999999999999999999999884 34457899999999998888999
Q ss_pred eeeeeeeCCc
Q 001073 1141 LFRTKFVDGV 1150 (1163)
Q Consensus 1141 ~~gv~~~~g~ 1150 (1163)
++- |.+|.
T Consensus 198 v~~--l~~G~ 205 (237)
T 2cbz_A 198 IIV--MSGGK 205 (237)
T ss_dssp EEE--EETTE
T ss_pred EEE--EeCCE
Confidence 865 45663
No 45
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.29 E-value=2.8e-12 Score=138.04 Aligned_cols=84 Identities=20% Similarity=0.228 Sum_probs=70.8
Q ss_pred ccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC-CCeE--EEEEeCcchh-h
Q 001073 1061 GVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP-HSQF--IVVSLKEGMF-N 1136 (1163)
Q Consensus 1061 ~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~-~~q~--i~it~~~~~~-~ 1136 (1163)
....+.+..|||||||+++||++|+ .+|+++||||||++||+.++..+.++|.+... +..+ |+|||+.+.+ .
T Consensus 153 ~~~~~~~~~LSgGqkqRv~lAraL~----~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~ 228 (279)
T 2ihy_A 153 AKAQQYIGYLSTGEKQRVMIARALM----GQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITA 228 (279)
T ss_dssp GGTTSBGGGSCHHHHHHHHHHHHHH----TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCT
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHh----CCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHH
Confidence 3345678999999999999999998 68899999999999999999999999987643 6778 9999998764 6
Q ss_pred hccceeeeeeeCCc
Q 001073 1137 NANVLFRTKFVDGV 1150 (1163)
Q Consensus 1137 ~a~~~~gv~~~~g~ 1150 (1163)
.||+++- |.+|.
T Consensus 229 ~~d~v~~--l~~G~ 240 (279)
T 2ihy_A 229 NFSKILL--LKDGQ 240 (279)
T ss_dssp TCCEEEE--EETTE
T ss_pred hCCEEEE--EECCE
Confidence 7999864 45663
No 46
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.29 E-value=1.6e-12 Score=137.68 Aligned_cols=79 Identities=20% Similarity=0.353 Sum_probs=69.8
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
..+..|||||||+++||++|+ .+|++++|||||++||+.++..+.++|.....+..+|++||+...+..||+++-
T Consensus 135 ~~~~~LSgGq~qrv~lAral~----~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~- 209 (243)
T 1mv5_A 135 ERGVKISGGQRQRLAIARAFL----RNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYF- 209 (243)
T ss_dssp TTSBCCCHHHHHHHHHHHHHH----HCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEE-
T ss_pred cCcCcCCHHHHHHHHHHHHHh----cCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEE-
Confidence 457899999999999999998 477999999999999999999999999876567899999999998888999865
Q ss_pred eeeCC
Q 001073 1145 KFVDG 1149 (1163)
Q Consensus 1145 ~~~~g 1149 (1163)
|.+|
T Consensus 210 -l~~G 213 (243)
T 1mv5_A 210 -IEKG 213 (243)
T ss_dssp -EETT
T ss_pred -EECC
Confidence 4455
No 47
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.29 E-value=3.9e-12 Score=136.46 Aligned_cols=84 Identities=18% Similarity=0.223 Sum_probs=72.1
Q ss_pred ccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhh-hc
Q 001073 1061 GVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFN-NA 1138 (1163)
Q Consensus 1061 ~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~-~a 1138 (1163)
....+.+..|||||||+++||++|+ .+|++++|||||++||+.++..+.++|.+.. .+..+|++||+.+.+. +|
T Consensus 130 ~~~~~~~~~LSgGq~qRv~lAraL~----~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~ 205 (266)
T 2yz2_A 130 SFKDRVPFFLSGGEKRRVAIASVIV----HEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHV 205 (266)
T ss_dssp HHTTCCGGGSCHHHHHHHHHHHHHT----TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGC
T ss_pred ccccCChhhCCHHHHHHHHHHHHHH----cCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC
Confidence 4445778999999999999999997 6889999999999999999999999998763 4789999999988765 69
Q ss_pred cceeeeeeeCCc
Q 001073 1139 NVLFRTKFVDGV 1150 (1163)
Q Consensus 1139 ~~~~gv~~~~g~ 1150 (1163)
|+++- |.+|.
T Consensus 206 d~v~~--l~~G~ 215 (266)
T 2yz2_A 206 DRVVV--LEKGK 215 (266)
T ss_dssp SEEEE--EETTE
T ss_pred CEEEE--EECCE
Confidence 99864 45663
No 48
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.29 E-value=1.9e-12 Score=138.34 Aligned_cols=91 Identities=22% Similarity=0.231 Sum_probs=72.6
Q ss_pred hhccccccccccccChHHHHHHHHHHHHHH-hcc-CCCCEEEeecCccCCCHHhHHHHHHHHhhhC-C-CCeEEEEEeCc
Q 001073 1057 VAFGGVWKQSLSELSGGQRSLLALSLILAL-LLF-KPAPLYILDEVDAALDLSHTQNIGRMIKTHF-P-HSQFIVVSLKE 1132 (1163)
Q Consensus 1057 ~~~~~~~~~~~~~lSgGek~~~~ia~~lal-~~~-~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~-~~q~i~it~~~ 1132 (1163)
+.......+.+..||||||||++||++|+. |.. ..|+++||||||+|||+.++..+.++|.++. . +..+|+|||+.
T Consensus 129 ~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl 208 (266)
T 4g1u_C 129 TDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDL 208 (266)
T ss_dssp TTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCH
T ss_pred cCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCH
Confidence 334444456789999999999999999983 221 1679999999999999999999999998764 3 45899999998
Q ss_pred chh-hhccceeeeeeeCC
Q 001073 1133 GMF-NNANVLFRTKFVDG 1149 (1163)
Q Consensus 1133 ~~~-~~a~~~~gv~~~~g 1149 (1163)
+.+ .+||+++- |.+|
T Consensus 209 ~~~~~~~d~v~v--l~~G 224 (266)
T 4g1u_C 209 NLAALYADRIML--LAQG 224 (266)
T ss_dssp HHHHHHCSEEEE--EETT
T ss_pred HHHHHhCCEEEE--EECC
Confidence 875 47999864 4455
No 49
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.27 E-value=4.3e-12 Score=134.07 Aligned_cols=87 Identities=20% Similarity=0.290 Sum_probs=72.5
Q ss_pred hccccccccccccChHHHHHHHHHHHHHHhccCCCC-------EEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEE
Q 001073 1058 AFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAP-------LYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVS 1129 (1163)
Q Consensus 1058 ~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p-------~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it 1129 (1163)
+......+.+..|||||||+++||++|+. +|+ +++|||||++||+.++..+.++|..+. .+..+|++|
T Consensus 115 ~l~~~~~~~~~~LSgGq~qrv~lAraL~~----~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivt 190 (249)
T 2qi9_C 115 ALDDKLGRSTNQLSGGEWQRVRLAAVVLQ----ITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSS 190 (249)
T ss_dssp TCGGGTTSBGGGCCHHHHHHHHHHHHHHH----HCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CChhHhcCChhhCCHHHHHHHHHHHHHHc----CCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 34444456799999999999999999985 557 999999999999999999999998763 478999999
Q ss_pred eCcchh-hhccceeeeeeeCCc
Q 001073 1130 LKEGMF-NNANVLFRTKFVDGV 1150 (1163)
Q Consensus 1130 ~~~~~~-~~a~~~~gv~~~~g~ 1150 (1163)
|+.+.+ .+||+++- |.+|.
T Consensus 191 Hd~~~~~~~~d~v~~--l~~G~ 210 (249)
T 2qi9_C 191 HDLNHTLRHAHRAWL--LKGGK 210 (249)
T ss_dssp SCHHHHHHHCSEEEE--EETTE
T ss_pred CCHHHHHHhCCEEEE--EECCE
Confidence 998876 68999864 45663
No 50
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.26 E-value=9.2e-12 Score=133.47 Aligned_cols=80 Identities=20% Similarity=0.341 Sum_probs=68.1
Q ss_pred cccc-ccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhh--ccc
Q 001073 1065 QSLS-ELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNN--ANV 1140 (1163)
Q Consensus 1065 ~~~~-~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~--a~~ 1140 (1163)
+++. .|||||||+++||++|+ ..|+++||||||++||+.++..+.++|..+. .+..+|+|||+...... ||+
T Consensus 159 ~~~~~~LSgGq~QRv~iAraL~----~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~ 234 (267)
T 2zu0_C 159 RSVNVGFSGGEKKRNDILQMAV----LEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDY 234 (267)
T ss_dssp SBTTTTCCHHHHHHHHHHHHHH----HCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSE
T ss_pred CCcccCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCE
Confidence 4565 59999999999999998 4779999999999999999999999998874 46899999999987764 898
Q ss_pred eeeeeeeCCc
Q 001073 1141 LFRTKFVDGV 1150 (1163)
Q Consensus 1141 ~~gv~~~~g~ 1150 (1163)
++- |.+|.
T Consensus 235 v~~--l~~G~ 242 (267)
T 2zu0_C 235 VHV--LYQGR 242 (267)
T ss_dssp EEE--EETTE
T ss_pred EEE--EECCE
Confidence 864 44553
No 51
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.26 E-value=5.8e-12 Score=131.90 Aligned_cols=79 Identities=27% Similarity=0.325 Sum_probs=68.2
Q ss_pred cccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHH-HhhhCCCCeEEEEEeCcchhhhccceeee
Q 001073 1066 SLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRM-IKTHFPHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1066 ~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~-l~~~~~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
.+..|||||||+++||++|+ .+|++++|||||++||+.++..+.++ +.....+..+|++||+...+..||+++-
T Consensus 127 ~~~~LSgGqkqrv~lAral~----~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~- 201 (229)
T 2pze_A 127 GGITLSGGQRARISLARAVY----KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI- 201 (229)
T ss_dssp TCTTSCHHHHHHHHHHHHHH----SCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEE-
T ss_pred CCCcCCHHHHHHHHHHHHHh----cCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEE-
Confidence 46899999999999999998 68899999999999999999999986 4555557899999999988888999865
Q ss_pred eeeCCc
Q 001073 1145 KFVDGV 1150 (1163)
Q Consensus 1145 ~~~~g~ 1150 (1163)
|.+|.
T Consensus 202 -l~~G~ 206 (229)
T 2pze_A 202 -LHEGS 206 (229)
T ss_dssp -EETTE
T ss_pred -EECCE
Confidence 45663
No 52
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.26 E-value=2.8e-12 Score=131.86 Aligned_cols=75 Identities=25% Similarity=0.307 Sum_probs=65.3
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~~ 1141 (1163)
.+.+..|||||||+++||++|+ .+|++++|||||++||+.++..+.++|.+.. .+..+|++||+...+ ..||++
T Consensus 128 ~~~~~~LSgGqkqrv~laraL~----~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v 203 (214)
T 1sgw_A 128 KKKLGELSQGTIRRVQLASTLL----VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENL 203 (214)
T ss_dssp TSBGGGSCHHHHHHHHHHHHTT----SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEG
T ss_pred CCChhhCCHHHHHHHHHHHHHH----hCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 4678999999999999999887 6889999999999999999999999998764 467899999998764 457876
Q ss_pred e
Q 001073 1142 F 1142 (1163)
Q Consensus 1142 ~ 1142 (1163)
+
T Consensus 204 ~ 204 (214)
T 1sgw_A 204 H 204 (214)
T ss_dssp G
T ss_pred E
Confidence 4
No 53
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.24 E-value=8.1e-12 Score=138.61 Aligned_cols=86 Identities=21% Similarity=0.258 Sum_probs=72.1
Q ss_pred hccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcc-h
Q 001073 1058 AFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEG-M 1134 (1163)
Q Consensus 1058 ~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~-~ 1134 (1163)
+..+...+.+..||||||||++||++|+. .|++++||||+++||+..+..+..+|..+. .+..+|+|||+.+ .
T Consensus 122 ~L~~~~~r~p~~LSGGqrQRVaiArAL~~----~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea 197 (381)
T 3rlf_A 122 QLAHLLDRKPKALSGGQRQRVAIGRTLVA----EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA 197 (381)
T ss_dssp TCGGGTTCCGGGSCHHHHHHHHHHHHHHH----CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH
T ss_pred CCchhhcCChhHCCHHHHHHHHHHHHHHc----CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 33444457899999999999999999984 779999999999999999999999998763 3789999999975 5
Q ss_pred hhhccceeeeeeeCC
Q 001073 1135 FNNANVLFRTKFVDG 1149 (1163)
Q Consensus 1135 ~~~a~~~~gv~~~~g 1149 (1163)
+.+||+++- |.+|
T Consensus 198 ~~~aDri~v--l~~G 210 (381)
T 3rlf_A 198 MTLADKIVV--LDAG 210 (381)
T ss_dssp HHHCSEEEE--EETT
T ss_pred HHhCCEEEE--EECC
Confidence 778999853 4555
No 54
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.24 E-value=8.2e-12 Score=137.86 Aligned_cols=86 Identities=21% Similarity=0.253 Sum_probs=71.8
Q ss_pred ccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcc-hh
Q 001073 1059 FGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEG-MF 1135 (1163)
Q Consensus 1059 ~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~-~~ 1135 (1163)
..+...+.+..||||||||++||++|+ ..|++++||||+++||+..+..+..+|+.+. .+..+|++||+.. .+
T Consensus 117 L~~~~~~~~~~LSgGq~QRvalAraL~----~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~ 192 (348)
T 3d31_A 117 IEHLLDRNPLTLSGGEQQRVALARALV----TNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEAR 192 (348)
T ss_dssp CTTTTTSCGGGSCHHHHHHHHHHHHTT----SCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred CchHhcCChhhCCHHHHHHHHHHHHHH----cCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 333445678999999999999999997 6889999999999999999999999998763 3789999999976 56
Q ss_pred hhccceeeeeeeCCc
Q 001073 1136 NNANVLFRTKFVDGV 1150 (1163)
Q Consensus 1136 ~~a~~~~gv~~~~g~ 1150 (1163)
..||+++- |.+|.
T Consensus 193 ~~adri~v--l~~G~ 205 (348)
T 3d31_A 193 IMADRIAV--VMDGK 205 (348)
T ss_dssp HHCSEEEE--ESSSC
T ss_pred HhCCEEEE--EECCE
Confidence 78999853 45553
No 55
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.23 E-value=9.4e-12 Score=137.97 Aligned_cols=82 Identities=21% Similarity=0.215 Sum_probs=70.1
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcc-hhhhcc
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEG-MFNNAN 1139 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~-~~~~a~ 1139 (1163)
..+.+..||||||||++||++|+ ..|++++||||+++||+..+..+..+|.++.. +..+|+|||+.+ .+..||
T Consensus 127 ~~r~~~~LSGGq~QRvalArAL~----~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad 202 (362)
T 2it1_A 127 LNRYPWQLSGGQQQRVAIARALV----KEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMAD 202 (362)
T ss_dssp TTCCGGGSCHHHHHHHHHHHHHT----TCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS
T ss_pred hhCChhhCCHHHHHHHHHHHHHH----cCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence 34678999999999999999997 68899999999999999999999999987632 789999999976 467899
Q ss_pred ceeeeeeeCCc
Q 001073 1140 VLFRTKFVDGV 1150 (1163)
Q Consensus 1140 ~~~gv~~~~g~ 1150 (1163)
+++- |.+|.
T Consensus 203 ri~v--l~~G~ 211 (362)
T 2it1_A 203 RIAV--IREGE 211 (362)
T ss_dssp EEEE--EETTE
T ss_pred EEEE--EECCE
Confidence 9853 55653
No 56
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.23 E-value=1e-11 Score=136.92 Aligned_cols=88 Identities=25% Similarity=0.226 Sum_probs=72.4
Q ss_pred hhhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhh--CCCCeEEEEEeCcc
Q 001073 1056 CVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH--FPHSQFIVVSLKEG 1133 (1163)
Q Consensus 1056 ~~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~--~~~~q~i~it~~~~ 1133 (1163)
.++..+...+.+..||||||||++||++|+ ..|++++||||+++||+..+..+...|... ..+.++|+|||+.+
T Consensus 125 ~~gL~~~~~r~~~~LSGGq~QRValArAL~----~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ 200 (359)
T 3fvq_A 125 LTGISELAGRYPHELSGGQQQRAALARALA----PDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE 200 (359)
T ss_dssp HHTCGGGTTSCGGGSCHHHHHHHHHHHHHT----TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred HcCCchHhcCChhhCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 344555566789999999999999999997 678999999999999999999998866553 34789999999975
Q ss_pred -hhhhccceeeeeeeCC
Q 001073 1134 -MFNNANVLFRTKFVDG 1149 (1163)
Q Consensus 1134 -~~~~a~~~~gv~~~~g 1149 (1163)
.+..||+++- |.+|
T Consensus 201 ea~~~aDri~v--l~~G 215 (359)
T 3fvq_A 201 EALQYADRIAV--MKQG 215 (359)
T ss_dssp HHHHHCSEEEE--EETT
T ss_pred HHHHHCCEEEE--EECC
Confidence 5678999853 5555
No 57
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.23 E-value=1.1e-11 Score=137.19 Aligned_cols=88 Identities=22% Similarity=0.238 Sum_probs=73.1
Q ss_pred hhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcch
Q 001073 1057 VAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGM 1134 (1163)
Q Consensus 1057 ~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~ 1134 (1163)
++..+...+.+.+||||||||++||++|+ ..|++++||||+++||+..+..+..+|.++. .+..+|+|||+.+.
T Consensus 121 ~~L~~~~~r~~~~LSgGq~QRvalArAL~----~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 196 (359)
T 2yyz_A 121 LLIDNLLDRKPTQLSGGQQQRVALARALV----KQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAE 196 (359)
T ss_dssp TTCGGGTTSCGGGSCHHHHHHHHHHHHHT----TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHH
T ss_pred cCCchHhcCChhhCCHHHHHHHHHHHHHH----cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 34444456789999999999999999997 6889999999999999999999999998763 27899999999764
Q ss_pred -hhhccceeeeeeeCCc
Q 001073 1135 -FNNANVLFRTKFVDGV 1150 (1163)
Q Consensus 1135 -~~~a~~~~gv~~~~g~ 1150 (1163)
+..||+++- |.+|.
T Consensus 197 ~~~~adri~v--l~~G~ 211 (359)
T 2yyz_A 197 AMTMASRIAV--FNQGK 211 (359)
T ss_dssp HHHHCSEEEE--EETTE
T ss_pred HHHhCCEEEE--EECCE
Confidence 678999853 45553
No 58
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.23 E-value=6e-11 Score=137.91 Aligned_cols=78 Identities=23% Similarity=0.299 Sum_probs=69.8
Q ss_pred cccccc-ChHHHHHHHHHHHHHHhccCCC--CEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccce
Q 001073 1065 QSLSEL-SGGQRSLLALSLILALLLFKPA--PLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVL 1141 (1163)
Q Consensus 1065 ~~~~~l-SgGek~~~~ia~~lal~~~~~~--p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~ 1141 (1163)
.++..+ ||||+++++||++|+ .+| |++||||||++||+.....+.++|..+.++.|+|+|||++.++..||++
T Consensus 290 ~~~~~~lSgGe~qrl~lA~~l~----~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i 365 (415)
T 4aby_A 290 GPLSDVASGGELSRVMLAVSTV----LGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHH 365 (415)
T ss_dssp CBGGGCSCHHHHHHHHHHHHHH----HCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEE
T ss_pred cchhhhcCHhHHHHHHHHHHHH----hCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeE
Confidence 445555 999999999999776 456 9999999999999999999999999887789999999999999999999
Q ss_pred eeeee
Q 001073 1142 FRTKF 1146 (1163)
Q Consensus 1142 ~gv~~ 1146 (1163)
|-+..
T Consensus 366 ~~l~k 370 (415)
T 4aby_A 366 YKVEK 370 (415)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98865
No 59
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.22 E-value=1.3e-11 Score=136.98 Aligned_cols=87 Identities=28% Similarity=0.290 Sum_probs=72.6
Q ss_pred hccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcc-h
Q 001073 1058 AFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEG-M 1134 (1163)
Q Consensus 1058 ~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~-~ 1134 (1163)
+..+...+.+.+||||||||++||++|+ ..|++++||||+++||+..+..+..+|..+. .+..+|+|||+.+ .
T Consensus 129 ~L~~~~~~~~~~LSGGq~QRvalAraL~----~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~ 204 (353)
T 1oxx_K 129 DIHHVLNHFPRELSGAQQQRVALARALV----KDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADI 204 (353)
T ss_dssp TCGGGTTSCGGGSCHHHHHHHHHHHHHT----TCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHH
T ss_pred CCchHhcCChhhCCHHHHHHHHHHHHHH----hCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 3444456789999999999999999997 6889999999999999999999999998763 2789999999976 4
Q ss_pred hhhccceeeeeeeCCc
Q 001073 1135 FNNANVLFRTKFVDGV 1150 (1163)
Q Consensus 1135 ~~~a~~~~gv~~~~g~ 1150 (1163)
+..||+++- |.+|.
T Consensus 205 ~~~adri~v--l~~G~ 218 (353)
T 1oxx_K 205 FAIADRVGV--LVKGK 218 (353)
T ss_dssp HHHCSEEEE--EETTE
T ss_pred HHhCCEEEE--EECCE
Confidence 678999853 55663
No 60
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.22 E-value=1e-11 Score=137.07 Aligned_cols=83 Identities=22% Similarity=0.272 Sum_probs=70.4
Q ss_pred cccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcch-hhhc
Q 001073 1062 VWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGM-FNNA 1138 (1163)
Q Consensus 1062 ~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~-~~~a 1138 (1163)
...+.+.+||||||||++||++|+ ..|++++||||+++||+..+..+..+|..+.. +..+|+|||+.+. +..|
T Consensus 138 ~~~r~~~~LSGGq~QRvalArAL~----~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~a 213 (355)
T 1z47_A 138 YANRFPHELSGGQQQRVALARALA----PRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVA 213 (355)
T ss_dssp GTTSCGGGSCHHHHHHHHHHHHHT----TCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC
T ss_pred HhcCCcccCCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhC
Confidence 345678999999999999999997 67899999999999999999999999987642 7899999999764 6779
Q ss_pred cceeeeeeeCCc
Q 001073 1139 NVLFRTKFVDGV 1150 (1163)
Q Consensus 1139 ~~~~gv~~~~g~ 1150 (1163)
|+++- |.+|.
T Consensus 214 dri~v--l~~G~ 223 (355)
T 1z47_A 214 DRVLV--LHEGN 223 (355)
T ss_dssp SEEEE--EETTE
T ss_pred CEEEE--EECCE
Confidence 99853 55663
No 61
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.22 E-value=1.7e-11 Score=136.89 Aligned_cols=84 Identities=21% Similarity=0.256 Sum_probs=70.9
Q ss_pred ccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcch-hhh
Q 001073 1061 GVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGM-FNN 1137 (1163)
Q Consensus 1061 ~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~-~~~ 1137 (1163)
+...+.+.+||||||||++||++|+ ..|++++||||+++||+..+..+..+|.++. .+..+|+|||+.+. +..
T Consensus 131 ~~~~r~~~~LSGGq~QRvalArAL~----~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ 206 (372)
T 1g29_1 131 ELLNRKPRELSGGQRQRVALGRAIV----RKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTM 206 (372)
T ss_dssp GGTTCCGGGSCHHHHHHHHHHHHHH----TCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHH
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHh----cCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHh
Confidence 3345678999999999999999998 5789999999999999999999999998763 27899999999764 678
Q ss_pred ccceeeeeeeCCc
Q 001073 1138 ANVLFRTKFVDGV 1150 (1163)
Q Consensus 1138 a~~~~gv~~~~g~ 1150 (1163)
||+++- |.+|.
T Consensus 207 adri~v--l~~G~ 217 (372)
T 1g29_1 207 GDRIAV--MNRGV 217 (372)
T ss_dssp CSEEEE--EETTE
T ss_pred CCEEEE--EeCCE
Confidence 999853 55663
No 62
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.20 E-value=1.5e-11 Score=137.89 Aligned_cols=76 Identities=24% Similarity=0.317 Sum_probs=67.9
Q ss_pred ccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeeeeC
Q 001073 1069 ELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKFVD 1148 (1163)
Q Consensus 1069 ~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~~~ 1148 (1163)
.||||||||++||++|+ ..|++++||||+++||+..+..+..+|+....+..+|+|||+.+.+..||+++- |.+
T Consensus 155 ~LSGGqrQRvalARAL~----~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~v--l~~ 228 (390)
T 3gd7_A 155 VLSHGHKQLMCLARSVL----SKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLV--IEE 228 (390)
T ss_dssp TSCHHHHHHHHHHHHHH----TTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEE--EET
T ss_pred cCCHHHHHHHHHHHHHh----cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEE--EEC
Confidence 49999999999999998 678999999999999999999999999887678899999999998889999854 455
Q ss_pred Cc
Q 001073 1149 GV 1150 (1163)
Q Consensus 1149 g~ 1150 (1163)
|.
T Consensus 229 G~ 230 (390)
T 3gd7_A 229 NK 230 (390)
T ss_dssp TE
T ss_pred CE
Confidence 53
No 63
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.20 E-value=1.4e-11 Score=137.10 Aligned_cols=88 Identities=18% Similarity=0.197 Sum_probs=73.2
Q ss_pred hhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC--CCeEEEEEeCcch
Q 001073 1057 VAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP--HSQFIVVSLKEGM 1134 (1163)
Q Consensus 1057 ~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~--~~q~i~it~~~~~ 1134 (1163)
++..+...+.+.+||||||||++||++|+ ..|++++||||+++||+..+..+..+|.++.. +..+|++||+.+.
T Consensus 129 ~~L~~~~~r~~~~LSGGq~QRvalArAL~----~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 204 (372)
T 1v43_A 129 LQIEELLNRYPAQLSGGQRQRVAVARAIV----VEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVE 204 (372)
T ss_dssp TTCGGGTTSCTTTCCSSCHHHHHHHHHHT----TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred cCChhHhcCChhhCCHHHHHHHHHHHHHh----cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 34444456789999999999999999997 68899999999999999999999999987632 7899999999764
Q ss_pred -hhhccceeeeeeeCCc
Q 001073 1135 -FNNANVLFRTKFVDGV 1150 (1163)
Q Consensus 1135 -~~~a~~~~gv~~~~g~ 1150 (1163)
+..||+++- |.+|.
T Consensus 205 a~~~adri~v--l~~G~ 219 (372)
T 1v43_A 205 AMTMGDRIAV--MNRGQ 219 (372)
T ss_dssp HHHHCSEEEE--EETTE
T ss_pred HHHhCCEEEE--EECCE
Confidence 678999853 55663
No 64
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.20 E-value=1.7e-11 Score=132.41 Aligned_cols=79 Identities=27% Similarity=0.307 Sum_probs=67.2
Q ss_pred cccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHH-hhhCCCCeEEEEEeCcchhhhccceeee
Q 001073 1066 SLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMI-KTHFPHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1066 ~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l-~~~~~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
.+..|||||||+++||++|+ .+|++++|||||++||+.++..+.+++ .....+..+|+|||+...+..||+++-
T Consensus 156 ~~~~LSgGq~QRv~lAraL~----~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~- 230 (290)
T 2bbs_A 156 GGITLSGGQRARISLARAVY----KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI- 230 (290)
T ss_dssp --CCCCHHHHHHHHHHHHHH----SCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEE-
T ss_pred ccCcCCHHHHHHHHHHHHHH----CCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEE-
Confidence 46799999999999999998 688999999999999999999999864 455557899999999998888999864
Q ss_pred eeeCCc
Q 001073 1145 KFVDGV 1150 (1163)
Q Consensus 1145 ~~~~g~ 1150 (1163)
|.+|.
T Consensus 231 -l~~G~ 235 (290)
T 2bbs_A 231 -LHEGS 235 (290)
T ss_dssp -EETTE
T ss_pred -EECCe
Confidence 55663
No 65
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.16 E-value=4.8e-11 Score=143.45 Aligned_cols=79 Identities=20% Similarity=0.254 Sum_probs=72.1
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
+....||||||||++||++|+ .+||+++|||||++||+.+...+.+.|.....+.++|+|||+..+...||+++-
T Consensus 475 ~~~~~LSgGqrQrv~lARal~----~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~v- 549 (587)
T 3qf4_A 475 RGGRNFSGGQKQRLSIARALV----KKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILV- 549 (587)
T ss_dssp SSSCSSCHHHHHHHHHHHHHH----TCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEE-
T ss_pred CCCCCcCHHHHHHHHHHHHHH----cCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEE-
Confidence 457899999999999999997 688999999999999999999999999888788999999999999999999965
Q ss_pred eeeCC
Q 001073 1145 KFVDG 1149 (1163)
Q Consensus 1145 ~~~~g 1149 (1163)
|.+|
T Consensus 550 -l~~G 553 (587)
T 3qf4_A 550 -LHEG 553 (587)
T ss_dssp -EETT
T ss_pred -EECC
Confidence 5566
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.15 E-value=5.7e-11 Score=133.81 Aligned_cols=84 Identities=20% Similarity=0.331 Sum_probs=71.7
Q ss_pred cccccccChHHHHHHHHHHHHHHhc--cCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLL--FKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~--~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~ 1140 (1163)
.+++..|||||+++++||++|++.. ..+||++||||||++||+..+..+..+|..+. .+.++|+|||+++.+..||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 3678999999999999999988521 25779999999999999999999999998764 47899999999999999999
Q ss_pred eeeeeeeCC
Q 001073 1141 LFRTKFVDG 1149 (1163)
Q Consensus 1141 ~~gv~~~~g 1149 (1163)
++- |.+|
T Consensus 354 ~~~--l~~G 360 (365)
T 3qf7_A 354 KLR--ITGG 360 (365)
T ss_dssp EEE--EETT
T ss_pred EEE--EECC
Confidence 865 4455
No 67
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.14 E-value=6.5e-11 Score=142.42 Aligned_cols=80 Identities=25% Similarity=0.382 Sum_probs=71.5
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
.....||||||||++||++|+ .+||+++|||||++||+.+...+.+.|....++.++|+|||+..++..||+++-
T Consensus 473 ~~g~~LSgGq~Qrv~lAral~----~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~- 547 (578)
T 4a82_A 473 ERGVKLSGGQKQRLSIARIFL----NNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVV- 547 (578)
T ss_dssp GGGTTSCHHHHHHHHHHHHHH----HCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEE-
T ss_pred cCCCcCCHHHHHHHHHHHHHH----cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEE-
Confidence 356799999999999999998 578999999999999999999999999888778899999999999999999964
Q ss_pred eeeCCc
Q 001073 1145 KFVDGV 1150 (1163)
Q Consensus 1145 ~~~~g~ 1150 (1163)
|.+|.
T Consensus 548 -l~~G~ 552 (578)
T 4a82_A 548 -IENGH 552 (578)
T ss_dssp -EETTE
T ss_pred -EECCE
Confidence 55663
No 68
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.12 E-value=6.1e-11 Score=142.95 Aligned_cols=80 Identities=26% Similarity=0.405 Sum_probs=71.5
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
.....||||||||++||++|+ .+||+++|||||++||+.++..+.+.|.+..++.++|+|||++.++..||+++-
T Consensus 476 ~~~~~LSgGq~qr~~iAral~----~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~- 550 (582)
T 3b5x_A 476 ENGTSLSGGQRQRVAIARALL----RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILV- 550 (582)
T ss_pred CCCCcCCHHHHHHHHHHHHHH----cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEE-
Confidence 346799999999999999997 688999999999999999999999999887778899999999999999999864
Q ss_pred eeeCCc
Q 001073 1145 KFVDGV 1150 (1163)
Q Consensus 1145 ~~~~g~ 1150 (1163)
|.+|.
T Consensus 551 -l~~G~ 555 (582)
T 3b5x_A 551 -VDEGE 555 (582)
T ss_pred -EECCE
Confidence 45663
No 69
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.12 E-value=5.8e-11 Score=143.12 Aligned_cols=80 Identities=26% Similarity=0.397 Sum_probs=71.3
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
.....||||||||++||++|+ .+||+++|||||++||+.++..+.+.|.+..++.++|+|||++.++..||+++-
T Consensus 476 ~~~~~LSgGq~qrl~iAral~----~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~- 550 (582)
T 3b60_A 476 ENGVLLSGGQRQRIAIARALL----RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVV- 550 (582)
T ss_dssp TTSCSSCHHHHHHHHHHHHHH----HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEE-
T ss_pred CCCCCCCHHHHHHHHHHHHHH----hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEE-
Confidence 356799999999999999998 578999999999999999999999999887668899999999999999999865
Q ss_pred eeeCCc
Q 001073 1145 KFVDGV 1150 (1163)
Q Consensus 1145 ~~~~g~ 1150 (1163)
|.+|.
T Consensus 551 -l~~G~ 555 (582)
T 3b60_A 551 -VEDGI 555 (582)
T ss_dssp -EETTE
T ss_pred -EECCE
Confidence 45663
No 70
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.12 E-value=7.4e-11 Score=142.38 Aligned_cols=78 Identities=24% Similarity=0.374 Sum_probs=70.5
Q ss_pred cccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeee
Q 001073 1066 SLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTK 1145 (1163)
Q Consensus 1066 ~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~ 1145 (1163)
....||||||||++||++|+ .+||+++|||||++||+.+...+.+.|.+...+.++|+|||+..++..||+++-
T Consensus 488 ~g~~LSgGq~Qrv~iAral~----~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~-- 561 (598)
T 3qf4_B 488 NGEDLSQGQRQLLAITRAFL----ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIV-- 561 (598)
T ss_dssp HHTTSCHHHHHHHHHHHHHH----TCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEE--
T ss_pred CCCCCCHHHHHHHHHHHHHh----cCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEE--
Confidence 45789999999999999997 688999999999999999999999999887778999999999999999999965
Q ss_pred eeCC
Q 001073 1146 FVDG 1149 (1163)
Q Consensus 1146 ~~~g 1149 (1163)
|.+|
T Consensus 562 l~~G 565 (598)
T 3qf4_B 562 LRDG 565 (598)
T ss_dssp ECSS
T ss_pred EECC
Confidence 4455
No 71
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.10 E-value=1.2e-10 Score=137.09 Aligned_cols=78 Identities=24% Similarity=0.350 Sum_probs=68.6
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchh-hhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~-~~a~~ 1140 (1163)
.+++..|||||||+++||.+|+ .+|+++||||||+|||+..+..+.++|.++. .+..+|+|||+.+.+ .+||+
T Consensus 380 ~~~~~~LSGGq~QRv~iAraL~----~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDr 455 (538)
T 3ozx_A 380 ESNVNDLSGGELQKLYIAATLA----KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADR 455 (538)
T ss_dssp TSBGGGCCHHHHHHHHHHHHHH----SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSE
T ss_pred cCChhhCCHHHHHHHHHHHHHH----cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 4678999999999999999998 6889999999999999999999999998864 478899999998765 46999
Q ss_pred eeeee
Q 001073 1141 LFRTK 1145 (1163)
Q Consensus 1141 ~~gv~ 1145 (1163)
++-..
T Consensus 456 i~vl~ 460 (538)
T 3ozx_A 456 IIVFK 460 (538)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 96543
No 72
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.10 E-value=8.8e-11 Score=141.96 Aligned_cols=79 Identities=24% Similarity=0.329 Sum_probs=70.3
Q ss_pred cccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeee
Q 001073 1066 SLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTK 1145 (1163)
Q Consensus 1066 ~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~ 1145 (1163)
....||||||||++||++|+ .+||+++|||||++||+.++..+.+.|.+...+.++|+|||++.++..||+++-
T Consensus 480 ~~~~LSgGq~qrv~iAral~----~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~-- 553 (595)
T 2yl4_A 480 KGVLLSGGQKQRIAIARALL----KNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAV-- 553 (595)
T ss_dssp SSCCCCHHHHHHHHHHHHHH----HCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEE--
T ss_pred CCCcCCHHHHHHHHHHHHHH----cCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEE--
Confidence 35899999999999999998 578999999999999999999999999887668899999999999999999864
Q ss_pred eeCCc
Q 001073 1146 FVDGV 1150 (1163)
Q Consensus 1146 ~~~g~ 1150 (1163)
|.+|.
T Consensus 554 l~~G~ 558 (595)
T 2yl4_A 554 LDQGK 558 (595)
T ss_dssp EETTE
T ss_pred EECCE
Confidence 45553
No 73
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.08 E-value=1.1e-10 Score=139.55 Aligned_cols=78 Identities=23% Similarity=0.383 Sum_probs=68.0
Q ss_pred ccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh-hhccc
Q 001073 1063 WKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1063 ~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~-~~a~~ 1140 (1163)
..+.+..|||||||+++||.+|+ ..|+++||||||++||+.++..+.++|..+. .+..+|+|||+...+ ..||+
T Consensus 222 ~~~~~~~LSGGekQRvaIAraL~----~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adr 297 (607)
T 3bk7_A 222 LDRELHQLSGGELQRVAIAAALL----RKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDV 297 (607)
T ss_dssp GGSBGGGCCHHHHHHHHHHHHHH----SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSE
T ss_pred hCCChhhCCHHHHHHHHHHHHHh----cCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCE
Confidence 35678999999999999999998 6889999999999999999999999998763 478999999998764 56998
Q ss_pred eeee
Q 001073 1141 LFRT 1144 (1163)
Q Consensus 1141 ~~gv 1144 (1163)
++-.
T Consensus 298 i~vl 301 (607)
T 3bk7_A 298 IHVV 301 (607)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8543
No 74
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.08 E-value=1.5e-10 Score=136.35 Aligned_cols=82 Identities=22% Similarity=0.359 Sum_probs=71.1
Q ss_pred hhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcch-h
Q 001073 1057 VAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGM-F 1135 (1163)
Q Consensus 1057 ~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~-~ 1135 (1163)
+.+.....+.+..|||||||+++||.+|+ ..|+++||||||++||+..+..+.++|.++..+..+|+|||+... .
T Consensus 126 l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~----~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~ 201 (538)
T 3ozx_A 126 LNMTNLWNKDANILSGGGLQRLLVAASLL----READVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLD 201 (538)
T ss_dssp TTCGGGTTSBGGGCCHHHHHHHHHHHHHH----SCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHH
T ss_pred cCCchhhcCChhhCCHHHHHHHHHHHHHH----cCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHH
Confidence 34444556789999999999999999998 688999999999999999999999999987668899999999765 5
Q ss_pred hhcccee
Q 001073 1136 NNANVLF 1142 (1163)
Q Consensus 1136 ~~a~~~~ 1142 (1163)
..||+++
T Consensus 202 ~~~d~i~ 208 (538)
T 3ozx_A 202 YLTDLIH 208 (538)
T ss_dssp HHCSEEE
T ss_pred hhCCEEE
Confidence 6689874
No 75
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.08 E-value=1e-10 Score=139.29 Aligned_cols=78 Identities=26% Similarity=0.330 Sum_probs=68.2
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchh-hhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~-~~a~~ 1140 (1163)
.+++..|||||||+++||.+|+ .+|++++|||||+|||+.++..+.++|.++. .+..+|+|||+.+.+ .+||+
T Consensus 462 ~~~~~~LSGGqkQRv~iAraL~----~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDr 537 (608)
T 3j16_B 462 DQEVQHLSGGELQRVAIVLALG----IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADK 537 (608)
T ss_dssp SSBSSSCCHHHHHHHHHHHHTT----SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSE
T ss_pred cCChhhCCHHHHHHHHHHHHHH----hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 4678999999999999999887 6889999999999999999999999998763 478999999998764 56999
Q ss_pred eeeee
Q 001073 1141 LFRTK 1145 (1163)
Q Consensus 1141 ~~gv~ 1145 (1163)
++-..
T Consensus 538 vivl~ 542 (608)
T 3j16_B 538 VIVFE 542 (608)
T ss_dssp EEECE
T ss_pred EEEEe
Confidence 97543
No 76
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.07 E-value=1.3e-10 Score=137.57 Aligned_cols=84 Identities=21% Similarity=0.367 Sum_probs=71.1
Q ss_pred hhccccccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh
Q 001073 1057 VAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF 1135 (1163)
Q Consensus 1057 ~~~~~~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~ 1135 (1163)
+++.....+++..|||||||+++||.+|+ ..|+++||||||++||+..+..+.++|..+. .+..+|+|||+...+
T Consensus 146 lgl~~~~~~~~~~LSgGekQRv~iAraL~----~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~ 221 (538)
T 1yqt_A 146 LELENVLEREIQHLSGGELQRVAIAAALL----RNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVL 221 (538)
T ss_dssp TTCTTTTTSBGGGCCHHHHHHHHHHHHHH----SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred cCCChhhhCChhhCCHHHHHHHHHHHHHh----cCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 44444456789999999999999999998 5789999999999999999999999998753 478999999998754
Q ss_pred -hhccceeee
Q 001073 1136 -NNANVLFRT 1144 (1163)
Q Consensus 1136 -~~a~~~~gv 1144 (1163)
..||+++-.
T Consensus 222 ~~~~dri~vl 231 (538)
T 1yqt_A 222 DYLSDIIHVV 231 (538)
T ss_dssp HHHCSEEEEE
T ss_pred HHhCCEEEEE
Confidence 569998643
No 77
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.06 E-value=2.2e-10 Score=136.85 Aligned_cols=78 Identities=26% Similarity=0.385 Sum_probs=68.5
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchh-hhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~-~~a~~ 1140 (1163)
.+++..|||||||+++||.+|+ .+|+++||||||+|||+.++..+.++|..+. .+..+|+|||+..++ .+||+
T Consensus 466 ~~~~~~LSGGe~QRv~iAraL~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adr 541 (607)
T 3bk7_A 466 DRNVEDLSGGELQRVAIAATLL----RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDR 541 (607)
T ss_dssp TSBGGGCCHHHHHHHHHHHHHT----SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSE
T ss_pred cCChhhCCHHHHHHHHHHHHHH----hCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 3578899999999999999987 6889999999999999999999999998863 478999999998865 46999
Q ss_pred eeeee
Q 001073 1141 LFRTK 1145 (1163)
Q Consensus 1141 ~~gv~ 1145 (1163)
++-..
T Consensus 542 v~vl~ 546 (607)
T 3bk7_A 542 LIVFE 546 (607)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 87654
No 78
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.05 E-value=1.9e-10 Score=136.02 Aligned_cols=78 Identities=27% Similarity=0.391 Sum_probs=68.6
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC--CCCeEEEEEeCcchh-hhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF--PHSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~--~~~q~i~it~~~~~~-~~a~~ 1140 (1163)
.+++..|||||||+++||.+|+ .+|+++||||||+|||+.++..+.++|.++. .+..+|+|||+...+ .+||+
T Consensus 396 ~~~~~~LSGGe~qrv~lAraL~----~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~dr 471 (538)
T 1yqt_A 396 DREVNELSGGELQRVAIAATLL----RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDR 471 (538)
T ss_dssp TSBGGGCCHHHHHHHHHHHHHT----SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSE
T ss_pred cCChhhCCHHHHHHHHHHHHHH----hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 4678999999999999999887 6889999999999999999999999998864 378999999998765 57999
Q ss_pred eeeee
Q 001073 1141 LFRTK 1145 (1163)
Q Consensus 1141 ~~gv~ 1145 (1163)
++-+.
T Consensus 472 v~vl~ 476 (538)
T 1yqt_A 472 LMVFE 476 (538)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 87654
No 79
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.04 E-value=4.4e-10 Score=133.82 Aligned_cols=77 Identities=22% Similarity=0.372 Sum_probs=67.4
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcch-hhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGM-FNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~-~~~a~~~ 1141 (1163)
.+.+..|||||||+++||.+|+ ..|++++|||||++||+..+..+..+|+.+. .+..+|+|||+... ...||++
T Consensus 216 ~~~~~~LSgGe~Qrv~iAraL~----~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv 291 (608)
T 3j16_B 216 KRDIEKLSGGELQRFAIGMSCV----QEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFV 291 (608)
T ss_dssp GSCTTTCCHHHHHHHHHHHHHH----SCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEE
T ss_pred CCChHHCCHHHHHHHHHHHHHH----hCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 4678999999999999999998 5789999999999999999999999998864 46789999999875 5569988
Q ss_pred eee
Q 001073 1142 FRT 1144 (1163)
Q Consensus 1142 ~gv 1144 (1163)
+-.
T Consensus 292 ~vl 294 (608)
T 3j16_B 292 CII 294 (608)
T ss_dssp EEE
T ss_pred EEE
Confidence 644
No 80
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.00 E-value=3.2e-10 Score=148.61 Aligned_cols=78 Identities=23% Similarity=0.350 Sum_probs=71.6
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKF 1146 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~ 1146 (1163)
-..||||||||+|||++|. ++||++||||||++||+.+...|.+.|.+..++.++|+||||..++..||+++= |
T Consensus 1215 G~~LSgGQrQriaiARAll----r~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~V--l 1288 (1321)
T 4f4c_A 1215 GTQLSGGQKQRIAIARALV----RNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAV--V 1288 (1321)
T ss_dssp SCSSCHHHHHHHHHHHHHH----SCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEE--E
T ss_pred CcccCHHHHHHHHHHHHHH----hCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEE--E
Confidence 3679999999999999985 789999999999999999999999999998899999999999999999999964 5
Q ss_pred eCCc
Q 001073 1147 VDGV 1150 (1163)
Q Consensus 1147 ~~g~ 1150 (1163)
.+|.
T Consensus 1289 d~G~ 1292 (1321)
T 4f4c_A 1289 SNGT 1292 (1321)
T ss_dssp SSSS
T ss_pred ECCE
Confidence 6674
No 81
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.99 E-value=3.7e-10 Score=138.66 Aligned_cols=77 Identities=25% Similarity=0.327 Sum_probs=68.0
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCC--EEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAP--LYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p--~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~ 1140 (1163)
.+++..||||||||++||.+|+ ..|+ +++|||||+|||+.++..+.++|..+. .+..+|+|||+.+.+..||+
T Consensus 197 ~~~~~~LSGGe~QRv~iArAL~----~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~d~ 272 (670)
T 3ux8_A 197 SRSAGTLSGGEAQRIRLATQIG----SRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADY 272 (670)
T ss_dssp TCBGGGSCHHHHHHHHHHHHHH----TCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCSE
T ss_pred cCCcccCCHHHHHHHHHHHHHh----hCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCE
Confidence 4678999999999999999998 3444 999999999999999999999998763 47899999999998889999
Q ss_pred eeee
Q 001073 1141 LFRT 1144 (1163)
Q Consensus 1141 ~~gv 1144 (1163)
++-+
T Consensus 273 ii~l 276 (670)
T 3ux8_A 273 LIDI 276 (670)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8743
No 82
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.97 E-value=3.9e-10 Score=139.10 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=68.5
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~~~ 1142 (1163)
.+++..|||||+||++||.+|+. ...+++++||||||+|||+..+..+.++|..+. .+.++|+|||++.++..||+++
T Consensus 800 gq~~~~LSGGErQRV~LAraL~~-~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIi 878 (916)
T 3pih_A 800 GQPATTLSGGEAQRIKLASELRK-RDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHII 878 (916)
T ss_dssp TCCSTTCCHHHHHHHHHHHHHTS-CCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred cCCccCCCHHHHHHHHHHHHHhh-CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEE
Confidence 35788999999999999998863 112257999999999999999999999998763 4789999999999999999997
Q ss_pred ee
Q 001073 1143 RT 1144 (1163)
Q Consensus 1143 gv 1144 (1163)
-+
T Consensus 879 vL 880 (916)
T 3pih_A 879 DL 880 (916)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 83
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.96 E-value=6.2e-10 Score=135.89 Aligned_cols=77 Identities=25% Similarity=0.321 Sum_probs=68.1
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCC-CCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhcccee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKP-APLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANVLF 1142 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~-~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~~~ 1142 (1163)
+++..|||||+|+++||.+|+. .| +.+|||||||++||+.....+..+|+.+. .+..+|+|+|+.+++..||+++
T Consensus 500 R~~~tLSGGEkQRV~LA~aL~~---~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi 576 (972)
T 2r6f_A 500 RSAGTLSGGEAQRIRLATQIGS---RLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLI 576 (972)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTT---CCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEE
T ss_pred CccccCCHHHHHHHHHHHHHhh---CCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE
Confidence 6788999999999999999873 33 48999999999999999999999998764 5789999999999999999986
Q ss_pred ee
Q 001073 1143 RT 1144 (1163)
Q Consensus 1143 gv 1144 (1163)
-+
T Consensus 577 ~L 578 (972)
T 2r6f_A 577 DI 578 (972)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 84
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.96 E-value=6.5e-10 Score=136.52 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=67.7
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhccceee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANVLFR 1143 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~~~g 1143 (1163)
+++..||||||||++||++|+. ...+|+++||||||+|||+.+...+.++|.++. .+.++|+|||++.++..||+++-
T Consensus 539 ~~~~~LSgG~~qrv~iAraL~~-~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~ 617 (670)
T 3ux8_A 539 QPATTLSGGEAQRVKLAAELHR-RSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIID 617 (670)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHS-CCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEE
T ss_pred CCchhCCHHHHHHHHHHHHHhh-CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEE
Confidence 5688999999999999999873 111247999999999999999999999998764 47899999999999899999864
Q ss_pred e
Q 001073 1144 T 1144 (1163)
Q Consensus 1144 v 1144 (1163)
+
T Consensus 618 l 618 (670)
T 3ux8_A 618 L 618 (670)
T ss_dssp E
T ss_pred e
Confidence 3
No 85
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.95 E-value=7.6e-10 Score=135.69 Aligned_cols=77 Identities=21% Similarity=0.292 Sum_probs=68.1
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCC-CCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhcccee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKP-APLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANVLF 1142 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~-~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~~~ 1142 (1163)
+++..|||||+|+++||.+|+. .| +.+|||||||++||+.....+..+|+.+. .+..+|+|+|+..++..||+++
T Consensus 517 r~~~tLSGGEkQRV~LA~aL~~---~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi 593 (993)
T 2ygr_A 517 RAAATLSGGEAQRIRLATQIGS---GLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIV 593 (993)
T ss_dssp CBGGGCCHHHHHHHHHHHHHTT---CCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEE
T ss_pred CCcccCCHHHHHHHHHHHHHhh---CCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEE
Confidence 5788999999999999999873 33 57999999999999999999999988763 5789999999999999999986
Q ss_pred ee
Q 001073 1143 RT 1144 (1163)
Q Consensus 1143 gv 1144 (1163)
-+
T Consensus 594 ~L 595 (993)
T 2ygr_A 594 DI 595 (993)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 86
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.94 E-value=8.9e-10 Score=135.98 Aligned_cols=78 Identities=24% Similarity=0.333 Sum_probs=68.2
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCC-CCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKP-APLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~-~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~~ 1141 (1163)
.+++.+|||||+||++||.+|+. .| +.+|||||||+|||+.....+.++|..+. .+.++|+|||+++++..||++
T Consensus 459 ~r~~~~LSGGe~QRv~LAraL~~---~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~aD~i 535 (916)
T 3pih_A 459 SRSATTLSGGESQRIRLATQIGS---GLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRNADHI 535 (916)
T ss_dssp TSBGGGCCHHHHHHHHHHHHHHT---TCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHTCSEE
T ss_pred cCCcccCCHHHHHHHHHHHHHhh---CCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEE
Confidence 36789999999999999999983 22 24999999999999999999999998875 478999999999999999999
Q ss_pred eee
Q 001073 1142 FRT 1144 (1163)
Q Consensus 1142 ~gv 1144 (1163)
+-+
T Consensus 536 i~l 538 (916)
T 3pih_A 536 IDI 538 (916)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 87
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.94 E-value=6.6e-10 Score=135.68 Aligned_cols=78 Identities=21% Similarity=0.325 Sum_probs=68.4
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCC--CCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKP--APLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~--~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~ 1140 (1163)
.+++..|||||+|+++||.+|+. .| |+++||||||+|||+..+..+.++|..+. .+..+|+|||+...+..||+
T Consensus 840 ~~~~~~LSGGekQRv~LAraL~~---~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDr 916 (972)
T 2r6f_A 840 GQPATTLSGGEAQRVKLAAELHR---RSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADY 916 (972)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHSS---CCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSE
T ss_pred cCchhhCCHHHHHHHHHHHHHhc---CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCE
Confidence 46789999999999999998863 22 58999999999999999999999998764 57899999999998889999
Q ss_pred eeee
Q 001073 1141 LFRT 1144 (1163)
Q Consensus 1141 ~~gv 1144 (1163)
++-+
T Consensus 917 IivL 920 (972)
T 2r6f_A 917 IIDL 920 (972)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8754
No 88
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.94 E-value=9.9e-10 Score=135.48 Aligned_cols=81 Identities=22% Similarity=0.246 Sum_probs=70.3
Q ss_pred cccccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhccc
Q 001073 1062 VWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANV 1140 (1163)
Q Consensus 1062 ~~~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~ 1140 (1163)
...+++..||||||++++||.+|+ .+|+++||||||++||+.++..+.++|.. .+..+|+|||+...+ ..||+
T Consensus 541 ~~~~~~~~LSGGqkQRvaLArAL~----~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adr 614 (986)
T 2iw3_A 541 MIAMPISALSGGWKMKLALARAVL----RNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEY 614 (986)
T ss_dssp HHHSBGGGCCHHHHHHHHHHHHHH----TTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSE
T ss_pred hhcCCcccCCHHHHHHHHHHHHHh----cCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCE
Confidence 345789999999999999999998 57899999999999999999999999988 578999999998765 56998
Q ss_pred eeeeeeeCCc
Q 001073 1141 LFRTKFVDGV 1150 (1163)
Q Consensus 1141 ~~gv~~~~g~ 1150 (1163)
++- |.+|.
T Consensus 615 ii~--L~~G~ 622 (986)
T 2iw3_A 615 IIN--YEGLK 622 (986)
T ss_dssp EEE--EETTE
T ss_pred EEE--EECCe
Confidence 864 34553
No 89
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.93 E-value=7e-10 Score=145.41 Aligned_cols=79 Identities=22% Similarity=0.364 Sum_probs=71.3
Q ss_pred cccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeee
Q 001073 1066 SLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTK 1145 (1163)
Q Consensus 1066 ~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~ 1145 (1163)
.-..||||||||+|||+++- .+||++||||||++||+.++..+.+.|....++.+.|+||||..++..||+++-
T Consensus 551 ~G~~LSGGQkQRiaiARAl~----~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iiv-- 624 (1321)
T 4f4c_A 551 RGTQLSGGQKQRIAIARALV----RNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIIS-- 624 (1321)
T ss_dssp SSCCCCHHHHHHHHHHHHHT----TCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEE--
T ss_pred CCCCCCHHHHHHHHHHHHHc----cCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEE--
Confidence 34689999999999999884 799999999999999999999999999888889999999999999999999974
Q ss_pred eeCCc
Q 001073 1146 FVDGV 1150 (1163)
Q Consensus 1146 ~~~g~ 1150 (1163)
|.+|.
T Consensus 625 l~~G~ 629 (1321)
T 4f4c_A 625 CKNGQ 629 (1321)
T ss_dssp EETTE
T ss_pred eeCCe
Confidence 55663
No 90
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.92 E-value=9.4e-10 Score=134.91 Aligned_cols=78 Identities=21% Similarity=0.321 Sum_probs=68.4
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCC--CCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhccc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKP--APLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANV 1140 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~--~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~ 1140 (1163)
.+++..|||||+|+++||.+|+. .| |+++||||||+|||+..+..+.++|..+. .+..+|+|||+...+..||+
T Consensus 858 ~~~~~~LSGGekQRv~LAraL~~---~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDr 934 (993)
T 2ygr_A 858 GQPAPTLSGGEAQRVKLASELQK---RSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDW 934 (993)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHSS---CCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSE
T ss_pred cCccccCCHHHHHHHHHHHHHHh---CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCE
Confidence 46789999999999999998863 22 58999999999999999999999998764 57899999999999889999
Q ss_pred eeee
Q 001073 1141 LFRT 1144 (1163)
Q Consensus 1141 ~~gv 1144 (1163)
++-+
T Consensus 935 IivL 938 (993)
T 2ygr_A 935 IIDL 938 (993)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8754
No 91
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.90 E-value=1.5e-09 Score=141.96 Aligned_cols=77 Identities=23% Similarity=0.393 Sum_probs=69.9
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKF 1146 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~ 1146 (1163)
...|||||||+++||++|. .+||++||||||++||+.+...+.+.|.....+.++|+|||+..++..||+++- |
T Consensus 1169 G~~LSgGq~Qrv~iARal~----~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~v--l 1242 (1284)
T 3g5u_A 1169 GTQLSGGQKQRIAIARALV----RQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVV--I 1242 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHH----HCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEE--E
T ss_pred CCccCHHHHHHHHHHHHHH----cCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEE--E
Confidence 4689999999999999997 578999999999999999999999999887778999999999999999999864 5
Q ss_pred eCC
Q 001073 1147 VDG 1149 (1163)
Q Consensus 1147 ~~g 1149 (1163)
.+|
T Consensus 1243 ~~G 1245 (1284)
T 3g5u_A 1243 QNG 1245 (1284)
T ss_dssp ETB
T ss_pred ECC
Confidence 566
No 92
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.88 E-value=1.2e-09 Score=133.78 Aligned_cols=77 Identities=22% Similarity=0.325 Sum_probs=67.7
Q ss_pred ccccccChHHHHHHHHHHHHHHhccC--CCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhccce
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFK--PAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANVL 1141 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~--~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~~ 1141 (1163)
+++..|||||+|+++||.+|+. . +++++||||||+|||+..+..+..+|..+. .+..+|+|||+...+..||++
T Consensus 726 ~~~~~LSGGekQRv~LAraL~~---~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDri 802 (842)
T 2vf7_A 726 QPATELSGGEAQRIKLATELRR---SGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWV 802 (842)
T ss_dssp CCGGGCCHHHHHHHHHHHTTSS---CCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEE
T ss_pred CCcccCCHHHHHHHHHHHHHHh---CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEE
Confidence 5788999999999999988762 3 269999999999999999999999998763 578999999999988999998
Q ss_pred eee
Q 001073 1142 FRT 1144 (1163)
Q Consensus 1142 ~gv 1144 (1163)
+-+
T Consensus 803 i~L 805 (842)
T 2vf7_A 803 LDI 805 (842)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 93
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.87 E-value=1.6e-09 Score=133.54 Aligned_cols=78 Identities=23% Similarity=0.323 Sum_probs=67.4
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchh-hhcccee
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMF-NNANVLF 1142 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~-~~a~~~~ 1142 (1163)
.+++..||||||++++||.+|+ .+|+++||||||+|||+.+...+.++|.+. +..+|+|||+.+.+ ..||++|
T Consensus 896 ~~~~~~LSGGQkQRVaLArAL~----~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVi 969 (986)
T 2iw3_A 896 HSRIRGLSGGQKVKLVLAAGTW----QRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVW 969 (986)
T ss_dssp HSCGGGCCHHHHHHHHHHHHHT----TCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEE
T ss_pred CCCccccCHHHHHHHHHHHHHH----hCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEE
Confidence 4578999999999999999886 678999999999999999999999999876 46899999998865 5799987
Q ss_pred eeeeeCC
Q 001073 1143 RTKFVDG 1149 (1163)
Q Consensus 1143 gv~~~~g 1149 (1163)
-+ .+|
T Consensus 970 vL--~~G 974 (986)
T 2iw3_A 970 AV--KDG 974 (986)
T ss_dssp CC--BTT
T ss_pred EE--ECC
Confidence 54 455
No 94
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.87 E-value=1.7e-09 Score=141.34 Aligned_cols=75 Identities=24% Similarity=0.347 Sum_probs=68.2
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceee
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFR 1143 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~g 1143 (1163)
.....||||||||++||++|. .+||++||||||++||+.....+.+.|.....+.++|+||||..++..||+++-
T Consensus 522 ~~g~~LSgGq~QriaiARal~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~v 596 (1284)
T 3g5u_A 522 ERGAQLSGGQKQRIAIARALV----RNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAG 596 (1284)
T ss_dssp SSSCSSCHHHHHHHHHHHHHH----HCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEE
T ss_pred CCCCccCHHHHHHHHHHHHHh----cCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEE
Confidence 346799999999999999997 578999999999999999999999998877778999999999999999999864
No 95
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.85 E-value=2.6e-09 Score=130.75 Aligned_cols=78 Identities=23% Similarity=0.250 Sum_probs=68.0
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCC-CCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchhhhccce
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKP-APLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMFNNANVL 1141 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~-~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~~~a~~~ 1141 (1163)
.+++..|||||+|+++||.+|+. .| +.+|||||||++||+..+..+..+|..+. .+..+|+|||+..++..||++
T Consensus 374 ~r~~~tLSGGe~QRV~LA~aL~~---~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~i 450 (842)
T 2vf7_A 374 DRSTPTLSPGELQRLRLATQLYS---NLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWL 450 (842)
T ss_dssp TCBGGGSCHHHHHHHHHHHHTTT---CCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEE
T ss_pred cCCcCcCCHHHHHHHHHHHHHhh---CCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEE
Confidence 36788999999999999998873 33 15999999999999999999999998764 478999999999999999998
Q ss_pred eee
Q 001073 1142 FRT 1144 (1163)
Q Consensus 1142 ~gv 1144 (1163)
+-+
T Consensus 451 i~l 453 (842)
T 2vf7_A 451 VDV 453 (842)
T ss_dssp EEE
T ss_pred EEe
Confidence 654
No 96
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.81 E-value=3.2e-08 Score=109.85 Aligned_cols=76 Identities=24% Similarity=0.235 Sum_probs=61.9
Q ss_pred cccc-ccChHHHHHHHHHHHHHHh-----ccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhc
Q 001073 1065 QSLS-ELSGGQRSLLALSLILALL-----LFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNA 1138 (1163)
Q Consensus 1065 ~~~~-~lSgGek~~~~ia~~lal~-----~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a 1138 (1163)
.++. .|||||+++++||+.||-. ....||+++||||+++||+..+..+.++|.... ..||++|| ... .|
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~ 334 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GA 334 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TC
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cC
Confidence 4666 8999999999999999831 225779999999999999999999999998764 45777888 444 78
Q ss_pred cceeeee
Q 001073 1139 NVLFRTK 1145 (1163)
Q Consensus 1139 ~~~~gv~ 1145 (1163)
|++|-|.
T Consensus 335 ~~i~~l~ 341 (359)
T 2o5v_A 335 ALTLRAQ 341 (359)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 8887653
No 97
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.73 E-value=2.8e-08 Score=129.03 Aligned_cols=30 Identities=10% Similarity=0.253 Sum_probs=14.8
Q ss_pred HHHHHHHHcCCCCCC-----CceeeeCchhhHHhc
Q 001073 126 QVQTLFHSVQLNVNN-----PHFLIMQGRITKVLN 155 (1163)
Q Consensus 126 ~~~~~~~~~~~~~~~-----~~~~~~Qg~v~~~~~ 155 (1163)
....++..+++..+. .-.|+..|.+..+-.
T Consensus 751 ~~~~lL~~l~l~~~~~~iG~TKVF~r~g~l~~LE~ 785 (1184)
T 1i84_S 751 ACILMIKALELDPNLYRIGQSKIFFRTGVLAHLEE 785 (1184)
T ss_dssp HHHHHHHTTTCCTTTCCBCSSEEEECTTHHHHHHH
T ss_pred HHHHHHHHcCCCccceeEcCeEEEEechHHHHHHH
Confidence 345566666554322 122455666555543
No 98
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.60 E-value=2.7e-07 Score=119.82 Aligned_cols=37 Identities=11% Similarity=0.156 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 248 SAVGEVDRIKAKIAEIDCNTERTRLEIQEMEKQVSNL 284 (1163)
Q Consensus 248 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 284 (1163)
.++.++..+...+..++..+..++..+..++.+...+
T Consensus 861 ~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l 897 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLL 897 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433333
No 99
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.52 E-value=1.9e-08 Score=100.26 Aligned_cols=72 Identities=6% Similarity=-0.007 Sum_probs=59.5
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhH----------------HHHHHHHhhh-CCCCeEEEEE
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHT----------------QNIGRMIKTH-FPHSQFIVVS 1129 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~----------------~~~~~~l~~~-~~~~q~i~it 1129 (1163)
....|||+|++++||.+++ .+|++++||||+++||+.+. ..+..+|..+ ..+..+|+||
T Consensus 81 ~~~~s~g~~qrv~iAral~----~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vt 156 (171)
T 4gp7_A 81 TNVQESARKPLIEMAKDYH----CFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYIL 156 (171)
T ss_dssp CCCSHHHHHHHHHHHHHTT----CEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEE
T ss_pred CCCCHHHHHHHHHHHHHcC----CcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEe
Confidence 4566999999999999887 67899999999999999955 6677776654 3478899999
Q ss_pred eCcchhhhcccee
Q 001073 1130 LKEGMFNNANVLF 1142 (1163)
Q Consensus 1130 ~~~~~~~~a~~~~ 1142 (1163)
|+++....+++++
T Consensus 157 H~~~~~~~~~~~~ 169 (171)
T 4gp7_A 157 NSPEEVEEVVFER 169 (171)
T ss_dssp CSHHHHHHEEEEE
T ss_pred CCHHHhhhhhhcc
Confidence 9999887777665
No 100
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.52 E-value=7.7e-08 Score=96.00 Aligned_cols=71 Identities=6% Similarity=0.004 Sum_probs=56.8
Q ss_pred cccccccChHHHHHHHHHHH-----HHHhccCCCCEEEeec--CccCCCHHhHHHHHHHHhhhCCCCeEEEEEe---Ccc
Q 001073 1064 KQSLSELSGGQRSLLALSLI-----LALLLFKPAPLYILDE--VDAALDLSHTQNIGRMIKTHFPHSQFIVVSL---KEG 1133 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~-----lal~~~~~~p~~~lDE--~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~---~~~ 1133 (1163)
.+.+..||||||++++||.+ ++ .+|++++||| |+++||+.....+.+++.. .+..+|++|| +..
T Consensus 71 ~~~~~~lSgG~~qr~~la~aa~~~~l~----~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~ 144 (178)
T 1ye8_A 71 GSYGVNVQYFEELAIPILERAYREAKK----DRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHP 144 (178)
T ss_dssp TTEEECHHHHHHHHHHHHHHHHHHHHH----CTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSH
T ss_pred cccccCcCHHHHHHHHHHhhccccccc----cCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCch
Confidence 45678899999999999986 65 6789999999 9999999999999888876 4566889997 333
Q ss_pred h-hhhccc
Q 001073 1134 M-FNNANV 1140 (1163)
Q Consensus 1134 ~-~~~a~~ 1140 (1163)
. -..|++
T Consensus 145 ~~~~i~~r 152 (178)
T 1ye8_A 145 LVKEIRRL 152 (178)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhc
Confidence 3 334565
No 101
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.14 E-value=6.9e-07 Score=102.88 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=56.4
Q ss_pred ccccChHHHHHHHHHHH--HHHhccCCCCE----EEeec-CccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcc--hh--
Q 001073 1067 LSELSGGQRSLLALSLI--LALLLFKPAPL----YILDE-VDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEG--MF-- 1135 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~--lal~~~~~~p~----~~lDE-~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~--~~-- 1135 (1163)
+..|||||+++++||++ |+ .+|++ +|||| |+++||+. ...+..++... +..+|+|||+.. +.
T Consensus 233 ~~~LSgGq~qrlalAra~rL~----~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~ 305 (460)
T 2npi_A 233 NKDLYLECISQLGQVVGQRLH----LDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEK 305 (460)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH----HCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHhc----cCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHH
Confidence 78999999999999999 87 47799 99999 99999998 66666677664 456999999977 44
Q ss_pred ---hhccc
Q 001073 1136 ---NNANV 1140 (1163)
Q Consensus 1136 ---~~a~~ 1140 (1163)
.+||+
T Consensus 306 ~~~~~~dr 313 (460)
T 2npi_A 306 VKKTFGPE 313 (460)
T ss_dssp HHHHHHHH
T ss_pred HHHHhccc
Confidence 67888
No 102
>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0
Probab=98.12 E-value=5.6e-09 Score=102.34 Aligned_cols=127 Identities=12% Similarity=0.038 Sum_probs=87.7
Q ss_pred CceEEeecCCCCCCCCChhhHHHHHhhcCCchhHhhhhccCCChHHHHHHHHhcCCeEEecChHHHHHHHhhcCCCccee
Q 001073 556 RRVTIIPLNKIQSHTVPPRVQQAAVRLVGKENAELALSLVGYSDELKTAMEYVFGSTFVCKSIDAAKEVAFSREIRTPSV 635 (1163)
Q Consensus 556 ~~~~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~l~d~i~~~~aie~al~~~l~nivv~~~~~~a~~I~~~k~~~~~~v 635 (1163)
..+++|+|.++ +.+++ +|+.|++.|+| .++++||.++..+..+|.|++..+.||+
T Consensus 16 ~~Gv~G~v~dL--i~v~~----------------------~y~~Aie~alg-~l~~iVVd~~~~A~~~i~~Lk~~~~GRa 70 (166)
T 3l51_B 16 IPGIYGRLGDL--GAIDE----------------------KYDIAISSCCH-ALDYIVVDSIDTAQECVNFLKKHNIGIA 70 (166)
T ss_dssp STTEEEEGGGS--CBCCG----------------------GGHHHHHHHCG-GGGSEEESCHHHHHHHHHHHHHTTCCCC
T ss_pred CCCceEEHHHh--eeeCH----------------------HHHHHHHHHHh-hCceEEECCHHHHHHHHHHHHHcCCCeE
Confidence 46789999998 66654 79999999997 8899988888778889999998899999
Q ss_pred ecCCccccCCccccCCCCCCCC-ChhHHHHHHHHHHHHHHHH-HHHHHHHHH------------HHHHH----HHHHHHH
Q 001073 636 TLEGDIFQPSGLLTGGSRRGGG-DLLRQLHRLAAVESNLVIH-QKRLSEIEA------------KIKEL----LPFQKKY 697 (1163)
Q Consensus 636 T~~G~~~~~~g~i~gg~~~~~~-~~l~~~~~~~~l~~~l~~~-~~~~~~i~~------------~i~~~----~~~~~~i 697 (1163)
| |.|++.+.+...+... ..... ...+.+++++ +.++..+.. +.+.. .....++
T Consensus 71 t-----flpL~~i~~~~~~~~~~~~~~~----~~~a~dlv~~~d~~~~~a~~~llg~tlVv~dl~~A~~~~~~~~~~~r~ 141 (166)
T 3l51_B 71 T-----FIGLDKMTVWAKKMSKIQTPEN----TPRLFDLVKVKNEEIRQAFYFALRDTLVANNLDQATRVAYQRDRRWRV 141 (166)
T ss_dssp C-----EEEGGGTGGGTTSCCCCCCGGG----CCBHHHHCBCSCHHHHHHHHHHHTTCEEESSHHHHHHHHBCSSCBCCE
T ss_pred E-----EEECcccccccccccccccccc----hhhHhheeeCCcHHHHHHHHHHcCCEEEECCHHHHHHHHHhhCCCcEE
Confidence 9 9999887653221100 00000 0123355555 345655554 11111 1234578
Q ss_pred HHHHHHHHHHHhhHHHHHHHhh
Q 001073 698 MDLKAQLELKLYDLSLFQGRAE 719 (1163)
Q Consensus 698 ~~l~~~~~~~~~~~~~~~g~~~ 719 (1163)
||++|++ +.+.|+||||+.
T Consensus 142 VTldGdl---i~~~G~~tGG~~ 160 (166)
T 3l51_B 142 VTLQGQI---IEQSGTMSGGLE 160 (166)
T ss_dssp EETTSCE---ECTTCCEEECCG
T ss_pred EECCCEE---EeCCEEEECCCc
Confidence 8999999 999999999973
No 103
>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1
Probab=97.91 E-value=2.1e-08 Score=104.31 Aligned_cols=84 Identities=18% Similarity=0.154 Sum_probs=60.9
Q ss_pred hhccCcccEEEcCcHHHHHHHHccccCCceEEeecCCCCCCCCChhhHHHHHhhcCCchhHhhhhccCCChHHHHHHHHh
Q 001073 529 TAGGKLFNVIVDTESTGKQLLQNGDLRRRVTIIPLNKIQSHTVPPRVQQAAVRLVGKENAELALSLVGYSDELKTAMEYV 608 (1163)
Q Consensus 529 ~l~~~l~~vvv~~~~~a~~ll~~~~~~~~~~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~l~d~i~~~~aie~al~~~ 608 (1163)
.+.+|..++ +.++.... ...++++||.++ ..|++ +|+.||+.+||..
T Consensus 23 ~~~~~~~~~--------~~ll~~~~-~~~g~~g~l~~l--i~v~~----------------------~~e~Ave~aLg~~ 69 (213)
T 1gxl_A 23 EYRGFSRAV--------RAVFEEKE-RFPGLVDVVSNL--IEVDE----------------------KYSLAVSVLLGGT 69 (213)
T ss_dssp TTTTSCHHH--------HHHHTTTT-SCTTEEEEGGGT--CBCCH----------------------HHHHHHHHHHGGG
T ss_pred HHhhhhHHH--------HHHHHhhh-hhCCCceehhhe--eeeCH----------------------HHHHHHHHHHHHh
Confidence 344555555 66664321 124567888887 66654 6889999999999
Q ss_pred cCCeEEecChHHHHHHHhhcCCCcceeecCCccccCCccccC
Q 001073 609 FGSTFVCKSIDAAKEVAFSREIRTPSVTLEGDIFQPSGLLTG 650 (1163)
Q Consensus 609 l~nivv~~~~~~a~~I~~~k~~~~~~vT~~G~~~~~~g~i~g 650 (1163)
++++||.++.++...|.+++..+.|++| |.|...+.+
T Consensus 70 l~~ivv~~~~~a~~~i~~lk~~~~gr~~-----~lpl~~~~~ 106 (213)
T 1gxl_A 70 AQNIVVRNVDTAKAIVEFLKQNEAGRVT-----ILPLDLIDG 106 (213)
T ss_dssp GGCEEESSHHHHHHHHHHHHHHTCEEEE-----EEETTTSCC
T ss_pred hcEEEECCHHHHHHHHHHHHhcCCCceE-----EEEchhcCC
Confidence 9999888777777888888777789999 888766543
No 104
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.77 E-value=1.9e-06 Score=88.08 Aligned_cols=56 Identities=14% Similarity=0.013 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhh
Q 001073 1072 GGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFN 1136 (1163)
Q Consensus 1072 gGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~ 1136 (1163)
.|||++++||++|+ .+|+++||||||++ ++..+.++|.....+..+| +||+...+.
T Consensus 107 lGq~qrv~lAraL~----~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 107 IVEVAPLAYMRGRT----LNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVD 162 (208)
T ss_dssp SEEEEEGGGGTTCC----BCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC-----
T ss_pred CchHHHHHHHHHHh----cCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHh
Confidence 39999999998886 57899999999999 7888889998874466777 999987654
No 105
>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 2.0A {Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A
Probab=97.74 E-value=5.5e-08 Score=98.38 Aligned_cols=151 Identities=16% Similarity=0.139 Sum_probs=89.5
Q ss_pred HHHhhccCcccEEEcCcHHHHHHHHccccCCceEEeecCCCCCCCCChhhHHHHHhhcCCchhHhhhhccCCChHHHHHH
Q 001073 526 LEVTAGGKLFNVIVDTESTGKQLLQNGDLRRRVTIIPLNKIQSHTVPPRVQQAAVRLVGKENAELALSLVGYSDELKTAM 605 (1163)
Q Consensus 526 ie~~l~~~l~~vvv~~~~~a~~ll~~~~~~~~~~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~l~d~i~~~~aie~al 605 (1163)
++..+.++..++ +.++.... ...+++++|.++ ..|++ +|+.||+.++
T Consensus 8 l~~~~~~~~~~~--------~~~l~~~~-~~~g~~g~l~~l--i~v~~----------------------~~e~Ave~aL 54 (186)
T 1gxj_A 8 DMREYRGFSRAV--------RAVFEEKE-RFPGLVDVVSNL--IEVDE----------------------KYSLAVSVLL 54 (186)
T ss_dssp ------CCCHHH--------HHHHHTGG-GCTTEEEEHHHH--CBCCG----------------------GGHHHHHHHH
T ss_pred HHHHHcchhHHH--------HHHHHhhh-hhCCcceehhhe--eccCH----------------------HHHHHHHHHH
Confidence 333444555666 77775321 124567788777 66654 7899999999
Q ss_pred HHhcCCeEEecChHHHHHHHhhcCCCcceeecCCccccCCccccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 606 EYVFGSTFVCKSIDAAKEVAFSREIRTPSVTLEGDIFQPSGLLTGGSRRGGGDLLRQLHRLAAVESNLVIHQKRLSEIEA 685 (1163)
Q Consensus 606 ~~~l~nivv~~~~~~a~~I~~~k~~~~~~vT~~G~~~~~~g~i~gg~~~~~~~~l~~~~~~~~l~~~l~~~~~~~~~i~~ 685 (1163)
|..++++||.++..+...|.|++..+.|++| |.|...+.++. .... .+....++.+++.+++.++..+..+..
T Consensus 55 G~~l~~ivv~~~~~a~~~i~~lk~~~~gr~t-----flpl~~~~~~~-~~~~-~~~~~~g~~~~~~dlv~~~~~~~~~~~ 127 (186)
T 1gxj_A 55 GGTAQNIVVRNVDTAKAIVEFLKQNEAGRVT-----ILPLDLIDGSF-NRIS-GLENERGFVGYAVDLVKFPSDLEVLGG 127 (186)
T ss_dssp GGGGGCEEESSHHHHHHHHHHHHHHTCCCEE-----EEETTTCCCCC-CCCT-TGGGSTTEEEEHHHHCBCCGGGHHHHH
T ss_pred HHhhhEEEECCHHHHHHHHHHHHhcCCCceE-----EEEccccCCCc-ccch-hcccCCCchHHHHHHccCCHHHHHHHH
Confidence 9999999888776777888888877789999 99977665432 1000 000001111122334444333333222
Q ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 001073 686 ----------------KIKELLPFQKKYMDLKAQLELKLYDLSLFQGRAE 719 (1163)
Q Consensus 686 ----------------~i~~~~~~~~~i~~l~~~~~~~~~~~~~~~g~~~ 719 (1163)
.+.....+..++||++|++ ..+.|.++||..
T Consensus 128 ~~lg~~~v~~~l~~A~~l~~~~~~~~~~VTldG~~---~~~~G~~~gG~~ 174 (186)
T 1gxj_A 128 FLFGNSVVVETLDDAIRMKKKYRLNTRIATLDGEL---ISGRGAITGGRE 174 (186)
T ss_dssp HHHTTCEEESCHHHHHHHHHHHTCCSCEEETTSCE---ECTTSCEEEEEC
T ss_pred HHcCCEEEECCHHHHHHHHHhcCCCceEEeCCCeE---EcCCEEEECCCC
Confidence 1222222334688999999 899899998864
No 106
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.64 E-value=0.012 Score=61.73 Aligned_cols=8 Identities=0% Similarity=-0.292 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 001073 1012 KETLKVTW 1019 (1163)
Q Consensus 1012 ~~~~~~~~ 1019 (1163)
...|....
T Consensus 178 L~~Yerir 185 (256)
T 3na7_A 178 YSFYERIR 185 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444433
No 107
>3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus}
Probab=97.64 E-value=4.3e-07 Score=88.55 Aligned_cols=110 Identities=14% Similarity=0.050 Sum_probs=65.2
Q ss_pred CCChHHHHHHHHhcCCeEEecChHHHHHHHhhcCCCcceeecCCccccCCccccCCCCCCCCChhHHHH-----HHHHHH
Q 001073 596 GYSDELKTAMEYVFGSTFVCKSIDAAKEVAFSREIRTPSVTLEGDIFQPSGLLTGGSRRGGGDLLRQLH-----RLAAVE 670 (1163)
Q Consensus 596 ~~~~aie~al~~~l~nivv~~~~~~a~~I~~~k~~~~~~vT~~G~~~~~~g~i~gg~~~~~~~~l~~~~-----~~~~l~ 670 (1163)
+|+.|++.|+|..++++||.+...+..+|.++ ...||+| |.|++.+.+.... .......+ +...++
T Consensus 31 ~y~~Ave~alG~~l~~iVVd~~~~A~~~i~~~--~~~GR~t-----flpL~~i~~~~~~--~~~~~~~~~~~~~~~~~~a 101 (161)
T 3l51_A 31 STATALEVVAGERLYNVVVDTEVTAKKLLEKG--ELKRRYT-----IIPLNKISARCIA--PETLRVAQNLVGPDNVHVA 101 (161)
T ss_dssp GGHHHHHHHHGGGGGCEEESCHHHHHHHHHHS--CCSSCEE-----EEETTTCCCCCCC--HHHHHHHHHHHCTTSEEEG
T ss_pred hHHHHHHHHhccccceEEECCHHHHHHHHHHH--hhCCcEE-----EEECccccccCcC--HHHHhhhhhcCCCcchhHH
Confidence 68899999999999999998887788888875 3468999 9999887654321 00000000 111123
Q ss_pred HHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 001073 671 SNLVIHQKRLSEIEA----------------KIKELLPFQKKYMDLKAQLELKLYDLSLFQGR 717 (1163)
Q Consensus 671 ~~l~~~~~~~~~i~~----------------~i~~~~~~~~~i~~l~~~~~~~~~~~~~~~g~ 717 (1163)
.++++++.++..+.. .++.......++||++|++ .++.|.++||
T Consensus 102 ~dlv~~d~~~~~a~~~llg~tlv~~dl~~A~~~~~~~~~~~r~VTldGd~---i~~~G~~tGG 161 (161)
T 3l51_A 102 LSLVDYKPELQKGMEFVFGTTFVCNNMDNAKKVAFDKRIMTRTVTLGGDV---FDPHGTLSGG 161 (161)
T ss_dssp GGGEECCGGGHHHHHHHHTTCEEESSHHHHHHHHHCTTTCCCEEETTSCE---ECCC------
T ss_pred HHHhcCCHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCCCCeEEeCCCeE---EcCCEEEecC
Confidence 345555555555444 1111111235788999998 8888999886
No 108
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.63 E-value=0.0072 Score=63.54 Aligned_cols=40 Identities=5% Similarity=0.033 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 341 LKQAVEEKVSAVRKCEEGAADLKKKFEELSKGLEENEKEY 380 (1163)
Q Consensus 341 l~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 380 (1163)
+...+......+..+...+..++..+......+...+.++
T Consensus 44 l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 44 KNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334444444444444444444
No 109
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.58 E-value=6.1e-05 Score=93.40 Aligned_cols=73 Identities=12% Similarity=0.012 Sum_probs=58.3
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHH-HHHhhh--CCCCeEEEEEeCcchhhhccce
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIG-RMIKTH--FPHSQFIVVSLKEGMFNNANVL 1141 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~-~~l~~~--~~~~q~i~it~~~~~~~~a~~~ 1141 (1163)
..++.+|||+++++.|+.. ..+|++++||||++|||+.....+. .++..+ ..+..+|++||..++...||++
T Consensus 731 ~~~stfs~em~~~~~il~~-----a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 731 KGRSTFMEELTDTAEIIRK-----ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp ---CCHHHHHHHHHHHHHH-----CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred HhHHHhhHHHHHHHHHHHh-----ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 3567889999999887765 3788999999999999999888876 556554 2478999999999998888865
Q ss_pred e
Q 001073 1142 F 1142 (1163)
Q Consensus 1142 ~ 1142 (1163)
-
T Consensus 806 ~ 806 (918)
T 3thx_B 806 S 806 (918)
T ss_dssp T
T ss_pred c
Confidence 3
No 110
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.58 E-value=9.5e-05 Score=92.04 Aligned_cols=77 Identities=14% Similarity=0.035 Sum_probs=59.2
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHH-HHHHhhhC--CCCeEEEEEeCcchhhhccceee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNI-GRMIKTHF--PHSQFIVVSLKEGMFNNANVLFR 1143 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~-~~~l~~~~--~~~q~i~it~~~~~~~~a~~~~g 1143 (1163)
...+|+|+..+..++.++.. ..+++++|||||++|+|+.....+ ..++..+. .+..+|++||..++...||++++
T Consensus 719 ~~~lStf~~e~~~~a~il~~--a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~ 796 (934)
T 3thx_A 719 LKGVSTFMAEMLETASILRS--ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPT 796 (934)
T ss_dssp ----CHHHHHHHHHHHHHHH--CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTT
T ss_pred HHhHhhhHHHHHHHHHHHHh--ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccce
Confidence 45678888888888887743 477899999999999999888777 44555442 47899999999999999998865
Q ss_pred ee
Q 001073 1144 TK 1145 (1163)
Q Consensus 1144 v~ 1145 (1163)
|.
T Consensus 797 v~ 798 (934)
T 3thx_A 797 VN 798 (934)
T ss_dssp EE
T ss_pred eE
Confidence 43
No 111
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.58 E-value=7.6e-05 Score=88.55 Aligned_cols=76 Identities=8% Similarity=-0.078 Sum_probs=61.9
Q ss_pred cccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHH-----hHHHHHHHHhhhC-CCCeEEEEEeCc-------
Q 001073 1066 SLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLS-----HTQNIGRMIKTHF-PHSQFIVVSLKE------- 1132 (1163)
Q Consensus 1066 ~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~-----~~~~~~~~l~~~~-~~~q~i~it~~~------- 1132 (1163)
.+..|||||+++++++.+++ ..|+++|+| |+++||.. .+..+..++..+. .+..+|+|||..
T Consensus 350 ~p~~LS~g~~q~~~~a~~l~----~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~ 424 (525)
T 1tf7_A 350 YPESAGLEDHLQIIKSEIND----FKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHS 424 (525)
T ss_dssp CGGGSCHHHHHHHHHHHHHT----TCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCS
T ss_pred ccccCCHHHHHHHHHHHHHh----hCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCccc
Confidence 45789999999999998876 577999999 99999998 8888888887653 478899999997
Q ss_pred ---ch-hhhccceeeeee
Q 001073 1133 ---GM-FNNANVLFRTKF 1146 (1163)
Q Consensus 1133 ---~~-~~~a~~~~gv~~ 1146 (1163)
.. ...||+++-...
T Consensus 425 ~~~~~l~~~~D~vi~L~~ 442 (525)
T 1tf7_A 425 ITDSHISTITDTIILLQY 442 (525)
T ss_dssp SCSSCCTTTCSEEEEEEE
T ss_pred ccCcccceeeeEEEEEEE
Confidence 43 456898874443
No 112
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.45 E-value=1.2e-05 Score=82.02 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=26.0
Q ss_pred ccCCCccccCCCCC-ceEEecCCCCchhhHHHHHHHH
Q 001073 13 SYASRTVVPGFDPY-FNAITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 13 s~~~~~~~~~~~~~-~~~ivG~NGsGKS~i~~ai~~~ 48 (1163)
+|.....+.++.+| +.+|+|||||||||++.+|+..
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 33333334344444 8899999999999999998765
No 113
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.40 E-value=6.6e-05 Score=86.00 Aligned_cols=47 Identities=26% Similarity=0.462 Sum_probs=38.3
Q ss_pred eeEEEecCccccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhCC
Q 001073 3 IKEICLEGFKSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 3 i~~i~l~nFks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+.+|.+.||..+.+.++ .+.+.+++|+|||||||||++.+|+..+-.
T Consensus 9 l~~l~~~~~~~l~~vsl--~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 9 FRSLTLINWNGFFARTF--DFDELVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp EEEEEEEEETTEEEEEE--ECCSSEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred eeEEEEeccccccceEE--EEccceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 56788888888876654 455589999999999999999999888753
No 114
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.36 E-value=0.0001 Score=71.40 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=23.7
Q ss_pred CCC-ceEEecCCCCchhhHHHHHHHHh
Q 001073 24 DPY-FNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 24 ~~~-~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.+| +.+|+|||||||||++.+|+-.+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 455 88999999999999999999988
No 115
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.28 E-value=4.3e-05 Score=81.17 Aligned_cols=45 Identities=27% Similarity=0.356 Sum_probs=29.8
Q ss_pred EEecCc-cccCCCcccc----CCCCC-ceEEecCCCCchhhHHHHHHHHhC
Q 001073 6 ICLEGF-KSYASRTVVP----GFDPY-FNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 6 i~l~nF-ks~~~~~~~~----~~~~~-~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
|++.|. ++|.+..++. .+.+| +.+|+|||||||||++.+|+..+-
T Consensus 8 l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 8 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 455554 3454433221 23344 789999999999999999976553
No 116
>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=97.24 E-value=2.3e-06 Score=88.44 Aligned_cols=65 Identities=12% Similarity=-0.018 Sum_probs=52.1
Q ss_pred ceEEeecCCCCCCCCChhhHHHHHhhcCCchhHhhhhccCCChHHHHHHHHhcCCeEEecChHHHHHHHhhcCCC-ccee
Q 001073 557 RVTIIPLNKIQSHTVPPRVQQAAVRLVGKENAELALSLVGYSDELKTAMEYVFGSTFVCKSIDAAKEVAFSREIR-TPSV 635 (1163)
Q Consensus 557 ~~~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~l~d~i~~~~aie~al~~~l~nivv~~~~~~a~~I~~~k~~~-~~~v 635 (1163)
.++++||.++ +.+++ +|+.||+.++|..++++||.++.++...+.+++..+ .|++
T Consensus 47 ~g~~g~l~dl--i~v~~----------------------~~e~Ave~aLG~~l~~iVV~~~~~a~~~i~~l~~~~~~gr~ 102 (213)
T 2wd5_B 47 NGYHGIVMNN--FECEP----------------------AFYTCVEVTAGNRLFYHIVDSDEVSTKILMEFNKMNLPGEV 102 (213)
T ss_dssp TTEEEEGGGS--EECCG----------------------GGHHHHHHHHTTGGGCEEESCHHHHHHHHHHHHHTTCCCCE
T ss_pred CCceeeHHHh--cccCH----------------------HHHHHHHHHHhHHhhEEEECCHHHHHHHHHHHHhCCCCcce
Confidence 4568888887 56654 789999999999999998887777778888887776 8999
Q ss_pred ecCCccccCCccccC
Q 001073 636 TLEGDIFQPSGLLTG 650 (1163)
Q Consensus 636 T~~G~~~~~~g~i~g 650 (1163)
| |.|...+.+
T Consensus 103 t-----flpl~~~~~ 112 (213)
T 2wd5_B 103 T-----FLPLNKLDV 112 (213)
T ss_dssp E-----EEETTTCCC
T ss_pred E-----EEECcccCc
Confidence 9 888776554
No 117
>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus}
Probab=97.07 E-value=0.00016 Score=71.81 Aligned_cols=143 Identities=11% Similarity=0.091 Sum_probs=96.4
Q ss_pred hhHHHHHhhccCcccEEEcCcHHHHHHHHccccCCceEEeecCCCCCCCCChhhHHHHHhhcCCchhHhhhhccC-CChH
Q 001073 522 TMTALEVTAGGKLFNVIVDTESTGKQLLQNGDLRRRVTIIPLNKIQSHTVPPRVQQAAVRLVGKENAELALSLVG-YSDE 600 (1163)
Q Consensus 522 ~~~aie~~l~~~l~~vvv~~~~~a~~ll~~~~~~~~~~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~l~d~i~-~~~a 600 (1163)
.+..++.. ++..+| +.+++. ...+++|||.++ ..+++ . |+.|
T Consensus 12 ~l~~~~~~--~~~~~v--------~~l~~~---~~~gv~G~l~dL--i~V~~----------------------~kye~A 54 (189)
T 3nwc_A 12 AAEAQREV--RGNRAA--------EELKRS---GIGGIYGTLAEL--IKVKD----------------------EAYALA 54 (189)
T ss_dssp HHHHHHHH--SSCTHH--------HHHTTS---CCCSEEEEHHHH--CEESC----------------------GGGHHH
T ss_pred HHHHHHHh--hHHHHH--------HHHHhc---CCCCceEEHHHh--eeeCh----------------------hhHHHH
Confidence 45555554 555667 766643 245789999887 66654 4 9999
Q ss_pred HHHHHHHhcCCeEEecChHHHHHHHhhcCCCcceeecCCccccCCccccCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 001073 601 LKTAMEYVFGSTFVCKSIDAAKEVAFSREIRTPSVTLEGDIFQPSGLLTGGSRRGGGDLLRQLHRLAAVESNLVIHQKRL 680 (1163)
Q Consensus 601 ie~al~~~l~nivv~~~~~~a~~I~~~k~~~~~~vT~~G~~~~~~g~i~gg~~~~~~~~l~~~~~~~~l~~~l~~~~~~~ 680 (1163)
++.|+|..++++||.+...+..+|.+++..+.||+| |.|.+.+.+...+...+.. +.+++++++++
T Consensus 55 ve~aLG~~l~~iVVd~~~~A~~~i~~Lk~~~~GRat-----flpl~~i~~~~~~~~~g~~---------a~dlv~~d~~~ 120 (189)
T 3nwc_A 55 IEVALGNRADNVVVEDELVAEKAIKYLKEHKLGRLT-----FLPLNKIKPKHVDSSVGLP---------AVDVIEYDQKI 120 (189)
T ss_dssp HHHHHGGGGGCEEESSHHHHHHHHHHHHHTTCCCCC-----EEETTTCCCCCCCSCSSEE---------GGGGEECCGGG
T ss_pred HHHHhccccccEEECCHHHHHHHHHHHHhcCCCceE-----EEECCccccccCCCCCCcE---------EeeeeccCHHH
Confidence 999999999999988877788889999888899999 9999877653322111110 12333444444
Q ss_pred HHHHHHH------------H-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 001073 681 SEIEAKI------------K-ELLPFQKKYMDLKAQLELKLYDLSLFQGRAE 719 (1163)
Q Consensus 681 ~~i~~~i------------~-~~~~~~~~i~~l~~~~~~~~~~~~~~~g~~~ 719 (1163)
..+...+ + ++.+ ..++||++|++ ..+.|.++||+.
T Consensus 121 ~~a~~~llg~tlvv~dl~~A~~l~~-~~r~VTldGd~---i~~~G~~tGG~~ 168 (189)
T 3nwc_A 121 ENAVKFALGDTVIVNSMEEARPHIG-KVRMVTIEGEL---YERSGAITGGHF 168 (189)
T ss_dssp HHHHHHHHTTEEEESCSGGGGGGTT-TSEEEETTSCE---ECTTSCEECSCS
T ss_pred HHHHHHHhCCEEEECCHHHHHHHhC-CCeEEeCCCcE---EECCEEEEeCCC
Confidence 4433311 1 1111 46788999999 899999999974
No 118
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.06 E-value=0.16 Score=48.88 Aligned_cols=34 Identities=15% Similarity=-0.089 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 729 IVKKIEQELEEAKSSAKEKQLLYENSVSAVSVLE 762 (1163)
Q Consensus 729 ~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~ 762 (1163)
++.-++.....+...+..++..+..+...-..++
T Consensus 11 e~~ywk~~~~~~~q~~~~le~El~EFqesSrELE 44 (189)
T 2v71_A 11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELE 44 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444333333
No 119
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.05 E-value=0.00014 Score=76.85 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=23.1
Q ss_pred CCCC-ceEEecCCCCchhhHHHHHHHHhC
Q 001073 23 FDPY-FNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 23 ~~~~-~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
+.+| +.+|+|||||||||++.+|+..+-
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4454 889999999999999999876543
No 120
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.05 E-value=0.00011 Score=78.83 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.9
Q ss_pred CceEEecCCCCchhhHHHHHHHHh
Q 001073 26 YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.+.+|+|||||||||++.+|+..+
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 378999999999999999986554
No 121
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.04 E-value=0.00014 Score=77.29 Aligned_cols=28 Identities=36% Similarity=0.407 Sum_probs=22.9
Q ss_pred CCCC-ceEEecCCCCchhhHHHHHHHHhC
Q 001073 23 FDPY-FNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 23 ~~~~-~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
+.+| +.+|+|||||||||++.+|+..+-
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4444 889999999999999999876543
No 122
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.02 E-value=0.19 Score=48.37 Aligned_cols=16 Identities=31% Similarity=0.304 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 001073 734 EQELEEAKSSAKEKQL 749 (1163)
Q Consensus 734 ~~~l~~l~~~~~~l~~ 749 (1163)
...+..++.++.+...
T Consensus 23 ~q~~~~le~El~EFqe 38 (189)
T 2v71_A 23 KQSFQEARDELVEFQE 38 (189)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 123
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.02 E-value=0.00027 Score=73.05 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.5
Q ss_pred CceEEecCCCCchhhHHHHHHHHh
Q 001073 26 YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.+.+|+|||||||||++..|.-.+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 488999999999999999997655
No 124
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.02 E-value=0.00026 Score=70.82 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=23.9
Q ss_pred CCCCCceEEecCCCCchhhHHHHHHHHh
Q 001073 22 GFDPYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 22 ~~~~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
+|...+.+|+||||||||||+.+|.-.+
T Consensus 2 ~~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 2 SHMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4667799999999999999999997654
No 125
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.01 E-value=0.00023 Score=72.81 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.2
Q ss_pred CceEEecCCCCchhhHHHHHHHHh
Q 001073 26 YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.+.+|+|||||||||++.+|+..+
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 488999999999999999987554
No 126
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.01 E-value=0.0002 Score=74.88 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.2
Q ss_pred CceEEecCCCCchhhHHHHHHHH
Q 001073 26 YFNAITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~ 48 (1163)
.+.+|+|||||||||++.+|+..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38899999999999999998644
No 127
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.00 E-value=0.0002 Score=75.93 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=22.4
Q ss_pred CCCC-ceEEecCCCCchhhHHHHHHHHh
Q 001073 23 FDPY-FNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 23 ~~~~-~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
+.+| +.+|+|||||||||++.+|+..+
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3444 88999999999999999987554
No 128
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.99 E-value=0.00023 Score=74.34 Aligned_cols=28 Identities=36% Similarity=0.464 Sum_probs=22.9
Q ss_pred CCC-CceEEecCCCCchhhHHHHHHHHhC
Q 001073 23 FDP-YFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 23 ~~~-~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
+.+ .+.+|+|||||||||++.+|+..+-
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 344 4889999999999999999876554
No 129
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.98 E-value=0.00022 Score=73.85 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=21.0
Q ss_pred CceEEecCCCCchhhHHHHHHHHh
Q 001073 26 YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.+.+|+|||||||||++.+|+..+
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999987554
No 130
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.96 E-value=0.0002 Score=75.31 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=22.5
Q ss_pred CCCC-ceEEecCCCCchhhHHHHHHHHh
Q 001073 23 FDPY-FNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 23 ~~~~-~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
+.+| +.+|+|||||||||++.+|+..+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4454 78999999999999999987554
No 131
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.96 E-value=0.00032 Score=71.91 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=22.0
Q ss_pred CceEEecCCCCchhhHHHHHHHHh
Q 001073 26 YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.+.+|+|||||||||++.+|...+
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 488999999999999999998776
No 132
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.95 E-value=0.00031 Score=69.70 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=21.5
Q ss_pred ceEEecCCCCchhhHHHHHHHHhC
Q 001073 27 FNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
..+|+|||||||||++..|+-.++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 368999999999999999988875
No 133
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.92 E-value=0.00031 Score=73.41 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=22.9
Q ss_pred CCCCceEEecCCCCchhhHHHHHHHHh
Q 001073 23 FDPYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 23 ~~~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
+.+.+.+|+|||||||||++.+|+..+
T Consensus 22 i~~e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGRDYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECSSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 334789999999999999999987654
No 134
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.91 E-value=0.00023 Score=75.84 Aligned_cols=45 Identities=27% Similarity=0.389 Sum_probs=30.2
Q ss_pred EEecCc-cccCCCc-ccc----CCCC-CceEEecCCCCchhhHHHHHHHHhC
Q 001073 6 ICLEGF-KSYASRT-VVP----GFDP-YFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 6 i~l~nF-ks~~~~~-~~~----~~~~-~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
|++.|. ++|.+.. ++. .+.+ .+.+|+|||||||||++.+|+..+-
T Consensus 8 l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 555554 3554322 221 2334 4789999999999999999976654
No 135
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.90 E-value=0.00026 Score=77.99 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.3
Q ss_pred CceEEecCCCCchhhHHHHHHHH
Q 001073 26 YFNAITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~ 48 (1163)
.+.+|+|||||||||+|.+|...
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48899999999999999998643
No 136
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.90 E-value=0.00032 Score=74.73 Aligned_cols=26 Identities=38% Similarity=0.496 Sum_probs=22.0
Q ss_pred CCCC-ceEEecCCCCchhhHHHHHHHH
Q 001073 23 FDPY-FNAITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 23 ~~~~-~~~ivG~NGsGKS~i~~ai~~~ 48 (1163)
+.+| +.+|+|||||||||++.+|+..
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3444 8899999999999999998765
No 137
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.89 E-value=0.00021 Score=76.90 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.2
Q ss_pred CceEEecCCCCchhhHHHHHHHH
Q 001073 26 YFNAITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~ 48 (1163)
.+.+|+|||||||||++.+|+..
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 48899999999999999998544
No 138
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.89 E-value=0.00019 Score=79.75 Aligned_cols=43 Identities=28% Similarity=0.395 Sum_probs=28.5
Q ss_pred EEecCc-cccCCCcccc----CCCC-CceEEecCCCCchhhHHHHHHHH
Q 001073 6 ICLEGF-KSYASRTVVP----GFDP-YFNAITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 6 i~l~nF-ks~~~~~~~~----~~~~-~~~~ivG~NGsGKS~i~~ai~~~ 48 (1163)
|++.|. ++|.+...+. .+.+ .+.+|+|||||||||+|.+|...
T Consensus 12 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 12 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 555554 4554432221 2334 48899999999999999998654
No 139
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.88 E-value=0.00029 Score=75.20 Aligned_cols=28 Identities=32% Similarity=0.425 Sum_probs=22.9
Q ss_pred CCCC-ceEEecCCCCchhhHHHHHHHHhC
Q 001073 23 FDPY-FNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 23 ~~~~-~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
+.+| +.+|+||||||||||+.+|+..+-
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4444 789999999999999999876653
No 140
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.87 E-value=0.00044 Score=69.54 Aligned_cols=26 Identities=27% Similarity=0.347 Sum_probs=22.4
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
+.+.+|+|||||||||++.+|+-.+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35789999999999999999987653
No 141
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.86 E-value=0.00031 Score=74.91 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=22.3
Q ss_pred CCCC-ceEEecCCCCchhhHHHHHHHHh
Q 001073 23 FDPY-FNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 23 ~~~~-~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
+.+| +.+|+|||||||||++.+|+..+
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3444 88999999999999999986554
No 142
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.85 E-value=0.00027 Score=78.23 Aligned_cols=23 Identities=43% Similarity=0.586 Sum_probs=20.4
Q ss_pred CceEEecCCCCchhhHHHHHHHH
Q 001073 26 YFNAITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~ 48 (1163)
.+.+|+|||||||||+|.+|...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 48899999999999999998644
No 143
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.84 E-value=0.00035 Score=73.18 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=22.3
Q ss_pred CCCC-ceEEecCCCCchhhHHHHHHHHh
Q 001073 23 FDPY-FNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 23 ~~~~-~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
+.+| +.+|+|||||||||++.+|+..+
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344 88999999999999999987554
No 144
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.84 E-value=0.00022 Score=79.08 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=29.4
Q ss_pred EEecCc-cccCCCcccc----CCCC-CceEEecCCCCchhhHHHHHHHHh
Q 001073 6 ICLEGF-KSYASRTVVP----GFDP-YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 6 i~l~nF-ks~~~~~~~~----~~~~-~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
|++.|. |+|.+...+. .+.+ .+.+|+|||||||||++.+|...+
T Consensus 4 l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 455554 4565443221 2333 488999999999999999986543
No 145
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.84 E-value=0.00047 Score=70.94 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=22.2
Q ss_pred CCceEEecCCCCchhhHHHHHHHHh
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
..+.+|+||||||||||+.+|+..+
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4588999999999999999987765
No 146
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.83 E-value=0.00052 Score=67.80 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=18.1
Q ss_pred CCceEEecCCCCchhhHHHH
Q 001073 25 PYFNAITGLNGSGKSNILDS 44 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~a 44 (1163)
+.+.+|+|||||||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 35889999999999999995
No 147
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.83 E-value=0.0003 Score=74.73 Aligned_cols=25 Identities=40% Similarity=0.476 Sum_probs=21.8
Q ss_pred CceEEecCCCCchhhHHHHHHHHhC
Q 001073 26 YFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
.+.+|+|||||||||++.+|...+-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4789999999999999999976654
No 148
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.82 E-value=0.00051 Score=68.74 Aligned_cols=33 Identities=18% Similarity=0.116 Sum_probs=24.8
Q ss_pred CccccCCCCCceEEecCCCCchhhHHHHHHHHh
Q 001073 17 RTVVPGFDPYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 17 ~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
+.-+++|.+.+.+|+||+|||||||+.+|.-.+
T Consensus 11 ~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 11 RENLYFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp -----CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred cccCCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 344567888899999999999999999987543
No 149
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.81 E-value=0.00039 Score=72.23 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=20.6
Q ss_pred CceEEecCCCCchhhHHHHHHHHh
Q 001073 26 YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.+.+|+|||||||||++.+|+..+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 477999999999999999986543
No 150
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.81 E-value=0.00053 Score=72.41 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=23.7
Q ss_pred CCCC-ceEEecCCCCchhhHHHHHHHHhC
Q 001073 23 FDPY-FNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 23 ~~~~-~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
+.+| +.+|+|||||||||++..|.-.+|
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4444 679999999999999999988886
No 151
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.79 E-value=0.00047 Score=72.71 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=21.7
Q ss_pred CCCC-ceEEecCCCCchhhHHHHHHHH
Q 001073 23 FDPY-FNAITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 23 ~~~~-~~~ivG~NGsGKS~i~~ai~~~ 48 (1163)
+.+| +.+|+|||||||||++.+|+..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3344 8899999999999999998754
No 152
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.78 E-value=8.3e-05 Score=83.83 Aligned_cols=73 Identities=10% Similarity=0.106 Sum_probs=54.0
Q ss_pred cChH--HHHHHHHHHHHHHhcc------CCCCEEEeecCccCCCHHhHHHHHHHHhhhC---------C-CCeEEEEEeC
Q 001073 1070 LSGG--QRSLLALSLILALLLF------KPAPLYILDEVDAALDLSHTQNIGRMIKTHF---------P-HSQFIVVSLK 1131 (1163)
Q Consensus 1070 lSgG--ek~~~~ia~~lal~~~------~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~---------~-~~q~i~it~~ 1131 (1163)
|||| ++++++||.+|+-+.. +.|++++||||+++||+.++..+.++|.... + ...|++.||.
T Consensus 155 lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~ 234 (413)
T 1tq4_A 155 ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKN 234 (413)
T ss_dssp EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTC
T ss_pred eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCc
Confidence 9999 9999999998875211 2568889999999999999998888876642 1 2446677886
Q ss_pred cc---hhhhcccee
Q 001073 1132 EG---MFNNANVLF 1142 (1163)
Q Consensus 1132 ~~---~~~~a~~~~ 1142 (1163)
.. +=..+|+++
T Consensus 235 l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 235 VCHYDFPVLMDKLI 248 (413)
T ss_dssp TTSTTHHHHHHHHH
T ss_pred CCccCHHHHHHHHH
Confidence 44 444466653
No 153
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.78 E-value=0.00042 Score=72.79 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=22.4
Q ss_pred CCCC-ceEEecCCCCchhhHHHHHHHHh
Q 001073 23 FDPY-FNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 23 ~~~~-~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
+.+| +.+|+|||||||||++.+|...+
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3444 88999999999999999986554
No 154
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.76 E-value=0.00044 Score=72.67 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=21.0
Q ss_pred CceEEecCCCCchhhHHHHHHHHh
Q 001073 26 YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.+.+|+|||||||||++.+|+..+
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999986654
No 155
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.76 E-value=0.0006 Score=69.21 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=21.1
Q ss_pred CCceEEecCCCCchhhHHHHHHHHh
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
+.+.+|||||||||||++..|.-.+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999986544
No 156
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.76 E-value=0.00033 Score=78.07 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.4
Q ss_pred CceEEecCCCCchhhHHHHHHHH
Q 001073 26 YFNAITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~ 48 (1163)
.+.+|+|||||||||+|.+|...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCcHHHHHHHHHHcC
Confidence 48899999999999999998644
No 157
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.72 E-value=0.00048 Score=72.62 Aligned_cols=24 Identities=38% Similarity=0.474 Sum_probs=21.0
Q ss_pred CceEEecCCCCchhhHHHHHHHHh
Q 001073 26 YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.+.+|+|||||||||++.+|+..+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999986554
No 158
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.71 E-value=0.00065 Score=69.53 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=21.8
Q ss_pred CCceEEecCCCCchhhHHHHHHHHh
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
+.+.+|+|||||||||++..|+-.+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3588999999999999999997664
No 159
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.71 E-value=0.00051 Score=72.83 Aligned_cols=27 Identities=30% Similarity=0.308 Sum_probs=22.2
Q ss_pred CCCC-ceEEecCCCCchhhHHHHHHHHh
Q 001073 23 FDPY-FNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 23 ~~~~-~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
+.+| +.+|+|||||||||++.+|+..+
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3344 78999999999999999987554
No 160
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.68 E-value=0.00067 Score=71.93 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=21.7
Q ss_pred CCceEEecCCCCchhhHHHHHHHHh
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.++.+|+|||||||||++.+|.-.+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhC
Confidence 4588999999999999999986654
No 161
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.67 E-value=0.00031 Score=77.41 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.0
Q ss_pred CceEEecCCCCchhhHHHHHHHHh
Q 001073 26 YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.+.+|+|||||||||+|.+|...+
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 488999999999999999986554
No 162
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.67 E-value=0.00068 Score=69.52 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=23.0
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
+.+.+|+|||||||||++.+|.-.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45789999999999999999988774
No 163
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.65 E-value=0.00045 Score=73.19 Aligned_cols=27 Identities=37% Similarity=0.438 Sum_probs=22.5
Q ss_pred CCCCceEEecCCCCchhhHHHHHHHHh
Q 001073 23 FDPYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 23 ~~~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
+...+.+|+|||||||||++.+|+..+
T Consensus 28 i~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 28 VNGEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp ECSSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred ECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 343489999999999999999986655
No 164
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.65 E-value=0.0044 Score=70.96 Aligned_cols=86 Identities=17% Similarity=0.212 Sum_probs=66.7
Q ss_pred ccccccChHHHHHHHHHHHHHHh---cc----------CCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeC
Q 001073 1065 QSLSELSGGQRSLLALSLILALL---LF----------KPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLK 1131 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~---~~----------~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~ 1131 (1163)
+..+.+||||++..-+|++-|+. .. .+..|++|||. +-||+.+.+..+++++.+ +-|.||+|+.
T Consensus 375 ~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQliiatP~ 451 (483)
T 3euj_A 375 AESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLIAAPE 451 (483)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred cccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEEECcc
Confidence 35889999999976666655542 21 25679999999 999999999999999864 6899999998
Q ss_pred cchhhhccceeeeeee--CCceEEE
Q 001073 1132 EGMFNNANVLFRTKFV--DGVSTVQ 1154 (1163)
Q Consensus 1132 ~~~~~~a~~~~gv~~~--~g~S~v~ 1154 (1163)
.+..+.|..|-|... +|.-+|-
T Consensus 452 -~i~p~v~~~~~~~r~~~~~~~~~~ 475 (483)
T 3euj_A 452 -NISPERGTTYKLVRKILANQEYVH 475 (483)
T ss_dssp -SCCCSSSEEEECCEEEETTEEEEC
T ss_pred -hhhhccCceEEEEEeecCCceEEE
Confidence 667778888877762 5655553
No 165
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.62 E-value=0.00077 Score=74.20 Aligned_cols=62 Identities=13% Similarity=-0.025 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCC-CeEEEEEeCcchhhhccceeee
Q 001073 1072 GGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPH-SQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1072 gGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~-~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
||++++.+|+.+|. ..||+++||||++. .+..+|.....+ ..+|++||+......||+++-.
T Consensus 225 gg~~~r~~la~aL~----~~p~ilildE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l 287 (330)
T 2pt7_A 225 GNITSADCLKSCLR----MRPDRIILGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANM 287 (330)
T ss_dssp TTBCHHHHHHHHTT----SCCSEEEECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHH
T ss_pred CChhHHHHHHHHhh----hCCCEEEEcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheeh
Confidence 89999999998775 57899999999982 234556555444 4699999999999999988643
No 166
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.61 E-value=0.00075 Score=69.47 Aligned_cols=26 Identities=31% Similarity=0.598 Sum_probs=23.0
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
+.+.+|+|||||||||++..|.-.++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34789999999999999999988776
No 167
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.60 E-value=0.0011 Score=80.91 Aligned_cols=67 Identities=16% Similarity=0.112 Sum_probs=54.7
Q ss_pred cccChHHHHHHHHHHHHHHhccCCCCEEEeecC---ccCCCHHhH-HHHHHHHhhhCCCCeEEEEEeCcchhhhc
Q 001073 1068 SELSGGQRSLLALSLILALLLFKPAPLYILDEV---DAALDLSHT-QNIGRMIKTHFPHSQFIVVSLKEGMFNNA 1138 (1163)
Q Consensus 1068 ~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~---~~~lD~~~~-~~~~~~l~~~~~~~q~i~it~~~~~~~~a 1138 (1163)
..+|+|++.++.++.++.. ..+|++++|||| |++||+... ..+.++|.. .+..+|++||..++...|
T Consensus 634 ~g~S~~~~e~~~la~il~~--a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 634 GGKSTFMVEMEEVALILKE--ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp -CCSHHHHHHHHHHHHHHH--CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred hcccHHHHHHHHHHHHHHh--ccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 4579999999999887743 578899999999 999998775 467787766 578899999998887665
No 168
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.55 E-value=0.00077 Score=75.82 Aligned_cols=45 Identities=24% Similarity=0.357 Sum_probs=28.7
Q ss_pred eEEEecCccccCCCc---cccCCCCCc---eEEecCCCCchhhHHHHHHHH
Q 001073 4 KEICLEGFKSYASRT---VVPGFDPYF---NAITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 4 ~~i~l~nFks~~~~~---~~~~~~~~~---~~ivG~NGsGKS~i~~ai~~~ 48 (1163)
..+.+.|-++|++.. +-..+.+|. .+||||||||||||+.+|+..
T Consensus 15 ~~l~~~~~~~y~~~~L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 15 RTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp --CCCCCCC-CC--CHHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred ceEEEeeEEEECCeecCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 346677777776532 111455665 699999999999999998643
No 169
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.54 E-value=0.00069 Score=74.60 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=20.8
Q ss_pred CceEEecCCCCchhhHHHHHHHHh
Q 001073 26 YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.+.+|+|||||||||++.+|+..+
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 488999999999999999887543
No 170
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.48 E-value=0.001 Score=69.58 Aligned_cols=29 Identities=21% Similarity=0.477 Sum_probs=23.4
Q ss_pred CCCC-CceEEecCCCCchhhHHHHHHHHhC
Q 001073 22 GFDP-YFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 22 ~~~~-~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
.+.+ .+++|+|||||||||++..|+..+-
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3444 4889999999999999999987543
No 171
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.45 E-value=0.7 Score=64.57 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.7
Q ss_pred eEEecCCCCchhhHHHHHHHHhC
Q 001073 28 NAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 28 ~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
.+||||.|||||+++..+.-+|+
T Consensus 909 vmlVGp~gsGKTt~~~~L~~al~ 931 (3245)
T 3vkg_A 909 VMMVGPSGGGKTTSWEVYLEAIE 931 (3245)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999988875
No 172
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.45 E-value=0.0014 Score=65.64 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.4
Q ss_pred ceEEecCCCCchhhHHHHHHHHh
Q 001073 27 FNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
+.+|+|||||||||++..|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 67899999999999999988776
No 173
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.44 E-value=0.0016 Score=80.12 Aligned_cols=73 Identities=7% Similarity=-0.059 Sum_probs=51.3
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHH-HHHHhhhC--CCCeEEEEEeCcchhhhccceee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNI-GRMIKTHF--PHSQFIVVSLKEGMFNNANVLFR 1143 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~-~~~l~~~~--~~~q~i~it~~~~~~~~a~~~~g 1143 (1163)
.+.+|+|++.+..+ +. ...++++++||||++|+|+.....+ ..++..+. .+..+|++||..++...||++.+
T Consensus 667 ~stf~~e~~~~~~i---l~--~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~ 741 (800)
T 1wb9_A 667 RSTFMVEMTETANI---LH--NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEG 741 (800)
T ss_dssp ---CHHHHHHHHHH---HH--HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTT
T ss_pred hhhhhHHHHHHHHH---HH--hccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhc
Confidence 45567777654332 22 2478899999999999998766554 55665542 37889999999999889998754
Q ss_pred e
Q 001073 1144 T 1144 (1163)
Q Consensus 1144 v 1144 (1163)
|
T Consensus 742 v 742 (800)
T 1wb9_A 742 V 742 (800)
T ss_dssp E
T ss_pred e
Confidence 4
No 174
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.43 E-value=0.56 Score=65.55 Aligned_cols=90 Identities=11% Similarity=0.197 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 001073 395 CLEDQLADAKVTVGSAETELKQLKTKISHCEKELKEKTHQLMSKREEAVSVESELNARRKDVENVKL---ALESDRASEM 471 (1163)
Q Consensus 395 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---~l~~~~~~l~ 471 (1163)
.++.++..++.++...+.++...+.++..++.++..++.+.+.+..+.+.++.+.+..+.++..... .|..+.....
T Consensus 2011 Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~ 2090 (3245)
T 3vkg_A 2011 PLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWE 2090 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHH
Confidence 4555666666666666666666666666666666666666666666666666666666665554444 2334444455
Q ss_pred HHHHHHHHHHHHH
Q 001073 472 AMAQKLKDEIRDL 484 (1163)
Q Consensus 472 ~~~~~~~~~l~~l 484 (1163)
.....+..++..+
T Consensus 2091 ~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2091 QQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 5555555444443
No 175
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.43 E-value=0.0011 Score=73.17 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.4
Q ss_pred CceEEecCCCCchhhHHHHHHHH
Q 001073 26 YFNAITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~ 48 (1163)
.+.+|+|||||||||+|.+|...
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHCC
Confidence 48899999999999999998644
No 176
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.43 E-value=0.0011 Score=70.59 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.6
Q ss_pred eEEecCCCCchhhHHHHHHHHhC
Q 001073 28 NAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 28 ~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
.+|||||||||||++.+|+..+-
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 48999999999999999987764
No 177
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.43 E-value=0.0013 Score=70.77 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.7
Q ss_pred CceEEecCCCCchhhHHHHHHHHh
Q 001073 26 YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.+.+||||||||||||+.+|...+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 478999999999999999998665
No 178
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.40 E-value=0.0015 Score=66.54 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=23.7
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhCC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+.+.+|+|||||||||++.+|.-.+|.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 457899999999999999999877774
No 179
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.38 E-value=0.0013 Score=72.96 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=22.7
Q ss_pred CCCceEEecCCCCchhhHHHHHHHHh
Q 001073 24 DPYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 24 ~~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
..|+.+|+|||||||||++.+|...+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 35789999999999999999987655
No 180
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.38 E-value=0.0013 Score=71.70 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=23.1
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
+.+.+|+|||||||||++..|+..+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcc
Confidence 45789999999999999999988774
No 181
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.37 E-value=0.0047 Score=67.24 Aligned_cols=74 Identities=15% Similarity=0.132 Sum_probs=48.5
Q ss_pred cccChHH-HHHHHHHHHHHHhccCCCCEEEeecCcc---C---CCH-HhHHHHHHHHhhhC--CCCeEEEEEeCc-----
Q 001073 1068 SELSGGQ-RSLLALSLILALLLFKPAPLYILDEVDA---A---LDL-SHTQNIGRMIKTHF--PHSQFIVVSLKE----- 1132 (1163)
Q Consensus 1068 ~~lSgGe-k~~~~ia~~lal~~~~~~p~~~lDE~~~---~---lD~-~~~~~~~~~l~~~~--~~~q~i~it~~~----- 1132 (1163)
..+|.|+ ++++. +++++ .+|+++|+|||++ + +|+ .....+...|+.++ .+..+|++||..
T Consensus 128 ~~~~~~~l~~~~~-a~~~~----~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~ 202 (296)
T 1cr0_A 128 AEAETDRLLAKLA-YMRSG----LGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKG 202 (296)
T ss_dssp CSCCHHHHHHHHH-HHHHT----TCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----
T ss_pred CCCCHHHHHHHHH-HHHHh----cCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccc
Confidence 4566666 44444 44333 5789999999999 4 454 55667878787764 378999999984
Q ss_pred ------------------chhhhccceeeeee
Q 001073 1133 ------------------GMFNNANVLFRTKF 1146 (1163)
Q Consensus 1133 ------------------~~~~~a~~~~gv~~ 1146 (1163)
.+...||+++-+..
T Consensus 203 ~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~ 234 (296)
T 1cr0_A 203 KAHEEGRPVSITDLRGSGALRQLSDTIIALER 234 (296)
T ss_dssp ------------CCC---CHHHHCSEEEEEEE
T ss_pred cccccCCCCCHHHhcccHHhHhhCcEEEEEec
Confidence 34557998876544
No 182
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.34 E-value=0.0014 Score=69.55 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=15.0
Q ss_pred CceEEecCCCCchhhHHHHHH
Q 001073 26 YFNAITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~ 46 (1163)
.+.+|+|||||||||++.+|+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 366777777777777777765
No 183
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.34 E-value=0.0013 Score=68.74 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=15.5
Q ss_pred CceEEecCCCCchhhHHHHHH-HHh
Q 001073 26 YFNAITGLNGSGKSNILDSIC-FVL 49 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~-~~l 49 (1163)
.+.+|+|||||||||++..|+ -.+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999997 554
No 184
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.32 E-value=0.0011 Score=73.11 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.3
Q ss_pred CceEEecCCCCchhhHHHHHHHH
Q 001073 26 YFNAITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~ 48 (1163)
.+.+|+|||||||||+|.+|...
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCccHHHHHHHHHcC
Confidence 48899999999999999998643
No 185
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.31 E-value=0.0021 Score=81.14 Aligned_cols=71 Identities=11% Similarity=0.077 Sum_probs=51.1
Q ss_pred cccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhH-HHHHHHHhhhC-C-CCeEEEEEeCcchhhh-ccce
Q 001073 1066 SLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHT-QNIGRMIKTHF-P-HSQFIVVSLKEGMFNN-ANVL 1141 (1163)
Q Consensus 1066 ~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~-~~~~~~l~~~~-~-~~q~i~it~~~~~~~~-a~~~ 1141 (1163)
.++.+|+|.+. +++++.+| .+++++|||||++|+|+... ..++.+|..+. . +..+|++||..++... +|+.
T Consensus 848 ~~stf~~em~~-~a~al~la----~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~ 922 (1022)
T 2o8b_B 848 GESTFFVELSE-TASILMHA----TAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNV 922 (1022)
T ss_dssp --CHHHHHHHH-HHHHHHHC----CTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCS
T ss_pred chhhhHHHHHH-HHHHHHhC----CCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcc
Confidence 34677887765 55555444 78899999999999999874 44566776653 3 7889999999887654 6654
No 186
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.29 E-value=0.0093 Score=62.21 Aligned_cols=75 Identities=12% Similarity=0.025 Sum_probs=54.5
Q ss_pred ccChHHHHHHHHHHHHHHhccCCCC--EEEeecCccCC--CHHhHHHHHHHHhhhC--CCCeEEEEEeCc--------c-
Q 001073 1069 ELSGGQRSLLALSLILALLLFKPAP--LYILDEVDAAL--DLSHTQNIGRMIKTHF--PHSQFIVVSLKE--------G- 1133 (1163)
Q Consensus 1069 ~lSgGek~~~~ia~~lal~~~~~~p--~~~lDE~~~~l--D~~~~~~~~~~l~~~~--~~~q~i~it~~~--------~- 1133 (1163)
..|+|+......+.+.. ..++ ++|+|||++++ |+.....+...|...+ .+..+|++||.. .
T Consensus 103 ~~~~~~~~~~~~~~~~~----~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~ 178 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQK----LGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFG 178 (235)
T ss_dssp SCCHHHHHHHHHHHHHH----HCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------C
T ss_pred CCCHHHHHHHHHHHHHh----hCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccc
Confidence 34888876665555443 3567 99999999888 9988888888887653 467899999987 2
Q ss_pred hhhhccceeeeeee
Q 001073 1134 MFNNANVLFRTKFV 1147 (1163)
Q Consensus 1134 ~~~~a~~~~gv~~~ 1147 (1163)
+...||+++-+...
T Consensus 179 ~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 179 VEHVADGIIRFRRM 192 (235)
T ss_dssp HHHHCSEEEEEEEE
T ss_pred hheeeeEEEEEEEE
Confidence 55679998776653
No 187
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.27 E-value=0.0018 Score=68.38 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=24.5
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhCCC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLGIT 52 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg~~ 52 (1163)
|.+.+|+|||||||||++.+|.--||..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 5689999999999999999998777753
No 188
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.26 E-value=0.0014 Score=66.09 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=20.8
Q ss_pred CceEEecCCCCchhhHHHHHHHHh
Q 001073 26 YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.+.+|+|||||||||++.+|.-.+
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhcc
Confidence 478999999999999999996544
No 189
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.25 E-value=0.011 Score=61.10 Aligned_cols=80 Identities=10% Similarity=-0.019 Sum_probs=53.2
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHh--------HHHHHHHHhhhCC--CCeEEEEEeCcc---
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSH--------TQNIGRMIKTHFP--HSQFIVVSLKEG--- 1133 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~--------~~~~~~~l~~~~~--~~q~i~it~~~~--- 1133 (1163)
+..+|+|+.....++.+.++..- +++++|+|||++++|+.. ...+...|..+++ +..+|+++|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~-~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~ 160 (220)
T 2cvh_A 82 LFTPSDFKEQRRVIGSLKKTVDS-NFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSR 160 (220)
T ss_dssp EECCTTTSHHHHHHHHHHHHCCT-TEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCT
T ss_pred EEecCCHHHHHHHHHHHHHHhhc-CCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCC
Confidence 44567777655555555555322 579999999999999732 2334444555432 678999999754
Q ss_pred -----------hhhhccceeeeeee
Q 001073 1134 -----------MFNNANVLFRTKFV 1147 (1163)
Q Consensus 1134 -----------~~~~a~~~~gv~~~ 1147 (1163)
....||.++-+...
T Consensus 161 ~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 161 TEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred CCccccCCCcceeecCcEEEEEEEe
Confidence 34579998887774
No 190
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.23 E-value=0.0011 Score=71.66 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=20.3
Q ss_pred CceEEecCCCCchhhHHHHHHHHh
Q 001073 26 YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.+.+|||||||||||++.+|...+
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 477999999999999998885443
No 191
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.23 E-value=0.002 Score=69.79 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=23.7
Q ss_pred CCCceEEecCCCCchhhHHHHHHHHhC
Q 001073 24 DPYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 24 ~~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
.+.+.+|||||||||||++..|...+-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 357899999999999999999987764
No 192
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.21 E-value=0.0003 Score=75.04 Aligned_cols=61 Identities=11% Similarity=0.102 Sum_probs=46.1
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhh
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFN 1136 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~ 1136 (1163)
..+..|||||++++++|++++ .++++|||+.|||+.... ++..|. ....+|+|.|+..++.
T Consensus 94 ~~~~~LS~G~~qrv~iaRal~-------~lllldep~~gL~~lD~~-~l~~L~---~~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 94 FLKEEVNIARKKRIPDTRVHC-------CLYFISPTGHSLRPLDLE-FMKHLS---KVVNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHSCTTCCSSCCCCSCCE-------EEEEECCCSSSCCHHHHH-HHHHHH---TTSEEEEEETTGGGSC
T ss_pred hhHHhcCcccchhhhhheeee-------eeEEEecCCCcCCHHHHH-HHHHHH---hcCcEEEEEeccccCC
Confidence 457899999999999987654 499999999999997732 333333 2378888988876554
No 193
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.20 E-value=0.0011 Score=73.33 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.5
Q ss_pred CceEEecCCCCchhhHHHHHHHH
Q 001073 26 YFNAITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~ 48 (1163)
.+.+|+|||||||||+|.+|...
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48899999999999999998644
No 194
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.16 E-value=0.002 Score=69.83 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=19.2
Q ss_pred CCceEEecCCCCchhhHHHHHHHHh
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
+.+.+|||||||||||++..|...+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3477888888888888888877665
No 195
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.13 E-value=0.0023 Score=64.33 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=21.1
Q ss_pred CceEEecCCCCchhhHHHHHHHHhC
Q 001073 26 YFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
.+.+|+|||||||||++.+|.-.++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcccC
Confidence 3678999999999999999975443
No 196
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.11 E-value=0.92 Score=42.53 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 415 KQLKTKISHCEKELKEKTHQLMSKREEAVSVESELNARRK 454 (1163)
Q Consensus 415 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (1163)
..+..++..|..++.........+..+...+...+..++.
T Consensus 93 ~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEK 132 (168)
T 3o0z_A 93 GDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEK 132 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444333333333
No 197
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.11 E-value=0.0019 Score=73.11 Aligned_cols=42 Identities=21% Similarity=0.467 Sum_probs=25.7
Q ss_pred EEecCc-cccCCCccccCCCCCceEEecCCCCchhhHHHHHHHH
Q 001073 6 ICLEGF-KSYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 6 i~l~nF-ks~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~ 48 (1163)
|.+.|. ++|.+..++.+++..+ +||||||||||||+.+|+..
T Consensus 12 l~~~~l~~~y~~~~vl~~vsf~I-~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 12 VGFANLPNQVYRKSVKRGFEFTL-MVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp ---CCCCCCTTTTTCC-CCCEEE-EEECCTTSSHHHHHHHHTTC
T ss_pred EEEEecceeECCEEEecCCCEEE-EEECCCCCcHHHHHHHHhCC
Confidence 334443 3454444444444333 99999999999999998643
No 198
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.11 E-value=0.0027 Score=62.73 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=23.4
Q ss_pred CceEEecCCCCchhhHHHHHHHHhCC
Q 001073 26 YFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
.+.+|+|||||||||+..+|.-.||.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46799999999999999999988874
No 199
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.10 E-value=0.0022 Score=72.66 Aligned_cols=26 Identities=35% Similarity=0.248 Sum_probs=23.0
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
.++.+|+|||||||||+|.+|.-.+-
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 46889999999999999999977664
No 200
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.07 E-value=0.0024 Score=65.36 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=22.2
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
+.+.+|+|||||||||++.+|.-.+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45889999999999999999976553
No 201
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.01 E-value=0.0032 Score=60.29 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.0
Q ss_pred CCceEEecCCCCchhhHHHHHHHHh
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
....+|+||||||||+++.+|+..+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567999999999999999998765
No 202
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.98 E-value=0.0026 Score=69.49 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=23.3
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
+.+.+|+|||||||||++..|...++
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34889999999999999999988776
No 203
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.97 E-value=0.0028 Score=68.75 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=23.6
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
|-+.+|+|||||||||++..|...|+
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45899999999999999999988876
No 204
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.96 E-value=0.0018 Score=70.37 Aligned_cols=33 Identities=27% Similarity=0.527 Sum_probs=18.6
Q ss_pred ccCCCccccCCCCCceEEecCCCCchhhHHHHHH
Q 001073 13 SYASRTVVPGFDPYFNAITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 13 s~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~ 46 (1163)
+|....++.+++..+ +||||||+|||||+..|.
T Consensus 7 ~~~~~~~l~~~~~~I-~lvG~nG~GKSTLl~~L~ 39 (301)
T 2qnr_A 7 QVHRKSVKKGFEFTL-MVVGESGLGKSTLINSLF 39 (301)
T ss_dssp -----------CEEE-EEEEETTSSHHHHHHHHH
T ss_pred eECCEEEEcCCCEEE-EEECCCCCCHHHHHHHHh
Confidence 455554444444334 899999999999999975
No 205
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.94 E-value=0.0024 Score=71.97 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.1
Q ss_pred CceEEecCCCCchhhHHHHHHHHh
Q 001073 26 YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
++.+|+|||||||||++.+|+..+
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 478999999999999999987544
No 206
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.93 E-value=0.0027 Score=70.98 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.6
Q ss_pred CceEEecCCCCchhhHHHHHHH
Q 001073 26 YFNAITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~ 47 (1163)
.+.+|+|||||||||+|.+|..
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 4789999999999999998853
No 207
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.93 E-value=0.003 Score=69.15 Aligned_cols=26 Identities=35% Similarity=0.622 Sum_probs=23.1
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
|.+.+|||||||||||++..|...+-
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56889999999999999999987763
No 208
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.93 E-value=0.0029 Score=70.92 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=21.7
Q ss_pred CCceEEecCCCCchhhHHHHHHHHh
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.++.+|+|||||||||++.+|.-.+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4578999999999999999987654
No 209
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.92 E-value=0.003 Score=69.79 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=20.1
Q ss_pred CCceEEecCCCCchhhHHHHHHHHh
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
+.+.+|||||||||||++..|...+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4577888888888888888887665
No 210
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.86 E-value=0.0034 Score=64.22 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.5
Q ss_pred CCceEEecCCCCchhhHHHHHHHHh
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
+.+.+|+|||||||||++..|.-.+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3478999999999999999987654
No 211
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.83 E-value=0.0036 Score=62.40 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=22.0
Q ss_pred CCceEEecCCCCchhhHHHHHHHHh
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
+...+|+|||||||||++.+|+..+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567999999999999999998776
No 212
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.82 E-value=0.0025 Score=69.42 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=23.8
Q ss_pred CCCCC-ceEEecCCCCchhhHHHHHHHHh
Q 001073 22 GFDPY-FNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 22 ~~~~~-~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.|.+| +++|+||||||||||+..|+..+
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 56665 89999999999999999987654
No 213
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.80 E-value=0.0044 Score=61.34 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=23.1
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhCC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+.+.+|+|||||||||+..+|.-.+|.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCc
Confidence 347799999999999999999877763
No 214
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.77 E-value=0.0035 Score=63.67 Aligned_cols=26 Identities=35% Similarity=0.379 Sum_probs=22.8
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
+.+.+|+|||||||||+..+|.-.|+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45779999999999999999987774
No 215
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.75 E-value=0.0039 Score=65.16 Aligned_cols=40 Identities=23% Similarity=0.212 Sum_probs=27.4
Q ss_pred cCccccCCCccccCCCCC-ceEEecCCCCchhhHHHHHHHHh
Q 001073 9 EGFKSYASRTVVPGFDPY-FNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 9 ~nFks~~~~~~~~~~~~~-~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.||..+..... +++.+| +.+|+|||||||||++..|+..+
T Consensus 7 tg~~~Ld~~~~-ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 7 TGILDFDKLIQ-GGIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp CSCHHHHGGGT-TSEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCchHHHHHhc-CCCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34555543221 134444 88999999999999999998554
No 216
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.75 E-value=0.0038 Score=71.17 Aligned_cols=25 Identities=24% Similarity=0.586 Sum_probs=22.4
Q ss_pred CCceEEecCCCCchhhHHHHHHHHh
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
+.+.+|||||||||||++..|...+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 4588999999999999999998766
No 217
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.69 E-value=0.01 Score=62.72 Aligned_cols=57 Identities=5% Similarity=-0.066 Sum_probs=42.3
Q ss_pred CCCCEEEeecCccCCC-----HHhHHHHHHHHhhhC-CCCeEEEEEeCcchh----------hhc-cceeeeee
Q 001073 1090 KPAPLYILDEVDAALD-----LSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF----------NNA-NVLFRTKF 1146 (1163)
Q Consensus 1090 ~~~p~~~lDE~~~~lD-----~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~----------~~a-~~~~gv~~ 1146 (1163)
..|+++++|||+++|| +..+..+..++..+. .+..+|++||..... ..| |+++-...
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 5779999999999997 455555777776653 478999999996653 567 99877665
No 218
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.68 E-value=0.0041 Score=69.42 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=20.8
Q ss_pred CceEEecCCCCchhhHHHHHHHHh
Q 001073 26 YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.+.+|+|||||||||++.+|...+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 578999999999999999986543
No 219
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.67 E-value=0.0051 Score=65.81 Aligned_cols=28 Identities=18% Similarity=0.250 Sum_probs=24.1
Q ss_pred CCCCceEEecCCCCchhhHHHHHHHHhCC
Q 001073 23 FDPYFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 23 ~~~~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+.+| .+|+||||||||+++.||...++.
T Consensus 43 ~~~G-vlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 43 TPAG-VLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp CCSE-EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred CCCe-EEEECCCCCcHHHHHHHHHHHcCC
Confidence 3456 899999999999999999988763
No 220
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.66 E-value=0.0034 Score=69.09 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.1
Q ss_pred CCceEEecCCCCchhhHHHHHHHHh
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.++.+|+|||||||||++.+|...+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3577999999999999999986543
No 221
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.63 E-value=0.0036 Score=65.20 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=19.8
Q ss_pred CCceEEecCCCCchhhHHHHHHH
Q 001073 25 PYFNAITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~ 47 (1163)
+.+.+|+|||||||||++..|.-
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34789999999999999998754
No 222
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.61 E-value=0.0055 Score=64.74 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=24.1
Q ss_pred CceEEecCCCCchhhHHHHHHHHhCCCc
Q 001073 26 YFNAITGLNGSGKSNILDSICFVLGITN 53 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~lg~~~ 53 (1163)
.+.+|+|||||||||++..|.--||...
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 3669999999999999999998888543
No 223
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.60 E-value=0.0048 Score=67.03 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.6
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
..+.+|+|||||||||++.+|. .+-
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 3577999999999999999998 543
No 224
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.56 E-value=0.014 Score=62.79 Aligned_cols=63 Identities=8% Similarity=-0.025 Sum_probs=44.7
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCcc--CCCHHhH---HHHHHHHhhhC--CCCeEEEEEeCcch
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDA--ALDLSHT---QNIGRMIKTHF--PHSQFIVVSLKEGM 1134 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~--~lD~~~~---~~~~~~l~~~~--~~~q~i~it~~~~~ 1134 (1163)
.++..||+|+.+++. .++ ..++++|+|||++ ++|+... ..+...|..+. .+..+|+|||....
T Consensus 114 ~~~~~ls~g~~~~i~---~l~----~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~ 183 (279)
T 1nlf_A 114 SLPNIMAPEWFDGLK---RAA----EGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKG 183 (279)
T ss_dssp SCCCTTSHHHHHHHH---HHH----TTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC---
T ss_pred CCcccCCHHHHHHHH---Hhc----CCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCc
Confidence 457789999976542 222 3679999999999 9997544 66667776653 37889999997654
No 225
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.54 E-value=0.0032 Score=61.67 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.7
Q ss_pred CceEEecCCCCchhhHHHHHHHHhC
Q 001073 26 YFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
.+.+||||+|||||||+..|.-.+-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3679999999999999999977663
No 226
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.47 E-value=0.0047 Score=74.09 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=21.4
Q ss_pred CceEEecCCCCchhhHHHHHHHHhC
Q 001073 26 YFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
.+.+|||||||||||++..|+..+-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3779999999999999999876553
No 227
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.38 E-value=0.0063 Score=66.94 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=21.1
Q ss_pred CCceEEecCCCCchhhHHHHHHHHh
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
..+.+|+||||+|||||+.+|...+
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCEEEEECCCCccHHHHHHHHhccc
Confidence 3578999999999999999987443
No 228
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.33 E-value=0.0066 Score=66.99 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=21.9
Q ss_pred CCceEEecCCCCchhhHHHHHHHHh
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
..+.+|+|||||||||++.+|...+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3578999999999999999998665
No 229
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.29 E-value=0.0065 Score=65.38 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=22.9
Q ss_pred CCCC-CceEEecCCCCchhhHHHHHHHHh
Q 001073 22 GFDP-YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 22 ~~~~-~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
+|.+ .+++|+||||||||||+..|+..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3444 488999999999999999987654
No 230
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.28 E-value=0.0061 Score=68.48 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=22.7
Q ss_pred CceEEecCCCCchhhHHHHHHHHhCC
Q 001073 26 YFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
...+||||||||||||+.+|...+..
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46699999999999999999887753
No 231
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.27 E-value=0.0068 Score=61.77 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=21.1
Q ss_pred ceEEecCCCCchhhHHHHHHHHhCC
Q 001073 27 FNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
.-+|+|||||||||+...|.- +|.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~ 26 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGA 26 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTC
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCC
Confidence 358999999999999999988 774
No 232
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.25 E-value=0.0071 Score=69.45 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.0
Q ss_pred CceEEecCCCCchhhHHHHHHHHh
Q 001073 26 YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.+.+|+|||||||||++..|+..+
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 489999999999999999986543
No 233
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.22 E-value=0.0076 Score=61.19 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.2
Q ss_pred CCceEEecCCCCchhhHHHHHHHHh
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
+.+.+|+|||||||||++.+|.-.|
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998765
No 234
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.15 E-value=0.0094 Score=63.12 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=22.9
Q ss_pred CCCceEEecCCCCchhhHHHHHHHHhC
Q 001073 24 DPYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 24 ~~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
.+| .+|+||||||||+++.+|+..++
T Consensus 49 ~~g-~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 49 PKG-VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CSE-EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCe-EEEECCCCCCHHHHHHHHHHHhC
Confidence 345 79999999999999999998776
No 235
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.09 E-value=1.9 Score=39.28 Aligned_cols=58 Identities=21% Similarity=0.305 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001073 326 SEKENAEKIVRNIEDLKQAVEEKVSAVRKCEEGAADLKKKFEELSKGLEENEKEYQGV 383 (1163)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l 383 (1163)
...+++..+......+...+..+...++........+...-..++.++..++..+..+
T Consensus 66 e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 66 DAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555555555555555555555555555555555444
No 236
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.09 E-value=0.0077 Score=61.47 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=20.8
Q ss_pred ceEEecCCCCchhhHHHHHHHHhCC
Q 001073 27 FNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+-+|+|||||||||+...|.- ||.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~ 27 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGV 27 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTC
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCC
Confidence 468999999999999999965 764
No 237
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.05 E-value=0.0095 Score=68.03 Aligned_cols=29 Identities=17% Similarity=0.051 Sum_probs=23.9
Q ss_pred CCCCC-ceEEecCCCCchhhHHHHHHHHhC
Q 001073 22 GFDPY-FNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 22 ~~~~~-~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
++.+| +.+|+||||||||||+..|...+.
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 45554 789999999999999999977653
No 238
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.01 E-value=0.011 Score=61.39 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.9
Q ss_pred CceEEecCCCCchhhHHHHHHHHhCC
Q 001073 26 YFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
.+-+|+||+||||||+...|.-.+|.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~ 31 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQW 31 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36799999999999999999877775
No 239
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.01 E-value=0.012 Score=59.59 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=23.1
Q ss_pred ceEEecCCCCchhhHHHHHHHHhCCC
Q 001073 27 FNAITGLNGSGKSNILDSICFVLGIT 52 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~~lg~~ 52 (1163)
+-+|+||+||||||+..+|.-.||..
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l~~~ 52 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKLNVP 52 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 66999999999999999999888753
No 240
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.00 E-value=0.0076 Score=72.49 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=20.8
Q ss_pred CceEEecCCCCchhhHHHHHHHHh
Q 001073 26 YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.+.+|||||||||||++.+|+..+
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 477999999999999999986554
No 241
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.99 E-value=0.011 Score=60.85 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=21.9
Q ss_pred CCCC-CceEEecCCCCchhhHHHHHHH
Q 001073 22 GFDP-YFNAITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 22 ~~~~-~~~~ivG~NGsGKS~i~~ai~~ 47 (1163)
+|.+ .+++|+|||||||||++..|+.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3444 4889999999999999999876
No 242
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.97 E-value=0.013 Score=64.89 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=24.1
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhCC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+...+|+|||||||||++.+|+..+|.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~ 77 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQT 77 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 357899999999999999999998864
No 243
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.96 E-value=0.00031 Score=72.63 Aligned_cols=71 Identities=8% Similarity=0.096 Sum_probs=52.2
Q ss_pred cccChHHHHHHHH-----HHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhh------C--CCCeEEEEEeCcc-
Q 001073 1068 SELSGGQRSLLAL-----SLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH------F--PHSQFIVVSLKEG- 1133 (1163)
Q Consensus 1068 ~~lSgGek~~~~i-----a~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~------~--~~~q~i~it~~~~- 1133 (1163)
..|||||+++++| +++| +.+||+.+||||++++|......+...|... + ....+|+++|+.+
T Consensus 121 ~~lsggq~qR~~i~~~~~~~~l----l~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~e 196 (218)
T 1z6g_A 121 MNINGVKQLKKSTHIKNALYIF----IKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTL 196 (218)
T ss_dssp ECHHHHHHHTTCSSCCSCEEEE----EECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHH
T ss_pred ecHHHHHHHHHHhcCCCcEEEE----EeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHH
Confidence 4679999999987 4333 3688999999999999987776666655432 1 4567889999754
Q ss_pred hhhhcccee
Q 001073 1134 MFNNANVLF 1142 (1163)
Q Consensus 1134 ~~~~a~~~~ 1142 (1163)
.+..++.++
T Consensus 197 a~~~~~~ii 205 (218)
T 1z6g_A 197 TYQQLKNYL 205 (218)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566666654
No 244
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.90 E-value=0.0081 Score=72.02 Aligned_cols=24 Identities=38% Similarity=0.375 Sum_probs=20.7
Q ss_pred CceEEecCCCCchhhHHHHHHHHh
Q 001073 26 YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.+.+|||||||||||++..|+..+
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 377999999999999999986554
No 245
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.90 E-value=0.0092 Score=60.01 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.1
Q ss_pred eEEecCCCCchhhHHHHHHHHh
Q 001073 28 NAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 28 ~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.+||||||||||||+..++...
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 3999999999999999987543
No 246
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=94.90 E-value=1.5 Score=38.01 Aligned_cols=9 Identities=33% Similarity=0.497 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 001073 898 LENEVKRME 906 (1163)
Q Consensus 898 l~~~~~~~~ 906 (1163)
.+.++..+.
T Consensus 84 aE~ev~~L~ 92 (101)
T 3u1c_A 84 AESEVASLN 92 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 247
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.90 E-value=0.01 Score=65.41 Aligned_cols=28 Identities=29% Similarity=0.224 Sum_probs=23.0
Q ss_pred CCCC-CceEEecCCCCchhhHHHHHHHHh
Q 001073 22 GFDP-YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 22 ~~~~-~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
++.+ ...+|+|||||||||++..|...+
T Consensus 67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 67 TCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444 477999999999999999987764
No 248
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.89 E-value=0.012 Score=63.22 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=22.9
Q ss_pred CCCceEEecCCCCchhhHHHHHHHHhC
Q 001073 24 DPYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 24 ~~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
.+| .+|+|||||||||++.+|+..++
T Consensus 73 ~~g-vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 73 PKG-VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCE-EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCe-EEEECCCcChHHHHHHHHHHHcC
Confidence 345 79999999999999999998875
No 249
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.89 E-value=0.0092 Score=69.55 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=20.9
Q ss_pred CceEEecCCCCchhhHHHHHHHHh
Q 001073 26 YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
...+|+|||||||||++.||+..+
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 457999999999999999987655
No 250
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=94.88 E-value=0.0093 Score=71.51 Aligned_cols=27 Identities=30% Similarity=0.319 Sum_probs=22.5
Q ss_pred CCCCceEEecCCCCchhhHHHHHHHHh
Q 001073 23 FDPYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 23 ~~~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
|+-...+|||||||||||++.+|...+
T Consensus 43 l~lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 43 LALPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred ccCCeEEEECCCCChHHHHHHHHhCCC
Confidence 444568999999999999999997654
No 251
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.87 E-value=0.011 Score=72.66 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.3
Q ss_pred CCceEEecCCCCchhhHHHHHHHH
Q 001073 25 PYFNAITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~ 48 (1163)
..+.+|+|||||||||+|..|...
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 358899999999999999998764
No 252
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.84 E-value=0.71 Score=58.59 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=14.3
Q ss_pred EEecCCCCchhhHHHHH
Q 001073 29 AITGLNGSGKSNILDSI 45 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai 45 (1163)
.|.|.+|||||.--.-|
T Consensus 160 iisGESGAGKTe~~K~i 176 (1080)
T 2dfs_A 160 IVSGESGAGKTVSAKYA 176 (1080)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEcCCCCCCccchHHHH
Confidence 77899999999876665
No 253
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.79 E-value=0.012 Score=72.02 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=21.9
Q ss_pred CCceEEecCCCCchhhHHHHHHHHh
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
..+.+|+|||||||||+|..|....
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 5688999999999999999997653
No 254
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.78 E-value=0.0096 Score=71.50 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=20.3
Q ss_pred CceEEecCCCCchhhHHHHHHHHh
Q 001073 26 YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.+.+|||||||||||++.+|...+
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Confidence 467999999999999999885544
No 255
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.76 E-value=0.015 Score=58.98 Aligned_cols=27 Identities=33% Similarity=0.485 Sum_probs=23.8
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhCC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+.+-+|+||+||||||+...|.-.||.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 347899999999999999999888874
No 256
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.76 E-value=0.0097 Score=65.20 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=19.1
Q ss_pred ceEEecCCCCchhhHHHHHHH
Q 001073 27 FNAITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~ 47 (1163)
+++|+|||||||||++..|.-
T Consensus 6 v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHh
Confidence 789999999999999998754
No 257
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.76 E-value=0.011 Score=64.11 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=21.1
Q ss_pred CCceEEecCCCCchhhHHHHHHHHh
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
..+.+|+|||||||||++.+|...+
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 3577999999999999999986443
No 258
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.74 E-value=0.011 Score=59.79 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=18.8
Q ss_pred eEEecCCCCchhhHHHHHHHH
Q 001073 28 NAITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 28 ~~ivG~NGsGKS~i~~ai~~~ 48 (1163)
.+|+||||+|||||+.+++..
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 489999999999999998754
No 259
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.73 E-value=0.00099 Score=71.70 Aligned_cols=56 Identities=13% Similarity=0.123 Sum_probs=43.1
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeeeee
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKF 1146 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv~~ 1146 (1163)
...||||||+| |++| +.+||++| |++||+..+..+.. +||++.++..||++ .|
T Consensus 198 g~~LSgGqkQR---ARAl----l~~p~iLl----Ts~LD~~~~~~i~~-------------ltH~~~~~~~aD~i---vl 250 (305)
T 2v9p_A 198 GYPVSIDRKHK---AAVQ----IKAPPLLV----TSNIDVQAEDRYLY-------------LHSRVQTFRFEQPC---TD 250 (305)
T ss_dssp TCCEECCCSSC---CCCE----ECCCCEEE----EESSCSTTCGGGGG-------------GTTTEEEEECCCCC---CC
T ss_pred ccCcCHHHHHH---HHHH----hCCCCEEE----ECCCCHHHHHHHHH-------------HhCCHHHHHhCCEE---EE
Confidence 67899999999 4433 47889999 99999988777641 29999999999998 24
Q ss_pred eCC
Q 001073 1147 VDG 1149 (1163)
Q Consensus 1147 ~~g 1149 (1163)
.+|
T Consensus 251 ~~G 253 (305)
T 2v9p_A 251 ESG 253 (305)
T ss_dssp C--
T ss_pred eCC
Confidence 555
No 260
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.73 E-value=0.015 Score=64.79 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=23.8
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhCC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+.+.+|+|||||||||++.+|...+++
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~~g 195 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELCGG 195 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 348899999999999999999987765
No 261
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.69 E-value=0.014 Score=62.93 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=23.4
Q ss_pred CCCceEEecCCCCchhhHHHHHHHHhC
Q 001073 24 DPYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 24 ~~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
.+.+.+|+|||||||||++..|...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357889999999999999999977664
No 262
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.63 E-value=0.006 Score=65.77 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=20.2
Q ss_pred CCceEEecCCCCchhhHHHHHHHH
Q 001073 25 PYFNAITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~ 48 (1163)
..+.+|+||||+|||||+.+|...
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCEEEEECCCCCCHHHHHHHhccc
Confidence 357899999999999999998543
No 263
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.59 E-value=0.013 Score=69.20 Aligned_cols=54 Identities=7% Similarity=0.051 Sum_probs=42.6
Q ss_pred CCEEEeecCccC-----CCHHhHHHHHHHHhhhC-CCCeEEEEEeCcchh---------hh-ccceeeee
Q 001073 1092 APLYILDEVDAA-----LDLSHTQNIGRMIKTHF-PHSQFIVVSLKEGMF---------NN-ANVLFRTK 1145 (1163)
Q Consensus 1092 ~p~~~lDE~~~~-----lD~~~~~~~~~~l~~~~-~~~q~i~it~~~~~~---------~~-a~~~~gv~ 1145 (1163)
+.+++||||++. +|+..+..+..++..+. .+.++|+|||+...+ .. ||+++-..
T Consensus 139 ~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~ 208 (525)
T 1tf7_A 139 ARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 208 (525)
T ss_dssp CSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred CCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEE
Confidence 579999999985 58888888999887653 478999999998763 33 99886543
No 264
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.59 E-value=0.0083 Score=71.79 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.2
Q ss_pred CceEEecCCCCchhhHHHHHHHHh
Q 001073 26 YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.+.+|||||||||||++.+|...+
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 477999999999999999875444
No 265
>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=94.54 E-value=0.0095 Score=61.86 Aligned_cols=49 Identities=16% Similarity=0.216 Sum_probs=41.7
Q ss_pred CCChHHHHHHHHhcCCeEEecChHHHHHHHhhcCCCcceeecCCccccCCcccc
Q 001073 596 GYSDELKTAMEYVFGSTFVCKSIDAAKEVAFSREIRTPSVTLEGDIFQPSGLLT 649 (1163)
Q Consensus 596 ~~~~aie~al~~~l~nivv~~~~~~a~~I~~~k~~~~~~vT~~G~~~~~~g~i~ 649 (1163)
+|+.||+.+||..++++||.++.++..+|.+++..+.|++| |.|.+.+.
T Consensus 69 ~ye~Ave~aLG~~l~~iVV~~~~~a~~~i~~Lk~~~~Gr~t-----flpl~~i~ 117 (233)
T 2wd5_A 69 KYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPET-----FLPLDYLE 117 (233)
T ss_dssp GGHHHHHHHHGGGGSCEEESCHHHHHHHHHHHHHTTCCCEE-----EEETTTCC
T ss_pred HHHHHHHHHHHHhhcEEEECCHHHHHHHHHHHHhcCCCCeE-----EEECcccc
Confidence 78999999999999999888777777888888877889999 88876653
No 266
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.47 E-value=0.012 Score=73.04 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.9
Q ss_pred CceEEecCCCCchhhHHHHHHH
Q 001073 26 YFNAITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~ 47 (1163)
.+.+|+|||||||||+|..|..
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHH
Confidence 5889999999999999999854
No 267
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.47 E-value=0.018 Score=58.73 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=23.0
Q ss_pred cCCCCC-ceEEecCCCCchhhHHHHHHHHh
Q 001073 21 PGFDPY-FNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 21 ~~~~~~-~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
+.+.++ +.+|+||+||||||+...|.-.+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345555 56899999999999999986654
No 268
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.47 E-value=0.019 Score=58.30 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=22.7
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
+.+.+|+||+||||||+..+|.-.++
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 56889999999999999999977663
No 269
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.45 E-value=0.01 Score=64.19 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=43.0
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCC--EEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAP--LYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEG 1133 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p--~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~ 1133 (1163)
...+..|| +++++||.+++ .+|+ +++|| ||+|||+.+... -+.. ..+...|++||-.+
T Consensus 199 ~~~~~eLS---kqr~~iaral~----~~P~e~lLvLD-ptsglD~~~~~~---~~~~-~~g~t~iiiThlD~ 258 (302)
T 3b9q_A 199 YSLMEELI---ACKKAVGKIVS----GAPNEILLVLD-GNTGLNMLPQAR---EFNE-VVGITGLILTKLDG 258 (302)
T ss_dssp HHHHHHHH---HHHHHHHTTST----TCCSEEEEEEE-GGGGGGGHHHHH---HHHH-HTCCCEEEEECCSS
T ss_pred hHHHHHHH---HHHHHHHHhhc----cCCCeeEEEEe-CCCCcCHHHHHH---HHHH-hcCCCEEEEeCCCC
Confidence 35678899 88999888775 5779 99999 999999976532 1211 23678999999544
No 270
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.31 E-value=0.018 Score=62.20 Aligned_cols=26 Identities=23% Similarity=0.535 Sum_probs=23.0
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
+.+.+|+|||||||||++..|...+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 56889999999999999999987763
No 271
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.29 E-value=0.018 Score=71.86 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=19.3
Q ss_pred CceEEecCCCCchhhHHHHHH
Q 001073 26 YFNAITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~ 46 (1163)
.+.+|+|||||||||+|..|.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 588999999999999999984
No 272
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.27 E-value=0.012 Score=60.27 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=20.6
Q ss_pred CCCCCc-eEEecCCCCchhhHHHHHH
Q 001073 22 GFDPYF-NAITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 22 ~~~~~~-~~ivG~NGsGKS~i~~ai~ 46 (1163)
++.+|. .+|+||||||||||+.+|+
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHh
Confidence 345565 5999999999999999874
No 273
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.21 E-value=0.017 Score=63.73 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=43.3
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCC--EEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcc
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAP--LYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEG 1133 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p--~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~ 1133 (1163)
...+..|| +++++||.+|+ ..|+ +++|| ||+|||+.+... .+.+ ..+...|++||-.+
T Consensus 256 ~~~~~eLS---kqr~~iaral~----~~P~e~lLvLD-pttglD~~~~~~---~~~~-~~g~t~iiiThlD~ 315 (359)
T 2og2_A 256 YSLMEELI---ACKKAVGKIVS----GAPNEILLVLD-GNTGLNMLPQAR---EFNE-VVGITGLILTKLDG 315 (359)
T ss_dssp HHHHHHHH---HHHHHHHHHST----TCCSEEEEEEE-GGGGGGGHHHHH---HHHH-HTCCCEEEEESCTT
T ss_pred hhHHHHHH---HHHHHHHHHHh----cCCCceEEEEc-CCCCCCHHHHHH---HHHH-hcCCeEEEEecCcc
Confidence 35677899 88999998776 5779 99999 999999976532 1111 23678999999543
No 274
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.19 E-value=0.021 Score=59.92 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.8
Q ss_pred CceEEecCCCCchhhHHHHHHHH
Q 001073 26 YFNAITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~ 48 (1163)
.+++|+|||||||||++..|+..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 48899999999999999998774
No 275
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.17 E-value=0.013 Score=70.08 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=20.4
Q ss_pred CceEEecCCCCchhhHHHHHHHHh
Q 001073 26 YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.+.+|||||||||||++.+|...+
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 477999999999999999885544
No 276
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.16 E-value=0.036 Score=58.48 Aligned_cols=57 Identities=12% Similarity=0.050 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceee
Q 001073 1077 LLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFR 1143 (1163)
Q Consensus 1077 ~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~g 1143 (1163)
+++|+.+|+. +|+++++|||+ |+.....+.. ....+..+|++||..+....+|+++.
T Consensus 88 ~~~la~aL~~----~p~illlDEp~---D~~~~~~~l~---~~~~g~~vl~t~H~~~~~~~~dri~~ 144 (261)
T 2eyu_A 88 ADALRAALRE----DPDVIFVGEMR---DLETVETALR---AAETGHLVFGTLHTNTAIDTIHRIVD 144 (261)
T ss_dssp HHHHHHHHHH----CCSEEEESCCC---SHHHHHHHHH---HHHTTCEEEEEECCSSHHHHHHHHHH
T ss_pred HHHHHHHHhh----CCCEEEeCCCC---CHHHHHHHHH---HHccCCEEEEEeCcchHHHHHHHHhh
Confidence 5777777763 67999999999 8877654433 23346789999999888888887643
No 277
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.14 E-value=0.018 Score=72.71 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=19.2
Q ss_pred CceEEecCCCCchhhHHHHH
Q 001073 26 YFNAITGLNGSGKSNILDSI 45 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai 45 (1163)
.+.+|+|||||||||+|..|
T Consensus 790 ~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHH
Confidence 68999999999999999999
No 278
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.10 E-value=0.0037 Score=63.90 Aligned_cols=54 Identities=9% Similarity=-0.090 Sum_probs=44.0
Q ss_pred CCCCEEEeecCccCC----CHHhHHHHHHHHhhhC--CCCeEEEEEeCcch-hhhccceee
Q 001073 1090 KPAPLYILDEVDAAL----DLSHTQNIGRMIKTHF--PHSQFIVVSLKEGM-FNNANVLFR 1143 (1163)
Q Consensus 1090 ~~~p~~~lDE~~~~l----D~~~~~~~~~~l~~~~--~~~q~i~it~~~~~-~~~a~~~~g 1143 (1163)
.+||+.+||||++++ |+..+..+.+++.++. .+..+|+|||+.+. ...||+++-
T Consensus 140 ~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~ 200 (207)
T 1znw_A 140 APPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLV 200 (207)
T ss_dssp ECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC
T ss_pred ECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHH
Confidence 467999999999998 6778888988887753 46789999999764 567998854
No 279
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.08 E-value=0.02 Score=60.18 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=21.2
Q ss_pred CCCCC-ceEEecCCCCchhhHHHHHHHH
Q 001073 22 GFDPY-FNAITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 22 ~~~~~-~~~ivG~NGsGKS~i~~ai~~~ 48 (1163)
+|.+| +++|+|||||||||++..++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34444 8899999999999997776554
No 280
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=93.99 E-value=2.8 Score=36.32 Aligned_cols=8 Identities=38% Similarity=0.559 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 001073 899 ENEVKRME 906 (1163)
Q Consensus 899 ~~~~~~~~ 906 (1163)
+.++..+.
T Consensus 85 E~evasLn 92 (101)
T 3u59_A 85 EAEVASLN 92 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 281
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.94 E-value=0.025 Score=55.77 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.2
Q ss_pred ceEEecCCCCchhhHHHHHHHHhCC
Q 001073 27 FNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
.-+|+||+||||||+..+|.-.||.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~ 30 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDL 30 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4689999999999999999888874
No 282
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.93 E-value=0.026 Score=55.96 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.6
Q ss_pred CCceEEecCCCCchhhHHHHHHHHh
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
+.+-+|+||+||||||+..+|.-.|
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3466899999999999999997766
No 283
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.89 E-value=0.032 Score=58.29 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=23.6
Q ss_pred CceEEecCCCCchhhHHHHHHHHhCC
Q 001073 26 YFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
.+-+|+||+||||||+..+|.-.||.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 46699999999999999999988885
No 284
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.86 E-value=0.019 Score=62.35 Aligned_cols=25 Identities=32% Similarity=0.248 Sum_probs=22.0
Q ss_pred CCCCceEEecCCCCchhhHHHHHHH
Q 001073 23 FDPYFNAITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 23 ~~~~~~~ivG~NGsGKS~i~~ai~~ 47 (1163)
+.+++-+||||+|+|||||+.+|+.
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHC
Confidence 4567899999999999999999963
No 285
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.78 E-value=0.025 Score=56.03 Aligned_cols=22 Identities=32% Similarity=0.455 Sum_probs=18.9
Q ss_pred ceEEecCCCCchhhHHHHHHHH
Q 001073 27 FNAITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~~ 48 (1163)
.-+|+||+|||||||+.+++--
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3589999999999999998654
No 286
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.63 E-value=0.094 Score=54.24 Aligned_cols=58 Identities=10% Similarity=0.030 Sum_probs=37.9
Q ss_pred cCCCCEEEeecCccCCCHHh------------HHHHHHHHhhhC--CCCeEEEEEe----Ccch-hhhccceeeeee
Q 001073 1089 FKPAPLYILDEVDAALDLSH------------TQNIGRMIKTHF--PHSQFIVVSL----KEGM-FNNANVLFRTKF 1146 (1163)
Q Consensus 1089 ~~~~p~~~lDE~~~~lD~~~------------~~~~~~~l~~~~--~~~q~i~it~----~~~~-~~~a~~~~gv~~ 1146 (1163)
...|+++++|||++++|+.. ...+...|.... .+..+|++|| .... ...||.++-+..
T Consensus 123 ~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~ 199 (231)
T 4a74_A 123 DRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRK 199 (231)
T ss_dssp SSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEE
T ss_pred CCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEe
Confidence 45779999999999999831 224555555432 3789999999 4443 445888876655
No 287
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.62 E-value=0.032 Score=54.67 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.0
Q ss_pred CceEEecCCCCchhhHHHHHHHHh
Q 001073 26 YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.+.+|+||+||||||++.+|.-.|
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 478999999999999999987654
No 288
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=93.55 E-value=0.034 Score=62.07 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=21.4
Q ss_pred CCCCC-ceEEecCCCCchhhHHHHHHH
Q 001073 22 GFDPY-FNAITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 22 ~~~~~-~~~ivG~NGsGKS~i~~ai~~ 47 (1163)
.+.+| ..+||||||+||||++.+|+-
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 34455 459999999999999999975
No 289
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.53 E-value=0.032 Score=58.73 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=21.8
Q ss_pred ceEEecCCCCchhhHHHHHHHHhCC
Q 001073 27 FNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+-+|+||+||||||+..+|.--+|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~ 27 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGW 27 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCC
Confidence 4589999999999999999877764
No 290
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.51 E-value=0.028 Score=60.29 Aligned_cols=26 Identities=38% Similarity=0.351 Sum_probs=23.0
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
|.+.+|+||+||||||+...|.-.|+
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 55789999999999999999987775
No 291
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.49 E-value=0.022 Score=56.80 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=38.5
Q ss_pred ccccChHHHHHHH-HHHHHHHhccCCCCEEEeec--CccCCCHHhHHHHHHHHhhhCCCCeEEE--EE--eCcc
Q 001073 1067 LSELSGGQRSLLA-LSLILALLLFKPAPLYILDE--VDAALDLSHTQNIGRMIKTHFPHSQFIV--VS--LKEG 1133 (1163)
Q Consensus 1067 ~~~lSgGek~~~~-ia~~lal~~~~~~p~~~lDE--~~~~lD~~~~~~~~~~l~~~~~~~q~i~--it--~~~~ 1133 (1163)
...+|||||..+. ++. +|.....+++++|+|| |+..+|+.....+.+++.. ...+|+ || |+..
T Consensus 81 ~~~ls~~er~~~~~l~~-~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vsh~~~ 150 (189)
T 2i3b_A 81 VVDLTSFEQLALPVLRN-ADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVPKGKP 150 (189)
T ss_dssp EECHHHHHTTTTTTTCC-CCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCCCSSC
T ss_pred EEcchHHHHHHHHHHhh-hhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecCCCCc
Confidence 4468999996553 221 0001247889999999 6777888766666666653 223443 34 9863
No 292
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.42 E-value=0.038 Score=56.80 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=23.6
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhCC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
|-+.+|+||+||||||+...|.-.||.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~ 35 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGA 35 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 446799999999999999999887775
No 293
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.41 E-value=0.4 Score=57.66 Aligned_cols=17 Identities=12% Similarity=0.327 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001073 730 VKKIEQELEEAKSSAKE 746 (1163)
Q Consensus 730 i~~l~~~l~~l~~~~~~ 746 (1163)
+.++..++..++.+...
T Consensus 458 ~~~~~~~i~~l~~~~~~ 474 (597)
T 3oja_B 458 VNELRAEVQQLTNEQIQ 474 (597)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 294
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.40 E-value=0.035 Score=54.46 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=22.1
Q ss_pred ceEEecCCCCchhhHHHHHHHHhCC
Q 001073 27 FNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+-+|+||.||||||+..+|.-.||.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~ 27 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKY 27 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4589999999999999999877774
No 295
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.37 E-value=0.032 Score=54.40 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=18.1
Q ss_pred ceEEecCCCCchhhHHHHHH
Q 001073 27 FNAITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~ 46 (1163)
..+|+||+|+|||||+.++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 45899999999999999985
No 296
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.33 E-value=0.034 Score=61.65 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=21.7
Q ss_pred CCceEEecCCCCchhhHHHHHHHHh
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
..+.+|+||+||||||++.+|...+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3477999999999999999998654
No 297
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=93.32 E-value=1.8 Score=40.26 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 836 TSEVEEQKNKVAFTRTNHDQAQSELNAIRLKMKECDSQISGILKEQQKLQDKLGEAKLERKRLENEVK 903 (1163)
Q Consensus 836 ~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 903 (1163)
...+..+..++..++.........+.+...++..+...+.....+.......+..+...+..+.+.++
T Consensus 51 eEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlK 118 (147)
T 2b9c_A 51 EEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLK 118 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444443333333433333
No 298
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.30 E-value=0.033 Score=61.66 Aligned_cols=24 Identities=21% Similarity=0.445 Sum_probs=17.1
Q ss_pred CceEEecCCCCchhhHHHHHHHHh
Q 001073 26 YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.++.|+||||||||||+..|+..+
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 366777888888887777776553
No 299
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.24 E-value=0.071 Score=59.50 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=37.9
Q ss_pred CCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcc
Q 001073 1090 KPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEG 1133 (1163)
Q Consensus 1090 ~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~ 1133 (1163)
.+++++|+|||+. ||+.....+..+|.+...++.||++||++.
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 4678999999999 999999999999988777889999999865
No 300
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.18 E-value=0.018 Score=65.64 Aligned_cols=62 Identities=13% Similarity=0.036 Sum_probs=50.6
Q ss_pred ccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCC-----CC-----eEEEEEeCcchhh
Q 001073 1067 LSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFP-----HS-----QFIVVSLKEGMFN 1136 (1163)
Q Consensus 1067 ~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~-----~~-----q~i~it~~~~~~~ 1136 (1163)
+..||||+ ++++|| ...||+ ++|||+.....+.+++..... ++ .++++||+.. ..
T Consensus 256 l~~lS~g~-qrvslA-------l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~ 320 (438)
T 2dpy_A 256 LTRYAMAQ-REIALA-------IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DP 320 (438)
T ss_dssp HHHHHHHH-HHHHHH-------TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CH
T ss_pred HHHHHHHH-HHHHHH-------hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-ch
Confidence 66899999 888877 256677 999999999999999987644 43 7889999988 67
Q ss_pred hccceee
Q 001073 1137 NANVLFR 1143 (1163)
Q Consensus 1137 ~a~~~~g 1143 (1163)
.||.++.
T Consensus 321 iad~v~~ 327 (438)
T 2dpy_A 321 IADSARA 327 (438)
T ss_dssp HHHHHHH
T ss_pred hhceEEE
Confidence 7887754
No 301
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.06 E-value=0.043 Score=54.69 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=21.8
Q ss_pred ceEEecCCCCchhhHHHHHHHHhCC
Q 001073 27 FNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+-+|+||+||||||+...|.--||.
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~ 30 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGF 30 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5689999999999999999866764
No 302
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.03 E-value=0.041 Score=59.92 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=23.0
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
+.+.+|+|||||||||++..|...|.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56889999999999999999987764
No 303
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.94 E-value=0.08 Score=52.35 Aligned_cols=43 Identities=16% Similarity=0.260 Sum_probs=36.0
Q ss_pred CCCCEEEeecCcc-CCCHHhHHHHHHHHhhhC-CCCeEEEEEeCc
Q 001073 1090 KPAPLYILDEVDA-ALDLSHTQNIGRMIKTHF-PHSQFIVVSLKE 1132 (1163)
Q Consensus 1090 ~~~p~~~lDE~~~-~lD~~~~~~~~~~l~~~~-~~~q~i~it~~~ 1132 (1163)
..++++|||||++ ++|+.....+..+|.... .+..+|++||.+
T Consensus 99 ~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 99 LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 3679999999996 899988888888887653 678899999875
No 304
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.92 E-value=0.92 Score=54.47 Aligned_cols=35 Identities=14% Similarity=0.169 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 731 KKIEQELEEAKSSAKEKQLLYENSVSAVSVLEKSI 765 (1163)
Q Consensus 731 ~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l~~~i 765 (1163)
+++..++..+...+..++.+....+..+.....++
T Consensus 452 e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i 486 (597)
T 3oja_B 452 EQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEI 486 (597)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555444444444444
No 305
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.83 E-value=27 Score=44.27 Aligned_cols=14 Identities=21% Similarity=-0.007 Sum_probs=9.7
Q ss_pred cceEEEEEEEecCC
Q 001073 74 ITKATVSIVFDNSD 87 (1163)
Q Consensus 74 ~~~a~v~~~~~~~~ 87 (1163)
+...+|.++-.|..
T Consensus 654 t~phfVRCIkPN~~ 667 (1080)
T 2dfs_A 654 TTPHYVRCIKPNDF 667 (1080)
T ss_dssp SEEEEEEEECCCSS
T ss_pred cCCeeEEEecCCCC
Confidence 45678888776654
No 306
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.76 E-value=0.055 Score=56.33 Aligned_cols=26 Identities=35% Similarity=0.359 Sum_probs=22.8
Q ss_pred CceEEecCCCCchhhHHHHHHHHhCC
Q 001073 26 YFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
.+-+|+||+||||||+...|.--||.
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~ 42 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGF 42 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35699999999999999999887874
No 307
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.76 E-value=0.046 Score=60.17 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=22.3
Q ss_pred CCCCC-ceEEecCCCCchhhHHHHHHHHh
Q 001073 22 GFDPY-FNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 22 ~~~~~-~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
+|.+| ++.|+||+|||||||+..++..+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444 88999999999999998887543
No 308
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.69 E-value=0.039 Score=61.15 Aligned_cols=62 Identities=13% Similarity=0.028 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHHHHHHhcc----CCCCEEEeecCccCCCHHh------------HHHHHHHHhhhC--CCCeEEEEEeCc
Q 001073 1071 SGGQRSLLALSLILALLLF----KPAPLYILDEVDAALDLSH------------TQNIGRMIKTHF--PHSQFIVVSLKE 1132 (1163)
Q Consensus 1071 SgGek~~~~ia~~lal~~~----~~~p~~~lDE~~~~lD~~~------------~~~~~~~l~~~~--~~~q~i~it~~~ 1132 (1163)
|+++.+++.++..+.- .+ .+++++|+|||++++|+.. ...+...|.... .+..+|+++|..
T Consensus 208 ~~~~~~~l~~~~~~~~-~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~ 286 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIK-ELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ 286 (349)
T ss_dssp HHHHHHHHHHHHHHHH-HSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred hHHHHHHHHHHHHHHH-HhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccc
Confidence 6778887776654432 21 5679999999999999852 344555555543 378899999975
Q ss_pred c
Q 001073 1133 G 1133 (1163)
Q Consensus 1133 ~ 1133 (1163)
.
T Consensus 287 ~ 287 (349)
T 1pzn_A 287 A 287 (349)
T ss_dssp -
T ss_pred c
Confidence 4
No 309
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.68 E-value=0.029 Score=65.79 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=22.3
Q ss_pred ceEEecCCCCchhhHHHHHHHHhCC
Q 001073 27 FNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+.+|+||||||||||+.+|.-.|+.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHHHhhcc
Confidence 5689999999999999999888863
No 310
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.65 E-value=0.044 Score=53.82 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=18.0
Q ss_pred eEEecCCCCchhhHHHHHHH
Q 001073 28 NAITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 28 ~~ivG~NGsGKS~i~~ai~~ 47 (1163)
-+|||++|+|||||+.+++.
T Consensus 7 i~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 48999999999999999863
No 311
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.58 E-value=0.061 Score=52.05 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=21.6
Q ss_pred CceEEecCCCCchhhHHHHHHHHhC
Q 001073 26 YFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
.+.+|+||.||||||++..|.-.|.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4679999999999999999877663
No 312
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.56 E-value=0.048 Score=54.35 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=18.1
Q ss_pred ceEEecCCCCchhhHHHHHH
Q 001073 27 FNAITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~ 46 (1163)
--+|+|++|+|||||+.+++
T Consensus 9 ~i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 45899999999999999985
No 313
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.52 E-value=0.042 Score=57.93 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=22.9
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
|.+-+|+||+||||||+..+|.--||
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45679999999999999999987776
No 314
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.49 E-value=0.05 Score=54.19 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=22.5
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
+.+-+|+|++||||||+..+|.-.|+
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34679999999999999999977775
No 315
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.47 E-value=0.055 Score=58.31 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=23.5
Q ss_pred CCCceEEecCCCCchhhHHHHHHHHhC
Q 001073 24 DPYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 24 ~~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
.+.+.+|+|||||||||++..|+..+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356889999999999999999988764
No 316
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.42 E-value=0.05 Score=53.85 Aligned_cols=25 Identities=28% Similarity=0.212 Sum_probs=20.9
Q ss_pred CceEEecCCCCchhhHHHHHHH-HhC
Q 001073 26 YFNAITGLNGSGKSNILDSICF-VLG 50 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~-~lg 50 (1163)
.+-+|+||.||||||+..+|.- .+|
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~ 28 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPG 28 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTT
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCC
Confidence 4668999999999999999876 344
No 317
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.40 E-value=0.06 Score=52.95 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=21.5
Q ss_pred ceEEecCCCCchhhHHHHHHHHhCCC
Q 001073 27 FNAITGLNGSGKSNILDSICFVLGIT 52 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~~lg~~ 52 (1163)
+-+|+||.||||||+..+| --+|..
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~ 27 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAK 27 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCc
Confidence 5689999999999999999 777753
No 318
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.29 E-value=0.068 Score=52.74 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=23.6
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhCC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+.+-+|+||.||||||+..++.--||.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~ 29 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 346789999999999999999888874
No 319
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.19 E-value=0.059 Score=55.31 Aligned_cols=25 Identities=48% Similarity=0.691 Sum_probs=21.7
Q ss_pred CceEEecCCCCchhhHHHHHHHHhCC
Q 001073 26 YFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
-+-+|+||+||||||+...|.- ||.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~ 29 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGI 29 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTC
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCC
Confidence 3679999999999999999976 774
No 320
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.16 E-value=0.069 Score=56.45 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=21.6
Q ss_pred ceEEecCCCCchhhHHHHHHHHhC
Q 001073 27 FNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
-.+|+||+|||||+++.||...++
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC
Confidence 368999999999999999988776
No 321
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.15 E-value=0.056 Score=58.05 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.4
Q ss_pred CCCceEEecCCCCchhhHHHHHHHHh
Q 001073 24 DPYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 24 ~~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.|.+.+|+||+||||||+..+|.--+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999997666
No 322
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.14 E-value=0.005 Score=66.96 Aligned_cols=38 Identities=8% Similarity=0.038 Sum_probs=32.1
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCH
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDL 1106 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~ 1106 (1163)
..+..||||+++++++|.++ +.+|+++|||||+.++|+
T Consensus 172 ~~~~~lS~G~~qRv~~a~al----~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 172 ACAPVYSHLHYDIIPGAEQV----VRHPDILILEGLNVLQTG 209 (312)
T ss_dssp EEEEEEETTTTEEEEEEEEE----ECSCSEEEEECTTTTCCC
T ss_pred CCcccCChhhhhhhhhHHHh----ccCCCEEEECCccccCCc
Confidence 56789999999999977554 378899999999999873
No 323
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.99 E-value=0.07 Score=59.92 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=0.0
Q ss_pred CCCceEEecCCCCchhhHHHHHHHHh
Q 001073 24 DPYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 24 ~~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
...+++|+||||||||||+..|+...
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHh
No 324
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.90 E-value=0.063 Score=60.65 Aligned_cols=27 Identities=22% Similarity=0.550 Sum_probs=23.7
Q ss_pred CCCceEEecCCCCchhhHHHHHHHHhC
Q 001073 24 DPYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 24 ~~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
.|.+.+|+|||||||||++..|...|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367889999999999999999987773
No 325
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.89 E-value=0.09 Score=52.24 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=23.4
Q ss_pred CceEEecCCCCchhhHHHHHHHHhCCC
Q 001073 26 YFNAITGLNGSGKSNILDSICFVLGIT 52 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~lg~~ 52 (1163)
..-+|+||.||||||+..+|.-.||..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~ 32 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRI 32 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 356899999999999999998888853
No 326
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.86 E-value=0.066 Score=54.59 Aligned_cols=26 Identities=31% Similarity=0.253 Sum_probs=22.0
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
+.+-+|+||+||||||+...|.-.|+
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34678999999999999999976665
No 327
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=91.86 E-value=0.086 Score=60.98 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=22.2
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
+| .+|+||||||||+++.||...++
T Consensus 65 ~G-vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 65 KG-VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp SE-EEEECSSSSSHHHHHHHHHHHTT
T ss_pred ce-EEEECCCCCCHHHHHHHHHHHhC
Confidence 44 79999999999999999988765
No 328
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.84 E-value=0.033 Score=61.39 Aligned_cols=65 Identities=8% Similarity=0.014 Sum_probs=51.4
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhC---CCC-----eEEEEEeCcchhh
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF---PHS-----QFIVVSLKEGMFN 1136 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~---~~~-----q~i~it~~~~~~~ 1136 (1163)
.++..||||+ +++++| + ..||+ ++|||+.....+.+++.... .++ .++++||+.. -.
T Consensus 167 d~~~~lS~g~-r~v~la----l---~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~ 231 (347)
T 2obl_A 167 DSVTRYARAA-RDVGLA----S---GEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DP 231 (347)
T ss_dssp ETHHHHHHHH-HHHHHH----T---TCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CH
T ss_pred hhHHHHHHHH-HHHHHH----c---CCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-Ch
Confidence 3588999999 788877 1 45566 99999999999999998764 255 7889999988 66
Q ss_pred hccceeee
Q 001073 1137 NANVLFRT 1144 (1163)
Q Consensus 1137 ~a~~~~gv 1144 (1163)
.||+++.+
T Consensus 232 i~d~v~~i 239 (347)
T 2obl_A 232 IGDEVRSI 239 (347)
T ss_dssp HHHHHHHH
T ss_pred hhhheEEe
Confidence 78887653
No 329
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.78 E-value=0.097 Score=51.74 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=23.4
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhCC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+.+-+|+||.||||||+..+|.-.||.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~ 37 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGL 37 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 346689999999999999999888874
No 330
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.74 E-value=0.058 Score=53.60 Aligned_cols=19 Identities=37% Similarity=0.611 Sum_probs=17.3
Q ss_pred eEEecCCCCchhhHHHHHH
Q 001073 28 NAITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 28 ~~ivG~NGsGKS~i~~ai~ 46 (1163)
-+|||++|+|||||+..++
T Consensus 5 v~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEESCTTSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4899999999999999875
No 331
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.73 E-value=0.076 Score=53.16 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=23.3
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhCC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
|.+-+|+||.||||||+..+|.--||.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 31 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRL 31 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 446799999999999999999877774
No 332
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.69 E-value=0.082 Score=58.99 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=20.2
Q ss_pred eEEecCCCCchhhHHHHHHHHh
Q 001073 28 NAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 28 ~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
-+|+||||+||||++.+|.-.|
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999999998844
No 333
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.68 E-value=0.08 Score=53.59 Aligned_cols=25 Identities=44% Similarity=0.430 Sum_probs=21.9
Q ss_pred ceEEecCCCCchhhHHHHHHHHhCC
Q 001073 27 FNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+-+|+||.||||||+...|.--||.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 3589999999999999999887774
No 334
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=91.67 E-value=4.2 Score=37.79 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 869 ECDSQISGILKEQQKLQDKLGEAKLERKRLE 899 (1163)
Q Consensus 869 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 899 (1163)
............+..+...+......++.+.
T Consensus 91 raeeRae~aE~k~~eLEeeL~~~~~nlKsLE 121 (147)
T 2b9c_A 91 RAEERAELSEGKCAELEEELKTVTNNLKSLE 121 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3333333333333444444444444444443
No 335
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.62 E-value=0.073 Score=58.84 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=21.8
Q ss_pred CCceEEecCCCCchhhHHHHHHHHh
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
..+.+|+||||+||||++.+|...+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3467999999999999999998765
No 336
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.38 E-value=0.086 Score=52.67 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=22.4
Q ss_pred CceEEecCCCCchhhHHHHHHHHhC
Q 001073 26 YFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
.+-+|+||.||||||+...|.--||
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999988777
No 337
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.24 E-value=0.096 Score=54.07 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=22.2
Q ss_pred CceEEecCCCCchhhHHHHHHHHhC
Q 001073 26 YFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
.+-+|.||+||||||++..|.-.|+
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4668999999999999999988876
No 338
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.20 E-value=0.094 Score=52.55 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=23.1
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhCC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
|.+-+|+||.||||||+...|.--||.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~ 29 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGY 29 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346789999999999999999877774
No 339
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.07 E-value=0.11 Score=52.54 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=21.9
Q ss_pred CceEEecCCCCchhhHHHHHHHHhC
Q 001073 26 YFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
...+|+||+|+|||+++.||+-.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999987774
No 340
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.96 E-value=0.12 Score=52.54 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=22.7
Q ss_pred ceEEecCCCCchhhHHHHHHHHhCC
Q 001073 27 FNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+-+|+||.||||||+..+|.-.||.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~ 28 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGV 28 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 6789999999999999999888875
No 341
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.85 E-value=0.12 Score=52.60 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=39.6
Q ss_pred cccccChHHHHH-HHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhh
Q 001073 1066 SLSELSGGQRSL-LALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTH 1119 (1163)
Q Consensus 1066 ~~~~lSgGek~~-~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~ 1119 (1163)
.+..+|||++++ +..+..++ ..+++.++|||++++|..++..+...|.+.
T Consensus 146 K~D~~s~~~~~~~~~~~~~~~----~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 146 KADKLASGARKAQLNMVREAV----LAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp CGGGSCHHHHHHHHHHHHHHH----GGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred cccCCCchhHHHHHHHHHHHH----HhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 467899999988 56665554 234678899999999999999999988764
No 342
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.82 E-value=0.12 Score=51.84 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.5
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhCC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+.+-+|+||.||||||+...|.--||.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~ 35 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGY 35 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346799999999999999999877774
No 343
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.68 E-value=0.052 Score=55.51 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=20.9
Q ss_pred ceEEecCCCCchhhHHHHHHHHhC
Q 001073 27 FNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
+-+|+||.||||||++..|.-.|+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999976664
No 344
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.65 E-value=0.11 Score=55.90 Aligned_cols=26 Identities=23% Similarity=0.636 Sum_probs=23.0
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
+.+.+|+||||+||||++..|...+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56889999999999999999987773
No 345
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.61 E-value=0.15 Score=50.47 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=22.2
Q ss_pred CceEEecCCCCchhhHHHHHHHH-hCC
Q 001073 26 YFNAITGLNGSGKSNILDSICFV-LGI 51 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~-lg~ 51 (1163)
..-+|+||.||||||+..+|.-. +|.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~ 37 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGF 37 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 35689999999999999999877 563
No 346
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.57 E-value=0.1 Score=54.44 Aligned_cols=18 Identities=39% Similarity=0.541 Sum_probs=17.1
Q ss_pred EEecCCCCchhhHHHHHH
Q 001073 29 AITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~ 46 (1163)
+|||++|+|||||+.+|+
T Consensus 33 ~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 33 VLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHc
Confidence 899999999999999986
No 347
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.54 E-value=0.12 Score=51.03 Aligned_cols=28 Identities=21% Similarity=0.131 Sum_probs=19.9
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhCCC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLGIT 52 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg~~ 52 (1163)
+.+-+|+|+.||||||+...|.--||..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~ 32 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGS 32 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 4467899999999999999998778753
No 348
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.54 E-value=0.13 Score=60.63 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.9
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhCC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+...+|+||||||||+++.+|.-.++.
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 457799999999999999999988864
No 349
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.50 E-value=0.11 Score=58.46 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=23.8
Q ss_pred CCCceEEecCCCCchhhHHHHHHHHhC
Q 001073 24 DPYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 24 ~~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
.|.+.+|+|||||||||++..|...|.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 466889999999999999999988774
No 350
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=90.44 E-value=0.14 Score=57.14 Aligned_cols=21 Identities=43% Similarity=0.471 Sum_probs=19.3
Q ss_pred ceEEecCCCCchhhHHHHHHH
Q 001073 27 FNAITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~ 47 (1163)
.-+|||++||||||++.+|..
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 669999999999999999975
No 351
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.32 E-value=0.12 Score=54.95 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=22.2
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
|.+-+|+||+|||||+|..+|.-.++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45789999999999999998876665
No 352
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.26 E-value=0.11 Score=55.42 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=21.9
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
+.+-+|+||+|||||+|..+|.-.++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 34678999999999999999876665
No 353
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=90.21 E-value=0.087 Score=59.42 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=18.0
Q ss_pred ceEEecCCCCchhhHHHHHH
Q 001073 27 FNAITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~ 46 (1163)
..+|||||||||||||.+|+
T Consensus 159 ~VgLVG~~gAGKSTLL~~Ls 178 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMT 178 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHC
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 45899999999999999885
No 354
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.13 E-value=0.22 Score=54.89 Aligned_cols=50 Identities=6% Similarity=-0.033 Sum_probs=36.4
Q ss_pred cCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeCcchhhhccceeee
Q 001073 1089 FKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRT 1144 (1163)
Q Consensus 1089 ~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~~~~~~~a~~~~gv 1144 (1163)
...|+++++|||+ |+.....+... ...+..+|++||..+....+|+++.+
T Consensus 194 ~~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l 243 (356)
T 3jvv_A 194 REDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDV 243 (356)
T ss_dssp TSCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHT
T ss_pred hhCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhh
Confidence 3688999999999 65443333322 23477899999999988889988643
No 355
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.13 E-value=0.11 Score=51.85 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=21.4
Q ss_pred ceEEecCCCCchhhHHHHHHHHhC
Q 001073 27 FNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
+-+|+||.||||||+..+|.-.||
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 458999999999999999988776
No 356
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=90.12 E-value=0.13 Score=53.39 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=22.4
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
++..+|+||.|||||+++.+|.-.++
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45668999999999999999987765
No 357
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.08 E-value=0.15 Score=52.28 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=23.3
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhCC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+-+-+|+||.||||||+...|.--||.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346789999999999999999888874
No 358
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.05 E-value=0.14 Score=55.67 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.7
Q ss_pred ceEEecCCCCchhhHHHHHHHHhC
Q 001073 27 FNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
+-+|+||+|||||||..+|.-.||
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 678999999999999999987776
No 359
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.01 E-value=0.15 Score=51.22 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.5
Q ss_pred ceEEecCCCCchhhHHHHHHHHh
Q 001073 27 FNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
+-+|.||.||||||+...|.-.|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999998777
No 360
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.96 E-value=0.19 Score=49.79 Aligned_cols=26 Identities=38% Similarity=0.540 Sum_probs=22.8
Q ss_pred ceEEecCCCCchhhHHHHHHHHhCCC
Q 001073 27 FNAITGLNGSGKSNILDSICFVLGIT 52 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~~lg~~ 52 (1163)
+-+|+||.||||||+-.+|.--||..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~ 29 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVG 29 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 56899999999999999998888753
No 361
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.94 E-value=0.16 Score=49.62 Aligned_cols=25 Identities=20% Similarity=0.293 Sum_probs=22.3
Q ss_pred ceEEecCCCCchhhHHHHHHHHhCC
Q 001073 27 FNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+-+|+||.||||||+...|.-.||.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~ 28 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGY 28 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5689999999999999999887874
No 362
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.90 E-value=0.15 Score=56.45 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=21.3
Q ss_pred eEEecCCCCchhhHHHHHHHHhCC
Q 001073 28 NAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 28 ~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
.+|+||+|+||||++.++.-.+.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 799999999999999999877643
No 363
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=89.87 E-value=0.11 Score=56.54 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.3
Q ss_pred CCCCCceEEecCCCCchhhHHHHHH
Q 001073 22 GFDPYFNAITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 22 ~~~~~~~~ivG~NGsGKS~i~~ai~ 46 (1163)
+-++|+-+|+|+.|+|||||+.+|.
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~ 31 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLL 31 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHh
Confidence 3458999999999999999999985
No 364
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=89.78 E-value=0.12 Score=55.10 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=17.4
Q ss_pred eEEecCCCCchhhHHHHHH
Q 001073 28 NAITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 28 ~~ivG~NGsGKS~i~~ai~ 46 (1163)
-+|+||+|||||||+.+++
T Consensus 6 i~lvG~~g~GKTTL~n~l~ 24 (271)
T 3k53_A 6 VALVGNPNVGKTTIFNALT 24 (271)
T ss_dssp EEEEECSSSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4899999999999999984
No 365
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=89.74 E-value=0.13 Score=52.01 Aligned_cols=26 Identities=38% Similarity=0.447 Sum_probs=21.6
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhCC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
|-+-+|+||.||||||+...|.-. |.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~ 33 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GY 33 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CC
Confidence 456799999999999999998664 53
No 366
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.71 E-value=0.17 Score=57.33 Aligned_cols=25 Identities=20% Similarity=0.052 Sum_probs=20.8
Q ss_pred CCceEEecCCCCchhhHHHHHHHHh
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.+.++|+||+|||||+++..|...+
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3567999999999999999886543
No 367
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.71 E-value=0.16 Score=49.41 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=21.5
Q ss_pred eEEecCCCCchhhHHHHHHHHhCC
Q 001073 28 NAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 28 ~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
-+|+|+.||||||+...|.-.||.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~ 26 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNI 26 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 479999999999999999887875
No 368
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.70 E-value=0.13 Score=51.26 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=18.5
Q ss_pred eEEecCCCCchhhHHHHHHHH
Q 001073 28 NAITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 28 ~~ivG~NGsGKS~i~~ai~~~ 48 (1163)
-+|+|+.|+|||||+.+++..
T Consensus 51 i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 51 IIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 489999999999999998653
No 369
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=89.68 E-value=0.13 Score=55.89 Aligned_cols=24 Identities=33% Similarity=0.635 Sum_probs=21.3
Q ss_pred eEEecCCCCchhhHHHHHHHHhCC
Q 001073 28 NAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 28 ~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
.+|+||+||||||+..+|.-.||.
T Consensus 27 i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 589999999999999999887763
No 370
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=89.65 E-value=0.15 Score=52.83 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=18.8
Q ss_pred CCceEEecCCCCchhhHHHHHHH
Q 001073 25 PYFNAITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~ 47 (1163)
....+|+||+|||||+++..+.+
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHh
Confidence 45679999999999998876643
No 371
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.59 E-value=0.16 Score=51.88 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.0
Q ss_pred eEEecCCCCchhhHHHHHHHHhCC
Q 001073 28 NAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 28 ~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
-+|+||.||||||+...|.--+|.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 378999999999999999777775
No 372
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.59 E-value=0.22 Score=50.15 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=23.6
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhCCC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLGIT 52 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg~~ 52 (1163)
|-+-+|+||.||||||+...|.--||..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~ 47 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIP 47 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 4466899999999999999998777753
No 373
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=89.54 E-value=0.16 Score=50.69 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=17.9
Q ss_pred ceEEecCCCCchhhHHHHHH
Q 001073 27 FNAITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~ 46 (1163)
--+|+|+.|+|||||+.++.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 34999999999999999985
No 374
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=89.52 E-value=0.13 Score=57.10 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=18.2
Q ss_pred ceEEecCCCCchhhHHHHHH
Q 001073 27 FNAITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~ 46 (1163)
..+|||++|+|||||+.+++
T Consensus 181 ~V~lvG~~naGKSTLln~L~ 200 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLT 200 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999999999986
No 375
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=89.50 E-value=0.18 Score=54.69 Aligned_cols=27 Identities=19% Similarity=0.084 Sum_probs=23.3
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhCC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+....|+||+|||||+++.||.-.++.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~~ 75 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQA 75 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTC
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhCC
Confidence 345689999999999999999988864
No 376
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.50 E-value=0.17 Score=50.79 Aligned_cols=27 Identities=26% Similarity=0.237 Sum_probs=23.5
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhCC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+.+-+|+||.||||||+...|.--||.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~ 38 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGF 38 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 347799999999999999999877774
No 377
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=89.36 E-value=0.16 Score=50.71 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=22.6
Q ss_pred CceEEecCCCCchhhHHHHHHHHhCC
Q 001073 26 YFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
.+-+|+||.||||||+...|.--||.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~ 32 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGW 32 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46789999999999999999877774
No 378
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.35 E-value=0.12 Score=57.42 Aligned_cols=17 Identities=35% Similarity=0.724 Sum_probs=16.4
Q ss_pred EEecCCCCchhhHHHHH
Q 001073 29 AITGLNGSGKSNILDSI 45 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai 45 (1163)
+|||++|+|||||+.+|
T Consensus 41 ~vvG~~g~GKSTLln~L 57 (361)
T 2qag_A 41 MVVGESGLGKSTLINSL 57 (361)
T ss_dssp EECCCTTSCHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHH
Confidence 89999999999999997
No 379
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.34 E-value=0.17 Score=52.01 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=21.1
Q ss_pred eEEecCCCCchhhHHHHHHHHhCC
Q 001073 28 NAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 28 ~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
-+|+||.||||||+...|.--||.
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~ 26 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSL 26 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 478999999999999999877774
No 380
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.20 E-value=0.17 Score=54.64 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=21.6
Q ss_pred CceEEecCCCCchhhHHHHHHHHhC
Q 001073 26 YFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
.+-+|+||+||||||+..+|.--||
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3678999999999999999877665
No 381
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=89.16 E-value=0.19 Score=50.11 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=21.8
Q ss_pred ceEEecCCCCchhhHHHHHHHHhCC
Q 001073 27 FNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+-+|+|+-||||||+...+.-.||.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~ 38 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGA 38 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4589999999999999999877774
No 382
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=89.12 E-value=0.17 Score=57.12 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=23.3
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
|.+-+|+||+||||||++..|...|.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 67889999999999999999987663
No 383
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.10 E-value=0.18 Score=51.93 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=22.9
Q ss_pred CceEEecCCCCchhhHHHHHHHHhCC
Q 001073 26 YFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
-+-+|+||.||||||+...|.--||.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~ 33 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFEL 33 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 46799999999999999999877774
No 384
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=89.08 E-value=0.23 Score=49.46 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=17.7
Q ss_pred eEEecCCCCchhhHHHHHHH
Q 001073 28 NAITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 28 ~~ivG~NGsGKS~i~~ai~~ 47 (1163)
-+|+|+.|+|||||+.++..
T Consensus 26 i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 26 VAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 48999999999999999843
No 385
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.07 E-value=0.11 Score=60.00 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=26.6
Q ss_pred CccccCCCccccCCCCC-ceEEecCCCCchhhHHHHHHHHh
Q 001073 10 GFKSYASRTVVPGFDPY-FNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 10 nFks~~~~~~~~~~~~~-~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
||..+...+ ++|.+| +++|.||+|+|||||+..|+..+
T Consensus 189 G~~~LD~~~--gGl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 189 GFTELDRMT--SGFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp SCHHHHHHH--SSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcHHHHhhc--CCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 444443332 356665 88999999999999998876643
No 386
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.02 E-value=0.17 Score=49.05 Aligned_cols=19 Identities=26% Similarity=0.581 Sum_probs=17.5
Q ss_pred EEecCCCCchhhHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~ 47 (1163)
+|+|+.|+|||||+.++..
T Consensus 9 ~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 9 VVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHc
Confidence 7999999999999999864
No 387
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=89.01 E-value=0.15 Score=58.58 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=17.9
Q ss_pred ceEEecCCCCchhhHHHHHH
Q 001073 27 FNAITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~ 46 (1163)
-.+||||||+|||||+.+|+
T Consensus 182 kvaivG~~gvGKSTLln~l~ 201 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAIL 201 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHh
Confidence 34899999999999999885
No 388
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=89.01 E-value=0.22 Score=50.20 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=22.4
Q ss_pred CceEEecCCCCchhhHHHHHHHHhCC
Q 001073 26 YFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
.+-+|+||.||||||+...|.--||.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 45689999999999999999877774
No 389
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.93 E-value=0.19 Score=51.37 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=20.9
Q ss_pred eEEecCCCCchhhHHHHHHHHhCC
Q 001073 28 NAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 28 ~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
-+|+||.||||||+...|.--+|.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGI 26 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 368999999999999999777775
No 390
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.89 E-value=0.17 Score=48.56 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=17.5
Q ss_pred EEecCCCCchhhHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~ 47 (1163)
+|+|+.|+|||||+.++..
T Consensus 5 ~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 5 VIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhC
Confidence 7999999999999999864
No 391
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=88.69 E-value=0.2 Score=50.97 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.7
Q ss_pred CceEEecCCCCchhhHHHHHHHHhCC
Q 001073 26 YFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
-+-+|+||.||||||+..+|.-.||.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 36689999999999999999877764
No 392
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.67 E-value=0.23 Score=49.34 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.1
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
++.-+|+||.|+|||+++.++.-.+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 45569999999999999999977763
No 393
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=88.54 E-value=0.22 Score=53.76 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=22.9
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
+..-.|+||+|||||+++.||.-.++
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 45668999999999999999988776
No 394
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.52 E-value=0.23 Score=56.39 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=22.3
Q ss_pred CCceEEecCCCCchhhHHHHHHHHh
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
|.+-+|+||+|+||||++.+|...+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999998765
No 395
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.51 E-value=0.17 Score=50.01 Aligned_cols=19 Identities=26% Similarity=0.604 Sum_probs=17.3
Q ss_pred eEEecCCCCchhhHHHHHH
Q 001073 28 NAITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 28 ~~ivG~NGsGKS~i~~ai~ 46 (1163)
-+|+|++|+|||||+.++.
T Consensus 19 i~ivG~~~vGKSsL~~~l~ 37 (181)
T 1fzq_A 19 ILLLGLDNAGKTTLLKQLA 37 (181)
T ss_dssp EEEEESTTSSHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 4899999999999999875
No 396
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=88.47 E-value=0.23 Score=49.53 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.6
Q ss_pred eEEecCCCCchhhHHHHHHHHh
Q 001073 28 NAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 28 ~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
-+|+|+.||||||+...|.--|
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999997666
No 397
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=88.45 E-value=0.24 Score=48.13 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=23.4
Q ss_pred CceEEecCCCCchhhHHHHHHHHhCCC
Q 001073 26 YFNAITGLNGSGKSNILDSICFVLGIT 52 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~lg~~ 52 (1163)
..-+|+|+-||||||+...|.--||..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~ 34 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLE 34 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 456899999999999999998888863
No 398
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.45 E-value=0.19 Score=48.69 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=17.4
Q ss_pred EEecCCCCchhhHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~ 47 (1163)
+|+|+.|+|||||+.++..
T Consensus 7 ~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 7 VLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 7999999999999999864
No 399
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.44 E-value=0.19 Score=48.48 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=17.5
Q ss_pred EEecCCCCchhhHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~ 47 (1163)
+|+|+.|+|||||+.++..
T Consensus 7 ~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 7 VVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHc
Confidence 8999999999999998864
No 400
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=88.39 E-value=0.18 Score=50.25 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=18.4
Q ss_pred ceEEecCCCCchhhHHHHHHH
Q 001073 27 FNAITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~ 47 (1163)
--+|+|++|+|||||+.++..
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 349999999999999998864
No 401
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.39 E-value=0.2 Score=55.51 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=22.2
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
+.+-+|+||+|||||+|..+|.-.|+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 34678999999999999999877765
No 402
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=88.37 E-value=12 Score=34.10 Aligned_cols=35 Identities=6% Similarity=0.122 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 727 SEIVKKIEQELEEAKSSAKEKQLLYENSVSAVSVL 761 (1163)
Q Consensus 727 ~~~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~~~l 761 (1163)
+.++.++...++.+..++..+......++..+.+.
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~ 69 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADA 69 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444554455555544444444444444444333
No 403
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.30 E-value=0.21 Score=50.88 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=20.7
Q ss_pred EEecCCCCchhhHHHHHHHHhCC
Q 001073 29 AITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+|+||.||||||+...|.--||.
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~~g~ 26 (214)
T 1e4v_A 4 ILLGAPVAGKGTQAQFIMEKYGI 26 (214)
T ss_dssp EEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEECCCCCCHHHHHHHHHHHhCC
Confidence 78999999999999999877774
No 404
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=88.28 E-value=0.19 Score=48.77 Aligned_cols=19 Identities=32% Similarity=0.371 Sum_probs=17.5
Q ss_pred EEecCCCCchhhHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~ 47 (1163)
+|+|+.|+|||||+.++..
T Consensus 7 ~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 7 LLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHh
Confidence 7999999999999999864
No 405
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=88.20 E-value=0.2 Score=49.26 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=18.0
Q ss_pred EEecCCCCchhhHHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~~ 48 (1163)
+|+|+.|+|||||+.++...
T Consensus 12 ~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 12 IILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 89999999999999998653
No 406
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=88.19 E-value=0.26 Score=50.50 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=22.2
Q ss_pred ceEEecCCCCchhhHHHHHHHHhCC
Q 001073 27 FNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+-+|+||.||||||+...|.--||.
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 5589999999999999999888875
No 407
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.16 E-value=0.2 Score=48.53 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=17.4
Q ss_pred EEecCCCCchhhHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~ 47 (1163)
+|+|+.|+|||||+.++..
T Consensus 10 ~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 10 CLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHc
Confidence 8999999999999999854
No 408
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=88.14 E-value=0.19 Score=55.92 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=17.8
Q ss_pred eEEecCCCCchhhHHHHHH
Q 001073 28 NAITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 28 ~~ivG~NGsGKS~i~~ai~ 46 (1163)
.+|||+||+|||||+.+|+
T Consensus 25 vgIVG~pnvGKSTL~n~Lt 43 (396)
T 2ohf_A 25 IGIVGLPNVGKSTFFNVLT 43 (396)
T ss_dssp EEEECCSSSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999999996
No 409
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.05 E-value=0.21 Score=48.49 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=17.8
Q ss_pred EEecCCCCchhhHHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~~ 48 (1163)
+|+|+.|+|||||+.++...
T Consensus 10 ~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 10 VLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEECCTTSCHHHHHHHHHHC
T ss_pred EEECcCCCCHHHHHHHHHcC
Confidence 79999999999999998643
No 410
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=87.98 E-value=0.23 Score=51.55 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=22.8
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhCC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
++..+|+||.|+|||+++.++.-.++.
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 346799999999999999999777653
No 411
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=87.98 E-value=0.26 Score=53.97 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=21.5
Q ss_pred CceEEecCCCCchhhHHHHHHHHh
Q 001073 26 YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
+.-+|+||+|+|||+++.+|.-.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 466899999999999999998877
No 412
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.98 E-value=0.2 Score=48.19 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=17.9
Q ss_pred eEEecCCCCchhhHHHHHHH
Q 001073 28 NAITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 28 ~~ivG~NGsGKS~i~~ai~~ 47 (1163)
-+|+|+.|+|||||+.++..
T Consensus 6 i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 38999999999999999864
No 413
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=87.94 E-value=0.046 Score=59.14 Aligned_cols=56 Identities=11% Similarity=0.027 Sum_probs=38.4
Q ss_pred ccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccC-CCHHhHHHHHHHHhhhCCC--CeEEEEEeCc
Q 001073 1065 QSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAA-LDLSHTQNIGRMIKTHFPH--SQFIVVSLKE 1132 (1163)
Q Consensus 1065 ~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~-lD~~~~~~~~~~l~~~~~~--~q~i~it~~~ 1132 (1163)
..+..+|||+|++++++.++ .++++|||+++ ||+... .+++..... ..+|+.+|+.
T Consensus 109 ~~~~~~sgg~rqrv~~ara~--------~ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 109 RYLHDESGLNRRHIIDNRVH--------CCFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADT 167 (301)
T ss_dssp HHHHHHTSSCCTTCCCCCCC--------EEEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGG
T ss_pred HHHHHhCHHhhhhhhhhhhh--------heeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCC
Confidence 56788999999987655433 39999999985 999763 444444433 3455556664
No 414
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.92 E-value=0.22 Score=48.14 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=17.4
Q ss_pred EEecCCCCchhhHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~ 47 (1163)
+|+|+.|+|||||+.++..
T Consensus 8 ~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 8 IMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHh
Confidence 8999999999999999864
No 415
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.92 E-value=0.14 Score=50.44 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=18.2
Q ss_pred CCce-EEecCCCCchhhHHHHHH
Q 001073 25 PYFN-AITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 25 ~~~~-~ivG~NGsGKS~i~~ai~ 46 (1163)
+.++ +|+|++|+|||||+.++.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 3444 899999999999998874
No 416
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=87.90 E-value=0.21 Score=48.81 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=17.6
Q ss_pred EEecCCCCchhhHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~ 47 (1163)
+|+|+.|+|||||+.++..
T Consensus 11 ~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 11 ILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHc
Confidence 8999999999999999864
No 417
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=87.89 E-value=0.22 Score=48.13 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=17.6
Q ss_pred EEecCCCCchhhHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~ 47 (1163)
+|+|+.|+|||||+.++..
T Consensus 7 ~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 7 VVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHc
Confidence 7999999999999999865
No 418
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.85 E-value=0.22 Score=48.38 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=17.2
Q ss_pred EEecCCCCchhhHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~ 47 (1163)
+|+|+.|+|||||+.++..
T Consensus 7 ~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 7 AVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEECCTTSSHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHc
Confidence 7999999999999999863
No 419
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=87.84 E-value=0.25 Score=52.06 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.4
Q ss_pred CceEEecCCCCchhhHHHHHHHH
Q 001073 26 YFNAITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~ 48 (1163)
.+-+|+|+.||||||+...|.-.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999766
No 420
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=87.76 E-value=0.19 Score=54.25 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.1
Q ss_pred CCCCceEEecCCCCchhhHHHHHH
Q 001073 23 FDPYFNAITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 23 ~~~~~~~ivG~NGsGKS~i~~ai~ 46 (1163)
+..|+-+|||+.|+|||||+.++.
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~ 28 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLL 28 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHh
Confidence 445778999999999999999986
No 421
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.73 E-value=0.22 Score=48.19 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=16.8
Q ss_pred EEecCCCCchhhHHHHHH
Q 001073 29 AITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~ 46 (1163)
+|+|+.|+|||||+.++.
T Consensus 6 ~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 6 MLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 799999999999999985
No 422
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=87.72 E-value=0.21 Score=52.90 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=17.6
Q ss_pred eEEecCCCCchhhHHHHHH
Q 001073 28 NAITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 28 ~~ivG~NGsGKS~i~~ai~ 46 (1163)
-+|+|++|+|||||+.+++
T Consensus 6 I~lvG~~nvGKSTL~n~L~ 24 (272)
T 3b1v_A 6 IALIGNPNSGKTSLFNLIT 24 (272)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4899999999999999985
No 423
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=87.70 E-value=0.26 Score=55.64 Aligned_cols=24 Identities=21% Similarity=0.294 Sum_probs=21.3
Q ss_pred ceEEecCCCCchhhHHHHHHHHhC
Q 001073 27 FNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
..+|+||+|+|||+++.++.-.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 689999999999999999977664
No 424
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=87.69 E-value=0.23 Score=50.41 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=22.2
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
+.+-+|+||.||||||+..+|.--||
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45679999999999999999976555
No 425
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=87.67 E-value=0.25 Score=55.01 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=0.0
Q ss_pred CCCCCceEEecCCCCchhhHHHHH
Q 001073 22 GFDPYFNAITGLNGSGKSNILDSI 45 (1163)
Q Consensus 22 ~~~~~~~~ivG~NGsGKS~i~~ai 45 (1163)
..++...+|||+||+||||++.++
T Consensus 164 ~~~~~~v~lvG~~gvGKSTLin~L 187 (357)
T 2e87_A 164 DLEIPTVVIAGHPNVGKSTLLKAL 187 (357)
T ss_dssp CSSSCEEEEECSTTSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHH
No 426
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=87.67 E-value=0.26 Score=54.37 Aligned_cols=24 Identities=21% Similarity=0.119 Sum_probs=20.3
Q ss_pred CceEEecCCCCchhhHHHHHHHHh
Q 001073 26 YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.++.|+||||||||||+-.++..+
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999988876543
No 427
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=87.67 E-value=0.25 Score=59.29 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=23.1
Q ss_pred CceEEecCCCCchhhHHHHHHHHhCC
Q 001073 26 YFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
...+|+|||||||||++.+|...+..
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 46699999999999999999988864
No 428
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.66 E-value=0.24 Score=48.83 Aligned_cols=25 Identities=28% Similarity=0.150 Sum_probs=19.8
Q ss_pred CCCCceEEecCCCCchhhHHHHHHH
Q 001073 23 FDPYFNAITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 23 ~~~~~~~ivG~NGsGKS~i~~ai~~ 47 (1163)
..+..-+|+||.|||||++..++.-
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHH
Confidence 3445669999999999999877643
No 429
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.56 E-value=0.23 Score=48.43 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=17.1
Q ss_pred eEEecCCCCchhhHHHHHH
Q 001073 28 NAITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 28 ~~ivG~NGsGKS~i~~ai~ 46 (1163)
-+|+|+.|+|||||+.++.
T Consensus 7 i~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHh
Confidence 3899999999999999875
No 430
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=87.50 E-value=0.28 Score=53.30 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=22.6
Q ss_pred CceEEecCCCCchhhHHHHHHHHhCC
Q 001073 26 YFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+.-+|+||+|||||++..+|.-.++.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 45799999999999999999888753
No 431
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=87.49 E-value=0.24 Score=48.12 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=19.2
Q ss_pred CCce-EEecCCCCchhhHHHHHHH
Q 001073 25 PYFN-AITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 25 ~~~~-~ivG~NGsGKS~i~~ai~~ 47 (1163)
+.++ +|+|+.|+|||||+.+++.
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 3444 8999999999999999854
No 432
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=87.48 E-value=0.25 Score=49.79 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.2
Q ss_pred CceEEecCCCCchhhHHHHHHHHh
Q 001073 26 YFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
-+-+|+||.||||||+...|.-.|
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356899999999999999998766
No 433
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=87.47 E-value=0.24 Score=47.97 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=17.5
Q ss_pred EEecCCCCchhhHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~ 47 (1163)
+|+|+.|+|||||+.+++.
T Consensus 10 ~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 10 VLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHc
Confidence 7999999999999999864
No 434
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.46 E-value=1.1 Score=46.35 Aligned_cols=50 Identities=14% Similarity=0.078 Sum_probs=29.6
Q ss_pred HHHHhccCCCCEEEeecCccCCCHH-------h-----HHHHHHHHhhhC--CCCeEEEEEeCc
Q 001073 1083 ILALLLFKPAPLYILDEVDAALDLS-------H-----TQNIGRMIKTHF--PHSQFIVVSLKE 1132 (1163)
Q Consensus 1083 ~lal~~~~~~p~~~lDE~~~~lD~~-------~-----~~~~~~~l~~~~--~~~q~i~it~~~ 1132 (1163)
+..+....+++++|+|||++.+|+. . ...+...|...+ .+..+|+++|-.
T Consensus 111 ~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~ 174 (243)
T 1n0w_A 111 ASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVV 174 (243)
T ss_dssp HHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC---
T ss_pred HHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeee
Confidence 3333333577999999999999974 2 233444444432 367899999953
No 435
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=87.44 E-value=11 Score=34.46 Aligned_cols=30 Identities=0% Similarity=0.111 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 729 IVKKIEQELEEAKSSAKEKQLLYENSVSAV 758 (1163)
Q Consensus 729 ~i~~l~~~l~~l~~~~~~l~~~l~~~~~~~ 758 (1163)
++.++...++.+..++..+......++..+
T Consensus 39 Ei~elrr~iq~L~~el~~l~~~~~sLE~~l 68 (131)
T 3tnu_A 39 EISELRRTMQNLEIELQSQLSMKASLENSL 68 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 333444444444444444433333333333
No 436
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=87.41 E-value=0.22 Score=49.33 Aligned_cols=26 Identities=19% Similarity=0.065 Sum_probs=21.8
Q ss_pred CceEEecCCCCchhhHHHHHHHHhCC
Q 001073 26 YFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+.-.|.||.|+|||++..||.-.+++
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34689999999999999998777654
No 437
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=87.38 E-value=0.25 Score=46.66 Aligned_cols=23 Identities=13% Similarity=0.010 Sum_probs=19.8
Q ss_pred ceEEecCCCCchhhHHHHHHHHh
Q 001073 27 FNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
--.|+||.|||||++..+|....
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHHhC
Confidence 35899999999999999997653
No 438
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=87.36 E-value=0.19 Score=50.49 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=18.5
Q ss_pred CCceEEecCCCCchhhHHHHHH
Q 001073 25 PYFNAITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~ 46 (1163)
+.--+|+|++|+|||||+.++.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 3345999999999999999874
No 439
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.32 E-value=0.24 Score=48.45 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=18.3
Q ss_pred ceEEecCCCCchhhHHHHHHH
Q 001073 27 FNAITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~ 47 (1163)
--+|+|+.|+|||||+.+++.
T Consensus 10 ~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 10 VVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp EEEEESCTTTTHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 348999999999999999864
No 440
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=87.29 E-value=0.28 Score=55.20 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.1
Q ss_pred CCceEEecCCCCchhhHHHHHHHHh
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
++..+|+||+|+|||+++.++.-.+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999987665
No 441
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=87.27 E-value=0.26 Score=50.14 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=22.1
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
|-+-+|+||.||||||+...|.-.||
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34679999999999999999976654
No 442
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=87.20 E-value=0.24 Score=48.53 Aligned_cols=19 Identities=16% Similarity=0.466 Sum_probs=17.5
Q ss_pred EEecCCCCchhhHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~ 47 (1163)
+|+|+.|+|||||+.++..
T Consensus 18 ~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 18 VFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHc
Confidence 8999999999999999863
No 443
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=87.17 E-value=14 Score=37.96 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=29.6
Q ss_pred cccccccccCCchhHHHHHhhccCcccEEEcCcHHHHHHHH
Q 001073 510 VVAKLIKVKDSSTMTALEVTAGGKLFNVIVDTESTGKQLLQ 550 (1163)
Q Consensus 510 ~v~~~i~v~~~~~~~aie~~l~~~l~~vvv~~~~~a~~ll~ 550 (1163)
-++|-|++.| +..+++.||+..++|||+|..+++.-+.
T Consensus 127 eiYDDI~ieD---ApyfsAlyGpar~AIVV~Dl~~~~~~L~ 164 (302)
T 3ibp_A 127 EIYDDVSLED---APYFSALYGPSRHAIVVPDLSQVTEHLE 164 (302)
T ss_dssp HHSTTCCTTT---HHHHHHHTGGGGSEEECSSCHHHHHHHT
T ss_pred hhhcCCChhh---HHHHHHHhcccceeeEeCCHHHHHHHHh
Confidence 3556677766 4556778999999999999999877663
No 444
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=87.15 E-value=0.28 Score=51.41 Aligned_cols=27 Identities=33% Similarity=0.600 Sum_probs=23.3
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhCC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
|-+-+|+||.||||||+...|.-.||.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345699999999999999999887874
No 445
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=87.11 E-value=0.23 Score=49.24 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=16.8
Q ss_pred EEecCCCCchhhHHHHHH
Q 001073 29 AITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~ 46 (1163)
+|+|+.|+|||||+.+++
T Consensus 5 ~v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 5 IFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEEEBTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 799999999999999985
No 446
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=87.07 E-value=0.26 Score=47.44 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=18.2
Q ss_pred EEecCCCCchhhHHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~~ 48 (1163)
+|+|+.|+|||+|+.+++..
T Consensus 4 ~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 4 LMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 79999999999999998754
No 447
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=87.06 E-value=0.34 Score=49.52 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=23.4
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhCC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
|-+-+|+||.||||||+...|.-.||.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~ 29 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSM 29 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 346789999999999999999888874
No 448
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.06 E-value=0.25 Score=52.99 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=18.9
Q ss_pred CceEEecCCCCchhhHHHHHHHHhC
Q 001073 26 YFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
-+-+|.||.||||||+...|.-.||
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3679999999999999999977666
No 449
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=87.05 E-value=0.25 Score=48.77 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=21.7
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
++.-.|+||.|+|||+++.++.-.+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 34458999999999999999987763
No 450
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=87.00 E-value=0.26 Score=49.13 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=18.0
Q ss_pred EEecCCCCchhhHHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~~ 48 (1163)
+|+|+.|+|||||+.+++..
T Consensus 29 ~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 29 VLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEESSTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHhcC
Confidence 89999999999999998653
No 451
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=86.99 E-value=0.24 Score=48.53 Aligned_cols=18 Identities=39% Similarity=0.525 Sum_probs=16.8
Q ss_pred EEecCCCCchhhHHHHHH
Q 001073 29 AITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~ 46 (1163)
+|+|+.|+|||||+.++.
T Consensus 13 ~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 13 LIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEECCTTSCHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999984
No 452
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=86.92 E-value=0.25 Score=52.66 Aligned_cols=18 Identities=33% Similarity=0.669 Sum_probs=16.8
Q ss_pred EEecCCCCchhhHHHHHH
Q 001073 29 AITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~ 46 (1163)
+|||+.|+|||||+.+|.
T Consensus 12 ~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 12 MVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEECTTSSHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 899999999999999973
No 453
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=86.85 E-value=0.25 Score=48.44 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=18.1
Q ss_pred EEecCCCCchhhHHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~~ 48 (1163)
+|+|+.|+|||||+.++...
T Consensus 13 ~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 13 VVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEECTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 89999999999999998654
No 454
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=86.83 E-value=0.27 Score=52.49 Aligned_cols=26 Identities=38% Similarity=0.649 Sum_probs=22.0
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhCC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
|-+-+|+||.||||||+...|. -+|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~ 100 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGA 100 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTC
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCC
Confidence 3456999999999999999998 5774
No 455
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=86.81 E-value=0.34 Score=52.08 Aligned_cols=28 Identities=32% Similarity=0.404 Sum_probs=23.8
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhCCC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLGIT 52 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg~~ 52 (1163)
|..-++.||.|+|||++..||.-.+|..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4455777999999999999999999854
No 456
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=86.80 E-value=0.25 Score=47.74 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=16.6
Q ss_pred EEecCCCCchhhHHHHHH
Q 001073 29 AITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~ 46 (1163)
+|+|+.|+|||||+.++.
T Consensus 6 ~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 6 LLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEESTTSSHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHc
Confidence 799999999999999874
No 457
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=86.78 E-value=0.27 Score=48.68 Aligned_cols=19 Identities=26% Similarity=0.442 Sum_probs=17.7
Q ss_pred EEecCCCCchhhHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~ 47 (1163)
+|+|+.|+|||||+.++..
T Consensus 8 ~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 8 VVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHh
Confidence 8999999999999999874
No 458
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=86.77 E-value=0.32 Score=55.72 Aligned_cols=25 Identities=32% Similarity=0.202 Sum_probs=21.8
Q ss_pred CCceEEecCCCCchhhHHHHHHHHh
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
++.-+|+||+|+|||+++.||...+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3456899999999999999998776
No 459
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=86.68 E-value=0.34 Score=53.42 Aligned_cols=26 Identities=15% Similarity=0.394 Sum_probs=21.5
Q ss_pred CCC-CceEEecCCCCchhhHHHHHHHH
Q 001073 23 FDP-YFNAITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 23 ~~~-~~~~ivG~NGsGKS~i~~ai~~~ 48 (1163)
|.+ .++.|+||+|||||+|+-.++..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 444 47899999999999999888764
No 460
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=86.47 E-value=0.27 Score=54.47 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=19.0
Q ss_pred eEEecCCCCchhhHHHHHHHH
Q 001073 28 NAITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 28 ~~ivG~NGsGKS~i~~ai~~~ 48 (1163)
.+|||++|+|||||+.+|+..
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 489999999999999999765
No 461
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.44 E-value=0.28 Score=50.00 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=19.0
Q ss_pred eEEecCCCCchhhHHHHHHHHh
Q 001073 28 NAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 28 ~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
-+|+||.|+|||||+.++....
T Consensus 15 i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 15 IIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 4899999999999999987543
No 462
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=86.41 E-value=0.29 Score=48.66 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=17.5
Q ss_pred EEecCCCCchhhHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~ 47 (1163)
+|+|+.|+|||||+.++..
T Consensus 15 ~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 15 LALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 8999999999999999864
No 463
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=86.35 E-value=0.32 Score=49.76 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.0
Q ss_pred CceEEecCCCCchhhHHHHHHHHhC
Q 001073 26 YFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
...+|+|+.||||||++.++...++
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4679999999999999999987764
No 464
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=86.35 E-value=0.29 Score=47.83 Aligned_cols=19 Identities=21% Similarity=0.358 Sum_probs=17.4
Q ss_pred EEecCCCCchhhHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~ 47 (1163)
+|+|+.|+|||||+.++..
T Consensus 10 ~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 10 VVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEECCTTSSHHHHHHHHHG
T ss_pred EEECcCCCCHHHHHHHHHh
Confidence 8999999999999999864
No 465
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=86.30 E-value=0.3 Score=47.77 Aligned_cols=20 Identities=35% Similarity=0.353 Sum_probs=17.9
Q ss_pred EEecCCCCchhhHHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~~ 48 (1163)
+|+|+.|+|||||+.++...
T Consensus 19 ~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 19 IIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 89999999999999998653
No 466
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=86.23 E-value=0.24 Score=53.57 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=21.4
Q ss_pred CceEEecCCCCchhhHHHHHHHHhC
Q 001073 26 YFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 26 ~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
.+-+|+||.|||||+|.-+|.-.||
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3679999999999999988876665
No 467
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=86.14 E-value=0.29 Score=48.33 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=17.5
Q ss_pred EEecCCCCchhhHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~ 47 (1163)
+|+|+.|+|||||+.++..
T Consensus 11 ~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 11 VVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 7999999999999999865
No 468
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=86.12 E-value=0.29 Score=48.32 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=17.4
Q ss_pred EEecCCCCchhhHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~ 47 (1163)
+|+|+.|+|||||+.++..
T Consensus 14 ~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 14 LVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHc
Confidence 8999999999999999864
No 469
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=86.10 E-value=0.31 Score=48.23 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=17.9
Q ss_pred EEecCCCCchhhHHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~~ 48 (1163)
+|+|+.|+|||||+..+...
T Consensus 24 ~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 24 GIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEECCTTSCHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 89999999999999987653
No 470
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=86.08 E-value=0.31 Score=48.38 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=18.2
Q ss_pred EEecCCCCchhhHHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~~ 48 (1163)
+|+|+.|+|||||+.++...
T Consensus 25 ~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 25 VVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHHcC
Confidence 89999999999999998753
No 471
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=86.08 E-value=0.56 Score=44.41 Aligned_cols=41 Identities=12% Similarity=0.056 Sum_probs=29.6
Q ss_pred CCCCEEEeecCccCCCHHhHHHHHHHHhhhC-CCCe-EEEEEeC
Q 001073 1090 KPAPLYILDEVDAALDLSHTQNIGRMIKTHF-PHSQ-FIVVSLK 1131 (1163)
Q Consensus 1090 ~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~-~~~q-~i~it~~ 1131 (1163)
..++++|+|||++ +|+.....+..+|.... .+.+ +|++||.
T Consensus 82 ~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 82 FEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred hCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 3579999999998 66655777888876543 3455 7777775
No 472
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=86.08 E-value=0.3 Score=50.99 Aligned_cols=19 Identities=37% Similarity=0.405 Sum_probs=17.4
Q ss_pred EEecCCCCchhhHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~ 47 (1163)
+|||+.|+|||||+.+|..
T Consensus 25 ~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 25 ILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEESSTTSSHHHHHHHHHT
T ss_pred EEECCCCCcHHHHHHHHhC
Confidence 8999999999999999853
No 473
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=86.04 E-value=0.13 Score=53.94 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=39.8
Q ss_pred cccccccChHHHHHHHHHHHHHHhccCCCCEEEeecCccCCCHHhHHHHHHHHhhhCCCCeEEEEEeC
Q 001073 1064 KQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLK 1131 (1163)
Q Consensus 1064 ~~~~~~lSgGek~~~~ia~~lal~~~~~~p~~~lDE~~~~lD~~~~~~~~~~l~~~~~~~q~i~it~~ 1131 (1163)
...+..||||+++++++. ....+++++|||||+..+|+. +... .+..++++||.
T Consensus 111 ~~~~~~ls~g~~~r~~~~-----~~~~~~~~lilDg~~~~~~~~--------l~~~-~~~~i~v~th~ 164 (245)
T 2jeo_A 111 TVEVPTYDFVTHSRLPET-----TVVYPADVVLFEGILVFYSQE--------IRDM-FHLRLFVDTDS 164 (245)
T ss_dssp CEEECCEETTTTEECSSC-----EEECCCSEEEEECTTTTTSHH--------HHTT-CSEEEEEECCH
T ss_pred CeecccccccccCccCce-----EEecCCCEEEEeCccccccHH--------HHHh-cCeEEEEECCH
Confidence 356789999999998651 223678999999999988853 2222 25678899996
No 474
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=86.01 E-value=0.31 Score=47.94 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=17.6
Q ss_pred EEecCCCCchhhHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~ 47 (1163)
+|+|+.|+|||||+.++..
T Consensus 22 ~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 22 VVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHh
Confidence 8999999999999999874
No 475
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=85.94 E-value=15 Score=40.84 Aligned_cols=113 Identities=12% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 001073 355 CEEGAADLKKKFEELSKGLEENEKEYQGVLAGKSSGNEEKCLEDQLADAKVTVGSAETELKQLKTKIS-HCEKELKEKTH 433 (1163)
Q Consensus 355 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~ 433 (1163)
+-+.-..+...|++++..++++.+...... ..+....+.++.++.... +..+..+++. +|++.+..++.
T Consensus 55 LdkqErDltkrINELKnqLEdlsKnsKdse---------qy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKe 124 (562)
T 3ghg_A 55 IDEVNQDFTNRINKLKNSLFEYQKNNKDSH---------SLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKR 124 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHH---------HHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHhhchhHH---------HHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHH
Q 001073 434 QLMSKREEAVSVESELNARRKDVENVKLALE--------------------SDRASEMAMAQKL 477 (1163)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~--------------------~~~~~l~~~~~~~ 477 (1163)
++...-..+..|+..++.+..++++|+..+. .-...+++++.++
T Consensus 125 kVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 125 KVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQV 188 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHH
No 476
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=85.91 E-value=0.37 Score=57.06 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.8
Q ss_pred CCCceEEecCCCCchhhHHHHHHHHh
Q 001073 24 DPYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 24 ~~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
..++.+|+||.|||||+++.+|...+
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 36788999999999999999987665
No 477
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.90 E-value=0.32 Score=47.65 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=17.9
Q ss_pred EEecCCCCchhhHHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~~ 48 (1163)
+|+|+.|+|||||+.++...
T Consensus 14 ~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 14 MLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHHhC
Confidence 89999999999999998643
No 478
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=85.88 E-value=0.32 Score=47.72 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=17.5
Q ss_pred EEecCCCCchhhHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~ 47 (1163)
+|+|+.|+|||||+.++..
T Consensus 16 ~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 16 VLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHc
Confidence 8999999999999999864
No 479
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=85.86 E-value=0.4 Score=51.38 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=23.1
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhCC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+.--.|+||.|+|||+++.||.-.+|.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~~ 77 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETNA 77 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTTC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 344689999999999999999888764
No 480
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=85.86 E-value=0.32 Score=47.94 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=17.5
Q ss_pred EEecCCCCchhhHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~ 47 (1163)
+|+|+.|+|||||+.++..
T Consensus 22 ~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 22 IMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhh
Confidence 8999999999999999864
No 481
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=85.85 E-value=0.32 Score=48.98 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=17.4
Q ss_pred EEecCCCCchhhHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~ 47 (1163)
+|+|+.|+|||||+.++..
T Consensus 18 ~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 18 IMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHh
Confidence 8999999999999999864
No 482
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=85.82 E-value=0.32 Score=48.85 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=18.5
Q ss_pred eEEecCCCCchhhHHHHHHHH
Q 001073 28 NAITGLNGSGKSNILDSICFV 48 (1163)
Q Consensus 28 ~~ivG~NGsGKS~i~~ai~~~ 48 (1163)
-+|+|+.|+|||||+.+++..
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 389999999999999998654
No 483
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=85.77 E-value=0.35 Score=49.31 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=21.9
Q ss_pred ceEEecCCCCchhhHHHHHHHHhCC
Q 001073 27 FNAITGLNGSGKSNILDSICFVLGI 51 (1163)
Q Consensus 27 ~~~ivG~NGsGKS~i~~ai~~~lg~ 51 (1163)
+-+|+||.||||||+...|.--||.
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~ 31 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGL 31 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCc
Confidence 3488999999999999999887874
No 484
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=85.58 E-value=18 Score=31.57 Aligned_cols=14 Identities=14% Similarity=0.276 Sum_probs=5.2
Q ss_pred hhhhHHHHHHHHHH
Q 001073 834 GLTSEVEEQKNKVA 847 (1163)
Q Consensus 834 ~l~~~i~~~~~~~~ 847 (1163)
.+...+.-+..+++
T Consensus 116 ~LT~TiG~LrKELE 129 (167)
T 4gkw_A 116 SLTETIGILRKELE 129 (167)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 485
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=85.56 E-value=0.34 Score=48.06 Aligned_cols=19 Identities=21% Similarity=0.224 Sum_probs=17.5
Q ss_pred EEecCCCCchhhHHHHHHH
Q 001073 29 AITGLNGSGKSNILDSICF 47 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~~ 47 (1163)
+|+|+.|+|||||+.+++.
T Consensus 26 ~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 26 LLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHc
Confidence 8999999999999999864
No 486
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=85.53 E-value=0.24 Score=53.93 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=0.0
Q ss_pred cCccccCCCccccCCCCC-ceEEecCCCCchhhHHHHHHHHh
Q 001073 9 EGFKSYASRTVVPGFDPY-FNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 9 ~nFks~~~~~~~~~~~~~-~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
.||..+...+ ++|.|| ++.|.||.|+|||+|+-.|+...
T Consensus 53 TG~~~LD~~l--gGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 53 SGFTELDRMT--YGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CSCHHHHHHH--SSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CChHHHHhhc--CCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
No 487
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=85.49 E-value=0.46 Score=50.03 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=0.0
Q ss_pred CCCceEEecCCCCchhhHHHHHHHHhCCC
Q 001073 24 DPYFNAITGLNGSGKSNILDSICFVLGIT 52 (1163)
Q Consensus 24 ~~~~~~ivG~NGsGKS~i~~ai~~~lg~~ 52 (1163)
.|.--.|+||.|+|||++..||.-.+|..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~ 66 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVP 66 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCC
No 488
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=85.48 E-value=0.32 Score=48.40 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=0.0
Q ss_pred EEecCCCCchhhHHHHHH
Q 001073 29 AITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~ 46 (1163)
+|+|+.|+|||||+.+++
T Consensus 27 ~vvG~~~~GKSsli~~l~ 44 (192)
T 2fg5_A 27 CLLGDTGVGKSSIVCRFV 44 (192)
T ss_dssp EEEECTTSSHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHh
No 489
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=85.42 E-value=0.32 Score=52.61 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=0.0
Q ss_pred CCceEEecCCCCchhhHHHHHH
Q 001073 25 PYFNAITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~ 46 (1163)
|.+-+|+||.||||||+..+|.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~ 23 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFI 23 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
No 490
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=85.37 E-value=0.41 Score=50.97 Aligned_cols=30 Identities=20% Similarity=0.098 Sum_probs=0.0
Q ss_pred ccCCCCCceEEecCCCCchhhHHHHHHHHh
Q 001073 20 VPGFDPYFNAITGLNGSGKSNILDSICFVL 49 (1163)
Q Consensus 20 ~~~~~~~~~~ivG~NGsGKS~i~~ai~~~l 49 (1163)
+++|.+|++.|.||.|||||||.--++..+
T Consensus 23 ~GGl~~GiteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 23 TGGMQSGLLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp TCCBCSEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred CCCCcCCeEEEECCCCCCHHHHHHHHHHHH
No 491
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=85.34 E-value=0.35 Score=47.62 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=0.0
Q ss_pred EEecCCCCchhhHHHHHH
Q 001073 29 AITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~ 46 (1163)
+|+|+.|+|||||+.+++
T Consensus 9 ~~~G~~~~GKssl~~~l~ 26 (186)
T 1mh1_A 9 VVVGDGAVGKTCLLISYT 26 (186)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
No 492
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=85.32 E-value=0.34 Score=47.60 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=0.0
Q ss_pred EEecCCCCchhhHHHHHH
Q 001073 29 AITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~ 46 (1163)
+|+|+.|+|||||+.++.
T Consensus 10 ~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 10 AILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHH
No 493
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=85.28 E-value=0.41 Score=48.49 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=0.0
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
|.+-+|+||.||||||+-..|+--+|
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHC
No 494
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=85.28 E-value=0.35 Score=48.74 Aligned_cols=18 Identities=28% Similarity=0.565 Sum_probs=0.0
Q ss_pred EEecCCCCchhhHHHHHH
Q 001073 29 AITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~ 46 (1163)
+|+|+.|+|||||+.++.
T Consensus 12 ~v~G~~~~GKSsli~~l~ 29 (207)
T 1vg8_A 12 IILGDSGVGKTSLMNQYV 29 (207)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHH
No 495
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=85.21 E-value=0.42 Score=54.86 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=0.0
Q ss_pred CCceEEecCCCCchhhHHHHHHHHhC
Q 001073 25 PYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 25 ~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
|.--+|+||+|||||+++.||..-+|
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
No 496
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=85.13 E-value=16 Score=33.52 Aligned_cols=81 Identities=15% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 001073 224 NAELDRLRRFCIAYEYVQAEKIRDSAVGEVDRIKAKIAEIDCNTERTRLEIQEMEKQVSNLTAEKEASMGGEVKALSGKV 303 (1163)
Q Consensus 224 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (1163)
..++--+-..-.+.+|...+.+...+..+++.+..++..+..++...+-++..+..++.++..++. .+..++..++..+
T Consensus 55 ~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~-~l~~~~~~le~~~ 133 (138)
T 3hnw_A 55 AELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEIN-KYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_pred HH
Q 001073 304 DA 305 (1163)
Q Consensus 304 ~~ 305 (1163)
..
T Consensus 134 ~~ 135 (138)
T 3hnw_A 134 ND 135 (138)
T ss_dssp HH
T ss_pred Hh
No 497
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=85.06 E-value=0.55 Score=49.47 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=0.0
Q ss_pred ccCCCccccCCCCCceEEecCCCCchhhHHHHHHHHhC
Q 001073 13 SYASRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLG 50 (1163)
Q Consensus 13 s~~~~~~~~~~~~~~~~ivG~NGsGKS~i~~ai~~~lg 50 (1163)
||-+.+. .-.+.+.+++|+-|+||||++..+...|+
T Consensus 4 ~~~~~~~--~~~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 4 SHHHHHH--GMASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCCCCCT--TCCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ccccccC--CcceEEEEEeCCCCCCHHHHHHHHHHHHH
No 498
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.04 E-value=0.35 Score=48.64 Aligned_cols=18 Identities=22% Similarity=0.470 Sum_probs=0.0
Q ss_pred EEecCCCCchhhHHHHHH
Q 001073 29 AITGLNGSGKSNILDSIC 46 (1163)
Q Consensus 29 ~ivG~NGsGKS~i~~ai~ 46 (1163)
+|+|+.|+|||||+.+++
T Consensus 30 ~lvG~~~vGKSsLi~~l~ 47 (201)
T 2ew1_A 30 VLIGNAGVGKTCLVRRFT 47 (201)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHH
No 499
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=85.02 E-value=14 Score=29.94 Aligned_cols=71 Identities=11% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001073 811 HEAIVKEHASLENQLASVRMQINGLTSEVEEQKNKVAFTRTNHDQAQSELNAIRLKMKECDSQISGILKEQ 881 (1163)
Q Consensus 811 ~~~~~~~i~~~~~~l~~l~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~ 881 (1163)
++.++.++...-..+.-++.++..++.+...+..+...+....+.+..+...++.+.....+.+..+-..+
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 500
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=84.96 E-value=8.6 Score=35.27 Aligned_cols=71 Identities=15% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001073 312 REVSVLNNKDDTLRSEKENAEKIVRNIEDLKQAVEEKVSAVRKCEEGAADLKKKFEELSKGLEENEKEYQG 382 (1163)
Q Consensus 312 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 382 (1163)
.+...+-..+.....+...+....+++.+++.++...+.+++.+..++..+++++..++.++..++.++..
T Consensus 65 NiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Done!