Query 001074
Match_columns 1163
No_of_seqs 515 out of 3762
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 15:06:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001074.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001074hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2012 Ubiquitin activating e 100.0 6E-265 1E-269 2279.9 72.0 1003 148-1162 7-1013(1013)
2 TIGR01408 Ube1 ubiquitin-activ 100.0 1E-232 3E-237 2165.7 96.0 1005 155-1163 1-1008(1008)
3 cd01490 Ube1_repeat2 Ubiquitin 100.0 2E-119 5E-124 1045.2 40.4 430 577-1116 1-435 (435)
4 KOG2013 SMT3/SUMO-activating c 100.0 3.1E-79 6.7E-84 684.6 25.6 472 568-1124 5-499 (603)
5 cd01489 Uba2_SUMO Ubiquitin ac 100.0 1.7E-74 3.6E-79 649.2 26.7 304 577-1059 1-308 (312)
6 cd01491 Ube1_repeat1 Ubiquitin 100.0 2E-71 4.3E-76 617.5 27.1 285 160-544 1-285 (286)
7 cd01484 E1-2_like Ubiquitin ac 100.0 1.4E-62 3.1E-67 534.1 22.5 176 577-759 1-176 (234)
8 KOG2015 NEDD8-activating compl 100.0 2.2E-57 4.7E-62 488.5 22.8 345 566-1123 31-398 (422)
9 cd01488 Uba3_RUB Ubiquitin act 100.0 6E-57 1.3E-61 502.1 20.1 249 577-1031 1-259 (291)
10 cd01493 APPBP1_RUB Ubiquitin a 100.0 3.8E-54 8.3E-59 503.3 25.0 368 159-540 1-420 (425)
11 KOG2014 SMT3/SUMO-activating c 100.0 1.1E-53 2.5E-58 459.4 22.8 313 154-541 7-322 (331)
12 KOG2016 NEDD8-activating compl 100.0 9.8E-54 2.1E-58 476.6 13.8 377 157-540 6-516 (523)
13 cd01492 Aos1_SUMO Ubiquitin ac 100.0 3.1E-37 6.7E-42 329.1 20.3 148 159-308 2-152 (197)
14 cd01485 E1-1_like Ubiquitin ac 100.0 2.2E-36 4.8E-41 322.9 20.0 148 160-309 1-156 (198)
15 PRK08223 hypothetical protein; 100.0 9.3E-36 2E-40 330.2 16.0 182 554-745 6-202 (287)
16 TIGR02356 adenyl_thiF thiazole 100.0 1.4E-35 3.1E-40 317.8 14.2 176 557-741 1-179 (202)
17 cd00757 ThiF_MoeB_HesA_family 100.0 1.2E-34 2.6E-39 316.4 16.8 164 557-729 1-166 (228)
18 PRK05690 molybdopterin biosynt 100.0 1.7E-34 3.6E-39 318.0 14.5 166 555-729 10-178 (245)
19 PRK07411 hypothetical protein; 100.0 2.9E-34 6.2E-39 335.6 14.5 177 555-740 16-196 (390)
20 PRK08328 hypothetical protein; 100.0 2.8E-34 6E-39 313.8 13.4 164 556-728 8-172 (231)
21 PRK05597 molybdopterin biosynt 100.0 5.8E-34 1.2E-38 329.5 14.1 179 555-742 6-188 (355)
22 TIGR02355 moeB molybdopterin s 100.0 2.1E-33 4.6E-38 308.1 14.6 166 555-729 2-170 (240)
23 cd01492 Aos1_SUMO Ubiquitin ac 100.0 2.2E-33 4.7E-38 299.6 14.1 152 556-717 2-153 (197)
24 cd01493 APPBP1_RUB Ubiquitin a 100.0 7.6E-32 1.6E-36 315.9 27.3 186 556-751 1-186 (425)
25 PRK07878 molybdopterin biosynt 100.0 5.2E-32 1.1E-36 317.3 23.4 155 153-309 15-175 (392)
26 PRK07878 molybdopterin biosynt 100.0 7.6E-33 1.6E-37 324.3 15.3 164 556-728 21-190 (392)
27 cd01491 Ube1_repeat1 Ubiquitin 100.0 6.5E-33 1.4E-37 309.2 13.7 181 557-753 1-183 (286)
28 PRK05600 thiamine biosynthesis 100.0 6.9E-33 1.5E-37 321.2 14.3 176 555-739 19-201 (370)
29 cd01485 E1-1_like Ubiquitin ac 100.0 1E-32 2.2E-37 294.7 13.1 155 557-718 1-157 (198)
30 cd01489 Uba2_SUMO Ubiquitin ac 100.0 5.9E-32 1.3E-36 305.0 18.8 278 180-532 1-284 (312)
31 PRK12475 thiamine/molybdopteri 100.0 2.5E-32 5.5E-37 313.3 15.0 166 555-729 2-171 (338)
32 PRK05597 molybdopterin biosynt 100.0 1.4E-31 3E-36 309.6 20.9 152 155-308 3-160 (355)
33 PRK07688 thiamine/molybdopteri 100.0 4.8E-32 1E-36 311.1 14.6 165 555-728 2-170 (339)
34 PRK05600 thiamine biosynthesis 100.0 1.1E-30 2.4E-35 302.9 22.3 153 154-308 15-173 (370)
35 PRK08223 hypothetical protein; 100.0 1.3E-30 2.8E-35 289.3 18.0 153 157-311 6-164 (287)
36 PRK05690 molybdopterin biosynt 100.0 1.5E-30 3.2E-35 286.7 17.3 153 154-308 6-164 (245)
37 TIGR03736 PRTRC_ThiF PRTRC sys 100.0 5.5E-31 1.2E-35 287.4 13.1 162 573-743 9-194 (244)
38 TIGR02356 adenyl_thiF thiazole 100.0 1.3E-30 2.7E-35 279.6 15.4 149 160-310 1-155 (202)
39 COG0476 ThiF Dinucleotide-util 100.0 9E-31 2E-35 290.4 14.1 166 555-729 8-176 (254)
40 PRK08762 molybdopterin biosynt 100.0 1E-30 2.2E-35 305.4 15.1 177 556-741 114-298 (376)
41 cd00757 ThiF_MoeB_HesA_family 100.0 3.2E-30 6.9E-35 281.6 16.9 149 160-310 1-155 (228)
42 PRK07411 hypothetical protein; 100.0 5.8E-30 1.3E-34 299.5 18.6 155 153-309 11-171 (390)
43 KOG2017 Molybdopterin synthase 100.0 3.3E-31 7E-36 289.5 6.6 163 556-727 45-209 (427)
44 cd01488 Uba3_RUB Ubiquitin act 100.0 3.4E-29 7.4E-34 279.8 22.3 264 180-543 1-276 (291)
45 PF09358 UBA_e1_C: Ubiquitin-a 100.0 5E-31 1.1E-35 260.3 6.6 123 1036-1158 1-125 (125)
46 PRK08328 hypothetical protein; 100.0 1.4E-29 2.9E-34 276.9 18.4 156 154-311 3-163 (231)
47 PRK14851 hypothetical protein; 100.0 3.8E-30 8.3E-35 316.4 15.0 167 554-730 22-190 (679)
48 TIGR02355 moeB molybdopterin s 100.0 1.5E-29 3.2E-34 277.8 15.7 148 159-308 3-156 (240)
49 PRK14852 hypothetical protein; 100.0 7.9E-30 1.7E-34 316.4 15.0 166 554-729 311-478 (989)
50 PRK15116 sulfur acceptor prote 100.0 3.8E-29 8.3E-34 276.7 14.6 164 555-727 10-175 (268)
51 cd01484 E1-2_like Ubiquitin ac 100.0 4.4E-27 9.5E-32 256.4 23.3 227 180-518 1-233 (234)
52 cd00755 YgdL_like Family of ac 100.0 2.7E-28 5.9E-33 265.6 13.6 155 565-727 1-156 (231)
53 PRK07688 thiamine/molybdopteri 99.9 1.5E-27 3.1E-32 274.2 17.9 151 158-310 2-160 (339)
54 PRK12475 thiamine/molybdopteri 99.9 1.4E-27 3.1E-32 274.1 17.5 151 158-310 2-160 (338)
55 PRK08644 thiamine biosynthesis 99.9 8.1E-28 1.7E-32 259.5 13.9 163 555-727 8-173 (212)
56 PF00899 ThiF: ThiF family; I 99.9 1.2E-27 2.7E-32 240.5 11.6 135 574-717 1-135 (135)
57 PRK07877 hypothetical protein; 99.9 1.9E-27 4E-32 293.1 15.5 160 555-728 87-251 (722)
58 TIGR01408 Ube1 ubiquitin-activ 99.9 3.4E-27 7.4E-32 300.2 18.0 154 157-312 398-564 (1008)
59 TIGR01381 E1_like_apg7 E1-like 99.9 3.1E-27 6.7E-32 282.3 14.5 155 556-717 320-490 (664)
60 PRK15116 sulfur acceptor prote 99.9 8.1E-27 1.8E-31 258.2 16.2 142 155-298 7-153 (268)
61 COG0476 ThiF Dinucleotide-util 99.9 1E-26 2.2E-31 258.1 17.0 158 153-312 3-166 (254)
62 COG1179 Dinucleotide-utilizing 99.9 3E-27 6.6E-32 250.4 11.8 164 554-725 9-173 (263)
63 PTZ00245 ubiquitin activating 99.9 6.7E-27 1.4E-31 250.0 13.2 122 155-279 3-124 (287)
64 KOG2013 SMT3/SUMO-activating c 99.9 4E-27 8.8E-32 265.9 10.7 361 171-538 5-418 (603)
65 PRK14852 hypothetical protein; 99.9 1.6E-26 3.4E-31 287.3 16.1 168 142-311 293-469 (989)
66 PRK08762 molybdopterin biosynt 99.9 3.6E-26 7.8E-31 267.2 18.2 154 154-309 109-268 (376)
67 cd01490 Ube1_repeat2 Ubiquitin 99.9 2.3E-25 4.9E-30 260.3 23.7 131 180-312 1-144 (435)
68 PRK14851 hypothetical protein; 99.9 3.9E-26 8.4E-31 281.1 17.2 157 153-311 18-180 (679)
69 KOG2015 NEDD8-activating compl 99.9 2.8E-25 6E-30 240.9 20.6 276 168-543 30-320 (422)
70 cd01483 E1_enzyme_family Super 99.9 3.5E-26 7.5E-31 232.0 12.7 133 577-718 1-133 (143)
71 cd01486 Apg7 Apg7 is an E1-lik 99.9 1.2E-25 2.6E-30 249.4 13.3 133 577-717 1-150 (307)
72 PF00899 ThiF: ThiF family; I 99.9 7.4E-25 1.6E-29 220.3 16.8 130 177-308 1-134 (135)
73 TIGR03603 cyclo_dehy_ocin bact 99.9 5.3E-26 1.2E-30 258.8 9.0 149 556-728 53-207 (318)
74 cd01487 E1_ThiF_like E1_ThiF_l 99.9 6.1E-25 1.3E-29 230.3 13.2 142 577-728 1-145 (174)
75 PRK08644 thiamine biosynthesis 99.9 1.2E-24 2.7E-29 234.8 15.7 144 159-305 9-157 (212)
76 cd00755 YgdL_like Family of ac 99.9 1.1E-24 2.4E-29 237.3 15.0 132 168-301 1-137 (231)
77 cd01483 E1_enzyme_family Super 99.9 1.8E-24 3.9E-29 219.5 15.2 129 180-310 1-133 (143)
78 KOG2017 Molybdopterin synthase 99.9 4E-25 8.6E-30 242.0 8.7 169 153-323 39-216 (427)
79 TIGR02354 thiF_fam2 thiamine b 99.9 2.9E-24 6.3E-29 229.9 14.7 157 560-727 6-167 (200)
80 PTZ00245 ubiquitin activating 99.9 1.3E-23 2.8E-28 224.9 11.3 114 555-684 6-119 (287)
81 COG1179 Dinucleotide-utilizing 99.9 4.7E-23 1E-27 218.8 12.8 145 155-301 7-156 (263)
82 PRK07877 hypothetical protein; 99.9 6.8E-23 1.5E-27 252.9 16.0 148 154-307 83-235 (722)
83 PRK06153 hypothetical protein; 99.9 5.6E-23 1.2E-27 234.7 12.5 129 568-708 169-300 (393)
84 cd01486 Apg7 Apg7 is an E1-lik 99.9 1.9E-21 4E-26 216.2 14.7 129 180-311 1-152 (307)
85 TIGR02354 thiF_fam2 thiamine b 99.9 3.9E-21 8.5E-26 205.8 14.9 139 165-307 8-151 (200)
86 cd01487 E1_ThiF_like E1_ThiF_l 99.9 3.5E-21 7.5E-26 202.0 13.8 127 180-309 1-132 (174)
87 KOG2336 Molybdopterin biosynth 99.9 2.1E-21 4.5E-26 207.0 11.4 165 556-729 60-240 (422)
88 TIGR01381 E1_like_apg7 E1-like 99.9 5.1E-21 1.1E-25 229.3 15.8 142 168-312 328-493 (664)
89 TIGR03603 cyclo_dehy_ocin bact 99.8 5.2E-21 1.1E-25 218.0 14.2 144 154-310 48-197 (318)
90 KOG2014 SMT3/SUMO-activating c 99.8 4.8E-21 1E-25 207.9 11.2 153 556-718 12-164 (331)
91 KOG2016 NEDD8-activating compl 99.8 2E-21 4.2E-26 218.7 7.6 188 554-751 6-193 (523)
92 PF02134 UBACT: Repeat in ubiq 99.8 8.5E-21 1.8E-25 167.7 5.3 66 962-1029 1-66 (67)
93 KOG2018 Predicted dinucleotide 99.8 2.8E-20 6.2E-25 201.3 9.9 156 558-721 57-213 (430)
94 KOG2012 Ubiquitin activating e 99.8 8.3E-20 1.8E-24 217.5 7.7 152 158-311 410-574 (1013)
95 PRK06153 hypothetical protein; 99.8 7.4E-19 1.6E-23 201.1 14.3 126 170-299 168-299 (393)
96 TIGR03736 PRTRC_ThiF PRTRC sys 99.7 1E-17 2.2E-22 183.5 13.0 128 177-308 10-151 (244)
97 KOG2018 Predicted dinucleotide 99.7 6.8E-18 1.5E-22 183.1 10.2 140 157-298 53-197 (430)
98 KOG2336 Molybdopterin biosynth 99.5 3.5E-14 7.7E-19 152.2 10.5 154 154-310 55-229 (422)
99 PF10585 UBA_e1_thiolCys: Ubiq 99.5 2.5E-15 5.5E-20 121.9 1.1 45 720-764 1-45 (45)
100 KOG2337 Ubiquitin activating E 99.4 2.9E-13 6.3E-18 155.5 6.9 135 570-710 335-485 (669)
101 TIGR03693 ocin_ThiF_like putat 99.4 7.2E-13 1.6E-17 158.4 9.9 146 556-727 104-260 (637)
102 KOG2337 Ubiquitin activating E 99.1 2.2E-10 4.8E-15 132.2 10.8 138 172-312 334-495 (669)
103 TIGR03693 ocin_ThiF_like putat 99.0 1.6E-09 3.6E-14 130.1 13.2 141 154-308 99-251 (637)
104 PF02134 UBACT: Repeat in ubiq 98.1 1.1E-06 2.4E-11 78.1 1.8 50 861-915 1-50 (67)
105 COG4015 Predicted dinucleotide 97.8 7.3E-05 1.6E-09 75.9 9.2 121 178-305 18-146 (217)
106 PRK06718 precorrin-2 dehydroge 97.5 0.0015 3.3E-08 70.7 13.9 98 175-301 7-104 (202)
107 TIGR01470 cysG_Nterm siroheme 97.4 0.0027 5.8E-08 69.0 14.2 104 176-307 7-110 (205)
108 PF08825 E2_bind: E2 binding d 97.3 0.0002 4.3E-09 66.5 3.9 62 1072-1133 1-74 (84)
109 PF01488 Shikimate_DH: Shikima 97.1 0.0014 3.1E-08 66.3 7.6 78 174-274 8-85 (135)
110 COG1748 LYS9 Saccharopine dehy 97.1 0.0013 2.9E-08 77.3 8.0 99 576-707 2-100 (389)
111 PRK06719 precorrin-2 dehydroge 97.0 0.012 2.5E-07 61.4 13.8 86 175-289 10-95 (157)
112 PRK12549 shikimate 5-dehydroge 97.0 0.0017 3.7E-08 74.0 7.9 77 572-682 124-200 (284)
113 PF13241 NAD_binding_7: Putati 96.9 0.002 4.4E-08 62.1 7.0 90 175-299 4-93 (103)
114 PRK12549 shikimate 5-dehydroge 96.9 0.0031 6.7E-08 71.9 9.2 76 176-272 125-200 (284)
115 PF01488 Shikimate_DH: Shikima 96.9 0.002 4.3E-08 65.2 6.8 78 571-684 8-85 (135)
116 PRK05562 precorrin-2 dehydroge 96.9 0.016 3.5E-07 63.6 14.1 100 175-302 22-121 (223)
117 PRK06718 precorrin-2 dehydroge 96.8 0.0041 8.9E-08 67.4 9.0 100 572-712 7-106 (202)
118 COG1748 LYS9 Saccharopine dehy 96.8 0.0058 1.2E-07 72.0 10.1 98 179-303 2-104 (389)
119 COG4015 Predicted dinucleotide 96.7 0.0049 1.1E-07 63.0 7.7 126 575-713 18-146 (217)
120 TIGR03882 cyclo_dehyd_2 bacter 96.5 0.0019 4.1E-08 69.5 3.5 61 566-626 96-161 (193)
121 PRK06719 precorrin-2 dehydroge 96.4 0.016 3.4E-07 60.5 9.7 85 572-698 10-94 (157)
122 PF13241 NAD_binding_7: Putati 96.4 0.005 1.1E-07 59.4 5.3 88 572-705 4-91 (103)
123 TIGR01470 cysG_Nterm siroheme 96.4 0.012 2.7E-07 63.8 8.9 96 572-706 6-101 (205)
124 PF03435 Saccharop_dh: Sacchar 96.0 0.013 2.8E-07 69.6 7.2 97 578-705 1-97 (386)
125 PRK10637 cysG siroheme synthas 95.9 0.089 1.9E-06 64.1 14.0 105 175-307 9-113 (457)
126 PRK05562 precorrin-2 dehydroge 95.8 0.025 5.5E-07 62.1 7.8 97 572-707 22-118 (223)
127 COG1648 CysG Siroheme synthase 95.8 0.058 1.3E-06 58.9 10.5 104 175-306 9-112 (210)
128 PRK14027 quinate/shikimate deh 95.5 0.037 7.9E-07 63.2 7.9 78 176-272 125-202 (283)
129 PRK14027 quinate/shikimate deh 95.2 0.041 8.8E-07 62.8 7.1 78 573-682 125-202 (283)
130 PRK12548 shikimate 5-dehydroge 95.1 0.052 1.1E-06 62.1 7.7 84 573-682 124-207 (289)
131 PF00056 Ldh_1_N: lactate/mala 94.8 0.095 2.1E-06 53.6 8.0 76 179-273 1-78 (141)
132 PRK07819 3-hydroxybutyryl-CoA 94.8 0.061 1.3E-06 61.5 7.2 170 576-770 6-185 (286)
133 COG0373 HemA Glutamyl-tRNA red 94.8 0.049 1.1E-06 64.8 6.4 76 175-276 175-250 (414)
134 TIGR01809 Shik-DH-AROM shikima 94.7 0.067 1.4E-06 61.0 7.3 75 176-273 123-199 (282)
135 PRK14106 murD UDP-N-acetylmura 94.5 0.15 3.2E-06 61.8 10.0 95 176-296 3-97 (450)
136 TIGR01809 Shik-DH-AROM shikima 94.5 0.071 1.5E-06 60.8 6.8 76 573-682 123-198 (282)
137 PRK00258 aroE shikimate 5-dehy 94.4 0.12 2.6E-06 58.7 8.4 75 175-273 120-194 (278)
138 KOG4169 15-hydroxyprostaglandi 94.3 0.071 1.5E-06 58.1 5.7 84 573-682 3-91 (261)
139 PRK14106 murD UDP-N-acetylmura 94.3 0.085 1.8E-06 63.8 7.3 36 573-614 3-38 (450)
140 PRK00258 aroE shikimate 5-dehy 94.3 0.096 2.1E-06 59.6 7.2 36 572-612 120-155 (278)
141 PRK07066 3-hydroxybutyryl-CoA 94.3 0.16 3.4E-06 59.1 9.0 170 576-770 8-182 (321)
142 cd01065 NAD_bind_Shikimate_DH 94.2 0.076 1.6E-06 54.3 5.7 36 573-613 17-52 (155)
143 COG0169 AroE Shikimate 5-dehyd 94.2 0.13 2.9E-06 58.6 8.1 74 177-272 125-198 (283)
144 PRK12548 shikimate 5-dehydroge 94.2 0.16 3.4E-06 58.2 8.7 59 176-250 124-182 (289)
145 PF03446 NAD_binding_2: NAD bi 94.2 0.11 2.4E-06 54.2 6.8 111 179-302 2-123 (163)
146 cd05291 HicDH_like L-2-hydroxy 94.1 0.14 3.1E-06 58.9 8.3 72 179-273 1-77 (306)
147 PF05237 MoeZ_MoeB: MoeZ/MoeB 94.1 0.039 8.4E-07 51.4 2.8 41 500-540 23-64 (84)
148 PRK13940 glutamyl-tRNA reducta 93.9 0.11 2.3E-06 62.6 6.9 77 175-276 178-254 (414)
149 PF01113 DapB_N: Dihydrodipico 93.9 0.13 2.8E-06 51.4 6.3 99 577-711 2-102 (124)
150 PF02826 2-Hacid_dh_C: D-isome 93.8 0.02 4.4E-07 60.6 0.6 93 570-681 31-126 (178)
151 PF03435 Saccharop_dh: Sacchar 93.8 0.24 5.1E-06 58.9 9.6 90 181-296 1-96 (386)
152 COG1648 CysG Siroheme synthase 93.8 0.1 2.2E-06 57.0 5.9 95 572-706 9-104 (210)
153 TIGR03882 cyclo_dehyd_2 bacter 93.8 0.23 5E-06 53.5 8.5 86 165-306 92-178 (193)
154 PRK05808 3-hydroxybutyryl-CoA 93.7 0.27 5.8E-06 55.9 9.4 162 576-768 4-179 (282)
155 COG0373 HemA Glutamyl-tRNA red 93.7 0.084 1.8E-06 62.8 5.4 76 570-684 173-248 (414)
156 PF00070 Pyr_redox: Pyridine n 93.6 0.073 1.6E-06 48.6 3.7 32 577-614 1-32 (80)
157 PRK13940 glutamyl-tRNA reducta 93.5 0.11 2.4E-06 62.4 6.2 76 571-684 177-252 (414)
158 PRK12749 quinate/shikimate deh 93.5 0.27 5.8E-06 56.4 8.9 52 176-243 122-173 (288)
159 PF02737 3HCDH_N: 3-hydroxyacy 93.3 0.05 1.1E-06 57.9 2.5 164 577-767 1-174 (180)
160 PRK09260 3-hydroxybutyryl-CoA 93.1 0.079 1.7E-06 60.4 3.9 163 576-767 2-177 (288)
161 COG0169 AroE Shikimate 5-dehyd 93.1 0.21 4.5E-06 57.0 7.1 75 573-682 124-198 (283)
162 PRK10637 cysG siroheme synthas 93.1 0.24 5.2E-06 60.4 8.1 93 572-703 9-101 (457)
163 PRK04148 hypothetical protein; 93.0 0.75 1.6E-05 46.8 10.2 90 177-297 16-108 (134)
164 PRK12749 quinate/shikimate deh 93.0 0.21 4.6E-06 57.2 7.1 83 573-682 122-204 (288)
165 PRK06130 3-hydroxybutyryl-CoA 93.0 0.39 8.5E-06 55.3 9.4 33 576-614 5-37 (311)
166 PLN00203 glutamyl-tRNA reducta 92.9 0.19 4.1E-06 62.0 6.9 76 176-274 264-339 (519)
167 COG0569 TrkA K+ transport syst 92.9 0.33 7.3E-06 53.6 8.2 96 576-704 1-97 (225)
168 PF14732 UAE_UbL: Ubiquitin/SU 92.8 0.053 1.1E-06 51.0 1.5 49 1076-1124 7-57 (87)
169 cd00300 LDH_like L-lactate deh 92.7 0.79 1.7E-05 52.8 11.3 71 181-273 1-75 (300)
170 PRK08293 3-hydroxybutyryl-CoA 92.7 0.79 1.7E-05 52.3 11.2 33 576-614 4-36 (287)
171 PRK00066 ldh L-lactate dehydro 92.6 0.4 8.6E-06 55.7 8.7 76 177-273 5-82 (315)
172 cd01065 NAD_bind_Shikimate_DH 92.5 0.42 9.1E-06 48.8 7.9 35 176-210 17-51 (155)
173 PRK05476 S-adenosyl-L-homocyst 92.5 0.3 6.5E-06 58.8 7.6 38 572-615 209-246 (425)
174 PRK05708 2-dehydropantoate 2-r 92.3 0.58 1.3E-05 54.0 9.6 33 178-211 2-34 (305)
175 cd01080 NAD_bind_m-THF_DH_Cycl 92.3 0.18 4E-06 53.1 5.0 34 572-611 41-75 (168)
176 cd05213 NAD_bind_Glutamyl_tRNA 92.2 0.43 9.2E-06 55.3 8.4 83 176-284 176-258 (311)
177 PF02254 TrkA_N: TrkA-N domain 92.2 1.5 3.3E-05 42.5 11.0 87 181-295 1-93 (116)
178 TIGR01035 hemA glutamyl-tRNA r 92.1 0.35 7.6E-06 58.3 7.8 36 175-210 177-212 (417)
179 cd05311 NAD_bind_2_malic_enz N 91.8 0.13 2.7E-06 56.9 3.3 38 572-614 22-61 (226)
180 KOG4169 15-hydroxyprostaglandi 91.8 0.42 9.1E-06 52.3 7.0 63 176-259 3-66 (261)
181 PLN00203 glutamyl-tRNA reducta 91.7 2.7 5.9E-05 52.1 14.9 35 573-612 264-298 (519)
182 cd05291 HicDH_like L-2-hydroxy 91.7 0.43 9.4E-06 55.0 7.6 34 576-613 1-34 (306)
183 PLN02602 lactate dehydrogenase 91.7 0.52 1.1E-05 55.5 8.3 73 179-273 38-114 (350)
184 COG0569 TrkA K+ transport syst 91.7 1.2 2.5E-05 49.4 10.6 105 179-311 1-113 (225)
185 cd05290 LDH_3 A subgroup of L- 91.6 0.68 1.5E-05 53.6 9.0 73 180-273 1-77 (307)
186 PF03446 NAD_binding_2: NAD bi 91.6 0.34 7.3E-06 50.6 6.0 31 576-612 2-32 (163)
187 cd05293 LDH_1 A subgroup of L- 91.3 0.61 1.3E-05 54.1 8.4 74 178-273 3-80 (312)
188 PRK04148 hypothetical protein; 91.2 1.2 2.7E-05 45.2 9.3 91 574-703 16-106 (134)
189 COG0111 SerA Phosphoglycerate 91.2 0.23 5.1E-06 57.7 4.7 90 572-681 139-232 (324)
190 cd05311 NAD_bind_2_malic_enz N 91.0 0.26 5.6E-06 54.5 4.6 38 175-212 22-61 (226)
191 PRK08618 ornithine cyclodeamin 90.9 0.72 1.6E-05 53.7 8.5 162 501-704 49-219 (325)
192 PF10585 UBA_e1_thiolCys: Ubiq 90.8 0.22 4.7E-06 41.0 2.8 23 805-827 23-45 (45)
193 cd00401 AdoHcyase S-adenosyl-L 90.8 0.52 1.1E-05 56.6 7.2 90 573-706 200-289 (413)
194 PLN02819 lysine-ketoglutarate 90.7 0.57 1.2E-05 62.0 8.1 105 573-706 567-679 (1042)
195 PF00670 AdoHcyase_NAD: S-aden 90.5 0.51 1.1E-05 49.4 6.0 91 571-707 19-111 (162)
196 PTZ00117 malate dehydrogenase; 90.5 0.95 2.1E-05 52.6 8.9 35 177-211 4-38 (319)
197 cd05213 NAD_bind_Glutamyl_tRNA 90.5 0.61 1.3E-05 54.0 7.3 76 573-687 176-251 (311)
198 cd01078 NAD_bind_H4MPT_DH NADP 90.4 1 2.2E-05 48.3 8.4 78 175-273 25-106 (194)
199 PRK07063 short chain dehydroge 90.4 0.85 1.8E-05 50.5 8.2 64 572-660 4-68 (260)
200 PRK07819 3-hydroxybutyryl-CoA 90.3 1.1 2.3E-05 51.4 9.0 34 179-213 6-39 (286)
201 PRK08410 2-hydroxyacid dehydro 90.3 0.52 1.1E-05 54.6 6.5 87 572-681 142-231 (311)
202 PRK14192 bifunctional 5,10-met 90.3 0.37 8.1E-06 55.0 5.2 34 572-611 156-190 (283)
203 PRK06197 short chain dehydroge 90.2 0.65 1.4E-05 53.0 7.2 37 571-613 12-49 (306)
204 PRK15469 ghrA bifunctional gly 90.2 0.52 1.1E-05 54.6 6.4 34 573-612 134-167 (312)
205 PRK09599 6-phosphogluconate de 90.0 0.86 1.9E-05 52.4 8.0 112 180-302 2-123 (301)
206 cd01078 NAD_bind_H4MPT_DH NADP 90.0 0.88 1.9E-05 48.7 7.6 82 572-684 25-107 (194)
207 TIGR00936 ahcY adenosylhomocys 90.0 0.67 1.4E-05 55.5 7.2 37 573-615 193-229 (406)
208 PRK00066 ldh L-lactate dehydro 89.9 0.7 1.5E-05 53.7 7.1 34 575-612 6-39 (315)
209 PRK06487 glycerate dehydrogena 89.8 0.54 1.2E-05 54.7 6.1 35 572-612 145-179 (317)
210 PRK01710 murD UDP-N-acetylmura 89.8 1.6 3.4E-05 53.3 10.4 97 174-296 10-106 (458)
211 PRK00141 murD UDP-N-acetylmura 89.8 1.2 2.6E-05 54.6 9.5 95 171-296 8-103 (473)
212 PRK13243 glyoxylate reductase; 89.8 0.49 1.1E-05 55.3 5.8 35 572-612 147-181 (333)
213 cd01075 NAD_bind_Leu_Phe_Val_D 89.7 1.7 3.7E-05 47.1 9.6 36 175-211 25-60 (200)
214 PRK01438 murD UDP-N-acetylmura 89.6 1.5 3.2E-05 53.8 10.0 93 176-295 14-106 (480)
215 PRK07574 formate dehydrogenase 89.6 0.41 8.8E-06 57.1 4.9 35 572-612 189-223 (385)
216 PF03807 F420_oxidored: NADP o 89.5 2.1 4.5E-05 40.2 8.8 78 180-284 1-81 (96)
217 cd05290 LDH_3 A subgroup of L- 89.5 0.79 1.7E-05 53.1 7.1 32 577-612 1-32 (307)
218 PTZ00082 L-lactate dehydrogena 89.5 1.2 2.6E-05 51.8 8.7 35 176-210 4-38 (321)
219 TIGR00507 aroE shikimate 5-deh 89.5 1 2.2E-05 51.1 7.8 34 573-612 115-148 (270)
220 PRK05808 3-hydroxybutyryl-CoA 89.4 1.8 4E-05 49.1 10.0 33 179-212 4-36 (282)
221 PRK06932 glycerate dehydrogena 89.4 0.44 9.5E-06 55.3 5.0 35 572-612 144-178 (314)
222 PLN02545 3-hydroxybutyryl-CoA 89.4 1.9 4.2E-05 49.3 10.2 33 576-614 5-37 (295)
223 PRK07530 3-hydroxybutyryl-CoA 89.3 1 2.2E-05 51.4 7.8 33 575-613 4-36 (292)
224 PRK00045 hemA glutamyl-tRNA re 89.3 0.52 1.1E-05 56.9 5.7 74 176-275 180-253 (423)
225 PRK05854 short chain dehydroge 89.2 0.99 2.1E-05 52.0 7.7 36 572-613 11-47 (313)
226 PRK06129 3-hydroxyacyl-CoA deh 89.0 1.3 2.9E-05 51.0 8.5 33 576-614 3-35 (308)
227 TIGR02992 ectoine_eutC ectoine 89.0 1.3 2.8E-05 51.7 8.5 75 178-274 129-204 (326)
228 PRK15438 erythronate-4-phospha 88.9 0.75 1.6E-05 54.6 6.5 88 572-682 113-207 (378)
229 cd01080 NAD_bind_m-THF_DH_Cycl 88.9 0.67 1.5E-05 48.9 5.5 35 175-210 41-76 (168)
230 PF00056 Ldh_1_N: lactate/mala 88.8 1.1 2.3E-05 46.0 6.7 74 576-682 1-77 (141)
231 PRK07531 bifunctional 3-hydrox 88.7 2.1 4.6E-05 52.8 10.5 165 576-767 5-176 (495)
232 PLN03139 formate dehydrogenase 88.6 0.49 1.1E-05 56.4 4.7 36 572-613 196-231 (386)
233 PRK06130 3-hydroxybutyryl-CoA 88.6 2.5 5.5E-05 48.6 10.5 32 179-211 5-36 (311)
234 PF02737 3HCDH_N: 3-hydroxyacy 88.6 0.77 1.7E-05 48.9 5.8 33 180-213 1-33 (180)
235 PF00070 Pyr_redox: Pyridine n 88.6 2 4.3E-05 39.2 7.7 54 180-245 1-54 (80)
236 PRK06436 glycerate dehydrogena 88.3 0.53 1.2E-05 54.3 4.7 36 572-613 119-154 (303)
237 PRK06197 short chain dehydroge 88.3 1.5 3.3E-05 50.1 8.4 42 168-210 6-48 (306)
238 TIGR00507 aroE shikimate 5-deh 88.2 1.5 3.3E-05 49.6 8.2 72 177-273 116-187 (270)
239 PRK07066 3-hydroxybutyryl-CoA 88.1 0.87 1.9E-05 53.0 6.3 109 179-302 8-122 (321)
240 TIGR01759 MalateDH-SF1 malate 87.9 1.1 2.4E-05 52.3 6.9 76 179-273 4-88 (323)
241 PRK14619 NAD(P)H-dependent gly 87.9 1.3 2.8E-05 51.1 7.5 33 575-613 4-36 (308)
242 COG1086 Predicted nucleoside-d 87.9 1.8 4E-05 53.2 8.9 86 569-681 244-332 (588)
243 PRK09242 tropinone reductase; 87.8 1.8 3.8E-05 47.9 8.3 65 572-661 6-71 (257)
244 PRK00048 dihydrodipicolinate r 87.7 1.4 3E-05 49.7 7.4 90 577-710 3-94 (257)
245 PRK00257 erythronate-4-phospha 87.6 0.72 1.6E-05 54.9 5.3 35 572-612 113-147 (381)
246 PRK11880 pyrroline-5-carboxyla 87.6 2 4.4E-05 48.2 8.7 34 576-612 3-36 (267)
247 PF01210 NAD_Gly3P_dh_N: NAD-d 87.6 1.6 3.5E-05 45.3 7.3 96 577-703 1-100 (157)
248 PRK09496 trkA potassium transp 87.5 2.3 4.9E-05 51.5 9.6 88 176-289 229-322 (453)
249 PF01118 Semialdhyde_dh: Semia 87.5 1.2 2.7E-05 44.0 6.1 37 670-707 62-98 (121)
250 PRK07831 short chain dehydroge 87.4 2 4.4E-05 47.6 8.6 34 573-612 15-50 (262)
251 COG0300 DltE Short-chain dehyd 87.4 1.7 3.7E-05 49.2 7.8 64 573-662 4-68 (265)
252 PTZ00325 malate dehydrogenase; 87.4 1.2 2.6E-05 51.8 6.9 77 176-273 6-85 (321)
253 PRK07530 3-hydroxybutyryl-CoA 87.4 5.4 0.00012 45.6 12.1 33 178-211 4-36 (292)
254 PRK07634 pyrroline-5-carboxyla 87.2 2.8 6.1E-05 46.3 9.4 81 177-284 3-86 (245)
255 PLN03209 translocon at the inn 87.2 2.4 5.3E-05 52.8 9.6 35 573-613 78-113 (576)
256 PF02558 ApbA: Ketopantoate re 87.1 2 4.4E-05 43.6 7.7 87 181-288 1-91 (151)
257 PRK06141 ornithine cyclodeamin 87.1 1.8 4E-05 50.2 8.1 77 175-274 122-199 (314)
258 PRK12480 D-lactate dehydrogena 86.9 1 2.2E-05 52.7 5.9 36 572-613 143-178 (330)
259 PRK03659 glutathione-regulated 86.9 2.9 6.3E-05 52.9 10.4 90 178-295 400-495 (601)
260 PRK07062 short chain dehydroge 86.9 1.7 3.7E-05 48.3 7.5 63 573-660 6-69 (265)
261 PRK03562 glutathione-regulated 86.8 1.8 3.9E-05 54.9 8.5 88 178-293 400-493 (621)
262 PF02254 TrkA_N: TrkA-N domain 86.8 1.8 3.9E-05 41.9 6.8 85 578-697 1-85 (116)
263 cd05191 NAD_bind_amino_acid_DH 86.8 0.71 1.5E-05 42.9 3.7 39 572-615 20-58 (86)
264 PRK14175 bifunctional 5,10-met 86.7 1.1 2.4E-05 51.2 6.0 35 572-612 155-190 (286)
265 PRK07417 arogenate dehydrogena 86.7 2.7 5.8E-05 47.8 9.1 31 577-613 2-32 (279)
266 PLN02494 adenosylhomocysteinas 86.6 1.7 3.8E-05 52.8 7.7 37 573-615 252-288 (477)
267 PRK07502 cyclohexadienyl dehyd 86.6 2.9 6.2E-05 48.2 9.4 34 178-211 6-40 (307)
268 PRK06522 2-dehydropantoate 2-r 86.5 4.8 0.0001 45.8 11.1 31 180-211 2-32 (304)
269 TIGR00872 gnd_rel 6-phosphoglu 86.5 1.5 3.3E-05 50.3 7.1 111 180-301 2-121 (298)
270 PRK02705 murD UDP-N-acetylmura 86.5 3.4 7.3E-05 50.3 10.4 93 179-296 1-97 (459)
271 PRK07340 ornithine cyclodeamin 86.5 1.7 3.7E-05 50.2 7.4 76 176-275 123-199 (304)
272 COG0771 MurD UDP-N-acetylmuram 86.5 1.9 4E-05 52.4 7.9 92 176-295 5-97 (448)
273 PLN02545 3-hydroxybutyryl-CoA 86.5 3.1 6.8E-05 47.6 9.6 33 179-212 5-37 (295)
274 cd05293 LDH_1 A subgroup of L- 86.4 1.8 3.9E-05 50.3 7.5 34 575-612 3-36 (312)
275 PRK12490 6-phosphogluconate de 86.4 1.2 2.7E-05 51.1 6.3 32 180-212 2-33 (299)
276 TIGR00872 gnd_rel 6-phosphoglu 86.3 0.63 1.4E-05 53.5 3.8 32 577-614 2-33 (298)
277 COG0039 Mdh Malate/lactate deh 86.3 1.3 2.7E-05 51.3 6.1 75 179-273 1-78 (313)
278 cd05191 NAD_bind_amino_acid_DH 86.2 1.2 2.6E-05 41.4 5.0 39 174-212 19-57 (86)
279 PF03807 F420_oxidored: NADP o 86.2 0.79 1.7E-05 43.0 3.8 90 577-704 1-92 (96)
280 PLN02206 UDP-glucuronate decar 86.2 3.6 7.7E-05 50.1 10.3 102 178-304 119-238 (442)
281 PRK07576 short chain dehydroge 86.1 1.5 3.2E-05 49.1 6.5 37 571-613 5-42 (264)
282 PRK08251 short chain dehydroge 86.0 2.7 5.9E-05 46.0 8.5 62 575-661 2-64 (248)
283 PLN02928 oxidoreductase family 86.0 0.88 1.9E-05 53.5 4.8 35 572-612 156-190 (347)
284 PRK06141 ornithine cyclodeamin 85.8 2.1 4.6E-05 49.6 7.8 142 501-684 48-199 (314)
285 PRK05479 ketol-acid reductoiso 85.7 4.1 8.9E-05 47.7 10.0 35 571-611 13-47 (330)
286 PRK11154 fadJ multifunctional 85.6 0.76 1.6E-05 59.1 4.4 172 576-770 310-488 (708)
287 PRK12826 3-ketoacyl-(acyl-carr 85.5 2.3 5E-05 46.4 7.6 36 573-614 4-40 (251)
288 PRK08339 short chain dehydroge 85.4 2.6 5.6E-05 47.1 8.1 35 573-613 6-41 (263)
289 PLN02350 phosphogluconate dehy 85.4 1.6 3.4E-05 53.7 6.8 117 179-302 7-136 (493)
290 PRK05867 short chain dehydroge 85.4 1.7 3.6E-05 48.0 6.5 34 573-612 7-41 (253)
291 PRK07340 ornithine cyclodeamin 85.4 1.2 2.7E-05 51.4 5.5 141 501-684 49-198 (304)
292 PRK00094 gpsA NAD(P)H-dependen 85.4 4.7 0.0001 46.4 10.4 32 180-212 3-34 (325)
293 PRK06035 3-hydroxyacyl-CoA deh 85.3 2.8 6E-05 47.9 8.3 33 179-212 4-36 (291)
294 PRK07231 fabG 3-ketoacyl-(acyl 85.2 2.1 4.4E-05 46.8 7.0 35 573-613 3-38 (251)
295 PRK10537 voltage-gated potassi 85.2 2 4.4E-05 51.4 7.4 93 173-295 235-333 (393)
296 PRK08618 ornithine cyclodeamin 85.1 3 6.5E-05 48.6 8.6 78 177-276 126-204 (325)
297 PLN02819 lysine-ketoglutarate 85.1 2.3 4.9E-05 56.6 8.3 95 177-297 568-678 (1042)
298 PF01113 DapB_N: Dihydrodipico 85.1 3 6.6E-05 41.6 7.5 93 180-297 2-97 (124)
299 PRK07523 gluconate 5-dehydroge 85.1 2.6 5.6E-05 46.5 7.8 36 572-613 7-43 (255)
300 PRK04308 murD UDP-N-acetylmura 84.9 4.3 9.3E-05 49.2 10.2 94 176-296 3-96 (445)
301 PF13460 NAD_binding_10: NADH( 84.9 8.5 0.00019 40.1 11.2 93 181-304 1-103 (183)
302 PRK09186 flagellin modificatio 84.8 2.5 5.4E-05 46.5 7.5 33 573-611 2-35 (256)
303 PLN02602 lactate dehydrogenase 84.8 2.1 4.5E-05 50.5 7.1 33 576-612 38-70 (350)
304 PRK11790 D-3-phosphoglycerate 84.7 1.3 2.9E-05 53.2 5.6 35 572-612 148-182 (409)
305 PLN02206 UDP-glucuronate decar 84.7 2.7 5.8E-05 51.2 8.2 34 573-612 117-151 (442)
306 PRK06223 malate dehydrogenase; 84.7 5.3 0.00012 46.0 10.4 32 179-210 3-34 (307)
307 PLN02306 hydroxypyruvate reduc 84.7 1 2.2E-05 53.8 4.6 35 572-612 162-197 (386)
308 COG1893 ApbA Ketopantoate redu 84.7 6.7 0.00014 45.5 11.1 84 179-289 1-92 (307)
309 PRK06249 2-dehydropantoate 2-r 84.7 1.7 3.6E-05 50.3 6.2 34 178-212 5-38 (313)
310 PRK11908 NAD-dependent epimera 84.7 3.8 8.2E-05 47.7 9.3 31 576-612 2-34 (347)
311 PF02826 2-Hacid_dh_C: D-isome 84.6 0.83 1.8E-05 48.4 3.4 42 171-213 29-70 (178)
312 PRK07680 late competence prote 84.6 5.7 0.00012 45.0 10.4 78 180-284 2-82 (273)
313 cd01338 MDH_choloroplast_like 84.6 1.4 3E-05 51.4 5.5 74 179-273 3-87 (322)
314 PRK02006 murD UDP-N-acetylmura 84.6 3.4 7.4E-05 51.0 9.2 94 176-295 5-101 (498)
315 PRK08293 3-hydroxybutyryl-CoA 84.5 7.2 0.00016 44.5 11.2 32 179-211 4-35 (287)
316 PRK08217 fabG 3-ketoacyl-(acyl 84.4 2.1 4.5E-05 46.8 6.6 34 573-612 3-37 (253)
317 cd01075 NAD_bind_Leu_Phe_Val_D 84.4 0.9 1.9E-05 49.3 3.6 36 572-613 25-60 (200)
318 PRK09242 tropinone reductase; 84.4 5.3 0.00011 44.1 9.8 63 175-257 6-69 (257)
319 PRK05854 short chain dehydroge 84.3 4.7 0.0001 46.5 9.8 57 175-251 11-68 (313)
320 PRK07478 short chain dehydroge 84.2 2 4.3E-05 47.4 6.4 34 573-612 4-38 (254)
321 PRK07502 cyclohexadienyl dehyd 84.2 3.6 7.7E-05 47.4 8.7 35 575-613 6-40 (307)
322 PRK04690 murD UDP-N-acetylmura 84.2 3.5 7.7E-05 50.5 9.1 92 176-296 6-98 (468)
323 cd01339 LDH-like_MDH L-lactate 84.2 8 0.00017 44.5 11.5 31 181-211 1-31 (300)
324 PRK07417 arogenate dehydrogena 84.1 4.1 8.9E-05 46.3 9.0 31 180-211 2-32 (279)
325 cd05292 LDH_2 A subgroup of L- 84.0 3.3 7.2E-05 47.9 8.3 31 180-210 2-33 (308)
326 PRK09599 6-phosphogluconate de 83.9 1.3 2.9E-05 50.8 5.0 32 577-614 2-33 (301)
327 PRK07679 pyrroline-5-carboxyla 83.9 5.8 0.00013 45.1 10.1 82 177-285 2-86 (279)
328 PRK15409 bifunctional glyoxyla 83.9 1.6 3.5E-05 50.9 5.6 35 572-612 142-177 (323)
329 TIGR00465 ilvC ketol-acid redu 83.8 5.1 0.00011 46.6 9.7 33 176-209 1-33 (314)
330 PRK11730 fadB multifunctional 83.8 1 2.2E-05 58.0 4.4 169 576-770 314-491 (715)
331 PRK06545 prephenate dehydrogen 83.8 6.2 0.00014 46.6 10.6 32 576-613 1-32 (359)
332 cd00300 LDH_like L-lactate deh 83.7 2.6 5.6E-05 48.6 7.2 72 578-683 1-75 (300)
333 PRK12921 2-dehydropantoate 2-r 83.7 6.9 0.00015 44.7 10.7 30 180-210 2-31 (305)
334 PRK14618 NAD(P)H-dependent gly 83.6 6.1 0.00013 45.9 10.3 32 179-211 5-36 (328)
335 TIGR01915 npdG NADPH-dependent 83.5 7.8 0.00017 42.4 10.6 84 180-284 2-88 (219)
336 PRK03562 glutathione-regulated 83.4 1.3 2.7E-05 56.3 4.9 89 575-698 400-488 (621)
337 TIGR02992 ectoine_eutC ectoine 83.4 3.1 6.8E-05 48.5 7.8 146 500-684 49-204 (326)
338 PRK05479 ketol-acid reductoiso 83.4 2.8 6E-05 49.0 7.3 36 173-209 12-47 (330)
339 PRK07531 bifunctional 3-hydrox 83.4 6 0.00013 48.9 10.7 33 179-212 5-37 (495)
340 PRK04663 murD UDP-N-acetylmura 83.4 3.1 6.6E-05 50.5 8.0 125 174-332 2-129 (438)
341 PLN02780 ketoreductase/ oxidor 83.4 3.3 7.2E-05 48.1 8.0 61 575-660 53-114 (320)
342 cd00401 AdoHcyase S-adenosyl-L 83.4 5.6 0.00012 47.9 10.0 36 176-212 200-235 (413)
343 PRK06523 short chain dehydroge 83.3 2.8 6E-05 46.4 7.0 76 572-655 6-83 (260)
344 PRK05866 short chain dehydroge 83.3 3.3 7.2E-05 47.2 7.9 34 573-612 38-72 (293)
345 PTZ00142 6-phosphogluconate de 83.3 2.3 5E-05 52.1 6.9 116 179-301 2-129 (470)
346 PRK05335 tRNA (uracil-5-)-meth 83.2 0.98 2.1E-05 54.4 3.6 34 575-614 2-35 (436)
347 TIGR01757 Malate-DH_plant mala 83.2 3.4 7.4E-05 49.3 8.1 76 179-273 45-129 (387)
348 PF01210 NAD_Gly3P_dh_N: NAD-d 83.2 4.7 0.0001 41.8 8.3 99 180-302 1-106 (157)
349 COG1250 FadB 3-hydroxyacyl-CoA 83.2 1.7 3.6E-05 50.3 5.3 106 576-709 4-120 (307)
350 PF00106 adh_short: short chai 83.1 1.7 3.6E-05 44.5 4.8 61 576-660 1-62 (167)
351 PRK14619 NAD(P)H-dependent gly 83.0 5.4 0.00012 46.0 9.5 33 178-211 4-36 (308)
352 PRK11559 garR tartronate semia 83.0 3.3 7.2E-05 47.3 7.7 89 576-707 3-97 (296)
353 PRK07063 short chain dehydroge 82.9 4.7 0.0001 44.6 8.7 35 175-210 4-39 (260)
354 PF01118 Semialdhyde_dh: Semia 82.9 6.6 0.00014 38.8 8.8 88 180-295 1-94 (121)
355 TIGR02440 FadJ fatty oxidation 82.8 1.1 2.5E-05 57.4 4.3 170 576-770 305-483 (699)
356 PRK05708 2-dehydropantoate 2-r 82.8 1.1 2.3E-05 51.9 3.6 33 575-613 2-34 (305)
357 PLN03129 NADP-dependent malic 82.8 0.61 1.3E-05 57.7 1.7 108 571-705 317-434 (581)
358 PRK09260 3-hydroxybutyryl-CoA 82.8 7.7 0.00017 44.3 10.5 33 179-212 2-34 (288)
359 PRK02472 murD UDP-N-acetylmura 82.7 4.4 9.6E-05 49.0 9.1 94 176-296 3-97 (447)
360 PRK05875 short chain dehydroge 82.7 3.7 8E-05 45.9 7.9 35 572-612 4-39 (276)
361 PRK08655 prephenate dehydrogen 82.7 5.3 0.00012 48.6 9.7 89 577-707 2-93 (437)
362 PRK11880 pyrroline-5-carboxyla 82.6 6.4 0.00014 44.2 9.7 32 179-210 3-36 (267)
363 KOG0069 Glyoxylate/hydroxypyru 82.4 1.2 2.7E-05 51.8 3.9 94 570-707 157-254 (336)
364 PRK05565 fabG 3-ketoacyl-(acyl 82.4 4.1 8.9E-05 44.3 7.9 34 573-612 3-38 (247)
365 PLN02253 xanthoxin dehydrogena 82.4 3.1 6.6E-05 46.7 7.0 35 572-612 15-50 (280)
366 PRK08291 ectoine utilization p 82.4 4.6 0.0001 47.2 8.7 75 178-274 132-207 (330)
367 TIGR00873 gnd 6-phosphoglucona 82.3 3 6.6E-05 51.1 7.4 116 180-301 1-126 (467)
368 PRK06928 pyrroline-5-carboxyla 82.3 7.4 0.00016 44.3 10.1 79 180-284 3-84 (277)
369 cd05296 GH4_P_beta_glucosidase 82.3 3.2 6.8E-05 50.2 7.4 109 180-308 2-117 (419)
370 PTZ00431 pyrroline carboxylate 82.3 3.2 6.9E-05 46.8 7.1 38 574-613 2-39 (260)
371 PRK06476 pyrroline-5-carboxyla 82.3 4.1 9E-05 45.6 8.0 90 577-704 2-91 (258)
372 COG1063 Tdh Threonine dehydrog 82.2 4.6 9.9E-05 47.6 8.7 103 577-709 171-273 (350)
373 PRK13304 L-aspartate dehydroge 82.2 4 8.6E-05 46.2 7.8 90 576-705 2-91 (265)
374 PRK07067 sorbitol dehydrogenas 82.2 2.1 4.6E-05 47.2 5.6 36 573-614 4-40 (257)
375 PRK07062 short chain dehydroge 82.1 6.8 0.00015 43.4 9.6 59 176-254 6-65 (265)
376 PRK14620 NAD(P)H-dependent gly 82.1 4.2 9E-05 47.2 8.2 31 180-211 2-32 (326)
377 PLN03209 translocon at the inn 82.1 8.2 0.00018 48.3 11.0 34 176-210 78-112 (576)
378 TIGR01035 hemA glutamyl-tRNA r 82.1 1.1 2.5E-05 53.9 3.6 36 572-612 177-212 (417)
379 PRK05442 malate dehydrogenase; 82.0 2.1 4.6E-05 50.0 5.7 74 179-273 5-89 (326)
380 PRK03803 murD UDP-N-acetylmura 81.8 5 0.00011 48.7 9.0 124 178-332 6-129 (448)
381 PRK13302 putative L-aspartate 81.8 3.5 7.5E-05 46.9 7.2 87 574-703 5-95 (271)
382 PRK08229 2-dehydropantoate 2-r 81.7 9.8 0.00021 44.3 11.1 94 180-302 4-110 (341)
383 PF00106 adh_short: short chai 81.7 6.6 0.00014 40.0 8.7 59 179-256 1-60 (167)
384 TIGR01763 MalateDH_bact malate 81.7 11 0.00023 43.7 11.3 32 179-210 2-33 (305)
385 PTZ00431 pyrroline carboxylate 81.7 6.5 0.00014 44.3 9.3 34 177-210 2-38 (260)
386 TIGR02437 FadB fatty oxidation 81.7 2.3 4.9E-05 54.9 6.3 169 576-770 314-491 (714)
387 TIGR02279 PaaC-3OHAcCoADH 3-hy 81.6 5.6 0.00012 49.3 9.4 33 178-211 5-37 (503)
388 cd00650 LDH_MDH_like NAD-depen 81.6 4.3 9.3E-05 45.7 7.8 72 181-273 1-79 (263)
389 PRK09496 trkA potassium transp 81.6 4.4 9.6E-05 49.0 8.5 94 573-699 229-322 (453)
390 PLN03096 glyceraldehyde-3-phos 81.6 1.5 3.3E-05 52.2 4.3 133 574-722 59-196 (395)
391 PRK12939 short chain dehydroge 81.5 3 6.6E-05 45.5 6.5 33 573-611 5-38 (250)
392 PRK06139 short chain dehydroge 81.5 2.6 5.5E-05 49.2 6.1 35 572-612 4-39 (330)
393 PRK08605 D-lactate dehydrogena 81.4 1.7 3.8E-05 50.8 4.7 36 572-613 143-179 (332)
394 PRK06057 short chain dehydroge 81.4 1.9 4.2E-05 47.6 4.9 36 572-613 4-40 (255)
395 TIGR01771 L-LDH-NAD L-lactate 81.3 3 6.5E-05 48.1 6.6 68 183-273 1-73 (299)
396 TIGR00518 alaDH alanine dehydr 81.3 2.6 5.7E-05 50.0 6.3 35 176-211 165-199 (370)
397 PTZ00082 L-lactate dehydrogena 81.3 1.4 2.9E-05 51.4 3.8 36 573-613 4-39 (321)
398 TIGR01327 PGDH D-3-phosphoglyc 81.3 1.8 3.8E-05 53.9 5.0 35 572-612 135-169 (525)
399 PRK06940 short chain dehydroge 81.2 3.2 6.9E-05 46.8 6.6 32 575-613 2-33 (275)
400 PRK10669 putative cation:proto 81.1 7.3 0.00016 48.8 10.4 90 178-295 417-512 (558)
401 PF02558 ApbA: Ketopantoate re 81.1 1.4 3.1E-05 44.8 3.5 29 578-612 1-29 (151)
402 PF02056 Glyco_hydro_4: Family 81.0 5 0.00011 43.1 7.5 109 577-712 1-113 (183)
403 PRK07576 short chain dehydroge 81.0 5.3 0.00011 44.6 8.2 39 172-211 3-42 (264)
404 PLN02240 UDP-glucose 4-epimera 80.9 5.5 0.00012 46.2 8.7 33 573-611 3-36 (352)
405 cd01337 MDH_glyoxysomal_mitoch 80.9 3.7 8E-05 47.7 7.1 73 180-273 2-77 (310)
406 PTZ00117 malate dehydrogenase; 80.8 1.5 3.1E-05 51.1 3.8 35 574-613 4-38 (319)
407 PRK08291 ectoine utilization p 80.6 4.7 0.0001 47.1 7.9 146 500-684 52-207 (330)
408 PRK13529 malate dehydrogenase; 80.6 0.91 2E-05 56.0 2.1 45 571-615 291-340 (563)
409 PRK06720 hypothetical protein; 80.5 4 8.7E-05 43.0 6.7 36 572-613 13-49 (169)
410 TIGR00036 dapB dihydrodipicoli 80.5 3.8 8.2E-05 46.5 6.9 97 577-710 3-102 (266)
411 PRK07792 fabG 3-ketoacyl-(acyl 80.5 3.1 6.8E-05 47.7 6.4 36 571-612 8-44 (306)
412 PRK15059 tartronate semialdehy 80.4 5 0.00011 46.1 7.9 108 180-301 2-121 (292)
413 PRK06181 short chain dehydroge 80.3 5.5 0.00012 44.1 8.0 31 576-612 2-33 (263)
414 TIGR02632 RhaD_aldol-ADH rhamn 80.3 4.7 0.0001 51.8 8.4 84 506-612 358-446 (676)
415 TIGR02622 CDP_4_6_dhtase CDP-g 80.2 4.6 0.0001 47.1 7.7 35 176-211 2-37 (349)
416 PRK08251 short chain dehydroge 80.2 9.6 0.00021 41.7 9.8 61 178-258 2-63 (248)
417 PRK12384 sorbitol-6-phosphate 80.1 4.9 0.00011 44.4 7.5 33 575-613 2-35 (259)
418 PLN02240 UDP-glucose 4-epimera 80.0 13 0.00027 43.2 11.3 34 176-210 3-37 (352)
419 TIGR03589 PseB UDP-N-acetylglu 80.0 4.4 9.5E-05 47.0 7.4 37 573-613 2-39 (324)
420 TIGR03466 HpnA hopanoid-associ 80.0 4.6 9.9E-05 46.0 7.5 31 577-613 2-33 (328)
421 PRK13403 ketol-acid reductoiso 80.0 1.7 3.7E-05 50.5 3.8 36 570-611 11-46 (335)
422 TIGR00137 gid_trmFO tRNA:m(5)U 79.9 1.6 3.4E-05 52.8 3.7 33 576-614 1-33 (433)
423 PRK07831 short chain dehydroge 79.9 8.6 0.00019 42.6 9.4 35 175-210 14-50 (262)
424 PRK08268 3-hydroxy-acyl-CoA de 79.8 6.5 0.00014 48.8 9.1 33 179-212 8-40 (507)
425 PRK10537 voltage-gated potassi 79.8 4.9 0.00011 48.2 7.8 37 574-616 239-275 (393)
426 PRK09880 L-idonate 5-dehydroge 79.8 10 0.00023 44.0 10.5 34 177-210 169-202 (343)
427 PRK12491 pyrroline-5-carboxyla 79.7 13 0.00029 42.3 10.9 80 178-285 2-84 (272)
428 PLN02688 pyrroline-5-carboxyla 79.7 7.8 0.00017 43.5 9.1 23 577-599 2-24 (266)
429 PRK12490 6-phosphogluconate de 79.7 4.7 0.0001 46.3 7.4 31 577-613 2-32 (299)
430 cd00704 MDH Malate dehydrogena 79.7 2.1 4.6E-05 49.9 4.6 33 179-211 1-40 (323)
431 PRK06125 short chain dehydroge 79.6 4.8 0.0001 44.6 7.3 35 573-613 5-40 (259)
432 TIGR00065 ftsZ cell division p 79.5 8.3 0.00018 45.5 9.5 113 169-300 8-140 (349)
433 PRK06138 short chain dehydroge 79.4 5.3 0.00011 43.7 7.5 34 573-612 3-37 (252)
434 PRK06522 2-dehydropantoate 2-r 79.4 1.7 3.8E-05 49.4 3.8 31 577-613 2-32 (304)
435 PRK12771 putative glutamate sy 79.3 6.3 0.00014 49.4 9.0 35 177-212 136-170 (564)
436 PRK12550 shikimate 5-dehydroge 79.2 1.9 4.1E-05 49.1 3.9 34 575-613 122-155 (272)
437 PLN02166 dTDP-glucose 4,6-dehy 79.2 9.2 0.0002 46.5 10.1 102 178-304 120-239 (436)
438 PLN00106 malate dehydrogenase 79.2 6.7 0.00015 45.8 8.5 74 177-271 17-93 (323)
439 PRK12826 3-ketoacyl-(acyl-carr 79.2 6.7 0.00014 42.7 8.2 36 175-211 3-39 (251)
440 PRK00421 murC UDP-N-acetylmura 79.2 4 8.6E-05 49.9 7.0 89 177-296 6-95 (461)
441 TIGR02853 spore_dpaA dipicolin 79.2 1.7 3.6E-05 49.9 3.5 35 573-613 149-183 (287)
442 PRK06249 2-dehydropantoate 2-r 79.2 1.7 3.7E-05 50.2 3.6 34 575-614 5-38 (313)
443 PRK07814 short chain dehydroge 79.1 4.3 9.3E-05 45.2 6.7 35 573-613 8-43 (263)
444 cd00762 NAD_bind_malic_enz NAD 79.0 1.4 3E-05 49.5 2.6 38 571-613 21-68 (254)
445 PRK06129 3-hydroxyacyl-CoA deh 79.0 8.2 0.00018 44.6 9.1 33 179-212 3-35 (308)
446 PRK06172 short chain dehydroge 79.0 5.1 0.00011 44.0 7.2 35 573-613 5-40 (253)
447 PF10727 Rossmann-like: Rossma 78.9 4.4 9.4E-05 40.9 6.0 82 177-286 9-90 (127)
448 PRK06476 pyrroline-5-carboxyla 78.9 8.3 0.00018 43.2 9.0 23 180-202 2-24 (258)
449 PRK03369 murD UDP-N-acetylmura 78.9 6.9 0.00015 48.3 9.0 89 177-296 11-99 (488)
450 PRK07326 short chain dehydroge 78.9 6.3 0.00014 42.7 7.8 34 573-612 4-38 (237)
451 cd05211 NAD_bind_Glu_Leu_Phe_V 78.9 2.6 5.6E-05 46.4 4.8 38 175-212 20-57 (217)
452 PRK14982 acyl-ACP reductase; P 78.9 1.7 3.7E-05 50.9 3.5 37 572-613 152-190 (340)
453 PRK03806 murD UDP-N-acetylmura 78.8 7.4 0.00016 47.1 9.1 123 176-332 4-126 (438)
454 PRK07231 fabG 3-ketoacyl-(acyl 78.8 7.6 0.00017 42.3 8.5 35 176-211 3-38 (251)
455 PRK03659 glutathione-regulated 78.8 4.2 9.1E-05 51.5 7.2 89 575-698 400-488 (601)
456 PLN02350 phosphogluconate dehy 78.8 7.6 0.00016 48.0 9.2 123 576-710 7-136 (493)
457 TIGR01772 MDH_euk_gproteo mala 78.7 3.7 7.9E-05 47.7 6.1 70 180-271 1-74 (312)
458 PRK14188 bifunctional 5,10-met 78.7 4.5 9.9E-05 46.6 6.8 77 572-708 155-232 (296)
459 TIGR03206 benzo_BadH 2-hydroxy 78.6 4.1 9E-05 44.5 6.3 35 573-613 1-36 (250)
460 KOG0024 Sorbitol dehydrogenase 78.6 5.1 0.00011 46.3 7.0 36 574-614 169-204 (354)
461 PRK06398 aldose dehydrogenase; 78.5 4.8 0.0001 44.8 6.8 75 572-656 3-79 (258)
462 PRK08374 homoserine dehydrogen 78.5 7.5 0.00016 45.7 8.7 109 576-706 3-122 (336)
463 TIGR03589 PseB UDP-N-acetylglu 78.4 16 0.00035 42.3 11.4 36 176-211 2-39 (324)
464 PRK05717 oxidoreductase; Valid 78.4 2.7 5.9E-05 46.4 4.8 36 572-613 7-43 (255)
465 PRK05225 ketol-acid reductoiso 78.4 4.2 9.1E-05 49.2 6.5 42 163-204 17-62 (487)
466 TIGR01850 argC N-acetyl-gamma- 78.3 4.6 9.9E-05 47.6 6.9 98 576-707 1-100 (346)
467 PLN02427 UDP-apiose/xylose syn 78.3 4.9 0.00011 47.6 7.2 35 572-612 11-47 (386)
468 PF10727 Rossmann-like: Rossma 78.3 7.1 0.00015 39.4 7.3 83 574-697 9-91 (127)
469 PRK12367 short chain dehydroge 78.2 2.3 5.1E-05 47.3 4.3 39 569-613 8-47 (245)
470 PRK00045 hemA glutamyl-tRNA re 78.2 1.8 3.9E-05 52.3 3.6 36 573-613 180-215 (423)
471 PRK13301 putative L-aspartate 78.2 2.6 5.7E-05 47.6 4.6 117 178-304 2-129 (267)
472 PRK07856 short chain dehydroge 78.2 5.6 0.00012 43.8 7.2 78 573-657 4-83 (252)
473 PTZ00317 NADP-dependent malic 78.1 1.3 2.9E-05 54.5 2.4 61 555-615 259-342 (559)
474 PF03949 Malic_M: Malic enzyme 78.1 2.7 5.8E-05 47.3 4.6 102 174-295 21-137 (255)
475 PRK12550 shikimate 5-dehydroge 78.1 3 6.6E-05 47.5 5.1 32 179-210 123-154 (272)
476 PRK07774 short chain dehydroge 78.0 2.7 5.9E-05 46.0 4.7 35 573-613 4-39 (250)
477 KOG0069 Glyoxylate/hydroxypyru 78.0 8.6 0.00019 45.0 8.8 87 171-289 155-244 (336)
478 PRK00676 hemA glutamyl-tRNA re 78.0 1.8 4E-05 50.6 3.4 35 571-610 170-204 (338)
479 PRK07634 pyrroline-5-carboxyla 77.9 6.9 0.00015 43.2 7.9 25 575-599 4-28 (245)
480 PLN02166 dTDP-glucose 4,6-dehy 77.8 6.7 0.00015 47.7 8.3 33 575-613 120-153 (436)
481 PRK05872 short chain dehydroge 77.8 6.6 0.00014 44.7 7.9 36 572-613 6-42 (296)
482 TIGR02441 fa_ox_alpha_mit fatt 77.8 1.9 4.1E-05 55.8 3.8 170 576-770 336-513 (737)
483 PLN02688 pyrroline-5-carboxyla 77.7 13 0.00027 41.8 10.0 76 180-284 2-81 (266)
484 PLN02427 UDP-apiose/xylose syn 77.6 13 0.00028 44.0 10.6 37 174-210 10-47 (386)
485 PRK00676 hemA glutamyl-tRNA re 77.6 2.9 6.2E-05 49.0 4.9 38 175-212 171-208 (338)
486 cd05211 NAD_bind_Glu_Leu_Phe_V 77.6 2.1 4.6E-05 47.0 3.6 38 572-614 20-57 (217)
487 PRK07453 protochlorophyllide o 77.6 5.3 0.00011 46.0 7.1 35 573-613 4-39 (322)
488 PRK12859 3-ketoacyl-(acyl-carr 77.6 6 0.00013 43.9 7.3 34 572-611 3-39 (256)
489 PRK12827 short chain dehydroge 77.5 5.7 0.00012 43.2 7.0 33 573-611 4-37 (249)
490 PRK12748 3-ketoacyl-(acyl-carr 77.5 4.2 9.1E-05 44.9 6.0 35 573-613 3-40 (256)
491 PF13460 NAD_binding_10: NADH( 77.4 8.5 0.00018 40.1 8.0 86 578-701 1-91 (183)
492 PRK13403 ketol-acid reductoiso 77.4 2.9 6.4E-05 48.6 4.8 37 173-210 11-47 (335)
493 PRK13581 D-3-phosphoglycerate 77.4 2.4 5.2E-05 52.7 4.4 35 572-612 137-171 (526)
494 PRK06035 3-hydroxyacyl-CoA deh 77.3 2.1 4.6E-05 48.9 3.7 33 576-614 4-36 (291)
495 PF01408 GFO_IDH_MocA: Oxidore 77.3 4.4 9.5E-05 39.4 5.4 84 577-703 2-90 (120)
496 TIGR01181 dTDP_gluc_dehyt dTDP 77.2 14 0.0003 41.7 10.3 31 180-210 1-33 (317)
497 TIGR01202 bchC 2-desacetyl-2-h 77.2 9 0.0002 44.0 8.8 82 177-289 144-225 (308)
498 COG1893 ApbA Ketopantoate redu 77.1 6.4 0.00014 45.6 7.5 23 576-598 1-23 (307)
499 PRK07097 gluconate 5-dehydroge 76.9 5.2 0.00011 44.5 6.6 35 572-612 7-42 (265)
500 PRK12861 malic enzyme; Reviewe 76.8 1.2 2.6E-05 57.2 1.6 42 571-615 185-226 (764)
No 1
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-265 Score=2279.89 Aligned_cols=1003 Identities=60% Similarity=1.018 Sum_probs=975.2
Q ss_pred CCCCCCCchhHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCC
Q 001074 148 LGNSNQTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDN 227 (1163)
Q Consensus 148 ~~~~~~~~~d~~rYdRQi~l~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~ 227 (1163)
.++....+||+++||||+|++|+++|+||..|+|||+|++|||.||||||+|+||+++||+|+..+.++||++|||++++
T Consensus 7 ~~~~a~~~IDE~LYSRQLYVlG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~ 86 (1013)
T KOG2012|consen 7 DGNSASQEIDESLYSRQLYVLGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEE 86 (1013)
T ss_pred ccCcchhhhhhhhhhhhhhhccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHH
Confidence 33444579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHhcCCCEEEEeecCCChhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEE
Q 001074 228 DIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVF 307 (1163)
Q Consensus 228 DiGk~Kaea~~~~L~eLNp~V~V~~~~~~l~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf 307 (1163)
|||++||+++.++|++||++|.|.++++.++++++++|+|||+|+.+.+.+.+||++||+++ |.||.++++|++|++|
T Consensus 87 DigknRA~as~~~LaeLN~yV~V~v~t~~~~~e~L~~FqvVVlt~~~le~q~~i~~fch~~~--i~fi~ad~RGLfg~lF 164 (1013)
T KOG2012|consen 87 DIGKNRAEASVEKLAELNNYVPVVVLTGPLTEEFLSDFQVVVLTDASLEEQLKINDFCHSHG--IAFIAADTRGLFGQLF 164 (1013)
T ss_pred hcCCchHHHHHHHHHHhhcceeeEEecCcccHHHHhCCcEEEEecCchHHHHHHHHHHHhcC--eEEEEeccchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred EEcCCceEEEcCCCCCCcceeecccccCCCceeecccccccccccCCeeEEEeeccccccCCCCCccccccCcceeeecc
Q 001074 308 CDFGPEFTVVDVDGEDPHTGIIASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEE 387 (1163)
Q Consensus 308 ~d~g~~f~v~d~~ge~p~~~~I~~I~~~~~~lv~~~d~~rh~~~dgd~V~f~ev~gm~eln~~~~~~i~~~~~~~f~i~~ 387 (1163)
||||++|+|.|.+||+|.+++|++|++++|++|||+++.||+|+|||+|+|+||+||+++|+++|++|++++||+|+| +
T Consensus 165 CDFG~eF~v~D~tGeeP~t~mI~~Is~d~pGvvT~ld~~rH~lEdGd~V~FsEveGm~eLN~~~P~kI~v~~p~sf~I-g 243 (1013)
T KOG2012|consen 165 CDFGEEFTVLDPTGEEPLTGMIASISQDNPGVVTCLDGARHGFEDGDLVTFSEVEGMTELNDCKPRKITVLGPYSFSI-G 243 (1013)
T ss_pred ccCCCceEEeCCCCCcchhhHHhhccCCCCceEEEecCccccCccCCEEEEEeeccccccCCCCceEEEEecCceEEe-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred ccccccceeecceEEEeecCeeecccchHhhhcCCCCcccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Q 001074 388 DTTNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQK 467 (1163)
Q Consensus 388 Dt~~f~~y~~gg~~~qvk~p~~i~fksL~e~L~~p~~~l~~d~~k~~~~~~l~~~~~aL~~F~~~~gr~P~~~~~~Da~~ 467 (1163)
||+.|+.|.+||+++|||+|++++|+||+++|.+| +++.+|++|++||+++|++|+||++|.++|||+|.+++++|+++
T Consensus 244 dt~~f~~y~~GGi~tQVK~Pk~isfKsL~~~L~~P-~fl~~df~k~~rp~~lH~af~AL~~F~~~~Gr~P~p~~e~DA~~ 322 (1013)
T KOG2012|consen 244 DTTEFGEYKKGGIFTQVKVPKTISFKSLREALKEP-EFLISDFAKFDRPPQLHLAFQALHQFQEAHGRLPRPGNEEDAEE 322 (1013)
T ss_pred cccchhhhhcCceeEEeecCceEecccHHHhhcCC-CeeeeccccccccHHHHHHHHHHHHHHHHhCCCCCCCChhhHHH
Confidence 79999999999999999999999999999999999 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCHHHHHHHHhhcccccCchhhHhhhhhhHHHHHhhcCCcccceeeeeeeccCCCCCC--C
Q 001074 468 LISVATNINESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLPTE--P 545 (1163)
Q Consensus 468 l~~ia~~i~~~~~~~~~~~i~~~li~~~~~~~~~el~PvaA~iGGiaAQEVIKaiTgkf~PI~q~~~fD~ie~Lp~~--~ 545 (1163)
|++++..+.+..+ ...++++++|++|++.+++.|.||+|++||+|||||+|+|||||+||.||||||++|+||.+ +
T Consensus 323 l~~l~~~i~~~~~--~~~~vde~Lir~~s~~a~g~L~pm~A~~GG~vaQEvlKa~sgKF~PL~Q~lYfDale~LP~d~~~ 400 (1013)
T KOG2012|consen 323 LVELARDISEGLG--LEEDVDEKLIRHFSFSARGDLNPMVAFFGGIVAQEVLKACSGKFTPLKQWLYFDALESLPSDNLP 400 (1013)
T ss_pred HHHHHHHhhhhcc--ccccchHHHHHHHHHhhccCcchHHHHHhhhhHHHHHHhhccCccchhHheehhhHhhCCCcCCC
Confidence 9999999988765 35689999999999999999999999999999999999999999999999999999999975 7
Q ss_pred CCCCCCCCccCchhhhhhhcCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccC
Q 001074 546 LDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFL 625 (1163)
Q Consensus 546 ~~~~~~~~~~~Rydrq~~l~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfL 625 (1163)
+++++++|.++|||.|+++||...|+||.++++|+|||||||||+|||||+|||+||..|+|+|+|||.||.||||||||
T Consensus 401 ~~e~d~~prgsRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFL 480 (1013)
T KOG2012|consen 401 PSEEDCQPRGSRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFL 480 (1013)
T ss_pred CCHHHcccccCccccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceee
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccchHHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEec
Q 001074 626 FRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLES 705 (1163)
Q Consensus 626 f~~~dIG~~Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~s 705 (1163)
||.+|||++||++||++++.|||+++|+++.++++++||++|+|+||++.|+|+|||||++||+|++++|+.+.|||++|
T Consensus 481 FR~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPLLES 560 (1013)
T KOG2012|consen 481 FRPWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPLLES 560 (1013)
T ss_pred ccccccCchHHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccceEEEeCCcccccCCCCCCCCCCCCCccccCCCCChhhHHHHHHHHhhhhccCChhhhhhccCCchhhhhhhh
Q 001074 706 GTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMA 785 (1163)
Q Consensus 706 gt~G~~G~v~viip~~t~~y~~~~dp~~~~~p~Ct~~~fP~~~~Hci~wAr~~F~~lF~~~~~~~n~~l~~~~~~~~~~~ 785 (1163)
||+|++|++||++|++||+|++++|||||++|+||+++||+.|||||+|||+.||++|.++++++|+||++|..+...++
T Consensus 561 GTlGTKGntQVvvPhlTEsY~SS~DPPEksiP~CTlknFPn~IeHTiqWAR~eFEg~F~~~~e~vN~yls~p~f~e~sl~ 640 (1013)
T KOG2012|consen 561 GTLGTKGNTQVVVPHLTESYGSSRDPPEKSIPVCTLKSFPNAIEHTIQWARDEFEGLFKQSAENVNKYLSDPVFYETSLK 640 (1013)
T ss_pred cCcCCccceeEEeccccccccccCCCcccCCceeeeccCchHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCchHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred hcCchhHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCccCCCCCCCccccCCC
Q 001074 786 NAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSA 865 (1163)
Q Consensus 786 ~~~~~~~~~~l~~~~~~l~~~~~~~~~dci~~a~~~f~~~F~~~I~~Ll~~~p~d~~t~~g~~fWs~~kr~P~pl~fd~~ 865 (1163)
..++++.++.|+++.+.|. .+|.+|+||++|||..|+++|+++|+|||++||+|++|++|+||||||||+|+||+||.+
T Consensus 641 ~~~~~~~~~~l~~v~~~l~-~rp~~~~dCv~warl~f~~~f~~~ikqLl~~FP~d~~t~~G~pFWs~pKr~P~pl~Fd~n 719 (1013)
T KOG2012|consen 641 LIGEPQSLETLERVVDCLS-ERPQNWQDCVEWARLHFEKYFHNRIKQLLHNFPPDAKTSDGAPFWSGPKRCPRPLEFDVN 719 (1013)
T ss_pred hccCcchhHHHHHHHHHhh-cCCccHHHHHHHHHHHHHHHhhHHHHHhhcCCCcccccCCCCcCCCCCCCCCCceeecCC
Confidence 8999999999999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHHHHHHHcCCCCCCCCCChHHHHHHhhhcCCCCcCCCCCcceecccccccccccCcCcHHHHHHHHHHH
Q 001074 866 DPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKL 945 (1163)
Q Consensus 866 ~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~i~~~e~~~~~~~~~~~~~~~~~~l~~~l 945 (1163)
|++|+.||++||+|||++|||+.. .+.+.++.++..+++|+|+|+++++|.+++.+....+++.|+.+.|++|...+
T Consensus 720 ~~~hl~fv~Aaa~l~a~~~gi~~~---~d~~~~~~~~~~v~~p~f~P~~~~~i~~~~~~~~~~~~s~d~~~~i~~l~~~l 796 (1013)
T KOG2012|consen 720 DPLHLNFVQAAANLRAEVYGIPGS---QDREALAELLERVIVPEFEPKQKVKIVVEEAELAASSASVDDSAAIDQLNKAL 796 (1013)
T ss_pred CchhHHHHHHHHHHHHHhcCCCcc---cCHHHhhhhHhhcCCCccccccCCeecccccccccccccCCchHHHHHHhhcc
Confidence 999999999999999999999984 56678999999999999999999999999988887778889999999999999
Q ss_pred HHhhhcCCCCCCcCCceeeccCCCCchhHHHHHHhhhhhhccCCCCccHHHHHHHhCcccchhhhhHHHHHHHHHHHHHH
Q 001074 946 EQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 1025 (1163)
Q Consensus 946 ~~~~~~~~~~~~~~p~~FeKDDd~n~hidFi~aasNlRa~ny~I~~~~~~~~k~iAG~IIPAIaTTtA~vaGl~~lEl~K 1025 (1163)
..+.. ..+++|.|+.||||||+|+|||||+|||||||+||+||++||+++|+|||+||||||||||+|+||+||||||
T Consensus 797 ~~~~~--~~~~~~~p~~FEKDDDsN~H~dfi~aasnlRA~nY~I~~adr~k~K~IaGkIIPAIATtTa~v~Glv~LElyK 874 (1013)
T KOG2012|consen 797 PSPSV--LPSFKMKPLDFEKDDDSNFHMDFITAASNLRAQNYSIPPADRLKTKRIAGKIIPAIATTTAAVSGLVCLELYK 874 (1013)
T ss_pred ccccc--CCCCceeeeeeccccccccchHHHHHHhhhhhhccCCCccchhhhheeeeeEEEEEeehhHHHHHHHHhhhhh
Confidence 88766 4458999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcccccccccccccCcccccCCCCCcccc-cCCcceeEEeEEEcCCCCcHHHHHHHHHHc-CCceeeeecCCce
Q 001074 1026 VLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIK-HRDMSWTVWDRWILKDNPTLRELIQWLKDK-GLNAYSISCGSCL 1103 (1163)
Q Consensus 1026 ~l~~~~~~~~~rn~f~nla~p~~~~~eP~~~~~~~-~~~~~~t~Wd~~~v~~~~TL~eli~~~~~k-~l~~~~I~~g~~l 1103 (1163)
++.|+.+++.|||+|+|||+|+|.++||.++++.. +.+.+||+||||++.+++||++|+++++++ |++++||++|+++
T Consensus 875 v~~G~~~~e~~Kn~flnLAlp~f~~~ep~~~pk~~~~~~~~~tlWdR~~v~g~~tL~~~L~~~~~~~gl~i~mls~G~~l 954 (1013)
T KOG2012|consen 875 VVDGKRPVEAYKNTFLNLALPFFSFAEPLAAPKVQYHNDLSWTLWDRWEVKGEPTLREFLDHLEEQHGLEITMLSQGVSL 954 (1013)
T ss_pred hccCCCchHHhhhhhhcccccceeecccCCCcceeeecccceeeeEEEEecCCCCHHHHHHHHhhhcCceEEEEecccee
Confidence 99998999999999999999999999999977766 456699999999999999999999999988 9999999999999
Q ss_pred eecCCCcchhhcccCcHHHHHHHhhccCCCCceeEEEEEEEeecCCCCccccCeEEEEe
Q 001074 1104 LFNSMFPRHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISIYF 1162 (1163)
Q Consensus 1104 lY~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~P~v~~~~ 1162 (1163)
||++|+|++++||+++++||++.++|+++|+++++|+|+++|+|+||+|+++|+|||+|
T Consensus 955 ly~~~~~k~~erl~~~v~elv~~~~k~~~~~~~~~lvle~~~~d~~~eDve~P~v~y~f 1013 (1013)
T KOG2012|consen 955 LYASFMPKHAERLPLRVTELVRDVTKKKLPPHVRHLVLEVACEDDDDEDVEVPPVRYYF 1013 (1013)
T ss_pred ehhhhhhHHHHhcCCcHHHHHHHHhcccCCCcceEEEEEEecCCCCCCcCCCCceEEeC
Confidence 99999999999999999999999999999999999999999999999999999999986
No 2
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=1.2e-232 Score=2165.66 Aligned_cols=1005 Identities=53% Similarity=0.891 Sum_probs=963.3
Q ss_pred chhHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHH
Q 001074 155 DIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRA 234 (1163)
Q Consensus 155 ~~d~~rYdRQi~l~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Ka 234 (1163)
++|++||||||++||.++|+||++++|||+|+||||+||||||+|+|||+|||+|++.|+++||+||||++++|||++||
T Consensus 1 ~id~~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Ka 80 (1008)
T TIGR01408 1 EIDEALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRA 80 (1008)
T ss_pred CchHhhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeecCCChhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEcCCce
Q 001074 235 LASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEF 314 (1163)
Q Consensus 235 ea~~~~L~eLNp~V~V~~~~~~l~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf~d~g~~f 314 (1163)
++++++|++|||+|+|++....++++++++||+||+|+++.+.+..+|++||+++++||||++++.|++|++|+|||++|
T Consensus 81 ea~~~~L~eLNp~V~V~~~~~~l~~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G~vf~D~g~~f 160 (1008)
T TIGR01408 81 EAVVKKLAELNPYVHVSSSSVPFNEEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRGLFGSLFCDFGDEF 160 (1008)
T ss_pred HHHHHHHHHHCCCceEEEecccCCHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecceEEEEEecCCCce
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred EEEcCCCCCCcceeecccccCCCceeecccccccccccCCeeEEEeeccccccCCCCCccccccCcceeeeccccccccc
Q 001074 315 TVVDVDGEDPHTGIIASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTNYGT 394 (1163)
Q Consensus 315 ~v~d~~ge~p~~~~I~~I~~~~~~lv~~~d~~rh~~~dgd~V~f~ev~gm~eln~~~~~~i~~~~~~~f~i~~Dt~~f~~ 394 (1163)
.+.|.+|+.|.+++|.+|+++++++|+++++.+|++++||+|+|+||+||+++|++++++|++.++|+|+| +|++.|++
T Consensus 161 ~~~d~~ge~p~~~~i~~i~~~~~g~Vt~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~i~~~~~~~f~i-~dt~~~~~ 239 (1008)
T TIGR01408 161 EVLDTDGEEPKTGFIASITQANPGIVTCLENHRHKLETGDFVTFREVNGMTGLNDGSPRKITVISPYSFSI-GDTTELGP 239 (1008)
T ss_pred EEEeCCCCCCCcccccccccCCCceEEeecCcccCCcCCCEEEEeecccccccCCCCceeEEecCCceEEe-ccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 59999999
Q ss_pred eeecceEEEeecCeeecccchHhhhcCCCCcccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Q 001074 395 YVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATN 474 (1163)
Q Consensus 395 y~~gg~~~qvk~p~~i~fksL~e~L~~p~~~l~~d~~k~~~~~~l~~~~~aL~~F~~~~gr~P~~~~~~Da~~l~~ia~~ 474 (1163)
|.+||+++|+|+|+.++|+||+++|.+| +++.+||.|+++++++|++|+||++|.++|||+|.+++++|++++++++++
T Consensus 240 y~~gG~~~qvK~p~~~~Fksl~~~l~~p-~~~~~d~~k~~r~~~lh~~~~aL~~f~~~~g~~P~~~~~~d~~~~~~~a~~ 318 (1008)
T TIGR01408 240 YLHGGIATQVKTPKTVFFKSLREQLKDP-KCLIVDFSKPERPPEIHTAFQALDQFQEKYSRKPNVGCQQDAEELLKLATS 318 (1008)
T ss_pred hhcCceEEEEeccccccccCHHHHHcCC-cccccchhhcCCchhHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 799999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCHHHHHHHHhhcccccCchhhHhhhhhhHHHHHhhcCCcccceeeeeeeccCCCCCC-CCCCCCCCC
Q 001074 475 INESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLPTE-PLDSTEFKP 553 (1163)
Q Consensus 475 i~~~~~~~~~~~i~~~li~~~~~~~~~el~PvaA~iGGiaAQEVIKaiTgkf~PI~q~~~fD~ie~Lp~~-~~~~~~~~~ 553 (1163)
++++.+.. .+++++++++.|+++++++++||||++||++||||||+|||||+||+||||||++++||.. .+..+++.+
T Consensus 319 i~~~~~~~-~~~lde~li~~~~~~~~geisPv~Ai~GGi~aQEViKaisgKf~Pi~q~~~~D~~e~l~~~~~~~~~~~~~ 397 (1008)
T TIGR01408 319 ISETLEEK-VPDVDAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLKAVTGKFSPLCQWFYFDSAESLPSLGKPECEEFLP 397 (1008)
T ss_pred HHHhcCCC-cccCCHHHHHHHHHhccccccHHHHHhchHHHHHHHHHhcCCCCCceeeEEeehhhhCCcccCcchhhccc
Confidence 99876542 3569999999999999999999999999999999999999999999999999999999975 344557788
Q ss_pred ccCchhhhhhhcCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccc
Q 001074 554 INSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 633 (1163)
Q Consensus 554 ~~~Rydrq~~l~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~ 633 (1163)
.++||+||+++||.++|++|++++|+||||||||||++|+||++||+||++|+|+|+|+|+||.|||||||||+.+|||+
T Consensus 398 ~~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk 477 (1008)
T TIGR01408 398 RGDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGK 477 (1008)
T ss_pred hhhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCcccc
Q 001074 634 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 713 (1163)
Q Consensus 634 ~Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G~ 713 (1163)
+||++|+++++++||+++|+++..+++++++++|+++||+++|+||+|+||+++|+|++++|+.+++|||++|+.|++|+
T Consensus 478 ~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G~ 557 (1008)
T TIGR01408 478 PKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKGN 557 (1008)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCceee
Confidence 99999999999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCcccccCCCCCCCCCCCCCccccCCCCChhhHHHHHHHHhhhhccCChhhhhhccCCchhhhhhhhhcCchhHH
Q 001074 714 TQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQAR 793 (1163)
Q Consensus 714 v~viip~~t~~y~~~~dp~~~~~p~Ct~~~fP~~~~Hci~wAr~~F~~lF~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~ 793 (1163)
+++++|++|+||.|+++|+++++|+||+++||+.++|||+|||++|+++|++.|+++|+|+++|.+|.+++.+.+..+.+
T Consensus 558 v~v~ip~~te~y~~~~d~~~~~~P~Ctl~~~P~~~~h~i~wa~~~f~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1008)
T TIGR01408 558 TQVVVPHLTESYGSSRDPPEKEIPFCTLKSFPAAIEHTIQWARDKFEGLFSHKPSLVNKYLSSPSSAEEVLQKIQSGHSR 637 (1008)
T ss_pred EEEEeCCCcCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHhhHHHHHHHhhChHHHHHHHHhcCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888777788
Q ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCccCCCCCCCccccCCCCCcchhHH
Q 001074 794 DNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFV 873 (1163)
Q Consensus 794 ~~l~~~~~~l~~~~~~~~~dci~~a~~~f~~~F~~~I~~Ll~~~p~d~~t~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi 873 (1163)
+.|+.+++.|...+|.+|+|||+|||.+|+++|+++|+|||++||+|++|++|+||||||||+|+||+||.+|++|++||
T Consensus 638 ~~l~~i~~~l~~~~p~~~~~cv~~a~~~f~~~F~~~I~qLl~~fP~d~~~~~G~~fWs~~kr~P~pl~Fd~~~~~h~~Fi 717 (1008)
T TIGR01408 638 EGLEQIIKLLSKEKPRNFSQCVEWARLKFEKYFNNKALQLLHCFPLDIRTSTGSPFWSSPKRPPSPLKFDLNEPLHLSFI 717 (1008)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCccccCCCCCCCceeeCCCCHHHHHHH
Confidence 89999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCChHHHHHHhhhcCCCCcCCCCCcceecccccccccccCcCcHHHHHHHHHHHHHhhhcCC
Q 001074 874 MAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLP 953 (1163)
Q Consensus 874 ~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~i~~~e~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 953 (1163)
.+||+|||.+|||+.++++.+.+.++++++++.+|+|+|++++++..+|++.+.+..+.++.+.++.+.++|...... .
T Consensus 718 ~aaanL~A~~ygi~~~~~~~~~~~~~~~~~~~~vp~f~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~ 796 (1008)
T TIGR01408 718 QAAAKLYATVYGIPFAEEDLSADALLNILSEVKIPEFKPRSNKKIQTDETARKPDTAPEDDRNAIFQLEKAILSNEAT-K 796 (1008)
T ss_pred HHHHHHHHHHhCCCCccccchHHHHHHHHhcCCCCCCCCCcCceeecChhhhcccccccchHHHHHHHHHHhhccccc-c
Confidence 999999999999998766556688999999999999999999999998877655433344567788888877765431 1
Q ss_pred CCCCcCCceeeccCCCCchhHHHHHHhhhhhhccCCCCccHHHHHHHhCcccchhhhhHHHHHHHHHHHHHHHhcCCCCc
Q 001074 954 SGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKL 1033 (1163)
Q Consensus 954 ~~~~~~p~~FeKDDd~n~hidFi~aasNlRa~ny~I~~~~~~~~k~iAG~IIPAIaTTtA~vaGl~~lEl~K~l~~~~~~ 1033 (1163)
.++++.|++||||||+|+|||||+|||||||+||+||++|||++|+||||||||||||||+||||||||+||++++.+++
T Consensus 797 ~~~~~~p~~FeKDDd~n~HidFI~AasNLRA~nY~I~~~d~~~~K~iAG~IIPAiATTTA~vaGLv~lEl~Kv~~~~~~i 876 (1008)
T TIGR01408 797 SDFRMAPLSFEKDDDHNGHIDFITAASNLRAKNYSIEPADRFKTKFIAGKIIPAIATSTATVSGLVCLELIKVTDGGYKF 876 (1008)
T ss_pred CCCCCCceeeccCCCcchHHHHHHHHHhhHHHhcCCCcccHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHhccccH
Confidence 23789999999999999999999999999999999999999999999999999999999999999999999999997789
Q ss_pred ccccccccccccCcccccCCCCCcccccCCcce-eEEeEEEcCCCCcHHHHHHHHHHc-CCceeeeecCCceeecCCCcc
Q 001074 1034 EDYRNTFANLALPLFSMAEPVPPKVIKHRDMSW-TVWDRWILKDNPTLRELIQWLKDK-GLNAYSISCGSCLLFNSMFPR 1111 (1163)
Q Consensus 1034 ~~~rn~f~nla~p~~~~~eP~~~~~~~~~~~~~-t~Wd~~~v~~~~TL~eli~~~~~k-~l~~~~I~~g~~llY~~~~~~ 1111 (1163)
+.|||+|+|||+|+|.|+||.||++.++.++.| |+||||++.+++||+||+++|+++ |+++.||++|+++||++|+++
T Consensus 877 ~~~kn~f~nlalp~~~~seP~~~~~~~~~~~~~~t~WDr~~i~~~~Tl~~~i~~~~~~~~~~v~~is~g~~~lY~~~~~~ 956 (1008)
T TIGR01408 877 EVYKNCFLNLAIPLFVFTEPTEVRKTKIRNGISFTIWDRWTLHGDFTLLEFINAVKEKYGLEPTMVSQGVKLLYVPVMPG 956 (1008)
T ss_pred HHHhHHHHhhccccccccCCCCCCceeecCceeccceEEEEecCCCcHHHHHHHHHHHhCCeeEEEEcCceEEEeccchh
Confidence 999999999999999999999999998888899 999999999899999999999999 999999999999999999988
Q ss_pred hhhcccCcHHHHHHHhhccCCCCceeEEEEEEEeecCCCCccccCeEEEEeC
Q 001074 1112 HKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISIYFR 1163 (1163)
Q Consensus 1112 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~P~v~~~~~ 1163 (1163)
+++||+++|+||+++++++++|++++||+|+++|+|+||+||++|+|+|+||
T Consensus 957 ~~erl~~~l~el~~~~~k~~~~~~~~~l~~~~~~~d~~~~dv~~P~v~~~~~ 1008 (1008)
T TIGR01408 957 HAERLKLKMHKLVKPTTKKKLPPYRVHLTVSFACDDDGDEDVPGPPVRIYFS 1008 (1008)
T ss_pred hHHhcCCCHHHHHHHhccCCCCCCceEEEEEEEeecCCCCcccCCeEEEEeC
Confidence 8999999999999999999999999999999999999999999999999986
No 3
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=100.00 E-value=2.3e-119 Score=1045.21 Aligned_cols=430 Identities=61% Similarity=1.086 Sum_probs=413.8
Q ss_pred cEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEEEEe
Q 001074 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 656 (1163)
Q Consensus 577 kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~~~~ 656 (1163)
||+||||||+|||++|+||++||+||++|+|+|+|+|+||.|||||||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCcccceEEEeCCcccccCCCCCCCCCCC
Q 001074 657 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQA 736 (1163)
Q Consensus 657 ~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G~v~viip~~t~~y~~~~dp~~~~~ 736 (1163)
.+++++++++|+++||+++|+||+|+||+++|++++++|+.+++|+|++|+.|++|++++++|++|+||.|..+|+++.+
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~iP~~te~y~~~~~p~~~~~ 160 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRDPPEKSI 160 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEeCCCCCCccCCCCCCCCCC
Confidence 99999888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCChhhHHHHHHHHhhhhccCChhhhhhccCCchhhhhhhhhcCchhHHHHHHHHHHHhhhhcccchHHHHH
Q 001074 737 PMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCIT 816 (1163)
Q Consensus 737 p~Ct~~~fP~~~~Hci~wAr~~F~~lF~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~dci~ 816 (1163)
|+||+++||+.++|||+|||++|+++|++.++++|+|+ |+||++
T Consensus 161 P~Ctl~~~P~~~eHcI~wA~~~F~~lF~~~~~~~~~~~------------------------------------~~~c~~ 204 (435)
T cd01490 161 PLCTLKNFPNAIEHTIQWARDEFEGLFKQPPENVNQYL------------------------------------FEDCVR 204 (435)
T ss_pred CCccccCCCCCchHHHHHHHHHHHHHhccchHHHHHhh------------------------------------HHHHHH
Confidence 99999999999999999999999999999887766443 689999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccccccCCCCCccCCCCCCCccccCCCCCcchhHHHHHHHHHHHHcCCCCCCCCCChH
Q 001074 817 WARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPK 896 (1163)
Q Consensus 817 ~a~~~f~~~F~~~I~~Ll~~~p~d~~t~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~ 896 (1163)
||+.+|+++|+++|+|||++||+|+++++|++||+|+||+|+|++||++|+.|+.||.++|+|+|++||++
T Consensus 205 ~a~~~f~~~F~~~I~~ll~~~p~d~~~~~g~~fw~~~kr~P~p~~fd~~~~~h~~fv~~~a~l~a~~~~~~--------- 275 (435)
T cd01490 205 WARLLFEKYFNNNIKQLLHNFPPDAVTSDGAPFWSGPKRCPTPLEFDVNNPLHLDFVLAAANLYAEVYGIP--------- 275 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccccccccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999988752
Q ss_pred HHHHHhhhcCCCCcCCCCCcceecccccccccccCcCcHHHHHHHHHHHHHhhhcCCCCCCcCCceeeccCCCCchhHHH
Q 001074 897 MLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMI 976 (1163)
Q Consensus 897 ~~~~~~~~~~~~~f~~~~~~~i~~~e~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~p~~FeKDDd~n~hidFi 976 (1163)
.||||||+|+|||||
T Consensus 276 -----------------------------------------------------------------~FeKDdd~n~h~~fi 290 (435)
T cd01490 276 -----------------------------------------------------------------GFEKDDDTNFHMDFI 290 (435)
T ss_pred -----------------------------------------------------------------ccccCCchhHHHHHH
Confidence 099999999999999
Q ss_pred HHHhhhhhhccCCCCccHHHHHHHhCcccchhhhhHHHHHHHHHHHHHHHhcCCCCcccccccccccccCcccccCCCCC
Q 001074 977 AGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPP 1056 (1163)
Q Consensus 977 ~aasNlRa~ny~I~~~~~~~~k~iAG~IIPAIaTTtA~vaGl~~lEl~K~l~~~~~~~~~rn~f~nla~p~~~~~eP~~~ 1056 (1163)
+|||||||+||+|+++||+++|+|||||||||||||||||||+|+|+||+++++.+++.|||+|+|||+|+|.|+||.+|
T Consensus 291 ~a~snlRa~~y~I~~~~~~~~k~iag~IIPAiaTT~aivagl~~~e~~K~~~~~~~~~~~~n~~~nla~p~~~~~~p~~~ 370 (435)
T cd01490 291 TAASNLRARNYSIPPADRHKTKRIAGKIIPAIATTTAAVTGLVCLELYKVVDGKRPLEAYKNAFLNLALPFFAFSEPIPA 370 (435)
T ss_pred HHhhhhHHHHcCCCccCHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHhCCccHHHcchHhhhccCCccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999878999999999999999999999999
Q ss_pred ccccc-CCcceeEEeEEEcCCCCcHHHHH-HHHHHc-CCceeeeecCCceeecCCCc--chhhcc
Q 001074 1057 KVIKH-RDMSWTVWDRWILKDNPTLRELI-QWLKDK-GLNAYSISCGSCLLFNSMFP--RHKERM 1116 (1163)
Q Consensus 1057 ~~~~~-~~~~~t~Wd~~~v~~~~TL~eli-~~~~~k-~l~~~~I~~g~~llY~~~~~--~~~~~l 1116 (1163)
++.++ .+.+||+||||++.+++||++|+ ++|+++ |+++.||++|+++||++|+| ++++||
T Consensus 371 ~~~~~~~~~~~t~Wdr~~v~~~~t~~~~~~~~~~~~~~~~v~~i~~g~~~ly~~~~~~~~~~~r~ 435 (435)
T cd01490 371 PKVKYAYDEEWTIWDRFEVKGKQTLQELLIDYFKEKYGLEVTMLSQGVSMLYSSFMPPAKLKERL 435 (435)
T ss_pred CccccCCCCEEeeEeEEEEcCCCcHHHHHHHHHHHHhCCeEEEEEeCCeEEEeecCCchhhhhcC
Confidence 98886 78899999999999999999999 999999 99999999999999999986 345553
No 4
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-79 Score=684.58 Aligned_cols=472 Identities=30% Similarity=0.473 Sum_probs=347.0
Q ss_pred HHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhC
Q 001074 568 KLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSIN 647 (1163)
Q Consensus 568 ~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~n 647 (1163)
+.++.+.++|||||||||||||+||+||++|+ ++|+|||+|+|++||||||||||.+|||++||.||++.++++|
T Consensus 5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf-----~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fn 79 (603)
T KOG2013|consen 5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGF-----EEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFN 79 (603)
T ss_pred HHHHHhccCeEEEEecCcccHHHHHHHHHhcC-----CeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhC
Confidence 46788899999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCcccceEEEeCCcccccCC
Q 001074 648 PRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGA 727 (1163)
Q Consensus 648 p~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G~v~viip~~t~~y~~ 727 (1163)
|.+++.+|+..+.+. -|+.+||.+||+|+|||||.+||+|||++|....+|||+|||.|+.|++++++++.||||.|
T Consensus 80 pn~~l~~yhanI~e~---~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC 156 (603)
T KOG2013|consen 80 PNIKLVPYHANIKEP---KFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVIIKGKTECYEC 156 (603)
T ss_pred CCCceEeccccccCc---chHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEecCCcceecc
Confidence 999999999998753 37789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccCCCCChhhHHHHHHH-HhhhhccCChhhh--hhccCCchhhhhhh-hhcC-chhHHHHHHHHHHH
Q 001074 728 SRDPPEKQAPMCTVHSFPHNIDHCLTWARS-EFEGLLEKTPAEV--NAYLSNPVEYTTSM-ANAG-DAQARDNLERVLEC 802 (1163)
Q Consensus 728 ~~dp~~~~~p~Ct~~~fP~~~~Hci~wAr~-~F~~lF~~~~~~~--n~~l~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~ 802 (1163)
.+.|.++.+|+||+||.|+.++|||+|||+ +|.++|+.....- +-.-.||..-.... .... .....+..++ +
T Consensus 157 ~pK~~~kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~~d~~~q~~~~d~~d~d~~e~~t~~~~~~~~et~d~~Er-~-- 233 (603)
T KOG2013|consen 157 IPKPVPKTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFGEDDDDQYGRHDNADPDNCEDMTEEEAEAFRETEDLKER-R-- 233 (603)
T ss_pred cCCCCCCcCCceEeecCCCCceeeeeehHhHHHHHHhccccccccccccccCchhhhccChhhhhhhccchHHHHH-H--
Confidence 999999999999999999999999999995 6999998744321 00011222111110 0000 0000111111 0
Q ss_pred hhhhcccchHHHHHHH-------HHHHHHHHHHHHHHHhhcCCccccccCCCCCccCCCCCCCccccCCCCCcchhHHHH
Q 001074 803 LDKEKCEIFQDCITWA-------RLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMA 875 (1163)
Q Consensus 803 l~~~~~~~~~dci~~a-------~~~f~~~F~~~I~~Ll~~~p~d~~t~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi~~ 875 (1163)
+.-++|. ..+|.++|.++|..|+. +..-|.. +++|.||.|...-+.-..
T Consensus 234 ---------~~i~~~~~~~~~~~~~i~~klF~~dI~yl~~----------~e~~wk~-r~~p~pl~~~~~i~~~~~---- 289 (603)
T KOG2013|consen 234 ---------ESIVEIDKNLDFGPFKIFNKLFIYDIEYLLG----------MEALWKP-RSRPVPLSIAEVISTSLE---- 289 (603)
T ss_pred ---------HHHHHHhhccCCChhhhhhHHHHHHHHHHHh----------hhhhccC-CCCCCCcchhhccCCccc----
Confidence 1112232 45899999999999997 4678986 778999998753221110
Q ss_pred HHHHHHHHcCCCCCCCCCChHHHHHHhhhcCCCCcCCCCCcceecccccccccccCcCcHHHHHHHHHHHHHhhhcCCCC
Q 001074 876 ASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSG 955 (1163)
Q Consensus 876 ~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~i~~~e~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 955 (1163)
.+...++.+ +. +.. .+...|..++. ..++...++.|.-.. +..
T Consensus 290 ---------------------t~ns~~q~~--~~--a~~-----~~~~v~~v~~~----~~vf~~~i~~l~~~~---~~~ 332 (603)
T KOG2013|consen 290 ---------------------TINSIVQSI--TS--AQL-----NDQNVWTVDEG----AVVFRLSIQALDLRC---PKE 332 (603)
T ss_pred ---------------------cccchhhhc--cc--ccc-----CCcceeeeccc----cHHHHHHHHHhcccC---Ccc
Confidence 000011100 00 000 01222322211 112222222321111 111
Q ss_pred CCcCCceeeccCCCCchhHHHHHHhhhhhhccCCCCccHHHHHHHhCcccchhhhhHHHHHHHHHHHHHHHhcCCCCccc
Q 001074 956 FRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLED 1035 (1163)
Q Consensus 956 ~~~~p~~FeKDDd~n~hidFi~aasNlRa~ny~I~~~~~~~~k~iAG~IIPAIaTTtA~vaGl~~lEl~K~l~~~~~~~~ 1035 (1163)
..---+.|+|||.+ .|+||+||||+||+.|+||..+.|++|.||||||||||||||+|||++|+|.+|+|.+ ++.+
T Consensus 333 ~~h~~l~fdKdd~~--~~~FVaaaaNiRa~if~ipmkS~Fdik~mAgnIipaIAtTNAiIagliv~eaiKvl~~--~~~~ 408 (603)
T KOG2013|consen 333 SDHWYLIFDKDDAS--TMEFVAAAANIRAHIFGIPMKSLFDIKQMAGNIIPAIATTNAIIAGLIVTEAIKVLGG--DFDD 408 (603)
T ss_pred CCCceEEEcCCcHH--HHHHHHHHhhhhhhhhccchhhhhchHhHhcccchhhhhhhhHHHHHHHHHHHHHhcc--chhc
Confidence 11223799999987 8999999999999999999999999999999999999999999999999999999976 4788
Q ss_pred ccccccccccC-------cccccCCCCCcccccCCcceeEEeEEEcC-CCCcHHHHHHHH-HHc-CCceeeeec-CCcee
Q 001074 1036 YRNTFANLALP-------LFSMAEPVPPKVIKHRDMSWTVWDRWILK-DNPTLRELIQWL-KDK-GLNAYSISC-GSCLL 1104 (1163)
Q Consensus 1036 ~rn~f~nla~p-------~~~~~eP~~~~~~~~~~~~~t~Wd~~~v~-~~~TL~eli~~~-~~k-~l~~~~I~~-g~~ll 1104 (1163)
.+++|++-... ...+.+|.|.++.+.... -.+.+. ..+||..|+|.+ +.+ ++ .+.++. ...++
T Consensus 409 ~~~~f~~~~~n~r~r~l~~~~~~~PNp~C~vCs~~~-----~~l~ln~~~~~~~~L~D~ivk~r~~~-~pdvsll~~~Li 482 (603)
T KOG2013|consen 409 CNMIFLAKRPNPRKRVLLPWALRPPNPNCPVCSEVP-----LVLELNTRKSTLRDLVDKIVKTRLGY-LPDVSLLDDDLI 482 (603)
T ss_pred ceeeEEccCCCccceeecccccCCCCCCCccccccc-----eEEEeccccchHHHHHHHHHHHHhcc-Ccccchhhhhhc
Confidence 89998753322 234556666665542222 123333 378999999976 555 77 334432 24566
Q ss_pred ecCCCcchhhcccCcHHHHH
Q 001074 1105 FNSMFPRHKERMDKKVVDLA 1124 (1163)
Q Consensus 1105 Y~~~~~~~~~~l~~~l~~l~ 1124 (1163)
|+. ..+++++|+|+||.
T Consensus 483 ~~~---d~e~n~~k~lsel~ 499 (603)
T KOG2013|consen 483 DDM---DFEDNLDKTLSELG 499 (603)
T ss_pred ccc---cchhhhhhhHHhhC
Confidence 653 56799999999994
No 5
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=1.7e-74 Score=649.23 Aligned_cols=304 Identities=39% Similarity=0.661 Sum_probs=281.1
Q ss_pred cEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEEEEe
Q 001074 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 656 (1163)
Q Consensus 577 kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~~~~ 656 (1163)
||+||||||+|||++|+||++|| |+|+|+|+|.||.|||||||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv-----g~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~ 75 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF-----GEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYH 75 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC-----CeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCcccceEEEeCCcccccCCCCCCCCCCC
Q 001074 657 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQA 736 (1163)
Q Consensus 657 ~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G~v~viip~~t~~y~~~~dp~~~~~ 736 (1163)
.++.+. .++.+||+++|+||+|+||.++|++++++|+.+++|+|++|+.|++|++++++|+.|+||.|..+++++++
T Consensus 76 ~~i~~~---~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~ 152 (312)
T cd01489 76 ANIKDP---DFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTF 152 (312)
T ss_pred ccCCCc---cchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcC
Confidence 988753 35678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCChhhHHHHHHHHhhhhccCChhhhhhccCCchhhhhhhhhcCchhHHHHHHHHHHHhhhhcccchHHHHH
Q 001074 737 PMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCIT 816 (1163)
Q Consensus 737 p~Ct~~~fP~~~~Hci~wAr~~F~~lF~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~dci~ 816 (1163)
|+||++++|+.++|||+|||++|+
T Consensus 153 pictI~~~p~~~~hci~~a~~~f~-------------------------------------------------------- 176 (312)
T cd01489 153 PVCTIRSTPSQPIHCIVWAKSLFF-------------------------------------------------------- 176 (312)
T ss_pred CcceecCCCCCCEeehhHHHHHHH--------------------------------------------------------
Confidence 999999999999999999999875
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccccccCCCCCccCCCCCCCccccCCCCCcchhHHHHHHHHHHHHcCCCCCCCCCChH
Q 001074 817 WARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPK 896 (1163)
Q Consensus 817 ~a~~~f~~~F~~~I~~Ll~~~p~d~~t~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~ 896 (1163)
+|+++|+++|+||+++ ++||+++| +|+|++|+.
T Consensus 177 ----~~~~~f~~~i~~l~~~----------~~~w~~~~-~p~p~~~~~-------------------------------- 209 (312)
T cd01489 177 ----LFNKVFKDDIERLLSM----------EELWKTRK-PPVPLSWKE-------------------------------- 209 (312)
T ss_pred ----HHHHHHHHHHHHHHhh----------hhhhcCCC-CCCCCCCCC--------------------------------
Confidence 5889999999999975 78999977 899987652
Q ss_pred HHHHHhhhcCCCCcCCCCCcceecccccccccccCcCcHHHHHHHHHHHHHhhhcCCCCCCcCCceeeccCCCCchhHHH
Q 001074 897 MLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMI 976 (1163)
Q Consensus 897 ~~~~~~~~~~~~~f~~~~~~~i~~~e~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~p~~FeKDDd~n~hidFi 976 (1163)
++|||||++ ||+||
T Consensus 210 ----------------------------------------------------------------~~fdkDd~~--~~~~v 223 (312)
T cd01489 210 ----------------------------------------------------------------LTFDKDDQD--ALDFV 223 (312)
T ss_pred ----------------------------------------------------------------cCcCCCCHH--HHHHH
Confidence 248999997 99999
Q ss_pred HHHhhhhhhccCCCCccHHHHHHHhCcccchhhhhHHHHHHHHHHHHHHHhcCCCCcccccccccccccC----cccccC
Q 001074 977 AGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALP----LFSMAE 1052 (1163)
Q Consensus 977 ~aasNlRa~ny~I~~~~~~~~k~iAG~IIPAIaTTtA~vaGl~~lEl~K~l~~~~~~~~~rn~f~nla~p----~~~~~e 1052 (1163)
+|+|||||+||+||..+++++|+|||||||||||||||||||+++|++|++.+. .+.|||+|+|+.-+ ++...+
T Consensus 224 ~~~a~lRa~~f~I~~~~~~~~k~i~g~IiPaiatTnaivag~~~~e~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 301 (312)
T cd01489 224 AAAANLRSHVFGIPMKSRFDIKQMAGNIIPAIATTNAIIAGLIVLEALKVLSGD--KEQCRTVFLNLQPNRRKRLLVPCK 301 (312)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhhh--HHHhhhHhhhcccCCCCcEecCCC
Confidence 999999999999999999999999999999999999999999999999999974 68999999987533 355556
Q ss_pred CCCCccc
Q 001074 1053 PVPPKVI 1059 (1163)
Q Consensus 1053 P~~~~~~ 1059 (1163)
|.+|.+.
T Consensus 302 ~~~~n~~ 308 (312)
T cd01489 302 LDPPNPN 308 (312)
T ss_pred CCCcCCC
Confidence 6555543
No 6
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=2e-71 Score=617.47 Aligned_cols=285 Identities=58% Similarity=0.974 Sum_probs=279.9
Q ss_pred hhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHH
Q 001074 160 LHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQ 239 (1163)
Q Consensus 160 rYdRQi~l~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~ 239 (1163)
+||||+++||.++|+||++++|||+|+||+|+|+||||+++|||+|||+|++.|+++||+||||++++|||++||+++++
T Consensus 1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~ 80 (286)
T cd01491 1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQA 80 (286)
T ss_pred CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEeecCCChhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEcCCceEEEcC
Q 001074 240 KLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDV 319 (1163)
Q Consensus 240 ~L~eLNp~V~V~~~~~~l~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf~d~g~~f~v~d~ 319 (1163)
+|++|||+|+|+++...++++++.+||+||+|+++.+.+..+|++||+++ +|||.+++.|++|++|+|||++|.|.|.
T Consensus 81 ~L~eLNp~V~V~~~~~~~~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~--ipfI~a~~~G~~G~vf~dfg~~f~~~d~ 158 (286)
T cd01491 81 RLAELNPYVPVTVSTGPLTTDELLKFQVVVLTDASLEDQLKINEFCHSPG--IKFISADTRGLFGSIFCDFGDEFTVYDP 158 (286)
T ss_pred HHHHHCCCCEEEEEeccCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHcC--CEEEEEeccccEEEEEecCCCeEEEeCC
Confidence 99999999999999998999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred CCCCCcceeecccccCCCceeecccccccccccCCeeEEEeeccccccCCCCCccccccCcceeeeccccccccceeecc
Q 001074 320 DGEDPHTGIIASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGG 399 (1163)
Q Consensus 320 ~ge~p~~~~I~~I~~~~~~lv~~~d~~rh~~~dgd~V~f~ev~gm~eln~~~~~~i~~~~~~~f~i~~Dt~~f~~y~~gg 399 (1163)
+||+|.+++|.+|+++.+++|+++++.||+++|||+|+|+||+||+++|+++|++|+++++|+|+| +||+.|++|++||
T Consensus 159 ~ge~p~~~~i~~I~~~~~g~V~~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~v~~~~~~~f~i-~d~~~~~~y~~gG 237 (286)
T cd01491 159 NGEEPKSGMISSISKDNPGVVTCLDETRHGFEDGDYVTFSEVEGMTELNGCEPRKIKVKGPYTFSI-GDTSSFSEYIRGG 237 (286)
T ss_pred CCCcCCccceeeeecCCceEEEEECCcccCCcCCCEEEEeccCcchhhCCCccEEEEECCCCeEEE-CcCcCcCccccCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 5999999999999
Q ss_pred eEEEeecCeeecccchHhhhcCCCCcccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 001074 400 IVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATNINESL 479 (1163)
Q Consensus 400 ~~~qvk~p~~i~fksL~e~L~~p~~~l~~d~~k~~~~~~l~~~~~aL~~F~~~~gr~P~~~~~~Da~~l~~ia~~i~~~~ 479 (1163)
+++|||
T Consensus 238 ~~~qvK-------------------------------------------------------------------------- 243 (286)
T cd01491 238 IVTQVK-------------------------------------------------------------------------- 243 (286)
T ss_pred EEEEEe--------------------------------------------------------------------------
Confidence 999988
Q ss_pred CCCCCCCCCHHHHHHHHhhcccccCchhhHhhhhhhHHHHHhhcCCcccceeeeeeeccCCCCCC
Q 001074 480 GDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLPTE 544 (1163)
Q Consensus 480 ~~~~~~~i~~~li~~~~~~~~~el~PvaA~iGGiaAQEVIKaiTgkf~PI~q~~~fD~ie~Lp~~ 544 (1163)
++||||++||++||||||+|||||+||+||||||++|+||..
T Consensus 244 -----------------------~~~~~~~~g~~~~q~~~~~~~~~~~p~~q~~~~~~~~~l~~~ 285 (286)
T cd01491 244 -----------------------LSPMAAFFGGLAAQEVLKACSGKFTPLKQWLYFDALECLPED 285 (286)
T ss_pred -----------------------cccHHHHhhhHHHHHHHHHcCCCCCceeeEEEecHHHhcCCC
Confidence 889999999999999999999999999999999999999963
No 7
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=1.4e-62 Score=534.15 Aligned_cols=176 Identities=48% Similarity=0.833 Sum_probs=168.9
Q ss_pred cEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEEEEe
Q 001074 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 656 (1163)
Q Consensus 577 kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~~~~ 656 (1163)
||+|||+||+|||++|+|+++|| |+|+|+|+|+||.|||||||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv-----g~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~ 75 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF-----GQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQ 75 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCcccceEEEeCCcccccCCCCCCCCCCC
Q 001074 657 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQA 736 (1163)
Q Consensus 657 ~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G~v~viip~~t~~y~~~~dp~~~~~ 736 (1163)
.++.++ ..++++|++++|+||+|+||.++|+++++.|+.+++|+|++|+.|++|++++++|+.|+||.|..+|+++.+
T Consensus 76 ~~i~~~--~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~~~~~~~ 153 (234)
T cd01484 76 NKVGPE--QDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVILPGMTECIECTLYPPQKNF 153 (234)
T ss_pred ccCChh--hhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEcCCCCCCcccCCCCCCCCC
Confidence 998753 346688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCChhhHHHHHHHHh
Q 001074 737 PMCTVHSFPHNIDHCLTWARSEF 759 (1163)
Q Consensus 737 p~Ct~~~fP~~~~Hci~wAr~~F 759 (1163)
|+||+++||+.++|||+||+++|
T Consensus 154 p~Cti~~~P~~~~hci~~a~~~~ 176 (234)
T cd01484 154 PMCTIASMPRLPEHCIEWARMLQ 176 (234)
T ss_pred CccccCCCCCCchHHHHHHHHHH
Confidence 99999999999999999999854
No 8
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-57 Score=488.54 Aligned_cols=345 Identities=27% Similarity=0.488 Sum_probs=278.2
Q ss_pred CHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHh
Q 001074 566 GAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATS 645 (1163)
Q Consensus 566 G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~ 645 (1163)
+.+..+.|.+.||+|+||||+|||++||||++|+ +.++|||||+|++|||||||||+++|||+|||++||+.+.+
T Consensus 31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF-----~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~ 105 (422)
T KOG2015|consen 31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGF-----RQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNR 105 (422)
T ss_pred CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhcc-----ceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHh
Confidence 5778899999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred hCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccc---c-------ccEEecCCCCcccceE
Q 001074 646 INPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF---Q-------KPLLESGTLGAKCNTQ 715 (1163)
Q Consensus 646 ~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~---~-------~PlI~sgt~G~~G~v~ 715 (1163)
..|.+.|.+|..++.+ ++.+|+++||+||++||++++|+|+|.+.++. + +||||+||+|+|||+.
T Consensus 106 Rvp~~~v~~h~~kIqd-----~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~ar 180 (422)
T KOG2015|consen 106 RVPGCVVVPHRQKIQD-----KPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHAR 180 (422)
T ss_pred hCCCcEEeeeecchhc-----CCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeE
Confidence 9999999999999975 55789999999999999999999999987663 2 6999999999999999
Q ss_pred EEeCCcccccCCCCC--CCCCCCCCccccCCCCChhhHHHHHHHHhhhhccCChhhhhhccCCchhhhhhhhhcCchhHH
Q 001074 716 MVIPHLTENYGASRD--PPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQAR 793 (1163)
Q Consensus 716 viip~~t~~y~~~~d--p~~~~~p~Ct~~~fP~~~~Hci~wAr~~F~~lF~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~ 793 (1163)
+|+|+.|.|+.|+.| |++.++|+||+.+.|..+||||+|++-+
T Consensus 181 vI~Pg~TaCieCtldlyppqvs~P~CTiAntPRlpEHciEyv~li----------------------------------- 225 (422)
T KOG2015|consen 181 VIYPGITACIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKLI----------------------------------- 225 (422)
T ss_pred EEecCccHHHHhHHhhcCcccCcccceecCCCCCchHhhhhhhhh-----------------------------------
Confidence 999999999999876 8888899999999999999999996541
Q ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCccCCCCCCCccccCCCCCcchhHH
Q 001074 794 DNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFV 873 (1163)
Q Consensus 794 ~~l~~~~~~l~~~~~~~~~dci~~a~~~f~~~F~~~I~~Ll~~~p~d~~t~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi 873 (1163)
+|.+ -.|--..++++|+.
T Consensus 226 ----------------------qwpe-----------------------------------~~~~g~~~~gdd~~----- 243 (422)
T KOG2015|consen 226 ----------------------QWPE-----------------------------------LNPFGVPLDGDDPE----- 243 (422)
T ss_pred ----------------------cchh-----------------------------------hCccCCCCCCCCHH-----
Confidence 1221 00101123333333
Q ss_pred HHHHHHHHHHcCCCCCCCCCChHHHHHHhhhcCCCCcCCCCCcceecccccccccccCcCcHHHHHHHHHHHHHhhhcCC
Q 001074 874 MAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLP 953 (1163)
Q Consensus 874 ~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~i~~~e~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 953 (1163)
T Consensus 244 -------------------------------------------------------------------------------- 243 (422)
T KOG2015|consen 244 -------------------------------------------------------------------------------- 243 (422)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCceeeccCCCCchhHHHHHHhhhhhhccCCCCccHHHHHHHhCcccchhhhhHHHHHHHHHHHHHHHhcCCCCc
Q 001074 954 SGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKL 1033 (1163)
Q Consensus 954 ~~~~~~p~~FeKDDd~n~hidFi~aasNlRa~ny~I~~~~~~~~k~iAG~IIPAIaTTtA~vaGl~~lEl~K~l~~~~~~ 1033 (1163)
||+||.--+|.||.-|+|+.+++..+.++..+||||+|||||+||+.+|.|++|++....
T Consensus 244 ------------------hI~wi~er~~eRA~ef~I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~-- 303 (422)
T KOG2015|consen 244 ------------------HIEWIVERSNERANEFNITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTATD-- 303 (422)
T ss_pred ------------------HHHHHHHHHHHHhhhcccccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcc--
Confidence 666666667778888888888888999999999999999999999999999999998632
Q ss_pred ccccccccccccCcccccCCCCCcccccCC-cceeE----EeEEEcCCCCcHHHHHHHHHHc-CCceeeeecC-Cceeec
Q 001074 1034 EDYRNTFANLALPLFSMAEPVPPKVIKHRD-MSWTV----WDRWILKDNPTLRELIQWLKDK-GLNAYSISCG-SCLLFN 1106 (1163)
Q Consensus 1034 ~~~rn~f~nla~p~~~~~eP~~~~~~~~~~-~~~t~----Wd~~~v~~~~TL~eli~~~~~k-~l~~~~I~~g-~~llY~ 1106 (1163)
.|-+-|+| |...+.....+..... ..+.+ -..+.+.+..||+++++++.+. ++..+.++.- ..-||.
T Consensus 304 -~~~~Nym~-----~n~~eG~ytytf~~er~~nC~vCS~~~~~~~ispt~tl~~vl~~ls~~~~lk~p~~tt~~~~~ly~ 377 (422)
T KOG2015|consen 304 -DPLDNYMN-----YNAEEGIYTYTFLLERDKNCPVCSNLVQNYDISPTVTLEDVLNHLSKSFQLKSPALTTAAGRTLYL 377 (422)
T ss_pred -hhhhhhee-----eecccceeEEEeeeccCCCCccccCCCcccccCCcccHHHHHHHhhhhhccCCchhhhhhcceEee
Confidence 34444444 2222222222211100 00000 1124455678999999999988 9999888643 378999
Q ss_pred CCCc----chhhcccCcHHHH
Q 001074 1107 SMFP----RHKERMDKKVVDL 1123 (1163)
Q Consensus 1107 ~~~~----~~~~~l~~~l~~l 1123 (1163)
+++| ..++||.++|.||
T Consensus 378 ~~~~~~e~~t~~nl~~~l~~l 398 (422)
T KOG2015|consen 378 SSVPSIEEATRKNLSQSLKEL 398 (422)
T ss_pred cCCcHHHHHhhhhhhhhHHHh
Confidence 9887 3467899999998
No 9
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=6e-57 Score=502.14 Aligned_cols=249 Identities=32% Similarity=0.592 Sum_probs=225.7
Q ss_pred cEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEEEEe
Q 001074 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 656 (1163)
Q Consensus 577 kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~~~~ 656 (1163)
||+||||||+|||++|+||++|| |+|+|+|+|+||.|||||||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlVVGaGGlG~eilknLal~Gv-----g~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~ 75 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGF-----RNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHF 75 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccc--------cccEEecCCCCcccceEEEeCCcccccCCC
Q 001074 657 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF--------QKPLLESGTLGAKCNTQMVIPHLTENYGAS 728 (1163)
Q Consensus 657 ~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~--------~~PlI~sgt~G~~G~v~viip~~t~~y~~~ 728 (1163)
.++.+ ++.+|++++|+||+|+||+++|+++++.|... ++|+|++|+.|++|++++++|+.|+||.|.
T Consensus 76 ~~i~~-----~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~ 150 (291)
T cd01488 76 GKIQD-----KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECS 150 (291)
T ss_pred cccCc-----hhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccC
Confidence 88874 34689999999999999999999999998764 499999999999999999999999999998
Q ss_pred CC--CCCCCCCCccccCCCCChhhHHHHHHHHhhhhccCChhhhhhccCCchhhhhhhhhcCchhHHHHHHHHHHHhhhh
Q 001074 729 RD--PPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKE 806 (1163)
Q Consensus 729 ~d--p~~~~~p~Ct~~~fP~~~~Hci~wAr~~F~~lF~~~~~~~n~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 806 (1163)
.+ |+++.+|+||++++|+.++|||+||+.+
T Consensus 151 ~d~~p~~~~~p~Cti~~~P~~~~hci~~a~~~------------------------------------------------ 182 (291)
T cd01488 151 LDLFPPQVTFPLCTIANTPRLPEHCIEYASLI------------------------------------------------ 182 (291)
T ss_pred CCCCCCCCCCCcccccCCCCCcchheeeeeee------------------------------------------------
Confidence 76 7778899999999999999999998773
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCccCCCCCCCccccCCCCCcchhHHHHHHHHHHHHcCC
Q 001074 807 KCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGI 886 (1163)
Q Consensus 807 ~~~~~~dci~~a~~~f~~~F~~~I~~Ll~~~p~d~~t~~g~~fWs~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i 886 (1163)
.|+..+ |.
T Consensus 183 ------------------------------------------~~~~~~--~~---------------------------- 190 (291)
T cd01488 183 ------------------------------------------QWPKEF--PF---------------------------- 190 (291)
T ss_pred ------------------------------------------eccccc--CC----------------------------
Confidence 011100 00
Q ss_pred CCCCCCCChHHHHHHhhhcCCCCcCCCCCcceecccccccccccCcCcHHHHHHHHHHHHHhhhcCCCCCCcCCceeecc
Q 001074 887 PIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKD 966 (1163)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~i~~~e~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~p~~FeKD 966 (1163)
..|++|
T Consensus 191 --------------------------------------------------------------------------~~~~~d 196 (291)
T cd01488 191 --------------------------------------------------------------------------VPLDGD 196 (291)
T ss_pred --------------------------------------------------------------------------CcCCCC
Confidence 124556
Q ss_pred CCCCchhHHHHHHhhhhhhccCCCCccHHHHHHHhCcccchhhhhHHHHHHHHHHHHHHHhcCCC
Q 001074 967 DDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGH 1031 (1163)
Q Consensus 967 Dd~n~hidFi~aasNlRa~ny~I~~~~~~~~k~iAG~IIPAIaTTtA~vaGl~~lEl~K~l~~~~ 1031 (1163)
|+. ||+||+..|+.||.+|+|+..+...++.|+||||||||||||+|||++|.|++|++.+..
T Consensus 197 ~~~--~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~ 259 (291)
T cd01488 197 DPE--HIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCY 259 (291)
T ss_pred CHH--HHHHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhccc
Confidence 554 999999999999999999999999999999999999999999999999999999999754
No 10
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=100.00 E-value=3.8e-54 Score=503.26 Aligned_cols=368 Identities=25% Similarity=0.409 Sum_probs=282.3
Q ss_pred hhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHH
Q 001074 159 DLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASV 238 (1163)
Q Consensus 159 ~rYdRQi~l~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~ 238 (1163)
.|||||+|+||.+||++|++++|||+|+||+|+|++|||+|+|||+|||+|++.|+.+||++|||++++|+|++||++++
T Consensus 1 ~rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~ 80 (425)
T cd01493 1 QKYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATC 80 (425)
T ss_pred CcchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEeecCCC------hhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEcCC
Q 001074 239 QKLQELNNAVVLSTLTSKLT------KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGP 312 (1163)
Q Consensus 239 ~~L~eLNp~V~V~~~~~~l~------~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf~d~g~ 312 (1163)
++|++|||+|+++...+.++ ++++.+||+||+|.++...+..++++||+++ ||||++.+.|++|+++++++
T Consensus 81 ~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~--iPlI~~~s~G~~G~v~v~~~- 157 (425)
T cd01493 81 ELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSAN--IPLLYVRSYGLYGYIRIQLK- 157 (425)
T ss_pred HHHHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEecccCEEEEEEEEC-
Confidence 99999999999999987653 5789999999999999999999999999999 99999999999999999998
Q ss_pred ceEEEcCCCCCCcceeecccccCCCceeecccccccccccCC------eeE--EEeeccccccCCC-CCccccccCccee
Q 001074 313 EFTVVDVDGEDPHTGIIASISNDNPALVSCVDDERLEFQDGD------LVV--FSEVHGMTELNDG-KPRKIKSARPYSF 383 (1163)
Q Consensus 313 ~f~v~d~~ge~p~~~~I~~I~~~~~~lv~~~d~~rh~~~dgd------~V~--f~ev~gm~eln~~-~~~~i~~~~~~~f 383 (1163)
+|++.+++++..... .++.++||++..+.+..+.+-.|.. |+. ..-.+.|..-+++ -|.....+..|+-
T Consensus 158 ~h~i~et~p~~~~~D--LRL~~P~peL~~~~~~~dl~~ld~~~h~hvPy~viL~~~l~~w~~~~~g~~p~~~~ek~~f~~ 235 (425)
T cd01493 158 EHTIVESHPDNALED--LRLDNPFPELREHADSIDLDDMDPAEHSHTPYIVILIKYLEKWRSAHNGQLPSTYKEKKEFRD 235 (425)
T ss_pred CeEEEECCCCCCCcC--cccCCCcHHHHHHHHhcCCccCChhhcCCCCHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 688999998875544 5788999999998876543322211 111 1112223222222 2222222222211
Q ss_pred ee------ccccccccceeecceEEEeecCeeecccchHhhhcCCCCcccccCccCCCCChHHHHHHHHHHHHHH-hCCC
Q 001074 384 TL------EEDTTNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSE-LGRF 456 (1163)
Q Consensus 384 ~i------~~Dt~~f~~y~~gg~~~qvk~p~~i~fksL~e~L~~p~~~l~~d~~k~~~~~~l~~~~~aL~~F~~~-~gr~ 456 (1163)
.+ ..|..+|.+-... ..+-...+ .+ -.++++.++++.. .+.+ .....+|++.+||.+|.++ +|.+
T Consensus 236 ~i~~~~~~~~~eeNf~EA~~~-~~~~~~~~-~i-~~~v~~~~~~~~~---~~~~--~~~~~fwi~~~alk~F~~~~~g~l 307 (425)
T cd01493 236 LVRSLMRSNEDEENFEEAIKA-VNKALNRT-KI-PSSVEEIFNDDRC---ENLT--SQSSSFWIMARALKEFVAEENGLL 307 (425)
T ss_pred HHHHhcccCCCccchHHHHHH-HHHhhCCC-CC-cHHHHHHHhchhc---ccCC--CCCchHHHHHHHHHHHHHhcCCCC
Confidence 11 2344455442211 01111111 11 1345555555421 1111 2345699999999999988 9999
Q ss_pred CCCCC----------------------HHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhhcc--------cccCch
Q 001074 457 PVAGS----------------------EEDAQKLISVATNINESLGDGRVEDINTKLLRHFAFGAR--------AVLNPM 506 (1163)
Q Consensus 457 P~~~~----------------------~~Da~~l~~ia~~i~~~~~~~~~~~i~~~li~~~~~~~~--------~el~Pv 506 (1163)
|.++. ..|++++.+++.++....|.. .+.|+++.|+.||+.+. .--||+
T Consensus 308 Pl~G~lPDM~s~t~~Yi~Lq~iY~~ka~~D~~~v~~~v~~~~~~~g~~-~~~I~~~~i~~FCkna~~l~~i~~~~~~~~~ 386 (425)
T cd01493 308 PLPGTLPDMTADTEKYIKLQNIYREKAEKDAAEVEKYVREILKSLGRS-PDSISDKEIKLFCKNAAFLRVIRGRSLEHNI 386 (425)
T ss_pred CCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCCHHHHHHHHhhHHhhhcccCCcccchH
Confidence 88753 678889999888888776643 36899999999998752 222999
Q ss_pred hhHhhhhhhHHHHHhhcCCcccceeeeeeeccCC
Q 001074 507 AAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVES 540 (1163)
Q Consensus 507 aA~iGGiaAQEVIKaiTgkf~PI~q~~~fD~ie~ 540 (1163)
|||+||+|||||||++|+||+|++|+|+|||+.+
T Consensus 387 ~~~~gg~~aqE~iK~~t~q~vp~~n~~i~dg~~~ 420 (425)
T cd01493 387 SAFMGGIAAQEVIKLITKQYVPIDNTFIFDGIRS 420 (425)
T ss_pred HHHHhHHHHHHHHHHHhccccccCCceEEecccc
Confidence 9999999999999999999999999999999865
No 11
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-53 Score=459.39 Aligned_cols=313 Identities=34% Similarity=0.468 Sum_probs=265.0
Q ss_pred CchhHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchH
Q 001074 154 TDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNR 233 (1163)
Q Consensus 154 ~~~d~~rYdRQi~l~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~K 233 (1163)
++.+.++||||||+||.++|++|+++||||+|++|+|+||+|||+|+||+++|++|+..|++.|++.|||+..+++|++|
T Consensus 7 se~E~alYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~r 86 (331)
T KOG2014|consen 7 SEQEIALYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASSVGQTR 86 (331)
T ss_pred hHHHHHHHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhhhchHH
Confidence 57788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeecCC---ChhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEc
Q 001074 234 ALASVQKLQELNNAVVLSTLTSKL---TKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDF 310 (1163)
Q Consensus 234 aea~~~~L~eLNp~V~V~~~~~~l---~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf~d~ 310 (1163)
|+++.++|+.|||.|.|.+..+++ +++||.+||+||.+..+.+...++|++||+++ |+|+.++++|++||+|+|+
T Consensus 87 aeas~erl~~LNPmV~v~~d~edl~ek~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~--i~F~a~d~~g~~Gy~F~dL 164 (331)
T KOG2014|consen 87 AEASLERLQDLNPMVDVSVDKEDLSEKDEEFFTQFDLVVATDQSREEKCKVNEICRKLN--IAFYAGDCFGLCGYAFADL 164 (331)
T ss_pred HHHHHHHHHhcCCceEEEechhhhhhcchhhhhceeEEEEeccchhhhhhHHHHHHhcC--ceEEeccccceeeeeeeeh
Confidence 999999999999999999999876 56899999999999999999999999999999 9999999999999999999
Q ss_pred CCceEEEcCCCCCCcceeecccccCCCceeecccccccccccCCeeEEEeeccccccCCCCCccccccCcceeeeccccc
Q 001074 311 GPEFTVVDVDGEDPHTGIIASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTT 390 (1163)
Q Consensus 311 g~~f~v~d~~ge~p~~~~I~~I~~~~~~lv~~~d~~rh~~~dgd~V~f~ev~gm~eln~~~~~~i~~~~~~~f~i~~Dt~ 390 (1163)
++ |.+.+..-.. ..+++ .+..++ |.+
T Consensus 165 ~~-h~y~~~~~~~------~~~~~-----------------------------------~k~~k~------------~~~ 190 (331)
T KOG2014|consen 165 QE-HKYLEEKTKV------AKVSQ-----------------------------------TKRAKV------------DET 190 (331)
T ss_pred hh-hhhhhhcccc------ccccc-----------------------------------ccceee------------eec
Confidence 85 4433211000 00000 000000 100
Q ss_pred cccceeecceEEEeecCeeecccchHhhhcCCCCcccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Q 001074 391 NYGTYVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLIS 470 (1163)
Q Consensus 391 ~f~~y~~gg~~~qvk~p~~i~fksL~e~L~~p~~~l~~d~~k~~~~~~l~~~~~aL~~F~~~~gr~P~~~~~~Da~~l~~ 470 (1163)
+..-..+.+.|+|++|.|+.++. .....+..|...+|++++++..|.+.+||.|+.-..+|.+.++.
T Consensus 191 -----------~~~~vk~~~~~~~~~Eal~~~~~--~k~k~~~rr~~~~~~ll~v~l~f~~s~~r~pg~~~~~d~erl~~ 257 (331)
T KOG2014|consen 191 -----------ETEWVKRKVVFPSVKEALSVDWT--KKEKRKPRRTKKLYFLLPVLLKFRTSEGRDPGETSEEDLERLLQ 257 (331)
T ss_pred -----------cceehhhhhcccCHHHHHhcccc--hhhhhhhhccCcceehHHHHHHHHHhcCCCCccccHHHHHHHHH
Confidence 00112357789999999997631 11223456778899999999999999999999777999999999
Q ss_pred HHHHHHHhcCCCCCCCCCHHHHHHHHhhcccccCchhhHhhhhhhHHHHHhhcCCcccceeeeeeeccCCC
Q 001074 471 VATNINESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESL 541 (1163)
Q Consensus 471 ia~~i~~~~~~~~~~~i~~~li~~~~~~~~~el~PvaA~iGGiaAQEVIKaiTgkf~PI~q~~~fD~ie~L 541 (1163)
|.+++++.. .-+++.++ +|..+.+.+++|+||++||++||||||+||+|-.|++|||||||+++.
T Consensus 258 I~~ell~s~-----~i~pd~~~-~f~~~~~~ef~Pv~AvVGGivaQevIk~isk~~~Pl~Nff~fdg~~g~ 322 (331)
T KOG2014|consen 258 IRNELLESE-----TIIPDELL-EFLSLIFTEFAPVCAVVGGILAQEVIKAISKKGPPLNNFFIFDGETGK 322 (331)
T ss_pred HHHhhcccc-----ccCCchHH-HHHHhcccccCchhhhhhhHhHHHHHHHhhcCCCcccceEEeecccCc
Confidence 999988732 23556677 888999999999999999999999999999999999999999999884
No 12
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-54 Score=476.63 Aligned_cols=377 Identities=26% Similarity=0.398 Sum_probs=293.0
Q ss_pred hHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHH
Q 001074 157 DEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALA 236 (1163)
Q Consensus 157 d~~rYdRQi~l~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea 236 (1163)
...+||||+|+||.+||..|..++||++|+|++|+|++|||||+|||+||++|+..|..+|++.|||+..+++|++||++
T Consensus 6 ~~~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~GksrA~a 85 (523)
T KOG2016|consen 6 PKTKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSRAEA 85 (523)
T ss_pred hhhHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEeecCC------ChhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEc
Q 001074 237 SVQKLQELNNAVVLSTLTSKL------TKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDF 310 (1163)
Q Consensus 237 ~~~~L~eLNp~V~V~~~~~~l------~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf~d~ 310 (1163)
+++.|++|||.|..+...+.. +++++++|++||.+..+.+...++.++||+++ ||++.+.++|+.|+++...
T Consensus 86 ~~e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~--vpll~~rs~Gl~G~iRI~i 163 (523)
T KOG2016|consen 86 TLEFLQELNPSVSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREAN--VPLLLTRSYGLAGTIRISI 163 (523)
T ss_pred HHHHHHHhChhhhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcC--CceEEEeeecceEEEEEEe
Confidence 999999999999999887753 46799999999999999999999999999999 9999999999999999999
Q ss_pred CCceEEEcCCCCCCcceeecccccCCCceeecccccccccccCC------eeE--------------------------E
Q 001074 311 GPEFTVVDVDGEDPHTGIIASISNDNPALVSCVDDERLEFQDGD------LVV--------------------------F 358 (1163)
Q Consensus 311 g~~f~v~d~~ge~p~~~~I~~I~~~~~~lv~~~d~~rh~~~dgd------~V~--------------------------f 358 (1163)
.+ |++.+++++.|... .++.++||++++.++..+++..|-. |+. |
T Consensus 164 kE-H~iieshPD~~~~D--LRL~nPwpeLi~~v~s~dLd~m~~a~~shiPyivll~K~l~~w~~~~n~~~p~t~~ekk~f 240 (523)
T KOG2016|consen 164 KE-HTIIESHPDNPLDD--LRLDNPWPELIEYVDSTDLDVMDPAAHSHIPYIVLLVKYLEKWAKQHNGNLPSTYDEKKEF 240 (523)
T ss_pred ee-ccccccCCCCcccc--cccCCCcHHHHHHHhhcCccccchhhhcCCCcHHHHHHHHHHHHHhhcCCCCccHHHHHHH
Confidence 75 99999999998877 6888999999888766554322210 000 0
Q ss_pred Eee-c-cc-c---------------------------c-cCCC-------------------------------------
Q 001074 359 SEV-H-GM-T---------------------------E-LNDG------------------------------------- 370 (1163)
Q Consensus 359 ~ev-~-gm-~---------------------------e-ln~~------------------------------------- 370 (1163)
.+. . +| + + +++.
T Consensus 241 kd~i~~~~~~~DeeNyeEA~~a~~~Af~~~~i~ssv~dil~d~~c~~~~~~s~~FWim~~aLk~Fv~~e~~g~lPL~Gtl 320 (523)
T KOG2016|consen 241 KDLIRSEMGKADEENYEEAIKAVNKAFAPTQIPSSVKDILHDDRCAQIGKDSSDFWIMAAALKEFVLKEEGGFLPLRGTL 320 (523)
T ss_pred HHHHHhcCCCCccccHHHHHHHHHHHhcccCCchhHHHHhcChHHHHhcCCCcHHHHHHHHHHHHHcccCCCccCCCCCC
Confidence 000 0 00 0 0 0000
Q ss_pred ------CCccccccCcceeeeccccccccceee------cceEEEeec------------CeeecccchHhhhcCCCCc-
Q 001074 371 ------KPRKIKSARPYSFTLEEDTTNYGTYVK------GGIVTQVKQ------------PKVLNFKPLREALEDPGDF- 425 (1163)
Q Consensus 371 ------~~~~i~~~~~~~f~i~~Dt~~f~~y~~------gg~~~qvk~------------p~~i~fksL~e~L~~p~~~- 425 (1163)
+.+.|+.+..|.-+.+.|...+.++++ |.-...+.. -++++|+++++... |...
T Consensus 321 PDM~ssTe~YI~Lq~iY~eKA~~D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~fCkna~~lkv~r~~~~~eey~-~s~~~ 399 (523)
T KOG2016|consen 321 PDMTSSTEHYIRLQKIYHEKAEADALEVERRVQEVLKSLGRSPDSISDDVIKLFCKNAAKLKVCRGRTLAEEYE-KSITE 399 (523)
T ss_pred CccccCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCccccCHHHHHHHHhhhhcceeeecchhhhhhc-ccchh
Confidence 001122222222221122111111111 000001111 26788888888887 4211
Q ss_pred --ccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhhcccc
Q 001074 426 --LLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGS-EEDAQKLISVATNINESLGDGRVEDINTKLLRHFAFGARAV 502 (1163)
Q Consensus 426 --l~~d~~k~~~~~~l~~~~~aL~~F~~~~gr~P~~~~-~~Da~~l~~ia~~i~~~~~~~~~~~i~~~li~~~~~~~~~e 502 (1163)
..++.........+|+++||+++|..++|++|+... ++|+..+..++..+..+++.. ...+.++.+.||||++++|
T Consensus 400 ~~~~~~~e~~~~~~~~~~~lRavdrfl~~~gk~pG~~~v~~D~~~lks~a~~~lse~g~~-~~~v~d~~i~E~cR~gaaE 478 (523)
T KOG2016|consen 400 LIKYSSNENYSNEIGFYLLLRAVDRFLKEKGKYPGEGPVEIDITKLKSIAASLLSELGLD-GNAVTDDAIHEICRFGAAE 478 (523)
T ss_pred hhhhccccccchhHHHHHHHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHHHhccC-cccCcHHHHHHHHhcCCch
Confidence 111111223456899999999999999999999432 789999999999999998754 2478899999999999999
Q ss_pred cCchhhHhhhhhhHHHHHhhcCCcccceeeeeeeccCC
Q 001074 503 LNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVES 540 (1163)
Q Consensus 503 l~PvaA~iGGiaAQEVIKaiTgkf~PI~q~~~fD~ie~ 540 (1163)
+|.|+||+||+|||||||+||+||+||+|+|+|||++.
T Consensus 479 lH~VsAfiGGiaaQEvIKLiTkQyvPidNTFIfnGi~~ 516 (523)
T KOG2016|consen 479 LHVVSAFIGGIAAQEVIKLITKQYVPIDNTFIFNGITQ 516 (523)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhceecccceeEeccccc
Confidence 99999999999999999999999999999999999865
No 13
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=3.1e-37 Score=329.12 Aligned_cols=148 Identities=40% Similarity=0.669 Sum_probs=142.1
Q ss_pred hhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHH
Q 001074 159 DLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASV 238 (1163)
Q Consensus 159 ~rYdRQi~l~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~ 238 (1163)
+|||||+++||.++|++|++++|+|+|+||+|+|++|||+++||++|+|+|+|.|+.+||+||||++++|+|++||++++
T Consensus 2 ~~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~ 81 (197)
T cd01492 2 ALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASL 81 (197)
T ss_pred chhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEeecCCC---hhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEEE
Q 001074 239 QKLQELNNAVVLSTLTSKLT---KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFC 308 (1163)
Q Consensus 239 ~~L~eLNp~V~V~~~~~~l~---~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf~ 308 (1163)
++|+++||+++|+.+...++ ++++++||+||+|.++.+.+..+|++||+++ +|||.+++.|++|++|+
T Consensus 82 ~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~--ip~i~~~~~G~~G~v~~ 152 (197)
T cd01492 82 ERLRALNPRVKVSVDTDDISEKPEEFFSQFDVVVATELSRAELVKINELCRKLG--VKFYATGVHGLFGFVFA 152 (197)
T ss_pred HHHHHHCCCCEEEEEecCccccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEecCCEEEEEE
Confidence 99999999999999887664 3678999999999999999999999999999 99999999999998875
No 14
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=2.2e-36 Score=322.91 Aligned_cols=148 Identities=40% Similarity=0.615 Sum_probs=141.2
Q ss_pred hhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCC--CccCchHHHHH
Q 001074 160 LHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSD--NDIGKNRALAS 237 (1163)
Q Consensus 160 rYdRQi~l~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~--~DiGk~Kaea~ 237 (1163)
+||||+++||.++|++|++++|+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+|++||||+++ +|+|++||+++
T Consensus 1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~ 80 (198)
T cd01485 1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAAS 80 (198)
T ss_pred CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHHHHHhcCCCEEEEeecCCC------hhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEEEE
Q 001074 238 VQKLQELNNAVVLSTLTSKLT------KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCD 309 (1163)
Q Consensus 238 ~~~L~eLNp~V~V~~~~~~l~------~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf~d 309 (1163)
+++|+++||+++|+...+.++ ++++++||+||+|.++.+.+..+|++|++++ +|||.+++.|++|++|+|
T Consensus 81 ~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~--ip~i~~~~~G~~G~v~~~ 156 (198)
T cd01485 81 YEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHH--IPFISCATYGLIGYAFFD 156 (198)
T ss_pred HHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEeecCEEEEEEc
Confidence 999999999999999887663 3578999999999999999999999999999 999999999999998854
No 15
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=9.3e-36 Score=330.22 Aligned_cols=182 Identities=27% Similarity=0.375 Sum_probs=166.6
Q ss_pred ccCchhhhhhhcCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccc
Q 001074 554 INSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 633 (1163)
Q Consensus 554 ~~~Rydrq~~l~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~ 633 (1163)
..+||+||+.++|.++|++|++++|+||||||+||+++++||++|| |+|+|+|.|.||.||||||++|+.+|||+
T Consensus 6 ~~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGV-----G~i~lvD~D~Ve~SNLnRQ~l~~~~diG~ 80 (287)
T PRK08223 6 YDEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGI-----GKFTIADFDVFELRNFNRQAGAMMSTLGR 80 (287)
T ss_pred HHHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCC-----CeEEEEeCCCcchhccccccCcChhHCCC
Confidence 3579999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCch--HHHHHHHhhcccccccEEecCCCCcc
Q 001074 634 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNV--NARLYVDQRCLYFQKPLLESGTLGAK 711 (1163)
Q Consensus 634 ~Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~--~aR~~v~~~c~~~~~PlI~sgt~G~~ 711 (1163)
+|+++|+++++++||+++|+++..++++++. +++++++|+||||+||+ ++|+++++.|+.+++|+|.+++.|+.
T Consensus 81 ~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~----~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~ 156 (287)
T PRK08223 81 PKAEVLAEMVRDINPELEIRAFPEGIGKENA----DAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGMG 156 (287)
T ss_pred cHHHHHHHHHHHHCCCCEEEEEecccCccCH----HHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCCe
Confidence 9999999999999999999999999987543 57889999999999996 99999999999999999999999999
Q ss_pred cceEEEeCCcccccCCC-CC---CCC---------CCCCCccccCCC
Q 001074 712 CNTQMVIPHLTENYGAS-RD---PPE---------KQAPMCTVHSFP 745 (1163)
Q Consensus 712 G~v~viip~~t~~y~~~-~d---p~~---------~~~p~Ct~~~fP 745 (1163)
|++.++.|+ +.||.|. +. |++ ...|.|.-.++.
T Consensus 157 gqv~v~~p~-~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~gvl 202 (287)
T PRK08223 157 TALLVFDPG-GMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRGYL 202 (287)
T ss_pred EEEEEEcCC-CCchhhhcCCCCCCCchhhhcccCCcCCCccccCCcc
Confidence 999999987 7899983 22 222 356788777665
No 16
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=1.4e-35 Score=317.81 Aligned_cols=176 Identities=28% Similarity=0.492 Sum_probs=161.4
Q ss_pred chhhhhhh--cCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccch
Q 001074 557 RYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 634 (1163)
Q Consensus 557 Rydrq~~l--~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~ 634 (1163)
||+||+++ ||.+.|++|++++|+|||+||+||+++++|+++|+ |+|+|+|.|.||.+||+|||||+++|||++
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv-----~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~ 75 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGV-----GTIVIVDDDHVDLSNLQRQILFTEEDVGRP 75 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCC-----CeEEEecCCEEcccchhhhhccChhhCCCh
Confidence 89999999 99999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCcccce
Q 001074 635 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNT 714 (1163)
Q Consensus 635 Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G~v 714 (1163)
|+++++++++++||+++++++...+.++. + +++++++|+||+|+||.++|.++++.|+.+++|+|.+|+.|+.|++
T Consensus 76 Ka~~~~~~l~~~np~v~i~~~~~~i~~~~--~--~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g~~G~~ 151 (202)
T TIGR02356 76 KVEVAAQRLRELNSDIQVTALKERVTAEN--L--ELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVGFGGQL 151 (202)
T ss_pred HHHHHHHHHHHhCCCCEEEEehhcCCHHH--H--HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCeEEE
Confidence 99999999999999999999998886532 2 4678999999999999999999999999999999999999999999
Q ss_pred EEEeCC-cccccCCCCCCCCCCCCCccc
Q 001074 715 QMVIPH-LTENYGASRDPPEKQAPMCTV 741 (1163)
Q Consensus 715 ~viip~-~t~~y~~~~dp~~~~~p~Ct~ 741 (1163)
.++.|. .++||.|.........+.|..
T Consensus 152 ~~~~p~~~~~c~~c~~~~~~~~~~~~~~ 179 (202)
T TIGR02356 152 MVFDPGGEGPCLRCLFPDIADTGPSCAT 179 (202)
T ss_pred EEEeCCCCCCChhhcCCCCcccCCCCcc
Confidence 999998 799999954332333455643
No 17
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=1.2e-34 Score=316.36 Aligned_cols=164 Identities=35% Similarity=0.579 Sum_probs=156.5
Q ss_pred chhhhhhh--cCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccch
Q 001074 557 RYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 634 (1163)
Q Consensus 557 Rydrq~~l--~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~ 634 (1163)
||+||+++ ||.+.|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.|+.+||||||||+++|||++
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~ 75 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGV-----GKLGLVDDDVVELSNLQRQILHTEADVGQP 75 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCEEcCcccccccccChhhCCCh
Confidence 89999999 99999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCcccce
Q 001074 635 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNT 714 (1163)
Q Consensus 635 Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G~v 714 (1163)
|+++++++++++||+++|+++..++..+. + .++++++|+||+|+||+++|.++++.|+.+++|+|++|+.|..|++
T Consensus 76 Ka~~~~~~l~~~np~~~i~~~~~~i~~~~--~--~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~~g~v 151 (228)
T cd00757 76 KAEAAAERLRAINPDVEIEAYNERLDAEN--A--EELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQV 151 (228)
T ss_pred HHHHHHHHHHHhCCCCEEEEecceeCHHH--H--HHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEE
Confidence 99999999999999999999998885432 1 4678999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccccCCCC
Q 001074 715 QMVIPHLTENYGASR 729 (1163)
Q Consensus 715 ~viip~~t~~y~~~~ 729 (1163)
.+++|+.+.||.|..
T Consensus 152 ~~~~p~~~~c~~c~~ 166 (228)
T cd00757 152 TVFIPGEGPCYRCLF 166 (228)
T ss_pred EEECCCCCCCccccC
Confidence 999999999999953
No 18
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=1.7e-34 Score=318.03 Aligned_cols=166 Identities=32% Similarity=0.478 Sum_probs=156.6
Q ss_pred cCchhhhhhh--cCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCccc
Q 001074 555 NSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 632 (1163)
Q Consensus 555 ~~Rydrq~~l--~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG 632 (1163)
..||+||+.+ ||.++|++|++++|+|||+||+||+++++|+++|| |+|+|+|.|.|+.|||+||+||+++|||
T Consensus 10 ~~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~dvG 84 (245)
T PRK05690 10 MLRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGV-----GTLTLVDFDTVSLSNLQRQVLHDDATIG 84 (245)
T ss_pred HHHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCEECcchhhhhhcCChhhCC
Confidence 3799999987 99999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCccc
Q 001074 633 QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKC 712 (1163)
Q Consensus 633 ~~Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G 712 (1163)
++|+++|+++++++||+++|+++..++.++.. +++++++|+||+|+||+++|.++++.|+.+++|+|.+++.|+.|
T Consensus 85 ~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~----~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G 160 (245)
T PRK05690 85 QPKVESARAALARINPHIAIETINARLDDDEL----AALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIRMEG 160 (245)
T ss_pred ChHHHHHHHHHHHHCCCCEEEEEeccCCHHHH----HHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeeccCCc
Confidence 99999999999999999999999988875321 56889999999999999999999999999999999999999999
Q ss_pred ceEEEeCCc-ccccCCCC
Q 001074 713 NTQMVIPHL-TENYGASR 729 (1163)
Q Consensus 713 ~v~viip~~-t~~y~~~~ 729 (1163)
++.++.|+. ++||.|..
T Consensus 161 ~v~~~~~~~~~~c~~c~~ 178 (245)
T PRK05690 161 QVTVFTYQDDEPCYRCLS 178 (245)
T ss_pred eEEEEecCCCCceeeecc
Confidence 999999875 79999953
No 19
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=2.9e-34 Score=335.65 Aligned_cols=177 Identities=27% Similarity=0.453 Sum_probs=162.9
Q ss_pred cCchhhhhhh--cCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCccc
Q 001074 555 NSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 632 (1163)
Q Consensus 555 ~~Rydrq~~l--~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG 632 (1163)
.+||+||+.+ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.||.|||||||||++.|||
T Consensus 16 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gv-----g~l~lvD~D~ve~sNL~RQ~l~~~~dvG 90 (390)
T PRK07411 16 YERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGI-----GRIGIVDFDVVDSSNLQRQVIHGTSWVG 90 (390)
T ss_pred HHHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEECCCEecccccCcCcccChHHCC
Confidence 3799999999 99999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCccc
Q 001074 633 QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKC 712 (1163)
Q Consensus 633 ~~Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G 712 (1163)
++||++|+++++++||+++|+++..++.+++. .++++++|+||+|+||.++|.++++.|+..++|+|.+++.|+.|
T Consensus 91 ~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~----~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~g 166 (390)
T PRK07411 91 KPKIESAKNRILEINPYCQVDLYETRLSSENA----LDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEG 166 (390)
T ss_pred CcHHHHHHHHHHHHCCCCeEEEEecccCHHhH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccCEE
Confidence 99999999999999999999999999886432 57889999999999999999999999999999999999999999
Q ss_pred ceEEEeCCcccccCCCC-C-CCCCCCCCcc
Q 001074 713 NTQMVIPHLTENYGASR-D-PPEKQAPMCT 740 (1163)
Q Consensus 713 ~v~viip~~t~~y~~~~-d-p~~~~~p~Ct 740 (1163)
++.++.|..++||.|.- . |+....|.|.
T Consensus 167 ~~~v~~~~~~~c~~c~~~~~~~~~~~~~c~ 196 (390)
T PRK07411 167 QATVFNYEGGPNYRDLYPEPPPPGMVPSCA 196 (390)
T ss_pred EEEEECCCCCCChHHhcCCCCCcccCCCCc
Confidence 99998888899999953 3 3333345564
No 20
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=2.8e-34 Score=313.79 Aligned_cols=164 Identities=30% Similarity=0.476 Sum_probs=156.4
Q ss_pred CchhhhhhhcCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccc-h
Q 001074 556 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ-A 634 (1163)
Q Consensus 556 ~Rydrq~~l~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~-~ 634 (1163)
+||+||+++||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.|+.|||+||++|+++|+|+ +
T Consensus 8 ~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~ 82 (231)
T PRK08328 8 ERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGV-----GRILLIDEQTPELSNLNRQILHWEEDLGKNP 82 (231)
T ss_pred HHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCccChhhhccccccChhhcCchH
Confidence 79999999999999999999999999999999999999999999 99999999999999999999999999999 6
Q ss_pred HHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCcccce
Q 001074 635 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNT 714 (1163)
Q Consensus 635 Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G~v 714 (1163)
|+++|+++++++||+++|+++...+.+++ + +++++++|+||+|+||.++|.++++.|+.+++|+|.+|+.|+.|++
T Consensus 83 k~~~a~~~l~~~np~v~v~~~~~~~~~~~--~--~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~v 158 (231)
T PRK08328 83 KPLSAKWKLERFNSDIKIETFVGRLSEEN--I--DEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQV 158 (231)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeccCCHHH--H--HHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEEE
Confidence 99999999999999999999998876543 2 5688999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccccCCC
Q 001074 715 QMVIPHLTENYGAS 728 (1163)
Q Consensus 715 ~viip~~t~~y~~~ 728 (1163)
.+++|+.|+||.|.
T Consensus 159 ~~~~p~~~~c~~~~ 172 (231)
T PRK08328 159 TTIVPGKTKRLREI 172 (231)
T ss_pred EEECCCCCCCHHHh
Confidence 99999999999884
No 21
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=5.8e-34 Score=329.47 Aligned_cols=179 Identities=27% Similarity=0.392 Sum_probs=164.3
Q ss_pred cCchhhhhhh--cCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCccc
Q 001074 555 NSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 632 (1163)
Q Consensus 555 ~~Rydrq~~l--~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG 632 (1163)
.+||+||+++ ||.++|++|++++|+||||||+||+++++||++|| |+|+|+|.|.||.|||+|||||++.|||
T Consensus 6 ~~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~diG 80 (355)
T PRK05597 6 IARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGV-----GHITIIDDDTVDLSNLHRQVIHSTAGVG 80 (355)
T ss_pred HhHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcccccccCcccChhHCC
Confidence 3799999999 99999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCccc
Q 001074 633 QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKC 712 (1163)
Q Consensus 633 ~~Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G 712 (1163)
++|+++|+++++++||+++|+++..++.+++. .++++++|+||+|+||+.+|.++++.|+.+++|+|.+++.|+.|
T Consensus 81 ~~Ka~~a~~~l~~~np~v~v~~~~~~i~~~~~----~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~~g 156 (355)
T PRK05597 81 QPKAESAREAMLALNPDVKVTVSVRRLTWSNA----LDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGFDA 156 (355)
T ss_pred ChHHHHHHHHHHHHCCCcEEEEEEeecCHHHH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCeE
Confidence 99999999999999999999999988875432 46789999999999999999999999999999999999999999
Q ss_pred ceEEEeCCcccccCCC-CC-CCCCCCCCcccc
Q 001074 713 NTQMVIPHLTENYGAS-RD-PPEKQAPMCTVH 742 (1163)
Q Consensus 713 ~v~viip~~t~~y~~~-~d-p~~~~~p~Ct~~ 742 (1163)
++.++.|+.++||.|. +. |+....|.|.-.
T Consensus 157 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 188 (355)
T PRK05597 157 QLSVFHAGHGPIYEDLFPTPPPPGSVPSCSQA 188 (355)
T ss_pred EEEEEcCCCCCCHHHhCCCCCCccCCCCcccc
Confidence 9999999889999994 33 334456677543
No 22
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=2.1e-33 Score=308.11 Aligned_cols=166 Identities=30% Similarity=0.445 Sum_probs=153.7
Q ss_pred cCchhhhhhhc--CHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCccc
Q 001074 555 NSRYDAQISVF--GAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 632 (1163)
Q Consensus 555 ~~Rydrq~~l~--G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG 632 (1163)
..||+||+.++ |.++|++|++++|+|||+||+||+++++|+++|| |+|+|+|.|.|+.||||||+||++.|||
T Consensus 2 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~RQ~l~~~~diG 76 (240)
T TIGR02355 2 MLRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGV-----GNLTLLDFDTVSLSNLQRQVLHSDANIG 76 (240)
T ss_pred ccceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCC-----CEEEEEeCCcccccCcccceeeeHhhCC
Confidence 36999999995 6899999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCccc
Q 001074 633 QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKC 712 (1163)
Q Consensus 633 ~~Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G 712 (1163)
++|+++|+++++++||+++|+++..++.+++. .++++++|+||+|+||+++|.++++.|+.+++|+|.++..|+.|
T Consensus 77 ~~Ka~~a~~~l~~inp~v~i~~~~~~i~~~~~----~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G 152 (240)
T TIGR02355 77 QPKVESAKDALTQINPHIAINPINAKLDDAEL----AALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEG 152 (240)
T ss_pred CcHHHHHHHHHHHHCCCcEEEEEeccCCHHHH----HHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEe
Confidence 99999999999999999999999988875322 56889999999999999999999999999999999999999999
Q ss_pred ceEEEe-CCcccccCCCC
Q 001074 713 NTQMVI-PHLTENYGASR 729 (1163)
Q Consensus 713 ~v~vii-p~~t~~y~~~~ 729 (1163)
++.++. +..++||.|..
T Consensus 153 ~v~~~~~~~~~~c~~C~~ 170 (240)
T TIGR02355 153 QVSVFTYQDGEPCYRCLS 170 (240)
T ss_pred EEEEEecCCCCCcccccc
Confidence 988765 44578998854
No 23
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=2.2e-33 Score=299.58 Aligned_cols=152 Identities=24% Similarity=0.453 Sum_probs=145.1
Q ss_pred CchhhhhhhcCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchH
Q 001074 556 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 635 (1163)
Q Consensus 556 ~Rydrq~~l~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~K 635 (1163)
.||+||+++||.++|++|++++|+||||||+|||++|+|+++|| |+|+|+|+|.|+.|||+|||||+++|||++|
T Consensus 2 ~~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GV-----g~i~lvD~d~ve~snL~rqfl~~~~diG~~K 76 (197)
T cd01492 2 ALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGI-----GSLTILDDRTVTEEDLGAQFLIPAEDLGQNR 76 (197)
T ss_pred chhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCC-----CEEEEEECCcccHhhCCCCccccHHHcCchH
Confidence 58999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCcccceE
Q 001074 636 STVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQ 715 (1163)
Q Consensus 636 a~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G~v~ 715 (1163)
+++++++++++||+++|+++...+.+. +++||+++|+||+|.|+.++|.++++.|+.+++|+|.+|+.|+.|++.
T Consensus 77 a~a~~~~L~~lNp~v~i~~~~~~~~~~-----~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~ 151 (197)
T cd01492 77 AEASLERLRALNPRVKVSVDTDDISEK-----PEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFVF 151 (197)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCcccc-----HHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEEE
Confidence 999999999999999999998877632 367899999999999999999999999999999999999999999977
Q ss_pred EE
Q 001074 716 MV 717 (1163)
Q Consensus 716 vi 717 (1163)
+.
T Consensus 152 ~d 153 (197)
T cd01492 152 AD 153 (197)
T ss_pred Ee
Confidence 54
No 24
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=100.00 E-value=7.6e-32 Score=315.93 Aligned_cols=186 Identities=23% Similarity=0.368 Sum_probs=166.9
Q ss_pred CchhhhhhhcCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchH
Q 001074 556 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 635 (1163)
Q Consensus 556 ~Rydrq~~l~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~K 635 (1163)
.|||||+++||.++|++|++++|+||||||+|||++|||+++|| |+|+|+|.|.|+.+||+|||+++.+|||++|
T Consensus 1 ~rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GI-----g~~tIvD~~~V~~sDL~~nFfl~~~diGk~k 75 (425)
T cd01493 1 QKYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGI-----GSFTIVDGSKVDEEDLGNNFFLDASSLGKSR 75 (425)
T ss_pred CcchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCC-----CeEEEECCCcCchhhccccccCChhhcCcHH
Confidence 48999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCcccceE
Q 001074 636 STVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQ 715 (1163)
Q Consensus 636 a~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G~v~ 715 (1163)
|+++++.|+++||+++++++...+..-.. .+.+||+++|+||.|.++...+..+++.|+..++|+|.+++.|+.|+++
T Consensus 76 A~~~~~~L~eLNp~V~i~~~~e~~~~ll~--~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~v~ 153 (425)
T cd01493 76 AEATCELLQELNPDVNGSAVEESPEALLD--NDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYGYIR 153 (425)
T ss_pred HHHHHHHHHHHCCCCEEEEEecccchhhh--hHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCEEEEE
Confidence 99999999999999999999876643111 2368999999999999999999999999999999999999999999999
Q ss_pred EEeCCcccccCCCCCCCCCCCCCccccCCCCChhhH
Q 001074 716 MVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHC 751 (1163)
Q Consensus 716 viip~~t~~y~~~~dp~~~~~p~Ct~~~fP~~~~Hc 751 (1163)
+.+|..+ ...+. |......+...++||+..+|+
T Consensus 154 v~~~~h~-i~et~--p~~~~~DLRL~~P~peL~~~~ 186 (425)
T cd01493 154 IQLKEHT-IVESH--PDNALEDLRLDNPFPELREHA 186 (425)
T ss_pred EEECCeE-EEECC--CCCCCcCcccCCCcHHHHHHH
Confidence 9998532 34333 444557788899999998855
No 25
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=5.2e-32 Score=317.25 Aligned_cols=155 Identities=19% Similarity=0.249 Sum_probs=147.5
Q ss_pred CCchhHhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccC
Q 001074 153 QTDIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIG 230 (1163)
Q Consensus 153 ~~~~d~~rYdRQi~l--~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiG 230 (1163)
.++.+.+||+||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|||+++++|||
T Consensus 15 l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG 94 (392)
T PRK07878 15 LTRDEVARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVG 94 (392)
T ss_pred CCHHHHHHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCC
Confidence 346667899999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhcCCCEEEEeecCCCh----hhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEE
Q 001074 231 KNRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSV 306 (1163)
Q Consensus 231 k~Kaea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~v 306 (1163)
++||++++++|+++||+|+|+++...++. +++++||+||+|.++...+..+|++|++++ +|||++++.|++|++
T Consensus 95 ~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~--~p~v~~~~~g~~G~v 172 (392)
T PRK07878 95 RSKAQSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAG--KPYVWGSIYRFEGQA 172 (392)
T ss_pred ChHHHHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEeccCEEEE
Confidence 99999999999999999999999888865 568899999999999999999999999999 999999999999999
Q ss_pred EEE
Q 001074 307 FCD 309 (1163)
Q Consensus 307 f~d 309 (1163)
++.
T Consensus 173 ~~~ 175 (392)
T PRK07878 173 SVF 175 (392)
T ss_pred EEE
Confidence 853
No 26
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=7.6e-33 Score=324.30 Aligned_cols=164 Identities=27% Similarity=0.464 Sum_probs=155.3
Q ss_pred Cchhhhhhh--cCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccc
Q 001074 556 SRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 633 (1163)
Q Consensus 556 ~Rydrq~~l--~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~ 633 (1163)
+||+||+.+ ||.++|++|++++|+||||||+||+++++||++|| |+|+|+|.|.||.|||+|||||+++|||+
T Consensus 21 ~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~diG~ 95 (392)
T PRK07878 21 ARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGV-----GTLGIVEFDVVDESNLQRQVIHGQSDVGR 95 (392)
T ss_pred HHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCEecCcccccccccChhcCCC
Confidence 799999998 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCcccc
Q 001074 634 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 713 (1163)
Q Consensus 634 ~Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G~ 713 (1163)
+|+++++++++++||+++|+++..++..++ ..++++++|+||+|+||+.+|.++|+.|+.+++|+|.+++.|+.|+
T Consensus 96 ~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~----~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~G~ 171 (392)
T PRK07878 96 SKAQSARDSIVEINPLVNVRLHEFRLDPSN----AVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRFEGQ 171 (392)
T ss_pred hHHHHHHHHHHHhCCCcEEEEEeccCChhH----HHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEE
Confidence 999999999999999999999998887543 1568899999999999999999999999999999999999999999
Q ss_pred eEEEeCC----cccccCCC
Q 001074 714 TQMVIPH----LTENYGAS 728 (1163)
Q Consensus 714 v~viip~----~t~~y~~~ 728 (1163)
+.++.++ .++||.|.
T Consensus 172 v~~~~~~~~~~~~~c~~c~ 190 (392)
T PRK07878 172 ASVFWEDAPDGLGLNYRDL 190 (392)
T ss_pred EEEEecCCCCCCCCeeeee
Confidence 9988743 68899994
No 27
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=6.5e-33 Score=309.22 Aligned_cols=181 Identities=22% Similarity=0.336 Sum_probs=163.7
Q ss_pred chhhhhhhcCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHH
Q 001074 557 RYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKS 636 (1163)
Q Consensus 557 Rydrq~~l~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka 636 (1163)
.|+||+++||.++|+||++++|+|+|+||+|||+||||+++|| |+|+|+|.|.++.+||+|||+|+++|||++||
T Consensus 1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGV-----g~itI~D~d~ve~snL~rqf~~~~~dIGk~Ka 75 (286)
T cd01491 1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGV-----KSVTLHDTKPCSWSDLSSQFYLREEDIGKNRA 75 (286)
T ss_pred CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCC-----CeEEEEcCCccchhhcccCccCChHHhCHHHH
Confidence 4999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCcccceEE
Q 001074 637 TVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQM 716 (1163)
Q Consensus 637 ~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G~v~v 716 (1163)
++++++|+++||+++|+++...+ +.+++.++|+||+|.|+.++|..+++.|+.+++|+|.+++.|+.|++.+
T Consensus 76 ea~~~~L~eLNp~V~V~~~~~~~--------~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~~G~vf~ 147 (286)
T cd01491 76 EASQARLAELNPYVPVTVSTGPL--------TTDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGLFGSIFC 147 (286)
T ss_pred HHHHHHHHHHCCCCEEEEEeccC--------CHHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccccEEEEEe
Confidence 99999999999999999998653 3567899999999999999999999999999999999999999999988
Q ss_pred EeCCcccccCCC-CC-CCCCCCCCccccCCCCChhhHHH
Q 001074 717 VIPHLTENYGAS-RD-PPEKQAPMCTVHSFPHNIDHCLT 753 (1163)
Q Consensus 717 iip~~t~~y~~~-~d-p~~~~~p~Ct~~~fP~~~~Hci~ 753 (1163)
..+ +||.|. .+ ++.++++.|.+.+-+..+.||+.
T Consensus 148 dfg---~~f~~~d~~ge~p~~~~i~~I~~~~~g~V~~~~ 183 (286)
T cd01491 148 DFG---DEFTVYDPNGEEPKSGMISSISKDNPGVVTCLD 183 (286)
T ss_pred cCC---CeEEEeCCCCCcCCccceeeeecCCceEEEEEC
Confidence 554 555553 11 23356788888887888888863
No 28
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=6.9e-33 Score=321.25 Aligned_cols=176 Identities=27% Similarity=0.482 Sum_probs=159.7
Q ss_pred cCchhhhhhh--cCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCccc
Q 001074 555 NSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 632 (1163)
Q Consensus 555 ~~Rydrq~~l--~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG 632 (1163)
..||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.|+.|||+||+||+++|||
T Consensus 19 ~~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gv-----g~i~ivD~D~ve~sNL~RQ~l~~~~diG 93 (370)
T PRK05600 19 LRRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGV-----GTITLIDDDTVDVSNIHRQILFGASDVG 93 (370)
T ss_pred HHHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEeCCEEccccccccccCChhHCC
Confidence 3799999999 99999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCccc
Q 001074 633 QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKC 712 (1163)
Q Consensus 633 ~~Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G 712 (1163)
++|+++++++++++||+++|+++..++.+++. .++++++|+||+|+||+++|.++++.|+.+++|+|.+++.|+.|
T Consensus 94 ~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~----~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~g~~G 169 (370)
T PRK05600 94 RPKVEVAAERLKEIQPDIRVNALRERLTAENA----VELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLRFHG 169 (370)
T ss_pred CHHHHHHHHHHHHHCCCCeeEEeeeecCHHHH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCEE
Confidence 99999999999999999999999999875432 46889999999999999999999999999999999999999999
Q ss_pred ceEEEeCCc---ccccCCC-CC-CCCCCCCCc
Q 001074 713 NTQMVIPHL---TENYGAS-RD-PPEKQAPMC 739 (1163)
Q Consensus 713 ~v~viip~~---t~~y~~~-~d-p~~~~~p~C 739 (1163)
++.++.|.. +.||.|. ++ |+....+.|
T Consensus 170 ~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~c 201 (370)
T PRK05600 170 ELAVFNSGPDHRGVGLRDLFPEQPSGDSIPDC 201 (370)
T ss_pred EEEEEecCCCCCCCCcHhhCCCCCccccCCCC
Confidence 999988753 5788874 22 222334555
No 29
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=99.98 E-value=1e-32 Score=294.70 Aligned_cols=155 Identities=26% Similarity=0.447 Sum_probs=144.9
Q ss_pred chhhhhhhcCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCccc--Ccccch
Q 001074 557 RYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD--WNIGQA 634 (1163)
Q Consensus 557 Rydrq~~l~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~--~dIG~~ 634 (1163)
||+||+++||.++|++|++++|+||||||+|||++|+|+++|| |+|+|+|.|.|+.+||+|||+|++ .|+|++
T Consensus 1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GV-----g~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~ 75 (198)
T cd01485 1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGI-----DSITIVDHRLVSTEDLGSNFFLDAEVSNSGMN 75 (198)
T ss_pred CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEECCcCChhcCcccEecccchhhcCch
Confidence 7999999999999999999999999999999999999999999 999999999999999999999998 899999
Q ss_pred HHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCcccce
Q 001074 635 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNT 714 (1163)
Q Consensus 635 Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G~v 714 (1163)
|+++++++++++||+++|+++...+....+ ..++||+++|+||+|.|+..+|.++++.|+.+++|+|.+|+.|+.|++
T Consensus 76 Ka~~~~~~L~~lNp~v~i~~~~~~~~~~~~--~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v 153 (198)
T cd01485 76 RAAASYEFLQELNPNVKLSIVEEDSLSNDS--NIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIGYA 153 (198)
T ss_pred HHHHHHHHHHHHCCCCEEEEEecccccchh--hHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEE
Confidence 999999999999999999999887752112 236789999999999999999999999999999999999999999998
Q ss_pred EEEe
Q 001074 715 QMVI 718 (1163)
Q Consensus 715 ~vii 718 (1163)
.+..
T Consensus 154 ~~~~ 157 (198)
T cd01485 154 FFDF 157 (198)
T ss_pred EEch
Confidence 7543
No 30
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.98 E-value=5.9e-32 Score=304.98 Aligned_cols=278 Identities=19% Similarity=0.313 Sum_probs=209.7
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecCCCh
Q 001074 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTK 259 (1163)
Q Consensus 180 ~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~l~~ 259 (1163)
+|+|+|+||+|+|++|||+++|||+|+|+|.|.|+.+||+|||+++++|||++||++++++|+++||+|+|+++...+++
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999887753
Q ss_pred -----hhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEcCCceEEEc-CCCCCCcceeecccc
Q 001074 260 -----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVD-VDGEDPHTGIIASIS 333 (1163)
Q Consensus 260 -----e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf~d~g~~f~v~d-~~ge~p~~~~I~~I~ 333 (1163)
+++++||+||.|.++.+.+..+|++|+.++ +|||.+++.|++|+++++++..+.+.+ ..+++|.+..+..|.
T Consensus 81 ~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~--ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~pictI~ 158 (312)
T cd01489 81 PDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAAD--VPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTFPVCTIR 158 (312)
T ss_pred ccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCC--CCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcCCcceec
Confidence 689999999999999999999999999999 999999999999999999998887777 677888888888888
Q ss_pred cCCCceeecccccccccccCCeeEEEeeccccccCCCCCccccccCcceeeeccccccccceeecceEEEeecCeeeccc
Q 001074 334 NDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQPKVLNFK 413 (1163)
Q Consensus 334 ~~~~~lv~~~d~~rh~~~dgd~V~f~ev~gm~eln~~~~~~i~~~~~~~f~i~~Dt~~f~~y~~gg~~~qvk~p~~i~fk 413 (1163)
+.....+++++..++-|+ .|..+ |.-.| ..... ....++.-|.|..+.|.
T Consensus 159 ~~p~~~~hci~~a~~~f~-----~~~~~-------------------f~~~i----~~l~~--~~~~w~~~~~p~p~~~~ 208 (312)
T cd01489 159 STPSQPIHCIVWAKSLFF-----LFNKV-------------------FKDDI----ERLLS--MEELWKTRKPPVPLSWK 208 (312)
T ss_pred CCCCCCEeehhHHHHHHH-----HHHHH-------------------HHHHH----HHHHh--hhhhhcCCCCCCCCCCC
Confidence 777778888765544332 01000 00000 00000 00001111112211111
Q ss_pred chHhhhcCCCCcccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHH
Q 001074 414 PLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATNINESLGDGRVEDINTKLLR 493 (1163)
Q Consensus 414 sL~e~L~~p~~~l~~d~~k~~~~~~l~~~~~aL~~F~~~~gr~P~~~~~~Da~~l~~ia~~i~~~~~~~~~~~i~~~li~ 493 (1163)
.+ .|. ..+....+-+.+.++.....++ +...+...++
T Consensus 209 ~~--------------------------------~fd--------kDd~~~~~~v~~~a~lRa~~f~---I~~~~~~~~k 245 (312)
T cd01489 209 EL--------------------------------TFD--------KDDQDALDFVAAAANLRSHVFG---IPMKSRFDIK 245 (312)
T ss_pred Cc--------------------------------CcC--------CCCHHHHHHHHHHHHHHHHHcC---CCCCCHHHHH
Confidence 10 000 0123344445555555555554 3456677788
Q ss_pred HHHhhcccccCchhhHhhhhhhHHHHHhhcCCcccceee
Q 001074 494 HFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQF 532 (1163)
Q Consensus 494 ~~~~~~~~el~PvaA~iGGiaAQEVIKaiTgkf~PI~q~ 532 (1163)
.++...-+.++.+.|+++|++..|++|.++++..-.++.
T Consensus 246 ~i~g~IiPaiatTnaivag~~~~e~~k~~~~~~~~~~~~ 284 (312)
T cd01489 246 QMAGNIIPAIATTNAIIAGLIVLEALKVLSGDKEQCRTV 284 (312)
T ss_pred HHhccccchhhHHHHHHHHHHHHHHHHHHhhhHHHhhhH
Confidence 888888888999999999999999999999986555553
No 31
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=99.98 E-value=2.5e-32 Score=313.28 Aligned_cols=166 Identities=30% Similarity=0.458 Sum_probs=156.5
Q ss_pred cCchhhhhhh--cCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCccc
Q 001074 555 NSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 632 (1163)
Q Consensus 555 ~~Rydrq~~l--~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG 632 (1163)
.+||+||+.+ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.||.|||+||+||+++|+|
T Consensus 2 ~~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGv-----g~i~lvD~D~ve~sNL~RQ~l~~~~d~~ 76 (338)
T PRK12475 2 QERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGI-----GKLTIADRDYVEWSNLQRQQLYTEEDAK 76 (338)
T ss_pred cchhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCcccccccCccccccHHHcc
Confidence 4699999987 89999999999999999999999999999999999 9999999999999999999999999985
Q ss_pred --chHHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCc
Q 001074 633 --QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGA 710 (1163)
Q Consensus 633 --~~Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~ 710 (1163)
++|+++|+++++++||+++|+++...+++++ + +++++++|+||+|+||.++|.++++.|+.+++|+|.+|..|+
T Consensus 77 ~g~~Ka~aa~~~l~~inp~v~i~~~~~~~~~~~--~--~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~ 152 (338)
T PRK12475 77 QKKPKAIAAKEHLRKINSEVEIVPVVTDVTVEE--L--EELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGS 152 (338)
T ss_pred CCccHHHHHHHHHHHHCCCcEEEEEeccCCHHH--H--HHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccc
Confidence 8999999999999999999999988876432 2 467899999999999999999999999999999999999999
Q ss_pred ccceEEEeCCcccccCCCC
Q 001074 711 KCNTQMVIPHLTENYGASR 729 (1163)
Q Consensus 711 ~G~v~viip~~t~~y~~~~ 729 (1163)
.|++.+++|+.|+||.|..
T Consensus 153 ~G~~~~~~P~~tpC~~Cl~ 171 (338)
T PRK12475 153 YGVTYTIIPGKTPCLRCLM 171 (338)
T ss_pred EEEEEEECCCCCCCHHHhc
Confidence 9999999999999999964
No 32
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.98 E-value=1.4e-31 Score=309.64 Aligned_cols=152 Identities=23% Similarity=0.305 Sum_probs=146.7
Q ss_pred chhHhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCch
Q 001074 155 DIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKN 232 (1163)
Q Consensus 155 ~~d~~rYdRQi~l--~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~ 232 (1163)
.++.+||+||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|||+++++|+|++
T Consensus 3 ~~~~~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~ 82 (355)
T PRK05597 3 NLDIARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQP 82 (355)
T ss_pred hHHHhHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCCh
Confidence 5678899999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeecCCCh----hhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEEE
Q 001074 233 RALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFC 308 (1163)
Q Consensus 233 Kaea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf~ 308 (1163)
||++++++|+++||+|+|+++...+++ +++.+||+||+|.++...+..+|++|++++ +|||++.+.|+.|++.+
T Consensus 83 Ka~~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~--ip~v~~~~~g~~g~v~~ 160 (355)
T PRK05597 83 KAESAREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAARLG--IPHVWASILGFDAQLSV 160 (355)
T ss_pred HHHHHHHHHHHHCCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEEecCeEEEEE
Confidence 999999999999999999999888874 468899999999999999999999999999 99999999999999985
No 33
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=99.97 E-value=4.8e-32 Score=311.12 Aligned_cols=165 Identities=30% Similarity=0.433 Sum_probs=155.9
Q ss_pred cCchhhhhhh--cCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCccc
Q 001074 555 NSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 632 (1163)
Q Consensus 555 ~~Rydrq~~l--~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG 632 (1163)
++||+||+.+ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.||.|||+||+||+++|||
T Consensus 2 ~~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGv-----g~i~lvD~D~Ve~sNL~RQ~l~~~~dig 76 (339)
T PRK07688 2 NERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGV-----GKVTIVDRDYVEWSNLQRQQLYTESDVK 76 (339)
T ss_pred cchhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCccCHHHcCccccccHHHhc
Confidence 4799999988 99999999999999999999999999999999999 9999999999999999999999999995
Q ss_pred --chHHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCc
Q 001074 633 --QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGA 710 (1163)
Q Consensus 633 --~~Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~ 710 (1163)
++|+++++++++++||+++|+++..++++++. .++++++|+||+|+||+++|.++++.|+.+++|+|.++..|+
T Consensus 77 ~g~~Ka~aa~~~l~~inp~v~v~~~~~~~~~~~~----~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g~ 152 (339)
T PRK07688 77 NNLPKAVAAKKRLEEINSDVRVEAIVQDVTAEEL----EELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVGS 152 (339)
T ss_pred CCCcHHHHHHHHHHHHCCCcEEEEEeccCCHHHH----HHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeeee
Confidence 59999999999999999999999988875432 467899999999999999999999999999999999999999
Q ss_pred ccceEEEeCCcccccCCC
Q 001074 711 KCNTQMVIPHLTENYGAS 728 (1163)
Q Consensus 711 ~G~v~viip~~t~~y~~~ 728 (1163)
.|++.++.|+.++||.|.
T Consensus 153 ~G~~~~~~p~~~pC~~Cl 170 (339)
T PRK07688 153 YGLSYTIIPGKTPCLRCL 170 (339)
T ss_pred eeEEEEECCCCCCCeEee
Confidence 999999999999999994
No 34
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.97 E-value=1.1e-30 Score=302.91 Aligned_cols=153 Identities=25% Similarity=0.399 Sum_probs=147.0
Q ss_pred CchhHhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCc
Q 001074 154 TDIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGK 231 (1163)
Q Consensus 154 ~~~d~~rYdRQi~l--~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk 231 (1163)
++.+.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+|||+++++|+|+
T Consensus 15 ~~~e~~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~ 94 (370)
T PRK05600 15 PTSELRRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGR 94 (370)
T ss_pred CHHHHHHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCC
Confidence 45667899999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeecCCCh----hhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEE
Q 001074 232 NRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVF 307 (1163)
Q Consensus 232 ~Kaea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf 307 (1163)
+||++++++|+++||+++|+.+...+++ ++++++|+||+|.|+.+.+..+|++|++++ +|||++++.|+.|++.
T Consensus 95 ~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~--iP~v~~~~~g~~G~v~ 172 (370)
T PRK05600 95 PKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEITG--TPLVWGTVLRFHGELA 172 (370)
T ss_pred HHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEEecCEEEEE
Confidence 9999999999999999999999988875 468899999999999999999999999999 9999999999999987
Q ss_pred E
Q 001074 308 C 308 (1163)
Q Consensus 308 ~ 308 (1163)
+
T Consensus 173 v 173 (370)
T PRK05600 173 V 173 (370)
T ss_pred E
Confidence 5
No 35
>PRK08223 hypothetical protein; Validated
Probab=99.97 E-value=1.3e-30 Score=289.27 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=145.2
Q ss_pred hHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHH
Q 001074 157 DEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALA 236 (1163)
Q Consensus 157 d~~rYdRQi~l~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea 236 (1163)
-+++|+||+.++|.++|+||++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|||+++++|||++||++
T Consensus 6 ~~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~ 85 (287)
T PRK08223 6 YDEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEV 85 (287)
T ss_pred HHHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEeecCCCh----hhcCCCcEEEEecCCh--hHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEc
Q 001074 237 SVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISL--DKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDF 310 (1163)
Q Consensus 237 ~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVI~~~~~~--~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf~d~ 310 (1163)
++++|+++||+++|+++...+++ ++++++|+||+|.|++ +.+..+|+.|++++ +|||++.+.|+.|++.+-.
T Consensus 86 a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~--iP~V~~~~~g~~gqv~v~~ 163 (287)
T PRK08223 86 LAEMVRDINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRG--IPALTAAPLGMGTALLVFD 163 (287)
T ss_pred HHHHHHHHCCCCEEEEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcC--CCEEEEeccCCeEEEEEEc
Confidence 99999999999999999988865 5688999999999975 89999999999999 9999999999999987655
Q ss_pred C
Q 001074 311 G 311 (1163)
Q Consensus 311 g 311 (1163)
+
T Consensus 164 p 164 (287)
T PRK08223 164 P 164 (287)
T ss_pred C
Confidence 3
No 36
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=99.97 E-value=1.5e-30 Score=286.73 Aligned_cols=153 Identities=22% Similarity=0.343 Sum_probs=145.6
Q ss_pred CchhHhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCc
Q 001074 154 TDIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGK 231 (1163)
Q Consensus 154 ~~~d~~rYdRQi~l--~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk 231 (1163)
.+.+.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|||+
T Consensus 6 ~~~~~~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~ 85 (245)
T PRK05690 6 SDEEMLRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQ 85 (245)
T ss_pred CHHHHHHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCC
Confidence 45566899999988 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeecCCCh----hhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEE
Q 001074 232 NRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVF 307 (1163)
Q Consensus 232 ~Kaea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf 307 (1163)
+||++++++|+++||+++|+.+...+++ +++++||+||+|.++.+.+..+|++|++++ +|||.+++.|+.|++.
T Consensus 86 ~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~--ip~v~~~~~g~~G~v~ 163 (245)
T PRK05690 86 PKVESARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAK--KPLVSGAAIRMEGQVT 163 (245)
T ss_pred hHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhC--CEEEEeeeccCCceEE
Confidence 9999999999999999999999988875 467899999999999999999999999999 9999999999999986
Q ss_pred E
Q 001074 308 C 308 (1163)
Q Consensus 308 ~ 308 (1163)
+
T Consensus 164 ~ 164 (245)
T PRK05690 164 V 164 (245)
T ss_pred E
Confidence 5
No 37
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.97 E-value=5.5e-31 Score=287.37 Aligned_cols=162 Identities=27% Similarity=0.407 Sum_probs=143.9
Q ss_pred HhcCcEEEEecCcchHHHHHHHHHccccc---C-CCc-cEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhC
Q 001074 573 LEDAKVFIVGSGALGCEFLKNVALMGVSC---G-NQG-KLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSIN 647 (1163)
Q Consensus 573 L~~~kVlvVGaGglGce~lknLa~~Gv~~---~-~~g-~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~n 647 (1163)
-+..+|+||||||+||+++++||++|+++ | +.| +|+|+|+|+||.|||||| +|+++|||++||+++++++.+++
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHCCcHHHHHHHHHHHhcc
Confidence 36789999999999999999999998644 2 123 999999999999999999 68889999999999999999988
Q ss_pred CCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhccc--c-cccEEecCC--------CCc-----c
Q 001074 648 PRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLY--F-QKPLLESGT--------LGA-----K 711 (1163)
Q Consensus 648 p~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~--~-~~PlI~sgt--------~G~-----~ 711 (1163)
+++|+++..++.++ .++.++|+||+|+||+++|.++++.|++ . .+|++++|+ .|. +
T Consensus 88 -~~~i~a~~~~~~~~-------~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~i~~~~k 159 (244)
T TIGR03736 88 -GTDWTAHPERVERS-------STLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQVPSRAK 159 (244)
T ss_pred -CceEEEEEeeeCch-------hhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEecccccc
Confidence 89999999888762 2356899999999999999999999988 3 489999999 677 8
Q ss_pred cceEEEeCCcccccCCCCCC---CCCCCCCccccC
Q 001074 712 CNTQMVIPHLTENYGASRDP---PEKQAPMCTVHS 743 (1163)
Q Consensus 712 G~v~viip~~t~~y~~~~dp---~~~~~p~Ct~~~ 743 (1163)
|++++++|+.|++|.+..|| ++++.|+||+..
T Consensus 160 ~~~~~~lP~vte~y~~~~d~~~~~~~~~PsCsla~ 194 (244)
T TIGR03736 160 GENRLRLPHVGELFPELIDPSVDPDDDRPSCSLAE 194 (244)
T ss_pred cCCceecCCchhhCcccccCccCCCCCCCCchHHH
Confidence 99999999999999998888 778999998763
No 38
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=99.97 E-value=1.3e-30 Score=279.60 Aligned_cols=149 Identities=27% Similarity=0.430 Sum_probs=143.2
Q ss_pred hhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHH
Q 001074 160 LHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALAS 237 (1163)
Q Consensus 160 rYdRQi~l--~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~ 237 (1163)
|||||+++ ||.++|++|++++|+|+|+||+|+++|++|+++||++|+|+|+|.|+++||+|||+++++|+|++||+++
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVA 80 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHH
Confidence 79999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEeecCCCh----hhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEc
Q 001074 238 VQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDF 310 (1163)
Q Consensus 238 ~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf~d~ 310 (1163)
+++|+++||+++++.+...+++ ++++++|+||+|.++.+.+..++++|++++ +|||.+++.|++|++++-.
T Consensus 81 ~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~--ip~i~~~~~g~~G~~~~~~ 155 (202)
T TIGR02356 81 AQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACVALG--TPLISAAVVGFGGQLMVFD 155 (202)
T ss_pred HHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEeccCeEEEEEEe
Confidence 9999999999999999888865 368899999999999999999999999999 9999999999999998644
No 39
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=99.97 E-value=9e-31 Score=290.42 Aligned_cols=166 Identities=36% Similarity=0.603 Sum_probs=156.7
Q ss_pred cCchhhhhhh--cCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCccc
Q 001074 555 NSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 632 (1163)
Q Consensus 555 ~~Rydrq~~l--~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG 632 (1163)
..||+||+.+ +|.++|++|+.++|+||||||+||+++++|+++|| |+++|+|.|+|+.|||+||++|++.|||
T Consensus 8 ~~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGv-----g~l~i~D~d~v~~snL~rq~~~~~~dig 82 (254)
T COG0476 8 IERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGV-----GKLTIVDFDTVELSNLQRQFLFTEADVG 82 (254)
T ss_pred HHhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCC-----CeEEEEcCCcccccccCceeeecccccC
Confidence 3799999999 45555999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCccc
Q 001074 633 QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKC 712 (1163)
Q Consensus 633 ~~Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G 712 (1163)
++|+++|++.++++||.++++++...++.++. .+++.++|+|++|+||+.+|..+|+.|+..++|++++|+.|+.|
T Consensus 83 ~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~----~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~~~~~g 158 (254)
T COG0476 83 KPKAEVAAKALRKLNPLVEVVAYLERLDEENA----EELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEG 158 (254)
T ss_pred CcHHHHHHHHHHHhCCCCeEEEeecccChhhH----HHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeeeccceE
Confidence 99999999999999999999999999886543 57889999999999999999999999999999999999999999
Q ss_pred ceEEEeCC-cccccCCCC
Q 001074 713 NTQMVIPH-LTENYGASR 729 (1163)
Q Consensus 713 ~v~viip~-~t~~y~~~~ 729 (1163)
++.+++|. .++||.|.-
T Consensus 159 ~~~~~~~~~~~~c~~~~~ 176 (254)
T COG0476 159 QVTVIIPGDKTPCYRCLF 176 (254)
T ss_pred EEEEEecCCCCCcccccC
Confidence 99999999 599999953
No 40
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.97 E-value=1e-30 Score=305.41 Aligned_cols=177 Identities=29% Similarity=0.542 Sum_probs=160.7
Q ss_pred Cchhhhhhh--cCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccc
Q 001074 556 SRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 633 (1163)
Q Consensus 556 ~Rydrq~~l--~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~ 633 (1163)
.||+||+.+ ||.+.|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.|+.|||+||+||+++|||+
T Consensus 114 ~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gv-----g~i~lvD~d~v~~sNl~Rq~l~~~~diG~ 188 (376)
T PRK08762 114 ERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGV-----GTLGIVDHDVVDRSNLQRQILHTEDRVGQ 188 (376)
T ss_pred HHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEecchhhccccccchhhCCC
Confidence 799999998 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCcccc
Q 001074 634 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 713 (1163)
Q Consensus 634 ~Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G~ 713 (1163)
+|+++++++++++||+++|+++...+.+++. .++++++|+||+|+||+++|.++++.|+.+++|+|.+|+.|+.|+
T Consensus 189 ~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~----~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g~~g~ 264 (376)
T PRK08762 189 PKVDSAAQRLAALNPDVQVEAVQERVTSDNV----EALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFRFEGQ 264 (376)
T ss_pred cHHHHHHHHHHHHCCCCEEEEEeccCChHHH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEE
Confidence 9999999999999999999999888765331 467889999999999999999999999999999999999999999
Q ss_pred eEEEeCCc----ccccCCCC-C-CCCCCCCCccc
Q 001074 714 TQMVIPHL----TENYGASR-D-PPEKQAPMCTV 741 (1163)
Q Consensus 714 v~viip~~----t~~y~~~~-d-p~~~~~p~Ct~ 741 (1163)
+.++.|+. +.||.|.- . |+....|.|..
T Consensus 265 v~~~~p~~~~~~~~c~~c~~~~~~~~~~~~~~~~ 298 (376)
T PRK08762 265 VSVFDAGRQRGQAPCYRCLFPEPPPPELAPSCAE 298 (376)
T ss_pred EEEEeCCCCCCCCCCHhhcCCCCCCcccCCCCcc
Confidence 99999876 89999952 2 22223455643
No 41
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=99.97 E-value=3.2e-30 Score=281.64 Aligned_cols=149 Identities=26% Similarity=0.406 Sum_probs=142.8
Q ss_pred hhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHH
Q 001074 160 LHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALAS 237 (1163)
Q Consensus 160 rYdRQi~l--~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~ 237 (1163)
|||||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+++||+||||++++|+|++||+++
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAA 80 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHH
Confidence 79999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEeecCCCh----hhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEc
Q 001074 238 VQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDF 310 (1163)
Q Consensus 238 ~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf~d~ 310 (1163)
+++|+++||+++|+.+...+++ +++.++|+||+|.++.+.+..++++|++++ +|+|.+++.|+.|++....
T Consensus 81 ~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~--ip~i~~g~~g~~g~v~~~~ 155 (228)
T cd00757 81 AERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLG--KPLVSGAVLGFEGQVTVFI 155 (228)
T ss_pred HHHHHHhCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEEEeccCEEEEEEEC
Confidence 9999999999999999888754 467889999999999999999999999999 9999999999999987654
No 42
>PRK07411 hypothetical protein; Validated
Probab=99.97 E-value=5.8e-30 Score=299.46 Aligned_cols=155 Identities=19% Similarity=0.256 Sum_probs=148.4
Q ss_pred CCchhHhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccC
Q 001074 153 QTDIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIG 230 (1163)
Q Consensus 153 ~~~~d~~rYdRQi~l--~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiG 230 (1163)
+++.+.+||+||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|||+++++|+|
T Consensus 11 l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG 90 (390)
T PRK07411 11 LSKDEYERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVG 90 (390)
T ss_pred CCHHHHHHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCC
Confidence 456677899999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhcCCCEEEEeecCCCh----hhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEE
Q 001074 231 KNRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSV 306 (1163)
Q Consensus 231 k~Kaea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~v 306 (1163)
++||++++++|+++||+|+|+++...+++ +++.+||+||+|.|+.+.+..+|++|++.+ +|+|++++.|++|++
T Consensus 91 ~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~--~p~v~~~~~g~~g~~ 168 (390)
T PRK07411 91 KPKIESAKNRILEINPYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLN--KPNVYGSIFRFEGQA 168 (390)
T ss_pred CcHHHHHHHHHHHHCCCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEEccCEEEE
Confidence 99999999999999999999999988865 468899999999999999999999999999 999999999999998
Q ss_pred EEE
Q 001074 307 FCD 309 (1163)
Q Consensus 307 f~d 309 (1163)
.+-
T Consensus 169 ~v~ 171 (390)
T PRK07411 169 TVF 171 (390)
T ss_pred EEE
Confidence 865
No 43
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.97 E-value=3.3e-31 Score=289.48 Aligned_cols=163 Identities=28% Similarity=0.458 Sum_probs=156.2
Q ss_pred Cchhhhhhh--cCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccc
Q 001074 556 SRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 633 (1163)
Q Consensus 556 ~Rydrq~~l--~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~ 633 (1163)
.||+||+.+ ||..+|.+|.+++|+||||||+||..+..||.+|+ |+|-|||.|.||.|||.||.++++..+|+
T Consensus 45 ~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGv-----G~lGiVD~DvVe~sNlhRQVlh~ea~vg~ 119 (427)
T KOG2017|consen 45 LRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGV-----GRLGIVDYDVVELSNLHRQVLHTEARVGM 119 (427)
T ss_pred HhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCC-----CeecccccceeehhhHHHHHhhhhhhhhh
Confidence 899999988 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCcccc
Q 001074 634 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 713 (1163)
Q Consensus 634 ~Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G~ 713 (1163)
+|++.|+..++++||+++|+.|...+.+++. .+.++++|+|+||+||+.+|+.+++.|+..++|||.+..+++.|+
T Consensus 120 ~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa----~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSaLr~EGQ 195 (427)
T KOG2017|consen 120 HKAESAAAFLRRLNSHVEVQTYNEFLSSSNA----FDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSALRWEGQ 195 (427)
T ss_pred HHHHHHHHHHHhcCCCceeeechhhccchhH----HHHhhccceEEEcCCCccchhhhhhHHHHcCCcccccccccccce
Confidence 9999999999999999999999999987664 367899999999999999999999999999999999999999999
Q ss_pred eEEEeCCcccccCC
Q 001074 714 TQMVIPHLTENYGA 727 (1163)
Q Consensus 714 v~viip~~t~~y~~ 727 (1163)
..++--.-.+||.|
T Consensus 196 LtvYny~~GPCYRC 209 (427)
T KOG2017|consen 196 LTVYNYNNGPCYRC 209 (427)
T ss_pred eEEeecCCCceeee
Confidence 98876677899999
No 44
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.96 E-value=3.4e-29 Score=279.79 Aligned_cols=264 Identities=19% Similarity=0.262 Sum_probs=197.4
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecCCC-
Q 001074 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLT- 258 (1163)
Q Consensus 180 ~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~l~- 258 (1163)
+|||+|+||+|+|++|||+++|||+|+|+|.|.|+.+||+|||+++++|||++||++++++|+++||.++|+.+...+.
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999987774
Q ss_pred --hhhcCCCcEEEEecCChhHHHHHHHHHHhcC------CCceeEEeeecceeEEEEEEcCCceEEEcCCCC-CCcc--e
Q 001074 259 --KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQ------PAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGE-DPHT--G 327 (1163)
Q Consensus 259 --~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~------~~IpfI~~~~~G~~G~vf~d~g~~f~v~d~~ge-~p~~--~ 327 (1163)
++++++||+||++.|+.+.|..+|+.|.+.. ..+|||.+++.|+.|++.+..+....+.+..-+ .|.. .
T Consensus 81 ~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p~~~~~ 160 (291)
T cd01488 81 KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQVTF 160 (291)
T ss_pred hhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccCCCCCCCCCCC
Confidence 4789999999999999999999999875531 128999999999999999877542212211101 0100 0
Q ss_pred eecccccCCCceeecccccccccccCCeeEEEeeccccccCCCCCccccccCcceeeeccccccccceeecceEEEeecC
Q 001074 328 IIASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQP 407 (1163)
Q Consensus 328 ~I~~I~~~~~~lv~~~d~~rh~~~dgd~V~f~ev~gm~eln~~~~~~i~~~~~~~f~i~~Dt~~f~~y~~gg~~~qvk~p 407 (1163)
.+..|. ..|+.... +| . | ..
T Consensus 161 p~Cti~------------------------------------~~P~~~~h------ci-----~---~-----a~----- 180 (291)
T cd01488 161 PLCTIA------------------------------------NTPRLPEH------CI-----E---Y-----AS----- 180 (291)
T ss_pred Cccccc------------------------------------CCCCCcch------he-----e---e-----ee-----
Confidence 000000 00100000 01 0 0 00
Q ss_pred eeecccchHhhhcCCCCcccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 001074 408 KVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATNINESLGDGRVEDI 487 (1163)
Q Consensus 408 ~~i~fksL~e~L~~p~~~l~~d~~k~~~~~~l~~~~~aL~~F~~~~gr~P~~~~~~Da~~l~~ia~~i~~~~~~~~~~~i 487 (1163)
.+.|.. ..| +.--...+.++.+.+.+.|++..++++. +.+
T Consensus 181 -~~~~~~-----~~~-------------------------------~~~~~~d~~~~~~~i~~~a~~ra~~f~i---~~~ 220 (291)
T cd01488 181 -LIQWPK-----EFP-------------------------------FVPLDGDDPEHIEWLYQKALERAAQFNI---SGV 220 (291)
T ss_pred -eeeccc-----ccC-------------------------------CCcCCCCCHHHHHHHHHHHHHHHHHcCC---Ccc
Confidence 000000 001 0111123466777777888887777763 456
Q ss_pred CHHHHHHHHhhcccccCchhhHhhhhhhHHHHHhhcCCcccceeeeeeeccCCCCC
Q 001074 488 NTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLPT 543 (1163)
Q Consensus 488 ~~~li~~~~~~~~~el~PvaA~iGGiaAQEVIKaiTgkf~PI~q~~~fD~ie~Lp~ 543 (1163)
+-.+++.++...-+.++.+.|++||..+-|++|.+|+...+++||+.|.|-+++-.
T Consensus 221 ~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~~~~~n~~~~~g~~g~~~ 276 (291)
T cd01488 221 TYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCYENLNNYLMYNGVDGCYT 276 (291)
T ss_pred cHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhccccCCCceEEEecCCceEE
Confidence 77889999999899999999999999999999999999999999999999887643
No 45
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=99.96 E-value=5e-31 Score=260.30 Aligned_cols=123 Identities=44% Similarity=0.839 Sum_probs=98.7
Q ss_pred ccccccccccCcccccCCCCCcccccCCcceeEEeEEEcCCCCcHHHHHHHHHHc-CCceeeeecCCceeecCC-Ccchh
Q 001074 1036 YRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRWILKDNPTLRELIQWLKDK-GLNAYSISCGSCLLFNSM-FPRHK 1113 (1163)
Q Consensus 1036 ~rn~f~nla~p~~~~~eP~~~~~~~~~~~~~t~Wd~~~v~~~~TL~eli~~~~~k-~l~~~~I~~g~~llY~~~-~~~~~ 1113 (1163)
|||+|+|||+|+|.|+||.+|++.++.+.+||+||||++.+++||++||++|+++ |++++||++|+++||++| .++++
T Consensus 1 yrN~F~NLAlP~~~fsEP~~~~k~k~~~~~~T~WDr~~v~~~~Tl~~li~~~~~~~~lev~ml~~g~~~LY~~f~~~~~~ 80 (125)
T PF09358_consen 1 YRNSFLNLALPFFSFSEPIPAPKTKYNDKEWTLWDRIEVNGDMTLQELIDYFKEKYGLEVTMLSQGVSLLYSSFPPPKHK 80 (125)
T ss_dssp --EEEEETTTTEEEEE---B--EEEETTEEETTT-EEEEES--BHHHHHHHHHHTTS-EEEEEEETTEEEEETT-HHHHH
T ss_pred CccEEEEcCccceeeeeccCCCceEecCccccceeEEEEcCCCCHHHHHHHHHHHhCceEEEEEeCCEEEEecCChhhhH
Confidence 8999999999999999999999999999999999999999999999999999999 999999999999999999 45889
Q ss_pred hcccCcHHHHHHHhhccCCCCceeEEEEEEEeecCCCCccccCeE
Q 001074 1114 ERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLI 1158 (1163)
Q Consensus 1114 ~~l~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~P~v 1158 (1163)
+||+++|+||+++++++++|++++||+|+|+|+|++|+|+++|+|
T Consensus 81 ~rl~~~i~elv~~v~k~~~~~~~~~l~l~v~~~d~~~edv~vP~i 125 (125)
T PF09358_consen 81 ERLKMPISELVEEVTKKPIPPGQKYLVLEVSCEDEDGEDVEVPYI 125 (125)
T ss_dssp HHTTSBHHHHHHHHTSS---TT--EEEEEEEEE-TTS-EE---EE
T ss_pred HHhCCcHHHHHHHhcCCCCCCCceEEEEEEEEeCCCCCccCCCCC
Confidence 999999999999999999999999999999999999999999997
No 46
>PRK08328 hypothetical protein; Provisional
Probab=99.96 E-value=1.4e-29 Score=276.92 Aligned_cols=156 Identities=27% Similarity=0.448 Sum_probs=146.6
Q ss_pred CchhHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCc-h
Q 001074 154 TDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGK-N 232 (1163)
Q Consensus 154 ~~~d~~rYdRQi~l~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk-~ 232 (1163)
++.+.+||+||+++||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|||+++++|+|+ +
T Consensus 3 ~~~~~~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~ 82 (231)
T PRK08328 3 SERELERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNP 82 (231)
T ss_pred CHHHHHHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchH
Confidence 355668999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred HHHHHHHHHHHhcCCCEEEEeecCCCh----hhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEEE
Q 001074 233 RALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFC 308 (1163)
Q Consensus 233 Kaea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf~ 308 (1163)
|+++++++|+++||+++|+.+...+++ ++++++|+||+|.++.+.+..++++|++++ +|+|.+++.|++|++++
T Consensus 83 k~~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~--ip~i~g~~~g~~G~v~~ 160 (231)
T PRK08328 83 KPLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKG--IPLVHGAVEGTYGQVTT 160 (231)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEeeccCEEEEEE
Confidence 999999999999999999999887765 368899999999999999999999999999 99999999999999986
Q ss_pred EcC
Q 001074 309 DFG 311 (1163)
Q Consensus 309 d~g 311 (1163)
..+
T Consensus 161 ~~p 163 (231)
T PRK08328 161 IVP 163 (231)
T ss_pred ECC
Confidence 543
No 47
>PRK14851 hypothetical protein; Provisional
Probab=99.96 E-value=3.8e-30 Score=316.35 Aligned_cols=167 Identities=26% Similarity=0.389 Sum_probs=156.2
Q ss_pred ccCchhhhhhhcCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccc
Q 001074 554 INSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 633 (1163)
Q Consensus 554 ~~~Rydrq~~l~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~ 633 (1163)
..+||+||+.+||.+.|++|++++|+||||||+||+++++||++|| |+|+|+|.|.||+||||||++|+.+|||+
T Consensus 22 ~~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GV-----G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~ 96 (679)
T PRK14851 22 REAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGI-----GRFHIADFDQFEPVNVNRQFGARVPSFGR 96 (679)
T ss_pred HHHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCC-----CeEEEEcCCEecccccccCcCcChhhCCC
Confidence 3489999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCc--hHHHHHHHhhcccccccEEecCCCCcc
Q 001074 634 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDN--VNARLYVDQRCLYFQKPLLESGTLGAK 711 (1163)
Q Consensus 634 ~Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn--~~aR~~v~~~c~~~~~PlI~sgt~G~~ 711 (1163)
+|+++++++++++||+++|+++...+++++. ++|++++|+||+|+|| .++|++++..|+.+++|+|.+|+.|+.
T Consensus 97 ~Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~----~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~ 172 (679)
T PRK14851 97 PKLAVMKEQALSINPFLEITPFPAGINADNM----DAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYS 172 (679)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEecCCChHHH----HHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccccc
Confidence 9999999999999999999999999986432 5789999999999997 578999999999999999999999999
Q ss_pred cceEEEeCCcccccCCCCC
Q 001074 712 CNTQMVIPHLTENYGASRD 730 (1163)
Q Consensus 712 G~v~viip~~t~~y~~~~d 730 (1163)
|++.++.|+ +.||.|.-+
T Consensus 173 g~~~~~~p~-~~~~~~~~~ 190 (679)
T PRK14851 173 SAMLVFTPQ-GMGFDDYFN 190 (679)
T ss_pred ceEEEEcCC-CCCHhHhcc
Confidence 999999997 677766443
No 48
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=99.96 E-value=1.5e-29 Score=277.82 Aligned_cols=148 Identities=23% Similarity=0.358 Sum_probs=141.4
Q ss_pred hhhhhhhhcc--CHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHH
Q 001074 159 DLHSRQLAVY--GRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALA 236 (1163)
Q Consensus 159 ~rYdRQi~l~--G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea 236 (1163)
+||+||+++| |.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+++||+||++++++|+|++||++
T Consensus 3 ~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~ 82 (240)
T TIGR02355 3 LRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVES 82 (240)
T ss_pred cceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHH
Confidence 6999999996 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEeecCCCh----hhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEEE
Q 001074 237 SVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFC 308 (1163)
Q Consensus 237 ~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf~ 308 (1163)
++++|+++||+++|+.+...+++ +++.++|+||+|.++.+.+..+|++|++++ +|||++++.|+.|++.+
T Consensus 83 a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~--ip~v~~~~~g~~G~v~~ 156 (240)
T TIGR02355 83 AKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAK--VPLVSGAAIRMEGQVSV 156 (240)
T ss_pred HHHHHHHHCCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEEEecccEeEEEE
Confidence 99999999999999999988875 467899999999999999999999999999 99999999999998753
No 49
>PRK14852 hypothetical protein; Provisional
Probab=99.96 E-value=7.9e-30 Score=316.45 Aligned_cols=166 Identities=25% Similarity=0.410 Sum_probs=155.7
Q ss_pred ccCchhhhhhhcCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccc
Q 001074 554 INSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 633 (1163)
Q Consensus 554 ~~~Rydrq~~l~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~ 633 (1163)
...||+||+.+||.++|+||++++|+||||||+||+++++||++|| |+|+|+|.|.||.||||||++|+.+|||+
T Consensus 311 ~~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGV-----G~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~ 385 (989)
T PRK14852 311 TDIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGI-----GNFNLADFDAYSPVNLNRQYGASIASFGR 385 (989)
T ss_pred HHHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCC-----CeEEEEcCCEecccccccccCCChhhCCC
Confidence 3578999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCch--HHHHHHHhhcccccccEEecCCCCcc
Q 001074 634 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNV--NARLYVDQRCLYFQKPLLESGTLGAK 711 (1163)
Q Consensus 634 ~Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~--~aR~~v~~~c~~~~~PlI~sgt~G~~ 711 (1163)
+|+++++++++++||+++|+++...+.+++. ++|++++|+||+|+|++ ++|++++..|+.+++|+|.+|..|++
T Consensus 386 ~Kaevaa~~l~~INP~v~I~~~~~~I~~en~----~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~ 461 (989)
T PRK14852 386 GKLDVMTERALSVNPFLDIRSFPEGVAAETI----DAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYS 461 (989)
T ss_pred hHHHHHHHHHHHHCCCCeEEEEecCCCHHHH----HHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccC
Confidence 9999999999999999999999999977543 67899999999999984 67889999999999999999999999
Q ss_pred cceEEEeCCcccccCCCC
Q 001074 712 CNTQMVIPHLTENYGASR 729 (1163)
Q Consensus 712 G~v~viip~~t~~y~~~~ 729 (1163)
|++.++.|+. .||.|.-
T Consensus 462 g~v~v~~p~~-~~~~~~f 478 (989)
T PRK14852 462 CALLVFMPGG-MNFDSYF 478 (989)
T ss_pred eeEEEEcCCC-CCHHHhC
Confidence 9999999874 7887753
No 50
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.96 E-value=3.8e-29 Score=276.68 Aligned_cols=164 Identities=25% Similarity=0.421 Sum_probs=147.9
Q ss_pred cCchhhhhhhcCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccch
Q 001074 555 NSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 634 (1163)
Q Consensus 555 ~~Rydrq~~l~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~ 634 (1163)
..||+||.++||.++|++|++++|+|||+||+||+++++||++|| |+|+|+|+|.|+.||||||+++..+|||++
T Consensus 10 ~~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GV-----g~itLiD~D~V~~sNlnRQ~~~~~~~vG~~ 84 (268)
T PRK15116 10 RQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGI-----GAITLIDMDDVCVTNTNRQIHALRDNVGLA 84 (268)
T ss_pred HHHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCC-----CEEEEEeCCEecccccccccccChhhcChH
Confidence 369999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhh-ccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCcccc
Q 001074 635 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFW-ENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 713 (1163)
Q Consensus 635 Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~-~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G~ 713 (1163)
|++++++++.++||+++|+++...+.+++. ++++ .++|+||+|+|++.++..+++.|+.+++|+|.+|..|.+..
T Consensus 85 Kve~~~~rl~~INP~~~V~~i~~~i~~e~~----~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k~d 160 (268)
T PRK15116 85 KAEVMAERIRQINPECRVTVVDDFITPDNV----AEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQID 160 (268)
T ss_pred HHHHHHHHHHhHCCCcEEEEEecccChhhH----HHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccCCC
Confidence 999999999999999999999887775442 2334 57999999999999999999999999999999988887776
Q ss_pred -eEEEeCCcccccCC
Q 001074 714 -TQMVIPHLTENYGA 727 (1163)
Q Consensus 714 -v~viip~~t~~y~~ 727 (1163)
+++-+-++...+.|
T Consensus 161 p~~~~~~di~~t~~~ 175 (268)
T PRK15116 161 PTQIQVVDLAKTIQD 175 (268)
T ss_pred CCeEEEEeeecccCC
Confidence 45666666666644
No 51
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=99.95 E-value=4.4e-27 Score=256.42 Aligned_cols=227 Identities=17% Similarity=0.227 Sum_probs=184.2
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecCCC-
Q 001074 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLT- 258 (1163)
Q Consensus 180 ~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~l~- 258 (1163)
+|+|+|+||+|+|++|||+++|||+|+|+|.|.|+.+||+|||+++++|+|++||++++++|+++||+++|+.+...++
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999987762
Q ss_pred -----hhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEcCCceEEEcCCCCCCcceeecccc
Q 001074 259 -----KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGEDPHTGIIASIS 333 (1163)
Q Consensus 259 -----~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf~d~g~~f~v~d~~ge~p~~~~I~~I~ 333 (1163)
++++++||+||.|.|+.+.+..+|++|+.++ +|||.+++.|+.|++++..+....+.+....++
T Consensus 81 ~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~--iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~~~--------- 149 (234)
T cd01484 81 EQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLI--VPLIESGTEGFKGNAQVILPGMTECIECTLYPP--------- 149 (234)
T ss_pred hhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEcccCCceEEEEEcCCCCCCcccCCCCC---------
Confidence 4688999999999999999999999999999 999999999999999876643111111000000
Q ss_pred cCCCceeecccccccccccCCeeEEEeeccccccCCCCCccccccCcceeeeccccccccceeecceEEEeecCeeeccc
Q 001074 334 NDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQPKVLNFK 413 (1163)
Q Consensus 334 ~~~~~lv~~~d~~rh~~~dgd~V~f~ev~gm~eln~~~~~~i~~~~~~~f~i~~Dt~~f~~y~~gg~~~qvk~p~~i~fk 413 (1163)
. +...-+
T Consensus 150 ------------------------------------~-------------------------------------~~~p~C 156 (234)
T cd01484 150 ------------------------------------Q-------------------------------------KNFPMC 156 (234)
T ss_pred ------------------------------------C-------------------------------------CCCCcc
Confidence 0 000001
Q ss_pred chHhhhcCCCCcccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHH
Q 001074 414 PLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATNINESLGDGRVEDINTKLLR 493 (1163)
Q Consensus 414 sL~e~L~~p~~~l~~d~~k~~~~~~l~~~~~aL~~F~~~~gr~P~~~~~~Da~~l~~ia~~i~~~~~~~~~~~i~~~li~ 493 (1163)
+++. .| ...-|-...|.+.|+ .+..+.+.+.+.|+....+++ +..++...++
T Consensus 157 ti~~---~P-------------~~~~hci~~a~~~~~---------d~~~~~~~i~~~a~~ra~~~~---i~~~~~~~~~ 208 (234)
T cd01484 157 TIAS---MP-------------RLPEHCIEWARMLQW---------DDPEHIQFIFQASNERASQYN---IRGVTYFLTK 208 (234)
T ss_pred ccCC---CC-------------CCchHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHHcC---CCCcCHHHHH
Confidence 1111 11 123577777777766 356788888998988888876 4567888999
Q ss_pred HHHhhcccccCchhhHhhhhhhHHH
Q 001074 494 HFAFGARAVLNPMAAMFGGIVGQEV 518 (1163)
Q Consensus 494 ~~~~~~~~el~PvaA~iGGiaAQEV 518 (1163)
.++...-+.++.+.|+++|++.-|+
T Consensus 209 ~i~~~iipai~tTnaiia~~~~~e~ 233 (234)
T cd01484 209 GVAGRIIPAVATTNAVVAGVCALEV 233 (234)
T ss_pred HHhcCeecchhhHHHHHHHHHHHhh
Confidence 9999999999999999999999886
No 52
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.95 E-value=2.7e-28 Score=265.58 Aligned_cols=155 Identities=29% Similarity=0.439 Sum_probs=141.1
Q ss_pred cCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHH
Q 001074 565 FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAT 644 (1163)
Q Consensus 565 ~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~ 644 (1163)
+|.++|++|++++|+|+|+||+||+++++|+++|| |+|+|+|.|.|+.||||||++++.+|||++|+++++++++
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GV-----g~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~ 75 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGV-----GKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIR 75 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCC-----CEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHH
Confidence 69999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred hhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCcccc-eEEEeCCccc
Q 001074 645 SINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN-TQMVIPHLTE 723 (1163)
Q Consensus 645 ~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G~-v~viip~~t~ 723 (1163)
++||+++|+++...+.+++.. +-+..++|+||+|+|+..+|..+++.|+.+++|+|.++..|.+.. +++.+.++.+
T Consensus 76 ~inP~~~V~~~~~~i~~~~~~---~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~dp~~i~i~di~~ 152 (231)
T cd00755 76 DINPECEVDAVEEFLTPDNSE---DLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGKLDPTRIRVADISK 152 (231)
T ss_pred HHCCCcEEEEeeeecCHhHHH---HHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCCeEEEccEec
Confidence 999999999999988865431 223357999999999999999999999999999999999888776 6777777776
Q ss_pred ccCC
Q 001074 724 NYGA 727 (1163)
Q Consensus 724 ~y~~ 727 (1163)
++.|
T Consensus 153 t~~~ 156 (231)
T cd00755 153 TSGD 156 (231)
T ss_pred cccC
Confidence 6654
No 53
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=99.95 E-value=1.5e-27 Score=274.16 Aligned_cols=151 Identities=23% Similarity=0.370 Sum_probs=142.9
Q ss_pred Hhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccC--chH
Q 001074 158 EDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIG--KNR 233 (1163)
Q Consensus 158 ~~rYdRQi~l--~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiG--k~K 233 (1163)
++||+||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|.|.|+++||+||++++++|+| ++|
T Consensus 2 ~~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~K 81 (339)
T PRK07688 2 NERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPK 81 (339)
T ss_pred cchhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcH
Confidence 3699999988 999999999999999999999999999999999999999999999999999999999999995 599
Q ss_pred HHHHHHHHHHhcCCCEEEEeecCCCh----hhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEEEE
Q 001074 234 ALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCD 309 (1163)
Q Consensus 234 aea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf~d 309 (1163)
|++++++|+++||+++|+.....+++ ++++++|+||+|.++.+.+..+|++|++++ +|||++++.|++|+++..
T Consensus 82 a~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~--iP~i~~~~~g~~G~~~~~ 159 (339)
T PRK07688 82 AVAAKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYG--IPWIYGACVGSYGLSYTI 159 (339)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhC--CCEEEEeeeeeeeEEEEE
Confidence 99999999999999999999888865 468899999999999999999999999999 999999999999997754
Q ss_pred c
Q 001074 310 F 310 (1163)
Q Consensus 310 ~ 310 (1163)
.
T Consensus 160 ~ 160 (339)
T PRK07688 160 I 160 (339)
T ss_pred C
Confidence 3
No 54
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=99.95 E-value=1.4e-27 Score=274.09 Aligned_cols=151 Identities=23% Similarity=0.417 Sum_probs=142.7
Q ss_pred Hhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccC--chH
Q 001074 158 EDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIG--KNR 233 (1163)
Q Consensus 158 ~~rYdRQi~l--~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiG--k~K 233 (1163)
++||+||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|.|.|+++||+||++++++|+| ++|
T Consensus 2 ~~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~K 81 (338)
T PRK12475 2 QERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPK 81 (338)
T ss_pred cchhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccH
Confidence 4699999998 899999999999999999999999999999999999999999999999999999999999985 899
Q ss_pred HHHHHHHHHHhcCCCEEEEeecCCCh----hhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEEEE
Q 001074 234 ALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCD 309 (1163)
Q Consensus 234 aea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf~d 309 (1163)
|++++++|+++||+++|+++..++++ +.++++|+||+|.++.+.+..+|++|++++ +|+|++++.|++|+++..
T Consensus 82 a~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~--ip~i~~~~~g~~G~~~~~ 159 (338)
T PRK12475 82 AIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYN--IPWIYGGCVGSYGVTYTI 159 (338)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEEEecccEEEEEEE
Confidence 99999999999999999999888763 467899999999999999999999999999 999999999999998754
Q ss_pred c
Q 001074 310 F 310 (1163)
Q Consensus 310 ~ 310 (1163)
.
T Consensus 160 ~ 160 (338)
T PRK12475 160 I 160 (338)
T ss_pred C
Confidence 3
No 55
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.95 E-value=8.1e-28 Score=259.53 Aligned_cols=163 Identities=28% Similarity=0.377 Sum_probs=142.3
Q ss_pred cCchhhhhhhcCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccch
Q 001074 555 NSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 634 (1163)
Q Consensus 555 ~~Rydrq~~l~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~ 634 (1163)
+.-+.++...||.++|++|++++|+||||||+||+++++|+++|+ |+|+|+|.|.|+.+||+||+++ .+|||++
T Consensus 8 ~~~~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~ 81 (212)
T PRK08644 8 EEFEAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGV-----GNLKLVDFDVVEPSNLNRQQYF-ISQIGMP 81 (212)
T ss_pred HHHHHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCC-----CeEEEEeCCEeccccccccEee-hhhCCCh
Confidence 344667778899999999999999999999999999999999999 9999999999999999999976 6799999
Q ss_pred HHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccc-cccEEecCCCCcccc
Q 001074 635 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF-QKPLLESGTLGAKCN 713 (1163)
Q Consensus 635 Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~-~~PlI~sgt~G~~G~ 713 (1163)
|+++++++++++||+++|+++..++.+++. +++++++|+||+|+||.++|.++++.|+++ ++|+|.++..|..|+
T Consensus 82 Ka~~a~~~l~~lnp~v~v~~~~~~i~~~~~----~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~ 157 (212)
T PRK08644 82 KVEALKENLLEINPFVEIEAHNEKIDEDNI----EELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYGD 157 (212)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeeecCHHHH----HHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccCC
Confidence 999999999999999999999988875432 467899999999999999999999999998 999998766666666
Q ss_pred eEEEeCC-c-ccccCC
Q 001074 714 TQMVIPH-L-TENYGA 727 (1163)
Q Consensus 714 v~viip~-~-t~~y~~ 727 (1163)
+..+.|. . ..||.|
T Consensus 158 ~~~~~~~~~~~~~~~~ 173 (212)
T PRK08644 158 SNSIKTRRIGKNFYIV 173 (212)
T ss_pred ceEEEecCCCCCeeEC
Confidence 6555443 2 445533
No 56
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.95 E-value=1.2e-27 Score=240.46 Aligned_cols=135 Identities=34% Similarity=0.653 Sum_probs=123.0
Q ss_pred hcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEE
Q 001074 574 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 653 (1163)
Q Consensus 574 ~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~ 653 (1163)
+++||+|+|+||+||+++++|+++|+ |+|+|+|.|.|+.+||+||++|+.+|||++|+++++++++++||+++|+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv-----~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~ 75 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGV-----GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVE 75 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTT-----SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCC-----CceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeee
Confidence 57899999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCcccceEEE
Q 001074 654 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMV 717 (1163)
Q Consensus 654 ~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G~v~vi 717 (1163)
++..++.++.. .++++++|+||+|+|+.++|.++++.|+.+++|+|++|+.|+.|+++.+
T Consensus 76 ~~~~~~~~~~~----~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~~ 135 (135)
T PF00899_consen 76 AIPEKIDEENI----EELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVMV 135 (135)
T ss_dssp EEESHCSHHHH----HHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEEE
T ss_pred eeecccccccc----cccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEEC
Confidence 99999854321 5677899999999999999999999999999999999999999998653
No 57
>PRK07877 hypothetical protein; Provisional
Probab=99.95 E-value=1.9e-27 Score=293.15 Aligned_cols=160 Identities=21% Similarity=0.317 Sum_probs=146.8
Q ss_pred cCchhhhhhhcCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcc-cccCCCccEEEecCCcccccCcCcccCcccCcccc
Q 001074 555 NSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMG-VSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 633 (1163)
Q Consensus 555 ~~Rydrq~~l~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~G-v~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~ 633 (1163)
..||+||+.+||.++|++|++++|+||||| +||.++.+||++| | |+|+|+|.|.||.|||||| +|+..|||+
T Consensus 87 ~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvv-----G~l~lvD~D~ve~sNLnRq-~~~~~diG~ 159 (722)
T PRK07877 87 AVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLC-----GELRLADFDTLELSNLNRV-PAGVFDLGV 159 (722)
T ss_pred HHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCC-----CeEEEEcCCEEcccccccc-cCChhhccc
Confidence 479999999999999999999999999997 9999999999999 6 9999999999999999999 589999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCcccc
Q 001074 634 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 713 (1163)
Q Consensus 634 ~Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G~ 713 (1163)
+|+++|+++++++||+++|+++..++++++. ++|++++|+||||+||+++|..+++.|+.+++|+|.++..+ |.
T Consensus 160 ~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~----~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~~--g~ 233 (722)
T PRK07877 160 NKAVVAARRIAELDPYLPVEVFTDGLTEDNV----DAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMATSDR--GL 233 (722)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeccCCHHHH----HHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC--CC
Confidence 9999999999999999999999999997553 67889999999999999999999999999999999888555 65
Q ss_pred eE--E--EeCCcccccCCC
Q 001074 714 TQ--M--VIPHLTENYGAS 728 (1163)
Q Consensus 714 v~--v--iip~~t~~y~~~ 728 (1163)
+. . +.| .++||.|-
T Consensus 234 ~~~e~~~~~p-~~pc~~cl 251 (722)
T PRK07877 234 LDVERFDLEP-DRPILHGL 251 (722)
T ss_pred cCcceeeeCC-CCceeecc
Confidence 42 2 345 58999994
No 58
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.95 E-value=3.4e-27 Score=300.23 Aligned_cols=154 Identities=21% Similarity=0.329 Sum_probs=146.9
Q ss_pred hHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCC-----CeEEEEeCCccCcccCCcccccCCCccCc
Q 001074 157 DEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGV-----KSVTLHDEGTVELWDLSSNFVFSDNDIGK 231 (1163)
Q Consensus 157 d~~rYdRQi~l~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGV-----g~itLvD~d~V~~sDL~rqff~~~~DiGk 231 (1163)
..+|||||+++||.++|++|++++|+|+|+||+|||++|||+++|| |+|+|+|.|.|+.+||+|||+++++|||+
T Consensus 398 ~~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk 477 (1008)
T TIGR01408 398 RGDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGK 477 (1008)
T ss_pred hhhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCc
Confidence 4589999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeecCCC--------hhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeeccee
Q 001074 232 NRALASVQKLQELNNAVVLSTLTSKLT--------KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLF 303 (1163)
Q Consensus 232 ~Kaea~~~~L~eLNp~V~V~~~~~~l~--------~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~ 303 (1163)
+||++++++|+++||.++|+++...++ ++++.++|+||.|.|+.+.+..+|+.|+.++ +|+|.+++.|+.
T Consensus 478 ~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~--iPli~~gt~G~~ 555 (1008)
T TIGR01408 478 PKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFL--KPLLESGTLGTK 555 (1008)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEeccCce
Confidence 999999999999999999999987663 3578899999999999999999999999999 999999999999
Q ss_pred EEEEEEcCC
Q 001074 304 GSVFCDFGP 312 (1163)
Q Consensus 304 G~vf~d~g~ 312 (1163)
|++.+..+.
T Consensus 556 G~v~v~ip~ 564 (1008)
T TIGR01408 556 GNTQVVVPH 564 (1008)
T ss_pred eeEEEEeCC
Confidence 999988764
No 59
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.94 E-value=3.1e-27 Score=282.31 Aligned_cols=155 Identities=21% Similarity=0.257 Sum_probs=133.7
Q ss_pred CchhhhhhhcCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcc---c
Q 001074 556 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNI---G 632 (1163)
Q Consensus 556 ~Rydrq~~l~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dI---G 632 (1163)
-+.-+.+.+-+.. .++|+++||+|||||||||+++++|+++|| |+|++||.|+|+.|||+||+||+.+|+ |
T Consensus 320 lkLmkWRllP~l~-~ekL~~~kVLIvGaGGLGs~VA~~La~~GV-----g~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~G 393 (664)
T TIGR01381 320 LKLMKWRLHPDLQ-LERYSQLKVLLLGAGTLGCNVARCLIGWGV-----RHITFVDNGKVSYSNPVRQSLSNFEDCLLGG 393 (664)
T ss_pred HHHHhhhcCChhh-HHHHhcCeEEEECCcHHHHHHHHHHHHcCC-----CeEEEEcCCEECCCccccccccchhhhhhcC
Confidence 3444554443333 389999999999999999999999999999 999999999999999999999999999 9
Q ss_pred chHHHHHHHHHHhhCCCCeEEEEeccC-------Cccc-ccccc-----hhhhccCCEEEEccCchHHHHHHHhhccccc
Q 001074 633 QAKSTVAASAATSINPRLNIEALQNRV-------GPET-ENVFD-----DTFWENITCVINALDNVNARLYVDQRCLYFQ 699 (1163)
Q Consensus 633 ~~Ka~vaa~~l~~~np~~~I~~~~~~v-------~~~~-e~~~~-----~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~ 699 (1163)
++||++|+++++++||+++|+++..++ +++. +.+.. .++++++|+|++|+||.++|++++..|+.++
T Consensus 394 k~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~ 473 (664)
T TIGR01381 394 RGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHK 473 (664)
T ss_pred CcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999998884 3321 11111 4678999999999999999999999999999
Q ss_pred ccEEecCCCCcccceEEE
Q 001074 700 KPLLESGTLGAKCNTQMV 717 (1163)
Q Consensus 700 ~PlI~sgt~G~~G~v~vi 717 (1163)
+|+|+++ .|+.|++.+.
T Consensus 474 kplI~aA-lGfdg~lvmr 490 (664)
T TIGR01381 474 KIAISAA-LGFDSYVVMR 490 (664)
T ss_pred CCEEEEE-eccceEEEEE
Confidence 9999985 8998887665
No 60
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.94 E-value=8.1e-27 Score=258.24 Aligned_cols=142 Identities=17% Similarity=0.306 Sum_probs=132.7
Q ss_pred chhHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHH
Q 001074 155 DIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRA 234 (1163)
Q Consensus 155 ~~d~~rYdRQi~l~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Ka 234 (1163)
+...+||+||.++||.++|++|++++|+|+|+||+|+++|++|+++|||+|||+|.|.|+.+|++||+++..+|+|++||
T Consensus 7 ~~~~~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kv 86 (268)
T PRK15116 7 DAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKA 86 (268)
T ss_pred HHHHHHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHH
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeecCCChh----hc-CCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEee
Q 001074 235 LASVQKLQELNNAVVLSTLTSKLTKE----QL-SDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAE 298 (1163)
Q Consensus 235 ea~~~~L~eLNp~V~V~~~~~~l~~e----~l-~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~ 298 (1163)
++++++++++||+++|+.+...++++ ++ .+||+||+|.++...+..|+++|++++ +|||.++
T Consensus 87 e~~~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~--ip~I~~g 153 (268)
T PRK15116 87 EVMAERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNK--IPLVTTG 153 (268)
T ss_pred HHHHHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEEC
Confidence 99999999999999999998776643 34 479999999999999999999999999 9999764
No 61
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=99.94 E-value=1e-26 Score=258.14 Aligned_cols=158 Identities=30% Similarity=0.433 Sum_probs=148.8
Q ss_pred CCchhHhhhhhhhhccC--HHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccC
Q 001074 153 QTDIDEDLHSRQLAVYG--RETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIG 230 (1163)
Q Consensus 153 ~~~~d~~rYdRQi~l~G--~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiG 230 (1163)
..+++.+||+||+++|+ .++|++|+.++|+|+|+||+|++++++|+++|||+++|+|+|.|+.+||+||++++++|+|
T Consensus 3 ~~~~~~~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~dig 82 (254)
T COG0476 3 LSDEEIERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADVG 82 (254)
T ss_pred ccHHHHHhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeecccccC
Confidence 35778899999999955 4459999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhcCCCEEEEeecCCCh----hhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEE
Q 001074 231 KNRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSV 306 (1163)
Q Consensus 231 k~Kaea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~v 306 (1163)
++||+++++.|+++||.+++..+...++. +++.++|+|++|+++++.+..+|++|+.++ +|++++++.|+.|++
T Consensus 83 ~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~--~pli~~~~~~~~g~~ 160 (254)
T COG0476 83 KPKAEVAAKALRKLNPLVEVVAYLERLDEENAEELIAQFDVVLDCTDNFETRYLINDACVKLG--IPLVHGGAIGFEGQV 160 (254)
T ss_pred CcHHHHHHHHHHHhCCCCeEEEeecccChhhHHHHhccCCEEEECCCCHHHHHHHHHHHHHhC--CCeEeeeeccceEEE
Confidence 99999999999999999999999987764 467899999999999999999999999999 999999999999999
Q ss_pred EEEcCC
Q 001074 307 FCDFGP 312 (1163)
Q Consensus 307 f~d~g~ 312 (1163)
++..+.
T Consensus 161 ~~~~~~ 166 (254)
T COG0476 161 TVIIPG 166 (254)
T ss_pred EEEecC
Confidence 998865
No 62
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.94 E-value=3e-27 Score=250.44 Aligned_cols=164 Identities=25% Similarity=0.395 Sum_probs=147.7
Q ss_pred ccCchhhhhhhcCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccc
Q 001074 554 INSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 633 (1163)
Q Consensus 554 ~~~Rydrq~~l~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~ 633 (1163)
...||.|..+++|.++.++|++++|+|||+||+|++++..|||+|+ |+|+|||+|.|+++|+|||......+||+
T Consensus 9 ~~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGi-----g~itlID~D~v~vTN~NRQi~A~~~~iGk 83 (263)
T COG1179 9 YRQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGI-----GRITLIDMDDVCVTNTNRQIHALLGDIGK 83 (263)
T ss_pred HHHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCC-----CeEEEEecccccccccchhhHhhhhhccc
Confidence 3579999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCcccc
Q 001074 634 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 713 (1163)
Q Consensus 634 ~Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G~ 713 (1163)
+|+++++++++.+||+++|+++...+++++.+ +-+..++|+||||+|+++++..+-..|+.+++|+|.+|..|.+-.
T Consensus 84 ~Kv~vm~eri~~InP~c~V~~~~~f~t~en~~---~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~k~D 160 (263)
T COG1179 84 PKVEVMKERIKQINPECEVTAINDFITEENLE---DLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGGKLD 160 (263)
T ss_pred HHHHHHHHHHHhhCCCceEeehHhhhCHhHHH---HHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccCCCC
Confidence 99999999999999999999999999987743 234468999999999999999999999999999999887776654
Q ss_pred -eEEEeCCccccc
Q 001074 714 -TQMVIPHLTENY 725 (1163)
Q Consensus 714 -v~viip~~t~~y 725 (1163)
+++-+-++...+
T Consensus 161 PTri~v~DiskT~ 173 (263)
T COG1179 161 PTRIQVADISKTI 173 (263)
T ss_pred CceEEeeechhhc
Confidence 556555544333
No 63
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.94 E-value=6.7e-27 Score=249.97 Aligned_cols=122 Identities=30% Similarity=0.475 Sum_probs=113.5
Q ss_pred chhHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHH
Q 001074 155 DIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRA 234 (1163)
Q Consensus 155 ~~d~~rYdRQi~l~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Ka 234 (1163)
+.+.+||||||++||.++|+||++++|||+|+||+|+|++|||+++|||+|+|+|+|.|+.+||+|||++++ |+|++||
T Consensus 3 ~~E~~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvGk~KA 81 (287)
T PTZ00245 3 DAEAVRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAGGTRG 81 (287)
T ss_pred HHHHHHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-ccCCcHH
Confidence 456789999999999999999999999999999999999999999999999999999999999999999997 6899999
Q ss_pred HHHHHHHHHhcCCCEEEEeecCCChhhcCCCcEEEEecCChhHHH
Q 001074 235 LASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAI 279 (1163)
Q Consensus 235 ea~~~~L~eLNp~V~V~~~~~~l~~e~l~~fdvVI~~~~~~~~~~ 279 (1163)
++++++|+++||+|+|+.....+++ .++|++||+++.+.+...
T Consensus 82 eaAa~~L~eLNP~V~V~~i~~rld~--~n~fqvvV~~~~~le~av 124 (287)
T PTZ00245 82 ARALGALQRLNPHVSVYDAVTKLDG--SSGTRVTMAAVITEEDAV 124 (287)
T ss_pred HHHHHHHHHHCCCcEEEEcccccCC--cCCceEEEEEcccHHHHH
Confidence 9999999999999999999888876 348999999998766544
No 64
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4e-27 Score=265.90 Aligned_cols=361 Identities=20% Similarity=0.299 Sum_probs=231.5
Q ss_pred HHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEE
Q 001074 171 ETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVL 250 (1163)
Q Consensus 171 e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V 250 (1163)
+-++++.++||||||+||+|||++|||++.|+++|+|+|-|.++.+||+|||||+.+|||++||.++++..+++||.+++
T Consensus 5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l 84 (603)
T KOG2013|consen 5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKL 84 (603)
T ss_pred HHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCce
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCh-----hhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEcCCceEEEcCC-CCCC
Q 001074 251 STLTSKLTK-----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVD-GEDP 324 (1163)
Q Consensus 251 ~~~~~~l~~-----e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf~d~g~~f~v~d~~-ge~p 324 (1163)
..+...+.+ +|+.+||+|.-|.|+.+.|..+|+.|...+ +|+|.+++.|+.|++.+.....-.++|-. .+.|
T Consensus 85 ~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~--vPLIesGt~Gf~GQv~~ii~GkTECyeC~pK~~~ 162 (603)
T KOG2013|consen 85 VPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAAS--VPLIESGTGGFLGQVQVIIKGKTECYECIPKPVP 162 (603)
T ss_pred EeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhc--CCceecCcccccceEEEEecCCcceecccCCCCC
Confidence 999887643 688899999999999999999999999999 99999999999999998654344455544 3557
Q ss_pred cceeecccccCCCceeecccccccc-----c-ccC-------CeeEEEeeccccccCCCCCcc----------ccc--cC
Q 001074 325 HTGIIASISNDNPALVSCVDDERLE-----F-QDG-------DLVVFSEVHGMTELNDGKPRK----------IKS--AR 379 (1163)
Q Consensus 325 ~~~~I~~I~~~~~~lv~~~d~~rh~-----~-~dg-------d~V~f~ev~gm~eln~~~~~~----------i~~--~~ 379 (1163)
.+..+.-|.+....-++|+-=-+|- | +++ |.+.-...+.|++-.....+. +.. .+
T Consensus 163 kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~~d~~~q~~~~d~~d~d~~e~~t~~~~~~~~et~d~~Er~~~i~~~~~~ 242 (603)
T KOG2013|consen 163 KTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFGEDDDDQYGRHDNADPDNCEDMTEEEAEAFRETEDLKERRESIVEIDKN 242 (603)
T ss_pred CcCCceEeecCCCCceeeeeehHhHHHHHHhccccccccccccccCchhhhccChhhhhhhccchHHHHHHHHHHHHhhc
Confidence 7777777876655666665211110 0 111 111111111221000000000 000 00
Q ss_pred c-c-eeeecccccccc---ceeec--ceEEEeecCeeecccchH-hhhcCC---CCcccccCcc------CC-CCChHHH
Q 001074 380 P-Y-SFTLEEDTTNYG---TYVKG--GIVTQVKQPKVLNFKPLR-EALEDP---GDFLLSDFSK------FD-RPPPLHL 441 (1163)
Q Consensus 380 ~-~-~f~i~~Dt~~f~---~y~~g--g~~~qvk~p~~i~fksL~-e~L~~p---~~~l~~d~~k------~~-~~~~l~~ 441 (1163)
. | .+.+ ++.-|. .|.++ ..|++.+.|..++|.+.. ..++.- .+.+.+.+.+ .+ ....+-.
T Consensus 243 ~~~~~~~i--~~klF~~dI~yl~~~e~~wk~r~~p~pl~~~~~i~~~~~t~ns~~q~~~~a~~~~~~v~~v~~~~~vf~~ 320 (603)
T KOG2013|consen 243 LDFGPFKI--FNKLFIYDIEYLLGMEALWKPRSRPVPLSIAEVISTSLETINSIVQSITSAQLNDQNVWTVDEGAVVFRL 320 (603)
T ss_pred cCCChhhh--hhHHHHHHHHHHHhhhhhccCCCCCCCcchhhccCCccccccchhhhccccccCCcceeeeccccHHHHH
Confidence 0 0 0011 111111 13222 246777777777665432 222110 0011111110 01 1122333
Q ss_pred HHHHHH-HHHHHhCCCCCCC--CHHHHHHHHHHHHHHHHhc-CCCCCCCCCHHHHHHHHhhcccccCchhhHhhhhhhHH
Q 001074 442 AFQALD-KFVSELGRFPVAG--SEEDAQKLISVATNINESL-GDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQE 517 (1163)
Q Consensus 442 ~~~aL~-~F~~~~gr~P~~~--~~~Da~~l~~ia~~i~~~~-~~~~~~~i~~~li~~~~~~~~~el~PvaA~iGGiaAQE 517 (1163)
+.++++ +..+..+++-..+ +..++-+|++-|..+..+. +. ...+.-.++.+|...-..++.++|+|||+..-|
T Consensus 321 ~i~~l~~~~~~~~~h~~l~fdKdd~~~~~FVaaaaNiRa~if~i---pmkS~Fdik~mAgnIipaIAtTNAiIagliv~e 397 (603)
T KOG2013|consen 321 SIQALDLRCPKESDHWYLIFDKDDASTMEFVAAAANIRAHIFGI---PMKSLFDIKQMAGNIIPAIATTNAIIAGLIVTE 397 (603)
T ss_pred HHHHhcccCCccCCCceEEEcCCcHHHHHHHHHHhhhhhhhhcc---chhhhhchHhHhcccchhhhhhhhHHHHHHHHH
Confidence 334431 1111112211222 2455666776665553332 21 111233478888888888999999999999999
Q ss_pred HHHhhcCCcccceeeeeeecc
Q 001074 518 VVKACSGKFHPLYQFFYFDSV 538 (1163)
Q Consensus 518 VIKaiTgkf~PI~q~~~fD~i 538 (1163)
.+|.|+|+|.-.+..|++-..
T Consensus 398 aiKvl~~~~~~~~~~f~~~~~ 418 (603)
T KOG2013|consen 398 AIKVLGGDFDDCNMIFLAKRP 418 (603)
T ss_pred HHHHhccchhcceeeEEccCC
Confidence 999999999999998888643
No 65
>PRK14852 hypothetical protein; Provisional
Probab=99.94 E-value=1.6e-26 Score=287.30 Aligned_cols=168 Identities=17% Similarity=0.147 Sum_probs=149.9
Q ss_pred ccccccCCCCCC---CchhHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccC
Q 001074 142 EVPIMTLGNSNQ---TDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDL 218 (1163)
Q Consensus 142 ~~~~~~~~~~~~---~~~d~~rYdRQi~l~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL 218 (1163)
..+.|..+.-.. .+.-+.+|+||+++||.++|+||++++|+|+|+||+|+++|++|+++|||+|+|+|.|.|+.+||
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNL 372 (989)
T PRK14852 293 TPGGVPLDMLKLETRDAYTDIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNL 372 (989)
T ss_pred CCCCCchHHHhHHHHHHHHHHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEeccccc
Confidence 344454443322 35567799999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecCCCh----hhcCCCcEEEEecCC--hhHHHHHHHHHHhcCCCc
Q 001074 219 SSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDIS--LDKAIEFDDFCHNHQPAI 292 (1163)
Q Consensus 219 ~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVI~~~~~--~~~~~~ln~~cr~~~~~I 292 (1163)
+|||+++.+|||++||++++++|+++||+|+|+++.+.+++ ++++++|+||+|.|+ .+.+..+++.|++++ |
T Consensus 373 NRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~--I 450 (989)
T PRK14852 373 NRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELG--I 450 (989)
T ss_pred ccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcC--C
Confidence 99999999999999999999999999999999999888864 478899999999986 456778888999999 9
Q ss_pred eeEEeeecceeEEEEEEcC
Q 001074 293 SFIKAEVRGLFGSVFCDFG 311 (1163)
Q Consensus 293 pfI~~~~~G~~G~vf~d~g 311 (1163)
|||.+++.|+.|++++..+
T Consensus 451 P~I~ag~~G~~g~v~v~~p 469 (989)
T PRK14852 451 PVITAGPLGYSCALLVFMP 469 (989)
T ss_pred CEEEeeccccCeeEEEEcC
Confidence 9999999999999997553
No 66
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.94 E-value=3.6e-26 Score=267.21 Aligned_cols=154 Identities=25% Similarity=0.369 Sum_probs=145.6
Q ss_pred CchhHhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCc
Q 001074 154 TDIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGK 231 (1163)
Q Consensus 154 ~~~d~~rYdRQi~l--~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk 231 (1163)
...+.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+++||+|||+++++|||+
T Consensus 109 s~~~~~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~ 188 (376)
T PRK08762 109 TDEQDERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQ 188 (376)
T ss_pred CHHHHHHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCC
Confidence 34556899999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeecCCCh----hhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEE
Q 001074 232 NRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVF 307 (1163)
Q Consensus 232 ~Kaea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf 307 (1163)
+||++++++|+++||+++|..+...+++ ++++++|+||.|+++.+.+..+|++|++++ +|||++++.|+.|++.
T Consensus 189 ~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~--ip~i~~~~~g~~g~v~ 266 (376)
T PRK08762 189 PKVDSAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLG--KPLVYGAVFRFEGQVS 266 (376)
T ss_pred cHHHHHHHHHHHHCCCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEeccCEEEEE
Confidence 9999999999999999999999888764 467899999999999999999999999999 9999999999999988
Q ss_pred EE
Q 001074 308 CD 309 (1163)
Q Consensus 308 ~d 309 (1163)
+-
T Consensus 267 ~~ 268 (376)
T PRK08762 267 VF 268 (376)
T ss_pred EE
Confidence 64
No 67
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=99.94 E-value=2.3e-25 Score=260.28 Aligned_cols=131 Identities=20% Similarity=0.361 Sum_probs=124.9
Q ss_pred eEEEEcCChHHHHHHHHHHHhCC-----CeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEee
Q 001074 180 NILVSGMQGLGAEIAKNLILAGV-----KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (1163)
Q Consensus 180 ~VlIiG~gglGsEiaKNLvlaGV-----g~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~ 254 (1163)
+|+|||+||+|+|++|||+++|| |+|+|+|.|.|+.+||+|||+++++|||++||++++++|+++||+++|+++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999998
Q ss_pred cCCC--------hhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEcCC
Q 001074 255 SKLT--------KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGP 312 (1163)
Q Consensus 255 ~~l~--------~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf~d~g~ 312 (1163)
..++ ++++.++|+||.|.|+.+.|..+++.|+.++ +|+|.+++.|+.|++.+-.+.
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~--iPli~~gt~G~~G~v~v~iP~ 144 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYR--KPLLESGTLGTKGNTQVVIPH 144 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhC--CCEEEEecccceeEEEEEeCC
Confidence 7664 3678899999999999999999999999999 999999999999999987764
No 68
>PRK14851 hypothetical protein; Provisional
Probab=99.93 E-value=3.9e-26 Score=281.11 Aligned_cols=157 Identities=13% Similarity=0.192 Sum_probs=147.7
Q ss_pred CCchhHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCch
Q 001074 153 QTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKN 232 (1163)
Q Consensus 153 ~~~~d~~rYdRQi~l~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~ 232 (1163)
..+...++|+||+++||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|.|.|+++||+|||+++.+|||++
T Consensus 18 ~~~~~~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~ 97 (679)
T PRK14851 18 AAEYREAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRP 97 (679)
T ss_pred HHHHHHHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCH
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeecCCCh----hhcCCCcEEEEecCC--hhHHHHHHHHHHhcCCCceeEEeeecceeEEE
Q 001074 233 RALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDIS--LDKAIEFDDFCHNHQPAISFIKAEVRGLFGSV 306 (1163)
Q Consensus 233 Kaea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVI~~~~~--~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~v 306 (1163)
|+++++++|+++||+++|+++...+++ ++++++|+||+|.|+ .+.+..+++.|++++ ||+|.+++.|+.|++
T Consensus 98 Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~--iP~i~~g~~G~~g~~ 175 (679)
T PRK14851 98 KLAVMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKG--IPVITAGPLGYSSAM 175 (679)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCC--CCEEEeecccccceE
Confidence 999999999999999999999998865 468899999999996 567889999999999 999999999999999
Q ss_pred EEEcC
Q 001074 307 FCDFG 311 (1163)
Q Consensus 307 f~d~g 311 (1163)
++..+
T Consensus 176 ~~~~p 180 (679)
T PRK14851 176 LVFTP 180 (679)
T ss_pred EEEcC
Confidence 97553
No 69
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.8e-25 Score=240.87 Aligned_cols=276 Identities=18% Similarity=0.275 Sum_probs=205.0
Q ss_pred cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCC
Q 001074 168 YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNA 247 (1163)
Q Consensus 168 ~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~ 247 (1163)
-+.|..+-|.+++|||+|+||+|+|++|||+++|++.+.++|.|.++.+||+|||+|++.|+|++||+++++.++...|.
T Consensus 30 ~~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~ 109 (422)
T KOG2015|consen 30 PSEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPG 109 (422)
T ss_pred CCHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCC
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeecCC---ChhhcCCCcEEEEecCChhHHHHHHHHHHhcCC--------CceeEEeeecceeEEEEEEcCCceEE
Q 001074 248 VVLSTLTSKL---TKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQP--------AISFIKAEVRGLFGSVFCDFGPEFTV 316 (1163)
Q Consensus 248 V~V~~~~~~l---~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~--------~IpfI~~~~~G~~G~vf~d~g~~f~v 316 (1163)
..|..+-..+ +.+|+++|++||+..|+.+.|+.||....+... -||+|.+++.|+.|.+.+.++.-..+
T Consensus 110 ~~v~~h~~kIqd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~arvI~Pg~TaC 189 (422)
T KOG2015|consen 110 CVVVPHRQKIQDKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHARVIYPGITAC 189 (422)
T ss_pred cEEeeeecchhcCCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeEEEecCccHH
Confidence 9999887665 568999999999999999999999987655321 27999999999999999988642112
Q ss_pred EcCCCC--CCcceeecccccCCCceeecccccccccccCCeeEEEeeccccccCCCCCccccccCcceeeeccccccccc
Q 001074 317 VDVDGE--DPHTGIIASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTNYGT 394 (1163)
Q Consensus 317 ~d~~ge--~p~~~~I~~I~~~~~~lv~~~d~~rh~~~dgd~V~f~ev~gm~eln~~~~~~i~~~~~~~f~i~~Dt~~f~~ 394 (1163)
.+-.-+ +|. +++ +|-.+ .+.|+.+.....|
T Consensus 190 ieCtldlyppq---------------------------vs~-------P~CTi-AntPRlpEHciEy------------- 221 (422)
T KOG2015|consen 190 IECTLDLYPPQ---------------------------VSY-------PMCTI-ANTPRLPEHCIEY------------- 221 (422)
T ss_pred HHhHHhhcCcc---------------------------cCc-------cccee-cCCCCCchHhhhh-------------
Confidence 111000 000 000 00000 0111111111111
Q ss_pred eeecceEEEeecCeeecccchHhhhcCCCCcccccCccCCCCChHHHHHHHHHHHHHHh-CCCCC-CCCHHHHHHHHHHH
Q 001074 395 YVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSEL-GRFPV-AGSEEDAQKLISVA 472 (1163)
Q Consensus 395 y~~gg~~~qvk~p~~i~fksL~e~L~~p~~~l~~d~~k~~~~~~l~~~~~aL~~F~~~~-gr~P~-~~~~~Da~~l~~ia 472 (1163)
..+ .++-+.. .-.|. ..+.++.+++++-+
T Consensus 222 ------------------v~l-------------------------------iqwpe~~~~g~~~~gdd~~hI~wi~er~ 252 (422)
T KOG2015|consen 222 ------------------VKL-------------------------------IQWPELNPFGVPLDGDDPEHIEWIVERS 252 (422)
T ss_pred ------------------hhh-------------------------------hcchhhCccCCCCCCCCHHHHHHHHHHH
Confidence 100 0111100 01222 23477888888877
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHhhcccccCchhhHhhhhhhHHHHHhhcCCcccceeeeeeeccCCCCC
Q 001074 473 TNINESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLPT 543 (1163)
Q Consensus 473 ~~i~~~~~~~~~~~i~~~li~~~~~~~~~el~PvaA~iGGiaAQEVIKaiTgkf~PI~q~~~fD~ie~Lp~ 543 (1163)
.+...++. ...++..++.-+....-...+.++|+|++..|-|++|++|.-+.|++||+.|++.+++-.
T Consensus 253 ~eRA~ef~---I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~~~~~Nym~~n~~eG~yt 320 (422)
T KOG2015|consen 253 NERANEFN---ITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTATDDPLDNYMNYNAEEGIYT 320 (422)
T ss_pred HHHhhhcc---cccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcchhhhhheeeecccceeE
Confidence 77766654 345677777777776666777888999999999999999999999999999999998654
No 70
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.93 E-value=3.5e-26 Score=231.99 Aligned_cols=133 Identities=37% Similarity=0.624 Sum_probs=126.1
Q ss_pred cEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEEEEe
Q 001074 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 656 (1163)
Q Consensus 577 kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~~~~ 656 (1163)
+|+||||||+||+++++|+++|+ |+|+|+|.|.++.+||+||++++.+|+|++|+++++++++++||+++|+.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-----~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~ 75 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-----GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVP 75 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-----CEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCcccceEEEe
Q 001074 657 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVI 718 (1163)
Q Consensus 657 ~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G~v~vii 718 (1163)
..+.+... .++++++|+||+|.|+.++|.++++.|+++++|+|++|+.|+.|+++++.
T Consensus 76 ~~~~~~~~----~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 76 EGISEDNL----DDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred eecChhhH----HHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence 88765332 57789999999999999999999999999999999999999999999876
No 71
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.93 E-value=1.2e-25 Score=249.45 Aligned_cols=133 Identities=22% Similarity=0.316 Sum_probs=119.6
Q ss_pred cEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCc--ccchHHHHHHHHHHhhCCCCeEEE
Q 001074 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWN--IGQAKSTVAASAATSINPRLNIEA 654 (1163)
Q Consensus 577 kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~d--IG~~Ka~vaa~~l~~~np~~~I~~ 654 (1163)
||+||||||+||+++++|+++|| |+|+|+|.|.|+.|||+||+||+.+| +|++||++|+++|+++||+++|++
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV-----g~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~ 75 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV-----RHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATG 75 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEE
Confidence 69999999999999999999999 99999999999999999999999999 999999999999999999999999
Q ss_pred EeccCC-------c--------ccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCcccceEEE
Q 001074 655 LQNRVG-------P--------ETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMV 717 (1163)
Q Consensus 655 ~~~~v~-------~--------~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G~v~vi 717 (1163)
+...+. + +.+++ .++++++|+|++|+||.++|++++..|..+++|+|+ +..|+.|++.+.
T Consensus 76 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l--~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~-aalGfdg~lvmr 150 (307)
T cd01486 76 IVLSIPMPGHPISESEVPSTLKDVKRL--EELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVIN-AALGFDSYLVMR 150 (307)
T ss_pred eeeeccccccccccccccccccCHHHH--HHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEE-EEeccceEEEEE
Confidence 987651 0 11111 467899999999999999999999999999999998 567888876554
No 72
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.92 E-value=7.4e-25 Score=220.29 Aligned_cols=130 Identities=35% Similarity=0.600 Sum_probs=120.4
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 001074 177 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (1163)
Q Consensus 177 ~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~ 256 (1163)
++++|+|+|+||+|+++|++|+++||++|+|+|+|.|+++|++|||+++.+|+|++||++++++|+++||+++++.+...
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCh----hhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEEE
Q 001074 257 LTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFC 308 (1163)
Q Consensus 257 l~~----e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf~ 308 (1163)
+++ ++++++|+||+|.++.+.+..++++|++++ +|||++++.|+.|++..
T Consensus 81 ~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~--~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 81 IDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYG--IPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp CSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT---EEEEEEEETTEEEEEE
T ss_pred cccccccccccCCCEEEEecCCHHHHHHHHHHHHHcC--CCEEEEEeecCEEEEEE
Confidence 854 467799999999999999999999999999 99999999999999864
No 73
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.92 E-value=5.3e-26 Score=258.76 Aligned_cols=149 Identities=17% Similarity=0.188 Sum_probs=139.9
Q ss_pred Cchhhhhhh---cC-HHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcc
Q 001074 556 SRYDAQISV---FG-AKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNI 631 (1163)
Q Consensus 556 ~Rydrq~~l---~G-~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dI 631 (1163)
.||.||+.+ || .++|++|++++|+ |||+||.++.+||. || |+|+|+|.|.||.|||+ +||+++||
T Consensus 53 ~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GV-----g~L~ivD~D~Ve~SNL~--~L~~~~di 121 (318)
T TIGR03603 53 ITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NV-----GALFISDKTYFQETAEI--DLYSKEFI 121 (318)
T ss_pred HHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CC-----CEEEEEcCCEechhhHH--HHhChhhc
Confidence 799999998 55 4589999999999 99999999999999 99 99999999999999999 99999999
Q ss_pred cchHHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHH--HHhhcccccccEEecCCCC
Q 001074 632 GQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLY--VDQRCLYFQKPLLESGTLG 709 (1163)
Q Consensus 632 G~~Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~--v~~~c~~~~~PlI~sgt~G 709 (1163)
|++|+++|++++.++||+++|+.+ .++++++|+||+|+||+.+|.. +|+.|+..++|+|.++..|
T Consensus 122 G~~K~~~a~~~L~~lnp~v~i~~~-------------~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav~g 188 (318)
T TIGR03603 122 LKKDIRDLTSNLDALELTKNVDEL-------------KDLLKDYNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFIDG 188 (318)
T ss_pred CcHHHHHHHHHHHHhCCCCEEeeH-------------HHHhCCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEEcc
Confidence 999999999999999999999763 2467899999999999999966 9999999999999999999
Q ss_pred cccceEEEeCCcccccCCC
Q 001074 710 AKCNTQMVIPHLTENYGAS 728 (1163)
Q Consensus 710 ~~G~v~viip~~t~~y~~~ 728 (1163)
+.|++.+++|+.|+||.|.
T Consensus 189 ~~Gqv~~~~P~~t~C~~Cl 207 (318)
T TIGR03603 189 PFVFITCTLPPETGCFECL 207 (318)
T ss_pred CEEEEEEEeCCCCCcHHHc
Confidence 9999998889889999995
No 74
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.92 E-value=6.1e-25 Score=230.31 Aligned_cols=142 Identities=27% Similarity=0.389 Sum_probs=128.2
Q ss_pred cEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEEEEe
Q 001074 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 656 (1163)
Q Consensus 577 kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~~~~ 656 (1163)
||+|+||||+||+++++|+++|+ |+|+|+|.|.|+.+||+||+++ .+|||++|+++++++++++||+++++++.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv-----g~i~lvD~D~v~~sNl~Rq~~~-~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~ 74 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV-----GNLKLVDFDVVEPSNLNRQQYF-LSQIGEPKVEALKENLREINPFVKIEAIN 74 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcCcchhccccc-HhhCCChHHHHHHHHHHHHCCCCEEEEEE
Confidence 69999999999999999999999 9999999999999999999955 67999999999999999999999999999
Q ss_pred ccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccc-cccEEecCCCCcccceEEEeCCc--ccccCCC
Q 001074 657 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF-QKPLLESGTLGAKCNTQMVIPHL--TENYGAS 728 (1163)
Q Consensus 657 ~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~-~~PlI~sgt~G~~G~v~viip~~--t~~y~~~ 728 (1163)
.++.+++ .+++++++|+||+|+||.++|..+++.|.+. ++|+|.++..|..|++..+.|.. ..||.|.
T Consensus 75 ~~~~~~~----~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01487 75 IKIDENN----LEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIKTKKISDNFYICG 145 (174)
T ss_pred eecChhh----HHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEEecCCCCCeEEee
Confidence 8887533 1568899999999999999999888888887 99999998889999988777654 3588875
No 75
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.92 E-value=1.2e-24 Score=234.83 Aligned_cols=144 Identities=22% Similarity=0.251 Sum_probs=130.6
Q ss_pred hhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHH
Q 001074 159 DLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASV 238 (1163)
Q Consensus 159 ~rYdRQi~l~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~ 238 (1163)
+.+.++...||.++|++|++++|+|+|+||+|+++|++|+++||++|+|+|.|.|+.+||+||+|+ ++|+|++||++++
T Consensus 9 ~~~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a~ 87 (212)
T PRK08644 9 EFEAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEALK 87 (212)
T ss_pred HHHHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHHH
Confidence 445555566999999999999999999999999999999999999999999999999999999876 7899999999999
Q ss_pred HHHHHhcCCCEEEEeecCCCh----hhcCCCcEEEEecCChhHHHHHHHHHHhc-CCCceeEEeeecceeEE
Q 001074 239 QKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNH-QPAISFIKAEVRGLFGS 305 (1163)
Q Consensus 239 ~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVI~~~~~~~~~~~ln~~cr~~-~~~IpfI~~~~~G~~G~ 305 (1163)
++|+++||+++++.+...+++ ++++++|+||.|.++.+.+..+++.|+++ + +|+|.+...|.+|+
T Consensus 88 ~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~--~p~I~~~~~~~~~~ 157 (212)
T PRK08644 88 ENLLEINPFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPG--KKLVAASGMAGYGD 157 (212)
T ss_pred HHHHHHCCCCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCC--CCEEEeehhhccCC
Confidence 999999999999999988865 56789999999999999999999999999 9 99998865555444
No 76
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.92 E-value=1.1e-24 Score=237.31 Aligned_cols=132 Identities=23% Similarity=0.350 Sum_probs=123.8
Q ss_pred cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCC
Q 001074 168 YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNA 247 (1163)
Q Consensus 168 ~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~ 247 (1163)
+|.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+||++++++|+|++||++++++|+++||+
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~ 80 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE 80 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeecCCCh----hhc-CCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecc
Q 001074 248 VVLSTLTSKLTK----EQL-SDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRG 301 (1163)
Q Consensus 248 V~V~~~~~~l~~----e~l-~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G 301 (1163)
++|+.+...+++ +++ .+||+||+|.++...+..|+++|++++ +|||++...|
T Consensus 81 ~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~--ip~I~s~g~g 137 (231)
T cd00755 81 CEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRK--IPVISSMGAG 137 (231)
T ss_pred cEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhC--CCEEEEeCCc
Confidence 999999988764 234 469999999999999999999999999 9999875544
No 77
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.92 E-value=1.8e-24 Score=219.46 Aligned_cols=129 Identities=31% Similarity=0.423 Sum_probs=123.9
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecCCCh
Q 001074 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTK 259 (1163)
Q Consensus 180 ~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~l~~ 259 (1163)
+|+|+|+||+|+++++||+++|+++|+|+|+|.|+++||+||||++++|+|++||++++++|+++||+++++.+...+++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999887764
Q ss_pred ----hhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEc
Q 001074 260 ----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDF 310 (1163)
Q Consensus 260 ----e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf~d~ 310 (1163)
++++++|+||+|.++.+.+..++++|++++ +|||.+++.|+.|+++++.
T Consensus 81 ~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~--i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 81 DNLDDFLDGVDLVIDAIDNIAVRRALNRACKELG--IPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEcCCCcEEEEEEEE
Confidence 578899999999999999999999999999 9999999999999999876
No 78
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.91 E-value=4e-25 Score=242.05 Aligned_cols=169 Identities=22% Similarity=0.275 Sum_probs=155.0
Q ss_pred CCchhHhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccC
Q 001074 153 QTDIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIG 230 (1163)
Q Consensus 153 ~~~~d~~rYdRQi~l--~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiG 230 (1163)
....|-.||+||+.+ +|.+||.+|++++|||||+||+|+..+..|+.+|||++-|+|.|.|+.+||.||.+.+++.+|
T Consensus 39 Ls~dei~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg 118 (427)
T KOG2017|consen 39 LSLDEILRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEARVG 118 (427)
T ss_pred CCHHHHHhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhhhh
Confidence 346677899999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhcCCCEEEEeecCCCh----hhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEE
Q 001074 231 KNRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSV 306 (1163)
Q Consensus 231 k~Kaea~~~~L~eLNp~V~V~~~~~~l~~----e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~v 306 (1163)
+.||++++..++++||.|+|..+.+.++. +.+++||||++|+|+..+|+.+++.|.-.| +|+|++...++.|++
T Consensus 119 ~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLg--kpLVSgSaLr~EGQL 196 (427)
T KOG2017|consen 119 MHKAESAAAFLRRLNSHVEVQTYNEFLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVLLG--KPLVSGSALRWEGQL 196 (427)
T ss_pred hHHHHHHHHHHHhcCCCceeeechhhccchhHHHHhhccceEEEcCCCccchhhhhhHHHHcC--Cccccccccccccee
Confidence 99999999999999999999999998865 468999999999999999999999999999 999999999999988
Q ss_pred EE---EcCCceEEEcCCCCC
Q 001074 307 FC---DFGPEFTVVDVDGED 323 (1163)
Q Consensus 307 f~---d~g~~f~v~d~~ge~ 323 (1163)
-+ +-|+.|.+.-+++.+
T Consensus 197 tvYny~~GPCYRClFP~Ppp 216 (427)
T KOG2017|consen 197 TVYNYNNGPCYRCLFPNPPP 216 (427)
T ss_pred EEeecCCCceeeecCCCCcC
Confidence 43 345566666555443
No 79
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.91 E-value=2.9e-24 Score=229.86 Aligned_cols=157 Identities=32% Similarity=0.472 Sum_probs=130.1
Q ss_pred hhhhhcCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHH
Q 001074 560 AQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVA 639 (1163)
Q Consensus 560 rq~~l~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~va 639 (1163)
.+.+-+|.+.|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.||.+||+||+ |+.+|+|++|++++
T Consensus 6 ~~~~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~-~~~~~iG~~Ka~~~ 79 (200)
T TIGR02354 6 ALVARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGI-----GKLILVDFDVVEPSNLNRQQ-YKASQVGEPKTEAL 79 (200)
T ss_pred HHHHhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCC-----CEEEEECCCEEccccccccc-CChhhCCCHHHHHH
Confidence 4456689999999999999999999999999999999999 99999999999999999997 56689999999999
Q ss_pred HHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccc--cccEEe-cCCCCcccceEE
Q 001074 640 ASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF--QKPLLE-SGTLGAKCNTQM 716 (1163)
Q Consensus 640 a~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~--~~PlI~-sgt~G~~G~v~v 716 (1163)
+++++++||+++++++..++++++ + .++++++|+||+|+||.++|..+...|... ..+++. +|..|+.. ...
T Consensus 80 ~~~l~~inp~~~i~~~~~~i~~~~--~--~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~~g~~g~~~-~~~ 154 (200)
T TIGR02354 80 KENISEINPYTEIEAYDEKITEEN--I--DKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAASGLAGYDD-ANS 154 (200)
T ss_pred HHHHHHHCCCCEEEEeeeeCCHhH--H--HHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEEeccccCCC-Cce
Confidence 999999999999999999887543 2 567899999999999999999877776554 455554 33333332 233
Q ss_pred E-eCCc-ccccCC
Q 001074 717 V-IPHL-TENYGA 727 (1163)
Q Consensus 717 i-ip~~-t~~y~~ 727 (1163)
+ .+.. ..||.|
T Consensus 155 ~~~~~~~~~~~~~ 167 (200)
T TIGR02354 155 IKTRKISKHFYLC 167 (200)
T ss_pred EEecccCCCEEEc
Confidence 3 3232 458888
No 80
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.89 E-value=1.3e-23 Score=224.89 Aligned_cols=114 Identities=21% Similarity=0.408 Sum_probs=105.7
Q ss_pred cCchhhhhhhcCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccch
Q 001074 555 NSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 634 (1163)
Q Consensus 555 ~~Rydrq~~l~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~ 634 (1163)
..||+||+++||.++|+||++++|+|||+||+|||++|||+++|| |+|+|+|.|.|+.|||+|||++++ ++|++
T Consensus 6 ~~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGV-----GsItIvDdD~Ve~SNL~RQfl~~~-dvGk~ 79 (287)
T PTZ00245 6 AVRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGV-----RAVAVADEGLVTDADVCTNYLMQG-EAGGT 79 (287)
T ss_pred HHHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCC-----CeEEEecCCccchhhhcccccccc-ccCCc
Confidence 379999999999999999999999999999999999999999999 999999999999999999999997 78999
Q ss_pred HHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCc
Q 001074 635 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDN 684 (1163)
Q Consensus 635 Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn 684 (1163)
|+++++++++++||+++|+++..++++. .++++||-+.-.
T Consensus 80 KAeaAa~~L~eLNP~V~V~~i~~rld~~----------n~fqvvV~~~~~ 119 (287)
T PTZ00245 80 RGARALGALQRLNPHVSVYDAVTKLDGS----------SGTRVTMAAVIT 119 (287)
T ss_pred HHHHHHHHHHHHCCCcEEEEcccccCCc----------CCceEEEEEccc
Confidence 9999999999999999999999888652 378888877533
No 81
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.89 E-value=4.7e-23 Score=218.79 Aligned_cols=145 Identities=19% Similarity=0.316 Sum_probs=135.6
Q ss_pred chhHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHH
Q 001074 155 DIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRA 234 (1163)
Q Consensus 155 ~~d~~rYdRQi~l~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Ka 234 (1163)
+...+|+.|.-+++|.++++||++++|+|+|+||+|+.++..|+++|||+|+|+|.|.|+.+|+|||.-....+||++|+
T Consensus 7 ~~~~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv 86 (263)
T COG1179 7 DAYRQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKV 86 (263)
T ss_pred HHHHHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHH
Confidence 55678999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred HHHHHHHHHhcCCCEEEEeecCCChhh-----cCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecc
Q 001074 235 LASVQKLQELNNAVVLSTLTSKLTKEQ-----LSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRG 301 (1163)
Q Consensus 235 ea~~~~L~eLNp~V~V~~~~~~l~~e~-----l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G 301 (1163)
++++++++++||+++|+.....+++++ ..+||+||+|.|+......|-.+|++++ ||+|.++..|
T Consensus 87 ~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~k--i~vIss~Gag 156 (263)
T COG1179 87 EVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNK--IPVISSMGAG 156 (263)
T ss_pred HHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcC--CCEEeecccc
Confidence 999999999999999999999988763 3479999999999999999999999999 9999765433
No 82
>PRK07877 hypothetical protein; Provisional
Probab=99.89 E-value=6.8e-23 Score=252.95 Aligned_cols=148 Identities=24% Similarity=0.276 Sum_probs=138.7
Q ss_pred CchhHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCcccCCcccccCCCccCch
Q 001074 154 TDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKN 232 (1163)
Q Consensus 154 ~~~d~~rYdRQi~l~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGV-g~itLvD~d~V~~sDL~rqff~~~~DiGk~ 232 (1163)
.++..+||+||+.+||.++|++|++++|+|+|+| +|+.+|.+|+++|| |+|+|+|.|.|+.+||+|| +++..|+|++
T Consensus 83 ~~~~~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~diG~~ 160 (722)
T PRK07877 83 REFRAVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDLGVN 160 (722)
T ss_pred HHhhHHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhcccH
Confidence 5778899999999999999999999999999996 99999999999996 9999999999999999998 5799999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeecCCChh----hcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEE
Q 001074 233 RALASVQKLQELNNAVVLSTLTSKLTKE----QLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVF 307 (1163)
Q Consensus 233 Kaea~~~~L~eLNp~V~V~~~~~~l~~e----~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf 307 (1163)
||++++++|+++||+++|+++...++++ +++++|+||+|.|+++.+..+|+.|++++ ||+|++...+ |.+.
T Consensus 161 Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~--iP~i~~~~~~--g~~~ 235 (722)
T PRK07877 161 KAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARR--IPVLMATSDR--GLLD 235 (722)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEcCCC--CCcC
Confidence 9999999999999999999999999764 57789999999999999999999999999 9999988555 6664
No 83
>PRK06153 hypothetical protein; Provisional
Probab=99.88 E-value=5.6e-23 Score=234.66 Aligned_cols=129 Identities=19% Similarity=0.195 Sum_probs=118.6
Q ss_pred HHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCccc-CcccCcccc--hHHHHHHHHHH
Q 001074 568 KLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQF-LFRDWNIGQ--AKSTVAASAAT 644 (1163)
Q Consensus 568 ~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQf-Lf~~~dIG~--~Ka~vaa~~l~ 644 (1163)
..|++|++++|+||||||+||.++..||++|| |+|+|+|.|.||.||||||+ +|+.+|||+ +|++++++++.
T Consensus 169 ~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GV-----geI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~ 243 (393)
T PRK06153 169 ALSAKLEGQRIAIIGLGGTGSYILDLVAKTPV-----REIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYS 243 (393)
T ss_pred HHHHHHhhCcEEEEcCCccHHHHHHHHHHcCC-----CEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHH
Confidence 56999999999999999999999999999999 99999999999999999998 678999999 99999999999
Q ss_pred hhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCC
Q 001074 645 SINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTL 708 (1163)
Q Consensus 645 ~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~ 708 (1163)
++|| .|+++...+.+++. ..+.++|+||+|+|+.++|..+++.|..+++|+|++|..
T Consensus 244 ~in~--~I~~~~~~I~~~n~-----~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~ 300 (393)
T PRK06153 244 NMRR--GIVPHPEYIDEDNV-----DELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMG 300 (393)
T ss_pred HhCC--eEEEEeecCCHHHH-----HHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeec
Confidence 9998 56788888865432 356899999999999999999999999999999998863
No 84
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.86 E-value=1.9e-21 Score=216.24 Aligned_cols=129 Identities=21% Similarity=0.278 Sum_probs=119.8
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCc--cCchHHHHHHHHHHHhcCCCEEEEeecCC
Q 001074 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDND--IGKNRALASVQKLQELNNAVVLSTLTSKL 257 (1163)
Q Consensus 180 ~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~D--iGk~Kaea~~~~L~eLNp~V~V~~~~~~l 257 (1163)
+|+|+|+||||+++|++|+++|||+|+|+|+|.|+.+||+||++++.+| +|++||++++++|+++||+|+++.+...+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 6999999999999999999999999999999999999999999999999 99999999999999999999999886543
Q ss_pred -----------------C----hhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEcC
Q 001074 258 -----------------T----KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFG 311 (1163)
Q Consensus 258 -----------------~----~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf~d~g 311 (1163)
+ +++++++|+|++|.|+.+.|..++.+|+.++ +|+|. ...|+.|++..-.|
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~--k~~I~-aalGfdg~lvmrhg 152 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKN--KLVIN-AALGFDSYLVMRHG 152 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhC--CcEEE-EEeccceEEEEEeC
Confidence 1 2467899999999999999999999999999 89997 58899999988665
No 85
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.85 E-value=3.9e-21 Score=205.80 Aligned_cols=139 Identities=21% Similarity=0.257 Sum_probs=119.7
Q ss_pred hhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHh
Q 001074 165 LAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQEL 244 (1163)
Q Consensus 165 i~l~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eL 244 (1163)
...+|.++|++|++++|+|+|+||+|+++|++|+++||++++|+|.|.|+++||+||+| ..+|+|++|+++++++|+++
T Consensus 8 ~~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~-~~~~iG~~Ka~~~~~~l~~i 86 (200)
T TIGR02354 8 VARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQY-KASQVGEPKTEALKENISEI 86 (200)
T ss_pred HHhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccC-ChhhCCCHHHHHHHHHHHHH
Confidence 34479999999999999999999999999999999999999999999999999999975 66899999999999999999
Q ss_pred cCCCEEEEeecCCChh----hcCCCcEEEEecCChhHHHHHH-HHHHhcCCCceeEEeeecceeEEEE
Q 001074 245 NNAVVLSTLTSKLTKE----QLSDFQAVVFTDISLDKAIEFD-DFCHNHQPAISFIKAEVRGLFGSVF 307 (1163)
Q Consensus 245 Np~V~V~~~~~~l~~e----~l~~fdvVI~~~~~~~~~~~ln-~~cr~~~~~IpfI~~~~~G~~G~vf 307 (1163)
||+++++.+...++++ ++.++|+||.|.++.+.+..++ ++|+.++ .+++.+ ..|+.|+.+
T Consensus 87 np~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~--~~~ii~-~~g~~g~~~ 151 (200)
T TIGR02354 87 NPYTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYK--DKYLIA-ASGLAGYDD 151 (200)
T ss_pred CCCCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcC--CCcEEE-EeccccCCC
Confidence 9999999998888754 5778999999999989887755 4555555 344333 367777664
No 86
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.85 E-value=3.5e-21 Score=202.04 Aligned_cols=127 Identities=23% Similarity=0.240 Sum_probs=116.3
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecCCCh
Q 001074 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTK 259 (1163)
Q Consensus 180 ~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~l~~ 259 (1163)
+|+|+|+||+|++++++|+++||++++|+|.|.|+.+||+||+|. .+|+|++||++++++|+++||+++++.+...+++
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~-~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYF-LSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccccc-HhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 699999999999999999999999999999999999999999965 6799999999999999999999999999888765
Q ss_pred ----hhcCCCcEEEEecCChhHHHHHHHHHHhc-CCCceeEEeeecceeEEEEEE
Q 001074 260 ----EQLSDFQAVVFTDISLDKAIEFDDFCHNH-QPAISFIKAEVRGLFGSVFCD 309 (1163)
Q Consensus 260 ----e~l~~fdvVI~~~~~~~~~~~ln~~cr~~-~~~IpfI~~~~~G~~G~vf~d 309 (1163)
++++++|+||.|.++.+.+..+++.|.++ + +|||++...|++|++...
T Consensus 80 ~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~--ip~i~~~~~~~~~~~~~~ 132 (174)
T cd01487 80 NNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKN--KPVVCASGMAGFGDSNNI 132 (174)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCC--CCEEEEehhhccCCeEEE
Confidence 57889999999999999998888777776 8 999999988888887643
No 87
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.85 E-value=2.1e-21 Score=206.96 Aligned_cols=165 Identities=28% Similarity=0.473 Sum_probs=147.2
Q ss_pred Cchhhhhhh--cCH-HHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCccc
Q 001074 556 SRYDAQISV--FGA-KLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 632 (1163)
Q Consensus 556 ~Rydrq~~l--~G~-~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG 632 (1163)
.-|+|.+++ .|. ...+||+...|.|||.||+|+-.+..|-++|+ |++.+.|.|.||+.|+||-| |+.+..|
T Consensus 60 NPYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGI-----GkLlLfDYDkVElANMNRLF-f~P~QaG 133 (422)
T KOG2336|consen 60 NPYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGI-----GKLLLFDYDKVELANMNRLF-FQPDQAG 133 (422)
T ss_pred ChHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCc-----ceEEEeecchhhhhcccccc-cCccccc
Confidence 359999887 453 56899999999999999999999999999999 99999999999999999986 7899999
Q ss_pred chHHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhh-----------ccCCEEEEccCchHHHHHHHhhccccccc
Q 001074 633 QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFW-----------ENITCVINALDNVNARLYVDQRCLYFQKP 701 (1163)
Q Consensus 633 ~~Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~-----------~~~DvVi~alDn~~aR~~v~~~c~~~~~P 701 (1163)
.+|+++|++.|..+||++.|+.|+.+++.- ++ | +.|. +..|+|+.|+||++||+.+|..|-..+.-
T Consensus 134 lsKv~AA~~TL~~iNPDV~iE~hn~NITTv-en-F-d~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q~ 210 (422)
T KOG2336|consen 134 LSKVDAAVQTLAEINPDVVIEVHNYNITTV-EN-F-DTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQT 210 (422)
T ss_pred chHHHHHHHHHHhcCCCeEEEEeecceeee-hh-H-HHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhhH
Confidence 999999999999999999999999988741 22 2 2232 34899999999999999999999999999
Q ss_pred EEecCCC--CcccceEEEeCCcccccCCCC
Q 001074 702 LLESGTL--GAKCNTQMVIPHLTENYGASR 729 (1163)
Q Consensus 702 lI~sgt~--G~~G~v~viip~~t~~y~~~~ 729 (1163)
+.+||.. .-.||+|.++|+.|.||.|.+
T Consensus 211 WmESGVSEnAVSGHIQ~i~PGetACFACaP 240 (422)
T KOG2336|consen 211 WMESGVSENAVSGHIQLIVPGETACFACAP 240 (422)
T ss_pred HHHccCccccccceeEEecCCccceecccC
Confidence 9999986 458999999999999999954
No 88
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.85 E-value=5.1e-21 Score=229.34 Aligned_cols=142 Identities=20% Similarity=0.225 Sum_probs=130.0
Q ss_pred cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcc---CchHHHHHHHHHHHh
Q 001074 168 YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDI---GKNRALASVQKLQEL 244 (1163)
Q Consensus 168 ~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~Di---Gk~Kaea~~~~L~eL 244 (1163)
+..-+.++|++++|||+|+||||+++|++|+++|||+|||+|.|.|+.+||+||++++.+|+ |++||++++++|+++
T Consensus 328 lP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~I 407 (664)
T TIGR01381 328 HPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRI 407 (664)
T ss_pred CChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHH
Confidence 33445699999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCCEEEEeecCC-------Ch--------------hhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeeccee
Q 001074 245 NNAVVLSTLTSKL-------TK--------------EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLF 303 (1163)
Q Consensus 245 Np~V~V~~~~~~l-------~~--------------e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~ 303 (1163)
||.|+++.+...+ ++ +.++++|+|++|.|+.+.|..++.+|..++ +|+|.+ ..|+.
T Consensus 408 nP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~--kplI~a-AlGfd 484 (664)
T TIGR01381 408 FPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHK--KIAISA-ALGFD 484 (664)
T ss_pred CCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhC--CCEEEE-Eeccc
Confidence 9999999887653 32 367889999999999999999999999999 999998 58999
Q ss_pred EEEEEEcCC
Q 001074 304 GSVFCDFGP 312 (1163)
Q Consensus 304 G~vf~d~g~ 312 (1163)
|++..-.|-
T Consensus 485 g~lvmrhG~ 493 (664)
T TIGR01381 485 SYVVMRHGI 493 (664)
T ss_pred eEEEEEecc
Confidence 999987663
No 89
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.85 E-value=5.2e-21 Score=218.02 Aligned_cols=144 Identities=18% Similarity=0.194 Sum_probs=133.0
Q ss_pred CchhHhhhhhhhhc---cC-HHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcc
Q 001074 154 TDIDEDLHSRQLAV---YG-RETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDI 229 (1163)
Q Consensus 154 ~~~d~~rYdRQi~l---~G-~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~Di 229 (1163)
+..+-+||+||+.+ || .++|++|++++|+ +||+|+.+|.+|+. |||+|+|+|+|.|+.+||+ ++++++||
T Consensus 48 ~~~~~~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~di 121 (318)
T TIGR03603 48 TKFNLITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSKEFI 121 (318)
T ss_pred CHHHHHHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhChhhc
Confidence 34556899999999 56 5589999999999 99999999999999 9999999999999999999 89999999
Q ss_pred CchHHHHHHHHHHHhcCCCEEEEeecCCChhhcCCCcEEEEecCChhHHHH--HHHHHHhcCCCceeEEeeecceeEEEE
Q 001074 230 GKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIE--FDDFCHNHQPAISFIKAEVRGLFGSVF 307 (1163)
Q Consensus 230 Gk~Kaea~~~~L~eLNp~V~V~~~~~~l~~e~l~~fdvVI~~~~~~~~~~~--ln~~cr~~~~~IpfI~~~~~G~~G~vf 307 (1163)
|++||++++++|.++||.+.++.. .+.++++|+||+|.|++..+.. +|++|.+++ +|||++...|+.|++.
T Consensus 122 G~~K~~~a~~~L~~lnp~v~i~~~-----~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~--~PlV~gav~g~~Gqv~ 194 (318)
T TIGR03603 122 LKKDIRDLTSNLDALELTKNVDEL-----KDLLKDYNYIIICTEHSNISLLRGLNKLSKETK--KPNTIAFIDGPFVFIT 194 (318)
T ss_pred CcHHHHHHHHHHHHhCCCCEEeeH-----HHHhCCCCEEEECCCCccHhHHHHHHHHHHHHC--CCEEEEEEccCEEEEE
Confidence 999999999999999999999874 3578899999999999998865 999999999 9999999999999988
Q ss_pred EEc
Q 001074 308 CDF 310 (1163)
Q Consensus 308 ~d~ 310 (1163)
.-+
T Consensus 195 ~~~ 197 (318)
T TIGR03603 195 CTL 197 (318)
T ss_pred EEe
Confidence 755
No 90
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=4.8e-21 Score=207.86 Aligned_cols=153 Identities=23% Similarity=0.469 Sum_probs=143.2
Q ss_pred CchhhhhhhcCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchH
Q 001074 556 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 635 (1163)
Q Consensus 556 ~Rydrq~~l~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~K 635 (1163)
.-|||||++||.+.|++|+++||+|+|.+|+|.|++||+.++|| |++++.|.-.|....++-|||.+.+++|+.|
T Consensus 12 alYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV-----~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~r 86 (331)
T KOG2014|consen 12 ALYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGV-----GSLTLLDDRLVTEEDVGAQFLISASSVGQTR 86 (331)
T ss_pred HHHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhccc-----ceeEEeeccccchhcCCceeEEchhhhchHH
Confidence 56999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCcccceE
Q 001074 636 STVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQ 715 (1163)
Q Consensus 636 a~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G~v~ 715 (1163)
+++..++++.+||.++|......+.+- +.+||.+||+||-.--..+.+-.+|..|+..+++++.++..|+.|++-
T Consensus 87 aeas~erl~~LNPmV~v~~d~edl~ek-----~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a~d~~g~~Gy~F 161 (331)
T KOG2014|consen 87 AEASLERLQDLNPMVDVSVDKEDLSEK-----DEEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFYAGDCFGLCGYAF 161 (331)
T ss_pred HHHHHHHHHhcCCceEEEechhhhhhc-----chhhhhceeEEEEeccchhhhhhHHHHHHhcCceEEeccccceeeeee
Confidence 999999999999999999988777653 468999999988776688999999999999999999999999999877
Q ss_pred EEe
Q 001074 716 MVI 718 (1163)
Q Consensus 716 vii 718 (1163)
+-+
T Consensus 162 ~dL 164 (331)
T KOG2014|consen 162 ADL 164 (331)
T ss_pred eeh
Confidence 654
No 91
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2e-21 Score=218.73 Aligned_cols=188 Identities=22% Similarity=0.341 Sum_probs=161.4
Q ss_pred ccCchhhhhhhcCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccc
Q 001074 554 INSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 633 (1163)
Q Consensus 554 ~~~Rydrq~~l~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~ 633 (1163)
...|||||+++||..+|..|..++||++|||++|||++|||++.|| |.++|+|.-.|+.+++..+|+...+++|+
T Consensus 6 ~~~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gi-----gs~tvvd~~~v~~~d~g~nF~~~~~~~Gk 80 (523)
T KOG2016|consen 6 PKTKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGI-----GSFTVVDGSKVEQGDLGNNFFLDAKSIGK 80 (523)
T ss_pred hhhHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhccccc-----ccEEEEecceeeecchhhHHHHHHHhhch
Confidence 3579999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCcccc
Q 001074 634 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 713 (1163)
Q Consensus 634 ~Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G~ 713 (1163)
+||++..+.+++.||+++-......- ++-..-+..|+++|++|+.+==+.+.-..+.+.|+.+++||+.+-+.|+.|.
T Consensus 81 srA~a~~e~LqeLN~~V~~~~vee~p--~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl~G~ 158 (523)
T KOG2016|consen 81 SRAEATLEFLQELNPSVSGSFVEESP--DFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGLAGT 158 (523)
T ss_pred hHHHHHHHHHHHhChhhhcCccccCh--hhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecceEE
Confidence 99999999999999998766554432 2222235789999999998877778888999999999999999999999999
Q ss_pred eEEEeCCcccccCCCCCCCCCCCCCccccCCCCChhhH
Q 001074 714 TQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHC 751 (1163)
Q Consensus 714 v~viip~~t~~y~~~~dp~~~~~p~Ct~~~fP~~~~Hc 751 (1163)
+++.+.. +.-....|......++.-.+||+.++|.
T Consensus 159 iRI~ikE---H~iieshPD~~~~DLRL~nPwpeLi~~v 193 (523)
T KOG2016|consen 159 IRISIKE---HTIIESHPDNPLDDLRLDNPWPELIEYV 193 (523)
T ss_pred EEEEeee---ccccccCCCCcccccccCCCcHHHHHHH
Confidence 9998864 3333445555556677777788777764
No 92
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=99.82 E-value=8.5e-21 Score=167.68 Aligned_cols=66 Identities=47% Similarity=0.795 Sum_probs=55.7
Q ss_pred eeeccCCCCchhHHHHHHhhhhhhccCCCCccHHHHHHHhCcccchhhhhHHHHHHHHHHHHHHHhcC
Q 001074 962 QFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDG 1029 (1163)
Q Consensus 962 ~FeKDDd~n~hidFi~aasNlRa~ny~I~~~~~~~~k~iAG~IIPAIaTTtA~vaGl~~lEl~K~l~~ 1029 (1163)
+|||||+. |++||+|+|||||++|+||+.|++++++|+|+||||++||||+|||++|+|++|++++
T Consensus 1 ~Fd~dd~~--h~~fI~a~anLrA~~f~I~~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~~ 66 (67)
T PF02134_consen 1 EFDKDDPL--HLDFIYAAANLRAQNFGIPPLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQN 66 (67)
T ss_dssp ---TTSHH--HHHHHHHHHHHHHHHTT---S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCcHH--HHHHHHHHHHHHHHHhCCCcccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHhc
Confidence 59999986 9999999999999999999999999999999999999999999999999999999986
No 93
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.8e-20 Score=201.34 Aligned_cols=156 Identities=22% Similarity=0.316 Sum_probs=139.9
Q ss_pred hhhhhhhcCHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHH
Q 001074 558 YDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKST 637 (1163)
Q Consensus 558 ydrq~~l~G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~ 637 (1163)
..|.+.+||.++++||+++=|+||||||+|++++..|+++|+ ++|.|||.|.|.+|.||||....-.|||.||+.
T Consensus 57 LarN~aFfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~-----qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~ 131 (430)
T KOG2018|consen 57 LARNYAFFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGV-----QKIRIVDFDQVSLSSLNRHSCATLADVGTPKVM 131 (430)
T ss_pred HHhHHhhhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcC-----ceEEEechhhccHhhhhhhhhhhHhhcCCchHH
Confidence 456677899999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCcccc-eEE
Q 001074 638 VAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN-TQM 716 (1163)
Q Consensus 638 vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G~-v~v 716 (1163)
++++.++++.|.++|++...-.+.++++ +-...+.|.|+||+||++++.-+-.+|..+++++|.|-..+.+.. +.+
T Consensus 132 clkkh~skiaPw~eIdar~~l~~~~s~e---dll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~GaaaksDPTrv 208 (430)
T KOG2018|consen 132 CLKKHFSKIAPWCEIDARNMLWTSSSEE---DLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAAAKSDPTRV 208 (430)
T ss_pred HHHHHHHhhCccceecHHHhhcCCCchh---hhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCccccCCCcee
Confidence 9999999999999999999888877753 334577999999999999999999999999999997766666554 455
Q ss_pred EeCCc
Q 001074 717 VIPHL 721 (1163)
Q Consensus 717 iip~~ 721 (1163)
-+.++
T Consensus 209 ~v~Di 213 (430)
T KOG2018|consen 209 NVADI 213 (430)
T ss_pred ehhhc
Confidence 45443
No 94
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=8.3e-20 Score=217.46 Aligned_cols=152 Identities=20% Similarity=0.329 Sum_probs=143.8
Q ss_pred HhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCC-----eEEEEeCCccCcccCCcccccCCCccCch
Q 001074 158 EDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVK-----SVTLHDEGTVELWDLSSNFVFSDNDIGKN 232 (1163)
Q Consensus 158 ~~rYdRQi~l~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg-----~itLvD~d~V~~sDL~rqff~~~~DiGk~ 232 (1163)
.+|||-||+++|..-|+||.+.++++||+|++|||.+||++++||| .|++.|.|.++.|||+|||+++..|||++
T Consensus 410 gsRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~ 489 (1013)
T KOG2012|consen 410 GSRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDVGKP 489 (1013)
T ss_pred cCccccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceeeccccccCch
Confidence 3599999999999999999999999999999999999999999996 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeecCC--------ChhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeE
Q 001074 233 RALASVQKLQELNNAVVLSTLTSKL--------TKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFG 304 (1163)
Q Consensus 233 Kaea~~~~L~eLNp~V~V~~~~~~l--------~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G 304 (1163)
|+++++.....+||+++|.++...+ +++||.+.|+|..+.|+.+.|..++.-|.-+. .|++.+++.|..|
T Consensus 490 KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~--kPLLESGTlGTKG 567 (1013)
T KOG2012|consen 490 KSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYR--KPLLESGTLGTKG 567 (1013)
T ss_pred HHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhc--cchhhccCcCCcc
Confidence 9999999999999999999987664 45789999999999999999999999999999 9999999999999
Q ss_pred EEEEEcC
Q 001074 305 SVFCDFG 311 (1163)
Q Consensus 305 ~vf~d~g 311 (1163)
...+..+
T Consensus 568 ntQVvvP 574 (1013)
T KOG2012|consen 568 NTQVVVP 574 (1013)
T ss_pred ceeEEec
Confidence 8877665
No 95
>PRK06153 hypothetical protein; Provisional
Probab=99.78 E-value=7.4e-19 Score=201.08 Aligned_cols=126 Identities=13% Similarity=0.147 Sum_probs=115.5
Q ss_pred HHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCccc-ccCCCccCc--hHHHHHHHHHHHhcC
Q 001074 170 RETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNF-VFSDNDIGK--NRALASVQKLQELNN 246 (1163)
Q Consensus 170 ~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqf-f~~~~DiGk--~Kaea~~~~L~eLNp 246 (1163)
.+.|++|++++|+||||||+|+.++..|+++||++|+|+|.|.|+++||+||+ +++++|+|+ +||+++++++.++|+
T Consensus 168 ~~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~ 247 (393)
T PRK06153 168 GALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR 247 (393)
T ss_pred HHHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC
Confidence 35699999999999999999999999999999999999999999999999998 568999999 999999999999998
Q ss_pred CCEEEEeecCCChh---hcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeee
Q 001074 247 AVVLSTLTSKLTKE---QLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEV 299 (1163)
Q Consensus 247 ~V~V~~~~~~l~~e---~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~ 299 (1163)
. |..+...++++ .+.++|+||+|.|+.+.+..|+++|++++ ||||.+++
T Consensus 248 ~--I~~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~g--IP~Id~G~ 299 (393)
T PRK06153 248 G--IVPHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEALG--IPFIDVGM 299 (393)
T ss_pred e--EEEEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEeee
Confidence 4 56666667654 57899999999999999999999999999 99998765
No 96
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.74 E-value=1e-17 Score=183.53 Aligned_cols=128 Identities=16% Similarity=0.190 Sum_probs=114.7
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCC-----C-----eEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcC
Q 001074 177 FASNILVSGMQGLGAEIAKNLILAGV-----K-----SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNN 246 (1163)
Q Consensus 177 ~~s~VlIiG~gglGsEiaKNLvlaGV-----g-----~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp 246 (1163)
+.++|+|||+||+|++++++|+++|+ | +|+|+|+|.|+.+||+||+ +.++|||++||+++++++...|
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQl-f~~~dVG~~Ka~v~~~ri~~~~- 87 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQA-FYPADVGQNKAIVLVNRLNQAM- 87 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhccc-CChhHCCcHHHHHHHHHHHhcc-
Confidence 68899999999999999999999973 4 9999999999999999995 5678999999999999999888
Q ss_pred CCEEEEeecCCCh-hhcCCCcEEEEecCChhHHHHHHHHHHh---cCCCceeEEeeecceeEEEEE
Q 001074 247 AVVLSTLTSKLTK-EQLSDFQAVVFTDISLDKAIEFDDFCHN---HQPAISFIKAEVRGLFGSVFC 308 (1163)
Q Consensus 247 ~V~V~~~~~~l~~-e~l~~fdvVI~~~~~~~~~~~ln~~cr~---~~~~IpfI~~~~~G~~G~vf~ 308 (1163)
.++++++...+++ +++.++|+||.|.|+.+.|..|++.|++ .+ .|++.+++.+.-|++.+
T Consensus 88 ~~~i~a~~~~~~~~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~--~~~ld~Gn~~~~gqv~~ 151 (244)
T TIGR03736 88 GTDWTAHPERVERSSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGY--AYWLDLGNRADDGQVIL 151 (244)
T ss_pred CceEEEEEeeeCchhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccc--cceecccCCCCCCcEEE
Confidence 7899998887764 3567899999999999999999999988 23 79999999999888765
No 97
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=6.8e-18 Score=183.05 Aligned_cols=140 Identities=21% Similarity=0.326 Sum_probs=127.7
Q ss_pred hHhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHH
Q 001074 157 DEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALA 236 (1163)
Q Consensus 157 d~~rYdRQi~l~G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea 236 (1163)
-.+...|.+..+|+++|+||+++-|.|||+||+|+.++-.|+++||++|.|+|.|.|+.+.|+||...+..|||.||+.+
T Consensus 53 ireqLarN~aFfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~c 132 (430)
T KOG2018|consen 53 IREQLARNYAFFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMC 132 (430)
T ss_pred HHHHHHhHHhhhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHH
Confidence 34455688888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEeecCCCh----h-hcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEee
Q 001074 237 SVQKLQELNNAVVLSTLTSKLTK----E-QLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAE 298 (1163)
Q Consensus 237 ~~~~L~eLNp~V~V~~~~~~l~~----e-~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~ 298 (1163)
++++++++.|+++|.+...-++. + .+.+-|.||+|.|+.++...|-++|++++ +++|++.
T Consensus 133 lkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~--l~Viss~ 197 (430)
T KOG2018|consen 133 LKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHG--LKVISST 197 (430)
T ss_pred HHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcC--CceEecc
Confidence 99999999999999998765543 2 24467999999999999999999999999 9999753
No 98
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.52 E-value=3.5e-14 Score=152.16 Aligned_cols=154 Identities=22% Similarity=0.358 Sum_probs=129.9
Q ss_pred CchhHhhhhhhhhc--cC-HHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccC
Q 001074 154 TDIDEDLHSRQLAV--YG-RETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIG 230 (1163)
Q Consensus 154 ~~~d~~rYdRQi~l--~G-~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiG 230 (1163)
+-.|.+-|||-+.+ +| ...-+|++...|.|+|.||+|+-+|..|.++|||++.|+|-|.|+..|++|-| |.++..|
T Consensus 55 EVVDSNPYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLF-f~P~QaG 133 (422)
T KOG2336|consen 55 EVVDSNPYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPDQAG 133 (422)
T ss_pred hHhcCChHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccc-cCccccc
Confidence 34566779998877 55 45578999999999999999999999999999999999999999999999985 5778899
Q ss_pred chHHHHHHHHHHHhcCCCEEEEeecCCCh-hhc---------------CCCcEEEEecCChhHHHHHHHHHHhcCCCcee
Q 001074 231 KNRALASVQKLQELNNAVVLSTLTSKLTK-EQL---------------SDFQAVVFTDISLDKAIEFDDFCHNHQPAISF 294 (1163)
Q Consensus 231 k~Kaea~~~~L~eLNp~V~V~~~~~~l~~-e~l---------------~~fdvVI~~~~~~~~~~~ln~~cr~~~~~Ipf 294 (1163)
.+|++|+.+.|.++||+|.++++.-.++. +.| +..|+|+.|.++++.|..+|..|.+.+ .-|
T Consensus 134 lsKv~AA~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~--q~W 211 (422)
T KOG2336|consen 134 LSKVDAAVQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELN--QTW 211 (422)
T ss_pred chHHHHHHHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhh--hHH
Confidence 99999999999999999999999877642 111 136999999999999999999999998 667
Q ss_pred EEeeec--ceeEEEEEEc
Q 001074 295 IKAEVR--GLFGSVFCDF 310 (1163)
Q Consensus 295 I~~~~~--G~~G~vf~d~ 310 (1163)
.-+++. ...|.|....
T Consensus 212 mESGVSEnAVSGHIQ~i~ 229 (422)
T KOG2336|consen 212 MESGVSENAVSGHIQLIV 229 (422)
T ss_pred HHccCccccccceeEEec
Confidence 766653 3566665544
No 99
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=99.52 E-value=2.5e-15 Score=121.87 Aligned_cols=45 Identities=49% Similarity=1.046 Sum_probs=40.2
Q ss_pred CcccccCCCCCCCCCCCCCccccCCCCChhhHHHHHHHHhhhhcc
Q 001074 720 HLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLE 764 (1163)
Q Consensus 720 ~~t~~y~~~~dp~~~~~p~Ct~~~fP~~~~Hci~wAr~~F~~lF~ 764 (1163)
++|+||+|+.+|+++++|+||+|+||+.++|||+|||++|+++|+
T Consensus 1 ~~Tecy~c~~~~~~~~~P~CTir~~P~~~~HcI~wAk~~f~~~F~ 45 (45)
T PF10585_consen 1 HVTECYECSPDPPEKSYPVCTIRNFPRTPEHCIEWAKDLFEELFG 45 (45)
T ss_dssp TTS--TTCSGGGSSSSEEHHHHHTS-SSHHHHHHHHHHHHHHHHT
T ss_pred CccccccCCCCCCCCCCCcchhhcCCCCchHHHHHHHHHHHHHhC
Confidence 579999999999999999999999999999999999999999995
No 100
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.39 E-value=2.9e-13 Score=155.47 Aligned_cols=135 Identities=20% Similarity=0.278 Sum_probs=115.6
Q ss_pred HHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCccc---chHHHHHHHHHHhh
Q 001074 570 QKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG---QAKSTVAASAATSI 646 (1163)
Q Consensus 570 q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG---~~Ka~vaa~~l~~~ 646 (1163)
.+++.+.|+++.|||.+||.++++|...|| ++||.+|+.+|..||--||.||+-+|-+ ++||++|++++++|
T Consensus 335 Ld~is~~KcLLLGAGTLGC~VAR~Ll~WGv-----RhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~I 409 (669)
T KOG2337|consen 335 LDIISQTKCLLLGAGTLGCNVARNLLGWGV-----RHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEI 409 (669)
T ss_pred hhhhhcceeEEecCcccchHHHHHHHhhcc-----ceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHh
Confidence 578999999999999999999999999999 9999999999999999999999988864 99999999999999
Q ss_pred CCCCeEEEEeccCC-------ccc-ccc---c--chhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCc
Q 001074 647 NPRLNIEALQNRVG-------PET-ENV---F--DDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGA 710 (1163)
Q Consensus 647 np~~~I~~~~~~v~-------~~~-e~~---~--~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~ 710 (1163)
+|.++-+.+...+. +.. +.. + =+++++..|+|+-.+|..++|+.-.-.|...+|-+|++. +|+
T Consensus 410 fP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~KivINaA-LGF 485 (669)
T KOG2337|consen 410 FPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVINAA-LGF 485 (669)
T ss_pred CccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhcceEeeee-ccc
Confidence 99998777765443 110 000 0 035678999999999999999999999999999999754 354
No 101
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.39 E-value=7.2e-13 Score=158.35 Aligned_cols=146 Identities=20% Similarity=0.242 Sum_probs=123.5
Q ss_pred Cchhhhhhhc------CHHHHHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccC
Q 001074 556 SRYDAQISVF------GAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDW 629 (1163)
Q Consensus 556 ~Rydrq~~l~------G~~~q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~ 629 (1163)
+||..||..| |....++-+++||+|+|.||+|..++.+|+.+|+ ++|+.+|.|.+ .|||||
T Consensus 104 ERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~-----~~I~~vd~D~v-~SNlnR------- 170 (637)
T TIGR03693 104 DRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGF-----PRFHAIVTDAE-EHALDR------- 170 (637)
T ss_pred HHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCC-----CcEEEEecccc-chhhhH-------
Confidence 8999999885 4566677799999999999999999999999999 99999999999 999999
Q ss_pred cccchHHHHHHHHHHhhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCch--HHHHHHHhhccccc---ccEEe
Q 001074 630 NIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNV--NARLYVDQRCLYFQ---KPLLE 704 (1163)
Q Consensus 630 dIG~~Ka~vaa~~l~~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~--~aR~~v~~~c~~~~---~PlI~ 704 (1163)
||+. ++.|++ +||+++|+.+..... +.+ .+.++++|+|+...|++ .--+++|..|+..+ +|++-
T Consensus 171 -IgEl-~e~A~~----~n~~v~v~~i~~~~~---~dl--~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~ 239 (637)
T TIGR03693 171 -IHEL-AEIAEE----TDDALLVQEIDFAED---QHL--HEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAIC 239 (637)
T ss_pred -HHHH-HHHHHH----hCCCCceEeccCCcc---hhH--HHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEE
Confidence 7877 666555 999999999875222 222 35578999999999955 44568999999999 77778
Q ss_pred cCCCCcccceEEEeCCcccccCC
Q 001074 705 SGTLGAKCNTQMVIPHLTENYGA 727 (1163)
Q Consensus 705 sgt~G~~G~v~viip~~t~~y~~ 727 (1163)
+|+.+..|-+.. |+.|.||.|
T Consensus 240 ~G~~~liGPlft--PgkTGCWeC 260 (637)
T TIGR03693 240 LKQVGLAGPVFQ--QHGDECFEA 260 (637)
T ss_pred cccceeecceEC--CCCCcHHHH
Confidence 888888887655 999999999
No 102
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.11 E-value=2.2e-10 Score=132.18 Aligned_cols=138 Identities=17% Similarity=0.256 Sum_probs=118.4
Q ss_pred HHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCcc---CchHHHHHHHHHHHhcCCC
Q 001074 172 TMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDI---GKNRALASVQKLQELNNAV 248 (1163)
Q Consensus 172 ~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~Di---Gk~Kaea~~~~L~eLNp~V 248 (1163)
...++.+.++|+.|+|.+||.||.||+--||++||.+|...|+.+|--||.+++-+|. |++||++++++|++++|.+
T Consensus 334 nLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~m 413 (669)
T KOG2337|consen 334 NLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPSM 413 (669)
T ss_pred chhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhCccc
Confidence 4578999999999999999999999999999999999999999999999999999887 4999999999999999988
Q ss_pred EEEEeecCC-------C--------------hhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEE
Q 001074 249 VLSTLTSKL-------T--------------KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVF 307 (1163)
Q Consensus 249 ~V~~~~~~l-------~--------------~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf 307 (1163)
+-+.+...+ . ++.++..|+|++.+|+.+.|..-.-+|-.++ +.+.-...|+..|+.
T Consensus 414 ~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~---KivINaALGFDsylV 490 (669)
T KOG2337|consen 414 EATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKN---KIVINAALGFDSYLV 490 (669)
T ss_pred cccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhc---ceEeeeecccceeEE
Confidence 776654332 1 1346788999999999999887777777777 445557789999888
Q ss_pred EEcCC
Q 001074 308 CDFGP 312 (1163)
Q Consensus 308 ~d~g~ 312 (1163)
.-.|.
T Consensus 491 MRHG~ 495 (669)
T KOG2337|consen 491 MRHGT 495 (669)
T ss_pred EecCC
Confidence 77764
No 103
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.02 E-value=1.6e-09 Score=130.05 Aligned_cols=141 Identities=18% Similarity=0.201 Sum_probs=111.8
Q ss_pred CchhHhhhhhhhhcc------CHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCC
Q 001074 154 TDIDEDLHSRQLAVY------GRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDN 227 (1163)
Q Consensus 154 ~~~d~~rYdRQi~l~------G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~ 227 (1163)
.....+||..||..+ |.+..++.++++|+|+|+||+|+.++.+|+.+|++.|..+|.|.+ .+|++|
T Consensus 99 ~~a~lERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR------- 170 (637)
T TIGR03693 99 ESALLDRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR------- 170 (637)
T ss_pred CHHHHHHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH-------
Confidence 345568999999984 667777889999999999999999999999999999999999999 999998
Q ss_pred ccCchHHHHHHHHHHHhcCCCEEEEeecCCCh---hhcCCCcEEEEecC--ChhHHHHHHHHHHhcCC-CceeEEeeecc
Q 001074 228 DIGKNRALASVQKLQELNNAVVLSTLTSKLTK---EQLSDFQAVVFTDI--SLDKAIEFDDFCHNHQP-AISFIKAEVRG 301 (1163)
Q Consensus 228 DiGk~Kaea~~~~L~eLNp~V~V~~~~~~l~~---e~l~~fdvVI~~~~--~~~~~~~ln~~cr~~~~-~IpfI~~~~~G 301 (1163)
||+. ++.+++ .||.|.++.++...++ +.++++|+||+..+ .......+|+.|.+.|. -+|++.++..+
T Consensus 171 -IgEl-~e~A~~----~n~~v~v~~i~~~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~~~ 244 (637)
T TIGR03693 171 -IHEL-AEIAEE----TDDALLVQEIDFAEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQVG 244 (637)
T ss_pred -HHHH-HHHHHH----hCCCCceEeccCCcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEcccce
Confidence 6765 554444 8999999988764333 46889999998877 45678899999999882 24444555555
Q ss_pred eeEEEEE
Q 001074 302 LFGSVFC 308 (1163)
Q Consensus 302 ~~G~vf~ 308 (1163)
+.|-+|.
T Consensus 245 liGPlft 251 (637)
T TIGR03693 245 LAGPVFQ 251 (637)
T ss_pred eecceEC
Confidence 5555443
No 104
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=98.11 E-value=1.1e-06 Score=78.10 Aligned_cols=50 Identities=38% Similarity=0.751 Sum_probs=37.0
Q ss_pred ccCCCCCcchhHHHHHHHHHHHHcCCCCCCCCCChHHHHHHhhhcCCCCcCCCCC
Q 001074 861 QFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKD 915 (1163)
Q Consensus 861 ~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 915 (1163)
+||++|+.|++||+++|+|||++|||+ + .+...+++++ +.++|.|.|+.+
T Consensus 1 ~Fd~dd~~h~~fI~a~anLrA~~f~I~-~---~~~~~~~~i~-~~iIP~~~~t~~ 50 (67)
T PF02134_consen 1 EFDKDDPLHLDFIYAAANLRAQNFGIP-P---LDREEIKKIA-GNIIPAFAPTNA 50 (67)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHHTT-------S-HHHHHHHH-TTEE-B-HHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhCCC-c---ccHHHHHHHh-cCcCCCcCCchh
Confidence 599999999999999999999999999 4 4677888888 888999988764
No 105
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=97.83 E-value=7.3e-05 Score=75.88 Aligned_cols=121 Identities=18% Similarity=0.266 Sum_probs=97.0
Q ss_pred cCeEEEEcCChHHHHHHHHHH---HhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEee
Q 001074 178 ASNILVSGMQGLGAEIAKNLI---LAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (1163)
Q Consensus 178 ~s~VlIiG~gglGsEiaKNLv---laGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~ 254 (1163)
.-.|.++|||-+|.-+|-+|. +-|+.+|.++|...|++.|+-- ..--.-+|.+|++-+ ++|..-.+.-.|++..
T Consensus 18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiih--rr~Ga~~GEyKv~Fi-~rl~~~~f~r~V~a~p 94 (217)
T COG4015 18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIH--RRLGAKVGEYKVDFI-KRLGRVHFGRRVEAFP 94 (217)
T ss_pred CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHH--HHhCCCcchhHHHHH-HHhCcCCCCceeeccc
Confidence 346999999999999999998 6799999999999999999852 222346899999864 4666777888999999
Q ss_pred cCCChhhcC--CCcEEEEec---CChhHHHHHHHHHHhcCCCceeEEeeecceeEE
Q 001074 255 SKLTKEQLS--DFQAVVFTD---ISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGS 305 (1163)
Q Consensus 255 ~~l~~e~l~--~fdvVI~~~---~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~ 305 (1163)
+.++.++++ .=||||.|. +..+.-..|.++|++.+ +.-| ++.|.||+
T Consensus 95 E~it~dNlhll~gDVvvi~IAGGdT~PvTaaii~ya~~rG--~~Ti--sT~GVFGi 146 (217)
T COG4015 95 ENITKDNLHLLKGDVVVICIAGGDTIPVTAAIINYAKERG--IKTI--STNGVFGI 146 (217)
T ss_pred ccccccchhhhcCCEEEEEecCCCcchhHHHHHHHHHHcC--ceEe--ecCceeec
Confidence 999887654 338888775 46777788999999999 7554 67888885
No 106
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.49 E-value=0.0015 Score=70.71 Aligned_cols=98 Identities=10% Similarity=0.048 Sum_probs=72.9
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEee
Q 001074 175 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (1163)
Q Consensus 175 kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~ 254 (1163)
.|++.+|+|||.|.+|...++.|..+| .+|++++++.. +.+.++.+.-.+....
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~~-------------------------~~l~~l~~~~~i~~~~ 60 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPELT-------------------------ENLVKLVEEGKIRWKQ 60 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCCC-------------------------HHHHHHHhCCCEEEEe
Confidence 478899999999999999999999999 68999975311 1222333333455566
Q ss_pred cCCChhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecc
Q 001074 255 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRG 301 (1163)
Q Consensus 255 ~~l~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G 301 (1163)
..+.+..+.++|+||.|+++.+....+.+.|+ .+ +++-.++.--
T Consensus 61 ~~~~~~~l~~adlViaaT~d~elN~~i~~~a~-~~--~lvn~~d~~~ 104 (202)
T PRK06718 61 KEFEPSDIVDAFLVIAATNDPRVNEQVKEDLP-EN--ALFNVITDAE 104 (202)
T ss_pred cCCChhhcCCceEEEEcCCCHHHHHHHHHHHH-hC--CcEEECCCCc
Confidence 66777788999999999999888889999994 46 5555444333
No 107
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.39 E-value=0.0027 Score=69.01 Aligned_cols=104 Identities=15% Similarity=0.113 Sum_probs=80.8
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 001074 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (1163)
Q Consensus 176 L~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~ 255 (1163)
|++.+|+|||.|.+|..-++.|...|. .||+++++.- +.+.++-..-.+.....
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~-------------------------~~l~~l~~~~~i~~~~~ 60 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE-------------------------SELTLLAEQGGITWLAR 60 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC-------------------------HHHHHHHHcCCEEEEeC
Confidence 678999999999999999999999996 8999987431 11222222235777777
Q ss_pred CCChhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEE
Q 001074 256 KLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVF 307 (1163)
Q Consensus 256 ~l~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf 307 (1163)
...++.+.++++||.++++.+....+...|++.+ +++-.++--....++|
T Consensus 61 ~~~~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~--ilvn~~d~~e~~~f~~ 110 (205)
T TIGR01470 61 CFDADILEGAFLVIAATDDEELNRRVAHAARARG--VPVNVVDDPELCSFIF 110 (205)
T ss_pred CCCHHHhCCcEEEEECCCCHHHHHHHHHHHHHcC--CEEEECCCcccCeEEE
Confidence 7777889999999999988888889999999999 8876666555544444
No 108
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=97.32 E-value=0.0002 Score=66.55 Aligned_cols=62 Identities=26% Similarity=0.338 Sum_probs=48.8
Q ss_pred EEcCCCCcHHHHHHHHHHc---CCceeeeecCCceeecCCCc----chhhcccCcHHHHHHH-----hhccCCC
Q 001074 1072 WILKDNPTLRELIQWLKDK---GLNAYSISCGSCLLFNSMFP----RHKERMDKKVVDLARE-----VAKVELP 1133 (1163)
Q Consensus 1072 ~~v~~~~TL~eli~~~~~k---~l~~~~I~~g~~llY~~~~~----~~~~~l~~~l~~l~~~-----~~~~~~~ 1133 (1163)
++++.+.||++||+.+.++ .+..++|+.+++-||....| .++.||+|+|.||+.+ |++..+|
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL~~~g~ei~VtD~~lp 74 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKELLSDGEEITVTDPTLP 74 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTTHHSSEEEEEEETTES
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHHhcCCCEEEEECCCCc
Confidence 3567789999999999998 88899999999999998876 4578999999999755 4555554
No 109
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.08 E-value=0.0014 Score=66.27 Aligned_cols=78 Identities=23% Similarity=0.292 Sum_probs=57.8
Q ss_pred HHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEe
Q 001074 174 RRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 253 (1163)
Q Consensus 174 ~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~ 253 (1163)
..+++++|+|+|+||.|..+++.|...|+++|+|+..+ ..||+.+++.+ +...+...
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt-------------------~~ra~~l~~~~----~~~~~~~~ 64 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT-------------------PERAEALAEEF----GGVNIEAI 64 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS-------------------HHHHHHHHHHH----TGCSEEEE
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC-------------------HHHHHHHHHHc----Ccccccee
Confidence 36899999999999999999999999999999998742 23777666666 44444444
Q ss_pred ecCCChhhcCCCcEEEEecCC
Q 001074 254 TSKLTKEQLSDFQAVVFTDIS 274 (1163)
Q Consensus 254 ~~~l~~e~l~~fdvVI~~~~~ 274 (1163)
.-.=-.+.+.++|+||.|+..
T Consensus 65 ~~~~~~~~~~~~DivI~aT~~ 85 (135)
T PF01488_consen 65 PLEDLEEALQEADIVINATPS 85 (135)
T ss_dssp EGGGHCHHHHTESEEEE-SST
T ss_pred eHHHHHHHHhhCCeEEEecCC
Confidence 321112467799999998864
No 110
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.05 E-value=0.0013 Score=77.26 Aligned_cols=99 Identities=20% Similarity=0.306 Sum_probs=70.4
Q ss_pred CcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEEEE
Q 001074 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 655 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~~~ 655 (1163)
.+|+|+|||++|+.++.+||+.|. ++|+|.|... .|+ +++...... +++++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d-----~~V~iAdRs~-------------------~~~----~~i~~~~~~-~v~~~ 52 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD-----GEVTIADRSK-------------------EKC----ARIAELIGG-KVEAL 52 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC-----ceEEEEeCCH-------------------HHH----HHHHhhccc-cceeE
Confidence 589999999999999999999998 8999997321 122 222222111 56666
Q ss_pred eccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCC
Q 001074 656 QNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGT 707 (1163)
Q Consensus 656 ~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt 707 (1163)
.-.+.... .+ .+.++++|+||+|+.-.-.+ -+-+.|.+.++++++...
T Consensus 53 ~vD~~d~~-al--~~li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts~ 100 (389)
T COG1748 53 QVDAADVD-AL--VALIKDFDLVINAAPPFVDL-TILKACIKTGVDYVDTSY 100 (389)
T ss_pred EecccChH-HH--HHHHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEccc
Confidence 65554321 11 36678899999999877776 556699999999998543
No 111
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.02 E-value=0.012 Score=61.42 Aligned_cols=86 Identities=14% Similarity=0.185 Sum_probs=67.7
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEee
Q 001074 175 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (1163)
Q Consensus 175 kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~ 254 (1163)
.|++.+|+|+|.|.+|...++.|...|. .+++++++.. +.+.++. .+....
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~-------------------------~~l~~l~---~i~~~~ 60 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEIC-------------------------KEMKELP---YITWKQ 60 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccC-------------------------HHHHhcc---CcEEEe
Confidence 5789999999999999999999999997 8999875432 1122221 234556
Q ss_pred cCCChhhcCCCcEEEEecCChhHHHHHHHHHHhcC
Q 001074 255 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQ 289 (1163)
Q Consensus 255 ~~l~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~ 289 (1163)
..+.++.+.++|+||.++++.+....+...|++++
T Consensus 61 ~~~~~~dl~~a~lViaaT~d~e~N~~i~~~a~~~~ 95 (157)
T PRK06719 61 KTFSNDDIKDAHLIYAATNQHAVNMMVKQAAHDFQ 95 (157)
T ss_pred cccChhcCCCceEEEECCCCHHHHHHHHHHHHHCC
Confidence 67778889999999999999888888999998754
No 112
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.98 E-value=0.0017 Score=74.00 Aligned_cols=77 Identities=21% Similarity=0.265 Sum_probs=59.4
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCe
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~ 651 (1163)
.++.++|+|+|+||.|..++..|+..|+ ++|+|+|.+. .|++.+++.+...++.+.
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~-----~~I~I~nR~~-------------------~ka~~la~~l~~~~~~~~ 179 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGV-----ERLTIFDVDP-------------------ARAAALADELNARFPAAR 179 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCC-----CEEEEECCCH-------------------HHHHHHHHHHHhhCCCeE
Confidence 3567899999999999999999999999 8999998662 588889988887777654
Q ss_pred EEEEeccCCcccccccchhhhccCCEEEEcc
Q 001074 652 IEALQNRVGPETENVFDDTFWENITCVINAL 682 (1163)
Q Consensus 652 I~~~~~~v~~~~e~~~~~~f~~~~DvVi~al 682 (1163)
+..... + .+...++|+||||+
T Consensus 180 ~~~~~~-~---------~~~~~~aDiVInaT 200 (284)
T PRK12549 180 ATAGSD-L---------AAALAAADGLVHAT 200 (284)
T ss_pred EEeccc-h---------HhhhCCCCEEEECC
Confidence 432210 0 12346799999996
No 113
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.94 E-value=0.002 Score=62.10 Aligned_cols=90 Identities=18% Similarity=0.131 Sum_probs=65.8
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEee
Q 001074 175 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (1163)
Q Consensus 175 kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~ 254 (1163)
.|++.+|+|||.|.+|..=++.|..+| .++|++.++. .. +. ..++ ...
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~~-------------------------~~---~~i~--~~~ 51 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-EF-------------------------SE---GLIQ--LIR 51 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-HH-------------------------HH---TSCE--EEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-hh-------------------------hh---hHHH--HHh
Confidence 478999999999999999999999999 5999998765 00 00 2222 334
Q ss_pred cCCChhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeee
Q 001074 255 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEV 299 (1163)
Q Consensus 255 ~~l~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~ 299 (1163)
..+. +.+.++++|+.++++.+....+.+.|++++ +|+-.++.
T Consensus 52 ~~~~-~~l~~~~lV~~at~d~~~n~~i~~~a~~~~--i~vn~~D~ 93 (103)
T PF13241_consen 52 REFE-EDLDGADLVFAATDDPELNEAIYADARARG--ILVNVVDD 93 (103)
T ss_dssp SS-G-GGCTTESEEEE-SS-HHHHHHHHHHHHHTT--SEEEETT-
T ss_pred hhHH-HHHhhheEEEecCCCHHHHHHHHHHHhhCC--EEEEECCC
Confidence 4454 668899999999999998999999999999 77665543
No 114
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.91 E-value=0.0031 Score=71.91 Aligned_cols=76 Identities=24% Similarity=0.286 Sum_probs=59.8
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 001074 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (1163)
Q Consensus 176 L~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~ 255 (1163)
++.++|+|+|+||+|..++..|+..|+++|+|+|.+ ..|++.+++.+.+..+.+.+....
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~~~~~- 184 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD-------------------PARAAALADELNARFPAARATAGS- 184 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEEEecc-
Confidence 456899999999999999999999999999999864 258999999998877765553322
Q ss_pred CCChhhcCCCcEEEEec
Q 001074 256 KLTKEQLSDFQAVVFTD 272 (1163)
Q Consensus 256 ~l~~e~l~~fdvVI~~~ 272 (1163)
.+ .+.+.++|+||.|+
T Consensus 185 ~~-~~~~~~aDiVInaT 200 (284)
T PRK12549 185 DL-AAALAAADGLVHAT 200 (284)
T ss_pred ch-HhhhCCCCEEEECC
Confidence 11 23456788888876
No 115
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.90 E-value=0.002 Score=65.22 Aligned_cols=78 Identities=23% Similarity=0.386 Sum_probs=56.4
Q ss_pred HHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCC
Q 001074 571 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 650 (1163)
Q Consensus 571 ~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~ 650 (1163)
..|++++++|+|+||.|..+++.|+..|+ .+|+|+. |. ..|++.+++.+ +..
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~-----~~i~i~n----------Rt---------~~ra~~l~~~~----~~~ 59 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGA-----KEITIVN----------RT---------PERAEALAEEF----GGV 59 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTS-----SEEEEEE----------SS---------HHHHHHHHHHH----TGC
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCC-----CEEEEEE----------CC---------HHHHHHHHHHc----Ccc
Confidence 47899999999999999999999999999 8899975 32 24666666666 333
Q ss_pred eEEEEeccCCcccccccchhhhccCCEEEEccCc
Q 001074 651 NIEALQNRVGPETENVFDDTFWENITCVINALDN 684 (1163)
Q Consensus 651 ~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn 684 (1163)
.+...... .+ .+.+.++|+||+|+.-
T Consensus 60 ~~~~~~~~------~~--~~~~~~~DivI~aT~~ 85 (135)
T PF01488_consen 60 NIEAIPLE------DL--EEALQEADIVINATPS 85 (135)
T ss_dssp SEEEEEGG------GH--CHHHHTESEEEE-SST
T ss_pred ccceeeHH------HH--HHHHhhCCeEEEecCC
Confidence 44444311 11 2456899999999864
No 116
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.89 E-value=0.016 Score=63.59 Aligned_cols=100 Identities=13% Similarity=0.100 Sum_probs=78.1
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEee
Q 001074 175 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (1163)
Q Consensus 175 kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~ 254 (1163)
++++.+|+|||.|.+|..=++.|..+|. +||++-++.. +.|.++-..-.++...
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~-------------------------~el~~l~~~~~i~~~~ 75 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFS-------------------------KEFLDLKKYGNLKLIK 75 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCC-------------------------HHHHHHHhCCCEEEEe
Confidence 4568899999999999999999999995 7999876532 1122222233477777
Q ss_pred cCCChhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecce
Q 001074 255 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGL 302 (1163)
Q Consensus 255 ~~l~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~ 302 (1163)
....++.+.++++||+|+++.+.-..+.+.|++.+ +++..++.-..
T Consensus 76 r~~~~~dl~g~~LViaATdD~~vN~~I~~~a~~~~--~lvn~vd~p~~ 121 (223)
T PRK05562 76 GNYDKEFIKDKHLIVIATDDEKLNNKIRKHCDRLY--KLYIDCSDYKK 121 (223)
T ss_pred CCCChHHhCCCcEEEECCCCHHHHHHHHHHHHHcC--CeEEEcCCccc
Confidence 78888889999999999999999999999999999 77776655444
No 117
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.84 E-value=0.0041 Score=67.39 Aligned_cols=100 Identities=15% Similarity=0.122 Sum_probs=67.8
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCe
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~ 651 (1163)
.|++++|+|||+|.+|...++.|...|. +|+|++.+. .+ .+.+.+ +.-.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga------~V~VIs~~~------~~---------------~l~~l~----~~~~ 55 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGA------HIVVISPEL------TE---------------NLVKLV----EEGK 55 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC------eEEEEcCCC------CH---------------HHHHHH----hCCC
Confidence 4789999999999999999999999996 899986531 10 011111 1112
Q ss_pred EEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCccc
Q 001074 652 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKC 712 (1163)
Q Consensus 652 I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~G 712 (1163)
+...... |....+.++|+||.|+|+.+.-..+...| ..+++ ++.......|
T Consensus 56 i~~~~~~--------~~~~~l~~adlViaaT~d~elN~~i~~~a-~~~~l-vn~~d~~~~~ 106 (202)
T PRK06718 56 IRWKQKE--------FEPSDIVDAFLVIAATNDPRVNEQVKEDL-PENAL-FNVITDAESG 106 (202)
T ss_pred EEEEecC--------CChhhcCCceEEEEcCCCHHHHHHHHHHH-HhCCc-EEECCCCccC
Confidence 3333222 33455688999999999999999999999 45664 4444333333
No 118
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.76 E-value=0.0058 Score=72.04 Aligned_cols=98 Identities=19% Similarity=0.290 Sum_probs=70.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecCCC
Q 001074 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLT 258 (1163)
Q Consensus 179 s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~l~ 258 (1163)
.+|+|+|+|++|+-+|.+|+..|.+.|+|.|... ..+.++.+.... ++++..-+..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~-----------------------~~~~~i~~~~~~-~v~~~~vD~~ 57 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK-----------------------EKCARIAELIGG-KVEALQVDAA 57 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH-----------------------HHHHHHHhhccc-cceeEEeccc
Confidence 5899999999999999999999999999998422 223344333322 4444443332
Q ss_pred -----hhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeeccee
Q 001074 259 -----KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLF 303 (1163)
Q Consensus 259 -----~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~ 303 (1163)
.+.++++|+||.+....-.. .+-+.|-+.+ +.++.+....-.
T Consensus 58 d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i~~g--v~yvDts~~~~~ 104 (389)
T COG1748 58 DVDALVALIKDFDLVINAAPPFVDL-TILKACIKTG--VDYVDTSYYEEP 104 (389)
T ss_pred ChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHHHhC--CCEEEcccCCch
Confidence 35788999999988654444 7888999999 988876655544
No 119
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=96.70 E-value=0.0049 Score=63.01 Aligned_cols=126 Identities=13% Similarity=0.206 Sum_probs=94.7
Q ss_pred cCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEEE
Q 001074 575 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 654 (1163)
Q Consensus 575 ~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~~ 654 (1163)
...|.++|||-+|--++-+|... ..|.-.+|.++|...||..++-.--+ -.-+|.+|++.++. +-+-.+.-+|++
T Consensus 18 rGeV~l~G~GRLG~Rval~Lle~--HRGGperi~v~Dgqrve~dDiihrr~--Ga~~GEyKv~Fi~r-l~~~~f~r~V~a 92 (217)
T COG4015 18 RGEVSLIGCGRLGVRVALDLLEV--HRGGPERIYVFDGQRVEEDDIIHRRL--GAKVGEYKVDFIKR-LGRVHFGRRVEA 92 (217)
T ss_pred CceEEEEeccchhHHHHHHHHHH--hcCCCeEEEEecCcccCchhhHHHHh--CCCcchhHHHHHHH-hCcCCCCceeec
Confidence 34699999999999999888753 22323899999999999999742222 34789999998765 444456678999
Q ss_pred EeccCCcccccccchhhhccCCEEEEcc---CchHHHHHHHhhcccccccEEecCCCCcccc
Q 001074 655 LQNRVGPETENVFDDTFWENITCVINAL---DNVNARLYVDQRCLYFQKPLLESGTLGAKCN 713 (1163)
Q Consensus 655 ~~~~v~~~~e~~~~~~f~~~~DvVi~al---Dn~~aR~~v~~~c~~~~~PlI~sgt~G~~G~ 713 (1163)
..+.++.++.+++ .+ |+|+-|+ |..+.-..+...|.+.+...|. |.|-.|.
T Consensus 93 ~pE~it~dNlhll-----~g-DVvvi~IAGGdT~PvTaaii~ya~~rG~~Tis--T~GVFGi 146 (217)
T COG4015 93 FPENITKDNLHLL-----KG-DVVVICIAGGDTIPVTAAIINYAKERGIKTIS--TNGVFGI 146 (217)
T ss_pred ccccccccchhhh-----cC-CEEEEEecCCCcchhHHHHHHHHHHcCceEee--cCceeec
Confidence 9999998876654 23 8777765 6778888899999999998884 4454443
No 120
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=96.50 E-value=0.0019 Score=69.48 Aligned_cols=61 Identities=20% Similarity=0.242 Sum_probs=52.9
Q ss_pred CHHHHHHHhcCcEEEEecCcchHH-HHHHHHHcccccC-CCccEEEe---cCCcccccCcCcccCc
Q 001074 566 GAKLQKKLEDAKVFIVGSGALGCE-FLKNVALMGVSCG-NQGKLTIT---DDDVIEKSNLSRQFLF 626 (1163)
Q Consensus 566 G~~~q~kL~~~kVlvVGaGglGce-~lknLa~~Gv~~~-~~g~i~iv---D~D~Ie~SNLnRQfLf 626 (1163)
+...+++|++++|.|+|.|+.|++ ++.+|+.+|++.. ....++|+ |++..+++|+|||++-
T Consensus 96 ~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~~~a~l~vVl~~Dyl~p~L~~~n~~~l~ 161 (193)
T TIGR03882 96 PAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAPSEADLTVVLTDDYLDPELAAINQRALA 161 (193)
T ss_pred HHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccCCCCCEEEEEeCCCCChHHHHHHHHHHH
Confidence 345789999999999999999999 9999999999554 44556899 9999999999999763
No 121
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.43 E-value=0.016 Score=60.46 Aligned_cols=85 Identities=18% Similarity=0.287 Sum_probs=62.6
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCe
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~ 651 (1163)
.|++++|+|||.|.+|...++.|...|. +++||+.+..+. +.++ + .
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga------~V~VIsp~~~~~-------------------------l~~l-~--~ 55 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA------FVTVVSPEICKE-------------------------MKEL-P--Y 55 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEcCccCHH-------------------------HHhc-c--C
Confidence 5789999999999999999999999997 999997653210 1111 1 1
Q ss_pred EEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccc
Q 001074 652 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF 698 (1163)
Q Consensus 652 I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~ 698 (1163)
++.... .|.+..+.++|+||.|+|+.+.-..+...|...
T Consensus 56 i~~~~~--------~~~~~dl~~a~lViaaT~d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 56 ITWKQK--------TFSNDDIKDAHLIYAATNQHAVNMMVKQAAHDF 94 (157)
T ss_pred cEEEec--------ccChhcCCCceEEEECCCCHHHHHHHHHHHHHC
Confidence 222222 233455688999999999999999888888764
No 122
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.38 E-value=0.005 Score=59.42 Aligned_cols=88 Identities=15% Similarity=0.174 Sum_probs=63.4
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCe
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~ 651 (1163)
.|++++|+|||.|.+|..=++.|..+|. +++|+..+. +... ..++
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA------~v~vis~~~-~~~~----------------------------~~i~ 48 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGA------KVTVISPEI-EFSE----------------------------GLIQ 48 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTB------EEEEEESSE-HHHH----------------------------TSCE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEECCch-hhhh----------------------------hHHH
Confidence 4789999999999999999999999996 999998775 1000 1122
Q ss_pred EEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEec
Q 001074 652 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLES 705 (1163)
Q Consensus 652 I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~s 705 (1163)
.....+ . +.+.++++|+.|+|+.+.-..+-..|...++|+-.+
T Consensus 49 --~~~~~~--------~-~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 49 --LIRREF--------E-EDLDGADLVFAATDDPELNEAIYADARARGILVNVV 91 (103)
T ss_dssp --EEESS---------G-GGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEET
T ss_pred --HHhhhH--------H-HHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEEC
Confidence 222222 1 336789999999999999999999999999987643
No 123
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.37 E-value=0.012 Score=63.83 Aligned_cols=96 Identities=18% Similarity=0.179 Sum_probs=71.2
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCe
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~ 651 (1163)
.|++++|+|||.|.+|..-++.|...|. +++|++++.- +. +.+ +.+ .-+
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga------~VtVvsp~~~------------------~~---l~~-l~~---~~~ 54 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKAGA------QLRVIAEELE------------------SE---LTL-LAE---QGG 54 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHCCC------EEEEEcCCCC------------------HH---HHH-HHH---cCC
Confidence 3778999999999999999999999996 9999987521 00 111 111 114
Q ss_pred EEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecC
Q 001074 652 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESG 706 (1163)
Q Consensus 652 I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sg 706 (1163)
|+.+...+. ...+.++++||.|+|+.+....+-..|...++|+-.++
T Consensus 55 i~~~~~~~~--------~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d 101 (205)
T TIGR01470 55 ITWLARCFD--------ADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVVD 101 (205)
T ss_pred EEEEeCCCC--------HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 555554433 34568899999999999888999999999999885443
No 124
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.99 E-value=0.013 Score=69.56 Aligned_cols=97 Identities=19% Similarity=0.248 Sum_probs=65.1
Q ss_pred EEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEEEEec
Q 001074 578 VFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQN 657 (1163)
Q Consensus 578 VlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~~~~~ 657 (1163)
|+|+|+|.+|..+++.|++.+-. .+++|.|.+.- |++.+++.+ ...++....-
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~----~~v~va~r~~~-------------------~~~~~~~~~----~~~~~~~~~~ 53 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPF----EEVTVADRNPE-------------------KAERLAEKL----LGDRVEAVQV 53 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-----EEEEEESSHH-------------------HHHHHHT------TTTTEEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcCCCC----CcEEEEECCHH-------------------HHHHHHhhc----cccceeEEEE
Confidence 78999999999999999998741 38898875432 333333332 3346666666
Q ss_pred cCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEec
Q 001074 658 RVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLES 705 (1163)
Q Consensus 658 ~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~s 705 (1163)
.+....+ + .+++++.|+||||+... ....+-+.|.+.++++|+.
T Consensus 54 d~~~~~~-l--~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 54 DVNDPES-L--AELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp -TTTHHH-H--HHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEES
T ss_pred ecCCHHH-H--HHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeecc
Confidence 6653222 2 56789999999999877 5567888999999999993
No 125
>PRK10637 cysG siroheme synthase; Provisional
Probab=95.90 E-value=0.089 Score=64.09 Aligned_cols=105 Identities=11% Similarity=0.104 Sum_probs=81.4
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEee
Q 001074 175 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (1163)
Q Consensus 175 kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~ 254 (1163)
.|++.+|+|||.|.++..=++.|..+|. +||++=++.. +.+.++-..-.++...
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~~-------------------------~~~~~l~~~~~i~~~~ 62 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAFI-------------------------PQFTAWADAGMLTLVE 62 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCCC-------------------------HHHHHHHhCCCEEEEe
Confidence 5789999999999999999999999997 7888854321 1233333344677777
Q ss_pred cCCChhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEE
Q 001074 255 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVF 307 (1163)
Q Consensus 255 ~~l~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf 307 (1163)
....++.+.++++||.|+++.+...++.+.|++.+ +++-.++.-....++|
T Consensus 63 ~~~~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~--~lvN~~d~~~~~~f~~ 113 (457)
T PRK10637 63 GPFDESLLDTCWLAIAATDDDAVNQRVSEAAEARR--IFCNVVDAPKAASFIM 113 (457)
T ss_pred CCCChHHhCCCEEEEECCCCHHHhHHHHHHHHHcC--cEEEECCCcccCeEEE
Confidence 88888889999999999999999999999999999 7766665544444433
No 126
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.80 E-value=0.025 Score=62.11 Aligned_cols=97 Identities=14% Similarity=0.157 Sum_probs=71.7
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCe
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~ 651 (1163)
++++.+|+|||.|.++..=++.|...|. +|+||-++.- + ....++ ..+ +
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA------~VtVVap~i~------------~------el~~l~-----~~~--~ 70 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGC------YVYILSKKFS------------K------EFLDLK-----KYG--N 70 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEcCCCC------------H------HHHHHH-----hCC--C
Confidence 5678899999999999999999999996 9999976621 0 000111 122 3
Q ss_pred EEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCC
Q 001074 652 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGT 707 (1163)
Q Consensus 652 I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt 707 (1163)
|+.+...+. ...+.++++||.|+|+.+.-..+...|...++++..+..
T Consensus 71 i~~~~r~~~--------~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 71 LKLIKGNYD--------KEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred EEEEeCCCC--------hHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCC
Confidence 555544433 455689999999999999999999999999988775543
No 127
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.78 E-value=0.058 Score=58.86 Aligned_cols=104 Identities=17% Similarity=0.142 Sum_probs=78.3
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEee
Q 001074 175 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (1163)
Q Consensus 175 kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~ 254 (1163)
+|.+++|+|||.|.+|.-=++.|+.+|. +++++-++. . +.+..+-....+....
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga-~v~Vvs~~~--~-----------------------~el~~~~~~~~i~~~~ 62 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGA-DVTVVSPEF--E-----------------------PELKALIEEGKIKWIE 62 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEcCCc--c-----------------------HHHHHHHHhcCcchhh
Confidence 4678999999999999999999999997 777776543 1 1222222222355666
Q ss_pred cCCChhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEE
Q 001074 255 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSV 306 (1163)
Q Consensus 255 ~~l~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~v 306 (1163)
+.+..+.+..+++||.++++.+...++.+.|++++ +|+-.++--.+.-++
T Consensus 63 ~~~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~--i~vNv~D~p~~~~f~ 112 (210)
T COG1648 63 REFDAEDLDDAFLVIAATDDEELNERIAKAARERR--ILVNVVDDPELCDFI 112 (210)
T ss_pred cccChhhhcCceEEEEeCCCHHHHHHHHHHHHHhC--CceeccCCcccCcee
Confidence 67777778889999999999999999999999999 777666665553333
No 128
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.47 E-value=0.037 Score=63.18 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=52.4
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 001074 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (1163)
Q Consensus 176 L~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~ 255 (1163)
+++++|+|+|+||.|..|+-.|+..|+++|+|++.+. .||+++++++.+..+...+.....
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~-------------------~ka~~La~~~~~~~~~~~~~~~~~ 185 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT-------------------SRAQALADVINNAVGREAVVGVDA 185 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH-------------------HHHHHHHHHHhhccCcceEEecCH
Confidence 4468999999999999999999999999999997532 378888777754444322222110
Q ss_pred CCChhhcCCCcEEEEec
Q 001074 256 KLTKEQLSDFQAVVFTD 272 (1163)
Q Consensus 256 ~l~~e~l~~fdvVI~~~ 272 (1163)
.-..+.+..+|+||.|+
T Consensus 186 ~~~~~~~~~~divINaT 202 (283)
T PRK14027 186 RGIEDVIAAADGVVNAT 202 (283)
T ss_pred hHHHHHHhhcCEEEEcC
Confidence 00012334567777655
No 129
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.19 E-value=0.041 Score=62.82 Aligned_cols=78 Identities=21% Similarity=0.272 Sum_probs=53.9
Q ss_pred HhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeE
Q 001074 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 652 (1163)
Q Consensus 573 L~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I 652 (1163)
+++++|+|+||||.|..++-.|+..|+ .+|+|+|.+. .|++.+++.+....+...+
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~-----~~i~i~nR~~-------------------~ka~~La~~~~~~~~~~~~ 180 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGV-----QKLQVADLDT-------------------SRAQALADVINNAVGREAV 180 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCC-----CEEEEEcCCH-------------------HHHHHHHHHHhhccCcceE
Confidence 557899999999999999999999999 8999986442 3777787776544433222
Q ss_pred EEEeccCCcccccccchhhhccCCEEEEcc
Q 001074 653 EALQNRVGPETENVFDDTFWENITCVINAL 682 (1163)
Q Consensus 653 ~~~~~~v~~~~e~~~~~~f~~~~DvVi~al 682 (1163)
.... . .. + ......+|+||||+
T Consensus 181 ~~~~--~----~~-~-~~~~~~~divINaT 202 (283)
T PRK14027 181 VGVD--A----RG-I-EDVIAAADGVVNAT 202 (283)
T ss_pred EecC--H----hH-H-HHHHhhcCEEEEcC
Confidence 2111 0 00 0 12235789999997
No 130
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.10 E-value=0.052 Score=62.11 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=54.8
Q ss_pred HhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeE
Q 001074 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 652 (1163)
Q Consensus 573 L~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I 652 (1163)
+++++++|+|+||+|..++..|+..|+ .+|+|++.+.- ...|++.+++.+....+.+.+
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~-----~~V~I~~R~~~----------------~~~~a~~l~~~l~~~~~~~~~ 182 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGA-----KEITIFNIKDD----------------FYERAEQTAEKIKQEVPECIV 182 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEeCCch----------------HHHHHHHHHHHHhhcCCCcee
Confidence 567899999999999999999999999 77999864210 013566666666655555444
Q ss_pred EEEeccCCcccccccchhhhccCCEEEEcc
Q 001074 653 EALQNRVGPETENVFDDTFWENITCVINAL 682 (1163)
Q Consensus 653 ~~~~~~v~~~~e~~~~~~f~~~~DvVi~al 682 (1163)
... .+.. .+.+ .+.+..+|+||||+
T Consensus 183 ~~~--d~~~-~~~~--~~~~~~~DilINaT 207 (289)
T PRK12548 183 NVY--DLND-TEKL--KAEIASSDILVNAT 207 (289)
T ss_pred EEe--chhh-hhHH--HhhhccCCEEEEeC
Confidence 322 1221 1111 12345679999986
No 131
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.85 E-value=0.095 Score=53.58 Aligned_cols=76 Identities=20% Similarity=0.222 Sum_probs=55.0
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhCCC-eEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 001074 179 SNILVSGM-QGLGAEIAKNLILAGVK-SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (1163)
Q Consensus 179 s~VlIiG~-gglGsEiaKNLvlaGVg-~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~ 256 (1163)
.||.|+|+ |.+|+.+|-.|+..|+. +|.|+|.+ ..+++..+.-|+...+..........
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~-------------------~~~~~g~a~Dl~~~~~~~~~~~~i~~ 61 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN-------------------EDKAEGEALDLSHASAPLPSPVRITS 61 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS-------------------HHHHHHHHHHHHHHHHGSTEEEEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccC-------------------cccceeeehhhhhhhhhccccccccc
Confidence 37999999 99999999999999985 49999952 23666666666655444433322222
Q ss_pred CChhhcCCCcEEEEecC
Q 001074 257 LTKEQLSDFQAVVFTDI 273 (1163)
Q Consensus 257 l~~e~l~~fdvVI~~~~ 273 (1163)
-+.+.+++.|+||.+..
T Consensus 62 ~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 62 GDYEALKDADIVVITAG 78 (141)
T ss_dssp SSGGGGTTESEEEETTS
T ss_pred ccccccccccEEEEecc
Confidence 35567889999999875
No 132
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.81 E-value=0.061 Score=61.46 Aligned_cols=170 Identities=15% Similarity=0.113 Sum_probs=90.1
Q ss_pred CcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcC---cccCcccCcccchHHHHHHHHHHhhCCCCeE
Q 001074 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLS---RQFLFRDWNIGQAKSTVAASAATSINPRLNI 652 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLn---RQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I 652 (1163)
.+|.|||+|.+|+.++.+|++.|. .++++|.+.=.....- ++.+=+-.+-|.-..+.+...+.++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~------~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l------ 73 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV------DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARL------ 73 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC------EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCe------
Confidence 489999999999999999999998 8999986643222100 0000000011111111111112111
Q ss_pred EEEeccCCcccccccchhhhccCCEEEEccC-chHHHHHH----HhhcccccccEEecCCCCc-ccceEEEeCCcccccC
Q 001074 653 EALQNRVGPETENVFDDTFWENITCVINALD-NVNARLYV----DQRCLYFQKPLLESGTLGA-KCNTQMVIPHLTENYG 726 (1163)
Q Consensus 653 ~~~~~~v~~~~e~~~~~~f~~~~DvVi~alD-n~~aR~~v----~~~c~~~~~PlI~sgt~G~-~G~v~viip~~t~~y~ 726 (1163)
+.. + + + +-++++|+||.|+- +.+.++.+ ...|-..+..+.. -|.+. -........+...+.+
T Consensus 74 ~~~-------~-~-~--~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~s-nTS~~~~~~la~~~~~~~r~~g 141 (286)
T PRK07819 74 RFT-------T-D-L--GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLAS-NTSSIPIMKLAAATKRPGRVLG 141 (286)
T ss_pred Eee-------C-C-H--HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEE-CCCCCCHHHHHhhcCCCccEEE
Confidence 111 1 1 1 22589999999975 55666654 3333233444543 33332 1111111111111112
Q ss_pred CC-CCCCCCCCCCccccCCCCChhhHHHHHHHHhhhhccCChhhh
Q 001074 727 AS-RDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEV 770 (1163)
Q Consensus 727 ~~-~dp~~~~~p~Ct~~~fP~~~~Hci~wAr~~F~~lF~~~~~~~ 770 (1163)
.+ -+|+. ..|...+-.-+.....++++++.++....++.|-.+
T Consensus 142 ~hf~~P~~-~~~lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv~v 185 (286)
T PRK07819 142 LHFFNPVP-VLPLVELVPTLVTSEATVARAEEFASDVLGKQVVRA 185 (286)
T ss_pred EecCCCcc-cCceEEEeCCCCCCHHHHHHHHHHHHHhCCCCceEe
Confidence 21 23332 345667778889999999999999887777766443
No 133
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=94.76 E-value=0.049 Score=64.78 Aligned_cols=76 Identities=26% Similarity=0.309 Sum_probs=57.6
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEee
Q 001074 175 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (1163)
Q Consensus 175 kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~ 254 (1163)
.|.+++|+|||+|-+|.-+|++|...|++.|+|... + .-||+.+++++. ..+....
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNR----------T---------~erA~~La~~~~-----~~~~~l~ 230 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANR----------T---------LERAEELAKKLG-----AEAVALE 230 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcC----------C---------HHHHHHHHHHhC-----CeeecHH
Confidence 388999999999999999999999999999999643 2 237777777775 2222211
Q ss_pred cCCChhhcCCCcEEEEecCChh
Q 001074 255 SKLTKEQLSDFQAVVFTDISLD 276 (1163)
Q Consensus 255 ~~l~~e~l~~fdvVI~~~~~~~ 276 (1163)
-..+.+..+||||.++..+.
T Consensus 231 --el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 231 --ELLEALAEADVVISSTSAPH 250 (414)
T ss_pred --HHHHhhhhCCEEEEecCCCc
Confidence 12357889999999987544
No 134
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.74 E-value=0.067 Score=61.03 Aligned_cols=75 Identities=19% Similarity=0.088 Sum_probs=53.1
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEee-
Q 001074 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT- 254 (1163)
Q Consensus 176 L~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~- 254 (1163)
+++++|+|+|+||.|..++..|...|+++|+|++.+ ..||+.+++++..... +....
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt-------------------~~ka~~La~~~~~~~~---~~~~~~ 180 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN-------------------PDKLSRLVDLGVQVGV---ITRLEG 180 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhhhcCc---ceeccc
Confidence 567899999999999999999999999999999742 2377777776643311 11111
Q ss_pred -cCCChhhcCCCcEEEEecC
Q 001074 255 -SKLTKEQLSDFQAVVFTDI 273 (1163)
Q Consensus 255 -~~l~~e~l~~fdvVI~~~~ 273 (1163)
.++ .+.+.++|+||.|+.
T Consensus 181 ~~~~-~~~~~~~DiVInaTp 199 (282)
T TIGR01809 181 DSGG-LAIEKAAEVLVSTVP 199 (282)
T ss_pred hhhh-hhcccCCCEEEECCC
Confidence 111 134467899998864
No 135
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.53 E-value=0.15 Score=61.82 Aligned_cols=95 Identities=24% Similarity=0.218 Sum_probs=65.3
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 001074 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (1163)
Q Consensus 176 L~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~ 255 (1163)
|++++|+|+|.|++|.++|+.|+..|. .++++|.+.- ...+...++|.+++ +.....
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~------------------~~~~~~~~~l~~~~----~~~~~~ 59 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEE------------------DQLKEALEELGELG----IELVLG 59 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch------------------HHHHHHHHHHHhcC----CEEEeC
Confidence 678999999999999999999999997 7999987431 01122223343332 334444
Q ss_pred CCChhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEE
Q 001074 256 KLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIK 296 (1163)
Q Consensus 256 ~l~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~ 296 (1163)
...++...++|+||.+..... ...+-..|++++ ||++.
T Consensus 60 ~~~~~~~~~~d~vv~~~g~~~-~~~~~~~a~~~~--i~~~~ 97 (450)
T PRK14106 60 EYPEEFLEGVDLVVVSPGVPL-DSPPVVQAHKKG--IEVIG 97 (450)
T ss_pred CcchhHhhcCCEEEECCCCCC-CCHHHHHHHHCC--CcEEe
Confidence 444556678999998775322 234667789999 88875
No 136
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.51 E-value=0.071 Score=60.81 Aligned_cols=76 Identities=13% Similarity=0.217 Sum_probs=51.7
Q ss_pred HhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeE
Q 001074 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 652 (1163)
Q Consensus 573 L~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I 652 (1163)
+++++|+|+|+||.|..++..|+..|+ .+|+|++.+ ..|++.+++.+.... .+
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~-----~~i~I~nRt-------------------~~ka~~La~~~~~~~---~~ 175 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGV-----TDITVINRN-------------------PDKLSRLVDLGVQVG---VI 175 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCC-----CeEEEEeCC-------------------HHHHHHHHHHhhhcC---cc
Confidence 568899999999999999999999999 899998532 247777776654321 11
Q ss_pred EEEeccCCcccccccchhhhccCCEEEEcc
Q 001074 653 EALQNRVGPETENVFDDTFWENITCVINAL 682 (1163)
Q Consensus 653 ~~~~~~v~~~~e~~~~~~f~~~~DvVi~al 682 (1163)
..+.. . .+ + .....++|+||||+
T Consensus 176 ~~~~~-~-~~---~--~~~~~~~DiVInaT 198 (282)
T TIGR01809 176 TRLEG-D-SG---G--LAIEKAAEVLVSTV 198 (282)
T ss_pred eeccc-h-hh---h--hhcccCCCEEEECC
Confidence 11110 0 00 0 12236799999997
No 137
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=94.41 E-value=0.12 Score=58.73 Aligned_cols=75 Identities=24% Similarity=0.342 Sum_probs=53.6
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEee
Q 001074 175 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (1163)
Q Consensus 175 kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~ 254 (1163)
.+.+++|+|+|+||+|..+++.|...|+.+|++++.+ ..|++.+++.+....+ +.+ .
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~-------------------~~~a~~l~~~~~~~~~-~~~---~ 176 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT-------------------VERAEELAKLFGALGK-AEL---D 176 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccc-eee---c
Confidence 4678899999999999999999999999999999752 2366666666653321 222 1
Q ss_pred cCCChhhcCCCcEEEEecC
Q 001074 255 SKLTKEQLSDFQAVVFTDI 273 (1163)
Q Consensus 255 ~~l~~e~l~~fdvVI~~~~ 273 (1163)
... .+.+.++|+||.|+.
T Consensus 177 ~~~-~~~~~~~DivInaTp 194 (278)
T PRK00258 177 LEL-QEELADFDLIINATS 194 (278)
T ss_pred ccc-hhccccCCEEEECCc
Confidence 111 245678899998864
No 138
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=94.30 E-value=0.071 Score=58.13 Aligned_cols=84 Identities=26% Similarity=0.402 Sum_probs=60.5
Q ss_pred HhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCe
Q 001074 573 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (1163)
Q Consensus 573 L~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~ 651 (1163)
+.+++++++| |||||-++.|.|+.-|+ ..+.|.| ..| | --+-.+++++||..+
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgi-----k~~~i~~--~~E--n-----------------~~a~akL~ai~p~~~ 56 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGI-----KVLVIDD--SEE--N-----------------PEAIAKLQAINPSVS 56 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCc-----hheeehh--hhh--C-----------------HHHHHHHhccCCCce
Confidence 5678888886 99999999999999999 4555443 221 1 225667999999999
Q ss_pred EEEEeccCCc--ccccccch--hhhccCCEEEEcc
Q 001074 652 IEALQNRVGP--ETENVFDD--TFWENITCVINAL 682 (1163)
Q Consensus 652 I~~~~~~v~~--~~e~~~~~--~f~~~~DvVi~al 682 (1163)
+..+...+.. +.+..|+. .-+...|++||.-
T Consensus 57 v~F~~~DVt~~~~~~~~f~ki~~~fg~iDIlINgA 91 (261)
T KOG4169|consen 57 VIFIKCDVTNRGDLEAAFDKILATFGTIDILINGA 91 (261)
T ss_pred EEEEEeccccHHHHHHHHHHHHHHhCceEEEEccc
Confidence 9999988875 22222322 2257789999864
No 139
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.29 E-value=0.085 Score=63.82 Aligned_cols=36 Identities=33% Similarity=0.582 Sum_probs=32.8
Q ss_pred HhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCc
Q 001074 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (1163)
Q Consensus 573 L~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~ 614 (1163)
+++++|+|+|+|++|.++++.|+..|. +++++|.+.
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~------~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA------KVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEeCCc
Confidence 578999999999999999999999998 899998764
No 140
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=94.28 E-value=0.096 Score=59.56 Aligned_cols=36 Identities=22% Similarity=0.493 Sum_probs=32.6
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
.+.+++|+|+|+||+|..+++.|+..|+ .+|+|++.
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~-----~~V~v~~R 155 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGV-----AEITIVNR 155 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCC-----CEEEEEeC
Confidence 4678899999999999999999999998 79999864
No 141
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.26 E-value=0.16 Score=59.10 Aligned_cols=170 Identities=15% Similarity=0.119 Sum_probs=90.8
Q ss_pred CcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEEEE
Q 001074 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 655 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~~~ 655 (1163)
++|.|||+|.+|+.++..|+..|. .++++|.+.=....+ +.....+.+.+.+..+. ....
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~------~V~l~D~~~~~~~~~------------~~~i~~~~~~~~~~~~~--~~~~ 67 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL------DVVAWDPAPGAEAAL------------RANVANAWPALERQGLA--PGAS 67 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC------eEEEEeCCHHHHHHH------------HHHHHHHHHHHHHcCCC--hhhH
Confidence 579999999999999999999998 999999764211110 01111111111111110 0000
Q ss_pred eccCCcccccccchhhhccCCEEEEccC-chHHHHHHHhhcccccc--cEEecCCCCcccc-eEEEeCCcccccCCC-CC
Q 001074 656 QNRVGPETENVFDDTFWENITCVINALD-NVNARLYVDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHLTENYGAS-RD 730 (1163)
Q Consensus 656 ~~~v~~~~e~~~~~~f~~~~DvVi~alD-n~~aR~~v~~~c~~~~~--PlI~sgt~G~~G~-v~viip~~t~~y~~~-~d 730 (1163)
..++...+ . + .+-++++|+|+.|+- +.+.++-+-......-. -+|.|.|.+..-. ..-...+-.-+...+ -.
T Consensus 68 ~~~i~~~~-~-l-~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~Hffn 144 (321)
T PRK07066 68 PARLRFVA-T-I-EACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFN 144 (321)
T ss_pred HhhceecC-C-H-HHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCC
Confidence 11111111 1 1 245689999999976 55556544333322222 2777777765321 110111111122221 13
Q ss_pred CCCCCCCCccccCCCCChhhHHHHHHHHhhhhccCChhhh
Q 001074 731 PPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEV 770 (1163)
Q Consensus 731 p~~~~~p~Ct~~~fP~~~~Hci~wAr~~F~~lF~~~~~~~ 770 (1163)
|+. ..|+.-+-.-|..-.-++++++++++. .++.|-.+
T Consensus 145 P~~-~~pLVEVv~g~~T~~e~~~~~~~f~~~-lGk~pV~v 182 (321)
T PRK07066 145 PVY-LLPLVEVLGGERTAPEAVDAAMGIYRA-LGMRPLHV 182 (321)
T ss_pred ccc-cCceEEEeCCCCCCHHHHHHHHHHHHH-cCCEeEec
Confidence 333 345555666688888899999998876 66655333
No 142
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=94.24 E-value=0.076 Score=54.28 Aligned_cols=36 Identities=28% Similarity=0.473 Sum_probs=31.2
Q ss_pred HhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 573 L~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
+++++|+|+|+|++|..+++.|+..|. ..++++|.+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~-----~~v~v~~r~ 52 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGA-----AKIVIVNRT 52 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEcCC
Confidence 567899999999999999999999985 588888743
No 143
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=94.22 E-value=0.13 Score=58.57 Aligned_cols=74 Identities=24% Similarity=0.310 Sum_probs=55.2
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 001074 177 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (1163)
Q Consensus 177 ~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~ 256 (1163)
+..+|+|+|+||.+..++.-|...|+.+|+|+..+ ..||+.+++.+.+..+.+........
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt-------------------~~ra~~La~~~~~~~~~~~~~~~~~~ 185 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRT-------------------RERAEELADLFGELGAAVEAAALADL 185 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccccccccccccc
Confidence 56899999999999999999999999999998742 34888888888888773333322211
Q ss_pred CChhhcCCCcEEEEec
Q 001074 257 LTKEQLSDFQAVVFTD 272 (1163)
Q Consensus 257 l~~e~l~~fdvVI~~~ 272 (1163)
+....+|+||-|+
T Consensus 186 ---~~~~~~dliINaT 198 (283)
T COG0169 186 ---EGLEEADLLINAT 198 (283)
T ss_pred ---ccccccCEEEECC
Confidence 1111688888776
No 144
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.17 E-value=0.16 Score=58.17 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=44.6
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEE
Q 001074 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVL 250 (1163)
Q Consensus 176 L~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V 250 (1163)
+++++|+|+|+||+|..++.-|+..|+++|+|++.+.- ...|++.+++.+.+..+.+.+
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~----------------~~~~a~~l~~~l~~~~~~~~~ 182 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD----------------FYERAEQTAEKIKQEVPECIV 182 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch----------------HHHHHHHHHHHHhhcCCCcee
Confidence 56789999999999999999999999999999885210 113677777777655554333
No 145
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.15 E-value=0.11 Score=54.24 Aligned_cols=111 Identities=21% Similarity=0.258 Sum_probs=63.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecCC-
Q 001074 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL- 257 (1163)
Q Consensus 179 s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~l- 257 (1163)
.+|.+||+|-.|+.+|+||+.+|. .++++|.+.-....+... |-..+....+.+++. ++-+......-
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~--------g~~~~~s~~e~~~~~--dvvi~~v~~~~~ 70 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEA--------GAEVADSPAEAAEQA--DVVILCVPDDDA 70 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHT--------TEEEESSHHHHHHHB--SEEEE-SSSHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHh--------hhhhhhhhhhHhhcc--cceEeecccchh
Confidence 489999999999999999999998 689998653222222111 111111112222211 34444333210
Q ss_pred Chh------h---cCCCcEEEEec-CChhHHHHHHHHHHhcCCCceeEEeeecce
Q 001074 258 TKE------Q---LSDFQAVVFTD-ISLDKAIEFDDFCHNHQPAISFIKAEVRGL 302 (1163)
Q Consensus 258 ~~e------~---l~~fdvVI~~~-~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~ 302 (1163)
.++ . +..=++||++. .+++...++.+.+.+++ +.||.+.+.|.
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g--~~~vdapV~Gg 123 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKG--VRYVDAPVSGG 123 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTT--EEEEEEEEESH
T ss_pred hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhcc--ceeeeeeeecc
Confidence 011 1 22335666654 57888899999999999 99999988774
No 146
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=94.09 E-value=0.14 Score=58.93 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=52.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcC----CCEEEEe
Q 001074 179 SNILVSGMQGLGAEIAKNLILAGVK-SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNN----AVVLSTL 253 (1163)
Q Consensus 179 s~VlIiG~gglGsEiaKNLvlaGVg-~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp----~V~V~~~ 253 (1163)
.+|.|+|+|++|+.+|..|+..|+. +|.|+|.+ ..+++..+..|....+ .+.+..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~-------------------~~~~~~~a~dL~~~~~~~~~~~~i~~- 60 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDIN-------------------EEKAEGEALDLEDALAFLPSPVKIKA- 60 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------cchhhHhHhhHHHHhhccCCCeEEEc-
Confidence 3799999999999999999999985 89999953 2245555666655432 233332
Q ss_pred ecCCChhhcCCCcEEEEecC
Q 001074 254 TSKLTKEQLSDFQAVVFTDI 273 (1163)
Q Consensus 254 ~~~l~~e~l~~fdvVI~~~~ 273 (1163)
.+.+.+.++|+||.|..
T Consensus 61 ---~~~~~l~~aDIVIitag 77 (306)
T cd05291 61 ---GDYSDCKDADIVVITAG 77 (306)
T ss_pred ---CCHHHhCCCCEEEEccC
Confidence 23345789999999876
No 147
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=94.06 E-value=0.039 Score=51.39 Aligned_cols=41 Identities=24% Similarity=0.420 Sum_probs=31.0
Q ss_pred ccccCchhhHhhhhhhHHHHHhhcCCcccc-eeeeeeeccCC
Q 001074 500 RAVLNPMAAMFGGIVGQEVVKACSGKFHPL-YQFFYFDSVES 540 (1163)
Q Consensus 500 ~~el~PvaA~iGGiaAQEVIKaiTgkf~PI-~q~~~fD~ie~ 540 (1163)
.+-|.|+.+++|.+.|+|+||.|+|.-.|+ +.+++||+.+.
T Consensus 23 ~GVlg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~~ 64 (84)
T PF05237_consen 23 AGVLGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLNM 64 (84)
T ss_dssp S-B-HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTTT
T ss_pred cccccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCCC
Confidence 468999999999999999999999987775 57888998754
No 148
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=93.91 E-value=0.11 Score=62.56 Aligned_cols=77 Identities=13% Similarity=0.207 Sum_probs=54.3
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEee
Q 001074 175 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (1163)
Q Consensus 175 kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~ 254 (1163)
.+.+++|+|+|+||.|..++++|...|+.+|+|+... ..||+.+++.+. .+.+....
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt-------------------~~ra~~La~~~~----~~~~~~~~ 234 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT-------------------IEKAQKITSAFR----NASAHYLS 234 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHhc----CCeEecHH
Confidence 4678999999999999999999999999999997642 125555555442 12222111
Q ss_pred cCCChhhcCCCcEEEEecCChh
Q 001074 255 SKLTKEQLSDFQAVVFTDISLD 276 (1163)
Q Consensus 255 ~~l~~e~l~~fdvVI~~~~~~~ 276 (1163)
++ .+.+.++|+||.|+..+.
T Consensus 235 -~l-~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 235 -EL-PQLIKKADIIIAAVNVLE 254 (414)
T ss_pred -HH-HHHhccCCEEEECcCCCC
Confidence 11 356789999999987533
No 149
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=93.86 E-value=0.13 Score=51.39 Aligned_cols=99 Identities=23% Similarity=0.225 Sum_probs=60.3
Q ss_pred cEEEEec-CcchHHHHHHHHH-cccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEEE
Q 001074 577 KVFIVGS-GALGCEFLKNVAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 654 (1163)
Q Consensus 577 kVlvVGa-GglGce~lknLa~-~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~~ 654 (1163)
||.|+|+ |-.|.++++.+.. -|+ --.-.+|... |. +-..|+|. .+..-...+.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~-----~lv~~v~~~~---~~------~~g~d~g~--------~~~~~~~~~~--- 56 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGF-----ELVGAVDRKP---SA------KVGKDVGE--------LAGIGPLGVP--- 56 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTE-----EEEEEEETTT---ST------TTTSBCHH--------HCTSST-SSB---
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCc-----EEEEEEecCC---cc------cccchhhh--------hhCcCCcccc---
Confidence 7999999 9999999999998 666 2334454332 00 11234441 1111111111
Q ss_pred EeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCcc
Q 001074 655 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAK 711 (1163)
Q Consensus 655 ~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~~ 711 (1163)
+..+. ++.+..+|+||+++ ++++-...-+.|.++++|+| .||.|+.
T Consensus 57 ----v~~~l-----~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~V-iGTTG~~ 102 (124)
T PF01113_consen 57 ----VTDDL-----EELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLV-IGTTGFS 102 (124)
T ss_dssp ----EBS-H-----HHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEE-EE-SSSH
T ss_pred ----cchhH-----HHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEE-EECCCCC
Confidence 11111 34556699999999 78888888889999999999 6888874
No 150
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=93.82 E-value=0.02 Score=60.61 Aligned_cols=93 Identities=17% Similarity=0.297 Sum_probs=56.0
Q ss_pred HHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCC
Q 001074 570 QKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPR 649 (1163)
Q Consensus 570 q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~ 649 (1163)
...|.+++|.|||+|.||.++++.|...|+ +++.+|...-....... +-+... -+.+ +.+.
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~------~V~~~d~~~~~~~~~~~-~~~~~~--------~l~e----ll~~ 91 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAVARRLKAFGM------RVIGYDRSPKPEEGADE-FGVEYV--------SLDE----LLAQ 91 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHHHHHHHHTT-------EEEEEESSCHHHHHHHH-TTEEES--------SHHH----HHHH
T ss_pred ccccCCCEEEEEEEcCCcCeEeeeeecCCc------eeEEecccCChhhhccc-ccceee--------ehhh----hcch
Confidence 347899999999999999999999999998 89999876543220000 000000 0111 1122
Q ss_pred CeEEEEeccCCcccccccchhhhccCC---EEEEc
Q 001074 650 LNIEALQNRVGPETENVFDDTFWENIT---CVINA 681 (1163)
Q Consensus 650 ~~I~~~~~~v~~~~e~~~~~~f~~~~D---vVi~a 681 (1163)
..|.......+++|.++++.++++... ++||.
T Consensus 92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~ 126 (178)
T PF02826_consen 92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNV 126 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEES
T ss_pred hhhhhhhhccccccceeeeeeeeeccccceEEEec
Confidence 456666666666777777777665544 55554
No 151
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=93.81 E-value=0.24 Score=58.86 Aligned_cols=90 Identities=21% Similarity=0.261 Sum_probs=61.1
Q ss_pred EEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecCCCh
Q 001074 181 ILVSGMQGLGAEIAKNLILAGVK-SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTK 259 (1163)
Q Consensus 181 VlIiG~gglGsEiaKNLvlaGVg-~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~l~~ 259 (1163)
|+|+|+|.+|..+++.|+..+-- ++++.|.+. .|++..++.+ ....+....-++++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~-------------------~~~~~~~~~~----~~~~~~~~~~d~~~ 57 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP-------------------EKAERLAEKL----LGDRVEAVQVDVND 57 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH-------------------HHHHHHHT------TTTTEEEEE--TTT
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH-------------------HHHHHHHhhc----cccceeEEEEecCC
Confidence 79999999999999999999854 899988522 2444444433 23344444444432
Q ss_pred -----hhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEE
Q 001074 260 -----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIK 296 (1163)
Q Consensus 260 -----e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~ 296 (1163)
+.++++|+||.|..+. ....+-+.|.+.+ +.+|.
T Consensus 58 ~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g--~~yvD 96 (386)
T PF03435_consen 58 PESLAELLRGCDVVINCAGPF-FGEPVARACIEAG--VHYVD 96 (386)
T ss_dssp HHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT---EEEE
T ss_pred HHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhC--CCeec
Confidence 4688999999998766 6678899999999 88887
No 152
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=93.80 E-value=0.1 Score=56.99 Aligned_cols=95 Identities=19% Similarity=0.215 Sum_probs=69.5
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCc-ccccCcCcccCcccCcccchHHHHHHHHHHhhCCCC
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV-IEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 650 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~-Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~ 650 (1163)
.|.+++|+|||.|.+|..=++.|+.+|. +++|+-.+. -+..++ .+ .+
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga------~v~Vvs~~~~~el~~~-------------------~~----~~--- 56 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGA------DVTVVSPEFEPELKAL-------------------IE----EG--- 56 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCC------EEEEEcCCccHHHHHH-------------------HH----hc---
Confidence 5788999999999999999999999996 999986554 111111 11 11
Q ss_pred eEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecC
Q 001074 651 NIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESG 706 (1163)
Q Consensus 651 ~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sg 706 (1163)
+|..+... |+.+.+..+++||-|+||.+--..+-+.|..+++|+=.+.
T Consensus 57 ~i~~~~~~--------~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D 104 (210)
T COG1648 57 KIKWIERE--------FDAEDLDDAFLVIAATDDEELNERIAKAARERRILVNVVD 104 (210)
T ss_pred Ccchhhcc--------cChhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceeccC
Confidence 12333222 3345566799999999999999999999999998876433
No 153
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=93.76 E-value=0.23 Score=53.54 Aligned_cols=86 Identities=17% Similarity=0.196 Sum_probs=68.1
Q ss_pred hhccCHHHHHHhhcCeEEEEcCChHHHH-HHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHH
Q 001074 165 LAVYGRETMRRLFASNILVSGMQGLGAE-IAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQE 243 (1163)
Q Consensus 165 i~l~G~e~q~kL~~s~VlIiG~gglGsE-iaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~e 243 (1163)
+..=+..+++++++++|.|+|.|+.|++ ++..|..+||+.+.
T Consensus 92 ~g~~~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~------------------------------------- 134 (193)
T TIGR03882 92 LGVDPAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAP------------------------------------- 134 (193)
T ss_pred cCCCHHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccC-------------------------------------
Confidence 4455678899999999999999999988 99999999997654
Q ss_pred hcCCCEEEEeecCCChhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEE
Q 001074 244 LNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSV 306 (1163)
Q Consensus 244 LNp~V~V~~~~~~l~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~v 306 (1163)
++ .+.++|++.+........+|+-..+.+ +|++.+...|..+.|
T Consensus 135 --------------~~---a~l~vVl~~Dyl~p~L~~~n~~~l~~~--~~~l~v~~~~~~~~~ 178 (193)
T TIGR03882 135 --------------SE---ADLTVVLTDDYLDPELAAINQRALAAG--RPWLLVKPGGVQPWI 178 (193)
T ss_pred --------------CC---CCEEEEEeCCCCChHHHHHHHHHHHcC--CceEEEEeCCceEEE
Confidence 00 133556655556667778999999999 999999988877664
No 154
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.72 E-value=0.27 Score=55.90 Aligned_cols=162 Identities=15% Similarity=0.109 Sum_probs=82.9
Q ss_pred CcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCC-C-----
Q 001074 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINP-R----- 649 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np-~----- 649 (1163)
.+|.|||+|.+|+.++..|+..|. .++++|.+.=... + ++...+-..+.+.+... +
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~------~V~~~d~~~~~~~---~---------~~~~i~~~l~~~~~~g~~~~~~~~ 65 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY------DVVMVDISDAAVD---R---------GLATITKSLDRLVKKGKMTEADKE 65 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC------ceEEEeCCHHHHH---H---------HHHHHHHHHHHHHHcCCCCHHHHH
Confidence 479999999999999999999998 8999986532111 0 11111111111111110 0
Q ss_pred ---CeEEEEeccCCcccccccchhhhccCCEEEEcc-CchHHHHHHHhhccc---ccccEEecCCCCcccc-eEEEeCCc
Q 001074 650 ---LNIEALQNRVGPETENVFDDTFWENITCVINAL-DNVNARLYVDQRCLY---FQKPLLESGTLGAKCN-TQMVIPHL 721 (1163)
Q Consensus 650 ---~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~al-Dn~~aR~~v~~~c~~---~~~PlI~sgt~G~~G~-v~viip~~ 721 (1163)
.++... .+ .+-.+++|+||.|+ .+...+..+-..... .+. +|.+.|.|.... ..-..++.
T Consensus 66 ~~~~~l~~~-----~~------~~~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~-il~s~ts~~~~~~la~~~~~~ 133 (282)
T PRK05808 66 AALARITGT-----TD------LDDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEA-ILATNTSSLSITELAAATKRP 133 (282)
T ss_pred HHHhCeEEe-----CC------HHHhccCCeeeecccccHHHHHHHHHHHHhhCCCCc-EEEECCCCCCHHHHHHhhCCC
Confidence 011111 10 11257899999998 556655433222222 123 445666654433 11111211
Q ss_pred ccccCCCCCCCCCCCCCccccCCCCChhhHHHHHHHHhhhhccCChh
Q 001074 722 TENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPA 768 (1163)
Q Consensus 722 t~~y~~~~dp~~~~~p~Ct~~~fP~~~~Hci~wAr~~F~~lF~~~~~ 768 (1163)
....+.....|....|...+..-+...+..++.++.+|+ -++..|-
T Consensus 134 ~r~ig~h~~~P~~~~~~vev~~g~~t~~e~~~~~~~l~~-~lGk~pv 179 (282)
T PRK05808 134 DKVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAK-KIGKTPV 179 (282)
T ss_pred cceEEeeccCCcccCccEEEeCCCCCCHHHHHHHHHHHH-HcCCeeE
Confidence 112222222122223334455557778888889988886 4666554
No 155
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=93.70 E-value=0.084 Score=62.85 Aligned_cols=76 Identities=26% Similarity=0.357 Sum_probs=57.5
Q ss_pred HHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCC
Q 001074 570 QKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPR 649 (1163)
Q Consensus 570 q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~ 649 (1163)
+..|.+++|+|||||-+|.-++++|+..|+ .+|+|+ ||+. .||+-+|+.+.
T Consensus 173 ~~~L~~~~vlvIGAGem~~lva~~L~~~g~-----~~i~Ia----------NRT~---------erA~~La~~~~----- 223 (414)
T COG0373 173 FGSLKDKKVLVIGAGEMGELVAKHLAEKGV-----KKITIA----------NRTL---------ERAEELAKKLG----- 223 (414)
T ss_pred hcccccCeEEEEcccHHHHHHHHHHHhCCC-----CEEEEE----------cCCH---------HHHHHHHHHhC-----
Confidence 344889999999999999999999999999 899985 7774 37777777664
Q ss_pred CeEEEEeccCCcccccccchhhhccCCEEEEccCc
Q 001074 650 LNIEALQNRVGPETENVFDDTFWENITCVINALDN 684 (1163)
Q Consensus 650 ~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn 684 (1163)
..+..+. .+ ..++..+|+||.|+..
T Consensus 224 ~~~~~l~--------el--~~~l~~~DvVissTsa 248 (414)
T COG0373 224 AEAVALE--------EL--LEALAEADVVISSTSA 248 (414)
T ss_pred CeeecHH--------HH--HHhhhhCCEEEEecCC
Confidence 2222221 11 4567899999999764
No 156
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.58 E-value=0.073 Score=48.62 Aligned_cols=32 Identities=25% Similarity=0.564 Sum_probs=28.7
Q ss_pred cEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCc
Q 001074 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (1163)
Q Consensus 577 kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~ 614 (1163)
||+|||+|.+|||++..|+..|. ++++++...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~------~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK------EVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS------EEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc------EEEEEeccc
Confidence 68999999999999999999997 889987643
No 157
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=93.53 E-value=0.11 Score=62.37 Aligned_cols=76 Identities=17% Similarity=0.326 Sum_probs=52.5
Q ss_pred HHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCC
Q 001074 571 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 650 (1163)
Q Consensus 571 ~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~ 650 (1163)
..+.+++|+|||+|+.|..++++|+..|+ .+|+|+. |. ..|++.+++.+. ..
T Consensus 177 ~~l~~kkvlviGaG~~a~~va~~L~~~g~-----~~I~V~n----------Rt---------~~ra~~La~~~~----~~ 228 (414)
T PRK13940 177 DNISSKNVLIIGAGQTGELLFRHVTALAP-----KQIMLAN----------RT---------IEKAQKITSAFR----NA 228 (414)
T ss_pred cCccCCEEEEEcCcHHHHHHHHHHHHcCC-----CEEEEEC----------CC---------HHHHHHHHHHhc----CC
Confidence 35788999999999999999999999999 7899873 32 125555555432 11
Q ss_pred eEEEEeccCCcccccccchhhhccCCEEEEccCc
Q 001074 651 NIEALQNRVGPETENVFDDTFWENITCVINALDN 684 (1163)
Q Consensus 651 ~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn 684 (1163)
.+..+ +.+ .+.+.++|+||+|+-.
T Consensus 229 ~~~~~--------~~l--~~~l~~aDiVI~aT~a 252 (414)
T PRK13940 229 SAHYL--------SEL--PQLIKKADIIIAAVNV 252 (414)
T ss_pred eEecH--------HHH--HHHhccCCEEEECcCC
Confidence 11111 111 3457889999999854
No 158
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.47 E-value=0.27 Score=56.36 Aligned_cols=52 Identities=21% Similarity=0.346 Sum_probs=42.1
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHH
Q 001074 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQE 243 (1163)
Q Consensus 176 L~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~e 243 (1163)
+++++|+|+|+||.+..|+-.|+..|+++|+|++.+. + ...||+.+++++..
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~--------------~--~~~ka~~la~~~~~ 173 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD--------------E--FFDKALAFAQRVNE 173 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc--------------c--HHHHHHHHHHHhhh
Confidence 5678999999999999999999999999999998521 0 13478888777654
No 159
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.34 E-value=0.05 Score=57.94 Aligned_cols=164 Identities=21% Similarity=0.281 Sum_probs=79.0
Q ss_pred cEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCccc---CcccCcccchHHHHHHHHHHhhCCCCeEE
Q 001074 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQF---LFRDWNIGQAKSTVAASAATSINPRLNIE 653 (1163)
Q Consensus 577 kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQf---Lf~~~dIG~~Ka~vaa~~l~~~np~~~I~ 653 (1163)
||.|||+|.+|..++-.+++.|. .++++|.+.-.....-+.. |-+..+-|+...+.+...+.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~------~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~------ 68 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY------EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS------ 68 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS------EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE------
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC------cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc------
Confidence 68999999999999999999998 9999998654332211110 00000112222222233333222
Q ss_pred EEeccCCcccccccchhhhccCCEEEEccC-chHHHHH----HHhhcccccccEEecCCCCcccc-eEEEeCCcccccCC
Q 001074 654 ALQNRVGPETENVFDDTFWENITCVINALD-NVNARLY----VDQRCLYFQKPLLESGTLGAKCN-TQMVIPHLTENYGA 727 (1163)
Q Consensus 654 ~~~~~v~~~~e~~~~~~f~~~~DvVi~alD-n~~aR~~----v~~~c~~~~~PlI~sgt~G~~G~-v~viip~~t~~y~~ 727 (1163)
. ...+ .+. .++|+||.|+- +.+.++- +++.|.. +. +|-+.|.+..-. ....+++-..+.+.
T Consensus 69 ~-~~dl---------~~~-~~adlViEai~E~l~~K~~~~~~l~~~~~~-~~-ilasnTSsl~i~~la~~~~~p~R~ig~ 135 (180)
T PF02737_consen 69 F-TTDL---------EEA-VDADLVIEAIPEDLELKQELFAELDEICPP-DT-ILASNTSSLSISELAAALSRPERFIGM 135 (180)
T ss_dssp E-ESSG---------GGG-CTESEEEE-S-SSHHHHHHHHHHHHCCS-T-TS-EEEE--SSS-HHHHHTTSSTGGGEEEE
T ss_pred c-ccCH---------HHH-hhhheehhhccccHHHHHHHHHHHHHHhCC-Cc-eEEecCCCCCHHHHHhccCcCceEEEE
Confidence 1 1111 223 38999999985 5566553 4444422 22 343444433111 00001110111111
Q ss_pred C-CCCCCCCCCCccccCCCCChhhHHHHHHHHhhhhccCCh
Q 001074 728 S-RDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTP 767 (1163)
Q Consensus 728 ~-~dp~~~~~p~Ct~~~fP~~~~Hci~wAr~~F~~lF~~~~ 767 (1163)
+ -.|+ ...|+.-+-.-|...+-+++|++++++.+ ++.|
T Consensus 136 Hf~~P~-~~~~lVEvv~~~~T~~~~~~~~~~~~~~~-gk~p 174 (180)
T PF02737_consen 136 HFFNPP-HLMPLVEVVPGPKTSPETVDRVRALLRSL-GKTP 174 (180)
T ss_dssp EE-SST-TT--EEEEEE-TTS-HHHHHHHHHHHHHT-T-EE
T ss_pred eccccc-ccCceEEEeCCCCCCHHHHHHHHHHHHHC-CCEE
Confidence 1 1233 34567777778999999999999988766 5443
No 160
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.12 E-value=0.079 Score=60.42 Aligned_cols=163 Identities=15% Similarity=0.175 Sum_probs=83.2
Q ss_pred CcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCccc--Cccc-CcccchHHHHHHHHHHhhCCCCeE
Q 001074 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQF--LFRD-WNIGQAKSTVAASAATSINPRLNI 652 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQf--Lf~~-~dIG~~Ka~vaa~~l~~~np~~~I 652 (1163)
++|.|||+|.+|+.++.+|+..|. +++++|.|.-....+.++. ++.. ...|.-.. +...+....+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~i-- 69 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF------QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTE----AARQAALARL-- 69 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC------cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCH----HHHHHHHhCe--
Confidence 479999999999999999999997 8999987643222211110 0000 00000000 0000011111
Q ss_pred EEEeccCCcccccccchhhhccCCEEEEccCchH-HHHH----HHhhcccccccE-EecCCCCcccceEEEeCC----cc
Q 001074 653 EALQNRVGPETENVFDDTFWENITCVINALDNVN-ARLY----VDQRCLYFQKPL-LESGTLGAKCNTQMVIPH----LT 722 (1163)
Q Consensus 653 ~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~-aR~~----v~~~c~~~~~Pl-I~sgt~G~~G~v~viip~----~t 722 (1163)
+.. . ++ .+-.+++|+||.|+.+.. .+.- +.+.|. .+..+ +++.|....--.. ...+ ..
T Consensus 70 ~~~-----~---~~--~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~-~~~il~~~tSt~~~~~l~~-~~~~~~r~~g 137 (288)
T PRK09260 70 SYS-----L---DL--KAAVADADLVIEAVPEKLELKKAVFETADAHAP-AECYIATNTSTMSPTEIAS-FTKRPERVIA 137 (288)
T ss_pred EEe-----C---cH--HHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCC-CCcEEEEcCCCCCHHHHHh-hcCCcccEEE
Confidence 111 0 00 234678999999987653 2332 233332 23333 4555544321111 1111 11
Q ss_pred cccCCCCCCCCCCCCCccccCCCCChhhHHHHHHHHhhhhccCCh
Q 001074 723 ENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTP 767 (1163)
Q Consensus 723 ~~y~~~~dp~~~~~p~Ct~~~fP~~~~Hci~wAr~~F~~lF~~~~ 767 (1163)
-+|- .|.. ..++.-+-.-|...+.++++++.+++.+ +..+
T Consensus 138 ~h~~---~Pv~-~~~Lve~v~g~~t~~~~~~~~~~~l~~l-g~~~ 177 (288)
T PRK09260 138 MHFF---NPVH-KMKLVELIRGLETSDETVQVAKEVAEQM-GKET 177 (288)
T ss_pred EecC---CCcc-cCceEEEeCCCCCCHHHHHHHHHHHHHc-CCeE
Confidence 2222 2332 3466667777888888999999988744 4443
No 161
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=93.07 E-value=0.21 Score=57.00 Aligned_cols=75 Identities=21% Similarity=0.339 Sum_probs=53.3
Q ss_pred HhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeE
Q 001074 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 652 (1163)
Q Consensus 573 L~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I 652 (1163)
+.+++++|+||||.+..++-.|+..|+ .+|+|+. |- ..|++-+++...+..+.+..
T Consensus 124 ~~~~~vlilGAGGAarAv~~aL~~~g~-----~~i~V~N----------Rt---------~~ra~~La~~~~~~~~~~~~ 179 (283)
T COG0169 124 VTGKRVLILGAGGAARAVAFALAEAGA-----KRITVVN----------RT---------RERAEELADLFGELGAAVEA 179 (283)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCC-----CEEEEEe----------CC---------HHHHHHHHHHhhhccccccc
Confidence 357899999999999999999999999 7899974 22 34778888887776652211
Q ss_pred EEEeccCCcccccccchhhhccCCEEEEcc
Q 001074 653 EALQNRVGPETENVFDDTFWENITCVINAL 682 (1163)
Q Consensus 653 ~~~~~~v~~~~e~~~~~~f~~~~DvVi~al 682 (1163)
.... +.+. .+.+|+||||+
T Consensus 180 ~~~~-----~~~~------~~~~dliINaT 198 (283)
T COG0169 180 AALA-----DLEG------LEEADLLINAT 198 (283)
T ss_pred cccc-----cccc------ccccCEEEECC
Confidence 1111 1111 11689999997
No 162
>PRK10637 cysG siroheme synthase; Provisional
Probab=93.05 E-value=0.24 Score=60.40 Aligned_cols=93 Identities=15% Similarity=0.128 Sum_probs=69.1
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCe
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~ 651 (1163)
.|++++|+|||.|.++..=++.|...|. +|+||-++.- + . +..+-..-+
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga------~v~visp~~~------------~------~-------~~~l~~~~~ 57 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA------RLTVNALAFI------------P------Q-------FTAWADAGM 57 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEcCCCC------------H------H-------HHHHHhCCC
Confidence 5789999999999999999999999996 8999854411 0 1 111111224
Q ss_pred EEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEE
Q 001074 652 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLL 703 (1163)
Q Consensus 652 I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI 703 (1163)
|+.+...+. +..+.++++||.|+||.+.-..+...|...++++-
T Consensus 58 i~~~~~~~~--------~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN 101 (457)
T PRK10637 58 LTLVEGPFD--------ESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCN 101 (457)
T ss_pred EEEEeCCCC--------hHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEE
Confidence 555554433 45578999999999999999999999999887754
No 163
>PRK04148 hypothetical protein; Provisional
Probab=93.02 E-value=0.75 Score=46.76 Aligned_cols=90 Identities=17% Similarity=0.142 Sum_probs=66.6
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 001074 177 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (1163)
Q Consensus 177 ~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~ 256 (1163)
++.+|++||+| .|..+|..|...|. .++.+|-+.- .++ ..++. .+++...+
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~-------------------aV~----~a~~~----~~~~v~dD 66 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEK-------------------AVE----KAKKL----GLNAFVDD 66 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHH-------------------HHH----HHHHh----CCeEEECc
Confidence 34689999999 99999999999996 8888885321 222 22222 13444444
Q ss_pred C---ChhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEe
Q 001074 257 L---TKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKA 297 (1163)
Q Consensus 257 l---~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~ 297 (1163)
+ +.+...++|+|-.+..+.+...-+-+++++.+ .+++..
T Consensus 67 lf~p~~~~y~~a~liysirpp~el~~~~~~la~~~~--~~~~i~ 108 (134)
T PRK04148 67 LFNPNLEIYKNAKLIYSIRPPRDLQPFILELAKKIN--VPLIIK 108 (134)
T ss_pred CCCCCHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcC--CCEEEE
Confidence 3 44678899999999999999999999999999 777643
No 164
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.00 E-value=0.21 Score=57.21 Aligned_cols=83 Identities=10% Similarity=0.121 Sum_probs=53.6
Q ss_pred HhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeE
Q 001074 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 652 (1163)
Q Consensus 573 L~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I 652 (1163)
+++++++|+||||.+..++-.|+..|+ .+|+|++.+. -...|++.+++.+....+ ..+
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~-----~~i~i~nRt~----------------~~~~ka~~la~~~~~~~~-~~~ 179 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGL-----KEIKLFNRRD----------------EFFDKALAFAQRVNENTD-CVV 179 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEeCCc----------------cHHHHHHHHHHHhhhccC-ceE
Confidence 567899999999999999999999999 8999986321 023477777777654332 222
Q ss_pred EEEeccCCcccccccchhhhccCCEEEEcc
Q 001074 653 EALQNRVGPETENVFDDTFWENITCVINAL 682 (1163)
Q Consensus 653 ~~~~~~v~~~~e~~~~~~f~~~~DvVi~al 682 (1163)
.... ... ... + .+-..++|+||||+
T Consensus 180 ~~~~--~~~-~~~-l-~~~~~~aDivINaT 204 (288)
T PRK12749 180 TVTD--LAD-QQA-F-AEALASADILTNGT 204 (288)
T ss_pred EEec--hhh-hhh-h-hhhcccCCEEEECC
Confidence 2221 110 000 1 11235789999986
No 165
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.98 E-value=0.39 Score=55.29 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=29.3
Q ss_pred CcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCc
Q 001074 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~ 614 (1163)
++|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~------~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL------QVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC------eEEEEECCH
Confidence 479999999999999999999997 789988643
No 166
>PLN00203 glutamyl-tRNA reductase
Probab=92.89 E-value=0.19 Score=61.99 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=52.9
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 001074 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (1163)
Q Consensus 176 L~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~ 255 (1163)
|.+.+|+|+|+|++|..++++|...|+.+|++++.+ ..|++.+++.+ +.+.+.+...
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs-------------------~era~~La~~~----~g~~i~~~~~ 320 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS-------------------EERVAALREEF----PDVEIIYKPL 320 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC-------------------HHHHHHHHHHh----CCCceEeecH
Confidence 668999999999999999999999999999998742 12454444333 3333332221
Q ss_pred CCChhhcCCCcEEEEecCC
Q 001074 256 KLTKEQLSDFQAVVFTDIS 274 (1163)
Q Consensus 256 ~l~~e~l~~fdvVI~~~~~ 274 (1163)
.-..+.+.++|+||.|+..
T Consensus 321 ~dl~~al~~aDVVIsAT~s 339 (519)
T PLN00203 321 DEMLACAAEADVVFTSTSS 339 (519)
T ss_pred hhHHHHHhcCCEEEEccCC
Confidence 1113567899999998753
No 167
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.88 E-value=0.33 Score=53.55 Aligned_cols=96 Identities=18% Similarity=0.293 Sum_probs=64.4
Q ss_pred CcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEEEE
Q 001074 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 655 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~~~ 655 (1163)
++++|+|||-+|..+++.|+..|- .+++||.|.- + +.+.+.. .....++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~------~Vv~Id~d~~-------------------~---~~~~~~~---~~~~~~v 49 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH------NVVLIDRDEE-------------------R---VEEFLAD---ELDTHVV 49 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC------ceEEEEcCHH-------------------H---HHHHhhh---hcceEEE
Confidence 478999999999999999999996 8899987743 1 1111211 1233444
Q ss_pred eccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhccc-ccccEEe
Q 001074 656 QNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLY-FQKPLLE 704 (1163)
Q Consensus 656 ~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~-~~~PlI~ 704 (1163)
....+. +..+.+.=..++|+++-++++-..-..+-..... +++|-+.
T Consensus 50 ~gd~t~--~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~vi 97 (225)
T COG0569 50 IGDATD--EDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVI 97 (225)
T ss_pred EecCCC--HHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEE
Confidence 433332 2223334467899999999997777766666655 7888764
No 168
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=92.78 E-value=0.053 Score=50.96 Aligned_cols=49 Identities=27% Similarity=0.445 Sum_probs=36.7
Q ss_pred CCCcHHHHHHHHHH-c-CCceeeeecCCceeecCCCcchhhcccCcHHHHH
Q 001074 1076 DNPTLRELIQWLKD-K-GLNAYSISCGSCLLFNSMFPRHKERMDKKVVDLA 1124 (1163)
Q Consensus 1076 ~~~TL~eli~~~~~-k-~l~~~~I~~g~~llY~~~~~~~~~~l~~~l~~l~ 1124 (1163)
..+||++|++.+-+ + |+..+.|+.|..+||++......++++|+|++|.
T Consensus 7 ~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elg 57 (87)
T PF14732_consen 7 KKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELG 57 (87)
T ss_dssp TT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT
T ss_pred hhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcC
Confidence 47899999998644 5 9999999999999999765344789999999993
No 169
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=92.71 E-value=0.79 Score=52.81 Aligned_cols=71 Identities=23% Similarity=0.245 Sum_probs=52.7
Q ss_pred EEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCC---CEEEEeecC
Q 001074 181 ILVSGMQGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNA---VVLSTLTSK 256 (1163)
Q Consensus 181 VlIiG~gglGsEiaKNLvlaGV-g~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~---V~V~~~~~~ 256 (1163)
|.|||+|.+|+.+|-.|+..|+ .+++|+|.+ +.|++..+..|.+..+. +.+... .
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~-------------------~~~~~g~~~DL~~~~~~~~~~~i~~~-~- 59 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN-------------------EEKAKGDALDLSHASAFLATGTIVRG-G- 59 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHhHHHhccccCCCeEEEC-C-
Confidence 5799999999999999999997 569999952 23666666677766654 333321 2
Q ss_pred CChhhcCCCcEEEEecC
Q 001074 257 LTKEQLSDFQAVVFTDI 273 (1163)
Q Consensus 257 l~~e~l~~fdvVI~~~~ 273 (1163)
+.+.+.++|+||.|..
T Consensus 60 -~~~~l~~aDiVIitag 75 (300)
T cd00300 60 -DYADAADADIVVITAG 75 (300)
T ss_pred -CHHHhCCCCEEEEcCC
Confidence 2457889999999865
No 170
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.65 E-value=0.79 Score=52.30 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=29.8
Q ss_pred CcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCc
Q 001074 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~ 614 (1163)
.+|.|||+|.+|..++..|+..|. +++++|.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~------~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF------DVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC------eEEEEeCCH
Confidence 579999999999999999999997 899998653
No 171
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=92.56 E-value=0.4 Score=55.65 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=54.3
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCC-EEEEee
Q 001074 177 FASNILVSGMQGLGAEIAKNLILAGVK-SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAV-VLSTLT 254 (1163)
Q Consensus 177 ~~s~VlIiG~gglGsEiaKNLvlaGVg-~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V-~V~~~~ 254 (1163)
+..||.|+|+|.+|+.+|-.|+..|+- +|.|+|- -..+++..+.-|+...|.. .+....
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~-------------------~~~~~~g~~~Dl~~~~~~~~~~~i~~ 65 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI-------------------NKEKAEGDAMDLSHAVPFTSPTKIYA 65 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCchhHHHHHHHHhhccccCCeEEEe
Confidence 346999999999999999999999985 7999984 1235555666666655431 233332
Q ss_pred cCCChhhcCCCcEEEEecC
Q 001074 255 SKLTKEQLSDFQAVVFTDI 273 (1163)
Q Consensus 255 ~~l~~e~l~~fdvVI~~~~ 273 (1163)
. +.+.+++.|+||.+..
T Consensus 66 ~--~~~~~~~adivIitag 82 (315)
T PRK00066 66 G--DYSDCKDADLVVITAG 82 (315)
T ss_pred C--CHHHhCCCCEEEEecC
Confidence 2 2355899999998765
No 172
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=92.48 E-value=0.42 Score=48.79 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=31.7
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 001074 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 210 (1163)
Q Consensus 176 L~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~ 210 (1163)
++..+|+|+|+|++|..+++.|...|...++++|.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r 51 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNR 51 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence 55789999999999999999999998778999885
No 173
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=92.47 E-value=0.3 Score=58.78 Aligned_cols=38 Identities=21% Similarity=0.383 Sum_probs=33.7
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcc
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVI 615 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~I 615 (1163)
.+.+++|+|+|+|.+|..+++.|..+|+ +++++|.|..
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga------~ViV~d~dp~ 246 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGA------RVIVTEVDPI 246 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEcCCch
Confidence 3688999999999999999999999998 7999986654
No 174
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.34 E-value=0.58 Score=53.97 Aligned_cols=33 Identities=27% Similarity=0.239 Sum_probs=29.3
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001074 178 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 211 (1163)
Q Consensus 178 ~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d 211 (1163)
..+|+|+|+|++|+-++-.|..+|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 3579999999999999999999996 79998864
No 175
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=92.32 E-value=0.18 Score=53.13 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=30.2
Q ss_pred HHhcCcEEEEecCcc-hHHHHHHHHHcccccCCCccEEEec
Q 001074 572 KLEDAKVFIVGSGAL-GCEFLKNVALMGVSCGNQGKLTITD 611 (1163)
Q Consensus 572 kL~~~kVlvVGaGgl-Gce~lknLa~~Gv~~~~~g~i~ivD 611 (1163)
.|.+++|+|||+|.+ |..++++|...|+ ++++++
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~------~V~v~~ 75 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA------TVTVCH 75 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC------EEEEEE
Confidence 578999999999985 8889999999998 688876
No 176
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=92.24 E-value=0.43 Score=55.27 Aligned_cols=83 Identities=23% Similarity=0.229 Sum_probs=56.4
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 001074 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (1163)
Q Consensus 176 L~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~ 255 (1163)
+...+|+|+|+|.+|..++++|...|+..|+++|.+. .|+..+++.+. . .+... +
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~-------------------~ra~~la~~~g----~-~~~~~-~ 230 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY-------------------ERAEELAKELG----G-NAVPL-D 230 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH-------------------HHHHHHHHHcC----C-eEEeH-H
Confidence 6789999999999999999999999999999998532 35544444432 1 11111 1
Q ss_pred CCChhhcCCCcEEEEecCChhHHHHHHHH
Q 001074 256 KLTKEQLSDFQAVVFTDISLDKAIEFDDF 284 (1163)
Q Consensus 256 ~l~~e~l~~fdvVI~~~~~~~~~~~ln~~ 284 (1163)
+ ..+.+.++|+||.|+.+......+...
T Consensus 231 ~-~~~~l~~aDvVi~at~~~~~~~~~~~~ 258 (311)
T cd05213 231 E-LLELLNEADVVISATGAPHYAKIVERA 258 (311)
T ss_pred H-HHHHHhcCCEEEECCCCCchHHHHHHH
Confidence 1 124567899999998765553333333
No 177
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.18 E-value=1.5 Score=42.46 Aligned_cols=87 Identities=23% Similarity=0.332 Sum_probs=59.5
Q ss_pred EEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecCCC-h
Q 001074 181 ILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLT-K 259 (1163)
Q Consensus 181 VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~l~-~ 259 (1163)
|+|+|+|.+|.++++.|...| ..++++|.+.- + .+.+.+.. +.+...+.+ +
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~-------------------~----~~~~~~~~----~~~i~gd~~~~ 52 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPE-------------------R----VEELREEG----VEVIYGDATDP 52 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHH-------------------H----HHHHHHTT----SEEEES-TTSH
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcH-------------------H----HHHHHhcc----cccccccchhh
Confidence 789999999999999999955 68999996542 1 23333333 234444443 2
Q ss_pred -----hhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeE
Q 001074 260 -----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFI 295 (1163)
Q Consensus 260 -----e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI 295 (1163)
..+.+++.||++.++......+...+++.++.++.|
T Consensus 53 ~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 53 EVLERAGIEKADAVVILTDDDEENLLIALLARELNPDIRII 93 (116)
T ss_dssp HHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEE
T ss_pred hHHhhcCccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEE
Confidence 246688999999888888888888899876544444
No 178
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=92.13 E-value=0.35 Score=58.28 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=33.5
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 001074 175 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 210 (1163)
Q Consensus 175 kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~ 210 (1163)
.+.+.+|+|+|+|.+|..+++.|...|+.+++++|.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r 212 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANR 212 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence 377899999999999999999999999999999875
No 179
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=91.85 E-value=0.13 Score=56.93 Aligned_cols=38 Identities=26% Similarity=0.479 Sum_probs=34.7
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCc--cEEEecCCc
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQG--KLTITDDDV 614 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g--~i~ivD~D~ 614 (1163)
.+++.+|+|+|+|+.|+.+++.|+..|+ . +|+|+|.+-
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~-----~~~~i~ivdr~g 61 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGA-----KPENIVVVDSKG 61 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCc-----CcceEEEEeCCC
Confidence 5788999999999999999999999999 6 899999763
No 180
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=91.83 E-value=0.42 Score=52.34 Aligned_cols=63 Identities=29% Similarity=0.462 Sum_probs=50.3
Q ss_pred hhcCeEEEE-cCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEee
Q 001074 176 LFASNILVS-GMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (1163)
Q Consensus 176 L~~s~VlIi-G~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~ 254 (1163)
+.+++|+++ |+||+|-+.+|.|...|++.+.|.|.. +| -.+..+|+++||.++|....
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~----En-----------------~~a~akL~ai~p~~~v~F~~ 61 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSE----EN-----------------PEAIAKLQAINPSVSVIFIK 61 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhh----hC-----------------HHHHHHHhccCCCceEEEEE
Confidence 457788888 599999999999999999888886631 11 23566899999999999988
Q ss_pred cCCCh
Q 001074 255 SKLTK 259 (1163)
Q Consensus 255 ~~l~~ 259 (1163)
.+++.
T Consensus 62 ~DVt~ 66 (261)
T KOG4169|consen 62 CDVTN 66 (261)
T ss_pred ecccc
Confidence 87753
No 181
>PLN00203 glutamyl-tRNA reductase
Probab=91.72 E-value=2.7 Score=52.05 Aligned_cols=35 Identities=23% Similarity=0.535 Sum_probs=31.1
Q ss_pred HhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 573 L~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
|.+++|+|||+|.+|..++++|+..|+ .+|++++.
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~-----~~V~V~nR 298 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGC-----TKMVVVNR 298 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCC-----CeEEEEeC
Confidence 556799999999999999999999998 78988753
No 182
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=91.70 E-value=0.43 Score=55.03 Aligned_cols=34 Identities=29% Similarity=0.582 Sum_probs=29.7
Q ss_pred CcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
+||.|||+|++|+.++..|+..|+. .+|+++|.+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~----~ei~l~D~~ 34 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIA----DELVLIDIN 34 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEeCC
Confidence 3899999999999999999999982 389999754
No 183
>PLN02602 lactate dehydrogenase
Probab=91.68 E-value=0.52 Score=55.50 Aligned_cols=73 Identities=14% Similarity=0.188 Sum_probs=51.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcC---CCEEEEee
Q 001074 179 SNILVSGMQGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNN---AVVLSTLT 254 (1163)
Q Consensus 179 s~VlIiG~gglGsEiaKNLvlaGV-g~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp---~V~V~~~~ 254 (1163)
.+|.|||+|.+|+.+|-.|+..|+ .++.|+|-. +.+++..+.-|+...+ .+.|...
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~-------------------~~~~~g~a~DL~~~~~~~~~~~i~~~- 97 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVN-------------------PDKLRGEMLDLQHAAAFLPRTKILAS- 97 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC-------------------CchhhHHHHHHHhhhhcCCCCEEEeC-
Confidence 699999999999999999999998 579999851 2244444445554433 3444431
Q ss_pred cCCChhhcCCCcEEEEecC
Q 001074 255 SKLTKEQLSDFQAVVFTDI 273 (1163)
Q Consensus 255 ~~l~~e~l~~fdvVI~~~~ 273 (1163)
-+.+.+++.|+||.|..
T Consensus 98 --~dy~~~~daDiVVitAG 114 (350)
T PLN02602 98 --TDYAVTAGSDLCIVTAG 114 (350)
T ss_pred --CCHHHhCCCCEEEECCC
Confidence 23456889999999865
No 184
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=91.67 E-value=1.2 Score=49.35 Aligned_cols=105 Identities=18% Similarity=0.210 Sum_probs=65.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecCC-
Q 001074 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL- 257 (1163)
Q Consensus 179 s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~l- 257 (1163)
.+++|+|+|-+|..+|++|...|- .++++|.+.- + +.+.++ ....+.++..+-
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~-------------------~---~~~~~~---~~~~~~~v~gd~t 54 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEE-------------------R---VEEFLA---DELDTHVVIGDAT 54 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHH-------------------H---HHHHhh---hhcceEEEEecCC
Confidence 379999999999999999999996 5667665321 1 111122 112233333222
Q ss_pred C-----hhhcCCCcEEEEecCChhHHHHHHHHHHh-cCCCceeEEeeecce-eEEEEEEcC
Q 001074 258 T-----KEQLSDFQAVVFTDISLDKAIEFDDFCHN-HQPAISFIKAEVRGL-FGSVFCDFG 311 (1163)
Q Consensus 258 ~-----~e~l~~fdvVI~~~~~~~~~~~ln~~cr~-~~~~IpfI~~~~~G~-~G~vf~d~g 311 (1163)
+ +.-+.++|++|.++.+-.....+-.+..+ .+ +|-+.+.+..- +..++...|
T Consensus 55 ~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~g--v~~viar~~~~~~~~~~~~~g 113 (225)
T COG0569 55 DEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFG--VPRVIARARNPEHEKVLEKLG 113 (225)
T ss_pred CHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcC--CCcEEEEecCHHHHHHHHHcC
Confidence 2 22367899999988876666666666655 78 78777666443 444444444
No 185
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.62 E-value=0.68 Score=53.60 Aligned_cols=73 Identities=14% Similarity=0.190 Sum_probs=51.7
Q ss_pred eEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCC---CEEEEeec
Q 001074 180 NILVSGMQGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNA---VVLSTLTS 255 (1163)
Q Consensus 180 ~VlIiG~gglGsEiaKNLvlaGV-g~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~---V~V~~~~~ 255 (1163)
+|.|||+|.+|+.+|-.|+..|+ +.+.|+|- -+.||+.-+.-|+...+. ..+.....
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di-------------------~~~~a~g~a~DL~~~~~~~~~~~~~i~~~ 61 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV-------------------NEGVAEGEALDFHHATALTYSTNTKIRAG 61 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CcchhhHHHHHHHhhhccCCCCCEEEEEC
Confidence 68999999999999999999998 57999984 123455555555554431 12333333
Q ss_pred CCChhhcCCCcEEEEecC
Q 001074 256 KLTKEQLSDFQAVVFTDI 273 (1163)
Q Consensus 256 ~l~~e~l~~fdvVI~~~~ 273 (1163)
+.+.+++.|+||.|..
T Consensus 62 --~y~~~~~aDivvitaG 77 (307)
T cd05290 62 --DYDDCADADIIVITAG 77 (307)
T ss_pred --CHHHhCCCCEEEECCC
Confidence 3567889999998865
No 186
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=91.61 E-value=0.34 Score=50.58 Aligned_cols=31 Identities=29% Similarity=0.535 Sum_probs=25.8
Q ss_pred CcEEEEecCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
.+|.+||+|..|+.++++|+..|. .+++.|.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~------~v~~~d~ 32 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY------EVTVYDR 32 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT------EEEEEES
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC------eEEeecc
Confidence 479999999999999999999998 7888763
No 187
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.35 E-value=0.61 Score=54.06 Aligned_cols=74 Identities=15% Similarity=0.168 Sum_probs=52.2
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCC---CEEEEe
Q 001074 178 ASNILVSGMQGLGAEIAKNLILAGVK-SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNA---VVLSTL 253 (1163)
Q Consensus 178 ~s~VlIiG~gglGsEiaKNLvlaGVg-~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~---V~V~~~ 253 (1163)
..||.|||+|.+|+.+|-.|+..|.. .+.|+|.. +.+++..+.-|+...|. ..|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~-------------------~~~~~g~a~Dl~~~~~~~~~~~v~~~ 63 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV-------------------EDKLKGEAMDLQHGSAFLKNPKIEAD 63 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHHHHHhhccCCCCEEEEC
Confidence 45899999999999999999999985 69999852 12455555555555432 234322
Q ss_pred ecCCChhhcCCCcEEEEecC
Q 001074 254 TSKLTKEQLSDFQAVVFTDI 273 (1163)
Q Consensus 254 ~~~l~~e~l~~fdvVI~~~~ 273 (1163)
. +.+.+.+.|+||.|..
T Consensus 64 -~--dy~~~~~adivvitaG 80 (312)
T cd05293 64 -K--DYSVTANSKVVIVTAG 80 (312)
T ss_pred -C--CHHHhCCCCEEEECCC
Confidence 2 3345899999998754
No 188
>PRK04148 hypothetical protein; Provisional
Probab=91.23 E-value=1.2 Score=45.20 Aligned_cols=91 Identities=12% Similarity=0.192 Sum_probs=67.1
Q ss_pred hcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEE
Q 001074 574 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 653 (1163)
Q Consensus 574 ~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~ 653 (1163)
++.++++||+| -|-.+++.|+.+|. .++.+|.+.- .++.+ ++. .+.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~------~ViaIDi~~~-------------------aV~~a----~~~----~~~ 61 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF------DVIVIDINEK-------------------AVEKA----KKL----GLN 61 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC------EEEEEECCHH-------------------HHHHH----HHh----CCe
Confidence 34689999999 99999999999997 8999985432 22222 221 133
Q ss_pred EEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEE
Q 001074 654 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLL 703 (1163)
Q Consensus 654 ~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI 703 (1163)
+....+..- +.++++++|+|...-=.++-...+-+.+.+.+.+++
T Consensus 62 ~v~dDlf~p-----~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~ 106 (134)
T PRK04148 62 AFVDDLFNP-----NLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLI 106 (134)
T ss_pred EEECcCCCC-----CHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEE
Confidence 444333321 246789999999998888999999999999999887
No 189
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=91.17 E-value=0.23 Score=57.75 Aligned_cols=90 Identities=21% Similarity=0.291 Sum_probs=61.0
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccc-cCcCcccCcccCcccchHHHHHHHHHHhhCCCC
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEK-SNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 650 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~-SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~ 650 (1163)
.|.+++|-|||+|.||..+++-|...|+ ++..+|.-.-.. ..-..- .....+.++-+..
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm------~v~~~d~~~~~~~~~~~~~--------------~~~~~Ld~lL~~s 198 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGM------KVIGYDPYSPRERAGVDGV--------------VGVDSLDELLAEA 198 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCC------eEEEECCCCchhhhccccc--------------eecccHHHHHhhC
Confidence 6889999999999999999999999999 888888632211 110000 0012233334456
Q ss_pred eEEEEeccCCcccccccchhhhccC---CEEEEc
Q 001074 651 NIEALQNRVGPETENVFDDTFWENI---TCVINA 681 (1163)
Q Consensus 651 ~I~~~~~~v~~~~e~~~~~~f~~~~---DvVi~a 681 (1163)
.|...+..++++|.++++.+.+... -++|||
T Consensus 199 Div~lh~PlT~eT~g~i~~~~~a~MK~gailIN~ 232 (324)
T COG0111 199 DILTLHLPLTPETRGLINAEELAKMKPGAILINA 232 (324)
T ss_pred CEEEEcCCCCcchhcccCHHHHhhCCCCeEEEEC
Confidence 7777777788888888777766544 277776
No 190
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=90.98 E-value=0.26 Score=54.51 Aligned_cols=38 Identities=26% Similarity=0.455 Sum_probs=35.4
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCC--eEEEEeCCc
Q 001074 175 RLFASNILVSGMQGLGAEIAKNLILAGVK--SVTLHDEGT 212 (1163)
Q Consensus 175 kL~~s~VlIiG~gglGsEiaKNLvlaGVg--~itLvD~d~ 212 (1163)
.+++.+|+|+|+||.|..|++.|+..|++ +|+|+|.+-
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 57889999999999999999999999999 999999863
No 191
>PRK08618 ornithine cyclodeaminase; Validated
Probab=90.93 E-value=0.72 Score=53.74 Aligned_cols=162 Identities=15% Similarity=0.076 Sum_probs=89.7
Q ss_pred cccCchhhHhhhhhhHHHHHhhcCC------cccc-e-eeeeeeccCCCCCCCCCCCCCCCccCchhhhhhhcCHHHHHH
Q 001074 501 AVLNPMAAMFGGIVGQEVVKACSGK------FHPL-Y-QFFYFDSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQKK 572 (1163)
Q Consensus 501 ~el~PvaA~iGGiaAQEVIKaiTgk------f~PI-~-q~~~fD~ie~Lp~~~~~~~~~~~~~~Rydrq~~l~G~~~q~k 572 (1163)
+.+..|.+.++|.- --.+|.++.- --|- + ..++||.-++.|..-++...+.. -|--. ....+.+...+
T Consensus 49 ~~~~~mp~~~~~~~-~~g~K~~~~~p~n~~~glp~~~g~i~l~d~~tG~p~a~~d~~~lT~--~RTaa-~sala~~~la~ 124 (325)
T PRK08618 49 NTSLIMPGYAEGLE-ALGLKIVSVVPENKKKGKPTIPGTVILSDFETGEVLAILDGTYLTQ--IRTGA-LSGVATKYLAR 124 (325)
T ss_pred CcEEEeeeecCCCC-eEEEEEEeecCCCcccCCCcceEEEEEEeCCCCceEEEEccchhhh--hhHHH-HHHHHHHHhcC
Confidence 45566666666421 1137876642 2232 1 47778887777753332222211 11111 11122233333
Q ss_pred HhcCcEEEEecCcchHHHHHHHH-HcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCe
Q 001074 573 LEDAKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (1163)
Q Consensus 573 L~~~kVlvVGaGglGce~lknLa-~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~ 651 (1163)
-..++++|||+|+.|-..+..++ ..|+ .++.|+|.+ ..|++.+++.+.... .++
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~-----~~v~v~~r~-------------------~~~a~~~~~~~~~~~-~~~ 179 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDI-----ERVRVYSRT-------------------FEKAYAFAQEIQSKF-NTE 179 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCc-----cEEEEECCC-------------------HHHHHHHHHHHHHhc-CCc
Confidence 45678999999999999998875 5687 889888644 336666676665433 233
Q ss_pred EEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEe
Q 001074 652 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLE 704 (1163)
Q Consensus 652 I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~ 704 (1163)
+..+.. . .+...+.|+|++|+-+.. ..+. .+++.++.++.
T Consensus 180 ~~~~~~-----~-----~~~~~~aDiVi~aT~s~~--p~i~-~~l~~G~hV~~ 219 (325)
T PRK08618 180 IYVVNS-----A-----DEAIEEADIIVTVTNAKT--PVFS-EKLKKGVHINA 219 (325)
T ss_pred EEEeCC-----H-----HHHHhcCCEEEEccCCCC--cchH-HhcCCCcEEEe
Confidence 333211 1 234578999999986542 2334 45455554443
No 192
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=90.80 E-value=0.22 Score=41.05 Aligned_cols=23 Identities=30% Similarity=0.647 Sum_probs=19.8
Q ss_pred hhcccchHHHHHHHHHHHHHHHH
Q 001074 805 KEKCEIFQDCITWARLKFEDYFS 827 (1163)
Q Consensus 805 ~~~~~~~~dci~~a~~~f~~~F~ 827 (1163)
+..|.+.+.||+||+.+|+.+|.
T Consensus 23 r~~P~~~~HcI~wAk~~f~~~F~ 45 (45)
T PF10585_consen 23 RNFPRTPEHCIEWAKDLFEELFG 45 (45)
T ss_dssp HTS-SSHHHHHHHHHHHHHHHHT
T ss_pred hcCCCCchHHHHHHHHHHHHHhC
Confidence 56799999999999999999983
No 193
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=90.78 E-value=0.52 Score=56.61 Aligned_cols=90 Identities=12% Similarity=0.090 Sum_probs=58.0
Q ss_pred HhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeE
Q 001074 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 652 (1163)
Q Consensus 573 L~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I 652 (1163)
+.+.+|+|+|+|.+|..+++.+..+|. +++++|.|.. |.+.|++ . ...+
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga------~ViV~d~d~~-------------------R~~~A~~----~--G~~~ 248 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA------RVIVTEVDPI-------------------CALQAAM----E--GYEV 248 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEECChh-------------------hHHHHHh----c--CCEE
Confidence 568899999999999999999999998 6888886643 2222221 1 1111
Q ss_pred EEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecC
Q 001074 653 EALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESG 706 (1163)
Q Consensus 653 ~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sg 706 (1163)
.. . ++.+..+|+||+|+.+..+-..-.-.+.+.+.-+++.|
T Consensus 249 ~~------------~-~e~v~~aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 249 MT------------M-EEAVKEGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred cc------------H-HHHHcCCCEEEECCCCHHHHHHHHHhcCCCCcEEEEeC
Confidence 10 0 12346789999999876643322123445556666666
No 194
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=90.72 E-value=0.57 Score=61.98 Aligned_cols=105 Identities=16% Similarity=0.231 Sum_probs=64.7
Q ss_pred HhcCcEEEEecCcchHHHHHHHHHccccc-----CCC---ccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHH
Q 001074 573 LEDAKVFIVGSGALGCEFLKNVALMGVSC-----GNQ---GKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAT 644 (1163)
Q Consensus 573 L~~~kVlvVGaGglGce~lknLa~~Gv~~-----~~~---g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~ 644 (1163)
-+.++|+|+|||.+|..+++.|+..+-.. +.+ -.++|.|.+ ..+++.+++.
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~-------------------~~~a~~la~~-- 625 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY-------------------LKDAKETVEG-- 625 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC-------------------HHHHHHHHHh--
Confidence 34679999999999999999999864210 000 125555543 2233333332
Q ss_pred hhCCCCeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecC
Q 001074 645 SINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESG 706 (1163)
Q Consensus 645 ~~np~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sg 706 (1163)
.|++ ++..-.+.+ .+.+ .++++++|+||+|+-. ..-..+...|.++++++++..
T Consensus 626 --~~~~--~~v~lDv~D-~e~L--~~~v~~~DaVIsalP~-~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 626 --IENA--EAVQLDVSD-SESL--LKYVSQVDVVISLLPA-SCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred --cCCC--ceEEeecCC-HHHH--HHhhcCCCEEEECCCc-hhhHHHHHHHHHcCCCEEECc
Confidence 2433 222222322 1222 2445789999999976 345678889999999998654
No 195
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=90.50 E-value=0.51 Score=49.42 Aligned_cols=91 Identities=21% Similarity=0.298 Sum_probs=54.7
Q ss_pred HHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCC
Q 001074 571 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 650 (1163)
Q Consensus 571 ~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~ 650 (1163)
-.|..++++|+|.|-+|.-+|+.|..+|. +++|+|-|.+ | +.++... ..
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga------~V~V~e~DPi-------------------~---alqA~~d---Gf 67 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGA------RVTVTEIDPI-------------------R---ALQAAMD---GF 67 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-------EEEEE-SSHH-------------------H---HHHHHHT---T-
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCC------EEEEEECChH-------------------H---HHHhhhc---Cc
Confidence 35778899999999999999999999998 9999999887 1 2233322 22
Q ss_pred eEEEEeccCCcccccccchhhhccCCEEEEccCchHH--HHHHHhhcccccccEEecCC
Q 001074 651 NIEALQNRVGPETENVFDDTFWENITCVINALDNVNA--RLYVDQRCLYFQKPLLESGT 707 (1163)
Q Consensus 651 ~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~a--R~~v~~~c~~~~~PlI~sgt 707 (1163)
++... ++-....|++|.|+.|... ..++.. .+.+.-+.+.|.
T Consensus 68 ~v~~~-------------~~a~~~adi~vtaTG~~~vi~~e~~~~--mkdgail~n~Gh 111 (162)
T PF00670_consen 68 EVMTL-------------EEALRDADIFVTATGNKDVITGEHFRQ--MKDGAILANAGH 111 (162)
T ss_dssp EEE-H-------------HHHTTT-SEEEE-SSSSSSB-HHHHHH--S-TTEEEEESSS
T ss_pred EecCH-------------HHHHhhCCEEEECCCCccccCHHHHHH--hcCCeEEeccCc
Confidence 33211 2345688999999988653 445544 344555555554
No 196
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.49 E-value=0.95 Score=52.65 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=32.0
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001074 177 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 211 (1163)
Q Consensus 177 ~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d 211 (1163)
.+.+|.|||+|.+|..++-.|++.|+..+.|+|-+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~ 38 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI 38 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence 46799999999999999999999998889999963
No 197
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=90.46 E-value=0.61 Score=53.97 Aligned_cols=76 Identities=24% Similarity=0.337 Sum_probs=52.8
Q ss_pred HhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeE
Q 001074 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 652 (1163)
Q Consensus 573 L~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I 652 (1163)
+.+.+|+|+|+|.+|..+++.|...|. .+++++|.+. .|+..+++.+ . . .+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~-----~~V~v~~r~~-------------------~ra~~la~~~---g-~-~~ 226 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGV-----AEITIANRTY-------------------ERAEELAKEL---G-G-NA 226 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCC-----CEEEEEeCCH-------------------HHHHHHHHHc---C-C-eE
Confidence 678999999999999999999999888 7899886542 2444444433 1 1 11
Q ss_pred EEEeccCCcccccccchhhhccCCEEEEccCchHH
Q 001074 653 EALQNRVGPETENVFDDTFWENITCVINALDNVNA 687 (1163)
Q Consensus 653 ~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~a 687 (1163)
... . .+ .+.+..+|+||.|+-....
T Consensus 227 ~~~----~----~~--~~~l~~aDvVi~at~~~~~ 251 (311)
T cd05213 227 VPL----D----EL--LELLNEADVVISATGAPHY 251 (311)
T ss_pred EeH----H----HH--HHHHhcCCEEEECCCCCch
Confidence 111 0 11 2345679999999998776
No 198
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=90.40 E-value=1 Score=48.27 Aligned_cols=78 Identities=17% Similarity=0.129 Sum_probs=52.0
Q ss_pred HhhcCeEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEe
Q 001074 175 RLFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 253 (1163)
Q Consensus 175 kL~~s~VlIiG~-gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~ 253 (1163)
.+++++|+|+|. |++|..+++.|+..| .++++++.+ ..|++.+.+.+.+.. .+.+...
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~~~~~~ 83 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD-------------------LERAQKAADSLRARF-GEGVGAV 83 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC-------------------HHHHHHHHHHHHhhc-CCcEEEe
Confidence 467899999996 999999999999988 489988643 236666666665332 2333322
Q ss_pred ec-CCC--hhhcCCCcEEEEecC
Q 001074 254 TS-KLT--KEQLSDFQAVVFTDI 273 (1163)
Q Consensus 254 ~~-~l~--~e~l~~fdvVI~~~~ 273 (1163)
.. +.. .+.+.++|+||.++.
T Consensus 84 ~~~~~~~~~~~~~~~diVi~at~ 106 (194)
T cd01078 84 ETSDDAARAAAIKGADVVFAAGA 106 (194)
T ss_pred eCCCHHHHHHHHhcCCEEEECCC
Confidence 11 111 145678888887764
No 199
>PRK07063 short chain dehydrogenase; Provisional
Probab=90.40 E-value=0.85 Score=50.50 Aligned_cols=64 Identities=20% Similarity=0.264 Sum_probs=44.6
Q ss_pred HHhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCC
Q 001074 572 KLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 650 (1163)
Q Consensus 572 kL~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~ 650 (1163)
++.+++++|.| .||||.++++.|+..|. +++++|.+ ..+.+.+++.+...++..
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~------~vv~~~r~-------------------~~~~~~~~~~~~~~~~~~ 58 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA------AVALADLD-------------------AALAERAAAAIARDVAGA 58 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCC-------------------HHHHHHHHHHHHhccCCc
Confidence 46788999998 68999999999999997 78877632 224444555555544455
Q ss_pred eEEEEeccCC
Q 001074 651 NIEALQNRVG 660 (1163)
Q Consensus 651 ~I~~~~~~v~ 660 (1163)
++..+...+.
T Consensus 59 ~~~~~~~Dl~ 68 (260)
T PRK07063 59 RVLAVPADVT 68 (260)
T ss_pred eEEEEEccCC
Confidence 5666655554
No 200
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.32 E-value=1.1 Score=51.43 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=30.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 001074 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTV 213 (1163)
Q Consensus 179 s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V 213 (1163)
++|.|||+|..|..+|.+++++|. .++++|.+.-
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHH
Confidence 489999999999999999999997 7999997543
No 201
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=90.30 E-value=0.52 Score=54.63 Aligned_cols=87 Identities=16% Similarity=0.208 Sum_probs=57.6
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCe
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~ 651 (1163)
.|.+++|.|||.|.||.++++.+...|+ ++..+|.-.-. + +.|-.. ..+.++.+...
T Consensus 142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm------~V~~~d~~~~~-----~-------~~~~~~-----~~l~ell~~sD 198 (311)
T PRK08410 142 EIKGKKWGIIGLGTIGKRVAKIAQAFGA------KVVYYSTSGKN-----K-------NEEYER-----VSLEELLKTSD 198 (311)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhcCC------EEEEECCCccc-----c-------ccCcee-----ecHHHHhhcCC
Confidence 6889999999999999999999988887 88888862110 0 111111 12334444556
Q ss_pred EEEEeccCCcccccccchhhhccCC---EEEEc
Q 001074 652 IEALQNRVGPETENVFDDTFWENIT---CVINA 681 (1163)
Q Consensus 652 I~~~~~~v~~~~e~~~~~~f~~~~D---vVi~a 681 (1163)
+...+...+++|.++++.+.++..- ++||+
T Consensus 199 vv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~ 231 (311)
T PRK08410 199 IISIHAPLNEKTKNLIAYKELKLLKDGAILINV 231 (311)
T ss_pred EEEEeCCCCchhhcccCHHHHHhCCCCeEEEEC
Confidence 7777777777777777777665432 55554
No 202
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.26 E-value=0.37 Score=55.05 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=30.8
Q ss_pred HHhcCcEEEEecCc-chHHHHHHHHHcccccCCCccEEEec
Q 001074 572 KLEDAKVFIVGSGA-LGCEFLKNVALMGVSCGNQGKLTITD 611 (1163)
Q Consensus 572 kL~~~kVlvVGaGg-lGce~lknLa~~Gv~~~~~g~i~ivD 611 (1163)
.+++++|+|+|+|+ +|..++..|...|. ++++++
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga------tVtv~~ 190 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA------TVTICH 190 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC------EEEEEe
Confidence 57889999999999 99999999999987 788875
No 203
>PRK06197 short chain dehydrogenase; Provisional
Probab=90.21 E-value=0.65 Score=53.05 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=30.9
Q ss_pred HHHhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 571 KKLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 571 ~kL~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
..+.+++|+|.| .||||.++++.|+..|. ++++++.+
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~------~vi~~~r~ 49 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGA------HVVLAVRN 49 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCC------EEEEEeCC
Confidence 456788999998 59999999999999997 77777653
No 204
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=90.17 E-value=0.52 Score=54.62 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=30.2
Q ss_pred HhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 573 L~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
+++++|.|||.|.||.++++.|...|+ +++.+|.
T Consensus 134 l~g~tvgIvG~G~IG~~vA~~l~afG~------~V~~~~~ 167 (312)
T PRK15469 134 REDFTIGILGAGVLGSKVAQSLQTWGF------PLRCWSR 167 (312)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEeC
Confidence 557899999999999999999999998 7777764
No 205
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=90.00 E-value=0.86 Score=52.39 Aligned_cols=112 Identities=19% Similarity=0.204 Sum_probs=67.8
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHh-cCCCEEEEeecC-C
Q 001074 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQEL-NNAVVLSTLTSK-L 257 (1163)
Q Consensus 180 ~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eL-Np~V~V~~~~~~-l 257 (1163)
+|.|||+|.+|..+|.+|+..|. +++++|.+.-....+.. .|-..+....+.++.. ++++-+...+.. .
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~~--------~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~ 72 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALAE--------EGATGADSLEELVAKLPAPRVVWLMVPAGEI 72 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHH--------CCCeecCCHHHHHhhcCCCCEEEEEecCCcH
Confidence 69999999999999999999996 68999876422222110 1111111122222222 355555555443 1
Q ss_pred Ch-------hhcCCCcEEEEec-CChhHHHHHHHHHHhcCCCceeEEeeecce
Q 001074 258 TK-------EQLSDFQAVVFTD-ISLDKAIEFDDFCHNHQPAISFIKAEVRGL 302 (1163)
Q Consensus 258 ~~-------e~l~~fdvVI~~~-~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~ 302 (1163)
.. ..+..-++||++. .++....++.+.+++.+ +.|+.+.+.|.
T Consensus 73 ~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g--~~~~dapvsG~ 123 (301)
T PRK09599 73 TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKG--IHFVDVGTSGG 123 (301)
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcC--CEEEeCCCCcC
Confidence 11 1233346677664 45566667888888888 88888776664
No 206
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=89.99 E-value=0.88 Score=48.69 Aligned_cols=82 Identities=15% Similarity=0.177 Sum_probs=52.8
Q ss_pred HHhcCcEEEEec-CcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCC
Q 001074 572 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 650 (1163)
Q Consensus 572 kL~~~kVlvVGa-GglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~ 650 (1163)
.+++++++|+|+ |++|..+++.|+..|. ++++++.+ ..|++.+++.+.+.. ..
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~------~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~ 78 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGA------RVVLVGRD-------------------LERAQKAADSLRARF-GE 78 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC------EEEEEcCC-------------------HHHHHHHHHHHHhhc-CC
Confidence 467889999996 9999999999999875 78887543 235555666554322 23
Q ss_pred eEEEEeccCCcccccccchhhhccCCEEEEccCc
Q 001074 651 NIEALQNRVGPETENVFDDTFWENITCVINALDN 684 (1163)
Q Consensus 651 ~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn 684 (1163)
.+.... ... .+.+ .+.+.++|+||+|+-.
T Consensus 79 ~~~~~~--~~~-~~~~--~~~~~~~diVi~at~~ 107 (194)
T cd01078 79 GVGAVE--TSD-DAAR--AAAIKGADVVFAAGAA 107 (194)
T ss_pred cEEEee--CCC-HHHH--HHHHhcCCEEEECCCC
Confidence 333221 111 1111 2456789999999853
No 207
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=89.96 E-value=0.67 Score=55.53 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=33.1
Q ss_pred HhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcc
Q 001074 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVI 615 (1163)
Q Consensus 573 L~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~I 615 (1163)
+.+++|+|+|+|.+|.-+++.+..+|. +++++|.|..
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga------~ViV~d~dp~ 229 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA------RVIVTEVDPI 229 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC------EEEEEeCChh
Confidence 678999999999999999999999998 7999986654
No 208
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=89.87 E-value=0.7 Score=53.67 Aligned_cols=34 Identities=32% Similarity=0.565 Sum_probs=30.0
Q ss_pred cCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 575 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 575 ~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
..||.|||||.+|+.++-.|+..|+. ..|.++|-
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~----~el~L~D~ 39 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIA----DELVIIDI 39 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEeC
Confidence 46999999999999999999999993 47999874
No 209
>PRK06487 glycerate dehydrogenase; Provisional
Probab=89.83 E-value=0.54 Score=54.65 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=31.3
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
.|.+++|.|||.|.||.++++.|...|+ ++..+|.
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm------~V~~~~~ 179 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGM------RVLIGQL 179 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCC------EEEEECC
Confidence 5889999999999999999999998887 7777764
No 210
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.81 E-value=1.6 Score=53.34 Aligned_cols=97 Identities=18% Similarity=0.129 Sum_probs=61.4
Q ss_pred HHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEe
Q 001074 174 RRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 253 (1163)
Q Consensus 174 ~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~ 253 (1163)
.-+.+++|+|+|+|+.|..+|+-|...|. .+++.|..... ......++|.+. .+.+.
T Consensus 10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~------------------~~~~~~~~l~~~--gi~~~-- 66 (458)
T PRK01710 10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKSEE------------------ELGEVSNELKEL--GVKLV-- 66 (458)
T ss_pred hhhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCCCc------------------cchHHHHHHHhC--CCEEE--
Confidence 44567899999999999999999999997 79998854311 000111234433 23332
Q ss_pred ecCCChhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEE
Q 001074 254 TSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIK 296 (1163)
Q Consensus 254 ~~~l~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~ 296 (1163)
.....++.+.++|+||.+.. ......+-..+++.+ ||++.
T Consensus 67 ~~~~~~~~~~~~dlVV~Spg-i~~~~p~~~~a~~~~--i~i~s 106 (458)
T PRK01710 67 LGENYLDKLDGFDVIFKTPS-MRIDSPELVKAKEEG--AYITS 106 (458)
T ss_pred eCCCChHHhccCCEEEECCC-CCCCchHHHHHHHcC--CcEEe
Confidence 23223456788999998753 111223445567888 88874
No 211
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.79 E-value=1.2 Score=54.56 Aligned_cols=95 Identities=19% Similarity=0.221 Sum_probs=61.3
Q ss_pred HHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEE
Q 001074 171 ETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVL 250 (1163)
Q Consensus 171 e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V 250 (1163)
++...++.++|+|+|+|+.|..+|+.|...|. .+++.|.+. .+. .+.+.++ .+++
T Consensus 8 ~~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~-------------------~~~---~~~l~~~--gi~~ 62 (473)
T PRK00141 8 SALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDNE-------------------TAR---HKLIEVT--GVAD 62 (473)
T ss_pred hhcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCh-------------------HHH---HHHHHhc--CcEE
Confidence 44455677899999999999999999999998 899988531 011 1112221 3333
Q ss_pred EEeecCCChhhcCCCcEEEEecC-ChhHHHHHHHHHHhcCCCceeEE
Q 001074 251 STLTSKLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIK 296 (1163)
Q Consensus 251 ~~~~~~l~~e~l~~fdvVI~~~~-~~~~~~~ln~~cr~~~~~IpfI~ 296 (1163)
....-.++.+.++|+||.+.. +... ..-..+++++ +|++.
T Consensus 63 --~~~~~~~~~~~~~d~vV~Spgi~~~~--p~~~~a~~~g--i~v~~ 103 (473)
T PRK00141 63 --ISTAEASDQLDSFSLVVTSPGWRPDS--PLLVDAQSQG--LEVIG 103 (473)
T ss_pred --EeCCCchhHhcCCCEEEeCCCCCCCC--HHHHHHHHCC--Cceee
Confidence 333333456778999998754 2221 2233567888 88874
No 212
>PRK13243 glyoxylate reductase; Reviewed
Probab=89.76 E-value=0.49 Score=55.34 Aligned_cols=35 Identities=14% Similarity=0.287 Sum_probs=31.8
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
.|.+++|.|||.|.||.++++.|...|+ ++..+|.
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~------~V~~~d~ 181 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARRAKGFGM------RILYYSR 181 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC------EEEEECC
Confidence 5789999999999999999999999987 7888875
No 213
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=89.74 E-value=1.7 Score=47.09 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=32.1
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001074 175 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 211 (1163)
Q Consensus 175 kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d 211 (1163)
.|++++|+|+|+|.+|..+|++|...|. +++++|.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 4788999999999999999999999997 77788754
No 214
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.60 E-value=1.5 Score=53.77 Aligned_cols=93 Identities=20% Similarity=0.134 Sum_probs=59.5
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 001074 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (1163)
Q Consensus 176 L~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~ 255 (1163)
+...+|+|+|+|++|.++|..|...|. +++++|.... ..+....+.|++. .+++..-.
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~------------------~~~~~~~~~l~~~--gv~~~~~~- 71 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDD------------------ERHRALAAILEAL--GATVRLGP- 71 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch------------------hhhHHHHHHHHHc--CCEEEECC-
Confidence 467799999999999999999999997 6999986421 1223334455554 34443211
Q ss_pred CCChhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeE
Q 001074 256 KLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFI 295 (1163)
Q Consensus 256 ~l~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI 295 (1163)
... ....+|+||.+..-... ..+-..+++.+ +|++
T Consensus 72 ~~~--~~~~~D~Vv~s~Gi~~~-~~~~~~a~~~g--i~v~ 106 (480)
T PRK01438 72 GPT--LPEDTDLVVTSPGWRPD-APLLAAAADAG--IPVW 106 (480)
T ss_pred Ccc--ccCCCCEEEECCCcCCC-CHHHHHHHHCC--Ceec
Confidence 111 34568999987652221 22334567888 8886
No 215
>PRK07574 formate dehydrogenase; Provisional
Probab=89.56 E-value=0.41 Score=57.05 Aligned_cols=35 Identities=40% Similarity=0.564 Sum_probs=32.0
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
.|.+++|.|||.|.||.++++.|...|+ +++.+|.
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~------~V~~~dr 223 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDV------KLHYTDR 223 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEECC
Confidence 5889999999999999999999999998 8888874
No 216
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=89.52 E-value=2.1 Score=40.16 Aligned_cols=78 Identities=15% Similarity=0.294 Sum_probs=48.4
Q ss_pred eEEEEcCChHHHHHHHHHHHhCC--CeEEEE-eCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 001074 180 NILVSGMQGLGAEIAKNLILAGV--KSVTLH-DEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (1163)
Q Consensus 180 ~VlIiG~gglGsEiaKNLvlaGV--g~itLv-D~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~ 256 (1163)
+|.|||+|.+|..+++.|+..|+ .++.++ +.+ ..|+ +++.+..+ +.+.. .+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~-------------------~~~~----~~~~~~~~-~~~~~--~~ 54 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS-------------------PEKA----AELAKEYG-VQATA--DD 54 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS-------------------HHHH----HHHHHHCT-TEEES--EE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc-------------------HHHH----HHHHHhhc-ccccc--CC
Confidence 68999999999999999999994 344433 321 1132 33333333 22221 11
Q ss_pred CChhhcCCCcEEEEecCChhHHHHHHHH
Q 001074 257 LTKEQLSDFQAVVFTDISLDKAIEFDDF 284 (1163)
Q Consensus 257 l~~e~l~~fdvVI~~~~~~~~~~~ln~~ 284 (1163)
..+.++..|+||+|..+......+.++
T Consensus 55 -~~~~~~~advvilav~p~~~~~v~~~i 81 (96)
T PF03807_consen 55 -NEEAAQEADVVILAVKPQQLPEVLSEI 81 (96)
T ss_dssp -HHHHHHHTSEEEE-S-GGGHHHHHHHH
T ss_pred -hHHhhccCCEEEEEECHHHHHHHHHHH
Confidence 245667899999999877766666666
No 217
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.47 E-value=0.79 Score=53.05 Aligned_cols=32 Identities=22% Similarity=0.535 Sum_probs=28.8
Q ss_pred cEEEEecCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 577 kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
||.|||+|.+|+.++-.|+..|++ +.|.|+|-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~----~elvL~Di 32 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLF----SEIVLIDV 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCC----CEEEEEeC
Confidence 689999999999999999999994 68999973
No 218
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=89.46 E-value=1.2 Score=51.82 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=31.5
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 001074 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 210 (1163)
Q Consensus 176 L~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~ 210 (1163)
++..+|.|||+|.+|+.+|-.++..|+..+.|+|-
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi 38 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDI 38 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeC
Confidence 34579999999999999999999999867999996
No 219
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=89.46 E-value=1 Score=51.05 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=29.2
Q ss_pred HhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 573 L~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
..+++++|+|+||+|..++..|+..|. +++++|.
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~------~v~v~~R 148 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADC------NVIIANR 148 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCC------EEEEEeC
Confidence 356789999999999999999999886 7888753
No 220
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.44 E-value=1.8 Score=49.12 Aligned_cols=33 Identities=30% Similarity=0.350 Sum_probs=29.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001074 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (1163)
Q Consensus 179 s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~ 212 (1163)
.+|.|||+|-+|..+|..|+.+|. .++++|.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCH
Confidence 579999999999999999999998 899998643
No 221
>PRK06932 glycerate dehydrogenase; Provisional
Probab=89.41 E-value=0.44 Score=55.31 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=30.9
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
.|.+++|.|||.|.||.++++.+...|+ +++.+|.
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~------~V~~~~~ 178 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGM------KVLYAEH 178 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCC------EEEEECC
Confidence 5889999999999999999999998887 6777653
No 222
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=89.40 E-value=1.9 Score=49.30 Aligned_cols=33 Identities=30% Similarity=0.464 Sum_probs=29.9
Q ss_pred CcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCc
Q 001074 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~ 614 (1163)
++|.|||+|.+|+.++..|+..|. .++++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~------~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM------DVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC------eEEEEeCCH
Confidence 579999999999999999999997 899998654
No 223
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.26 E-value=1 Score=51.44 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=30.0
Q ss_pred cCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 575 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 575 ~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
-++|.|||+|.+|..++.+|+..|. .++++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~------~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY------DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC------eEEEEeCC
Confidence 3689999999999999999999998 89999865
No 224
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=89.26 E-value=0.52 Score=56.89 Aligned_cols=74 Identities=24% Similarity=0.325 Sum_probs=51.3
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 001074 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (1163)
Q Consensus 176 L~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~ 255 (1163)
+.+.+|+|+|+|++|..+++.|...|+..+++++.+. .|+...++.+. . .+... .
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~-------------------~ra~~la~~~g----~-~~~~~-~ 234 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL-------------------ERAEELAEEFG----G-EAIPL-D 234 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH-------------------HHHHHHHHHcC----C-cEeeH-H
Confidence 6789999999999999999999999999999987532 24444433331 1 11111 1
Q ss_pred CCChhhcCCCcEEEEecCCh
Q 001074 256 KLTKEQLSDFQAVVFTDISL 275 (1163)
Q Consensus 256 ~l~~e~l~~fdvVI~~~~~~ 275 (1163)
++ .+.+.++|+||.|+...
T Consensus 235 ~~-~~~l~~aDvVI~aT~s~ 253 (423)
T PRK00045 235 EL-PEALAEADIVISSTGAP 253 (423)
T ss_pred HH-HHHhccCCEEEECCCCC
Confidence 11 24567899999998643
No 225
>PRK05854 short chain dehydrogenase; Provisional
Probab=89.23 E-value=0.99 Score=52.03 Aligned_cols=36 Identities=19% Similarity=0.420 Sum_probs=29.7
Q ss_pred HHhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 572 KLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 572 kL~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
.+++++++|.| .||||.++++.|+..|. ++++++.+
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~------~Vil~~R~ 47 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA------EVILPVRN 47 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEEeCC
Confidence 35677888888 78899999999999997 78877643
No 226
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.96 E-value=1.3 Score=51.03 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=30.0
Q ss_pred CcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCc
Q 001074 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~ 614 (1163)
.+|.|||+|.+|+.++.+|+..|. +++++|.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~------~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH------EVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC------eeEEEeCCH
Confidence 379999999999999999999998 899998764
No 227
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=88.96 E-value=1.3 Score=51.65 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=55.7
Q ss_pred cCeEEEEcCChHHHHHHHHHH-HhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 001074 178 ASNILVSGMQGLGAEIAKNLI-LAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (1163)
Q Consensus 178 ~s~VlIiG~gglGsEiaKNLv-laGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~ 256 (1163)
.++|+|+|+|+.|...++.|. ..|+.+++|++.+ ..|+++.++++++..+ +++.... +
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~-------------------~~~a~~~a~~~~~~~g-~~v~~~~-~ 187 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARD-------------------SAKAEALALQLSSLLG-IDVTAAT-D 187 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCC-------------------HHHHHHHHHHHHhhcC-ceEEEeC-C
Confidence 468999999999999999997 5789999998742 2478888888865433 3443322 1
Q ss_pred CChhhcCCCcEEEEecCC
Q 001074 257 LTKEQLSDFQAVVFTDIS 274 (1163)
Q Consensus 257 l~~e~l~~fdvVI~~~~~ 274 (1163)
-++.+.++|+||.|+.+
T Consensus 188 -~~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 188 -PRAAMSGADIIVTTTPS 204 (326)
T ss_pred -HHHHhccCCEEEEecCC
Confidence 23567899999998865
No 228
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=88.94 E-value=0.75 Score=54.65 Aligned_cols=88 Identities=20% Similarity=0.315 Sum_probs=57.3
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCe
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~ 651 (1163)
.|.+++|.|||+|.||..+++.|...|+ ++..+|+-.-+. .+.+. ...+.++-+...
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~------~V~~~dp~~~~~-----------~~~~~------~~~L~ell~~sD 169 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGI------KTLLCDPPRADR-----------GDEGD------FRSLDELVQEAD 169 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCC------EEEEECCccccc-----------ccccc------cCCHHHHHhhCC
Confidence 5789999999999999999999999998 888888532110 00000 011222333456
Q ss_pred EEEEeccCCcc----cccccchhhhccC---CEEEEcc
Q 001074 652 IEALQNRVGPE----TENVFDDTFWENI---TCVINAL 682 (1163)
Q Consensus 652 I~~~~~~v~~~----~e~~~~~~f~~~~---DvVi~al 682 (1163)
|...+.-++++ |.++++.++++.. -++||+-
T Consensus 170 iI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~a 207 (378)
T PRK15438 170 ILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINAC 207 (378)
T ss_pred EEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECC
Confidence 66666666664 6777777776544 3677663
No 229
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=88.87 E-value=0.67 Score=48.93 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=31.5
Q ss_pred HhhcCeEEEEcCChH-HHHHHHHHHHhCCCeEEEEeC
Q 001074 175 RLFASNILVSGMQGL-GAEIAKNLILAGVKSVTLHDE 210 (1163)
Q Consensus 175 kL~~s~VlIiG~ggl-GsEiaKNLvlaGVg~itLvD~ 210 (1163)
.|.+++|+|+|.|.+ |..+|++|...|+ ++++++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 578999999999985 8889999999999 6998884
No 230
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=88.75 E-value=1.1 Score=45.95 Aligned_cols=74 Identities=19% Similarity=0.274 Sum_probs=49.1
Q ss_pred CcEEEEec-CcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCC--eE
Q 001074 576 AKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL--NI 652 (1163)
Q Consensus 576 ~kVlvVGa-GglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~--~I 652 (1163)
.||.|||+ |.+|..++-.|++.|++ .+|.++|.+ ..|++.-+.-+....+.. ++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~----~ei~L~D~~-------------------~~~~~g~a~Dl~~~~~~~~~~~ 57 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLA----DEIVLIDIN-------------------EDKAEGEALDLSHASAPLPSPV 57 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTS----SEEEEEESS-------------------HHHHHHHHHHHHHHHHGSTEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC----CceEEeccC-------------------cccceeeehhhhhhhhhccccc
Confidence 38999999 99999999999999994 459998743 225555555555443222 33
Q ss_pred EEEeccCCcccccccchhhhccCCEEEEcc
Q 001074 653 EALQNRVGPETENVFDDTFWENITCVINAL 682 (1163)
Q Consensus 653 ~~~~~~v~~~~e~~~~~~f~~~~DvVi~al 682 (1163)
.... +. .+-+++.|+||.+.
T Consensus 58 ~i~~---~~-------~~~~~~aDivvita 77 (141)
T PF00056_consen 58 RITS---GD-------YEALKDADIVVITA 77 (141)
T ss_dssp EEEE---SS-------GGGGTTESEEEETT
T ss_pred cccc---cc-------ccccccccEEEEec
Confidence 3332 11 23357899998774
No 231
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=88.72 E-value=2.1 Score=52.84 Aligned_cols=165 Identities=13% Similarity=0.159 Sum_probs=82.3
Q ss_pred CcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEEEE
Q 001074 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 655 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~~~ 655 (1163)
.+|.|||+|.+|+.++.+|+..|. .++++|.+.=....+.+ ....+.+.+..+-. .....
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~------~V~v~D~~~~~~~~~~~------------~~~~~~~~~~~l~~-~~~~~- 64 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI------DVAVFDPHPEAERIIGE------------VLANAERAYAMLTD-APLPP- 64 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC------eEEEEeCCHHHHHHHHH------------HHHHHHHHHhhhcc-chhhh-
Confidence 479999999999999999999998 89999875322211100 00000011110000 00000
Q ss_pred eccCCcccccccchhhhccCCEEEEccCch-HHHHH----HHhhcccccccEEecCCCCcccc-eEEEeCCcccccCCCC
Q 001074 656 QNRVGPETENVFDDTFWENITCVINALDNV-NARLY----VDQRCLYFQKPLLESGTLGAKCN-TQMVIPHLTENYGASR 729 (1163)
Q Consensus 656 ~~~v~~~~e~~~~~~f~~~~DvVi~alDn~-~aR~~----v~~~c~~~~~PlI~sgt~G~~G~-v~viip~~t~~y~~~~ 729 (1163)
..++... .+ + .+..+++|+|+.|+-.. +.+.- +...|. ...+|.+.|.|..-. .+-..+....++...+
T Consensus 65 ~g~i~~~-~~-~-~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~--~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP 139 (495)
T PRK07531 65 EGRLTFC-AS-L-AEAVAGADWIQESVPERLDLKRRVLAEIDAAAR--PDALIGSSTSGFLPSDLQEGMTHPERLFVAHP 139 (495)
T ss_pred hhceEee-CC-H-HHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCC--CCcEEEEcCCCCCHHHHHhhcCCcceEEEEec
Confidence 0001100 00 0 23468899999988644 33432 232221 223788888875321 1111122122232221
Q ss_pred -CCCCCCCCCccccCCCCChhhHHHHHHHHhhhhccCCh
Q 001074 730 -DPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTP 767 (1163)
Q Consensus 730 -dp~~~~~p~Ct~~~fP~~~~Hci~wAr~~F~~lF~~~~ 767 (1163)
.|+ ...|+--+-.-|..-+..+++++.+|+.+ ++.+
T Consensus 140 ~nP~-~~~~Lvevv~g~~t~~e~~~~~~~~~~~l-G~~~ 176 (495)
T PRK07531 140 YNPV-YLLPLVELVGGGKTSPETIRRAKEILREI-GMKP 176 (495)
T ss_pred CCCc-ccCceEEEcCCCCCCHHHHHHHHHHHHHc-CCEE
Confidence 233 23344445555666678889999988754 4433
No 232
>PLN03139 formate dehydrogenase; Provisional
Probab=88.62 E-value=0.49 Score=56.38 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=32.2
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
.|.+++|.|||+|.||..+++.|...|+ +++.+|..
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG~------~V~~~d~~ 231 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFNC------NLLYHDRL 231 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCCC------EEEEECCC
Confidence 5889999999999999999999999998 78888753
No 233
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.58 E-value=2.5 Score=48.62 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=28.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001074 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 211 (1163)
Q Consensus 179 s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d 211 (1163)
++|.|||+|.+|+.+|..|+.+|. .++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 479999999999999999999997 78999854
No 234
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=88.58 E-value=0.77 Score=48.91 Aligned_cols=33 Identities=33% Similarity=0.381 Sum_probs=28.0
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 001074 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTV 213 (1163)
Q Consensus 180 ~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V 213 (1163)
+|.|+|+|..|.-||-.++++|. .++|+|.+.-
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChH
Confidence 69999999999999999999997 8999997543
No 235
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=88.56 E-value=2 Score=39.15 Aligned_cols=54 Identities=22% Similarity=0.252 Sum_probs=39.7
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhc
Q 001074 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN 245 (1163)
Q Consensus 180 ~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLN 245 (1163)
||+|+|.|.+|+|+|..|...|. ++||++...- +. ...+..-++.+.++|++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~---------~~--~~~~~~~~~~~~~~l~~~g 54 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR---------LL--PGFDPDAAKILEEYLRKRG 54 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS---------SS--TTSSHHHHHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch---------hh--hhcCHHHHHHHHHHHHHCC
Confidence 68999999999999999999996 8999886432 11 1233444566677777763
No 236
>PRK06436 glycerate dehydrogenase; Provisional
Probab=88.33 E-value=0.53 Score=54.34 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=32.1
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
.|.+++|.|||.|.||.++++.|...|+ +++.+|..
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~------~V~~~~r~ 154 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGM------NIYAYTRS 154 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC------EEEEECCC
Confidence 5889999999999999999998888887 88888864
No 237
>PRK06197 short chain dehydrogenase; Provisional
Probab=88.30 E-value=1.5 Score=50.10 Aligned_cols=42 Identities=26% Similarity=0.316 Sum_probs=33.0
Q ss_pred cCHHHHHHhhcCeEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 001074 168 YGRETMRRLFASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDE 210 (1163)
Q Consensus 168 ~G~e~q~kL~~s~VlIiG-~gglGsEiaKNLvlaGVg~itLvD~ 210 (1163)
|+...+..+.+++|+|.| .||+|.++|+.|+..|. ++.+++.
T Consensus 6 ~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r 48 (306)
T PRK06197 6 WTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR 48 (306)
T ss_pred CCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 444445567788999998 58999999999999997 6777654
No 238
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=88.24 E-value=1.5 Score=49.64 Aligned_cols=72 Identities=14% Similarity=0.242 Sum_probs=47.9
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 001074 177 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (1163)
Q Consensus 177 ~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~ 256 (1163)
.+++|+|+|+||+|..++..|...|. +++++|.+ ..|++..++.+.... .+. .. .
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~-------------------~~~~~~la~~~~~~~-~~~--~~--~ 170 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIANRT-------------------VSKAEELAERFQRYG-EIQ--AF--S 170 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHhhcC-ceE--Ee--c
Confidence 46789999999999999999999996 89998742 236666666654432 111 11 1
Q ss_pred CChhhcCCCcEEEEecC
Q 001074 257 LTKEQLSDFQAVVFTDI 273 (1163)
Q Consensus 257 l~~e~l~~fdvVI~~~~ 273 (1163)
+++..+.++|+||.|+.
T Consensus 171 ~~~~~~~~~DivInatp 187 (270)
T TIGR00507 171 MDELPLHRVDLIINATS 187 (270)
T ss_pred hhhhcccCccEEEECCC
Confidence 22222346788877763
No 239
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.13 E-value=0.87 Score=53.01 Aligned_cols=109 Identities=12% Similarity=0.091 Sum_probs=62.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCC-----CEEEEe
Q 001074 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNA-----VVLSTL 253 (1163)
Q Consensus 179 s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~-----V~V~~~ 253 (1163)
++|.|||+|-+|+.+|.+++.+|. .++++|.+.-..+. .+.+.....+.+.+..+. -.++..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 74 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAA------------LRANVANAWPALERQGLAPGASPARLRFV 74 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHH------------HHHHHHHHHHHHHHcCCChhhHHhhceec
Confidence 579999999999999999999997 89999975421111 112222233333332211 011111
Q ss_pred ecCCChhhcCCCcEEEEecC-ChhHHHHHHHHHHhcCCCceeEEeeecce
Q 001074 254 TSKLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRGL 302 (1163)
Q Consensus 254 ~~~l~~e~l~~fdvVI~~~~-~~~~~~~ln~~cr~~~~~IpfI~~~~~G~ 302 (1163)
. ++ ++.+.+.|+|+-+.. +.+.+..+-+-..+.-++=.+|.+.+.|+
T Consensus 75 ~-~l-~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l 122 (321)
T PRK07066 75 A-TI-EACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGL 122 (321)
T ss_pred C-CH-HHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCcc
Confidence 1 11 246789999998864 55544433332222222224777777765
No 240
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=87.95 E-value=1.1 Score=52.27 Aligned_cols=76 Identities=13% Similarity=0.167 Sum_probs=50.5
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhCC-C-----eEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhc-CCCE-
Q 001074 179 SNILVSGM-QGLGAEIAKNLILAGV-K-----SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN-NAVV- 249 (1163)
Q Consensus 179 s~VlIiG~-gglGsEiaKNLvlaGV-g-----~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLN-p~V~- 249 (1163)
.+|.|||+ |.+|+.+|-.|+..|+ + ++.|+|-.. .+.|++..+.-|.... |...
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~-----------------~~~~a~g~a~Dl~~~~~~~~~~ 66 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPP-----------------AMKALEGVAMELEDCAFPLLAG 66 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCC-----------------cccccchHHHHHhhccccccCC
Confidence 48999998 9999999999999997 4 688888421 1223444444555444 3322
Q ss_pred EEEeecCCChhhcCCCcEEEEecC
Q 001074 250 LSTLTSKLTKEQLSDFQAVVFTDI 273 (1163)
Q Consensus 250 V~~~~~~l~~e~l~~fdvVI~~~~ 273 (1163)
++... =+.+.+.+.|+||.|..
T Consensus 67 ~~i~~--~~~~~~~daDvVVitAG 88 (323)
T TIGR01759 67 VVATT--DPEEAFKDVDAALLVGA 88 (323)
T ss_pred cEEec--ChHHHhCCCCEEEEeCC
Confidence 22211 13467889999998865
No 241
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.90 E-value=1.3 Score=51.12 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=29.8
Q ss_pred cCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 575 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 575 ~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
..+|.|+|+|.+|+.+++.|+..|. .++++|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~------~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH------RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 4689999999999999999999997 78888865
No 242
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=87.85 E-value=1.8 Score=53.15 Aligned_cols=86 Identities=17% Similarity=0.291 Sum_probs=67.1
Q ss_pred HHHHHhcCcEEEEec-CcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhC
Q 001074 569 LQKKLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSIN 647 (1163)
Q Consensus 569 ~q~kL~~~kVlvVGa-GglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~n 647 (1163)
...-+.+++|+|-|+ |.+|+|+++.++..+. .+|.+.|.|.- |-......++...
T Consensus 244 i~~~~~gK~vLVTGagGSiGsel~~qil~~~p-----~~i~l~~~~E~-------------------~~~~i~~el~~~~ 299 (588)
T COG1086 244 IGAMLTGKTVLVTGGGGSIGSELCRQILKFNP-----KEIILFSRDEY-------------------KLYLIDMELREKF 299 (588)
T ss_pred HHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCC-----CEEEEecCchH-------------------HHHHHHHHHHhhC
Confidence 467789999999986 5599999999999999 89999876653 5556778888888
Q ss_pred CCCeEEEEeccCCcccccccchhhhcc--CCEEEEc
Q 001074 648 PRLNIEALQNRVGPETENVFDDTFWEN--ITCVINA 681 (1163)
Q Consensus 648 p~~~I~~~~~~v~~~~e~~~~~~f~~~--~DvVi~a 681 (1163)
|..++..+-..+.+. +.+ ...+++ .|+|+-|
T Consensus 300 ~~~~~~~~igdVrD~-~~~--~~~~~~~kvd~VfHA 332 (588)
T COG1086 300 PELKLRFYIGDVRDR-DRV--ERAMEGHKVDIVFHA 332 (588)
T ss_pred CCcceEEEecccccH-HHH--HHHHhcCCCceEEEh
Confidence 988999988888742 222 234555 8888876
No 243
>PRK09242 tropinone reductase; Provisional
Probab=87.82 E-value=1.8 Score=47.90 Aligned_cols=65 Identities=17% Similarity=0.291 Sum_probs=46.9
Q ss_pred HHhcCcEEEEec-CcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCC
Q 001074 572 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 650 (1163)
Q Consensus 572 kL~~~kVlvVGa-GglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~ 650 (1163)
++++++++|+|+ |+||.++++.|+..|. ++++++.+. .+.+.+.+.+...+|+.
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~------~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~ 60 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA------DVLIVARDA-------------------DALAQARDELAEEFPER 60 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEeCCH-------------------HHHHHHHHHHHhhCCCC
Confidence 467889999984 8999999999999997 788876431 23444555666666667
Q ss_pred eEEEEeccCCc
Q 001074 651 NIEALQNRVGP 661 (1163)
Q Consensus 651 ~I~~~~~~v~~ 661 (1163)
++..+...+..
T Consensus 61 ~~~~~~~Dl~~ 71 (257)
T PRK09242 61 EVHGLAADVSD 71 (257)
T ss_pred eEEEEECCCCC
Confidence 77777666653
No 244
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=87.75 E-value=1.4 Score=49.72 Aligned_cols=90 Identities=21% Similarity=0.258 Sum_probs=0.0
Q ss_pred cEEEEec-CcchHHHHHHHHHc-ccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEEE
Q 001074 577 KVFIVGS-GALGCEFLKNVALM-GVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 654 (1163)
Q Consensus 577 kVlvVGa-GglGce~lknLa~~-Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~~ 654 (1163)
||.|+|| |.+|..+++.+... ++ --..++|.+.-...-. ....+..
T Consensus 3 kV~IiG~~G~mG~~i~~~l~~~~~~-----elvav~d~~~~~~~~~---------------------------~~~~i~~ 50 (257)
T PRK00048 3 KVAVAGASGRMGRELIEAVEAAEDL-----ELVAAVDRPGSPLVGQ---------------------------GALGVAI 50 (257)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCC-----EEEEEEecCCcccccc---------------------------CCCCccc
Q ss_pred EeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCc
Q 001074 655 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGA 710 (1163)
Q Consensus 655 ~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~ 710 (1163)
+..- ++.+..+|+||+++ .+.+-..+-..|.++++|++ .||.|+
T Consensus 51 ~~dl----------~~ll~~~DvVid~t-~p~~~~~~~~~al~~G~~vv-igttG~ 94 (257)
T PRK00048 51 TDDL----------EAVLADADVLIDFT-TPEATLENLEFALEHGKPLV-IGTTGF 94 (257)
T ss_pred cCCH----------HHhccCCCEEEECC-CHHHHHHHHHHHHHcCCCEE-EECCCC
No 245
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=87.64 E-value=0.72 Score=54.93 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=32.3
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
.|++++|.|||+|.||..+++.|...|+ ++.++|+
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~------~V~~~Dp 147 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGW------KVLVCDP 147 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCC------EEEEECC
Confidence 4788999999999999999999999998 8888886
No 246
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=87.63 E-value=2 Score=48.19 Aligned_cols=34 Identities=18% Similarity=0.410 Sum_probs=27.1
Q ss_pred CcEEEEecCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
.+|.|||+|.+|..+++.|...|. ....++++|.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~---~~~~v~v~~r 36 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGV---PAKDIIVSDP 36 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCC---CcceEEEEcC
Confidence 479999999999999999999984 1135667653
No 247
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=87.60 E-value=1.6 Score=45.25 Aligned_cols=96 Identities=18% Similarity=0.261 Sum_probs=57.2
Q ss_pred cEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcC--cccCcccCcccchHHHHHHHHHHhhCCCCeEEE
Q 001074 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLS--RQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 654 (1163)
Q Consensus 577 kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLn--RQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~~ 654 (1163)
||.|+|+|..|+.++..|+..|. ++++.+.|.=....|+ |+- ....|++++..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~------~V~l~~~~~~~~~~i~~~~~n-------------------~~~~~~~~l~~ 55 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH------EVTLWGRDEEQIEEINETRQN-------------------PKYLPGIKLPE 55 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE------EEEEETSCHHHHHHHHHHTSE-------------------TTTSTTSBEET
T ss_pred CEEEECcCHHHHHHHHHHHHcCC------EEEEEeccHHHHHHHHHhCCC-------------------CCCCCCcccCc
Confidence 69999999999999999999996 8898877652111111 110 01112222211
Q ss_pred EeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhccc--ccccEE
Q 001074 655 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLY--FQKPLL 703 (1163)
Q Consensus 655 ~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~--~~~PlI 703 (1163)
.-.++.+. .+.+++.|+|+-|+-...-|..+.+.... .+.++|
T Consensus 56 -~i~~t~dl-----~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii 100 (157)
T PF01210_consen 56 -NIKATTDL-----EEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIII 100 (157)
T ss_dssp -TEEEESSH-----HHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEE
T ss_pred -ccccccCH-----HHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEE
Confidence 00111111 24568999999999999888888877653 345555
No 248
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.51 E-value=2.3 Score=51.51 Aligned_cols=88 Identities=18% Similarity=0.161 Sum_probs=59.3
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 001074 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (1163)
Q Consensus 176 L~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~ 255 (1163)
+...+|+|+|+|.+|..+++.|...|. .++++|.+.= + .+.+++..+.+.+ ..+
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~-------------------~----~~~~~~~~~~~~~--i~g 282 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPE-------------------R----AEELAEELPNTLV--LHG 282 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHH-------------------H----HHHHHHHCCCCeE--EEC
Confidence 567899999999999999999999888 6888885431 1 2233333333332 222
Q ss_pred CC-C-----hhhcCCCcEEEEecCChhHHHHHHHHHHhcC
Q 001074 256 KL-T-----KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQ 289 (1163)
Q Consensus 256 ~l-~-----~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~ 289 (1163)
+. + +..+.+++.||++..+......+...|++.+
T Consensus 283 d~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~ 322 (453)
T PRK09496 283 DGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLG 322 (453)
T ss_pred CCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhC
Confidence 22 2 2245688998888776565666667788887
No 249
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=87.47 E-value=1.2 Score=43.97 Aligned_cols=37 Identities=11% Similarity=0.053 Sum_probs=28.9
Q ss_pred hhhccCCEEEEccCchHHHHHHHhhcccccccEEecCC
Q 001074 670 TFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGT 707 (1163)
Q Consensus 670 ~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt 707 (1163)
+-+.+.|+||.|+++-.++.+.... ...+.++|+.+.
T Consensus 62 ~~~~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s~ 98 (121)
T PF01118_consen 62 EELSDVDVVFLALPHGASKELAPKL-LKAGIKVIDLSG 98 (121)
T ss_dssp HHHTTESEEEE-SCHHHHHHHHHHH-HHTTSEEEESSS
T ss_pred hHhhcCCEEEecCchhHHHHHHHHH-hhCCcEEEeCCH
Confidence 4458999999999998888877766 778888887543
No 250
>PRK07831 short chain dehydrogenase; Provisional
Probab=87.44 E-value=2 Score=47.61 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=28.4
Q ss_pred HhcCcEEEEec-C-cchHHHHHHHHHcccccCCCccEEEecC
Q 001074 573 LEDAKVFIVGS-G-ALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 573 L~~~kVlvVGa-G-glGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
+.+++++|.|+ | |||..+++.|+..|. +++++|.
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~------~V~~~~~ 50 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGA------RVVISDI 50 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCC------EEEEEeC
Confidence 44688999996 6 899999999999998 5777653
No 251
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=87.40 E-value=1.7 Score=49.21 Aligned_cols=64 Identities=19% Similarity=0.328 Sum_probs=51.8
Q ss_pred HhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCe
Q 001074 573 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (1163)
Q Consensus 573 L~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~ 651 (1163)
...++++|-| .+|||-|+++.||+-|. ++++|-.+ +.|-+.+++.+.... .++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~------~liLvaR~-------------------~~kL~~la~~l~~~~-~v~ 57 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY------NLILVARR-------------------EDKLEALAKELEDKT-GVE 57 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCc-------------------HHHHHHHHHHHHHhh-Cce
Confidence 4567899999 79999999999999998 88887322 457788888888877 788
Q ss_pred EEEEeccCCcc
Q 001074 652 IEALQNRVGPE 662 (1163)
Q Consensus 652 I~~~~~~v~~~ 662 (1163)
++.+..++++.
T Consensus 58 v~vi~~DLs~~ 68 (265)
T COG0300 58 VEVIPADLSDP 68 (265)
T ss_pred EEEEECcCCCh
Confidence 88888777753
No 252
>PTZ00325 malate dehydrogenase; Provisional
Probab=87.37 E-value=1.2 Score=51.82 Aligned_cols=77 Identities=14% Similarity=0.136 Sum_probs=50.6
Q ss_pred hhcCeEEEEcC-ChHHHHHHHHHHHhCCC-eEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEe
Q 001074 176 LFASNILVSGM-QGLGAEIAKNLILAGVK-SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 253 (1163)
Q Consensus 176 L~~s~VlIiG~-gglGsEiaKNLvlaGVg-~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~ 253 (1163)
++-.+|.|+|+ |.+|+.+|-.|+..|.. .+.|+|-+.. +++ +.-|+..++.+.+...
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~-------------------~g~--a~Dl~~~~~~~~v~~~ 64 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGA-------------------PGV--AADLSHIDTPAKVTGY 64 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCC-------------------ccc--ccchhhcCcCceEEEe
Confidence 34559999999 99999999999877764 7999996211 111 1123333344555544
Q ss_pred ecCCC-hhhcCCCcEEEEecC
Q 001074 254 TSKLT-KEQLSDFQAVVFTDI 273 (1163)
Q Consensus 254 ~~~l~-~e~l~~fdvVI~~~~ 273 (1163)
...-+ .+.+.+.|+||.+..
T Consensus 65 td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 65 ADGELWEKALRGADLVLICAG 85 (321)
T ss_pred cCCCchHHHhCCCCEEEECCC
Confidence 33223 467889999998765
No 253
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.36 E-value=5.4 Score=45.55 Aligned_cols=33 Identities=33% Similarity=0.385 Sum_probs=29.9
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001074 178 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 211 (1163)
Q Consensus 178 ~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d 211 (1163)
-++|.|||+|..|..+|.+|+.+|. .++++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 4689999999999999999999997 79999864
No 254
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=87.21 E-value=2.8 Score=46.34 Aligned_cols=81 Identities=11% Similarity=0.130 Sum_probs=47.8
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEe
Q 001074 177 FASNILVSGMQGLGAEIAKNLILAGV---KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 253 (1163)
Q Consensus 177 ~~s~VlIiG~gglGsEiaKNLvlaGV---g~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~ 253 (1163)
+..+|.|||+|.+|..+++.|...|. ..+.+++... ..|++.+. +..+ +.+ .
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~------------------~~~~~~~~----~~~~-~~~--~ 57 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSN------------------VEKLDQLQ----ARYN-VST--T 57 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCC------------------HHHHHHHH----HHcC-cEE--e
Confidence 45789999999999999999998873 2344443210 12333222 2211 222 1
Q ss_pred ecCCChhhcCCCcEEEEecCChhHHHHHHHH
Q 001074 254 TSKLTKEQLSDFQAVVFTDISLDKAIEFDDF 284 (1163)
Q Consensus 254 ~~~l~~e~l~~fdvVI~~~~~~~~~~~ln~~ 284 (1163)
.+ ..+.+.+.|+||+|..+...+..+.++
T Consensus 58 -~~-~~~~~~~~DiViiavp~~~~~~v~~~l 86 (245)
T PRK07634 58 -TD-WKQHVTSVDTIVLAMPPSAHEELLAEL 86 (245)
T ss_pred -CC-hHHHHhcCCEEEEecCHHHHHHHHHHH
Confidence 12 234567899999998765444444443
No 255
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=87.21 E-value=2.4 Score=52.83 Aligned_cols=35 Identities=14% Similarity=0.429 Sum_probs=27.8
Q ss_pred HhcCcEEEEec-CcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 573 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 573 L~~~kVlvVGa-GglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
-.++.|+|.|+ |+||..+++.|+..|. ++++++.+
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~------~Vval~Rn 113 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGF------RVRAGVRS 113 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC------eEEEEeCC
Confidence 34567888885 9999999999999997 67766543
No 256
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=87.15 E-value=2 Score=43.64 Aligned_cols=87 Identities=16% Similarity=0.142 Sum_probs=50.4
Q ss_pred EEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhc-CC--CEEEEeecCC
Q 001074 181 ILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN-NA--VVLSTLTSKL 257 (1163)
Q Consensus 181 VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLN-p~--V~V~~~~~~l 257 (1163)
|+|+|+|++|+.+|-.|..+|. .+++++... ++++..+.=-.+. +. -.+.......
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~--------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 59 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP--------------------RLEAIKEQGLTITGPDGDETVQPPIVIS 59 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH--------------------HHHHHHHHCEEEEETTEEEEEEEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc--------------------cHHhhhheeEEEEecccceecccccccC
Confidence 7999999999999999999887 588877432 1222111100000 11 0011100001
Q ss_pred C-hhhcCCCcEEEEecCChhHHHHHHHHHHhc
Q 001074 258 T-KEQLSDFQAVVFTDISLDKAIEFDDFCHNH 288 (1163)
Q Consensus 258 ~-~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~ 288 (1163)
. .+....+|+||+|.-+......+..+....
T Consensus 60 ~~~~~~~~~D~viv~vKa~~~~~~l~~l~~~~ 91 (151)
T PF02558_consen 60 APSADAGPYDLVIVAVKAYQLEQALQSLKPYL 91 (151)
T ss_dssp SHGHHHSTESEEEE-SSGGGHHHHHHHHCTGE
T ss_pred cchhccCCCcEEEEEecccchHHHHHHHhhcc
Confidence 1 135678999999998877777777654433
No 257
>PRK06141 ornithine cyclodeaminase; Validated
Probab=87.07 E-value=1.8 Score=50.16 Aligned_cols=77 Identities=19% Similarity=0.166 Sum_probs=55.1
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEe
Q 001074 175 RLFASNILVSGMQGLGAEIAKNLIL-AGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 253 (1163)
Q Consensus 175 kL~~s~VlIiG~gglGsEiaKNLvl-aGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~ 253 (1163)
+...++|+|+|+|+.|..+++.+.+ .|+.+|++++.. ..|++..++++++... .+...
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs-------------------~~~a~~~a~~~~~~g~--~~~~~ 180 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD-------------------PAKAEALAAELRAQGF--DAEVV 180 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--ceEEe
Confidence 3457899999999999999987665 688999998742 3478888888776422 23332
Q ss_pred ecCCChhhcCCCcEEEEecCC
Q 001074 254 TSKLTKEQLSDFQAVVFTDIS 274 (1163)
Q Consensus 254 ~~~l~~e~l~~fdvVI~~~~~ 274 (1163)
. + .++.+.++|+||.|+.+
T Consensus 181 ~-~-~~~av~~aDIVi~aT~s 199 (314)
T PRK06141 181 T-D-LEAAVRQADIISCATLS 199 (314)
T ss_pred C-C-HHHHHhcCCEEEEeeCC
Confidence 1 1 23467899999887764
No 258
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=86.93 E-value=1 Score=52.73 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=32.3
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
.|++++|.|||+|.+|..+++.|...|. +++.+|..
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~------~V~~~d~~ 178 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGA------TITAYDAY 178 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEeCC
Confidence 4788899999999999999999999987 88888854
No 259
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=86.89 E-value=2.9 Score=52.92 Aligned_cols=90 Identities=13% Similarity=0.295 Sum_probs=64.3
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecCC
Q 001074 178 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL 257 (1163)
Q Consensus 178 ~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~l 257 (1163)
+.+|+|+|.|.+|..+++.|...|+ .++++|.|.- +++ .+++.. ..++..+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~----~~~~~g----~~v~~GDa 451 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDIS-------------------AVN----LMRKYG----YKVYYGDA 451 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHH----HHHhCC----CeEEEeeC
Confidence 5699999999999999999999999 6899997542 222 233321 22233333
Q ss_pred C-h-----hhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeE
Q 001074 258 T-K-----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFI 295 (1163)
Q Consensus 258 ~-~-----e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI 295 (1163)
+ + .-+++.++||++.++.+....+-..+|+++|..+.|
T Consensus 452 t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~Ii 495 (601)
T PRK03659 452 TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHIL 495 (601)
T ss_pred CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEE
Confidence 2 2 246688999999998888888888999987544444
No 260
>PRK07062 short chain dehydrogenase; Provisional
Probab=86.88 E-value=1.7 Score=48.27 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=44.5
Q ss_pred HhcCcEEEEec-CcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCe
Q 001074 573 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (1163)
Q Consensus 573 L~~~kVlvVGa-GglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~ 651 (1163)
++++.++|.|+ ||||.++++.|+..|. ++++++.+. .+.+.+++.+.+..|..+
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~------~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~ 60 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA------SVAICGRDE-------------------ERLASAEARLREKFPGAR 60 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC------eEEEEeCCH-------------------HHHHHHHHHHHhhCCCce
Confidence 56788999985 7899999999999997 788876542 234444555665566666
Q ss_pred EEEEeccCC
Q 001074 652 IEALQNRVG 660 (1163)
Q Consensus 652 I~~~~~~v~ 660 (1163)
+..+...+.
T Consensus 61 ~~~~~~D~~ 69 (265)
T PRK07062 61 LLAARCDVL 69 (265)
T ss_pred EEEEEecCC
Confidence 666655554
No 261
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=86.83 E-value=1.8 Score=54.92 Aligned_cols=88 Identities=13% Similarity=0.275 Sum_probs=63.2
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecCC
Q 001074 178 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL 257 (1163)
Q Consensus 178 ~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~l 257 (1163)
+.+|+|+|+|-+|..+++.|...|+ .++++|.|.- |++ .+++. ... ++.++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~----~~~~~--g~~--v~~GDa 451 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPD-------------------HIE----TLRKF--GMK--VFYGDA 451 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHH----HHHhc--CCe--EEEEeC
Confidence 5799999999999999999999998 6888897552 332 22222 222 233332
Q ss_pred C-h-----hhcCCCcEEEEecCChhHHHHHHHHHHhcCCCce
Q 001074 258 T-K-----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAIS 293 (1163)
Q Consensus 258 ~-~-----e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~Ip 293 (1163)
+ + .-+++.++||++.++.+....+-..+|++.|.++
T Consensus 452 t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~ 493 (621)
T PRK03562 452 TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHFPHLQ 493 (621)
T ss_pred CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhCCCCe
Confidence 2 2 3456789999999988888888889999875444
No 262
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=86.82 E-value=1.8 Score=41.94 Aligned_cols=85 Identities=18% Similarity=0.246 Sum_probs=56.4
Q ss_pred EEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEEEEec
Q 001074 578 VFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQN 657 (1163)
Q Consensus 578 VlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~~~~~ 657 (1163)
|+|+|+|.+|-++++.|...|. .++++|.|.-. .+.+.... +.++..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~------~vvvid~d~~~-----------------------~~~~~~~~----~~~i~g 47 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI------DVVVIDRDPER-----------------------VEELREEG----VEVIYG 47 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS------EEEEEESSHHH-----------------------HHHHHHTT----SEEEES
T ss_pred eEEEcCCHHHHHHHHHHHhCCC------EEEEEECCcHH-----------------------HHHHHhcc----cccccc
Confidence 6899999999999999999664 89999987531 12222222 223444
Q ss_pred cCCcccccccchhhhccCCEEEEccCchHHHHHHHhhccc
Q 001074 658 RVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLY 697 (1163)
Q Consensus 658 ~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~ 697 (1163)
.... ...+...-+++++.|+.++++...-..+...++.
T Consensus 48 d~~~--~~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~ 85 (116)
T PF02254_consen 48 DATD--PEVLERAGIEKADAVVILTDDDEENLLIALLARE 85 (116)
T ss_dssp -TTS--HHHHHHTTGGCESEEEEESSSHHHHHHHHHHHHH
T ss_pred cchh--hhHHhhcCccccCEEEEccCCHHHHHHHHHHHHH
Confidence 3332 2223344567899999999988877777777765
No 263
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=86.79 E-value=0.71 Score=42.93 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=34.0
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcc
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVI 615 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~I 615 (1163)
.+..++++|+|+|++|..++..|...|. .+++++|.|.+
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~-----~~v~v~~rdi~ 58 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGG-----KKVVLCDRDIL 58 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCEE
Confidence 4778999999999999999999999976 68999988433
No 264
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.72 E-value=1.1 Score=51.16 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=31.3
Q ss_pred HHhcCcEEEEecCc-chHHHHHHHHHcccccCCCccEEEecC
Q 001074 572 KLEDAKVFIVGSGA-LGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 572 kL~~~kVlvVGaGg-lGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
.|++++|+|||.|. +|-.+++.|...|. ++++++.
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga------tVtv~~s 190 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA------SVTILHS 190 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC------eEEEEeC
Confidence 47899999999999 99999999999986 8888863
No 265
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=86.67 E-value=2.7 Score=47.83 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=28.0
Q ss_pred cEEEEecCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 577 kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
+|.|||+|.+|..+++.|+..|. +++++|.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~------~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH------TVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC------EEEEEECC
Confidence 69999999999999999999987 78888764
No 266
>PLN02494 adenosylhomocysteinase
Probab=86.58 E-value=1.7 Score=52.79 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=32.9
Q ss_pred HhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcc
Q 001074 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVI 615 (1163)
Q Consensus 573 L~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~I 615 (1163)
+.+++|+|+|+|.+|..+++.+...|+ +++++|.|..
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga------~VIV~e~dp~ 288 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA------RVIVTEIDPI 288 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEeCCch
Confidence 678999999999999999999999998 7898886644
No 267
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=86.57 E-value=2.9 Score=48.21 Aligned_cols=34 Identities=15% Similarity=0.299 Sum_probs=29.8
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCC
Q 001074 178 ASNILVSGMQGLGAEIAKNLILAGV-KSVTLHDEG 211 (1163)
Q Consensus 178 ~s~VlIiG~gglGsEiaKNLvlaGV-g~itLvD~d 211 (1163)
..+|+|||+|.+|..+++.|...|. .+++++|.+
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~ 40 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS 40 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 4689999999999999999999997 478888853
No 268
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=86.55 E-value=4.8 Score=45.80 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=28.2
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001074 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 211 (1163)
Q Consensus 180 ~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d 211 (1163)
+|+|+|+|.+|+.+|..|+.+|. .++++|.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 69999999999999999999994 79999863
No 269
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=86.51 E-value=1.5 Score=50.31 Aligned_cols=111 Identities=14% Similarity=0.145 Sum_probs=60.9
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHh-cCCCEEEEeecCCC
Q 001074 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQEL-NNAVVLSTLTSKLT 258 (1163)
Q Consensus 180 ~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eL-Np~V~V~~~~~~l~ 258 (1163)
+|.|||+|..|..++.+|+..|. .++++|.+.-....+... |...+....+....+ .+++-+...+....
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~ 72 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKED--------RTTGVANLRELSQRLSAPRVVWVMVPHGIV 72 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc--------CCcccCCHHHHHhhcCCCCEEEEEcCchHH
Confidence 69999999999999999999995 788888755332222211 100000011111111 24444444433211
Q ss_pred hh-------hcCCCcEEEEecC-ChhHHHHHHHHHHhcCCCceeEEeeecc
Q 001074 259 KE-------QLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRG 301 (1163)
Q Consensus 259 ~e-------~l~~fdvVI~~~~-~~~~~~~ln~~cr~~~~~IpfI~~~~~G 301 (1163)
++ .+..=++||.+.. .+....++.+.+.+.+ +.|+.+.+.|
T Consensus 73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g--~~~vda~vsG 121 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKG--IHLLDCGTSG 121 (298)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcC--CeEEecCCCC
Confidence 11 1223356666543 3345556666677777 7777776655
No 270
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.49 E-value=3.4 Score=50.25 Aligned_cols=93 Identities=18% Similarity=0.067 Sum_probs=58.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecCCC
Q 001074 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLT 258 (1163)
Q Consensus 179 s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~l~ 258 (1163)
++|+|+|+|+.|..+|+.|...|. ++++.|..... +...+...|.++ .+++..-. ...
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~~~------------------~~~~~~~~l~~~--gi~~~~g~-~~~ 58 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRNDSP------------------ELLERQQELEQE--GITVKLGK-PLE 58 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCch------------------hhHHHHHHHHHc--CCEEEECC-ccc
Confidence 479999999999999999999997 79998864321 122233445444 34443211 111
Q ss_pred h----hhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEE
Q 001074 259 K----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIK 296 (1163)
Q Consensus 259 ~----e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~ 296 (1163)
. ..+.++|+||.+..-... ..+-..+++.+ +|++.
T Consensus 59 ~~~~~~~~~~~d~vv~s~gi~~~-~~~~~~a~~~~--i~v~~ 97 (459)
T PRK02705 59 LESFQPWLDQPDLVVVSPGIPWD-HPTLVELRERG--IEVIG 97 (459)
T ss_pred hhhhhHHhhcCCEEEECCCCCCC-CHHHHHHHHcC--CcEEE
Confidence 1 256789998886542222 23344567888 88774
No 271
>PRK07340 ornithine cyclodeaminase; Validated
Probab=86.46 E-value=1.7 Score=50.21 Aligned_cols=76 Identities=13% Similarity=0.041 Sum_probs=56.4
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEee
Q 001074 176 LFASNILVSGMQGLGAEIAKNLIL-AGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (1163)
Q Consensus 176 L~~s~VlIiG~gglGsEiaKNLvl-aGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~ 254 (1163)
....+|+|+|+|+.|...++.+.. .|+.++.++|.+ ..|+++.++++++.+. .+. .
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~a~~~~~~~~--~~~--~ 179 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT-------------------AASAAAFCAHARALGP--TAE--P 179 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--eeE--E
Confidence 456899999999999999999974 688999998753 3478888888876532 222 1
Q ss_pred cCCChhhcCCCcEEEEecCCh
Q 001074 255 SKLTKEQLSDFQAVVFTDISL 275 (1163)
Q Consensus 255 ~~l~~e~l~~fdvVI~~~~~~ 275 (1163)
.+ .++.+.++|+||.|+.+.
T Consensus 180 ~~-~~~av~~aDiVitaT~s~ 199 (304)
T PRK07340 180 LD-GEAIPEAVDLVVTATTSR 199 (304)
T ss_pred CC-HHHHhhcCCEEEEccCCC
Confidence 11 234678999999988653
No 272
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=86.46 E-value=1.9 Score=52.37 Aligned_cols=92 Identities=21% Similarity=0.267 Sum_probs=60.6
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 001074 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (1163)
Q Consensus 176 L~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~ 255 (1163)
+.+.+|+|+|+|..|..+++.|...| -.+++.|.+... .+...+ ..+-+.+.+. ..
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~-~~~~~~--------------------~~~~~~i~~~--~g 60 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAP-EGLAAQ--------------------PLLLEGIEVE--LG 60 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCc-cchhhh--------------------hhhccCceee--cC
Confidence 44899999999999999999999999 589999976553 222111 1122333333 33
Q ss_pred CCChhhcCCCcEEEEecC-ChhHHHHHHHHHHhcCCCceeE
Q 001074 256 KLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFI 295 (1163)
Q Consensus 256 ~l~~e~l~~fdvVI~~~~-~~~~~~~ln~~cr~~~~~IpfI 295 (1163)
..+.+.+..+|+||.+-. ++... +-+.+++.+ +|++
T Consensus 61 ~~~~~~~~~~d~vV~SPGi~~~~p--~v~~A~~~g--i~i~ 97 (448)
T COG0771 61 SHDDEDLAEFDLVVKSPGIPPTHP--LVEAAKAAG--IEII 97 (448)
T ss_pred ccchhccccCCEEEECCCCCCCCH--HHHHHHHcC--CcEE
Confidence 333377889999998764 32222 444566777 7765
No 273
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=86.45 E-value=3.1 Score=47.55 Aligned_cols=33 Identities=30% Similarity=0.360 Sum_probs=29.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001074 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (1163)
Q Consensus 179 s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~ 212 (1163)
++|.|||+|-+|+.+|.+|+.+|. .++++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999996 899998643
No 274
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.42 E-value=1.8 Score=50.28 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=30.2
Q ss_pred cCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 575 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 575 ~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
..||.|||||.+|+.++-.|++.|++ ..|.|+|-
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~----~el~LiD~ 36 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLA----DELVLVDV 36 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEeC
Confidence 46999999999999999999999984 57999974
No 275
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=86.42 E-value=1.2 Score=51.05 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=28.6
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001074 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (1163)
Q Consensus 180 ~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~ 212 (1163)
+|.+||+|-+|..++++|...|. .|+++|.+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~ 33 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQ 33 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 69999999999999999999996 688888653
No 276
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=86.30 E-value=0.63 Score=53.45 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=28.1
Q ss_pred cEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCc
Q 001074 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (1163)
Q Consensus 577 kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~ 614 (1163)
+|.|||+|.+|..++++|+..|. ++++.|.+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~------~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH------DCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC------EEEEEECCH
Confidence 69999999999999999999997 777777543
No 277
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=86.28 E-value=1.3 Score=51.30 Aligned_cols=75 Identities=21% Similarity=0.225 Sum_probs=49.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCE--EEEeec
Q 001074 179 SNILVSGMQGLGAEIAKNLILAGVK-SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVV--LSTLTS 255 (1163)
Q Consensus 179 s~VlIiG~gglGsEiaKNLvlaGVg-~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~--V~~~~~ 255 (1163)
.+|.|+|+|.+|+.+|-.|+.-+++ .+.|+|-. +.+++..+.-|....+... +.+...
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~-------------------~~~~~G~a~DL~~~~~~~~~~~~i~~~ 61 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN-------------------EEKAEGVALDLSHAAAPLGSDVKITGD 61 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcc-------------------cccccchhcchhhcchhccCceEEecC
Confidence 3799999999999999999999999 99999953 1122222223333333221 222221
Q ss_pred CCChhhcCCCcEEEEecC
Q 001074 256 KLTKEQLSDFQAVVFTDI 273 (1163)
Q Consensus 256 ~l~~e~l~~fdvVI~~~~ 273 (1163)
-+.+.+++.|+||++..
T Consensus 62 -~~y~~~~~aDiVvitAG 78 (313)
T COG0039 62 -GDYEDLKGADIVVITAG 78 (313)
T ss_pred -CChhhhcCCCEEEEeCC
Confidence 12456789999998864
No 278
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=86.24 E-value=1.2 Score=41.37 Aligned_cols=39 Identities=33% Similarity=0.385 Sum_probs=34.9
Q ss_pred HHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001074 174 RRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (1163)
Q Consensus 174 ~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~ 212 (1163)
..+..++|+|+|+|++|.-++..|...|...++++|.|.
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rdi 57 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRDI 57 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 347889999999999999999999999989999999833
No 279
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=86.24 E-value=0.79 Score=43.00 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=54.2
Q ss_pred cEEEEecCcchHHHHHHHHHcccccCCCccEEEe-cCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEEEE
Q 001074 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTIT-DDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 655 (1163)
Q Consensus 577 kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~iv-D~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~~~ 655 (1163)
||.+||+|.+|..+++.|+..|+ ...+++++ +.+. .|+.-++ +..+ +.+...
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~---~~~~v~~~~~r~~-------------------~~~~~~~----~~~~-~~~~~~ 53 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGI---KPHEVIIVSSRSP-------------------EKAAELA----KEYG-VQATAD 53 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS----GGEEEEEEESSH-------------------HHHHHHH----HHCT-TEEESE
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---CceeEEeeccCcH-------------------HHHHHHH----Hhhc-cccccC
Confidence 68999999999999999999996 22566644 3221 1222222 2232 111110
Q ss_pred eccCCcccccccchhhhccCCEEEEccCchHHHHHHHhh-cccccccEEe
Q 001074 656 QNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQR-CLYFQKPLLE 704 (1163)
Q Consensus 656 ~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~-c~~~~~PlI~ 704 (1163)
+ +.+..+..|+||.|+........+... ....++-+|+
T Consensus 54 ------~-----~~~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis 92 (96)
T PF03807_consen 54 ------D-----NEEAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVIS 92 (96)
T ss_dssp ------E-----HHHHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEE
T ss_pred ------C-----hHHhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEE
Confidence 1 135567899999999988877777666 2334555554
No 280
>PLN02206 UDP-glucuronate decarboxylase
Probab=86.18 E-value=3.6 Score=50.13 Aligned_cols=102 Identities=13% Similarity=0.206 Sum_probs=62.8
Q ss_pred cCeEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 001074 178 ASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (1163)
Q Consensus 178 ~s~VlIiG-~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~ 256 (1163)
..+|||.| .|-+|+.+++.|...|. +|..+|..... +.+.....+ .++ .++....+
T Consensus 119 ~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~~~~~------------------~~~~~~~~~--~~~--~~~~i~~D 175 (442)
T PLN02206 119 GLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDNFFTG------------------RKENVMHHF--SNP--NFELIRHD 175 (442)
T ss_pred CCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeCCCcc------------------chhhhhhhc--cCC--ceEEEECC
Confidence 47899999 58899999999999997 56666642210 000000111 122 34444455
Q ss_pred CChhhcCCCcEEEEecC---------Chh--------HHHHHHHHHHhcCCCceeEEeeecceeE
Q 001074 257 LTKEQLSDFQAVVFTDI---------SLD--------KAIEFDDFCHNHQPAISFIKAEVRGLFG 304 (1163)
Q Consensus 257 l~~e~l~~fdvVI~~~~---------~~~--------~~~~ln~~cr~~~~~IpfI~~~~~G~~G 304 (1163)
+.+..+.++|+||-+.. +.. ....+-++|++.+ ++||.+++...||
T Consensus 176 ~~~~~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g--~r~V~~SS~~VYg 238 (442)
T PLN02206 176 VVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTSTSEVYG 238 (442)
T ss_pred ccChhhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEECChHHhC
Confidence 54445567888885432 111 1245567899988 7999988877665
No 281
>PRK07576 short chain dehydrogenase; Provisional
Probab=86.12 E-value=1.5 Score=49.06 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=31.6
Q ss_pred HHHhcCcEEEEec-CcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 571 KKLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 571 ~kL~~~kVlvVGa-GglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
.++.+++++|.|+ |+||.++++.|+..|. +++++|.+
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~------~V~~~~r~ 42 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGA------NVAVASRS 42 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCC
Confidence 3577889999985 8999999999999987 68888754
No 282
>PRK08251 short chain dehydrogenase; Provisional
Probab=86.02 E-value=2.7 Score=45.99 Aligned_cols=62 Identities=18% Similarity=0.277 Sum_probs=44.0
Q ss_pred cCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEE
Q 001074 575 DAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 653 (1163)
Q Consensus 575 ~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~ 653 (1163)
+++++|.| .||||.++++.|+..|. ++++++.+. .+.+.+...+...+|..++.
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~------~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~ 56 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR------DLALCARRT-------------------DRLEELKAELLARYPGIKVA 56 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC------EEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEE
Confidence 56788887 89999999999999986 788776531 12334445555566777777
Q ss_pred EEeccCCc
Q 001074 654 ALQNRVGP 661 (1163)
Q Consensus 654 ~~~~~v~~ 661 (1163)
.+..++..
T Consensus 57 ~~~~D~~~ 64 (248)
T PRK08251 57 VAALDVND 64 (248)
T ss_pred EEEcCCCC
Confidence 77666653
No 283
>PLN02928 oxidoreductase family protein
Probab=86.00 E-value=0.88 Score=53.55 Aligned_cols=35 Identities=43% Similarity=0.606 Sum_probs=31.9
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
.|.+++|.|||.|.||.++++.|...|+ +++.+|.
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~afG~------~V~~~dr 190 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPFGV------KLLATRR 190 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhCCC------EEEEECC
Confidence 5889999999999999999999999888 8888875
No 284
>PRK06141 ornithine cyclodeaminase; Validated
Probab=85.77 E-value=2.1 Score=49.65 Aligned_cols=142 Identities=21% Similarity=0.255 Sum_probs=82.8
Q ss_pred cccCchhhHhhh-hhhHHHHHhhcC------Cccccee--eeeeeccCCCCCCCCCCCCCCCccCchhhhhhhcCHHHHH
Q 001074 501 AVLNPMAAMFGG-IVGQEVVKACSG------KFHPLYQ--FFYFDSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQK 571 (1163)
Q Consensus 501 ~el~PvaA~iGG-iaAQEVIKaiTg------kf~PI~q--~~~fD~ie~Lp~~~~~~~~~~~~~~Rydrq~~l~G~~~q~ 571 (1163)
+.+..|.+.+++ ++ .+|.++. +.-|-.+ .++||.-++.|..-++...+.. -|-..- .-.+.+...
T Consensus 48 ~~~~~mp~~~~~~~~---g~K~~~~~p~N~~~glp~~~g~v~l~d~~tG~p~ai~d~~~lT~--~RTaa~-sala~~~La 121 (314)
T PRK06141 48 ATLLLMPAWNEGRYI---GVKAVTVFPGNPARGLPGLHSTYLLFDGRTGEPLALVDGTELTA--RRTAAA-SALAASYLA 121 (314)
T ss_pred ceEEEeeeecCCCee---EEEEEeecCCCCcCCCCceEEEEEEEECCCCCEEEEEcCcchhc--chhHHH-HHHHHHHhC
Confidence 456666666643 33 3787763 2334433 6778888777753222222111 111111 112333344
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHH-cccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCC
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 650 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~-~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~ 650 (1163)
+...++|+|+|+|+.|..+++.+.+ .|+ .+|+|++.+ ..|++.+++.+.+.. .
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~-----~~V~V~~Rs-------------------~~~a~~~a~~~~~~g--~ 175 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRPI-----KQVRVWGRD-------------------PAKAEALAAELRAQG--F 175 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCCC-----CEEEEEcCC-------------------HHHHHHHHHHHHhcC--C
Confidence 4567899999999999999997776 576 788887432 457777777776532 1
Q ss_pred eEEEEeccCCcccccccchhhhccCCEEEEccCc
Q 001074 651 NIEALQNRVGPETENVFDDTFWENITCVINALDN 684 (1163)
Q Consensus 651 ~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn 684 (1163)
.+.+.. +. .+...++|+|++|+..
T Consensus 176 ~~~~~~-----~~-----~~av~~aDIVi~aT~s 199 (314)
T PRK06141 176 DAEVVT-----DL-----EAAVRQADIISCATLS 199 (314)
T ss_pred ceEEeC-----CH-----HHHHhcCCEEEEeeCC
Confidence 233211 11 2345789999999873
No 285
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=85.70 E-value=4.1 Score=47.66 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=30.5
Q ss_pred HHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEec
Q 001074 571 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITD 611 (1163)
Q Consensus 571 ~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD 611 (1163)
..|++++|.|||+|.+|..++++|..+|+ ++++.+
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~------~Vvv~~ 47 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGV------DVVVGL 47 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCC------EEEEEE
Confidence 56788999999999999999999999998 666554
No 286
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=85.61 E-value=0.76 Score=59.14 Aligned_cols=172 Identities=14% Similarity=0.103 Sum_probs=90.2
Q ss_pred CcEEEEecCcchHHHHHHHH-HcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCC--CCeE
Q 001074 576 AKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINP--RLNI 652 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa-~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np--~~~I 652 (1163)
++|.|||+|.+|+.++-.+| ..|+ .++++|.+.= .|.| ++..+.-..+.+.+... ....
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~------~V~l~d~~~~---~l~~---------~~~~~~~~l~~~~~~~~~~~~~~ 371 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL------PVRIKDINPQ---GINH---------ALKYSWDLLDKKVKRRHLKPSER 371 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC------eEEEEeCCHH---HHHH---------HHHHHHHHHHHHHHcCCCCHHHH
Confidence 58999999999999999999 8898 9999997542 1111 11111111111111000 0000
Q ss_pred EEEeccCCcccccccchhhhccCCEEEEccC-chHHHHHHHhhcccccc--cEEecCCCCcccc-eEEEeCCcccccCCC
Q 001074 653 EALQNRVGPETENVFDDTFWENITCVINALD-NVNARLYVDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHLTENYGAS 728 (1163)
Q Consensus 653 ~~~~~~v~~~~e~~~~~~f~~~~DvVi~alD-n~~aR~~v~~~c~~~~~--PlI~sgt~G~~G~-v~viip~~t~~y~~~ 728 (1163)
.....++...+. + +-++++|+||.|+- +.+.++.+-...-..-. .++-+-|.+.--. ..-.+.+-..+.+.+
T Consensus 372 ~~~~~~i~~~~~--~--~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~H 447 (708)
T PRK11154 372 DKQMALISGTTD--Y--RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLH 447 (708)
T ss_pred HHHHhcEEEeCC--h--HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEe
Confidence 000011111111 1 22579999999975 66777655555444333 3555555553211 000111111122222
Q ss_pred CCCCCCCCCCccccCCCCChhhHHHHHHHHhhhhccCChhhh
Q 001074 729 RDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEV 770 (1163)
Q Consensus 729 ~dp~~~~~p~Ct~~~fP~~~~Hci~wAr~~F~~lF~~~~~~~ 770 (1163)
--.|....|++-+-.-|.....++.++..++.. .++.|-.+
T Consensus 448 ff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~-~gk~pv~v 488 (708)
T PRK11154 448 YFSPVEKMPLVEVIPHAKTSAETIATTVALAKK-QGKTPIVV 488 (708)
T ss_pred cCCccccCceEEEECCCCCCHHHHHHHHHHHHH-cCCceEEE
Confidence 122233457777777889999999999998765 46655433
No 287
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=85.53 E-value=2.3 Score=46.37 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=30.6
Q ss_pred HhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecCCc
Q 001074 573 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (1163)
Q Consensus 573 L~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~D~ 614 (1163)
+++++|+|.| +|++|..+++.|+..|. ++++++.+.
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~------~V~~~~r~~ 40 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGA------EVIVVDICG 40 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC------EEEEEeCCH
Confidence 5678899998 79999999999999997 788887653
No 288
>PRK08339 short chain dehydrogenase; Provisional
Probab=85.44 E-value=2.6 Score=47.13 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=29.5
Q ss_pred HhcCcEEEEec-CcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 573 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 573 L~~~kVlvVGa-GglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
|+++.++|.|+ ||||.++++.|+..|. +++++|.+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~------~V~~~~r~ 41 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA------DVILLSRN 41 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC------EEEEEeCC
Confidence 56788899985 7999999999999997 78887643
No 289
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=85.43 E-value=1.6 Score=53.74 Aligned_cols=117 Identities=11% Similarity=0.101 Sum_probs=71.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCch---HHHHHHHHHHHh-cCCCEEEEee
Q 001074 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKN---RALASVQKLQEL-NNAVVLSTLT 254 (1163)
Q Consensus 179 s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~---Kaea~~~~L~eL-Np~V~V~~~~ 254 (1163)
++|.+||+|-.|..+|.||+..|. +++++|.+.-....+...+ ..-|.. -+....+..+.+ .|.+-+....
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~~----~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~ 81 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA----KKEGNLPLYGFKDPEDFVLSIQKPRSVIILVK 81 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHhh----hhcCCcccccCCCHHHHHhcCCCCCEEEEECC
Confidence 479999999999999999999997 8999987532222221100 000110 111222222222 3666565554
Q ss_pred cCC-Ch-------hhcCCCcEEEEecC-ChhHHHHHHHHHHhcCCCceeEEeeecce
Q 001074 255 SKL-TK-------EQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRGL 302 (1163)
Q Consensus 255 ~~l-~~-------e~l~~fdvVI~~~~-~~~~~~~ln~~cr~~~~~IpfI~~~~~G~ 302 (1163)
..- .+ ..+..=|+||++.- +++...++.+.+.++| +.|+.+.+.|.
T Consensus 82 ~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~G--i~fldapVSGG 136 (493)
T PLN02350 82 AGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKG--LLYLGMGVSGG 136 (493)
T ss_pred CcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcC--CeEEeCCCcCC
Confidence 321 11 12344578887764 5777788889999999 88998887764
No 290
>PRK05867 short chain dehydrogenase; Provisional
Probab=85.43 E-value=1.7 Score=48.04 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=29.2
Q ss_pred HhcCcEEEEec-CcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 573 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 573 L~~~kVlvVGa-GglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
+++++++|.|+ ||||.++++.|+..|. ++++++.
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~------~V~~~~r 41 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA------QVAIAAR 41 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEcC
Confidence 56788999995 8999999999999997 7777753
No 291
>PRK07340 ornithine cyclodeaminase; Validated
Probab=85.36 E-value=1.2 Score=51.38 Aligned_cols=141 Identities=17% Similarity=0.219 Sum_probs=79.7
Q ss_pred cccCchhhHhhhhhhHHHHHhhcC------Ccccce--eeeeeeccCCCCCCCCCCCCCCCccCchhhhhhhcCHHHHHH
Q 001074 501 AVLNPMAAMFGGIVGQEVVKACSG------KFHPLY--QFFYFDSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQKK 572 (1163)
Q Consensus 501 ~el~PvaA~iGGiaAQEVIKaiTg------kf~PI~--q~~~fD~ie~Lp~~~~~~~~~~~~~~Rydrq~~l~G~~~q~k 572 (1163)
+.+..|.|..+++. .+|.++. +--|-. -.++||.-++.|..-++...+.. -|-. -..-...+...+
T Consensus 49 ~~~~~mpa~~~~~~---g~K~~~~~p~N~~~glp~~~g~i~l~d~~tG~p~a~~d~~~lT~--~RTa-A~sala~~~La~ 122 (304)
T PRK07340 49 GVLLSMPASAADLA---ITKLVTVCPGNAARGLPTIQGEVVVADAATGERLFLLDGPTVTG--RRTA-AVSLLAARTLAP 122 (304)
T ss_pred CEEEEEeeccCCcc---EEEEEEeCCCCccCCCCcceEEEEEEECCCCcEEEEEcChhHHH--HHHH-HHHHHHHHHhCC
Confidence 34555555555543 3776652 112222 25667777776653222221100 0100 001122333344
Q ss_pred HhcCcEEEEecCcchHHHHHHHHH-cccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCe
Q 001074 573 LEDAKVFIVGSGALGCEFLKNVAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (1163)
Q Consensus 573 L~~~kVlvVGaGglGce~lknLa~-~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~ 651 (1163)
...++++|+|+|+.|...++.+.. .|+ .++.|.|.+ ..|++..++.+..... .
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~-----~~v~v~~r~-------------------~~~a~~~a~~~~~~~~--~ 176 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPV-----RRVWVRGRT-------------------AASAAAFCAHARALGP--T 176 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCC-----CEEEEEcCC-------------------HHHHHHHHHHHHhcCC--e
Confidence 456899999999999999999975 677 678887543 3477778887765432 2
Q ss_pred EEEEeccCCcccccccchhhhccCCEEEEccCc
Q 001074 652 IEALQNRVGPETENVFDDTFWENITCVINALDN 684 (1163)
Q Consensus 652 I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn 684 (1163)
+. . . +. ++...++|+|++|+-.
T Consensus 177 ~~-~----~-~~-----~~av~~aDiVitaT~s 198 (304)
T PRK07340 177 AE-P----L-DG-----EAIPEAVDLVVTATTS 198 (304)
T ss_pred eE-E----C-CH-----HHHhhcCCEEEEccCC
Confidence 22 1 1 11 2345799999999853
No 292
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=85.36 E-value=4.7 Score=46.38 Aligned_cols=32 Identities=31% Similarity=0.343 Sum_probs=28.6
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001074 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (1163)
Q Consensus 180 ~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~ 212 (1163)
+|.|+|+|.+|+.++.+|+..|. .++++|.+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 79999999999999999999997 588988643
No 293
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.30 E-value=2.8 Score=47.94 Aligned_cols=33 Identities=30% Similarity=0.308 Sum_probs=30.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001074 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (1163)
Q Consensus 179 s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~ 212 (1163)
.+|.|+|+|.+|+.+|..|+.+|. .++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999998 799999754
No 294
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.23 E-value=2.1 Score=46.85 Aligned_cols=35 Identities=26% Similarity=0.483 Sum_probs=30.2
Q ss_pred HhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 573 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 573 L~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
+++++++|+| .|+||.++++.|+..|. ++++++.+
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~------~V~~~~r~ 38 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGA------RVVVTDRN 38 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCC------EEEEEeCC
Confidence 5678999999 58999999999999998 68888754
No 295
>PRK10537 voltage-gated potassium channel; Provisional
Probab=85.21 E-value=2 Score=51.37 Aligned_cols=93 Identities=10% Similarity=0.019 Sum_probs=59.8
Q ss_pred HHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEE
Q 001074 173 MRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLST 252 (1163)
Q Consensus 173 q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~ 252 (1163)
+...++.||+|+|.|.+|.++++.|...|. .++++|.+.++. .. ...+ ..
T Consensus 235 ~~~~~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~~------------------------~~---~~g~--~v 284 (393)
T PRK10537 235 SHMHRKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLEH------------------------RL---PDDA--DL 284 (393)
T ss_pred hhcccCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhhh------------------------hc---cCCC--cE
Confidence 344457899999999999999999998886 678888652210 00 0111 12
Q ss_pred eecCC-Ch-----hhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeE
Q 001074 253 LTSKL-TK-----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFI 295 (1163)
Q Consensus 253 ~~~~l-~~-----e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI 295 (1163)
..++. ++ ..+++.+.||++.++.+....+-..+|+.++.++.|
T Consensus 285 I~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~p~~kII 333 (393)
T PRK10537 285 IPGDSSDSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMSSDVKTV 333 (393)
T ss_pred EEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhCCCCcEE
Confidence 22222 22 245677888888777666666667788887544444
No 296
>PRK08618 ornithine cyclodeaminase; Validated
Probab=85.11 E-value=3 Score=48.61 Aligned_cols=78 Identities=15% Similarity=0.182 Sum_probs=56.1
Q ss_pred hcCeEEEEcCChHHHHHHHHHH-HhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 001074 177 FASNILVSGMQGLGAEIAKNLI-LAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (1163)
Q Consensus 177 ~~s~VlIiG~gglGsEiaKNLv-laGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~ 255 (1163)
...+|+|+|+|+.|...+..+. ..|+++++|+|.+ ..|++..++++++..+ +.+.....
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~~~~~~~~~~-~~~~~~~~ 185 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT-------------------FEKAYAFAQEIQSKFN-TEIYVVNS 185 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhcC-CcEEEeCC
Confidence 4678999999999998888775 5799999999753 3477777777765432 33333321
Q ss_pred CCChhhcCCCcEEEEecCChh
Q 001074 256 KLTKEQLSDFQAVVFTDISLD 276 (1163)
Q Consensus 256 ~l~~e~l~~fdvVI~~~~~~~ 276 (1163)
.++.+.+.|+||.|+.+..
T Consensus 186 --~~~~~~~aDiVi~aT~s~~ 204 (325)
T PRK08618 186 --ADEAIEEADIIVTVTNAKT 204 (325)
T ss_pred --HHHHHhcCCEEEEccCCCC
Confidence 1456788999999987554
No 297
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=85.07 E-value=2.3 Score=56.60 Aligned_cols=95 Identities=15% Similarity=0.089 Sum_probs=59.0
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhC-CC------------eEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHH
Q 001074 177 FASNILVSGMQGLGAEIAKNLILAG-VK------------SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQE 243 (1163)
Q Consensus 177 ~~s~VlIiG~gglGsEiaKNLvlaG-Vg------------~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~e 243 (1163)
+.++|+|+|+|.+|..++.+|+..+ +. .+++.|. -..+|+.+++.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~-------------------~~~~a~~la~~--- 625 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL-------------------YLKDAKETVEG--- 625 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC-------------------CHHHHHHHHHh---
Confidence 4679999999999999999998753 32 2444432 22344444333
Q ss_pred hcCCCEEEEe-ecCCC--hhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEe
Q 001074 244 LNNAVVLSTL-TSKLT--KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKA 297 (1163)
Q Consensus 244 LNp~V~V~~~-~~~l~--~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~ 297 (1163)
.|.++.... ..+.. .+.+++.|+||.|... .....+...|-+++ +.++..
T Consensus 626 -~~~~~~v~lDv~D~e~L~~~v~~~DaVIsalP~-~~H~~VAkaAieaG--kHvv~e 678 (1042)
T PLN02819 626 -IENAEAVQLDVSDSESLLKYVSQVDVVISLLPA-SCHAVVAKACIELK--KHLVTA 678 (1042)
T ss_pred -cCCCceEEeecCCHHHHHHhhcCCCEEEECCCc-hhhHHHHHHHHHcC--CCEEEC
Confidence 244322221 11211 1245689999988754 45678889999999 766644
No 298
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=85.05 E-value=3 Score=41.60 Aligned_cols=93 Identities=18% Similarity=0.297 Sum_probs=57.1
Q ss_pred eEEEEcC-ChHHHHHHHHHHH-hCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhc-CCCEEEEeecC
Q 001074 180 NILVSGM-QGLGAEIAKNLIL-AGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN-NAVVLSTLTSK 256 (1163)
Q Consensus 180 ~VlIiG~-gglGsEiaKNLvl-aGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLN-p~V~V~~~~~~ 256 (1163)
||.|+|+ |-.|.++++.+.. .|+.=+-.+|... ++.. ..|+| .+..+. ..+.+. .+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~---~~~~------g~d~g---------~~~~~~~~~~~v~---~~ 60 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP---SAKV------GKDVG---------ELAGIGPLGVPVT---DD 60 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT---STTT------TSBCH---------HHCTSST-SSBEB---S-
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC---cccc------cchhh---------hhhCcCCcccccc---hh
Confidence 7999999 9999999999999 7776677777644 1110 12333 111111 122222 11
Q ss_pred CChhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEe
Q 001074 257 LTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKA 297 (1163)
Q Consensus 257 l~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~ 297 (1163)
+ ++.+...||||+.+ .++.....-++|.+++ +|+|.+
T Consensus 61 l-~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g--~~~ViG 97 (124)
T PF01113_consen 61 L-EELLEEADVVIDFT-NPDAVYDNLEYALKHG--VPLVIG 97 (124)
T ss_dssp H-HHHTTH-SEEEEES--HHHHHHHHHHHHHHT---EEEEE
T ss_pred H-HHhcccCCEEEEcC-ChHHhHHHHHHHHhCC--CCEEEE
Confidence 1 33455689999888 6666777788888888 888863
No 299
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=85.05 E-value=2.6 Score=46.51 Aligned_cols=36 Identities=19% Similarity=0.466 Sum_probs=30.6
Q ss_pred HHhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 572 KLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 572 kL~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
.+.+++|+|.| .|+||.++++.|+..|. +++++|.+
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~------~V~~~~r~ 43 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGA------EVILNGRD 43 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCC------EEEEEeCC
Confidence 36788999998 59999999999999997 78887653
No 300
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.90 E-value=4.3 Score=49.24 Aligned_cols=94 Identities=16% Similarity=0.197 Sum_probs=60.2
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 001074 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (1163)
Q Consensus 176 L~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~ 255 (1163)
+.+++|+|+|.|+.|..+|+.|...|. .+++.|..... . ...+|.+....+. ....
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~~~~-----------------~----~~~~l~~~~~gi~--~~~g 58 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAELKP-----------------E----RVAQIGKMFDGLV--FYTG 58 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCc-----------------h----hHHHHhhccCCcE--EEeC
Confidence 457899999999999999999999997 68888854321 0 0123443222333 3334
Q ss_pred CCChhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEE
Q 001074 256 KLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIK 296 (1163)
Q Consensus 256 ~l~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~ 296 (1163)
...+..+.++|+||.+..=... ..+-..+++++ +|++.
T Consensus 59 ~~~~~~~~~~d~vv~spgi~~~-~p~~~~a~~~~--i~v~~ 96 (445)
T PRK04308 59 RLKDALDNGFDILALSPGISER-QPDIEAFKQNG--GRVLG 96 (445)
T ss_pred CCCHHHHhCCCEEEECCCCCCC-CHHHHHHHHcC--CcEEE
Confidence 4344556789999987652221 12344557788 88873
No 301
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=84.89 E-value=8.5 Score=40.07 Aligned_cols=93 Identities=22% Similarity=0.249 Sum_probs=59.5
Q ss_pred EEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecCCCh
Q 001074 181 ILVSGM-QGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTK 259 (1163)
Q Consensus 181 VlIiG~-gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~l~~ 259 (1163)
|+|+|+ |.+|..+++.|+..| .+++.+=. + ..|++. .+.+ +....++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R----------~---------~~~~~~--------~~~~--~~~~~d~~d 50 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVR----------S---------PSKAED--------SPGV--EIIQGDLFD 50 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEES----------S---------GGGHHH--------CTTE--EEEESCTTC
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEec----------C---------chhccc--------cccc--ccceeeehh
Confidence 799997 999999999999999 46666422 1 112222 4444 444444432
Q ss_pred -----hhcCCCcEEEEecCC----hhHHHHHHHHHHhcCCCceeEEeeecceeE
Q 001074 260 -----EQLSDFQAVVFTDIS----LDKAIEFDDFCHNHQPAISFIKAEVRGLFG 304 (1163)
Q Consensus 260 -----e~l~~fdvVI~~~~~----~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G 304 (1163)
+.+.++|+||.+..+ ......+-+.|++.+. ..+|..++.|.++
T Consensus 51 ~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~-~~~v~~s~~~~~~ 103 (183)
T PF13460_consen 51 PDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGV-KRVVYLSSAGVYR 103 (183)
T ss_dssp HHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTS-SEEEEEEETTGTT
T ss_pred hhhhhhhhhhcchhhhhhhhhccccccccccccccccccc-ccceeeeccccCC
Confidence 346789999988753 3345567778888873 2566656666443
No 302
>PRK09186 flagellin modification protein A; Provisional
Probab=84.79 E-value=2.5 Score=46.47 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=27.8
Q ss_pred HhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEec
Q 001074 573 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITD 611 (1163)
Q Consensus 573 L~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD 611 (1163)
+++++|+|.| .|+||.++++.|+..|. ++++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~------~v~~~~ 35 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGG------IVIAAD 35 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEe
Confidence 4578899998 48999999999999997 677764
No 303
>PLN02602 lactate dehydrogenase
Probab=84.78 E-value=2.1 Score=50.53 Aligned_cols=33 Identities=24% Similarity=0.458 Sum_probs=30.1
Q ss_pred CcEEEEecCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
.||.|||+|.+|+.++-.|+..|++ +.|.|+|-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~----~el~LiDi 70 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLA----DELALVDV 70 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC----CEEEEEeC
Confidence 6999999999999999999999994 68999974
No 304
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=84.72 E-value=1.3 Score=53.20 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=32.1
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
.|.+++|.|||.|.||.++++.+...|+ ++..+|.
T Consensus 148 ~L~gktvGIiG~G~IG~~vA~~~~~fGm------~V~~~d~ 182 (409)
T PRK11790 148 EVRGKTLGIVGYGHIGTQLSVLAESLGM------RVYFYDI 182 (409)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEECC
Confidence 5889999999999999999999999998 8888884
No 305
>PLN02206 UDP-glucuronate decarboxylase
Probab=84.71 E-value=2.7 Score=51.21 Aligned_cols=34 Identities=18% Similarity=0.451 Sum_probs=28.9
Q ss_pred HhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 573 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 573 L~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
-+++||||.| +|-||+.+++.|...|. +++++|.
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~------~V~~ld~ 151 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARGD------SVIVVDN 151 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCcC------EEEEEeC
Confidence 3457899999 59999999999999997 7777764
No 306
>PRK06223 malate dehydrogenase; Reviewed
Probab=84.70 E-value=5.3 Score=45.95 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=29.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 001074 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 210 (1163)
Q Consensus 179 s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~ 210 (1163)
.+|.|+|+|.+|.-+|..++..|++.+.|+|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 58999999999999999999998669999996
No 307
>PLN02306 hydroxypyruvate reductase
Probab=84.70 E-value=1 Score=53.78 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=30.9
Q ss_pred HHhcCcEEEEecCcchHHHHHHHH-HcccccCCCccEEEecC
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa-~~Gv~~~~~g~i~ivD~ 612 (1163)
.|.+++|.|||.|.||.++++.|+ ..|+ ++..+|.
T Consensus 162 ~L~gktvGIiG~G~IG~~vA~~l~~~fGm------~V~~~d~ 197 (386)
T PLN02306 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM------NLIYYDL 197 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCC------EEEEECC
Confidence 588999999999999999999985 6777 7888875
No 308
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=84.70 E-value=6.7 Score=45.50 Aligned_cols=84 Identities=19% Similarity=0.190 Sum_probs=53.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeec---
Q 001074 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS--- 255 (1163)
Q Consensus 179 s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~--- 255 (1163)
.+|+|+|+|++|+..+-.|.++| ..++++-.+. +++ ++++- ...+.....
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~--------------------~~~----~l~~~--GL~i~~~~~~~~ 53 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSR--------------------RLE----ALKKK--GLRIEDEGGNFT 53 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHH--------------------HHH----HHHhC--CeEEecCCCccc
Confidence 37999999999999999999999 7677653211 122 22221 122222221
Q ss_pred -----CCChhhcCCCcEEEEecCChhHHHHHHHHHHhcC
Q 001074 256 -----KLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQ 289 (1163)
Q Consensus 256 -----~l~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~ 289 (1163)
..+.+.+..+|+||++.-+......+..+....+
T Consensus 54 ~~~~~~~~~~~~~~~Dlviv~vKa~q~~~al~~l~~~~~ 92 (307)
T COG1893 54 TPVVAATDAEALGPADLVIVTVKAYQLEEALPSLAPLLG 92 (307)
T ss_pred cccccccChhhcCCCCEEEEEeccccHHHHHHHhhhcCC
Confidence 1134566789999999887776666666655544
No 309
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=84.70 E-value=1.7 Score=50.34 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=29.6
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001074 178 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (1163)
Q Consensus 178 ~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~ 212 (1163)
..+|+|+|+|++|+-+|..|..+| ..++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC
Confidence 458999999999999999999999 4788887654
No 310
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=84.68 E-value=3.8 Score=47.69 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=25.8
Q ss_pred CcEEEEec-CcchHHHHHHHHHc-ccccCCCccEEEecC
Q 001074 576 AKVFIVGS-GALGCEFLKNVALM-GVSCGNQGKLTITDD 612 (1163)
Q Consensus 576 ~kVlvVGa-GglGce~lknLa~~-Gv~~~~~g~i~ivD~ 612 (1163)
++|+|.|+ |-||+.+++.|... |. +++.+|.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~------~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDW------EVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCC------eEEEEeC
Confidence 47999996 99999999999876 45 7887764
No 311
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=84.64 E-value=0.83 Score=48.44 Aligned_cols=42 Identities=21% Similarity=0.223 Sum_probs=35.1
Q ss_pred HHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 001074 171 ETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTV 213 (1163)
Q Consensus 171 e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V 213 (1163)
.....|.+++|.|+|+|.+|.++|+-|...|. +|..+|...-
T Consensus 29 ~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~ 70 (178)
T PF02826_consen 29 FPGRELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPK 70 (178)
T ss_dssp TTBS-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCH
T ss_pred CCccccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCC
Confidence 34458899999999999999999999999999 8999997554
No 312
>PRK07680 late competence protein ComER; Validated
Probab=84.63 E-value=5.7 Score=44.97 Aligned_cols=78 Identities=15% Similarity=0.244 Sum_probs=48.4
Q ss_pred eEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 001074 180 NILVSGMQGLGAEIAKNLILAGV---KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (1163)
Q Consensus 180 ~VlIiG~gglGsEiaKNLvlaGV---g~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~ 256 (1163)
+|.|||+|.+|..++..|...|. ..++++|.+. .++ +++.+..+.+.+. . +
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~-------------------~~~----~~~~~~~~g~~~~--~-~ 55 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTP-------------------AKA----YHIKERYPGIHVA--K-T 55 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCH-------------------HHH----HHHHHHcCCeEEE--C-C
Confidence 59999999999999999999984 4577766421 122 2233322333321 1 1
Q ss_pred CChhhcCCCcEEEEecCChhHHHHHHHH
Q 001074 257 LTKEQLSDFQAVVFTDISLDKAIEFDDF 284 (1163)
Q Consensus 257 l~~e~l~~fdvVI~~~~~~~~~~~ln~~ 284 (1163)
..+.+.+.|+||+|..+......+.++
T Consensus 56 -~~~~~~~aDiVilav~p~~~~~vl~~l 82 (273)
T PRK07680 56 -IEEVISQSDLIFICVKPLDIYPLLQKL 82 (273)
T ss_pred -HHHHHHhCCEEEEecCHHHHHHHHHHH
Confidence 224567899999998654444444443
No 313
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.59 E-value=1.4 Score=51.39 Aligned_cols=74 Identities=9% Similarity=0.134 Sum_probs=48.7
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhCCC------eEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhc----CC
Q 001074 179 SNILVSGM-QGLGAEIAKNLILAGVK------SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN----NA 247 (1163)
Q Consensus 179 s~VlIiG~-gglGsEiaKNLvlaGVg------~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLN----p~ 247 (1163)
.+|.|+|+ |.+|+.+|-.|+..|+- ++.|+|-.. + +.|+++.+--|+... +.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~----~-------------~~~a~g~a~Dl~~~~~~~~~~ 65 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQ----A-------------LKALEGVAMELEDCAFPLLAE 65 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCC----c-------------ccccceeehhhhhccccccCc
Confidence 58999999 99999999999998874 599998521 0 112222222333332 23
Q ss_pred CEEEEeecCCChhhcCCCcEEEEecC
Q 001074 248 VVLSTLTSKLTKEQLSDFQAVVFTDI 273 (1163)
Q Consensus 248 V~V~~~~~~l~~e~l~~fdvVI~~~~ 273 (1163)
+.+. .+ +.+.+.+.|+||.|..
T Consensus 66 ~~i~--~~--~~~~~~daDivvitaG 87 (322)
T cd01338 66 IVIT--DD--PNVAFKDADWALLVGA 87 (322)
T ss_pred eEEe--cC--cHHHhCCCCEEEEeCC
Confidence 3332 22 3567889999998865
No 314
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.56 E-value=3.4 Score=50.96 Aligned_cols=94 Identities=14% Similarity=0.106 Sum_probs=59.9
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 001074 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (1163)
Q Consensus 176 L~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~ 255 (1163)
+++++|+|+|+|+.|..+|+.|...|. +++..|..... + ..+.|.+.-+.+.+. ..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~~~-----------------~----~~~~L~~~~~~~~~~--~g 60 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADTREAP-----------------P----NLAALRAELPDAEFV--GG 60 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCCCCc-----------------h----hHHHHHhhcCCcEEE--eC
Confidence 457789999999999999999999997 78888853210 0 012344433333333 33
Q ss_pred CCChhhcCCCcEEEEecC-ChhH--HHHHHHHHHhcCCCceeE
Q 001074 256 KLTKEQLSDFQAVVFTDI-SLDK--AIEFDDFCHNHQPAISFI 295 (1163)
Q Consensus 256 ~l~~e~l~~fdvVI~~~~-~~~~--~~~ln~~cr~~~~~IpfI 295 (1163)
...++.+.++|+||.+.. +... ...+-..+++.+ +|++
T Consensus 61 ~~~~~~~~~~d~vv~sp~I~~~~~~~~~~~~~a~~~~--i~v~ 101 (498)
T PRK02006 61 PFDPALLDGVDLVALSPGLSPLEAALAPLVAAARERG--IPVW 101 (498)
T ss_pred CCchhHhcCCCEEEECCCCCCcccccCHHHHHHHHCC--CcEE
Confidence 344566778999998754 2211 112334457778 8888
No 315
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.54 E-value=7.2 Score=44.50 Aligned_cols=32 Identities=34% Similarity=0.461 Sum_probs=29.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001074 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 211 (1163)
Q Consensus 179 s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d 211 (1163)
.+|.|+|+|.+|+.+|..|+.+|. .++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 589999999999999999999997 79999854
No 316
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.45 E-value=2.1 Score=46.83 Aligned_cols=34 Identities=32% Similarity=0.478 Sum_probs=29.7
Q ss_pred HhcCcEEEEec-CcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 573 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 573 L~~~kVlvVGa-GglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
+++++++|.|+ |+||..+++.|+..|. +++++|.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~------~vi~~~r 37 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA------KLALIDL 37 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeC
Confidence 56789999996 9999999999999987 6888874
No 317
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=84.43 E-value=0.9 Score=49.26 Aligned_cols=36 Identities=28% Similarity=0.456 Sum_probs=32.4
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
.|++++|+|+|.|.+|..+++.|...|. +++++|.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~------~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA------KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEcCC
Confidence 4778999999999999999999999997 88888755
No 318
>PRK09242 tropinone reductase; Provisional
Probab=84.36 E-value=5.3 Score=44.11 Aligned_cols=63 Identities=21% Similarity=0.318 Sum_probs=44.5
Q ss_pred HhhcCeEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEe
Q 001074 175 RLFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 253 (1163)
Q Consensus 175 kL~~s~VlIiG~-gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~ 253 (1163)
+|++++++|.|+ ||+|.++++.|+..|. ++++++.+ ..+++...+.+...+|..++...
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~ 65 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARD-------------------ADALAQARDELAEEFPEREVHGL 65 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC-------------------HHHHHHHHHHHHhhCCCCeEEEE
Confidence 467789999985 7999999999999997 67777642 12445556666666666666555
Q ss_pred ecCC
Q 001074 254 TSKL 257 (1163)
Q Consensus 254 ~~~l 257 (1163)
..++
T Consensus 66 ~~Dl 69 (257)
T PRK09242 66 AADV 69 (257)
T ss_pred ECCC
Confidence 4444
No 319
>PRK05854 short chain dehydrogenase; Provisional
Probab=84.33 E-value=4.7 Score=46.45 Aligned_cols=57 Identities=28% Similarity=0.384 Sum_probs=40.6
Q ss_pred HhhcCeEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEE
Q 001074 175 RLFASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLS 251 (1163)
Q Consensus 175 kL~~s~VlIiG-~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~ 251 (1163)
.|++++|+|.| .+|+|.++|+.|+..|. +|.+++.+ ..+++.+.+.|.+.++...+.
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~-------------------~~~~~~~~~~l~~~~~~~~v~ 68 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRN-------------------RAKGEAAVAAIRTAVPDAKLS 68 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHHhCCCCceE
Confidence 35677888887 67999999999999996 67776532 235666667776666644443
No 320
>PRK07478 short chain dehydrogenase; Provisional
Probab=84.24 E-value=2 Score=47.38 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=28.9
Q ss_pred HhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 573 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 573 L~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
+++++++|.| .||||.++++.|+..|. ++++++.
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~------~v~~~~r 38 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA------KVVVGAR 38 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEEeC
Confidence 5677899998 58999999999999997 6777764
No 321
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=84.23 E-value=3.6 Score=47.42 Aligned_cols=35 Identities=20% Similarity=0.498 Sum_probs=28.9
Q ss_pred cCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 575 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 575 ~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
..+|.|||+|.+|..+++.|...|.. .+++++|.+
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~----~~V~~~dr~ 40 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLA----GEIVGADRS 40 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCC----cEEEEEECC
Confidence 35899999999999999999999861 267887753
No 322
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.23 E-value=3.5 Score=50.48 Aligned_cols=92 Identities=16% Similarity=0.062 Sum_probs=59.7
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 001074 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (1163)
Q Consensus 176 L~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~ 255 (1163)
+++++|+|+|+|-.|..+|+.|...|. .+++.|.+... + ... ...|++ .+ .....
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~-~v~~~d~~~~~--~-------------~~~----~~~l~~---~~--~~~~~ 60 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLP-AQALTLFCNAV--E-------------ARE----VGALAD---AA--LLVET 60 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCC-EEEEEcCCCcc--c-------------chH----HHHHhh---cC--EEEeC
Confidence 457899999999999999999999998 48888864331 0 001 112433 22 22223
Q ss_pred CCChhhcCCCcEEEEecC-ChhHHHHHHHHHHhcCCCceeEE
Q 001074 256 KLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIK 296 (1163)
Q Consensus 256 ~l~~e~l~~fdvVI~~~~-~~~~~~~ln~~cr~~~~~IpfI~ 296 (1163)
...++.+.++|+||.+.. +.. ..+-..+++.+ +|++.
T Consensus 61 ~~~~~~~~~~d~vV~SpgI~~~--~p~~~~a~~~~--i~i~~ 98 (468)
T PRK04690 61 EASAQRLAAFDVVVKSPGISPY--RPEALAAAARG--TPFIG 98 (468)
T ss_pred CCChHHccCCCEEEECCCCCCC--CHHHHHHHHcC--CcEEE
Confidence 334567788999998764 222 22344567888 88885
No 323
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=84.17 E-value=8 Score=44.49 Aligned_cols=31 Identities=32% Similarity=0.370 Sum_probs=28.3
Q ss_pred EEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001074 181 ILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 211 (1163)
Q Consensus 181 VlIiG~gglGsEiaKNLvlaGVg~itLvD~d 211 (1163)
|.|||+|.+|+-+|-.|++.|...++|+|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 5799999999999999999987699999975
No 324
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=84.13 E-value=4.1 Score=46.33 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=28.0
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001074 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 211 (1163)
Q Consensus 180 ~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d 211 (1163)
+|.|||+|.+|..+++.|...|. .|+++|.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence 69999999999999999999996 78888863
No 325
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.03 E-value=3.3 Score=47.91 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=28.9
Q ss_pred eEEEEcCChHHHHHHHHHHHhCC-CeEEEEeC
Q 001074 180 NILVSGMQGLGAEIAKNLILAGV-KSVTLHDE 210 (1163)
Q Consensus 180 ~VlIiG~gglGsEiaKNLvlaGV-g~itLvD~ 210 (1163)
+|.|||+|.+|+.+|-.|+..|+ ..+.|+|.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~ 33 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDI 33 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 69999999999999999999996 78999995
No 326
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=83.93 E-value=1.3 Score=50.84 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=28.8
Q ss_pred cEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCc
Q 001074 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (1163)
Q Consensus 577 kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~ 614 (1163)
+|.+||+|.+|..++++|+..|. +++++|.+.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~------~v~v~dr~~ 33 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH------EVVGYDRNP 33 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC------eEEEEECCH
Confidence 79999999999999999999997 788888763
No 327
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=83.88 E-value=5.8 Score=45.05 Aligned_cols=82 Identities=22% Similarity=0.237 Sum_probs=49.6
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEe
Q 001074 177 FASNILVSGMQGLGAEIAKNLILAGV---KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 253 (1163)
Q Consensus 177 ~~s~VlIiG~gglGsEiaKNLvlaGV---g~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~ 253 (1163)
...+|.+||+|.+|..++++|...|+ ..++++|... ..+++ .+.+.. .+++.
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~------------------~~~~~----~l~~~~-g~~~~-- 56 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSN------------------ETRLQ----ELHQKY-GVKGT-- 56 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCC------------------HHHHH----HHHHhc-CceEe--
Confidence 34589999999999999999999983 3444443210 01222 222211 23222
Q ss_pred ecCCChhhcCCCcEEEEecCChhHHHHHHHHH
Q 001074 254 TSKLTKEQLSDFQAVVFTDISLDKAIEFDDFC 285 (1163)
Q Consensus 254 ~~~l~~e~l~~fdvVI~~~~~~~~~~~ln~~c 285 (1163)
. + ..+...+.|+||+|..+......+..+.
T Consensus 57 ~-~-~~e~~~~aDvVilav~p~~~~~vl~~l~ 86 (279)
T PRK07679 57 H-N-KKELLTDANILFLAMKPKDVAEALIPFK 86 (279)
T ss_pred C-C-HHHHHhcCCEEEEEeCHHHHHHHHHHHH
Confidence 1 1 1244678899999998766666665554
No 328
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=83.87 E-value=1.6 Score=50.89 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=29.1
Q ss_pred HHhcCcEEEEecCcchHHHHHHHH-HcccccCCCccEEEecC
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa-~~Gv~~~~~g~i~ivD~ 612 (1163)
.|.+++|.|||.|.||.++++.+. ..|+ ++...|.
T Consensus 142 ~L~gktvGIiG~G~IG~~va~~l~~~fgm------~V~~~~~ 177 (323)
T PRK15409 142 DVHHKTLGIVGMGRIGMALAQRAHFGFNM------PILYNAR 177 (323)
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHhcCCC------EEEEECC
Confidence 588999999999999999999987 5565 6666653
No 329
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=83.85 E-value=5.1 Score=46.64 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=28.2
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q 001074 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHD 209 (1163)
Q Consensus 176 L~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD 209 (1163)
|++++|.|||+|.+|..+|++|..+|+ .+.+.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~-~Viv~~ 33 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGL-NVIVGL 33 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCC-eEEEEE
Confidence 568899999999999999999999998 355444
No 330
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=83.84 E-value=1 Score=58.02 Aligned_cols=169 Identities=17% Similarity=0.187 Sum_probs=86.1
Q ss_pred CcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccC----cCcccCcccCcccchHHHHHHHHHHhhCCCCe
Q 001074 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSN----LSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SN----LnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~ 651 (1163)
++|.|||+|..|+.++-.+|+.|+ .++++|.+.=.... +.+. |-+.-.-|+-....+.+.+.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~------~V~l~d~~~~~l~~~~~~~~~~-l~~~~~~g~~~~~~~~~~~~~------ 380 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV------PVIMKDINQKALDLGMTEAAKL-LNKQVERGKIDGAKMAGVLSS------ 380 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC------eEEEEeCCHHHHHHHHHHHHHH-HHHHHHcCCCChhhHHHHHhC------
Confidence 579999999999999999999998 99999976422111 0000 000001111111111122211
Q ss_pred EEEEeccCCcccccccchhhhccCCEEEEccC-chHHHHHHHhhcccccc--cEEecCCCCcccc-eEEEeCCcccccCC
Q 001074 652 IEALQNRVGPETENVFDDTFWENITCVINALD-NVNARLYVDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHLTENYGA 727 (1163)
Q Consensus 652 I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alD-n~~aR~~v~~~c~~~~~--PlI~sgt~G~~G~-v~viip~~t~~y~~ 727 (1163)
|+.. + + + +-++++|+||.|+- +.+.++.+-...-..-. .+|-+-|.+.--. ..-.+++-.-+.+.
T Consensus 381 i~~~-------~-~-~--~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~ 449 (715)
T PRK11730 381 IRPT-------L-D-Y--AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGM 449 (715)
T ss_pred eEEe-------C-C-H--HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEE
Confidence 1111 1 1 1 22589999999964 66666654444333222 3555555443110 00011111111111
Q ss_pred C-CCCCCCCCCCccccCCCCChhhHHHHHHHHhhhhccCChhhh
Q 001074 728 S-RDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEV 770 (1163)
Q Consensus 728 ~-~dp~~~~~p~Ct~~~fP~~~~Hci~wAr~~F~~lF~~~~~~~ 770 (1163)
+ -.|+. ..|+.-+-.-|...+.+++++.+++.. .++.|-.+
T Consensus 450 Hff~P~~-~~~lVEvv~g~~T~~~~~~~~~~~~~~-lgk~pv~v 491 (715)
T PRK11730 450 HFFNPVH-RMPLVEVIRGEKTSDETIATVVAYASK-MGKTPIVV 491 (715)
T ss_pred ecCCccc-ccceEEeeCCCCCCHHHHHHHHHHHHH-hCCceEEe
Confidence 1 12333 334444555677788899998887654 46666544
No 331
>PRK06545 prephenate dehydrogenase; Validated
Probab=83.79 E-value=6.2 Score=46.64 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=27.4
Q ss_pred CcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
.+|.|||+|.+|..+++.|...|. .+.++|.|
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~------~v~i~~~~ 32 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP------DVFIIGYD 32 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC------CeEEEEeC
Confidence 479999999999999999999997 56676654
No 332
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=83.75 E-value=2.6 Score=48.61 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=48.1
Q ss_pred EEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCC---CeEEE
Q 001074 578 VFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPR---LNIEA 654 (1163)
Q Consensus 578 VlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~---~~I~~ 654 (1163)
|.|||+|.+|+.++-.|+..|++ .+|+++|.+ +.|++..+.-+....+. .++..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~----~el~l~D~~-------------------~~~~~g~~~DL~~~~~~~~~~~i~~ 57 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLA----SELVLVDVN-------------------EEKAKGDALDLSHASAFLATGTIVR 57 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCC----CEEEEEeCC-------------------ccHHHHHHHhHHHhccccCCCeEEE
Confidence 57999999999999999999984 579999753 23455555555555432 12221
Q ss_pred EeccCCcccccccchhhhccCCEEEEccC
Q 001074 655 LQNRVGPETENVFDDTFWENITCVINALD 683 (1163)
Q Consensus 655 ~~~~v~~~~e~~~~~~f~~~~DvVi~alD 683 (1163)
..+ .+-++++|+||.+..
T Consensus 58 -----~~~------~~~l~~aDiVIitag 75 (300)
T cd00300 58 -----GGD------YADAADADIVVITAG 75 (300)
T ss_pred -----CCC------HHHhCCCCEEEEcCC
Confidence 111 134678999998863
No 333
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=83.72 E-value=6.9 Score=44.67 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=27.1
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 001074 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDE 210 (1163)
Q Consensus 180 ~VlIiG~gglGsEiaKNLvlaGVg~itLvD~ 210 (1163)
+|+|+|+|++|+.+|..|+.+|. .+++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 69999999999999999999995 6888875
No 334
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.57 E-value=6.1 Score=45.95 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=28.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001074 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 211 (1163)
Q Consensus 179 s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d 211 (1163)
.+|.|+|+|.+|+.+|.+|+.+|. .++++|.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 379999999999999999999996 68888864
No 335
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=83.53 E-value=7.8 Score=42.42 Aligned_cols=84 Identities=15% Similarity=0.133 Sum_probs=49.5
Q ss_pred eEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcC--CCEEEEeecC
Q 001074 180 NILVSG-MQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNN--AVVLSTLTSK 256 (1163)
Q Consensus 180 ~VlIiG-~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp--~V~V~~~~~~ 256 (1163)
+|.||| +|.+|+.+++.|+..| .++++++.+. .+++...+....... .+.+......
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~~-------------------~~~~~l~~~~~~~~~~~g~~~~~~~~~ 61 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRDL-------------------EKAEEAAAKALEELGHGGSDIKVTGAD 61 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcCH-------------------HHHHHHHHHHHhhccccCCCceEEEeC
Confidence 699997 8999999999999999 5777776421 233333332211111 0111111111
Q ss_pred CChhhcCCCcEEEEecCChhHHHHHHHH
Q 001074 257 LTKEQLSDFQAVVFTDISLDKAIEFDDF 284 (1163)
Q Consensus 257 l~~e~l~~fdvVI~~~~~~~~~~~ln~~ 284 (1163)
..+.+...|+||+|..+......+.++
T Consensus 62 -~~ea~~~aDvVilavp~~~~~~~l~~l 88 (219)
T TIGR01915 62 -NAEAAKRADVVILAVPWDHVLKTLESL 88 (219)
T ss_pred -hHHHHhcCCEEEEECCHHHHHHHHHHH
Confidence 235577899999998765554444444
No 336
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=83.43 E-value=1.3 Score=56.32 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=62.6
Q ss_pred cCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEEE
Q 001074 575 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 654 (1163)
Q Consensus 575 ~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~~ 654 (1163)
..+|+|+|+|-+|..+++.|...|+ .++++|.|.- +++.+ ++. + ..+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~------~vvvID~d~~-------------------~v~~~----~~~--g--~~v 446 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV------KMTVLDHDPD-------------------HIETL----RKF--G--MKV 446 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC------CEEEEECCHH-------------------HHHHH----Hhc--C--CeE
Confidence 4699999999999999999999998 8999998864 22222 221 2 223
Q ss_pred EeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccc
Q 001074 655 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF 698 (1163)
Q Consensus 655 ~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~ 698 (1163)
+..+.+. ..++...-.++.|+||.++||.+.-..+-..+++.
T Consensus 447 ~~GDat~--~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~ 488 (621)
T PRK03562 447 FYGDATR--MDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEH 488 (621)
T ss_pred EEEeCCC--HHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 4443332 12232334568999999999998888887777665
No 337
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=83.42 E-value=3.1 Score=48.53 Aligned_cols=146 Identities=17% Similarity=0.192 Sum_probs=81.4
Q ss_pred ccccCchhhHhhhhhhHHHHHhhcCC------cccce--eeeeeeccCCCCCCC-CCCCCCCCccCchhhhhhhcCHHHH
Q 001074 500 RAVLNPMAAMFGGIVGQEVVKACSGK------FHPLY--QFFYFDSVESLPTEP-LDSTEFKPINSRYDAQISVFGAKLQ 570 (1163)
Q Consensus 500 ~~el~PvaA~iGGiaAQEVIKaiTgk------f~PI~--q~~~fD~ie~Lp~~~-~~~~~~~~~~~Rydrq~~l~G~~~q 570 (1163)
.+.+..|.|.++|.-. -.+|.++.- --|-. -.++||.-.+.|..- ++...+ ..-|-+.. ........
T Consensus 49 ~~~~~~m~~~~~~~~~-~g~K~~~~~p~N~~~glp~~~g~i~l~d~~tG~~~ai~~d~~~l--T~~RTaa~-~~laa~~l 124 (326)
T TIGR02992 49 NGEVDVKTAYVPGLDG-FAIKVSPGFFDNPKLGLPSLNGMMVLLSSRTGLLQALLLDNGYL--TDVRTAAA-GAVAARHL 124 (326)
T ss_pred CCeEEEeehhcCCCCc-eEEEEecccCCccccCCCceeEEEEEEECCCCCceEEEcCCchH--HHHHHHHH-HHHHHHHh
Confidence 3466777787776311 237766542 22332 356778766655432 122111 11122111 11111111
Q ss_pred HHHhcCcEEEEecCcchHHHHHHHH-HcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCC
Q 001074 571 KKLEDAKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPR 649 (1163)
Q Consensus 571 ~kL~~~kVlvVGaGglGce~lknLa-~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~ 649 (1163)
.+-..++++|+|+|+.|...++.|+ ..|+ .+++|.+.+ ..|++..++.+.+..+
T Consensus 125 a~~~~~~v~iiGaG~qA~~~~~al~~~~~i-----~~v~V~~R~-------------------~~~a~~~a~~~~~~~g- 179 (326)
T TIGR02992 125 AREDSSVVAIFGAGMQARLQLEALTLVRDI-----RSARIWARD-------------------SAKAEALALQLSSLLG- 179 (326)
T ss_pred CCCCCcEEEEECCCHHHHHHHHHHHHhCCc-----cEEEEECCC-------------------HHHHHHHHHHHHhhcC-
Confidence 1223568999999999999999997 4787 788887432 2477777777754332
Q ss_pred CeEEEEeccCCcccccccchhhhccCCEEEEccCc
Q 001074 650 LNIEALQNRVGPETENVFDDTFWENITCVINALDN 684 (1163)
Q Consensus 650 ~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn 684 (1163)
+++.... +. .+.+.++|+|++|+-.
T Consensus 180 ~~v~~~~-----~~-----~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 180 IDVTAAT-----DP-----RAAMSGADIIVTTTPS 204 (326)
T ss_pred ceEEEeC-----CH-----HHHhccCCEEEEecCC
Confidence 3333321 11 2345789999999854
No 338
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=83.40 E-value=2.8 Score=49.03 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=30.9
Q ss_pred HHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q 001074 173 MRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHD 209 (1163)
Q Consensus 173 q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD 209 (1163)
...|++++|.|||+|.+|..+|+||..+|+ .+.+.+
T Consensus 12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~ 47 (330)
T PRK05479 12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGL 47 (330)
T ss_pred hhhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEE
Confidence 345778999999999999999999999998 566655
No 339
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=83.39 E-value=6 Score=48.88 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=29.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001074 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (1163)
Q Consensus 179 s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~ 212 (1163)
.+|.|||+|-+|+.+|.+|+.+|. .++++|.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 379999999999999999999998 899999744
No 340
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.36 E-value=3.1 Score=50.50 Aligned_cols=125 Identities=20% Similarity=0.193 Sum_probs=71.4
Q ss_pred HHhhc-CeEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEE
Q 001074 174 RRLFA-SNILVSGMQGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLS 251 (1163)
Q Consensus 174 ~kL~~-s~VlIiG~gglGsEiaKNLvlaGV-g~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~ 251 (1163)
.|+.+ .+|+|+|+|+.|...+..|...|- -.+++.|..... . ..++|++ .+++
T Consensus 2 ~~~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~-----------------~----~~~~l~~---g~~~- 56 (438)
T PRK04663 2 DRWQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETP-----------------P----GQEQLPE---DVEL- 56 (438)
T ss_pred CcccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCc-----------------h----hHHHhhc---CCEE-
Confidence 35566 789999999999999999999864 478888853210 0 1123422 3333
Q ss_pred EeecCCChhhcCCCcEEEEecC-ChhHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEcCCceEEEcCCCCCCcceeec
Q 001074 252 TLTSKLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGEDPHTGIIA 330 (1163)
Q Consensus 252 ~~~~~l~~e~l~~fdvVI~~~~-~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf~d~g~~f~v~d~~ge~p~~~~I~ 330 (1163)
..+..+++.+.++|+||.+.. +.. ...-..+++.+ ||++.-. .+.+.+. . ..-..|.=++|....+.++.
T Consensus 57 -~~g~~~~~~~~~~d~vV~SpgI~~~--~p~~~~a~~~g--i~i~~~~--el~~~~~-~-~~~I~VTGTnGKTTTt~ll~ 127 (438)
T PRK04663 57 -HSGGWNLEWLLEADLVVTNPGIALA--TPEIQQVLAAG--IPVVGDI--ELFAWAV-D-KPVIAITGSNGKSTVTDLTG 127 (438)
T ss_pred -EeCCCChHHhccCCEEEECCCCCCC--CHHHHHHHHCC--CcEEEHH--HHHHhhc-C-CCEEEEeCCCCHHHHHHHHH
Confidence 334345566788999888764 222 12334557788 8887422 1222221 1 11223333456555555555
Q ss_pred cc
Q 001074 331 SI 332 (1163)
Q Consensus 331 ~I 332 (1163)
+|
T Consensus 128 ~i 129 (438)
T PRK04663 128 VM 129 (438)
T ss_pred HH
Confidence 44
No 341
>PLN02780 ketoreductase/ oxidoreductase
Probab=83.36 E-value=3.3 Score=48.06 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=43.0
Q ss_pred cCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEE
Q 001074 575 DAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 653 (1163)
Q Consensus 575 ~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~ 653 (1163)
++.++|.| .||||.++++.|+..|. ++++++.+. .|.+.+++.+...++..++.
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~------~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~ 107 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL------NLVLVARNP-------------------DKLKDVSDSIQSKYSKTQIK 107 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC------CEEEEECCH-------------------HHHHHHHHHHHHHCCCcEEE
Confidence 56788988 58999999999999997 788886431 24555566666666655665
Q ss_pred EEeccCC
Q 001074 654 ALQNRVG 660 (1163)
Q Consensus 654 ~~~~~v~ 660 (1163)
.+..++.
T Consensus 108 ~~~~Dl~ 114 (320)
T PLN02780 108 TVVVDFS 114 (320)
T ss_pred EEEEECC
Confidence 5544443
No 342
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=83.35 E-value=5.6 Score=47.95 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=32.2
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001074 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (1163)
Q Consensus 176 L~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~ 212 (1163)
+.+.+|+|+|+|.+|..+++.+...|. +++++|.+.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~ 235 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDP 235 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence 568899999999999999999999999 688888643
No 343
>PRK06523 short chain dehydrogenase; Provisional
Probab=83.32 E-value=2.8 Score=46.39 Aligned_cols=76 Identities=14% Similarity=0.220 Sum_probs=48.3
Q ss_pred HHhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchH-HHHHHHHHHhhCCC
Q 001074 572 KLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK-STVAASAATSINPR 649 (1163)
Q Consensus 572 kL~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~K-a~vaa~~l~~~np~ 649 (1163)
++++++|+|.| .||||.++++.|+..|. ++++++.+.-+ .+.....+...|+.... .+.+.+.+.+..+.
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~------~v~~~~r~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 77 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGA------RVVTTARSRPD--DLPEGVEFVAADLTTAEGCAAVARAVLERLGG 77 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCC------EEEEEeCChhh--hcCCceeEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 46788999999 58999999999999997 78888876432 22333334455666543 23333444444444
Q ss_pred CeEEEE
Q 001074 650 LNIEAL 655 (1163)
Q Consensus 650 ~~I~~~ 655 (1163)
+.+..+
T Consensus 78 id~vi~ 83 (260)
T PRK06523 78 VDILVH 83 (260)
T ss_pred CCEEEE
Confidence 444443
No 344
>PRK05866 short chain dehydrogenase; Provisional
Probab=83.31 E-value=3.3 Score=47.21 Aligned_cols=34 Identities=15% Similarity=0.329 Sum_probs=29.1
Q ss_pred HhcCcEEEEec-CcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 573 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 573 L~~~kVlvVGa-GglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
+.+++|+|.|+ ||||.++++.|+..|. +++++|.
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~------~Vi~~~R 72 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGA------TVVAVAR 72 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEEC
Confidence 46678999985 9999999999999997 7887764
No 345
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=83.25 E-value=2.3 Score=52.12 Aligned_cols=116 Identities=12% Similarity=0.127 Sum_probs=68.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCch--HHHHHHHHHHHh-cCCCEEEEee-
Q 001074 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKN--RALASVQKLQEL-NNAVVLSTLT- 254 (1163)
Q Consensus 179 s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~--Kaea~~~~L~eL-Np~V~V~~~~- 254 (1163)
++|.|||+|-.|..+|.||+..|. +|+++|.+.-....+... ...-|.+ .+....+.++.+ .|.+-+-...
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~----~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~ 76 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKK----AKEGNTRVKGYHTLEELVNSLKKPRKVILLIKA 76 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHh----hhhcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence 579999999999999999999998 799999755432222110 0000100 111222333333 3554443322
Q ss_pred cCCCh-------hhcCCCcEEEEecC-ChhHHHHHHHHHHhcCCCceeEEeeecc
Q 001074 255 SKLTK-------EQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRG 301 (1163)
Q Consensus 255 ~~l~~-------e~l~~fdvVI~~~~-~~~~~~~ln~~cr~~~~~IpfI~~~~~G 301 (1163)
....+ ..+..=|+||++.- .+....+..+.+.++| +.|+.+.+.|
T Consensus 77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~G--i~fldapVSG 129 (470)
T PTZ00142 77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKG--ILYLGMGVSG 129 (470)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcC--CeEEcCCCCC
Confidence 11111 12444578887664 4555666678888888 8899888877
No 346
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=83.21 E-value=0.98 Score=54.40 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=30.7
Q ss_pred cCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCc
Q 001074 575 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (1163)
Q Consensus 575 ~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~ 614 (1163)
..+|+|||+|-+||+.|-.||+.|+ +++|+|+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl------~V~LiE~rp 35 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGV------PVELYEMRP 35 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC------cEEEEEccC
Confidence 3589999999999999999999998 899999644
No 347
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=83.21 E-value=3.4 Score=49.31 Aligned_cols=76 Identities=16% Similarity=0.096 Sum_probs=52.9
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhCCCe------EEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhc-CCC-E
Q 001074 179 SNILVSGM-QGLGAEIAKNLILAGVKS------VTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN-NAV-V 249 (1163)
Q Consensus 179 s~VlIiG~-gglGsEiaKNLvlaGVg~------itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLN-p~V-~ 249 (1163)
.||.|+|+ |.+|+.+|-.|+..|+-. +.|+|- |+.+.|+++-+.-|+... |.. .
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~di-----------------D~~~~~a~g~a~DL~d~a~~~~~~ 107 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGS-----------------ERSKEALEGVAMELEDSLYPLLRE 107 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEecc-----------------CccchhhhHHHHHHHHhhhhhcCc
Confidence 58999999 999999999999999843 666654 233456666666666544 432 2
Q ss_pred EEEeecCCChhhcCCCcEEEEecC
Q 001074 250 LSTLTSKLTKEQLSDFQAVVFTDI 273 (1163)
Q Consensus 250 V~~~~~~l~~e~l~~fdvVI~~~~ 273 (1163)
+.+... +.+.+++.|+||.+..
T Consensus 108 v~i~~~--~y~~~kdaDIVVitAG 129 (387)
T TIGR01757 108 VSIGID--PYEVFEDADWALLIGA 129 (387)
T ss_pred eEEecC--CHHHhCCCCEEEECCC
Confidence 332222 4567899999999865
No 348
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=83.19 E-value=4.7 Score=41.80 Aligned_cols=99 Identities=20% Similarity=0.282 Sum_probs=54.6
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhc----CCCEEEE---
Q 001074 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN----NAVVLST--- 252 (1163)
Q Consensus 180 ~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLN----p~V~V~~--- 252 (1163)
+|.|+|+|..|+.+|.-|+..| .+++|+..+.-....++.+ ..| |.+++..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~~~~~i~~~---------------------~~n~~~~~~~~l~~~i~ 58 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEEQIEEINET---------------------RQNPKYLPGIKLPENIK 58 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHHHHHHHHHH---------------------TSETTTSTTSBEETTEE
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHHHHHHHHHh---------------------CCCCCCCCCcccCcccc
Confidence 6999999999999999999999 6899988754211111110 111 1121111
Q ss_pred eecCCChhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecce
Q 001074 253 LTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGL 302 (1163)
Q Consensus 253 ~~~~l~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~ 302 (1163)
.+.++ ++.+++.|+||++..+...+..+.++........++| .-+.|+
T Consensus 59 ~t~dl-~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii-~~~KG~ 106 (157)
T PF01210_consen 59 ATTDL-EEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIII-SATKGF 106 (157)
T ss_dssp EESSH-HHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEE-ETS-SE
T ss_pred cccCH-HHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEE-EecCCc
Confidence 11111 3467899999999877666555555443221113444 344555
No 349
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=83.18 E-value=1.7 Score=50.27 Aligned_cols=106 Identities=25% Similarity=0.361 Sum_probs=0.0
Q ss_pred CcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCccc--------ccCcCcccCcccCcccchHHHHHHHHHHhhC
Q 001074 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIE--------KSNLSRQFLFRDWNIGQAKSTVAASAATSIN 647 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie--------~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~n 647 (1163)
++|.|||+|-.|+-++..+|..|+ .+++.|...-. ..+|.|+. .-|+-+.+.+...+.++.
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~------~V~l~D~~~~~~~~~~~~i~~~l~k~~-----~~g~l~~~~~~~~l~~i~ 72 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGY------DVVLKDISPEALERALAYIEKNLEKLV-----EKGKLTEEEADAALARIT 72 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCC------ceEEEeCCHHHHHHHHHHHHHHHHHHH-----hcCCCChhhHHHHHhhcc
Q ss_pred CCCeEEEEeccCCcccccccchhhhccCCEEEEccC-chHHHHHHHhhccccccc--EEecCCCC
Q 001074 648 PRLNIEALQNRVGPETENVFDDTFWENITCVINALD-NVNARLYVDQRCLYFQKP--LLESGTLG 709 (1163)
Q Consensus 648 p~~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alD-n~~aR~~v~~~c~~~~~P--lI~sgt~G 709 (1163)
+...+.+.. ++|+||.|+= |.+..+.+=...-..-+| ++.|-|.+
T Consensus 73 ~~~~~~~l~-----------------~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs 120 (307)
T COG1250 73 PTTDLAALK-----------------DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS 120 (307)
T ss_pred ccCchhHhc-----------------cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC
No 350
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=83.11 E-value=1.7 Score=44.53 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=41.8
Q ss_pred CcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEEE
Q 001074 576 AKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 654 (1163)
Q Consensus 576 ~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~~ 654 (1163)
+.++|.| +||||-++++.|+..|- .++++++.+ ....+.+.+.+.+...+ .++..
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~-----~~v~~~~r~-----------------~~~~~~~~l~~~l~~~~--~~~~~ 56 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGA-----RVVILTSRS-----------------EDSEGAQELIQELKAPG--AKITF 56 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTT-----EEEEEEESS-----------------CHHHHHHHHHHHHHHTT--SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCc-----eEEEEeeec-----------------ccccccccccccccccc--ccccc
Confidence 3678887 89999999999999987 688877654 11234444555555433 56777
Q ss_pred EeccCC
Q 001074 655 LQNRVG 660 (1163)
Q Consensus 655 ~~~~v~ 660 (1163)
+..++.
T Consensus 57 ~~~D~~ 62 (167)
T PF00106_consen 57 IECDLS 62 (167)
T ss_dssp EESETT
T ss_pred cccccc
Confidence 765555
No 351
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.01 E-value=5.4 Score=46.01 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=29.6
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001074 178 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 211 (1163)
Q Consensus 178 ~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d 211 (1163)
..+|.|+|+|.+|+.+|++|..+|. .|+++|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 3589999999999999999999996 78999865
No 352
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=83.01 E-value=3.3 Score=47.27 Aligned_cols=89 Identities=18% Similarity=0.142 Sum_probs=0.0
Q ss_pred CcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEEEE
Q 001074 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 655 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~~~ 655 (1163)
.+|.|||+|.+|..++++|+..|. .++++|.+.- +.+.+.+.=.....+.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~------~v~~~d~~~~-------------------~~~~~~~~g~~~~~~~----- 52 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY------SLVVYDRNPE-------------------AVAEVIAAGAETASTA----- 52 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC------eEEEEcCCHH-------------------HHHHHHHCCCeecCCH-----
Q ss_pred eccCCcccccccchhhhccCCEEEEccCchHHHHHH------HhhcccccccEEecCC
Q 001074 656 QNRVGPETENVFDDTFWENITCVINALDNVNARLYV------DQRCLYFQKPLLESGT 707 (1163)
Q Consensus 656 ~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v------~~~c~~~~~PlI~sgt 707 (1163)
++..+++|+||.|+-+...-..+ -..+...++-+++.++
T Consensus 53 -------------~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st 97 (296)
T PRK11559 53 -------------KAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSS 97 (296)
T ss_pred -------------HHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCC
No 353
>PRK07063 short chain dehydrogenase; Provisional
Probab=82.91 E-value=4.7 Score=44.59 Aligned_cols=35 Identities=43% Similarity=0.616 Sum_probs=29.5
Q ss_pred HhhcCeEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 001074 175 RLFASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDE 210 (1163)
Q Consensus 175 kL~~s~VlIiG-~gglGsEiaKNLvlaGVg~itLvD~ 210 (1163)
+|.+++|+|.| .||+|.++++.|+..|. ++.++|.
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r 39 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA-AVALADL 39 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 46788999998 57999999999999997 5777763
No 354
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=82.91 E-value=6.6 Score=38.83 Aligned_cols=88 Identities=23% Similarity=0.182 Sum_probs=51.9
Q ss_pred eEEEEc-CChHHHHHHHHHHHh-CCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcC----CCEEEEe
Q 001074 180 NILVSG-MQGLGAEIAKNLILA-GVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNN----AVVLSTL 253 (1163)
Q Consensus 180 ~VlIiG-~gglGsEiaKNLvla-GVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp----~V~V~~~ 253 (1163)
||.|+| .|-+|.++++.|... .+.-+.++.... ..|+. +.+..| .-.+...
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~---------------~~g~~--------~~~~~~~~~~~~~~~~~ 57 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR---------------SAGKP--------LSEVFPHPKGFEDLSVE 57 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT---------------TTTSB--------HHHTTGGGTTTEEEBEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc---------------ccCCe--------eehhccccccccceeEe
Confidence 799999 888999999988872 222233333211 24442 233333 2233333
Q ss_pred ecCCChhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeE
Q 001074 254 TSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFI 295 (1163)
Q Consensus 254 ~~~l~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI 295 (1163)
. .+.+.+.+.|+|++|..+... ..+...+.+.| +++|
T Consensus 58 ~--~~~~~~~~~Dvvf~a~~~~~~-~~~~~~~~~~g--~~Vi 94 (121)
T PF01118_consen 58 D--ADPEELSDVDVVFLALPHGAS-KELAPKLLKAG--IKVI 94 (121)
T ss_dssp E--TSGHHHTTESEEEE-SCHHHH-HHHHHHHHHTT--SEEE
T ss_pred e--cchhHhhcCCEEEecCchhHH-HHHHHHHhhCC--cEEE
Confidence 3 555667999999999865444 44555557777 6555
No 355
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=82.85 E-value=1.1 Score=57.44 Aligned_cols=170 Identities=15% Similarity=0.161 Sum_probs=87.6
Q ss_pred CcEEEEecCcchHHHHHHHH-HcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHH-HHHHHHh--hCCCCe
Q 001074 576 AKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTV-AASAATS--INPRLN 651 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa-~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~v-aa~~l~~--~np~~~ 651 (1163)
++|.|||+|.+|+.++-.+| ..|+ .++++|.+.=. |.| +..+..- +.+.+.+ +.+. .
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~------~V~l~d~~~~~---l~~---------~~~~~~~~l~~~~~~~~~~~~-~ 365 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGI------PVRIKDINPQG---INN---------ALKYAWKLLDKGVKRRHMTPA-E 365 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCC------eEEEEeCCHHH---HHH---------HHHHHHHHHHHHHHcCCCCHH-H
Confidence 58999999999999999998 4898 99999976321 111 0111110 0111110 0000 0
Q ss_pred EEEEeccCCcccccccchhhhccCCEEEEccC-chHHHHHHHhhcccccc--cEEecCCCCcccc-eEEEeCCcccccCC
Q 001074 652 IEALQNRVGPETENVFDDTFWENITCVINALD-NVNARLYVDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHLTENYGA 727 (1163)
Q Consensus 652 I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alD-n~~aR~~v~~~c~~~~~--PlI~sgt~G~~G~-v~viip~~t~~y~~ 727 (1163)
......++...+. + +-++++|+||.|+- +.+.++.+-...-..-. -+|-+-|.+..-. ..-.+.+-..+.+.
T Consensus 366 ~~~~~~~i~~~~~--~--~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~ 441 (699)
T TIGR02440 366 RDNQMALITGTTD--Y--RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGL 441 (699)
T ss_pred HHHHHcCeEEeCC--h--HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEE
Confidence 0000011111111 1 23589999999975 66666644444333322 3555555543211 00001111112222
Q ss_pred C-CCCCCCCCCCccccCCCCChhhHHHHHHHHhhhhccCChhhh
Q 001074 728 S-RDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEV 770 (1163)
Q Consensus 728 ~-~dp~~~~~p~Ct~~~fP~~~~Hci~wAr~~F~~lF~~~~~~~ 770 (1163)
+ -.|+. ..|+.-+-.-|...+.+++++.+++.. .++.|-.+
T Consensus 442 HffnP~~-~~~lVEvv~g~~T~~~~~~~~~~~~~~-~gk~pv~v 483 (699)
T TIGR02440 442 HYFSPVE-KMPLVEVIPHAGTSEQTIATTVALAKK-QGKTPIVV 483 (699)
T ss_pred ecCCccc-cCceEEEeCCCCCCHHHHHHHHHHHHH-cCCeEEEE
Confidence 1 13333 346666667788889999999997766 57766544
No 356
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=82.83 E-value=1.1 Score=51.86 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=29.3
Q ss_pred cCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 575 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 575 ~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
..||+|+|+||+|+-++-.|+++|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~------~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL------PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC------CeEEEEec
Confidence 4589999999999999999999996 78888764
No 357
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=82.80 E-value=0.61 Score=57.66 Aligned_cols=108 Identities=15% Similarity=0.215 Sum_probs=65.2
Q ss_pred HHHhcCcEEEEecCcchHHHHHHHHHc-----ccccCC-CccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHH
Q 001074 571 KKLEDAKVFIVGSGALGCEFLKNVALM-----GVSCGN-QGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAT 644 (1163)
Q Consensus 571 ~kL~~~kVlvVGaGglGce~lknLa~~-----Gv~~~~-~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~ 644 (1163)
.+|.+.||+++|||+-|.-+++.|+.+ |++-.+ ..+|.++|.+=+-... | .+++-..|...|..
T Consensus 317 ~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~--r-----~~~l~~~k~~fa~~--- 386 (581)
T PLN03129 317 GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKS--R-----KDSLQPFKKPFAHD--- 386 (581)
T ss_pred CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCC--C-----CccChHHHHHHHhh---
Confidence 578899999999999999999999985 552111 2589999987442211 1 11144455554443
Q ss_pred hhCCCCeEEEEeccCCcccccccchhhhcc--CCEEEEccC--chHHHHHHHhhcccccccEEec
Q 001074 645 SINPRLNIEALQNRVGPETENVFDDTFWEN--ITCVINALD--NVNARLYVDQRCLYFQKPLLES 705 (1163)
Q Consensus 645 ~~np~~~I~~~~~~v~~~~e~~~~~~f~~~--~DvVi~alD--n~~aR~~v~~~c~~~~~PlI~s 705 (1163)
.+.. . .+ .+-++. .|++|-+-- +.=....|..++.....|+|.+
T Consensus 387 --~~~~---------~----~L--~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFa 434 (581)
T PLN03129 387 --HEPG---------A----SL--LEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFA 434 (581)
T ss_pred --cccC---------C----CH--HHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 1110 0 01 123344 677766552 4555667777777777788753
No 358
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.79 E-value=7.7 Score=44.27 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=29.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001074 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (1163)
Q Consensus 179 s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~ 212 (1163)
++|.|||+|-+|..+|.+|+.+|. .++++|.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence 479999999999999999999996 799998754
No 359
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.72 E-value=4.4 Score=49.03 Aligned_cols=94 Identities=21% Similarity=0.167 Sum_probs=57.9
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 001074 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (1163)
Q Consensus 176 L~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~ 255 (1163)
+++++|+|+|.|++|..+|+.|...|. ++++.|.+.-.. ....+.|.+.. +.+. ..
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~~~~~-------------------~~~~~~l~~~g--~~~~--~~ 58 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGKPFSE-------------------NPEAQELLEEG--IKVI--CG 58 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCCccc-------------------hhHHHHHHhcC--CEEE--eC
Confidence 467899999999999999999999997 688888543110 11223444432 3332 22
Q ss_pred CCChhhcCC-CcEEEEecCChhHHHHHHHHHHhcCCCceeEE
Q 001074 256 KLTKEQLSD-FQAVVFTDISLDKAIEFDDFCHNHQPAISFIK 296 (1163)
Q Consensus 256 ~l~~e~l~~-fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~ 296 (1163)
....+.+.. +|+||.+..=.. ...+-+.+++.+ +|++.
T Consensus 59 ~~~~~~~~~~~d~vV~s~gi~~-~~~~~~~a~~~~--i~v~~ 97 (447)
T PRK02472 59 SHPLELLDEDFDLMVKNPGIPY-TNPMVEKALEKG--IPIIT 97 (447)
T ss_pred CCCHHHhcCcCCEEEECCCCCC-CCHHHHHHHHCC--CcEEe
Confidence 222233343 898888663111 223455667888 88874
No 360
>PRK05875 short chain dehydrogenase; Provisional
Probab=82.71 E-value=3.7 Score=45.85 Aligned_cols=35 Identities=14% Similarity=0.343 Sum_probs=29.9
Q ss_pred HHhcCcEEEEec-CcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 572 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 572 kL~~~kVlvVGa-GglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
.+.+++++|.|+ |+||.++++.|+..|. ++++++.
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~------~V~~~~r 39 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA------AVMIVGR 39 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC------eEEEEeC
Confidence 366789999995 8999999999999997 6777764
No 361
>PRK08655 prephenate dehydrogenase; Provisional
Probab=82.69 E-value=5.3 Score=48.56 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=54.9
Q ss_pred cEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEEEE
Q 001074 577 KVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 655 (1163)
Q Consensus 577 kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~~~ 655 (1163)
+|.||| +|++|..+++.|...|. +++++|.+.- ++..++. +.. + ..
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~------~V~v~~r~~~-------------------~~~~~a~---~~g--v--~~- 48 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF------EVIVTGRDPK-------------------KGKEVAK---ELG--V--EY- 48 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC------EEEEEECChH-------------------HHHHHHH---HcC--C--ee-
Confidence 799998 89999999999999986 7888875321 1111111 111 1 11
Q ss_pred eccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcc--cccccEEecCC
Q 001074 656 QNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCL--YFQKPLLESGT 707 (1163)
Q Consensus 656 ~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~--~~~~PlI~sgt 707 (1163)
..+. .+...++|+||.|+-....+..+..... ..+..+++.++
T Consensus 49 ----~~~~-----~e~~~~aDvVIlavp~~~~~~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 49 ----ANDN-----IDAAKDADIVIISVPINVTEDVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred ----ccCH-----HHHhccCCEEEEecCHHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 1111 2345688999999876666666655432 34556777775
No 362
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=82.62 E-value=6.4 Score=44.19 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=26.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCC--CeEEEEeC
Q 001074 179 SNILVSGMQGLGAEIAKNLILAGV--KSVTLHDE 210 (1163)
Q Consensus 179 s~VlIiG~gglGsEiaKNLvlaGV--g~itLvD~ 210 (1163)
.+|.|||+|.+|..++..|...|. ..++++|.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r 36 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDP 36 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcC
Confidence 479999999999999999999984 35666663
No 363
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=82.41 E-value=1.2 Score=51.76 Aligned_cols=94 Identities=18% Similarity=0.223 Sum_probs=58.5
Q ss_pred HHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCC
Q 001074 570 QKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPR 649 (1163)
Q Consensus 570 q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~ 649 (1163)
-..+.+++|.++|+|.||.++++.|-..| ..+.. ++ |+ -..++. +. +.+..
T Consensus 157 g~~~~gK~vgilG~G~IG~~ia~rL~~Fg-------~~i~y-------~~--r~-------~~~~~~--~~----~~~~~ 207 (336)
T KOG0069|consen 157 GYDLEGKTVGILGLGRIGKAIAKRLKPFG-------CVILY-------HS--RT-------QLPPEE--AY----EYYAE 207 (336)
T ss_pred cccccCCEEEEecCcHHHHHHHHhhhhcc-------ceeee-------ec--cc-------CCchhh--HH----Hhccc
Confidence 35788999999999999999999999844 22221 11 11 111111 11 11111
Q ss_pred CeEEEEeccCCcccccccchhhhccCC-EEEEccCchHHHHHHHhhcccccc---cEEecCC
Q 001074 650 LNIEALQNRVGPETENVFDDTFWENIT-CVINALDNVNARLYVDQRCLYFQK---PLLESGT 707 (1163)
Q Consensus 650 ~~I~~~~~~v~~~~e~~~~~~f~~~~D-vVi~alDn~~aR~~v~~~c~~~~~---PlI~sgt 707 (1163)
. +++ ++++.+.| +|++|-.+.++|-.+|+.....-+ -+|+.+-
T Consensus 208 --------~-----~d~--~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aR 254 (336)
T KOG0069|consen 208 --------F-----VDI--EELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTAR 254 (336)
T ss_pred --------c-----cCH--HHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccc
Confidence 1 111 57788999 566777899999999988766544 3565443
No 364
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.38 E-value=4.1 Score=44.27 Aligned_cols=34 Identities=29% Similarity=0.419 Sum_probs=28.2
Q ss_pred HhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEe-cC
Q 001074 573 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTIT-DD 612 (1163)
Q Consensus 573 L~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~iv-D~ 612 (1163)
|.+++++|+| .|+||.++++.|+..|. +++++ +.
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~------~v~~~~~r 38 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGA------KVVIAYDI 38 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEcCC
Confidence 6678999998 59999999999999998 56655 53
No 365
>PLN02253 xanthoxin dehydrogenase
Probab=82.36 E-value=3.1 Score=46.69 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=29.9
Q ss_pred HHhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 572 KLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 572 kL~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
++.+++++|.| +|+||.++++.|+..|. +++++|.
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~------~v~~~~~ 50 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGA------KVCIVDL 50 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCC------EEEEEeC
Confidence 46678899998 78999999999999997 7888764
No 366
>PRK08291 ectoine utilization protein EutC; Validated
Probab=82.36 E-value=4.6 Score=47.21 Aligned_cols=75 Identities=19% Similarity=0.158 Sum_probs=53.8
Q ss_pred cCeEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 001074 178 ASNILVSGMQGLGAEIAKNLIL-AGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (1163)
Q Consensus 178 ~s~VlIiG~gglGsEiaKNLvl-aGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~ 256 (1163)
.++|+|+|+|+.|...+..|.. .|+..++|++.+ ..|++..++++++.. .+.+.... +
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~-------------------~~~a~~l~~~~~~~~-g~~v~~~~-d 190 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARD-------------------AAKAEAYAADLRAEL-GIPVTVAR-D 190 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHhhcc-CceEEEeC-C
Confidence 4689999999999999999985 578999998742 337777777776432 24443332 1
Q ss_pred CChhhcCCCcEEEEecCC
Q 001074 257 LTKEQLSDFQAVVFTDIS 274 (1163)
Q Consensus 257 l~~e~l~~fdvVI~~~~~ 274 (1163)
-++.+.++|+||.|+..
T Consensus 191 -~~~al~~aDiVi~aT~s 207 (330)
T PRK08291 191 -VHEAVAGADIIVTTTPS 207 (330)
T ss_pred -HHHHHccCCEEEEeeCC
Confidence 13557789999988754
No 367
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=82.35 E-value=3 Score=51.08 Aligned_cols=116 Identities=14% Similarity=0.105 Sum_probs=68.4
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHh-cCCCEEEEeecC-C
Q 001074 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQEL-NNAVVLSTLTSK-L 257 (1163)
Q Consensus 180 ~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eL-Np~V~V~~~~~~-l 257 (1163)
.|.|||+|..|..+|.||+..|. +++++|.+.-....+...+.-. -+-.-+....+..+.+ .|.+-+...+.. .
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~~~g---~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~ 76 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEHAKG---KKIVGAYSIEEFVQSLERPRKIMLMVKAGAP 76 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhccCC---CCceecCCHHHHHhhcCCCCEEEEECCCcHH
Confidence 48899999999999999999998 7999987654433332210000 0000111122222233 355555444331 1
Q ss_pred Ch-------hhcCCCcEEEEecC-ChhHHHHHHHHHHhcCCCceeEEeeecc
Q 001074 258 TK-------EQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRG 301 (1163)
Q Consensus 258 ~~-------e~l~~fdvVI~~~~-~~~~~~~ln~~cr~~~~~IpfI~~~~~G 301 (1163)
.+ ..+..=++||++.- .+....+..+.+.+++ +.|+.+.+.|
T Consensus 77 v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~g--i~fvdapVsG 126 (467)
T TIGR00873 77 VDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKG--ILFVGSGVSG 126 (467)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcC--CEEEcCCCCC
Confidence 11 12344478887764 4555555566788888 8899888887
No 368
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=82.34 E-value=7.4 Score=44.29 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=48.6
Q ss_pred eEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 001074 180 NILVSGMQGLGAEIAKNLILAGV---KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (1163)
Q Consensus 180 ~VlIiG~gglGsEiaKNLvlaGV---g~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~ 256 (1163)
+|.|||+|.+|..+++.|...|. .++.+++.+.- .++ +.+....+.+.+. .+
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~------------------~~~----~~l~~~~~~~~~~---~~ 57 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKN------------------EHF----NQLYDKYPTVELA---DN 57 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcH------------------HHH----HHHHHHcCCeEEe---CC
Confidence 69999999999999999999983 46777664210 121 1222222333221 11
Q ss_pred CChhhcCCCcEEEEecCChhHHHHHHHH
Q 001074 257 LTKEQLSDFQAVVFTDISLDKAIEFDDF 284 (1163)
Q Consensus 257 l~~e~l~~fdvVI~~~~~~~~~~~ln~~ 284 (1163)
..+.+.++|+||+|..+......+.++
T Consensus 58 -~~e~~~~aDvVilavpp~~~~~vl~~l 84 (277)
T PRK06928 58 -EAEIFTKCDHSFICVPPLAVLPLLKDC 84 (277)
T ss_pred -HHHHHhhCCEEEEecCHHHHHHHHHHH
Confidence 124567899999998765544444444
No 369
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=82.32 E-value=3.2 Score=50.23 Aligned_cols=109 Identities=17% Similarity=0.095 Sum_probs=73.8
Q ss_pred eEEEEcCChHHH-HHHHHHHH----hCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEee
Q 001074 180 NILVSGMQGLGA-EIAKNLIL----AGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (1163)
Q Consensus 180 ~VlIiG~gglGs-EiaKNLvl----aGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~ 254 (1163)
||.|||+|++-+ ++.+.|+. .++++|+|+|-|. ...|.. -...+.+.+.+.++..+|+..+
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~------------v~~~~~~~~~~~~~~~~v~~t~ 67 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEI------------VGALAKRMVKKAGLPIKVHLTT 67 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHH------------HHHHHHHHHHhhCCCeEEEEeC
Confidence 799999999865 77777776 5678999999763 222210 1233445556777777777765
Q ss_pred cCCChhhcCCCcEEEEecC--ChhHHHHHHHHHHhcCCCceeEEeeecceeEEEEE
Q 001074 255 SKLTKEQLSDFQAVVFTDI--SLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFC 308 (1163)
Q Consensus 255 ~~l~~e~l~~fdvVI~~~~--~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf~ 308 (1163)
+ -++.+.+.|+||.+.. ..+.+..-.++..++| + +-..+.|..|..+.
T Consensus 68 d--~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~G--i--~gqET~G~GG~~~a 117 (419)
T cd05296 68 D--RREALEGADFVFTQIRVGGLEARALDERIPLKHG--V--IGQETTGAGGFAKA 117 (419)
T ss_pred C--HHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcC--C--ccccCCCcchHHHh
Confidence 4 3467889999998864 4455555566777777 3 45788888886553
No 370
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=82.30 E-value=3.2 Score=46.77 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=29.0
Q ss_pred hcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 574 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 574 ~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
.+.||.+||+|.+|+.+++.|...|... ..+++++|.+
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~--~~~i~~~~~~ 39 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIG--KENIYYHTPS 39 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCC--cceEEEECCC
Confidence 3568999999999999999999988521 1247776653
No 371
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=82.26 E-value=4.1 Score=45.63 Aligned_cols=90 Identities=11% Similarity=0.151 Sum_probs=52.0
Q ss_pred cEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEEEEe
Q 001074 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 656 (1163)
Q Consensus 577 kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~~~~ 656 (1163)
+|.+||+|.+|..+++.|...|... ..+.+.|.+ ..|++.+++ ..+.+.+ .
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~---~~i~v~~r~-------------------~~~~~~l~~----~~~~~~~--~- 52 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADV---SEIIVSPRN-------------------AQIAARLAE----RFPKVRI--A- 52 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCCh---heEEEECCC-------------------HHHHHHHHH----HcCCceE--e-
Confidence 6999999999999999999988610 223444311 123332222 2222221 1
Q ss_pred ccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEe
Q 001074 657 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLE 704 (1163)
Q Consensus 657 ~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~ 704 (1163)
.+. .+...+.|+|+-|+-....+..+.......++.+|+
T Consensus 53 ----~~~-----~~~~~~aDvVilav~p~~~~~vl~~l~~~~~~~vis 91 (258)
T PRK06476 53 ----KDN-----QAVVDRSDVVFLAVRPQIAEEVLRALRFRPGQTVIS 91 (258)
T ss_pred ----CCH-----HHHHHhCCEEEEEeCHHHHHHHHHHhccCCCCEEEE
Confidence 111 234568999999998655666665543334444554
No 372
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=82.23 E-value=4.6 Score=47.57 Aligned_cols=103 Identities=16% Similarity=0.101 Sum_probs=0.0
Q ss_pred cEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEEEEe
Q 001074 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 656 (1163)
Q Consensus 577 kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~~~~ 656 (1163)
+|+|+|||.||.-.+..+.+.|. .+|+++|.+.- |.+.|++.. ...+....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga-----~~Viv~d~~~~-------------------Rl~~A~~~~-----g~~~~~~~ 221 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGA-----SVVIVVDRSPE-------------------RLELAKEAG-----GADVVVNP 221 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC-----ceEEEeCCCHH-------------------HHHHHHHhC-----CCeEeecC
Q ss_pred ccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCC
Q 001074 657 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLG 709 (1163)
Q Consensus 657 ~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G 709 (1163)
..- ...+.++...--.++|+||+|+.+..+-....+.++..+.-.+-+-..+
T Consensus 222 ~~~-~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 222 SED-DAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred ccc-cHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccCC
No 373
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=82.20 E-value=4 Score=46.24 Aligned_cols=90 Identities=20% Similarity=0.175 Sum_probs=52.7
Q ss_pred CcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEEEE
Q 001074 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 655 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~~~ 655 (1163)
.||.|||+|.+|..+++.|...+... .-+.++|.+ ..|++.+++ ... +..+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~---elv~v~d~~-------------------~~~a~~~a~---~~~----~~~~ 52 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINA---ELYAFYDRN-------------------LEKAENLAS---KTG----AKAC 52 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCe---EEEEEECCC-------------------HHHHHHHHH---hcC----CeeE
Confidence 37999999999999999998764200 234455544 123333332 111 1111
Q ss_pred eccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEec
Q 001074 656 QNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLES 705 (1163)
Q Consensus 656 ~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~s 705 (1163)
.+. ++++.+.|+|+.|+-....+. +-..+.+.++.++..
T Consensus 53 -----~~~-----~ell~~~DvVvi~a~~~~~~~-~~~~al~~Gk~Vvv~ 91 (265)
T PRK13304 53 -----LSI-----DELVEDVDLVVECASVNAVEE-VVPKSLENGKDVIIM 91 (265)
T ss_pred -----CCH-----HHHhcCCCEEEEcCChHHHHH-HHHHHHHcCCCEEEE
Confidence 111 234478999999986544444 444566778887753
No 374
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=82.16 E-value=2.1 Score=47.24 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=31.1
Q ss_pred HhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecCCc
Q 001074 573 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (1163)
Q Consensus 573 L~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~D~ 614 (1163)
+.+++++|.| .|+||.++++.|+..|. +++++|.+.
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~------~v~~~~r~~ 40 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGA------RVVIADIKP 40 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEcCCH
Confidence 5678899998 59999999999999997 788887654
No 375
>PRK07062 short chain dehydrogenase; Provisional
Probab=82.14 E-value=6.8 Score=43.44 Aligned_cols=59 Identities=24% Similarity=0.284 Sum_probs=41.0
Q ss_pred hhcCeEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEee
Q 001074 176 LFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (1163)
Q Consensus 176 L~~s~VlIiG~-gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~ 254 (1163)
|+++.++|.|+ +|+|.++++.|+..|. ++.+++.+. .+.+.+.+.+.+..+..++....
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 65 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDE-------------------ERLASAEARLREKFPGARLLAAR 65 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEE
Confidence 56788999986 6899999999999998 477776432 24444555666655554554443
No 376
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.11 E-value=4.2 Score=47.22 Aligned_cols=31 Identities=29% Similarity=0.368 Sum_probs=27.6
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001074 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 211 (1163)
Q Consensus 180 ~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d 211 (1163)
+|.|+|+|.+|+.++..|..+|. .+++++.+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 69999999999999999999994 68888764
No 377
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=82.10 E-value=8.2 Score=48.33 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=27.0
Q ss_pred hhcCeEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 001074 176 LFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDE 210 (1163)
Q Consensus 176 L~~s~VlIiG~-gglGsEiaKNLvlaGVg~itLvD~ 210 (1163)
..+..|+|.|+ |++|..+++.|+..|. +|++++.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~R 112 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVR 112 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeC
Confidence 34568899985 8999999999999996 5666543
No 378
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=82.07 E-value=1.1 Score=53.93 Aligned_cols=36 Identities=31% Similarity=0.577 Sum_probs=32.8
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
.+.+.+|+|+|+|.+|..+++.|+..|+ .+++++|.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~-----~~V~v~~r 212 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGV-----GKILIANR 212 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCC-----CEEEEEeC
Confidence 4788999999999999999999999998 78998865
No 379
>PRK05442 malate dehydrogenase; Provisional
Probab=81.99 E-value=2.1 Score=49.96 Aligned_cols=74 Identities=12% Similarity=0.160 Sum_probs=47.9
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhCC-C-----eEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhc----CC
Q 001074 179 SNILVSGM-QGLGAEIAKNLILAGV-K-----SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN----NA 247 (1163)
Q Consensus 179 s~VlIiG~-gglGsEiaKNLvlaGV-g-----~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLN----p~ 247 (1163)
.+|.|+|+ |.+|+.+|-.|+..|+ + +|.|+|-.. + +.|+++.+.-|+... +.
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~---------------~--~~~~~g~a~Dl~~~~~~~~~~ 67 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPP---------------A--LKALEGVVMELDDCAFPLLAG 67 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCC---------------c--ccccceeehhhhhhhhhhcCC
Confidence 48999998 9999999999999887 4 699998521 0 112222222233222 33
Q ss_pred CEEEEeecCCChhhcCCCcEEEEecC
Q 001074 248 VVLSTLTSKLTKEQLSDFQAVVFTDI 273 (1163)
Q Consensus 248 V~V~~~~~~l~~e~l~~fdvVI~~~~ 273 (1163)
+.+. . =+.+.+.+.|+||.|..
T Consensus 68 ~~i~--~--~~y~~~~daDiVVitaG 89 (326)
T PRK05442 68 VVIT--D--DPNVAFKDADVALLVGA 89 (326)
T ss_pred cEEe--c--ChHHHhCCCCEEEEeCC
Confidence 4333 2 23467889999998765
No 380
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.82 E-value=5 Score=48.73 Aligned_cols=124 Identities=15% Similarity=0.150 Sum_probs=72.4
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecCC
Q 001074 178 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL 257 (1163)
Q Consensus 178 ~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~l 257 (1163)
...|+|+|+|+.|..+|+-|...|. .++..|...- .. ..+.|.+.++.+.+.. ...
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~~-----------------~~----~~~~l~~~~~g~~~~~--~~~ 61 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDSREQ-----------------PP----GLDTLAREFPDVELRC--GGF 61 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeCCCC-----------------ch----hHHHHHhhcCCcEEEe--CCC
Confidence 4579999999999999999999997 7888884320 00 1123554444554443 333
Q ss_pred ChhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEcCCceEEEcCCCCCCcceeeccc
Q 001074 258 TKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGEDPHTGIIASI 332 (1163)
Q Consensus 258 ~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf~d~g~~f~v~d~~ge~p~~~~I~~I 332 (1163)
+.+.+.++|+||.+..=... ...-..+++++ +|++.-. .+.+.+. -.+--.|.=++|....+.+|.+|
T Consensus 62 ~~~~~~~~d~vV~sp~i~~~-~p~~~~a~~~~--i~i~~~~--el~~~~~--~~~~I~VTGT~GKTTTt~li~~i 129 (448)
T PRK03803 62 DCELLVQASEIIISPGLALD-TPALRAAAAMG--IEVIGDI--ELFAREA--KAPVIAITGSNGKSTVTTLVGEM 129 (448)
T ss_pred ChHHhcCCCEEEECCCCCCC-CHHHHHHHHCC--CcEEEHH--HHHHHhc--CCCEEEEECCCcHHHHHHHHHHH
Confidence 45667789999887641111 22334557788 8887411 1112221 11223333456666666666665
No 381
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=81.79 E-value=3.5 Score=46.93 Aligned_cols=87 Identities=18% Similarity=0.140 Sum_probs=0.0
Q ss_pred hcCcEEEEecCcchHHHHHHHHHc--ccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHH--hhCCC
Q 001074 574 EDAKVFIVGSGALGCEFLKNVALM--GVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAT--SINPR 649 (1163)
Q Consensus 574 ~~~kVlvVGaGglGce~lknLa~~--Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~--~~np~ 649 (1163)
...||.|||+|.+|..++++|... |+ .-..+.|.+.= |++.+++... ....+
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~-----el~aV~dr~~~-------------------~a~~~a~~~g~~~~~~~ 60 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGL-----TLSAVAVRDPQ-------------------RHADFIWGLRRPPPVVP 60 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCe-----EEEEEECCCHH-------------------HHHHHHHhcCCCcccCC
Q ss_pred CeEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEE
Q 001074 650 LNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLL 703 (1163)
Q Consensus 650 ~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI 703 (1163)
+ ++++.+.|+|+.|+-+...+.+. ..+.+.+++++
T Consensus 61 ~------------------eell~~~D~Vvi~tp~~~h~e~~-~~aL~aGk~Vi 95 (271)
T PRK13302 61 L------------------DQLATHADIVVEAAPASVLRAIV-EPVLAAGKKAI 95 (271)
T ss_pred H------------------HHHhcCCCEEEECCCcHHHHHHH-HHHHHcCCcEE
No 382
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=81.71 E-value=9.8 Score=44.28 Aligned_cols=94 Identities=22% Similarity=0.247 Sum_probs=0.0
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCE----------
Q 001074 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVV---------- 249 (1163)
Q Consensus 180 ~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~---------- 249 (1163)
+|+|+|+|.+|+.+|..|..+| .+++++| |.... +.+++..-.+.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G-~~V~~~~-----------------------r~~~~-~~~~~~g~~~~~~~~~~~~~~ 58 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAG-ADVTLIG-----------------------RARIG-DELRAHGLTLTDYRGRDVRVP 58 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcC-CcEEEEe-----------------------cHHHH-HHHHhcCceeecCCCcceecc
Q ss_pred ---EEEeecCCChhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecce
Q 001074 250 ---LSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGL 302 (1163)
Q Consensus 250 ---V~~~~~~l~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~ 302 (1163)
+...... +.+..+|+||+|..+......+.++.....+...++.. +.|+
T Consensus 59 ~~~~~~~~~~---~~~~~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~-~nG~ 110 (341)
T PRK08229 59 PSAIAFSTDP---AALATADLVLVTVKSAATADAAAALAGHARPGAVVVSF-QNGV 110 (341)
T ss_pred cceeEeccCh---hhccCCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEe-CCCC
No 383
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=81.71 E-value=6.6 Score=40.05 Aligned_cols=59 Identities=20% Similarity=0.384 Sum_probs=41.6
Q ss_pred CeEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 001074 179 SNILVSG-MQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (1163)
Q Consensus 179 s~VlIiG-~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~ 256 (1163)
+.|+|.| .+|+|.++++.|+..|-..+.++... .-..+++...+.+.+.+ .++.....+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~-----------------~~~~~~~~l~~~l~~~~--~~~~~~~~D 60 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS-----------------EDSEGAQELIQELKAPG--AKITFIECD 60 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS-----------------CHHHHHHHHHHHHHHTT--SEEEEEESE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec-----------------ccccccccccccccccc--ccccccccc
Confidence 3678887 88999999999999999899988764 01235555666666444 555555443
No 384
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=81.68 E-value=11 Score=43.70 Aligned_cols=32 Identities=28% Similarity=0.225 Sum_probs=29.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 001074 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 210 (1163)
Q Consensus 179 s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~ 210 (1163)
.+|.|||+|-+|+-+|-.|+..|...++++|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 48999999999999999999999878999996
No 385
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=81.68 E-value=6.5 Score=44.26 Aligned_cols=34 Identities=12% Similarity=0.228 Sum_probs=27.7
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCC---CeEEEEeC
Q 001074 177 FASNILVSGMQGLGAEIAKNLILAGV---KSVTLHDE 210 (1163)
Q Consensus 177 ~~s~VlIiG~gglGsEiaKNLvlaGV---g~itLvD~ 210 (1163)
.+.+|.|||+|-+|+.+++.|..+|+ .++.++|.
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~ 38 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTP 38 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECC
Confidence 44689999999999999999999984 23666654
No 386
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=81.68 E-value=2.3 Score=54.89 Aligned_cols=169 Identities=16% Similarity=0.168 Sum_probs=85.3
Q ss_pred CcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccC----cCcccCcccCcccchHHHHHHHHHHhhCCCCe
Q 001074 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSN----LSRQFLFRDWNIGQAKSTVAASAATSINPRLN 651 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SN----LnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~ 651 (1163)
++|.|||+|..|+.++-.+|..|+ .++++|.+.=.... +.+. +-..-+-|+...+.+.+.+.++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~------~V~l~d~~~~~l~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~i----- 381 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT------PIVMKDINQHSLDLGLTEAAKL-LNKQVERGRITPAKMAGVLNGI----- 381 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC------eEEEEeCCHHHHHHHHHHHHHH-HHHHHHcCCCChhhHHHHHhCe-----
Confidence 479999999999999999999999 99999976432211 1000 0000011111111122222121
Q ss_pred EEEEeccCCcccccccchhhhccCCEEEEccC-chHHHHHHHhhcccccc--cEEecCCCCcccc-eEEEeCCcccccCC
Q 001074 652 IEALQNRVGPETENVFDDTFWENITCVINALD-NVNARLYVDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHLTENYGA 727 (1163)
Q Consensus 652 I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alD-n~~aR~~v~~~c~~~~~--PlI~sgt~G~~G~-v~viip~~t~~y~~ 727 (1163)
+.. ++ .+-++++|+||.|+- +.+.++.+-...-..-. -++-+-|.+.--. ..-.+++-.-+.+.
T Consensus 382 -~~~-------~~----~~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~ 449 (714)
T TIGR02437 382 -TPT-------LS----YAGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGM 449 (714)
T ss_pred -EEe-------CC----HHHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEE
Confidence 111 11 122589999999975 66666654444433322 2455555443211 00001110011111
Q ss_pred C-CCCCCCCCCCccccCCCCChhhHHHHHHHHhhhhccCChhhh
Q 001074 728 S-RDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEV 770 (1163)
Q Consensus 728 ~-~dp~~~~~p~Ct~~~fP~~~~Hci~wAr~~F~~lF~~~~~~~ 770 (1163)
+ -.|+. ..|+--+-.-+...+.++..+.++... .++.|-.+
T Consensus 450 Hff~P~~-~~~lvEvv~g~~Ts~~~~~~~~~~~~~-lgk~pv~v 491 (714)
T TIGR02437 450 HFFNPVH-RMPLVEVIRGEKSSDETIATVVAYASK-MGKTPIVV 491 (714)
T ss_pred ecCCCcc-cCceEeecCCCCCCHHHHHHHHHHHHH-cCCEEEEe
Confidence 1 12333 234433445577778888888887764 46655444
No 387
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=81.62 E-value=5.6 Score=49.28 Aligned_cols=33 Identities=33% Similarity=0.337 Sum_probs=29.7
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001074 178 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 211 (1163)
Q Consensus 178 ~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d 211 (1163)
-++|.|||+|..|+.||.+|+.+|. .++++|.+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~ 37 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIR 37 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 4679999999999999999999997 78999864
No 388
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=81.56 E-value=4.3 Score=45.74 Aligned_cols=72 Identities=21% Similarity=0.209 Sum_probs=47.4
Q ss_pred EEEEcC-ChHHHHHHHHHHHhC--C-CeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhc---CCCEEEEe
Q 001074 181 ILVSGM-QGLGAEIAKNLILAG--V-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN---NAVVLSTL 253 (1163)
Q Consensus 181 VlIiG~-gglGsEiaKNLvlaG--V-g~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLN---p~V~V~~~ 253 (1163)
|.|||+ |.+|..+|..|+..| . .+++|+|.+. .|++.....|+... +..+++..
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~i~~~ 61 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE-------------------EKLKGVAMDLQDAVEPLADIKVSIT 61 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc-------------------ccchHHHHHHHHhhhhccCcEEEEC
Confidence 579999 999999999999998 4 6899999533 12222333343332 23455542
Q ss_pred ecCCChhhcCCCcEEEEecC
Q 001074 254 TSKLTKEQLSDFQAVVFTDI 273 (1163)
Q Consensus 254 ~~~l~~e~l~~fdvVI~~~~ 273 (1163)
+ ++ .+.+.+.|+||.+..
T Consensus 62 ~-d~-~~~~~~aDiVv~t~~ 79 (263)
T cd00650 62 D-DP-YEAFKDADVVIITAG 79 (263)
T ss_pred C-ch-HHHhCCCCEEEECCC
Confidence 2 11 456789999999653
No 389
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=81.55 E-value=4.4 Score=48.99 Aligned_cols=94 Identities=14% Similarity=0.186 Sum_probs=60.3
Q ss_pred HhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeE
Q 001074 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 652 (1163)
Q Consensus 573 L~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I 652 (1163)
+...+++|+|+|.+|..+++.|...|. .++++|.|.= +. +.+++..+++.
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~------~v~vid~~~~-------------------~~----~~~~~~~~~~~- 278 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY------SVKLIERDPE-------------------RA----EELAEELPNTL- 278 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC------eEEEEECCHH-------------------HH----HHHHHHCCCCe-
Confidence 356899999999999999999999997 8899976531 11 11222222322
Q ss_pred EEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhccccc
Q 001074 653 EALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQ 699 (1163)
Q Consensus 653 ~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~ 699 (1163)
.+...... ...+...-.+++|.||.++++...-..+...|..++
T Consensus 279 -~i~gd~~~--~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~ 322 (453)
T PRK09496 279 -VLHGDGTD--QELLEEEGIDEADAFIALTNDDEANILSSLLAKRLG 322 (453)
T ss_pred -EEECCCCC--HHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhC
Confidence 23332221 112223445789999999998777666666665554
No 390
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=81.55 E-value=1.5 Score=52.18 Aligned_cols=133 Identities=19% Similarity=0.203 Sum_probs=73.8
Q ss_pred hcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHH--HHHHHhhCCCCe
Q 001074 574 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVA--ASAATSINPRLN 651 (1163)
Q Consensus 574 ~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~va--a~~l~~~np~~~ 651 (1163)
...||.|+|+|.||-.+++.|...+. +...|+.|. |.-+...+..-+.|.. --|+.+.++- ......++ +-+
T Consensus 59 ~~~kVaInGfGrIGR~vlr~l~~~~~---~~~evvaIN-d~~~~~~~ayLl~yDS-~hG~f~~~v~~~~g~~l~v~-gk~ 132 (395)
T PLN03096 59 AKIKVAINGFGRIGRNFLRCWHGRKD---SPLDVVAIN-DTGGVKQASHLLKYDS-TLGTFDADVKPVGDDAISVD-GKV 132 (395)
T ss_pred cccEEEEECcCHHHHHHHHHHHhCCC---CCeEEEEEc-CCCCHHHHHHHHhhcc-cCCCcCCcEEEecCCEEEEC-CEE
Confidence 44699999999999999999887543 225666663 4555555554444433 3366554331 11111111 112
Q ss_pred EEEEeccCCcccccccchhhh--ccCCEEEEccCchHHHHHHHhhccccc-ccEEecCCCCcccceEEEeCCcc
Q 001074 652 IEALQNRVGPETENVFDDTFW--ENITCVINALDNVNARLYVDQRCLYFQ-KPLLESGTLGAKCNTQMVIPHLT 722 (1163)
Q Consensus 652 I~~~~~~v~~~~e~~~~~~f~--~~~DvVi~alDn~~aR~~v~~~c~~~~-~PlI~sgt~G~~G~v~viip~~t 722 (1163)
|.....+ .+ .+.-| .+.|+|+.|+.-...|.+..... ..| +-++-++. .++.+..++|+..
T Consensus 133 I~v~~~~-dp------~~~~w~~~gvDiVie~TG~f~s~~~a~~hl-~aGAkkV~iSap--~~~~~ptvV~GVN 196 (395)
T PLN03096 133 IKVVSDR-NP------LNLPWGELGIDLVIEGTGVFVDREGAGKHI-QAGAKKVLITAP--GKGDIPTYVVGVN 196 (395)
T ss_pred EEEEEcC-Cc------ccccccccCCCEEEECcchhhhHHHHHHHH-HCCCEEEEeCCC--CCCCCCeEeCccC
Confidence 2222211 01 11225 58999999999888887655333 234 33444444 4455666777754
No 391
>PRK12939 short chain dehydrogenase; Provisional
Probab=81.51 E-value=3 Score=45.48 Aligned_cols=33 Identities=24% Similarity=0.533 Sum_probs=28.1
Q ss_pred HhcCcEEEEec-CcchHHHHHHHHHcccccCCCccEEEec
Q 001074 573 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITD 611 (1163)
Q Consensus 573 L~~~kVlvVGa-GglGce~lknLa~~Gv~~~~~g~i~ivD 611 (1163)
+.+++++|.|+ |+||.++++.|+..|. ++++++
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~------~v~~~~ 38 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGA------TVAFND 38 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCC------EEEEEe
Confidence 56789999995 9999999999999997 677764
No 392
>PRK06139 short chain dehydrogenase; Provisional
Probab=81.47 E-value=2.6 Score=49.25 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=30.0
Q ss_pred HHhcCcEEEEec-CcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 572 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 572 kL~~~kVlvVGa-GglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
.+.+++|+|.|+ ||||.++++.|+..|. ++++++.
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~------~Vvl~~R 39 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGA------RLVLAAR 39 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCC------EEEEEEC
Confidence 466789999996 8999999999999997 7887764
No 393
>PRK08605 D-lactate dehydrogenase; Validated
Probab=81.45 E-value=1.7 Score=50.76 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=29.2
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHH-cccccCCCccEEEecCC
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVAL-MGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~-~Gv~~~~~g~i~ivD~D 613 (1163)
.|++++|.|||+|.+|..+++.|+. .|+ +++..|..
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~~g~------~V~~~d~~ 179 (332)
T PRK08605 143 SIKDLKVAVIGTGRIGLAVAKIFAKGYGS------DVVAYDPF 179 (332)
T ss_pred eeCCCEEEEECCCHHHHHHHHHHHhcCCC------EEEEECCC
Confidence 5888999999999999999999953 454 67776643
No 394
>PRK06057 short chain dehydrogenase; Provisional
Probab=81.40 E-value=1.9 Score=47.60 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=31.4
Q ss_pred HHhcCcEEEEec-CcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 572 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 572 kL~~~kVlvVGa-GglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
++.+++|+|+|+ |+||..+++.|+..|. +++++|.+
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~------~v~~~~r~ 40 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGA------TVVVGDID 40 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCC------EEEEEeCC
Confidence 467889999996 9999999999999997 78888754
No 395
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=81.35 E-value=3 Score=48.11 Aligned_cols=68 Identities=22% Similarity=0.279 Sum_probs=47.8
Q ss_pred EEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhc----CCCEEEEeecCC
Q 001074 183 VSGMQGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN----NAVVLSTLTSKL 257 (1163)
Q Consensus 183 IiG~gglGsEiaKNLvlaGV-g~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLN----p~V~V~~~~~~l 257 (1163)
|||+|.+|+.+|-.|+..|+ .+|.|+|-. ..+++..+.-|+... ..+++.. .
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~-------------------~~~~~g~a~Dl~~~~~~~~~~~~i~~--~-- 57 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDIN-------------------KDKAEGEAMDLQHAASFLPTPKKIRS--G-- 57 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------CChhhHHHHHHHHhhcccCCCeEEec--C--
Confidence 68999999999999999997 569999841 224444444555443 2344442 2
Q ss_pred ChhhcCCCcEEEEecC
Q 001074 258 TKEQLSDFQAVVFTDI 273 (1163)
Q Consensus 258 ~~e~l~~fdvVI~~~~ 273 (1163)
+.+.+++.|+||.+..
T Consensus 58 ~~~~~~daDivVitag 73 (299)
T TIGR01771 58 DYSDCKDADLVVITAG 73 (299)
T ss_pred CHHHHCCCCEEEECCC
Confidence 3467899999999865
No 396
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=81.33 E-value=2.6 Score=50.04 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=31.9
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 001074 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 211 (1163)
Q Consensus 176 L~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d 211 (1163)
+...+|+|+|+|.+|..+++.+...|+ +++++|.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 567889999999999999999999999 69999964
No 397
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=81.33 E-value=1.4 Score=51.45 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=31.4
Q ss_pred HhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 573 L~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
++..||.|||+|.+|..++-.++..|+ ..|+++|-+
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl-----~~i~LvDi~ 39 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNL-----GDVVLFDIV 39 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-----CeEEEEeCC
Confidence 455799999999999999999999998 469999854
No 398
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=81.31 E-value=1.8 Score=53.90 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=31.7
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
.|.+++|.|||.|.+|.++++.|...|+ +++.+|.
T Consensus 135 ~l~gktvgIiG~G~IG~~vA~~l~~fG~------~V~~~d~ 169 (525)
T TIGR01327 135 ELYGKTLGVIGLGRIGSIVAKRAKAFGM------KVLAYDP 169 (525)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEECC
Confidence 5889999999999999999999998887 7888874
No 399
>PRK06940 short chain dehydrogenase; Provisional
Probab=81.21 E-value=3.2 Score=46.80 Aligned_cols=32 Identities=25% Similarity=0.547 Sum_probs=26.6
Q ss_pred cCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 575 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 575 ~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
++.++|.|+||||.++++.|+ .|. +++++|.+
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~------~Vv~~~r~ 33 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK------KVLLADYN 33 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC------EEEEEeCC
Confidence 467888899999999999996 676 78887653
No 400
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=81.13 E-value=7.3 Score=48.84 Aligned_cols=90 Identities=18% Similarity=0.272 Sum_probs=56.2
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecCC
Q 001074 178 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL 257 (1163)
Q Consensus 178 ~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~l 257 (1163)
+-||+|+|+|.+|.++++.|...|. .++++|.|.- |+ +++++. .+.+...+.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~-------------------~~----~~~~~~----g~~~i~GD~ 468 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRT-------------------RV----DELRER----GIRAVLGNA 468 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHH-------------------HH----HHHHHC----CCeEEEcCC
Confidence 4799999999999999999999997 6889886432 22 233332 133333333
Q ss_pred C-h-----hhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeE
Q 001074 258 T-K-----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFI 295 (1163)
Q Consensus 258 ~-~-----e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI 295 (1163)
+ + .-++++|.|+++..+......+-..+|+.++.++.|
T Consensus 469 ~~~~~L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~ii 512 (558)
T PRK10669 469 ANEEIMQLAHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEII 512 (558)
T ss_pred CCHHHHHhcCccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEE
Confidence 2 2 235688988777655444434444456655434444
No 401
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=81.08 E-value=1.4 Score=44.77 Aligned_cols=29 Identities=28% Similarity=0.618 Sum_probs=25.7
Q ss_pred EEEEecCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 578 VFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 578 VlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
|+|+|+|++|+.++-.|+..|. .+++++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~------~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH------DVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCC------ceEEEEc
Confidence 7899999999999999999987 7777753
No 402
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=80.99 E-value=5 Score=43.06 Aligned_cols=109 Identities=21% Similarity=0.177 Sum_probs=63.4
Q ss_pred cEEEEecCcchHHH-HHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHH-HHHHHHHHhhCCCCeEEE
Q 001074 577 KVFIVGSGALGCEF-LKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKS-TVAASAATSINPRLNIEA 654 (1163)
Q Consensus 577 kVlvVGaGglGce~-lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka-~vaa~~l~~~np~~~I~~ 654 (1163)
||.+||+|+.-... +..+... ...-+.++|.++|-|.= |+- .+ ..+.+.+++.+++++|+.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~-~~~l~~~ei~L~Did~~------RL~----------~~~~~~~~~~~~~~~~~~v~~ 63 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLR-TEELSGSEIVLMDIDEE------RLE----------IVERLARRMVEEAGADLKVEA 63 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHC-TTTSTEEEEEEE-SCHH------HHH----------HHHHHHHHHHHHCTTSSEEEE
T ss_pred CEEEECCchHhhHHHHHHHHhc-CccCCCcEEEEEcCCHH------HHH----------HHHHHHHHHHHhcCCCeEEEE
Confidence 68999999987653 3333322 11112268999987751 211 22 234444567778888877
Q ss_pred EeccCCcccccccchhhhccCCEEEEccC--chHHHHHHHhhcccccccEEecCCCCccc
Q 001074 655 LQNRVGPETENVFDDTFWENITCVINALD--NVNARLYVDQRCLYFQKPLLESGTLGAKC 712 (1163)
Q Consensus 655 ~~~~v~~~~e~~~~~~f~~~~DvVi~alD--n~~aR~~v~~~c~~~~~PlI~sgt~G~~G 712 (1163)
..++ .+-+++.|.||+++- ..++|..=.+.+.++|+.-...-|.|..|
T Consensus 64 ttd~----------~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG 113 (183)
T PF02056_consen 64 TTDR----------REALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGG 113 (183)
T ss_dssp ESSH----------HHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHH
T ss_pred eCCH----------HHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccH
Confidence 6532 344689999999874 55677666666677766654444555544
No 403
>PRK07576 short chain dehydrogenase; Provisional
Probab=80.97 E-value=5.3 Score=44.59 Aligned_cols=39 Identities=28% Similarity=0.417 Sum_probs=32.7
Q ss_pred HHHHhhcCeEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 001074 172 TMRRLFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDEG 211 (1163)
Q Consensus 172 ~q~kL~~s~VlIiG~-gglGsEiaKNLvlaGVg~itLvD~d 211 (1163)
++.++.+++|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus 3 ~~~~~~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~ 42 (264)
T PRK07576 3 TMFDFAGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRS 42 (264)
T ss_pred ccccCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 456788899999986 8999999999999997 58887753
No 404
>PLN02240 UDP-glucose 4-epimerase
Probab=80.92 E-value=5.5 Score=46.21 Aligned_cols=33 Identities=24% Similarity=0.515 Sum_probs=28.7
Q ss_pred HhcCcEEEEec-CcchHHHHHHHHHcccccCCCccEEEec
Q 001074 573 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITD 611 (1163)
Q Consensus 573 L~~~kVlvVGa-GglGce~lknLa~~Gv~~~~~g~i~ivD 611 (1163)
+++++|+|.|+ |.||..+++.|+..|. +++++|
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~------~V~~~~ 36 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY------KVVVID 36 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEEe
Confidence 46789999985 9999999999999886 788876
No 405
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.89 E-value=3.7 Score=47.67 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=48.5
Q ss_pred eEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecCC
Q 001074 180 NILVSGM-QGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL 257 (1163)
Q Consensus 180 ~VlIiG~-gglGsEiaKNLvlaGV-g~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~l 257 (1163)
+|.|||+ |.+|+.+|-.|+..|+ .++.|+|-. ||+.-+--|+.-.+.+.+.....+-
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~---------------------~a~g~alDL~~~~~~~~i~~~~~~~ 60 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV---------------------NTPGVAADLSHINTPAKVTGYLGPE 60 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC---------------------ccceeehHhHhCCCcceEEEecCCC
Confidence 7999999 9999999999999997 679999964 1111112233332445565431110
Q ss_pred -ChhhcCCCcEEEEecC
Q 001074 258 -TKEQLSDFQAVVFTDI 273 (1163)
Q Consensus 258 -~~e~l~~fdvVI~~~~ 273 (1163)
..+.+++.|+||.|..
T Consensus 61 ~~y~~~~daDivvitaG 77 (310)
T cd01337 61 ELKKALKGADVVVIPAG 77 (310)
T ss_pred chHHhcCCCCEEEEeCC
Confidence 1356889999998865
No 406
>PTZ00117 malate dehydrogenase; Provisional
Probab=80.82 E-value=1.5 Score=51.13 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=31.6
Q ss_pred hcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 574 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 574 ~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
.+.||.|||+|.+|..++-.|++.|+ ..|+++|-|
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~-----~~l~L~Di~ 38 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNL-----GDVVLYDVI 38 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCC-----CeEEEEECC
Confidence 56799999999999999999999998 689999864
No 407
>PRK08291 ectoine utilization protein EutC; Validated
Probab=80.58 E-value=4.7 Score=47.12 Aligned_cols=146 Identities=14% Similarity=0.173 Sum_probs=80.4
Q ss_pred ccccCchhhHhhhhhhHHHHHhhcCC------cccce--eeeeeeccCCCCCCC-CCCCCCCCccCchhhhhhhcCHHHH
Q 001074 500 RAVLNPMAAMFGGIVGQEVVKACSGK------FHPLY--QFFYFDSVESLPTEP-LDSTEFKPINSRYDAQISVFGAKLQ 570 (1163)
Q Consensus 500 ~~el~PvaA~iGGiaAQEVIKaiTgk------f~PI~--q~~~fD~ie~Lp~~~-~~~~~~~~~~~Rydrq~~l~G~~~q 570 (1163)
++.++.|.++++|.-. -.+|.++.- --|-. -.++||.-.+.|..- ++...+ ..-|-+.. ...+....
T Consensus 52 ~~~~~~mp~~~~~~~~-~g~K~~~~~~~N~~~glp~~~g~i~l~d~~tG~~~ai~~d~~~l--t~~rT~a~-~~~a~~~l 127 (330)
T PRK08291 52 RGEVDVKTAYIPGLDS-FAIKVSPGFFDNPKLGLPSLNGLMVVLSARTGLVEALLLDNGYL--TDVRTAAA-GAVAARHL 127 (330)
T ss_pred CCcEEEeecccCCCCe-eEEEeccCCCCccccCCCcceEEEEEEeCCCCceEEEEcCCchH--HHHHHHHH-HHHHHHHh
Confidence 3567778888876311 237877642 22322 356677665655321 111111 11121111 11222222
Q ss_pred HHHhcCcEEEEecCcchHHHHHHHHH-cccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCC
Q 001074 571 KKLEDAKVFIVGSGALGCEFLKNVAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPR 649 (1163)
Q Consensus 571 ~kL~~~kVlvVGaGglGce~lknLa~-~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~ 649 (1163)
.+-..++++|+|+|+.|...+..|+. .|+ .+++|++.+ ..|++.+++.+.+.. .
T Consensus 128 a~~~~~~v~IiGaG~~a~~~~~al~~~~~~-----~~V~v~~R~-------------------~~~a~~l~~~~~~~~-g 182 (330)
T PRK08291 128 AREDASRAAVIGAGEQARLQLEALTLVRPI-----REVRVWARD-------------------AAKAEAYAADLRAEL-G 182 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhcCCC-----CEEEEEcCC-------------------HHHHHHHHHHHhhcc-C
Confidence 22234689999999999999999985 577 788887432 336777777665432 2
Q ss_pred CeEEEEeccCCcccccccchhhhccCCEEEEccCc
Q 001074 650 LNIEALQNRVGPETENVFDDTFWENITCVINALDN 684 (1163)
Q Consensus 650 ~~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn 684 (1163)
+.+..+. +. .+.+.+.|+|++|+-.
T Consensus 183 ~~v~~~~-----d~-----~~al~~aDiVi~aT~s 207 (330)
T PRK08291 183 IPVTVAR-----DV-----HEAVAGADIIVTTTPS 207 (330)
T ss_pred ceEEEeC-----CH-----HHHHccCCEEEEeeCC
Confidence 3333221 11 2345789999999853
No 408
>PRK13529 malate dehydrogenase; Provisional
Probab=80.57 E-value=0.91 Score=55.99 Aligned_cols=45 Identities=20% Similarity=0.508 Sum_probs=35.6
Q ss_pred HHHhcCcEEEEecCcchHHHHHHHHH----cccccCC-CccEEEecCCcc
Q 001074 571 KKLEDAKVFIVGSGALGCEFLKNVAL----MGVSCGN-QGKLTITDDDVI 615 (1163)
Q Consensus 571 ~kL~~~kVlvVGaGglGce~lknLa~----~Gv~~~~-~g~i~ivD~D~I 615 (1163)
.+|.+.||+++|||+.|.-+++.|+. .|+.-.+ ..+|.++|.+=+
T Consensus 291 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GL 340 (563)
T PRK13529 291 EPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGL 340 (563)
T ss_pred CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCe
Confidence 46888999999999999999999987 5872111 258999998744
No 409
>PRK06720 hypothetical protein; Provisional
Probab=80.49 E-value=4 Score=43.01 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=30.2
Q ss_pred HHhcCcEEEEec-CcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 572 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 572 kL~~~kVlvVGa-GglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
+++++.++|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus 13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~------~V~l~~r~ 49 (169)
T PRK06720 13 KLAGKVAIVTGGGIGIGRNTALLLAKQGA------KVIVTDID 49 (169)
T ss_pred ccCCCEEEEecCCChHHHHHHHHHHHCCC------EEEEEECC
Confidence 367788999996 4699999999999996 78888755
No 410
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=80.47 E-value=3.8 Score=46.46 Aligned_cols=97 Identities=19% Similarity=0.150 Sum_probs=0.0
Q ss_pred cEEEEe-cCcchHHHHHHHHH-cccccCCCccEEEec-CCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEE
Q 001074 577 KVFIVG-SGALGCEFLKNVAL-MGVSCGNQGKLTITD-DDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 653 (1163)
Q Consensus 577 kVlvVG-aGglGce~lknLa~-~Gv~~~~~g~i~ivD-~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~ 653 (1163)
||.|+| +|.+|..+++.+.. -++ --+-++| .+.-.. ...+++........+.+.
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~-----elvav~d~~~~~~~------------------~~~~~~~~~~~~~gv~~~ 59 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGL-----QLVAAFERHGSSLQ------------------GTDAGELAGIGKVGVPVT 59 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCC-----EEEEEEecCCcccc------------------CCCHHHhcCcCcCCceee
Q ss_pred EEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCCCc
Q 001074 654 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGA 710 (1163)
Q Consensus 654 ~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~G~ 710 (1163)
.-. ++.-..+|+||+++ .+.+-..+-..|.++++|+| +||.|+
T Consensus 60 ~d~------------~~l~~~~DvVIdfT-~p~~~~~~~~~al~~g~~vV-igttg~ 102 (266)
T TIGR00036 60 DDL------------EAVETDPDVLIDFT-TPEGVLNHLKFALEHGVRLV-VGTTGF 102 (266)
T ss_pred CCH------------HHhcCCCCEEEECC-ChHHHHHHHHHHHHCCCCEE-EECCCC
No 411
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.45 E-value=3.1 Score=47.70 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=30.1
Q ss_pred HHHhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 571 KKLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 571 ~kL~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
..+.+++++|.| .||||.++++.|+..|. +++++|.
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga------~Vv~~~~ 44 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGA------TVVVNDV 44 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEecC
Confidence 356778999998 58899999999999997 7777764
No 412
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=80.37 E-value=5 Score=46.11 Aligned_cols=108 Identities=19% Similarity=0.195 Sum_probs=63.9
Q ss_pred eEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecCC-C
Q 001074 180 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL-T 258 (1163)
Q Consensus 180 ~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~l-~ 258 (1163)
+|.+||+|-+|..++.+|+.+|. .++++|.+.- ...+ . +.|-..+....+.+ -..++-+......- .
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~~-~~~~-----~---~~g~~~~~s~~~~~--~~advVi~~v~~~~~v 69 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGPV-ADEL-----L---SLGAVSVETARQVT--EASDIIFIMVPDTPQV 69 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCHh-HHHH-----H---HcCCeecCCHHHHH--hcCCEEEEeCCChHHH
Confidence 69999999999999999999996 7888886531 1111 1 12222222121111 13344444443321 0
Q ss_pred hh-------h---cCCCcEEEEec-CChhHHHHHHHHHHhcCCCceeEEeeecc
Q 001074 259 KE-------Q---LSDFQAVVFTD-ISLDKAIEFDDFCHNHQPAISFIKAEVRG 301 (1163)
Q Consensus 259 ~e-------~---l~~fdvVI~~~-~~~~~~~~ln~~cr~~~~~IpfI~~~~~G 301 (1163)
.+ . +..=.+||++. .++....++.+.+.+++ +.|+.+-+.|
T Consensus 70 ~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G--~~~vdaPVsG 121 (292)
T PRK15059 70 EEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELG--GDYLDAPVSG 121 (292)
T ss_pred HHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcC--CCEEEecCCC
Confidence 11 1 11224566554 57777888999999998 8888876655
No 413
>PRK06181 short chain dehydrogenase; Provisional
Probab=80.27 E-value=5.5 Score=44.09 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=26.6
Q ss_pred CcEEEEec-CcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 576 AKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 576 ~kVlvVGa-GglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
++|+|.|+ |+||.++++.|+..|. +++++|.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~------~Vi~~~r 33 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA------QLVLAAR 33 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC------EEEEEeC
Confidence 57899986 9999999999999886 7888764
No 414
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=80.26 E-value=4.7 Score=51.78 Aligned_cols=84 Identities=21% Similarity=0.324 Sum_probs=51.6
Q ss_pred hhhHhhhhhhH--HHHHhhc--CCcccceeeeeeeccCCCCCCCCCCCCCCCccCchhhhhhhcCHHHHHHHhcCcEEEE
Q 001074 506 MAAMFGGIVGQ--EVVKACS--GKFHPLYQFFYFDSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIV 581 (1163)
Q Consensus 506 vaA~iGGiaAQ--EVIKaiT--gkf~PI~q~~~fD~ie~Lp~~~~~~~~~~~~~~Rydrq~~l~G~~~q~kL~~~kVlvV 581 (1163)
.|.+.|-+..+ |++.... +.|+||..--.||- |-- ++. |-.+-.......|.+++|+|.
T Consensus 358 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-eyw---~~e-------------~~kl~~~~~~~~l~gkvvLVT 420 (676)
T TIGR02632 358 TARVAREFYVNAINVMRGAEAVSEYVSLPEQEAFDI-EYW---PLE-------------EAKLRRMPKEKTLARRVAFVT 420 (676)
T ss_pred HhhhhHHHHHHHHHHHhhhhcccceecCchhhccch-hhh---hhh-------------HHhhccCCCCcCCCCCEEEEe
Confidence 35555666666 6666655 78888876555542 111 000 000000001123567889999
Q ss_pred e-cCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 582 G-SGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 582 G-aGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
| +|+||.++++.|+..|. +++++|.
T Consensus 421 GasggIG~aiA~~La~~Ga------~Vvi~~r 446 (676)
T TIGR02632 421 GGAGGIGRETARRLAAEGA------HVVLADL 446 (676)
T ss_pred CCCcHHHHHHHHHHHhCCC------EEEEEeC
Confidence 8 58999999999999997 7888864
No 415
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=80.20 E-value=4.6 Score=47.08 Aligned_cols=35 Identities=20% Similarity=0.108 Sum_probs=29.1
Q ss_pred hhcCeEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 001074 176 LFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDEG 211 (1163)
Q Consensus 176 L~~s~VlIiG~-gglGsEiaKNLvlaGVg~itLvD~d 211 (1163)
+++++|+|.|+ |.+|+++++.|+..|. +|+++|.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~ 37 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLD 37 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCC
Confidence 45689999995 7799999999999995 67777754
No 416
>PRK08251 short chain dehydrogenase; Provisional
Probab=80.20 E-value=9.6 Score=41.69 Aligned_cols=61 Identities=21% Similarity=0.329 Sum_probs=43.1
Q ss_pred cCeEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 001074 178 ASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (1163)
Q Consensus 178 ~s~VlIiG-~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~ 256 (1163)
+++|+|.| .||+|.++++.|+..|. ++++.+.+. .+.+.+...+.+.+|...+.....+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D 61 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT-------------------DRLEELKAELLARYPGIKVAVAALD 61 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEEcC
Confidence 46788887 88999999999999995 687776531 2344555566666776666666555
Q ss_pred CC
Q 001074 257 LT 258 (1163)
Q Consensus 257 l~ 258 (1163)
++
T Consensus 62 ~~ 63 (248)
T PRK08251 62 VN 63 (248)
T ss_pred CC
Confidence 43
No 417
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=80.06 E-value=4.9 Score=44.36 Aligned_cols=33 Identities=18% Similarity=0.393 Sum_probs=27.6
Q ss_pred cCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 575 DAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 575 ~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
+++|+|.| .|+||.++++.|+..|. +++++|.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~------~vi~~~r~ 35 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY------RVAVADIN 35 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEECC
Confidence 45789988 57999999999999987 78888744
No 418
>PLN02240 UDP-glucose 4-epimerase
Probab=80.02 E-value=13 Score=43.20 Aligned_cols=34 Identities=35% Similarity=0.528 Sum_probs=29.0
Q ss_pred hhcCeEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 001074 176 LFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDE 210 (1163)
Q Consensus 176 L~~s~VlIiG~-gglGsEiaKNLvlaGVg~itLvD~ 210 (1163)
|++++|+|.|. |.+|..+++.|+..|. +|+++|.
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~~ 37 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVIDN 37 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 45689999985 8899999999999996 6888873
No 419
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=80.02 E-value=4.4 Score=46.95 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=29.1
Q ss_pred HhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 573 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 573 L~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
+++++|+|.| +|+||..+++.|+..|-+ .+++++|.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~----~~V~~~~r~ 39 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNP----KKIIIYSRD 39 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCC----cEEEEEcCC
Confidence 3567899998 589999999999998720 378888754
No 420
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=80.02 E-value=4.6 Score=46.04 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=27.2
Q ss_pred cEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 577 KVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 577 kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
+|+|.| +|.||..+++.|+..|. +++++|..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~------~V~~~~r~ 33 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE------EVRVLVRP 33 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC------EEEEEEec
Confidence 689998 59999999999999986 78888764
No 421
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=80.00 E-value=1.7 Score=50.50 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=32.7
Q ss_pred HHHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEec
Q 001074 570 QKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITD 611 (1163)
Q Consensus 570 q~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD 611 (1163)
.+.|++++|.|||.|.+|..++++|..+|+ ++++.|
T Consensus 11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~------~ViV~~ 46 (335)
T PRK13403 11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGV------EVVVGV 46 (335)
T ss_pred hhhhCcCEEEEEeEcHHHHHHHHHHHHCcC------EEEEEE
Confidence 468999999999999999999999999999 777765
No 422
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=79.92 E-value=1.6 Score=52.85 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=29.7
Q ss_pred CcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCc
Q 001074 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~ 614 (1163)
.+|+|||+|-.|||.|..||+.|+ +++|+++..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~------~V~LiE~rp 33 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGV------PVILYEMRP 33 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC------cEEEEeccc
Confidence 479999999999999999999998 899998643
No 423
>PRK07831 short chain dehydrogenase; Provisional
Probab=79.88 E-value=8.6 Score=42.62 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=28.5
Q ss_pred HhhcCeEEEEcC-C-hHHHHHHHHHHHhCCCeEEEEeC
Q 001074 175 RLFASNILVSGM-Q-GLGAEIAKNLILAGVKSVTLHDE 210 (1163)
Q Consensus 175 kL~~s~VlIiG~-g-glGsEiaKNLvlaGVg~itLvD~ 210 (1163)
.+.+.+|+|.|. | |+|..+++.|+..|.. +.+.|.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~ 50 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDI 50 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeC
Confidence 344688999997 5 7999999999999984 777653
No 424
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=79.84 E-value=6.5 Score=48.79 Aligned_cols=33 Identities=33% Similarity=0.408 Sum_probs=29.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001074 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (1163)
Q Consensus 179 s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~ 212 (1163)
++|.|||+|-.|..||.+|+.+|. .++++|.+.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~~ 40 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDARA 40 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 579999999999999999999998 789998643
No 425
>PRK10537 voltage-gated potassium channel; Provisional
Probab=79.76 E-value=4.9 Score=48.21 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=31.8
Q ss_pred hcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCccc
Q 001074 574 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIE 616 (1163)
Q Consensus 574 ~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie 616 (1163)
++.+++|+|.|.+|.++++.|...|. .++++|.|.++
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~~~g~------~vvVId~d~~~ 275 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLRQRGQ------AVTVIVPLGLE 275 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCC------CEEEEECchhh
Confidence 35689999999999999999998887 78899988553
No 426
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=79.75 E-value=10 Score=44.02 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=30.4
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 001074 177 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 210 (1163)
Q Consensus 177 ~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~ 210 (1163)
...+|+|.|+|++|..++.-+...|.+++.++|.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~ 202 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV 202 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence 5789999999999999999988999988888874
No 427
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=79.74 E-value=13 Score=42.26 Aligned_cols=80 Identities=9% Similarity=0.084 Sum_probs=49.4
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEee
Q 001074 178 ASNILVSGMQGLGAEIAKNLILAGV---KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (1163)
Q Consensus 178 ~s~VlIiG~gglGsEiaKNLvlaGV---g~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~ 254 (1163)
+.+|.+||+|-+|..++++|+..|. ..|+++|.+. .+++ .+.+.. .+. ...
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~-------------------~~~~----~l~~~~-g~~--~~~ 55 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNV-------------------SNLK----NASDKY-GIT--ITT 55 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCH-------------------HHHH----HHHHhc-CcE--EeC
Confidence 4589999999999999999999985 3466665311 1222 232211 132 221
Q ss_pred cCCChhhcCCCcEEEEecCChhHHHHHHHHH
Q 001074 255 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFC 285 (1163)
Q Consensus 255 ~~l~~e~l~~fdvVI~~~~~~~~~~~ln~~c 285 (1163)
+ ..+.+.+.|+||+|..+......+.++.
T Consensus 56 -~-~~e~~~~aDiIiLavkP~~~~~vl~~l~ 84 (272)
T PRK12491 56 -N-NNEVANSADILILSIKPDLYSSVINQIK 84 (272)
T ss_pred -C-cHHHHhhCCEEEEEeChHHHHHHHHHHH
Confidence 1 2345678899999987654444455443
No 428
>PLN02688 pyrroline-5-carboxylate reductase
Probab=79.74 E-value=7.8 Score=43.46 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=21.5
Q ss_pred cEEEEecCcchHHHHHHHHHccc
Q 001074 577 KVFIVGSGALGCEFLKNVALMGV 599 (1163)
Q Consensus 577 kVlvVGaGglGce~lknLa~~Gv 599 (1163)
||.+||+|.+|..++++|...|.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~ 24 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGV 24 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCC
Confidence 69999999999999999999884
No 429
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=79.66 E-value=4.7 Score=46.34 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=27.7
Q ss_pred cEEEEecCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 577 kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
+|.+||+|.+|..++++|+..|. .|++.|.+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~------~v~v~dr~ 32 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH------EVVGYDVN 32 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC------EEEEEECC
Confidence 69999999999999999999997 78888754
No 430
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=79.66 E-value=2.1 Score=49.91 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=29.3
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhCCCe------EEEEeCC
Q 001074 179 SNILVSGM-QGLGAEIAKNLILAGVKS------VTLHDEG 211 (1163)
Q Consensus 179 s~VlIiG~-gglGsEiaKNLvlaGVg~------itLvD~d 211 (1163)
.+|+|+|+ |.+|+.++..|+..|+-. +.|+|..
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~ 40 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIP 40 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecC
Confidence 38999999 999999999999988765 9999864
No 431
>PRK06125 short chain dehydrogenase; Provisional
Probab=79.60 E-value=4.8 Score=44.57 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=29.9
Q ss_pred HhcCcEEEEec-CcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 573 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 573 L~~~kVlvVGa-GglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
+.+++++|.|+ ||||.++++.|+..|. +++++|.+
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~------~V~~~~r~ 40 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC------HLHLVARD 40 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEeCC
Confidence 56789999996 7999999999999997 78887654
No 432
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=79.50 E-value=8.3 Score=45.53 Aligned_cols=113 Identities=16% Similarity=0.204 Sum_probs=0.0
Q ss_pred CHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEE--EeCCc--cCcccCCcccccCCC-----------ccCchH
Q 001074 169 GRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTL--HDEGT--VELWDLSSNFVFSDN-----------DIGKNR 233 (1163)
Q Consensus 169 G~e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itL--vD~d~--V~~sDL~rqff~~~~-----------DiGk~K 233 (1163)
+.+.++--.+.+|.|||+||-|+-++.+|...|+..+.+ +|.|. ....+..+-.++.++ ++|+.-
T Consensus 8 ~~~~~~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~L~~~~a~~ki~iG~~~t~G~GaG~~~~~G~~~ 87 (349)
T TIGR00065 8 FRELIQPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQHLKTTKADKKILIGKKLTRGLGAGGNPEIGRKA 87 (349)
T ss_pred hhhhcCcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCeEEEcCCCCCCCCCCCCCHHHHHHH
Q ss_pred HHHHHHHHHHhcCCCEEEEeecCCChhhcCCCcEEEEecC-----ChhHHHHHHHHHHhcCCCceeEEeeec
Q 001074 234 ALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDI-----SLDKAIEFDDFCHNHQPAISFIKAEVR 300 (1163)
Q Consensus 234 aea~~~~L~eLNp~V~V~~~~~~l~~e~l~~fdvVI~~~~-----~~~~~~~ln~~cr~~~~~IpfI~~~~~ 300 (1163)
++...+++++ .++++|.|+++.. ..-..-.+.+++++.+ ++.+..-+.
T Consensus 88 aee~~d~Ir~-----------------~le~~D~vfI~aglGGGTGSG~apvia~~ake~~--~l~vaivt~ 140 (349)
T TIGR00065 88 AEESRDEIRK-----------------LLEGADMVFITAGMGGGTGTGAAPVVAKIAKELG--ALTVAVVTK 140 (349)
T ss_pred HHHHHHHHHH-----------------HHhCCCEEEEEEeccCccchhHHHHHHHHHHHcC--CCEEEEEeC
No 433
>PRK06138 short chain dehydrogenase; Provisional
Probab=79.38 E-value=5.3 Score=43.73 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=29.0
Q ss_pred HhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 573 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 573 L~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
|++++++|.| .|+||..+++.|+..|. ++++++.
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~------~v~~~~r 37 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA------RVVVADR 37 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC------eEEEecC
Confidence 5678999998 58999999999999986 6777764
No 434
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=79.38 E-value=1.7 Score=49.43 Aligned_cols=31 Identities=32% Similarity=0.498 Sum_probs=28.1
Q ss_pred cEEEEecCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 577 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 577 kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
+|+|+|+|++|+.++..|+..|. +++++|.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~------~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH------DVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC------eEEEEECC
Confidence 79999999999999999999986 78998863
No 435
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=79.29 E-value=6.3 Score=49.45 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=31.4
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001074 177 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (1163)
Q Consensus 177 ~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~ 212 (1163)
.+.+|+|||+|..|...|..|.+.|. +++++|...
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~ 170 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGP 170 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 57799999999999999999999998 599999643
No 436
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=79.22 E-value=1.9 Score=49.11 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=30.5
Q ss_pred cCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 575 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 575 ~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
+++++|+|+||.+..++-.|+..|+ .+|+|++.+
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~-----~~i~i~nR~ 155 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGF-----TDGTIVARN 155 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCC-----CEEEEEeCC
Confidence 3589999999999999999999999 889998643
No 437
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=79.22 E-value=9.2 Score=46.49 Aligned_cols=102 Identities=15% Similarity=0.224 Sum_probs=63.0
Q ss_pred cCeEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 001074 178 ASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (1163)
Q Consensus 178 ~s~VlIiG-~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~ 256 (1163)
..+|+|.| .|-+|+.+++.|...|. +|+.+|..... . + +.+..+...-.++....+
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~~~~----------------~-~-----~~~~~~~~~~~~~~~~~D 176 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNFFTG----------------R-K-----ENLVHLFGNPRFELIRHD 176 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCCCc----------------c-H-----hHhhhhccCCceEEEECc
Confidence 34799998 57899999999999996 68888743210 0 0 001111111133444445
Q ss_pred CChhhcCCCcEEEEecC--C---------------hhHHHHHHHHHHhcCCCceeEEeeecceeE
Q 001074 257 LTKEQLSDFQAVVFTDI--S---------------LDKAIEFDDFCHNHQPAISFIKAEVRGLFG 304 (1163)
Q Consensus 257 l~~e~l~~fdvVI~~~~--~---------------~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G 304 (1163)
+.+..+.++|+||-+.. . ......+-+.|++++ +.||.+++.+.||
T Consensus 177 i~~~~~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g--~r~V~~SS~~VYg 239 (436)
T PLN02166 177 VVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG--ARFLLTSTSEVYG 239 (436)
T ss_pred cccccccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEECcHHHhC
Confidence 54445667898885432 1 111245567899988 7899988877776
No 438
>PLN00106 malate dehydrogenase
Probab=79.21 E-value=6.7 Score=45.80 Aligned_cols=74 Identities=12% Similarity=0.185 Sum_probs=0.0
Q ss_pred hcCeEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEee
Q 001074 177 FASNILVSGM-QGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (1163)
Q Consensus 177 ~~s~VlIiG~-gglGsEiaKNLvlaGV-g~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~ 254 (1163)
...+|+|+|+ |.+|+.+|-.|+..|+ +.+.|+|-+. ...+ +--|..-++.+.+....
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-----~~g~----------------a~Dl~~~~~~~~i~~~~ 75 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-----TPGV----------------AADVSHINTPAQVRGFL 75 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-----CCee----------------EchhhhCCcCceEEEEe
Q ss_pred cCCCh-hhcCCCcEEEEe
Q 001074 255 SKLTK-EQLSDFQAVVFT 271 (1163)
Q Consensus 255 ~~l~~-e~l~~fdvVI~~ 271 (1163)
..-+. +.+.+.|+||.+
T Consensus 76 ~~~d~~~~l~~aDiVVit 93 (323)
T PLN00106 76 GDDQLGDALKGADLVIIP 93 (323)
T ss_pred CCCCHHHHcCCCCEEEEe
No 439
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=79.20 E-value=6.7 Score=42.74 Aligned_cols=36 Identities=33% Similarity=0.418 Sum_probs=30.2
Q ss_pred HhhcCeEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 001074 175 RLFASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDEG 211 (1163)
Q Consensus 175 kL~~s~VlIiG-~gglGsEiaKNLvlaGVg~itLvD~d 211 (1163)
.+++++|+|.| .|++|..+++.|+..|. +|++++.+
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~ 39 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDIC 39 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 45678899998 68999999999999997 67777654
No 440
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=79.20 E-value=4 Score=49.86 Aligned_cols=89 Identities=21% Similarity=0.257 Sum_probs=57.4
Q ss_pred hcCeEEEEcCChHHHH-HHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 001074 177 FASNILVSGMQGLGAE-IAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (1163)
Q Consensus 177 ~~s~VlIiG~gglGsE-iaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~ 255 (1163)
..++|+|+|+|+.|.. +|+.|...|. .+++.|.... .. .+.|.+. .+.+.. .
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~-~V~~~D~~~~------------------~~----~~~l~~~--gi~~~~--~ 58 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGY-KVSGSDLKES------------------AV----TQRLLEL--GAIIFI--G 58 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCC-eEEEECCCCC------------------hH----HHHHHHC--CCEEeC--C
Confidence 4578999999999999 7999999997 5788775331 00 1234443 344432 2
Q ss_pred CCChhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEE
Q 001074 256 KLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIK 296 (1163)
Q Consensus 256 ~l~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~ 296 (1163)
..++.+.++|+||.+..=.... ..-..+++++ +|++.
T Consensus 59 -~~~~~~~~~d~vv~spgi~~~~-~~~~~a~~~~--i~i~~ 95 (461)
T PRK00421 59 -HDAENIKDADVVVYSSAIPDDN-PELVAARELG--IPVVR 95 (461)
T ss_pred -CCHHHCCCCCEEEECCCCCCCC-HHHHHHHHCC--CcEEe
Confidence 2455677899999876421111 2234567788 88874
No 441
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=79.20 E-value=1.7 Score=49.92 Aligned_cols=35 Identities=14% Similarity=0.438 Sum_probs=0.0
Q ss_pred HhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 573 L~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
|.+++|+|+|+|++|..+++.|..+|. +++++|.+
T Consensus 149 l~gk~v~IiG~G~iG~avA~~L~~~G~------~V~v~~R~ 183 (287)
T TIGR02853 149 IHGSNVMVLGFGRTGMTIARTFSALGA------RVFVGARS 183 (287)
T ss_pred CCCCEEEEEcChHHHHHHHHHHHHCCC------EEEEEeCC
No 442
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=79.17 E-value=1.7 Score=50.25 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=29.6
Q ss_pred cCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCc
Q 001074 575 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (1163)
Q Consensus 575 ~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~ 614 (1163)
..+|+|||+|++|+.++..|+..|. .++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~------~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF------DVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC------eEEEEEeCC
Confidence 3689999999999999999999996 788877654
No 443
>PRK07814 short chain dehydrogenase; Provisional
Probab=79.10 E-value=4.3 Score=45.16 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=29.6
Q ss_pred HhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 573 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 573 L~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
+.+++++|.| .|+||.++++.|+..|. +++++|.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~------~Vi~~~r~ 43 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA------DVLIAART 43 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEEeCC
Confidence 5678899998 56799999999999997 78888754
No 444
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=79.04 E-value=1.4 Score=49.55 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=0.0
Q ss_pred HHHhcCcEEEEecCcchHHHHHHHHHcccccCCCc----------cEEEecCC
Q 001074 571 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQG----------KLTITDDD 613 (1163)
Q Consensus 571 ~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g----------~i~ivD~D 613 (1163)
.+|.+.||+++|+|+-|+-+++.|...|+ . +|+++|..
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~-----~~Gls~e~A~~~i~~vD~~ 68 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXV-----KEGISKEEACKRIWXVDRK 68 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHH-----hcCCCHHHHhccEEEECCC
No 445
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=78.99 E-value=8.2 Score=44.56 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=29.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001074 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (1163)
Q Consensus 179 s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~ 212 (1163)
.+|.|+|+|-+|+.+|.+|+..|. +|+++|.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence 379999999999999999999997 799999754
No 446
>PRK06172 short chain dehydrogenase; Provisional
Probab=78.96 E-value=5.1 Score=44.04 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=29.4
Q ss_pred HhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 573 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 573 L~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
+.+++++|.| .|+||.++++.|+..|. ++++++.+
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~------~v~~~~r~ 40 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA------KVVVADRD 40 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEeCC
Confidence 5678999998 58999999999999997 68877643
No 447
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=78.93 E-value=4.4 Score=40.94 Aligned_cols=82 Identities=21% Similarity=0.145 Sum_probs=45.7
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 001074 177 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (1163)
Q Consensus 177 ~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~ 256 (1163)
...+|.|||+|-+|..+++.|..+|. .|.-+- +|..+..+++.++-+...+..
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~-~v~~v~----------------------srs~~sa~~a~~~~~~~~~~~---- 61 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGH-EVVGVY----------------------SRSPASAERAAAFIGAGAILD---- 61 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTS-EEEEES----------------------SCHH-HHHHHHC--TT---------
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCC-eEEEEE----------------------eCCcccccccccccccccccc----
Confidence 45689999999999999999999996 333221 133345566666655544332
Q ss_pred CChhhcCCCcEEEEecCChhHHHHHHHHHH
Q 001074 257 LTKEQLSDFQAVVFTDISLDKAIEFDDFCH 286 (1163)
Q Consensus 257 l~~e~l~~fdvVI~~~~~~~~~~~ln~~cr 286 (1163)
..+.+..+|+|+++..+-.......+++.
T Consensus 62 -~~~~~~~aDlv~iavpDdaI~~va~~La~ 90 (127)
T PF10727_consen 62 -LEEILRDADLVFIAVPDDAIAEVAEQLAQ 90 (127)
T ss_dssp -TTGGGCC-SEEEE-S-CCHHHHHHHHHHC
T ss_pred -cccccccCCEEEEEechHHHHHHHHHHHH
Confidence 23567789999998755444444444443
No 448
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=78.91 E-value=8.3 Score=43.21 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=21.6
Q ss_pred eEEEEcCChHHHHHHHHHHHhCC
Q 001074 180 NILVSGMQGLGAEIAKNLILAGV 202 (1163)
Q Consensus 180 ~VlIiG~gglGsEiaKNLvlaGV 202 (1163)
+|.|||+|-+|..+++.|...|.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~ 24 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPA 24 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCC
Confidence 69999999999999999999885
No 449
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.91 E-value=6.9 Score=48.25 Aligned_cols=89 Identities=16% Similarity=0.153 Sum_probs=57.7
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 001074 177 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (1163)
Q Consensus 177 ~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~ 256 (1163)
.+++|+|+|+|..|..+++.|...|. .+++.|... .+ .+.++++ .+.+ ....
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~-------------------~~----~~~l~~~--g~~~--~~~~ 62 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDP-------------------DA----LRPHAER--GVAT--VSTS 62 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCH-------------------HH----HHHHHhC--CCEE--EcCc
Confidence 57799999999999999999999996 788888421 01 1123332 2322 2222
Q ss_pred CChhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEE
Q 001074 257 LTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIK 296 (1163)
Q Consensus 257 l~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~ 296 (1163)
...+.+.++|+||.+..-.. ...+-..+++.+ ||++.
T Consensus 63 ~~~~~l~~~D~VV~SpGi~~-~~p~~~~a~~~g--i~v~~ 99 (488)
T PRK03369 63 DAVQQIADYALVVTSPGFRP-TAPVLAAAAAAG--VPIWG 99 (488)
T ss_pred chHhHhhcCCEEEECCCCCC-CCHHHHHHHHCC--CcEee
Confidence 23456778999998765222 223345668888 88884
No 450
>PRK07326 short chain dehydrogenase; Provisional
Probab=78.89 E-value=6.3 Score=42.74 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=28.1
Q ss_pred HhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 573 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 573 L~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
+.+.+|+|.| .|++|.++++.|+..|. ++++++.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~------~V~~~~r 38 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGY------KVAITAR 38 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCC------EEEEeeC
Confidence 3467899998 49999999999999887 6777654
No 451
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=78.86 E-value=2.6 Score=46.39 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=34.9
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001074 175 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (1163)
Q Consensus 175 kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~ 212 (1163)
.|+..+|+|.|.|.+|..+|+.|...|.+-+.+.|.+-
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 57889999999999999999999999999999998654
No 452
>PRK14982 acyl-ACP reductase; Provisional
Probab=78.85 E-value=1.7 Score=50.94 Aligned_cols=37 Identities=27% Similarity=0.485 Sum_probs=31.9
Q ss_pred HHhcCcEEEEec-CcchHHHHHHHHH-cccccCCCccEEEecCC
Q 001074 572 KLEDAKVFIVGS-GALGCEFLKNVAL-MGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 572 kL~~~kVlvVGa-GglGce~lknLa~-~Gv~~~~~g~i~ivD~D 613 (1163)
.|++++|+|+|| |.+|+++++.|+. .|+ .++++++.+
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv-----~~lilv~R~ 190 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGV-----AELLLVARQ 190 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCC-----CEEEEEcCC
Confidence 578899999999 8999999999985 578 789988643
No 453
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.84 E-value=7.4 Score=47.08 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=70.2
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 001074 176 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (1163)
Q Consensus 176 L~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~ 255 (1163)
+.+++|+|+|.|+.|..+++.|...|. +++..|...- . .. ...|. ..+.+. ..
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~-~v~~~D~~~~------------~-----~~----~~~l~---~g~~~~--~~ 56 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGV-TPRVIDTRIT------------P-----PG----LDKLP---ENVERH--TG 56 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCCC------------c-----hh----HHHHh---cCCEEE--eC
Confidence 457899999999999999999999997 7888885421 0 00 11232 134442 33
Q ss_pred CCChhhcCCCcEEEEecCChhHHHHHHHHHHhcCCCceeEEeeecceeEEEEEEcCCceEEEcCCCCCCcceeeccc
Q 001074 256 KLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGEDPHTGIIASI 332 (1163)
Q Consensus 256 ~l~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G~vf~d~g~~f~v~d~~ge~p~~~~I~~I 332 (1163)
..++..+.++|+||....-... ...-..+++.+ +|++.-. -+.+.++ +. +-..|.=++|....+.+|.+|
T Consensus 57 ~~~~~~~~~~d~vv~spgi~~~-~~~~~~a~~~g--~~v~~~~--el~~~~~-~~-~~I~VTGTnGKTTTt~ll~~i 126 (438)
T PRK03806 57 SLNDEWLLAADLIVASPGIALA-HPSLSAAADAG--IEIVGDI--ELFCREA-QA-PIVAITGSNGKSTVTTLVGEM 126 (438)
T ss_pred CCCHHHhcCCCEEEECCCCCCC-CHHHHHHHHCC--CeEEEHH--HHHhhhc-CC-CEEEEeCCCCHHHHHHHHHHH
Confidence 3344556788998887642222 23344568889 8855421 1222222 11 123333455655555555554
No 454
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.83 E-value=7.6 Score=42.34 Aligned_cols=35 Identities=29% Similarity=0.533 Sum_probs=30.1
Q ss_pred hhcCeEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 001074 176 LFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDEG 211 (1163)
Q Consensus 176 L~~s~VlIiG~-gglGsEiaKNLvlaGVg~itLvD~d 211 (1163)
+++++|+|.|+ |++|.++++.|+..|.. +++++..
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~ 38 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRN 38 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence 56789999985 78999999999999985 8888754
No 455
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=78.82 E-value=4.2 Score=51.48 Aligned_cols=89 Identities=11% Similarity=0.166 Sum_probs=62.5
Q ss_pred cCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEEE
Q 001074 575 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 654 (1163)
Q Consensus 575 ~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~~ 654 (1163)
+.+|+|+|+|-+|..+++.|...|+ .++++|.|.- +++ .+++. + ..+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~------~vvvID~d~~-------------------~v~----~~~~~--g--~~v 446 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM------RITVLERDIS-------------------AVN----LMRKY--G--YKV 446 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC------CEEEEECCHH-------------------HHH----HHHhC--C--CeE
Confidence 4689999999999999999999998 8999998853 222 22221 1 223
Q ss_pred EeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccc
Q 001074 655 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF 698 (1163)
Q Consensus 655 ~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~ 698 (1163)
+..+.+. ...+...-.++.|.||.++||.+.-..+-..+++.
T Consensus 447 ~~GDat~--~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~ 488 (601)
T PRK03659 447 YYGDATQ--LELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQH 488 (601)
T ss_pred EEeeCCC--HHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 4443332 22333344678999999999998887777777664
No 456
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=78.82 E-value=7.6 Score=47.95 Aligned_cols=123 Identities=15% Similarity=0.188 Sum_probs=63.8
Q ss_pred CcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccch---HHHHHHHHHHhh-CCCCe
Q 001074 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA---KSTVAASAATSI-NPRLN 651 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~---Ka~vaa~~l~~~-np~~~ 651 (1163)
.+|-+||.|..|..+++||+..|. ++++.|.+.=....+... ...-|-. -+..+++.+..+ .|++-
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~------~V~V~NRt~~k~~~l~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvI 76 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF------PISVYNRTTSKVDETVER----AKKEGNLPLYGFKDPEDFVLSIQKPRSV 76 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC------eEEEECCCHHHHHHHHHh----hhhcCCcccccCCCHHHHHhcCCCCCEE
Confidence 479999999999999999999998 888887642111111000 0000100 011223333221 24443
Q ss_pred EEEEeccCCcccccccc--hhhhccCCEEEEccCc-hHHHHHHHhhcccccccEEecCCCCc
Q 001074 652 IEALQNRVGPETENVFD--DTFWENITCVINALDN-VNARLYVDQRCLYFQKPLLESGTLGA 710 (1163)
Q Consensus 652 I~~~~~~v~~~~e~~~~--~~f~~~~DvVi~alDn-~~aR~~v~~~c~~~~~PlI~sgt~G~ 710 (1163)
+..+.. ++..+.+++ ...+..=|+|||+.-. ++.-..+.+.|...++.+|+++..|.
T Consensus 77 i~~v~~--~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG 136 (493)
T PLN02350 77 IILVKA--GAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGG 136 (493)
T ss_pred EEECCC--cHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCC
Confidence 333321 111122221 0112344677777653 33334446667777777887777765
No 457
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=78.70 E-value=3.7 Score=47.75 Aligned_cols=70 Identities=21% Similarity=0.323 Sum_probs=0.0
Q ss_pred eEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecCC
Q 001074 180 NILVSGM-QGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL 257 (1163)
Q Consensus 180 ~VlIiG~-gglGsEiaKNLvlaGV-g~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~l 257 (1163)
||.|+|+ |.+|+.+|-.|+..|+ ..+.|+| +-+ |+..+--|+...+.+.+......
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~D-------------------i~~--a~g~a~DL~~~~~~~~i~~~~~~- 58 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYD-------------------IAG--AAGVAADLSHIPTAASVKGFSGE- 58 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEec-------------------CCC--CcEEEchhhcCCcCceEEEecCC-
Q ss_pred C--hhhcCCCcEEEEe
Q 001074 258 T--KEQLSDFQAVVFT 271 (1163)
Q Consensus 258 ~--~e~l~~fdvVI~~ 271 (1163)
+ .+.+.+.|+||+|
T Consensus 59 ~~~~~~~~daDivvit 74 (312)
T TIGR01772 59 EGLENALKGADVVVIP 74 (312)
T ss_pred CchHHHcCCCCEEEEe
No 458
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.67 E-value=4.5 Score=46.59 Aligned_cols=77 Identities=12% Similarity=0.186 Sum_probs=57.5
Q ss_pred HHhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCC
Q 001074 572 KLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 650 (1163)
Q Consensus 572 kL~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~ 650 (1163)
.+++++|+||| .|.+|..++.+|+..|. .+++++.-+- + +
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~------tVtv~~~rT~--------------~--------l----------- 195 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANA------TVTIAHSRTR--------------D--------L----------- 195 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCC------EEEEECCCCC--------------C--------H-----------
Confidence 47799999999 99999999999999997 8888752211 0 0
Q ss_pred eEEEEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCCC
Q 001074 651 NIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTL 708 (1163)
Q Consensus 651 ~I~~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt~ 708 (1163)
.+..++.|+||.|+.+.. .+.......|.-+|+.|+.
T Consensus 196 ------------------~e~~~~ADIVIsavg~~~---~v~~~~lk~GavVIDvGin 232 (296)
T PRK14188 196 ------------------PAVCRRADILVAAVGRPE---MVKGDWIKPGATVIDVGIN 232 (296)
T ss_pred ------------------HHHHhcCCEEEEecCChh---hcchheecCCCEEEEcCCc
Confidence 233467899999998865 4555556667778887763
No 459
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=78.60 E-value=4.1 Score=44.49 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=29.4
Q ss_pred HhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 573 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 573 L~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
|++++++|.| .|+||.++++.|+..|. +++++|.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~------~v~~~~r~ 36 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA------KVAVFDLN 36 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEecCC
Confidence 4578999998 68999999999999987 77777644
No 460
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.56 E-value=5.1 Score=46.30 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=31.3
Q ss_pred hcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCc
Q 001074 574 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (1163)
Q Consensus 574 ~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~ 614 (1163)
..++|+|.|||.||--.....-.+|. .+|+++|...
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA-----~~VVi~d~~~ 204 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGA-----SDVVITDLVA 204 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCC-----CcEEEeecCH
Confidence 36799999999999988888888999 8999998653
No 461
>PRK06398 aldose dehydrogenase; Validated
Probab=78.49 E-value=4.8 Score=44.78 Aligned_cols=75 Identities=13% Similarity=0.131 Sum_probs=47.4
Q ss_pred HHhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHH-HHHHHHHHhhCCC
Q 001074 572 KLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKS-TVAASAATSINPR 649 (1163)
Q Consensus 572 kL~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka-~vaa~~l~~~np~ 649 (1163)
.|++++++|.| .||||.++++.|+..|. +++++|.+.-... +..+-..|+..+.+ +.+.+.+.+.+..
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~------~Vi~~~r~~~~~~----~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 72 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGS------NVINFDIKEPSYN----DVDYFKVDVSNKEQVIKGIDYVISKYGR 72 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC------eEEEEeCCccccC----ceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46778999998 67999999999999997 8888876542211 22233457766543 3344444444444
Q ss_pred CeEEEEe
Q 001074 650 LNIEALQ 656 (1163)
Q Consensus 650 ~~I~~~~ 656 (1163)
+.+-.+.
T Consensus 73 id~li~~ 79 (258)
T PRK06398 73 IDILVNN 79 (258)
T ss_pred CCEEEEC
Confidence 4444443
No 462
>PRK08374 homoserine dehydrogenase; Provisional
Probab=78.48 E-value=7.5 Score=45.66 Aligned_cols=109 Identities=19% Similarity=0.199 Sum_probs=58.1
Q ss_pred CcEEEEecCcchHHHHHHHHH--------cccccCCCcc-EEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhh
Q 001074 576 AKVFIVGSGALGCEFLKNVAL--------MGVSCGNQGK-LTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSI 646 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa~--------~Gv~~~~~g~-i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~ 646 (1163)
.+|.|+|+|.+|..+++.|.. .|+. -+ +.|.|.+ -.+|.+..+.-.+. .+...+.
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~----l~VvaV~ds~---------~~~~~~~Gid~~~l---~~~~~~~ 66 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVE----LKVVSITDTS---------GTIWLPEDIDLREA---KEVKENF 66 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCC---------ccccCCCCCChHHH---HHhhhcc
Confidence 589999999999999999877 6750 12 2333422 12333333332222 2222221
Q ss_pred CCCCeEEEEeccCCcccccccchhhh--ccCCEEEEccCchHHHHHHHhhcccccccEEecC
Q 001074 647 NPRLNIEALQNRVGPETENVFDDTFW--ENITCVINALDNVNARLYVDQRCLYFQKPLLESG 706 (1163)
Q Consensus 647 np~~~I~~~~~~v~~~~e~~~~~~f~--~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sg 706 (1163)
.. +..+.......... .++++ ...|+||+++....++.++. .|...++++|.+-
T Consensus 67 ~~---~~~~~~~~~~~~~~--~~ell~~~~~DVvVd~t~~~~a~~~~~-~al~~G~~VVtan 122 (336)
T PRK08374 67 GK---LSNWGNDYEVYNFS--PEEIVEEIDADIVVDVTNDKNAHEWHL-EALKEGKSVVTSN 122 (336)
T ss_pred Cc---hhhccccccccCCC--HHHHHhcCCCCEEEECCCcHHHHHHHH-HHHhhCCcEEECC
Confidence 11 11111100000000 12344 46899999997666655554 7778999999543
No 463
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=78.43 E-value=16 Score=42.30 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=29.3
Q ss_pred hhcCeEEEEcC-ChHHHHHHHHHHHhC-CCeEEEEeCC
Q 001074 176 LFASNILVSGM-QGLGAEIAKNLILAG-VKSVTLHDEG 211 (1163)
Q Consensus 176 L~~s~VlIiG~-gglGsEiaKNLvlaG-Vg~itLvD~d 211 (1163)
|++++|+|.|. |++|+.+++.|+..| ..+|+++|.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~ 39 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRD 39 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 35678999985 889999999999987 4578888753
No 464
>PRK05717 oxidoreductase; Validated
Probab=78.43 E-value=2.7 Score=46.43 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=30.5
Q ss_pred HHhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 572 KLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 572 kL~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
.+++++|+|.| +|+||.++++.|+..|. +++++|.+
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~------~v~~~~~~ 43 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLIAEGW------QVVLADLD 43 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHcCC------EEEEEcCC
Confidence 35577899998 69999999999999996 88888754
No 465
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=78.36 E-value=4.2 Score=49.23 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=35.9
Q ss_pred hhhhccCHHHH----HHhhcCeEEEEcCChHHHHHHHHHHHhCCCe
Q 001074 163 RQLAVYGRETM----RRLFASNILVSGMQGLGAEIAKNLILAGVKS 204 (1163)
Q Consensus 163 RQi~l~G~e~q----~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~ 204 (1163)
+|-|+|+.+.. ..|++++|+|||+|..|..-|-||--+|+..
T Consensus 17 ~~~r~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnV 62 (487)
T PRK05225 17 GKCRFMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDI 62 (487)
T ss_pred ccceecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCcccccee
Confidence 44577877665 7899999999999999999999999999943
No 466
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=78.35 E-value=4.6 Score=47.60 Aligned_cols=98 Identities=19% Similarity=0.234 Sum_probs=57.6
Q ss_pred CcEEEEec-CcchHHHHHHHHHcccccCCCccEE-EecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEE
Q 001074 576 AKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLT-ITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 653 (1163)
Q Consensus 576 ~kVlvVGa-GglGce~lknLa~~Gv~~~~~g~i~-ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~ 653 (1163)
.||+|+|| |.+|.++++.|+..-. -+++ +++.+. ..|+. +...+|.+...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~-----~el~~l~~s~~---------------sagk~--------~~~~~~~l~~~ 52 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE-----VEITYLVSSRE---------------SAGKP--------VSEVHPHLRGL 52 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC-----ceEEEEeccch---------------hcCCC--------hHHhCcccccc
Confidence 37999999 9999999999996521 3555 545442 11111 11112322110
Q ss_pred EEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhcccccccEEecCC
Q 001074 654 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGT 707 (1163)
Q Consensus 654 ~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~~~~PlI~sgt 707 (1163)
....+.+.. .+++.+++|+|+.|+.+-.++.++... ...++.+|+-+.
T Consensus 53 -~~~~~~~~~----~~~~~~~~DvVf~alP~~~s~~~~~~~-~~~G~~VIDlS~ 100 (346)
T TIGR01850 53 -VDLNLEPID----EEEIAEDADVVFLALPHGVSAELAPEL-LAAGVKVIDLSA 100 (346)
T ss_pred -CCceeecCC----HHHhhcCCCEEEECCCchHHHHHHHHH-HhCCCEEEeCCh
Confidence 000111100 023445899999999999888888765 456888887554
No 467
>PLN02427 UDP-apiose/xylose synthase
Probab=78.27 E-value=4.9 Score=47.62 Aligned_cols=35 Identities=14% Similarity=0.300 Sum_probs=28.9
Q ss_pred HHhcCcEEEEe-cCcchHHHHHHHHHcc-cccCCCccEEEecC
Q 001074 572 KLEDAKVFIVG-SGALGCEFLKNVALMG-VSCGNQGKLTITDD 612 (1163)
Q Consensus 572 kL~~~kVlvVG-aGglGce~lknLa~~G-v~~~~~g~i~ivD~ 612 (1163)
+++.+||+|.| +|-||+.+++.|+..| . +++.+|.
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~------~V~~l~r 47 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPH------KVLALDV 47 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCC------EEEEEec
Confidence 45667899999 5999999999999985 4 6777774
No 468
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=78.26 E-value=7.1 Score=39.43 Aligned_cols=83 Identities=19% Similarity=0.236 Sum_probs=45.9
Q ss_pred hcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEE
Q 001074 574 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 653 (1163)
Q Consensus 574 ~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~ 653 (1163)
.+.||.|||+|-+|..+++.|...|. .|.-+ |.. +...++++.+.-+...+.
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~------~v~~v---------------~sr-------s~~sa~~a~~~~~~~~~~ 60 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGH------EVVGV---------------YSR-------SPASAERAAAFIGAGAIL 60 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTS------EEEEE---------------SSC-------HH-HHHHHHC--TT----
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCC------eEEEE---------------EeC-------Cccccccccccccccccc
Confidence 45699999999999999999999997 44322 111 112233444444433221
Q ss_pred EEeccCCcccccccchhhhccCCEEEEccCchHHHHHHHhhccc
Q 001074 654 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLY 697 (1163)
Q Consensus 654 ~~~~~v~~~~e~~~~~~f~~~~DvVi~alDn~~aR~~v~~~c~~ 697 (1163)
.. .+.....|+|+-|+-+..-.......+..
T Consensus 61 ~~-------------~~~~~~aDlv~iavpDdaI~~va~~La~~ 91 (127)
T PF10727_consen 61 DL-------------EEILRDADLVFIAVPDDAIAEVAEQLAQY 91 (127)
T ss_dssp -T-------------TGGGCC-SEEEE-S-CCHHHHHHHHHHCC
T ss_pred cc-------------ccccccCCEEEEEechHHHHHHHHHHHHh
Confidence 11 23457899999998766666666666544
No 469
>PRK12367 short chain dehydrogenase; Provisional
Probab=78.24 E-value=2.3 Score=47.31 Aligned_cols=39 Identities=26% Similarity=0.328 Sum_probs=34.4
Q ss_pred HHHHHhcCcEEEEec-CcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 569 LQKKLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 569 ~q~kL~~~kVlvVGa-GglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
.|.++++++++|.|+ ||||.++++.|+..|. +++++|.+
T Consensus 8 ~~~~l~~k~~lITGas~gIG~ala~~l~~~G~------~Vi~~~r~ 47 (245)
T PRK12367 8 AQSTWQGKRIGITGASGALGKALTKAFRAKGA------KVIGLTHS 47 (245)
T ss_pred hHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC------EEEEEECC
Confidence 588999999999985 8999999999999997 78887754
No 470
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=78.21 E-value=1.8 Score=52.31 Aligned_cols=36 Identities=33% Similarity=0.584 Sum_probs=32.5
Q ss_pred HhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 573 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 573 L~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
+.+.+|+|+|+|++|..+++.|...|+ .+++++|.+
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~-----~~V~v~~r~ 215 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGV-----RKITVANRT 215 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCC-----CeEEEEeCC
Confidence 678999999999999999999999998 789988643
No 471
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=78.19 E-value=2.6 Score=47.60 Aligned_cols=117 Identities=12% Similarity=0.128 Sum_probs=68.6
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEee
Q 001074 178 ASNILVSGMQGLGAEIAKNLILAGV---KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 254 (1163)
Q Consensus 178 ~s~VlIiG~gglGsEiaKNLvlaGV---g~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~ 254 (1163)
..||.|||||.+|..+++.|..-+. .-..+.|.+.-....+. +..++-...+.|....|++-|++-.
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~----------~~~~~~~~l~~ll~~~~DlVVE~A~ 71 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALA----------GRVALLDGLPGLLAWRPDLVVEAAG 71 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhh----------ccCcccCCHHHHhhcCCCEEEECCC
Confidence 3589999999999999999764333 23334444321111111 1112222244455666887777654
Q ss_pred cCC----ChhhcC-CCcEEEEecC---ChhHHHHHHHHHHhcCCCceeEEeeecceeE
Q 001074 255 SKL----TKEQLS-DFQAVVFTDI---SLDKAIEFDDFCHNHQPAISFIKAEVRGLFG 304 (1163)
Q Consensus 255 ~~l----~~e~l~-~fdvVI~~~~---~~~~~~~ln~~cr~~~~~IpfI~~~~~G~~G 304 (1163)
... -+..|+ +.|+||.+.. +.....++.+.|++.+..+-+-+....|+.+
T Consensus 72 ~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD~ 129 (267)
T PRK13301 72 QQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLDY 129 (267)
T ss_pred HHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHHH
Confidence 332 233555 7899998765 4556778999999987444444444444433
No 472
>PRK07856 short chain dehydrogenase; Provisional
Probab=78.16 E-value=5.6 Score=43.82 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=48.0
Q ss_pred HhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchH-HHHHHHHHHhhCCCC
Q 001074 573 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK-STVAASAATSINPRL 650 (1163)
Q Consensus 573 L~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~K-a~vaa~~l~~~np~~ 650 (1163)
+.+++++|.| .|+||.++++.|+..|. +++++|.+.-. ........+...|+..+- .+.+.+.+.+..+.+
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~------~v~~~~r~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 76 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGA------TVVVCGRRAPE-TVDGRPAEFHAADVRDPDQVAALVDAIVERHGRL 76 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEEeCChhh-hhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 5678899998 68999999999999997 78888875422 111223333455665532 233344444444445
Q ss_pred eEEEEec
Q 001074 651 NIEALQN 657 (1163)
Q Consensus 651 ~I~~~~~ 657 (1163)
.+..+..
T Consensus 77 d~vi~~a 83 (252)
T PRK07856 77 DVLVNNA 83 (252)
T ss_pred CEEEECC
Confidence 5554443
No 473
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=78.12 E-value=1.3 Score=54.53 Aligned_cols=61 Identities=20% Similarity=0.357 Sum_probs=44.3
Q ss_pred cCchhhhhhhcCHHHH------------------HHHhcCcEEEEecCcchHHHHHHHHH----cccccCC-CccEEEec
Q 001074 555 NSRYDAQISVFGAKLQ------------------KKLEDAKVFIVGSGALGCEFLKNVAL----MGVSCGN-QGKLTITD 611 (1163)
Q Consensus 555 ~~Rydrq~~l~G~~~q------------------~kL~~~kVlvVGaGglGce~lknLa~----~Gv~~~~-~g~i~ivD 611 (1163)
-+||...+.+|..+.| .+|++.||+++|||+-|.-+++.|+. .|++-.+ ..+|.++|
T Consensus 259 L~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD 338 (559)
T PTZ00317 259 LERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVD 338 (559)
T ss_pred HHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEc
Confidence 3566666666654433 47889999999999999999999884 6872211 25899999
Q ss_pred CCcc
Q 001074 612 DDVI 615 (1163)
Q Consensus 612 ~D~I 615 (1163)
.+=+
T Consensus 339 ~~GL 342 (559)
T PTZ00317 339 SKGL 342 (559)
T ss_pred CCCe
Confidence 8743
No 474
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=78.10 E-value=2.7 Score=47.33 Aligned_cols=102 Identities=17% Similarity=0.130 Sum_probs=59.5
Q ss_pred HHhhcCeEEEEcCChHHHHHHHHHHHh----CC------CeEEEEeCCc-cCcccCCcccccCCCccCchHHHHHHHHHH
Q 001074 174 RRLFASNILVSGMQGLGAEIAKNLILA----GV------KSVTLHDEGT-VELWDLSSNFVFSDNDIGKNRALASVQKLQ 242 (1163)
Q Consensus 174 ~kL~~s~VlIiG~gglGsEiaKNLvla----GV------g~itLvD~d~-V~~sDL~rqff~~~~DiGk~Kaea~~~~L~ 242 (1163)
++|++.+|+++|+|..|.-|++.|+.+ |+ ++|.++|..- ++... +|+- ..-.+..+
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r---------~~l~----~~~~~~a~ 87 (255)
T PF03949_consen 21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR---------EDLN----PHKKPFAR 87 (255)
T ss_dssp S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT---------SSHS----HHHHHHHB
T ss_pred CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC---------ccCC----hhhhhhhc
Confidence 468999999999999999999999999 99 8999999863 32221 1221 11122233
Q ss_pred HhcCCCEEEEeecCCChhhcCCC--cEEEEecC--ChhHHHHHHHHHHhcCCCceeE
Q 001074 243 ELNNAVVLSTLTSKLTKEQLSDF--QAVVFTDI--SLDKAIEFDDFCHNHQPAISFI 295 (1163)
Q Consensus 243 eLNp~V~V~~~~~~l~~e~l~~f--dvVI~~~~--~~~~~~~ln~~cr~~~~~IpfI 295 (1163)
..++.-.. .++ .+.+++. |++|-+.. ..-+...+.+++..+. .|+|
T Consensus 88 ~~~~~~~~----~~L-~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~e--rPII 137 (255)
T PF03949_consen 88 KTNPEKDW----GSL-LEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNE--RPII 137 (255)
T ss_dssp SSSTTT------SSH-HHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSS--SEEE
T ss_pred cCcccccc----cCH-HHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCC--CCEE
Confidence 33332111 111 2345566 88887652 2334555666666666 5666
No 475
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=78.09 E-value=3 Score=47.46 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=30.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 001074 179 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 210 (1163)
Q Consensus 179 s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~ 210 (1163)
.+|+|+|+||.+..++..|...|+++|+|++.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR 154 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVAR 154 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 58999999999999999999999999999985
No 476
>PRK07774 short chain dehydrogenase; Provisional
Probab=78.04 E-value=2.7 Score=46.00 Aligned_cols=35 Identities=20% Similarity=0.510 Sum_probs=30.0
Q ss_pred HhcCcEEEEec-CcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 573 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 573 L~~~kVlvVGa-GglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
+++++++|.|+ |+||.++++.|+..|. +++++|.+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~------~vi~~~r~ 39 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGA------SVVVADIN 39 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCC
Confidence 56788999996 9999999999999997 78887643
No 477
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=78.02 E-value=8.6 Score=45.01 Aligned_cols=87 Identities=16% Similarity=0.193 Sum_probs=54.8
Q ss_pred HHHHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEE
Q 001074 171 ETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVL 250 (1163)
Q Consensus 171 e~q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V 250 (1163)
.-...+++++|.|+|+|.+|.++|+.|.-.| ..|.-...... +-+...+...+
T Consensus 155 ~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r~~~-------------------~~~~~~~~~~~------- 207 (336)
T KOG0069|consen 155 PLGYDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILYHSRTQL-------------------PPEEAYEYYAE------- 207 (336)
T ss_pred cccccccCCEEEEecCcHHHHHHHHhhhhcc-ceeeeecccCC-------------------chhhHHHhccc-------
Confidence 3346889999999999999999999999977 33333221110 11111111111
Q ss_pred EEeecCC-ChhhcCCCcEEEEec-CChhHHHHHHH-HHHhcC
Q 001074 251 STLTSKL-TKEQLSDFQAVVFTD-ISLDKAIEFDD-FCHNHQ 289 (1163)
Q Consensus 251 ~~~~~~l-~~e~l~~fdvVI~~~-~~~~~~~~ln~-~cr~~~ 289 (1163)
.. .++.+.+.|+||+|. .+.+++..+|+ +|...+
T Consensus 208 -----~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk 244 (336)
T KOG0069|consen 208 -----FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMK 244 (336)
T ss_pred -----ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcC
Confidence 22 245788899888765 57778888886 344444
No 478
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=77.96 E-value=1.8 Score=50.57 Aligned_cols=35 Identities=14% Similarity=0.289 Sum_probs=32.3
Q ss_pred HHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEe
Q 001074 571 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTIT 610 (1163)
Q Consensus 571 ~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~iv 610 (1163)
..|.+++|+|||+|-+|.-++++|...|+ .+|+|+
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~-----~~i~v~ 204 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQRQGY-----SRITFC 204 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHHcCC-----CEEEEE
Confidence 35889999999999999999999999999 889886
No 479
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=77.92 E-value=6.9 Score=43.24 Aligned_cols=25 Identities=8% Similarity=0.344 Sum_probs=22.7
Q ss_pred cCcEEEEecCcchHHHHHHHHHccc
Q 001074 575 DAKVFIVGSGALGCEFLKNVALMGV 599 (1163)
Q Consensus 575 ~~kVlvVGaGglGce~lknLa~~Gv 599 (1163)
..||.|||+|.+|..+++.|+..|.
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~ 28 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSK 28 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCC
Confidence 5689999999999999999998873
No 480
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=77.83 E-value=6.7 Score=47.68 Aligned_cols=33 Identities=15% Similarity=0.399 Sum_probs=28.6
Q ss_pred cCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 575 DAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 575 ~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
..||+|.| +|-||+.+++.|...|. +++++|.+
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G~------~V~~ldr~ 153 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRGD------EVIVIDNF 153 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 45899998 69999999999999997 78888754
No 481
>PRK05872 short chain dehydrogenase; Provisional
Probab=77.80 E-value=6.6 Score=44.74 Aligned_cols=36 Identities=25% Similarity=0.482 Sum_probs=30.4
Q ss_pred HHhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 572 KLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 572 kL~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
.+.+++++|.| .||||.++++.|+..|. ++++++.+
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~------~V~~~~r~ 42 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGA------KLALVDLE 42 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCC
Confidence 36678999998 59999999999999997 78887643
No 482
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=77.78 E-value=1.9 Score=55.79 Aligned_cols=170 Identities=14% Similarity=0.106 Sum_probs=85.1
Q ss_pred CcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcccccCcC---cccCcccCcccchHHHHHHHHHHhhCCCCeE
Q 001074 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLS---RQFLFRDWNIGQAKSTVAASAATSINPRLNI 652 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLn---RQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I 652 (1163)
++|.|||+|.+|+.++-.+|..|+ .++++|.+.=.....- ++.|-..-.-|+-..+.+.+.+.+ |
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~------~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~------i 403 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL------KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSN------L 403 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC------cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhC------e
Confidence 489999999999999999999999 9999997642211100 000000000111111111111111 1
Q ss_pred EEEeccCCcccccccchhhhccCCEEEEccC-chHHHHHHHhhccccccc--EEecCCCCcccc-eEEEeCCcccccCCC
Q 001074 653 EALQNRVGPETENVFDDTFWENITCVINALD-NVNARLYVDQRCLYFQKP--LLESGTLGAKCN-TQMVIPHLTENYGAS 728 (1163)
Q Consensus 653 ~~~~~~v~~~~e~~~~~~f~~~~DvVi~alD-n~~aR~~v~~~c~~~~~P--lI~sgt~G~~G~-v~viip~~t~~y~~~ 728 (1163)
+.. +. + +-++++|+||.|+- +.+.++-+-...-..-.| ++-+-|.+..-. ..-.+.+-..+.+.+
T Consensus 404 ~~~-------~~--~--~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~H 472 (737)
T TIGR02441 404 TPT-------LD--Y--SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMH 472 (737)
T ss_pred EEe-------CC--H--HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEe
Confidence 111 11 1 23579999999974 666666544444333222 444444443111 000011101111111
Q ss_pred -CCCCCCCCCCccccCCCCChhhHHHHHHHHhhhhccCChhhh
Q 001074 729 -RDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEV 770 (1163)
Q Consensus 729 -~dp~~~~~p~Ct~~~fP~~~~Hci~wAr~~F~~lF~~~~~~~ 770 (1163)
-.|+. ..|+.-+-.-|...+.++.++.+++..+ ++.|--+
T Consensus 473 ff~P~~-~m~LvEvv~g~~Ts~~~~~~~~~~~~~l-gk~pv~v 513 (737)
T TIGR02441 473 YFSPVD-KMQLLEIITHDGTSKDTLASAVAVGLKQ-GKVVIVV 513 (737)
T ss_pred ccCCcc-cCceEEEeCCCCCCHHHHHHHHHHHHHC-CCeEEEE
Confidence 12333 3355555556888888999988876543 6655433
No 483
>PLN02688 pyrroline-5-carboxylate reductase
Probab=77.71 E-value=13 Score=41.79 Aligned_cols=76 Identities=16% Similarity=0.241 Sum_probs=46.5
Q ss_pred eEEEEcCChHHHHHHHHHHHhCC---CeEEEE-eCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeec
Q 001074 180 NILVSGMQGLGAEIAKNLILAGV---KSVTLH-DEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 255 (1163)
Q Consensus 180 ~VlIiG~gglGsEiaKNLvlaGV---g~itLv-D~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~ 255 (1163)
+|.+||+|.+|..++++|..+|. ..|+++ |. ...|+ +.+.+. .+.+. .
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r-------------------~~~~~----~~~~~~--g~~~~--~- 53 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS-------------------NPARR----DVFQSL--GVKTA--A- 53 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC-------------------CHHHH----HHHHHc--CCEEe--C-
Confidence 69999999999999999999985 255655 21 01122 223332 23322 1
Q ss_pred CCChhhcCCCcEEEEecCChhHHHHHHHH
Q 001074 256 KLTKEQLSDFQAVVFTDISLDKAIEFDDF 284 (1163)
Q Consensus 256 ~l~~e~l~~fdvVI~~~~~~~~~~~ln~~ 284 (1163)
+ ..+...+.|+||.|..+......+.++
T Consensus 54 ~-~~e~~~~aDvVil~v~~~~~~~vl~~l 81 (266)
T PLN02688 54 S-NTEVVKSSDVIILAVKPQVVKDVLTEL 81 (266)
T ss_pred C-hHHHHhcCCEEEEEECcHHHHHHHHHH
Confidence 1 224466889999998654444444444
No 484
>PLN02427 UDP-apiose/xylose synthase
Probab=77.65 E-value=13 Score=44.04 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=29.5
Q ss_pred HHhhcCeEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 001074 174 RRLFASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDE 210 (1163)
Q Consensus 174 ~kL~~s~VlIiG-~gglGsEiaKNLvlaGVg~itLvD~ 210 (1163)
++++..+|||.| .|-+|+.+++.|+..|--+|+.+|.
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 356667899999 5889999999999985336777774
No 485
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=77.63 E-value=2.9 Score=49.00 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=34.8
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 001074 175 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 212 (1163)
Q Consensus 175 kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~ 212 (1163)
.|.+++|||||+|-+|..++++|...|+++|++.....
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~ 208 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQ 208 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 48899999999999999999999999999999987543
No 486
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=77.63 E-value=2.1 Score=47.04 Aligned_cols=38 Identities=32% Similarity=0.406 Sum_probs=34.2
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCc
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~ 614 (1163)
.|++++|+|.|.|.+|..+++.|...|. ..+.+.|.+-
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~-----~vV~vsD~~g 57 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGG-----KVLAVSDPDG 57 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCC-----EEEEEEcCCC
Confidence 5788999999999999999999999998 7888888664
No 487
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=77.57 E-value=5.3 Score=46.04 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=29.0
Q ss_pred HhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 573 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 573 L~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
+.+++++|.| .||||.++++.|+..|. ++++++.+
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~------~V~~~~r~ 39 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGW------HVIMACRN 39 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCC------EEEEEECC
Confidence 3467899998 69999999999999997 78887643
No 488
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.56 E-value=6 Score=43.87 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=29.7
Q ss_pred HHhcCcEEEEecC---cchHHHHHHHHHcccccCCCccEEEec
Q 001074 572 KLEDAKVFIVGSG---ALGCEFLKNVALMGVSCGNQGKLTITD 611 (1163)
Q Consensus 572 kL~~~kVlvVGaG---glGce~lknLa~~Gv~~~~~g~i~ivD 611 (1163)
+|.+++++|.|++ |||.++++.|+..|. ++++++
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~------~vi~~~ 39 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGA------DIFFTY 39 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCC------eEEEEe
Confidence 5788999999984 899999999999997 677764
No 489
>PRK12827 short chain dehydrogenase; Provisional
Probab=77.53 E-value=5.7 Score=43.22 Aligned_cols=33 Identities=33% Similarity=0.569 Sum_probs=28.7
Q ss_pred HhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEec
Q 001074 573 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITD 611 (1163)
Q Consensus 573 L~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD 611 (1163)
+.+++++|.| .|+||.++++.|+..|. ++++++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~------~v~~~~ 37 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGA------DVIVLD 37 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC------eEEEEc
Confidence 4568899998 79999999999999997 677776
No 490
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.50 E-value=4.2 Score=44.92 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=29.5
Q ss_pred HhcCcEEEEecC---cchHHHHHHHHHcccccCCCccEEEecCC
Q 001074 573 LEDAKVFIVGSG---ALGCEFLKNVALMGVSCGNQGKLTITDDD 613 (1163)
Q Consensus 573 L~~~kVlvVGaG---glGce~lknLa~~Gv~~~~~g~i~ivD~D 613 (1163)
|++++|+|.|++ |||..+++.|+..|. ++++++..
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~------~vi~~~r~ 40 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGI------DIFFTYWS 40 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCC------cEEEEcCC
Confidence 567789999984 799999999999997 78887653
No 491
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=77.44 E-value=8.5 Score=40.08 Aligned_cols=86 Identities=20% Similarity=0.259 Sum_probs=53.3
Q ss_pred EEEEec-CcchHHHHHHHHHcccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHHhhCCCCeEEEEe
Q 001074 578 VFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 656 (1163)
Q Consensus 578 VlvVGa-GglGce~lknLa~~Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~~~np~~~I~~~~ 656 (1163)
|+|+|+ |.+|..+++.|...|. +++++= |. ..|.+. .+ +++.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~------~V~~~~----------R~---------~~~~~~--------~~--~~~~~~ 45 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH------EVTALV----------RS---------PSKAED--------SP--GVEIIQ 45 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS------EEEEEE----------SS---------GGGHHH--------CT--TEEEEE
T ss_pred eEEECCCChHHHHHHHHHHHCCC------EEEEEe----------cC---------chhccc--------cc--ccccce
Confidence 789997 9999999999999997 666641 11 112222 33 455555
Q ss_pred ccCCcccccccchhhhccCCEEEEccCc----hHHHHHHHhhccccccc
Q 001074 657 NRVGPETENVFDDTFWENITCVINALDN----VNARLYVDQRCLYFQKP 701 (1163)
Q Consensus 657 ~~v~~~~e~~~~~~f~~~~DvVi~alDn----~~aR~~v~~~c~~~~~P 701 (1163)
..+.+. +.+ .+.++++|.||.++.. ...-..+-+.|...+++
T Consensus 46 ~d~~d~-~~~--~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~ 91 (183)
T PF13460_consen 46 GDLFDP-DSV--KAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVK 91 (183)
T ss_dssp SCTTCH-HHH--HHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSS
T ss_pred eeehhh-hhh--hhhhhhcchhhhhhhhhcccccccccccccccccccc
Confidence 555432 111 3446789999999962 33333555566665654
No 492
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=77.43 E-value=2.9 Score=48.57 Aligned_cols=37 Identities=27% Similarity=0.288 Sum_probs=33.3
Q ss_pred HHHhhcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 001074 173 MRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 210 (1163)
Q Consensus 173 q~kL~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~ 210 (1163)
...|++++|.|||+|.+|..+|+||..+|+ ++.++|.
T Consensus 11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r 47 (335)
T PRK13403 11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVR 47 (335)
T ss_pred hhhhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEEC
Confidence 578999999999999999999999999999 6777763
No 493
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=77.37 E-value=2.4 Score=52.73 Aligned_cols=35 Identities=29% Similarity=0.439 Sum_probs=31.9
Q ss_pred HHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 572 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 572 kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
.|.+++|.|||.|.+|.++++.|...|+ +++.+|.
T Consensus 137 ~l~gktvgIiG~G~IG~~vA~~l~~fG~------~V~~~d~ 171 (526)
T PRK13581 137 ELYGKTLGIIGLGRIGSEVAKRAKAFGM------KVIAYDP 171 (526)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEECC
Confidence 5789999999999999999999999888 8888875
No 494
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=77.35 E-value=2.1 Score=48.89 Aligned_cols=33 Identities=30% Similarity=0.380 Sum_probs=30.1
Q ss_pred CcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCc
Q 001074 576 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 614 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~ 614 (1163)
.+|.|||+|.+|+.++..|+..|. .++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~------~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY------DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC------eEEEEeCCH
Confidence 579999999999999999999998 799998764
No 495
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=77.34 E-value=4.4 Score=39.37 Aligned_cols=84 Identities=19% Similarity=0.293 Sum_probs=0.0
Q ss_pred cEEEEecCcchHHHHHHHHHc--ccccCCCccEEEecCCcccccCcCcccCcccCcccchHHHHHHHHHH-hhCCCCeEE
Q 001074 577 KVFIVGSGALGCEFLKNVALM--GVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAT-SINPRLNIE 653 (1163)
Q Consensus 577 kVlvVGaGglGce~lknLa~~--Gv~~~~~g~i~ivD~D~Ie~SNLnRQfLf~~~dIG~~Ka~vaa~~l~-~~np~~~I~ 653 (1163)
||.|||+|..|...+..+... ++ .-..++|.+.- +++.+++... ..+.++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~-----~v~~v~d~~~~-------------------~~~~~~~~~~~~~~~~~--- 54 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDF-----EVVAVCDPDPE-------------------RAEAFAEKYGIPVYTDL--- 54 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTE-----EEEEEECSSHH-------------------HHHHHHHHTTSEEESSH---
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCc-----EEEEEEeCCHH-------------------HHHHHHHHhcccchhHH---
Q ss_pred EEeccCCcccccccchhhhc--cCCEEEEccCchHHHHHHHhhcccccccEE
Q 001074 654 ALQNRVGPETENVFDDTFWE--NITCVINALDNVNARLYVDQRCLYFQKPLL 703 (1163)
Q Consensus 654 ~~~~~v~~~~e~~~~~~f~~--~~DvVi~alDn~~aR~~v~~~c~~~~~PlI 703 (1163)
+++++ +.|+|+.|+.+ ..+..+-..|...|++++
T Consensus 55 ---------------~~ll~~~~~D~V~I~tp~-~~h~~~~~~~l~~g~~v~ 90 (120)
T PF01408_consen 55 ---------------EELLADEDVDAVIIATPP-SSHAEIAKKALEAGKHVL 90 (120)
T ss_dssp ---------------HHHHHHTTESEEEEESSG-GGHHHHHHHHHHTTSEEE
T ss_pred ---------------HHHHHhhcCCEEEEecCC-cchHHHHHHHHHcCCEEE
No 496
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=77.23 E-value=14 Score=41.72 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=25.2
Q ss_pred eEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeC
Q 001074 180 NILVSGM-QGLGAEIAKNLILAGV-KSVTLHDE 210 (1163)
Q Consensus 180 ~VlIiG~-gglGsEiaKNLvlaGV-g~itLvD~ 210 (1163)
+|+|.|. |.+|.++++.|...|- -+++++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 5899985 8999999999999883 36777763
No 497
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=77.22 E-value=9 Score=43.95 Aligned_cols=82 Identities=15% Similarity=0.061 Sum_probs=52.0
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcccCCcccccCCCccCchHHHHHHHHHHHhcCCCEEEEeecC
Q 001074 177 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 256 (1163)
Q Consensus 177 ~~s~VlIiG~gglGsEiaKNLvlaGVg~itLvD~d~V~~sDL~rqff~~~~DiGk~Kaea~~~~L~eLNp~V~V~~~~~~ 256 (1163)
...+|+|+|+|++|...+.-+...|+..+.++|.+.- |.+.+.. ..-+|+.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~-------------------rl~~a~~-~~~i~~~--------- 194 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPR-------------------RRDGATG-YEVLDPE--------- 194 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH-------------------HHHhhhh-ccccChh---------
Confidence 4568999999999999998888899988877764211 1111110 0001111
Q ss_pred CChhhcCCCcEEEEecCChhHHHHHHHHHHhcC
Q 001074 257 LTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQ 289 (1163)
Q Consensus 257 l~~e~l~~fdvVI~~~~~~~~~~~ln~~cr~~~ 289 (1163)
++.-.++|+||.|..........-+.++..+
T Consensus 195 --~~~~~g~Dvvid~~G~~~~~~~~~~~l~~~G 225 (308)
T TIGR01202 195 --KDPRRDYRAIYDASGDPSLIDTLVRRLAKGG 225 (308)
T ss_pred --hccCCCCCEEEECCCCHHHHHHHHHhhhcCc
Confidence 0011368999999987665555566777777
No 498
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=77.14 E-value=6.4 Score=45.62 Aligned_cols=23 Identities=35% Similarity=0.613 Sum_probs=21.9
Q ss_pred CcEEEEecCcchHHHHHHHHHcc
Q 001074 576 AKVFIVGSGALGCEFLKNVALMG 598 (1163)
Q Consensus 576 ~kVlvVGaGglGce~lknLa~~G 598 (1163)
.||+|+|+||+||-++-.|++.|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g 23 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG 23 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC
Confidence 48999999999999999999999
No 499
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=76.85 E-value=5.2 Score=44.51 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=29.4
Q ss_pred HHhcCcEEEEe-cCcchHHHHHHHHHcccccCCCccEEEecC
Q 001074 572 KLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDD 612 (1163)
Q Consensus 572 kL~~~kVlvVG-aGglGce~lknLa~~Gv~~~~~g~i~ivD~ 612 (1163)
++.+++++|.| .|+||.++++.|+..|. +++++|.
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~------~vv~~~~ 42 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGA------TIVFNDI 42 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC------eEEEEeC
Confidence 46778899998 58999999999999997 6777753
No 500
>PRK12861 malic enzyme; Reviewed
Probab=76.81 E-value=1.2 Score=57.15 Aligned_cols=42 Identities=24% Similarity=0.372 Sum_probs=36.0
Q ss_pred HHHhcCcEEEEecCcchHHHHHHHHHcccccCCCccEEEecCCcc
Q 001074 571 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVI 615 (1163)
Q Consensus 571 ~kL~~~kVlvVGaGglGce~lknLa~~Gv~~~~~g~i~ivD~D~I 615 (1163)
.+|.+.||++.|||+-|..+++.|...|+. ..+|+++|..=+
T Consensus 185 k~l~d~~iv~~GAGaAg~~ia~~l~~~G~~---~~~i~~~D~~Gl 226 (764)
T PRK12861 185 KSIKEVKVVTSGAGAAALACLDLLVDLGLP---VENIWVTDIEGV 226 (764)
T ss_pred CChhHcEEEEECHhHHHHHHHHHHHHcCCC---hhhEEEEcCCCe
Confidence 578899999999999999999999999992 138999997544
Done!