Query 001075
Match_columns 1163
No_of_seqs 457 out of 1515
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 15:08:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001075.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001075hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02194 PXA: PXA domain; Int 100.0 1E-34 2.2E-39 305.9 17.9 179 106-287 1-184 (185)
2 smart00313 PXA Domain associat 100.0 2.4E-33 5.2E-38 294.0 17.4 174 106-288 1-175 (176)
3 PF08628 Nexin_C: Sorting nexi 99.9 3.8E-24 8.2E-29 208.9 12.0 112 983-1123 1-113 (113)
4 cd06872 PX_SNX19_like_plant Th 99.9 2.9E-23 6.3E-28 200.6 12.1 106 666-771 1-106 (107)
5 cd06878 PX_SNX25 The phosphoin 99.9 3.4E-22 7.4E-27 198.9 11.9 109 663-772 6-127 (127)
6 cd06877 PX_SNX14 The phosphoin 99.9 1E-21 2.2E-26 193.3 12.8 107 665-772 2-119 (119)
7 KOG1259 Nischarin, modulator o 99.9 4.7E-22 1E-26 215.5 10.3 147 681-839 25-173 (490)
8 cd06875 PX_IRAS The phosphoino 99.9 1.2E-21 2.6E-26 192.1 10.7 112 665-782 3-115 (116)
9 cd06873 PX_SNX13 The phosphoin 99.9 3.7E-21 8E-26 189.9 12.3 109 663-772 2-120 (120)
10 cd07276 PX_SNX16 The phosphoin 99.8 3.7E-21 8.1E-26 187.1 11.7 107 665-772 3-110 (110)
11 cd06870 PX_CISK The phosphoino 99.8 8E-21 1.7E-25 184.4 11.3 103 668-772 5-109 (109)
12 cd07279 PX_SNX20_21_like The p 99.8 1.2E-20 2.5E-25 184.2 11.5 105 666-771 1-111 (112)
13 cd07301 PX_SNX21 The phosphoin 99.8 1.7E-20 3.8E-25 182.8 11.6 105 666-771 1-111 (112)
14 cd07280 PX_YPT35 The phosphoin 99.8 5.3E-20 1.2E-24 181.7 11.5 104 667-771 4-120 (120)
15 cd06861 PX_Vps5p The phosphoin 99.8 1.4E-19 3.1E-24 176.5 11.7 104 667-771 2-111 (112)
16 cd06897 PX_SNARE The phosphoin 99.8 1.6E-19 3.4E-24 174.9 11.5 102 666-772 1-108 (108)
17 cd07300 PX_SNX20 The phosphoin 99.8 1.9E-19 4.1E-24 176.0 11.6 105 667-772 2-112 (114)
18 cd06880 PX_SNX22 The phosphoin 99.8 3.5E-19 7.6E-24 173.2 12.2 102 666-774 1-104 (110)
19 cd06882 PX_p40phox The phospho 99.8 3.7E-19 8.1E-24 176.1 12.0 107 665-774 3-120 (123)
20 cd06886 PX_SNX27 The phosphoin 99.8 3.8E-19 8.2E-24 171.8 11.0 101 665-771 3-105 (106)
21 cd06871 PX_MONaKA The phosphoi 99.8 4.6E-19 9.9E-24 174.9 11.7 107 662-774 4-112 (120)
22 cd07277 PX_RUN The phosphoinos 99.8 4.7E-19 1E-23 174.0 10.9 105 666-773 1-107 (118)
23 cd06898 PX_SNX10 The phosphoin 99.8 6.3E-19 1.4E-23 172.2 11.7 103 668-771 2-112 (113)
24 cd07281 PX_SNX1 The phosphoino 99.8 6.2E-19 1.3E-23 175.1 11.5 105 666-771 1-123 (124)
25 cd06862 PX_SNX9_18_like The ph 99.8 5.6E-19 1.2E-23 175.2 11.0 105 666-774 1-109 (125)
26 cd06867 PX_SNX41_42 The phosph 99.8 5.5E-19 1.2E-23 172.4 10.3 100 668-772 2-112 (112)
27 cd07295 PX_Grd19 The phosphoin 99.8 1E-18 2.2E-23 171.4 12.0 107 666-773 2-115 (116)
28 cd06859 PX_SNX1_2_like The pho 99.8 7.2E-19 1.6E-23 171.9 10.9 105 666-771 1-113 (114)
29 cd06894 PX_SNX3_like The phosp 99.8 1.5E-18 3.3E-23 171.9 12.0 108 666-773 2-122 (123)
30 cd07293 PX_SNX3 The phosphoino 99.8 1.7E-18 3.8E-23 171.3 12.3 107 666-772 2-121 (123)
31 cd06865 PX_SNX_like The phosph 99.8 1.2E-18 2.7E-23 172.0 11.1 104 668-771 2-119 (120)
32 cd07286 PX_SNX18 The phosphoin 99.8 1.1E-18 2.4E-23 172.7 10.7 103 667-773 2-108 (127)
33 cd07282 PX_SNX2 The phosphoino 99.8 1.5E-18 3.2E-23 172.3 11.6 106 666-771 1-123 (124)
34 cd06864 PX_SNX4 The phosphoino 99.8 1.6E-18 3.4E-23 173.1 11.1 106 666-771 1-128 (129)
35 cd06860 PX_SNX7_30_like The ph 99.8 2.1E-18 4.5E-23 169.4 11.7 105 667-771 2-115 (116)
36 cd06876 PX_MDM1p The phosphoin 99.8 2.4E-18 5.2E-23 172.9 12.2 105 665-770 19-132 (133)
37 cd06868 PX_HS1BP3 The phosphoi 99.8 1.9E-18 4.2E-23 170.3 11.0 104 666-772 2-120 (120)
38 cd06863 PX_Atg24p The phosphoi 99.8 3E-18 6.5E-23 168.7 11.8 106 666-771 1-117 (118)
39 cd07283 PX_SNX30 The phosphoin 99.8 4.6E-18 1E-22 166.7 11.8 105 667-771 2-115 (116)
40 cd06883 PX_PI3K_C2 The phospho 99.7 5.3E-18 1.1E-22 164.7 11.6 103 668-771 2-108 (109)
41 cd06866 PX_SNX8_Mvp1p_like The 99.7 4.6E-18 1E-22 164.0 10.8 87 681-771 16-104 (105)
42 cd07285 PX_SNX9 The phosphoino 99.7 4.4E-18 9.5E-23 168.1 10.7 104 667-774 2-110 (126)
43 cd07294 PX_SNX12 The phosphoin 99.7 1.2E-17 2.6E-22 167.0 12.9 110 665-774 3-125 (132)
44 cd06881 PX_SNX15_like The phos 99.7 6.5E-18 1.4E-22 166.1 10.8 101 667-771 4-116 (117)
45 cd06893 PX_SNX19 The phosphoin 99.7 5E-18 1.1E-22 169.9 10.2 107 665-772 3-132 (132)
46 cd06874 PX_KIF16B_SNX23 The ph 99.7 8.8E-18 1.9E-22 167.0 11.5 98 666-765 1-101 (127)
47 cd06885 PX_SNX17_31 The phosph 99.7 5.3E-18 1.2E-22 163.3 9.3 98 668-771 2-102 (104)
48 cd07284 PX_SNX7 The phosphoino 99.7 1.2E-17 2.5E-22 163.8 11.4 106 666-771 1-115 (116)
49 cd07287 PX_RPK118_like The pho 99.7 2.1E-17 4.5E-22 162.3 11.3 100 668-771 5-117 (118)
50 cd06884 PX_PI3K_C2_68D The pho 99.7 6.3E-17 1.4E-21 157.3 11.7 104 667-771 3-110 (111)
51 cd07288 PX_SNX15 The phosphoin 99.7 6.3E-17 1.4E-21 159.1 10.7 100 668-771 5-117 (118)
52 cd06879 PX_UP1_plant The phosp 99.7 6.9E-17 1.5E-21 161.0 10.4 90 682-772 43-138 (138)
53 cd06895 PX_PLD The phosphoinos 99.7 1.2E-16 2.7E-21 161.1 11.5 105 665-772 3-140 (140)
54 cd06888 PX_FISH The phosphoino 99.7 2.1E-16 4.5E-21 155.4 12.1 104 667-771 3-118 (119)
55 cd06869 PX_UP2_fungi The phosp 99.7 2.4E-16 5.1E-21 155.2 11.4 86 679-771 29-118 (119)
56 cd06093 PX_domain The Phox Hom 99.7 7.6E-16 1.6E-20 146.5 12.2 103 668-771 2-106 (106)
57 cd07289 PX_PI3K_C2_alpha The p 99.6 6.6E-16 1.4E-20 148.8 11.1 102 668-771 2-108 (109)
58 cd07296 PX_PLD1 The phosphoino 99.6 6.5E-16 1.4E-20 153.3 11.0 107 665-772 3-135 (135)
59 cd06887 PX_p47phox The phospho 99.6 1.6E-15 3.4E-20 148.8 12.0 103 667-773 3-117 (118)
60 smart00312 PX PhoX homologous 99.6 7.9E-16 1.7E-20 147.3 9.6 91 680-770 9-105 (105)
61 cd06890 PX_Bem1p The phosphoin 99.6 4.7E-15 1E-19 144.9 11.6 99 667-771 2-111 (112)
62 PF00787 PX: PX domain; Inter 99.6 3E-15 6.4E-20 144.1 9.9 106 665-772 3-113 (113)
63 cd07290 PX_PI3K_C2_beta The ph 99.6 8E-15 1.7E-19 141.5 11.7 100 670-771 4-108 (109)
64 cd06891 PX_Vps17p The phosphoi 99.5 1.5E-13 3.3E-18 138.0 11.1 106 663-771 27-139 (140)
65 KOG2527 Sorting nexin SNX11 [I 99.5 4.7E-14 1E-18 137.0 6.0 107 665-772 17-130 (144)
66 cd07297 PX_PLD2 The phosphoino 99.4 8.9E-13 1.9E-17 128.4 10.2 106 665-772 3-130 (130)
67 cd06889 PX_NoxO1 The phosphoin 99.3 7.1E-12 1.5E-16 123.0 11.4 99 670-771 8-120 (121)
68 cd07291 PX_SNX5 The phosphoino 99.3 5.3E-12 1.2E-16 125.2 9.5 103 666-772 3-141 (141)
69 cd07292 PX_SNX6 The phosphoino 99.3 6.7E-12 1.4E-16 124.3 10.1 103 666-772 3-141 (141)
70 cd06892 PX_SNX5_like The phosp 99.3 1.3E-11 2.9E-16 123.7 9.8 103 666-772 3-141 (141)
71 KOG2273 Membrane coat complex 99.1 2.5E-10 5.4E-15 138.9 10.1 109 665-773 109-228 (503)
72 cd06896 PX_PI3K_C2_gamma The p 99.1 4.8E-10 1E-14 105.0 8.4 84 684-770 13-99 (101)
73 KOG2528 Sorting nexin SNX9/SH3 98.9 1.5E-09 3.3E-14 123.9 7.2 106 663-772 183-292 (490)
74 KOG2101 Intermediate filament- 98.7 1.4E-07 3E-12 110.5 12.5 93 1003-1124 270-362 (362)
75 KOG3784 Sorting nexin protein 98.4 3.9E-07 8.5E-12 103.9 6.6 88 679-772 13-102 (407)
76 COG5391 Phox homology (PX) dom 98.4 5.2E-07 1.1E-11 109.1 7.7 99 665-763 132-244 (524)
77 KOG0905 Phosphoinositide 3-kin 98.0 1.1E-05 2.5E-10 100.9 7.9 107 666-773 1376-1486(1639)
78 KOG4773 NADPH oxidase [Energy 97.6 5.1E-05 1.1E-09 85.4 4.6 115 665-782 21-147 (386)
79 cd07298 PX_RICS The phosphoino 97.5 0.00043 9.4E-09 66.7 8.2 83 683-771 27-115 (115)
80 cd07299 PX_TCGAP The phosphoin 97.0 0.0022 4.8E-08 61.4 7.7 85 681-771 23-113 (113)
81 cd07278 PX_RICS_like The phosp 97.0 0.003 6.5E-08 60.7 8.0 85 681-771 24-114 (114)
82 KOG2101 Intermediate filament- 92.8 0.076 1.6E-06 62.6 3.3 86 678-763 130-229 (362)
83 PLN02866 phospholipase D 78.6 3.7 8E-05 54.0 6.6 91 683-774 32-173 (1068)
84 KOG1660 Sorting nexin SNX6/TFA 75.8 5.3 0.00011 46.3 6.1 90 684-773 40-164 (399)
85 KOG1329 Phospholipase D1 [Lipi 50.0 15 0.00032 47.6 3.8 84 683-774 66-166 (887)
86 PF14571 Di19_C: Stress-induce 35.2 45 0.00097 32.8 3.8 25 1069-1093 80-104 (105)
87 smart00315 RGS Regulator of G 32.5 4.5 9.9E-05 38.8 -3.6 59 393-491 11-69 (118)
88 PF11674 DUF3270: Protein of u 28.8 1.2E+02 0.0026 29.2 5.3 37 20-56 43-79 (90)
89 KOG3590 Protein kinase A ancho 20.4 33 0.00071 40.8 -0.1 31 392-427 123-153 (602)
No 1
>PF02194 PXA: PXA domain; InterPro: IPR003114 This domain is found associated with PX domains. The PX (phox) domain [] occurs in a variety of eukaryotic proteins associated with intracellular signalling pathways.
Probab=100.00 E-value=1e-34 Score=305.94 Aligned_cols=179 Identities=33% Similarity=0.618 Sum_probs=158.2
Q ss_pred ChHHHHHHHHHHHHHHHhccccccccCCCCCCCcHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHH
Q 001075 106 SPVVEDAIDKFTRHLVSEWVTDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHLELFRAT 185 (1163)
Q Consensus 106 sp~Vd~~L~~li~~IIrDfV~~~WY~~IS~D~eF~~elr~~L~~~i~~l~~Rl~~VD~~~lL~~~lv~ll~~Hl~~fr~A 185 (1163)
||.|+++|++++++|+||||. +||+.||+|++|+++++..|++++.++..|+++||++++++.+++++++.|++.||.|
T Consensus 1 s~~vd~~l~~li~~I~rdfV~-sWY~~Is~d~~F~~ei~~~l~~~~~~l~~R~~~vD~~~ll~~~l~~~l~~Hl~~~r~a 79 (185)
T PF02194_consen 1 SPEVDEALHELIDLILRDFVN-SWYSKISPDPEFPNEIRRILRHALRELSQRLSRVDLVKLLLDDLLPILTKHLRDYREA 79 (185)
T ss_pred ChHHHHHHHHHHHHHHHHHHH-hhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999995 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCchhhhhhHHHHHHHH--hcc-CCCcc-cCChHHHHHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHH
Q 001075 186 QAKIEKQHSEPLTIERRDIEIRCVLA--AEN-KLHPA-LFSAEAEHKVLQCLMDSLISFTFRPQDLQCSFFRYIVRELLA 261 (1163)
Q Consensus 186 ~~~i~~~~~~~ls~E~~d~~l~~~la--~~~-~LHpa-L~s~e~E~~yLR~l~e~LL~~LLP~~d~~s~~~r~LlREILa 261 (1163)
+++.+.........+ ....+.+.+ ... .+||| +.+++.|.+|||.+++.||+.+||+++.+|++++.|+|||||
T Consensus 80 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~h~a~~~~~~~e~~ylr~l~~~ll~~llp~~~~~s~~~~~l~rEILa 157 (185)
T PF02194_consen 80 RERLSEDSSSSSQSE--SSELDLFIASEYEKAHLHPAVLSSPESELEYLRKLSERLLPFLLPPEELSSPPVRLLLREILA 157 (185)
T ss_pred Hhhhccccccccccc--hhhhHHHHHHhccccCCCchhccccchHHHHHHHHHHHHHHHHCChhhccccHHHHHHHHHHH
Confidence 998843222111111 222333333 233 49999 889999999999999999999999999999999999999999
Q ss_pred hhhhhhhcc-cCChhHHHHHHHHHHHH
Q 001075 262 CAVMRPVLN-LANPRFINERIESLAVS 287 (1163)
Q Consensus 262 ~~VL~Pli~-LSdPD~INq~Ii~ll~~ 287 (1163)
|+||.|+|+ +|||||||++|++++++
T Consensus 158 ~~VL~p~i~~lsdPd~iN~~ii~~~~~ 184 (185)
T PF02194_consen 158 CQVLLPLIDKLSDPDFINQLIIKLLEK 184 (185)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 999999999 99999999999999864
No 2
>smart00313 PXA Domain associated with PX domains. unpubl. observations
Probab=100.00 E-value=2.4e-33 Score=293.96 Aligned_cols=174 Identities=22% Similarity=0.329 Sum_probs=146.5
Q ss_pred ChHHHHHHHHHHHHHHHhccccccccCCCCCCCcHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHH
Q 001075 106 SPVVEDAIDKFTRHLVSEWVTDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHLELFRAT 185 (1163)
Q Consensus 106 sp~Vd~~L~~li~~IIrDfV~~~WY~~IS~D~eF~~elr~~L~~~i~~l~~Rl~~VD~~~lL~~~lv~ll~~Hl~~fr~A 185 (1163)
.+.|+++|+++|++||||||. +||++||+|++|+++++..|++++++++.|++++|++++++.+++..+..||+..++|
T Consensus 1 ~~~i~~~L~~li~~IirdfV~-sWY~~is~d~~F~~~i~~~l~~~~~~l~~Rl~~vD~~~ll~~~i~~~~~~~~~~a~~a 79 (176)
T smart00313 1 PAQLEEPLQLLISKIIRDYVQ-GWYKGVSEDPSFLREIEQTLEYILRQLYRRLSRQDSAHLILYEILKNLISTITNALEA 79 (176)
T ss_pred ChhhHHHHHHHHHHHHHHHHH-HHhccCCCChhHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999995 9999999999999999999999999999999999999999777776666666544433
Q ss_pred HHHHhhccCCCchhhhhhHHHHHHHHhccCCCcccCChHHHHHHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhhh
Q 001075 186 QAKIEKQHSEPLTIERRDIEIRCVLAAENKLHPALFSAEAEHKVLQCLMDSLISFTFRPQDLQCSFFRYIVRELLACAVM 265 (1163)
Q Consensus 186 ~~~i~~~~~~~ls~E~~d~~l~~~la~~~~LHpaL~s~e~E~~yLR~l~e~LL~~LLP~~d~~s~~~r~LlREILa~~VL 265 (1163)
..+.. .. . .....++...+ +..+|||+.+++.|.+|||.+++.||+.+||+++..|+++|+|+||||||+||
T Consensus 80 ~~~~~--~~-~----~~~~~~~~~~~-~~~lh~al~~~~~e~~ylR~~~~~lL~~lLp~~~~~s~~~r~llREIla~~VL 151 (176)
T smart00313 80 VLRFA--SP-Q----IPSTEIDLQYA-ETAIHKALSSPSNELTYRRQLVEMLLKFLLPEDSLCSRLHRCLLREVLAMQVI 151 (176)
T ss_pred HHccc--CC-c----CccccHHHHHh-hccCChhhcCcchHHHHHHHHHHHHHHHhCCHhhccChHHHHHHHHHHHHHHH
Confidence 22211 00 0 01122333333 34599999999999999999999999999999999999999999999999999
Q ss_pred hhhcc-cCChhHHHHHHHHHHHHH
Q 001075 266 RPVLN-LANPRFINERIESLAVSM 288 (1163)
Q Consensus 266 ~Pli~-LSdPD~INq~Ii~ll~~~ 288 (1163)
.|+++ +|||||||++|++++++.
T Consensus 152 ~p~i~~lsdPd~iN~~Ii~l~~~~ 175 (176)
T smart00313 152 LPLITHLSDPDTINLCIILLFSSS 175 (176)
T ss_pred HHHHHHccCchHHHHHHHHHhhcc
Confidence 99999 999999999999998653
No 3
>PF08628 Nexin_C: Sorting nexin C terminal; InterPro: IPR013937 This region is found at the C terminus of proteins belonging to the nexin family. It is found on proteins which also contain IPR001683 from INTERPRO.
Probab=99.91 E-value=3.8e-24 Score=208.92 Aligned_cols=112 Identities=26% Similarity=0.525 Sum_probs=104.7
Q ss_pred cch-hhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhchhHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCCCCCCCCCcc
Q 001075 983 WIR-RKAFWVAKQVLQLGMGDAFDDWLMEKIQLLRRGSVVASGIKRLEQILWPDGIFLTKRPKRRQVPPSSSSQGSPQVR 1061 (1163)
Q Consensus 983 WLR-r~~i~v~rqiLq~~~G~tIdr~i~~~i~~l~se~~v~~~I~~lr~~lWP~G~~~~~~~~r~~~~~~~~~~~~~~~~ 1061 (1163)
||| |+++.++||+++++||++||+||.+.|.++++|++|+.||..|++++||||.+++..|
T Consensus 1 Wlr~r~i~~~l~~~l~~~~g~tI~r~i~~~v~~l~se~~v~~~i~~l~~~lwP~g~~~~~~~------------------ 62 (113)
T PF08628_consen 1 WLRRRQILAVLQQILRQTFGSTIERKIRDQVEWLTSEEQVARYIQLLRESLWPNGKLAEPPP------------------ 62 (113)
T ss_pred CchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhCCCCCCCCCCC------------------
Confidence 998 9999999999999999999999999999999999999999999999999998763222
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHHHHHHHhhcCCcccccccChHHHHHHHHHHHHHhcChHH
Q 001075 1062 QPAEISSPGLSEEQKQEADRRAKFVFELMIDKAPAPVVGLVGRKEYEQCAKDLYYFIQSSVC 1123 (1163)
Q Consensus 1062 ~~~~~~~pr~s~eek~et~~~A~~v~~~L~~~~P~~L~~liG~~~~~~ga~~if~~lQ~~~l 1123 (1163)
|| |++||.+++.+|+ ..|++.+|+.|+++||.+++++|+.+||+||||++|
T Consensus 63 -------~R-t~~ek~~tr~~A~---~~L~~~~P~~l~~vvG~~~~~~g~~~if~~LQ~~~L 113 (113)
T PF08628_consen 63 -------PR-TEEEKLRTRQEAR---ELLLSLLPDTLKKVVGSENSRRGARRIFEMLQNPRL 113 (113)
T ss_pred -------CC-CHHHHHHHHHHHH---HHHHHhcHHHHHHccCHHHHHHHHHHHHHHHCCCcC
Confidence 25 9999999999997 778999999999999999999999999999999986
No 4
>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction dom
Probab=99.89 E-value=2.9e-23 Score=200.61 Aligned_cols=106 Identities=63% Similarity=1.064 Sum_probs=98.9
Q ss_pred EEEEEeceEEEcCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHhccccCCCCCCccccCCCCCHHHHHHHHHH
Q 001075 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKFFQEYNLHLPPKHFLSTGLDVSVIQERCKL 745 (1163)
Q Consensus 666 l~~~I~~~~~~~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~~~~~~p~LP~Kk~f~~n~~~~flEkRr~~ 745 (1163)
++|+|.+++++++|++.|++|.|.|....+..|+|.||||||++||++|++++...++||+|+++.+|++++|||+||.+
T Consensus 1 ~~~~v~~~~~~~~~~~~y~vY~I~v~~~~~~~w~v~RRYsdF~~L~~~L~~~~~~~~~lP~K~~~~~~~~~~fie~Rr~~ 80 (107)
T cd06872 1 LSCRVLGAEIVKSGSKSFAVYSVAVTDNENETWVVKRRFRNFETLHRRLKEVPKYNLELPPKRFLSSSLDGAFIEERCKL 80 (107)
T ss_pred CeeEEeeeEEEecCCccEEEEEEEEEECCCceEEEEehHHHHHHHHHHHHhccCCCCCCCCccccCCCCCHHHHHHHHHH
Confidence 47899999999999999999999999865779999999999999999999877667799999998668999999999999
Q ss_pred HHHHHHHHhcCCCcCCChhhhcccCc
Q 001075 746 LDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1163)
Q Consensus 746 Le~YLq~Ll~~p~l~~s~~v~~FL~~ 771 (1163)
||.||+.|+++|.+++|++|++||..
T Consensus 81 Le~yL~~l~~~p~i~~s~~~~~FL~~ 106 (107)
T cd06872 81 LDKYLKDLLVIEKVAESHEVWSFLSA 106 (107)
T ss_pred HHHHHHHHhcChhhhcCHHHHHHhcc
Confidence 99999999999999999999999974
No 5
>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S
Probab=99.87 E-value=3.4e-22 Score=198.87 Aligned_cols=109 Identities=26% Similarity=0.472 Sum_probs=98.6
Q ss_pred ceeEEEEEeceEEEcCCCcceEEEEEEEEecC---------CceEEEEeccchHHHHHHHHHh-cccc---CCCCCCccc
Q 001075 663 FFKLRCEVLGANIVKSDSRTFAVYAIAVTDSN---------NNSWSIKRRFRHFEELHRRLKF-FQEY---NLHLPPKHF 729 (1163)
Q Consensus 663 ~~~l~~~I~~~~~~~~g~k~y~vY~I~V~~~~---------~~~W~V~RRYSdF~~Lh~~L~~-~~~~---~p~LP~Kk~ 729 (1163)
..+|+|.|++++++.++++.|++|.|.|++.+ ..+|+|.||||||++||++|++ |+.. .+|+|||++
T Consensus 6 ~~~w~~~I~~~~~~~~~~~~~~vY~I~V~~~~~~~~~~~~~~~~W~V~RRYsdF~~Lh~~Lk~~~~~~~~~~lP~ppKk~ 85 (127)
T cd06878 6 LGKWRANIQSAEVTVEDDKEVPLYVIVVHVSEVGLNEDESISSGWVVTRKLSEFHDLHRKLKECSSWLKKVELPSLSKKW 85 (127)
T ss_pred CCcceEEEeeeEEEcCCCeEEEEEEEEEEEecCCCCCCCCCcceEEEEEeHHHHHHHHHHHHHHCCCccccCCCCCCccc
Confidence 45899999999998889999999999999862 3569999999999999999998 7653 356778999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCcC
Q 001075 730 LSTGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1163)
Q Consensus 730 f~~n~~~~flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~ 772 (1163)
| ++++++|||+||.+||.|||.|+++|.++++++|++||+++
T Consensus 86 ~-~~~~~~fle~Rr~~Le~YLq~ll~~~~l~~s~~l~~FLsp~ 127 (127)
T cd06878 86 F-KSIDKKFLDKSKNQLQKYLQFILEDETLCQSEALYSFLSPS 127 (127)
T ss_pred c-ccCCHHHHHHHHHHHHHHHHHHhCChhhcCCHHHHHHcCCC
Confidence 9 88999999999999999999999999999999999999874
No 6
>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N
Probab=99.86 E-value=1e-21 Score=193.32 Aligned_cols=107 Identities=23% Similarity=0.461 Sum_probs=97.9
Q ss_pred eEEEEEeceEEEcC--CCcceEEEEEEEEec-------CCceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCC
Q 001075 665 KLRCEVLGANIVKS--DSRTFAVYAIAVTDS-------NNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTG 733 (1163)
Q Consensus 665 ~l~~~I~~~~~~~~--g~k~y~vY~I~V~~~-------~~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n 733 (1163)
+|+++|+++++..+ +++.|++|.|+|+.. ....|+|.||||||.+||.+|++ |+. ..|+||+|+++ ++
T Consensus 2 ~~~i~I~~~~~~~~~~~~~~~~~Y~I~V~~~~~~~~~~~~~~w~V~RRYsdF~~L~~~L~~~~~~~~~~~lP~K~~~-~~ 80 (119)
T cd06877 2 AWRVSIPYVEMRRDPSNGERIYVFCIEVERNDRRAKGHEPQHWSVLRRYNEFYVLESKLTEFHGEFPDAPLPSRRIF-GP 80 (119)
T ss_pred cceEEeeeEEEeecCCCCcEEEEEEEEEEEccccCCCCCcCceEEEechHHHHHHHHHHHHHCCCCCCCCCcCCccc-CC
Confidence 68999999998865 789999999999963 25689999999999999999997 676 46899999999 89
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCcC
Q 001075 734 LDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1163)
Q Consensus 734 ~~~~flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~ 772 (1163)
++++|||+||.+||.||+.|+++|.+++++.|++||+.+
T Consensus 81 ~~~~~ie~Rr~~Le~fL~~ll~~~~l~~s~~~~~FL~~~ 119 (119)
T cd06877 81 KSYEFLESKREIFEEFLQKLLQKPELRGSELLYDFLSPN 119 (119)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCcccccCHHHHHhCCCC
Confidence 999999999999999999999999999999999999864
No 7
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.86 E-value=4.7e-22 Score=215.50 Aligned_cols=147 Identities=26% Similarity=0.362 Sum_probs=129.5
Q ss_pred cceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccccCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHhcC-CC
Q 001075 681 RTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQL-PT 758 (1163)
Q Consensus 681 k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~~~p~LP~Kk~f~~n~~~~flEkRr~~Le~YLq~Ll~~-p~ 758 (1163)
..|++|.|+|+.+ ...|.|.|||+||++||.+|.- ..-..--||||+++ |+.++.|+|+|+++||.|||.|+.. |.
T Consensus 25 ~~~t~y~i~v~~g-~~ew~v~~ry~df~~lheklv~e~~i~k~llppkk~i-g~~~~s~~e~r~~~leiylq~ll~~f~~ 102 (490)
T KOG1259|consen 25 GGVTYYDIKVRVG-KVEWLVERRYRDFANLHEKLVGEISISKKLLPPKKLV-GNKQPSFLEQRREQLEIYLQELLIYFRT 102 (490)
T ss_pred CceEEEEEEEEec-ceeeeehhhhhHHHHHHHHhhhhheeccccCCchhhc-CCCChhHHHHHHHHHHHHHHHHHHHccc
Confidence 4599999999999 8999999999999999999993 32223358999999 9999999999999999999999984 33
Q ss_pred cCCChhhhcccCcCchhHHHHHHhHHHHHHhccccccchhhhhhhhccchhhccccccccccCCCcccccccccccCCCC
Q 001075 759 VSGSIEVWDFLSVDSQVIIFISLSLIVYLSIINTKNVFDCLSLLSLSFLRTITYTLMQTYAFSNPFSIVETLSVDLEDKP 838 (1163)
Q Consensus 759 l~~s~~v~~FL~~~~~~i~~~~~~l~~~l~~~g~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (1163)
.. -..+-+||...-|+|+.|+|+||++++..| |++| ++++.|..+|+|+||++++++++||.+.+-+.+.
T Consensus 103 ~~-pr~la~fl~f~~y~i~~~~~~la~~~~e~g-------~~ll--~~~~~~~~~~l~~yaise~l~~~~p~~~~~~~k~ 172 (490)
T KOG1259|consen 103 EL-PRALAEFLDFNKYDIIYLLQDLAKLFNESG-------DALL--SSKKEYNLSALEVYAISERLSLPCPPSLDRGGKY 172 (490)
T ss_pred cC-HHHHHHHhccchHHHHHHHHHHHHHHHhhh-------HHHh--ccCceecccchhhhhHHHHhcCCCCCccCCCCcc
Confidence 22 257888898899999999999999999999 8999 8899999999999999999999999998777554
Q ss_pred C
Q 001075 839 S 839 (1163)
Q Consensus 839 ~ 839 (1163)
|
T Consensus 173 d 173 (490)
T KOG1259|consen 173 D 173 (490)
T ss_pred c
Confidence 3
No 8
>cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group a
Probab=99.86 E-value=1.2e-21 Score=192.11 Aligned_cols=112 Identities=28% Similarity=0.434 Sum_probs=102.4
Q ss_pred eEEEEEeceEEEcCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccccCCCCCCccccCCCCCHHHHHHHH
Q 001075 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNLHLPPKHFLSTGLDVSVIQERC 743 (1163)
Q Consensus 665 ~l~~~I~~~~~~~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~~~p~LP~Kk~f~~n~~~~flEkRr 743 (1163)
...++|++++.. +.|++|.|+|+.+ +..|.|.||||||.+||++|++ ++...++||||++| ++++++|+|+||
T Consensus 3 ~~~v~I~~~~~~----~~~~~Y~I~V~~~-~~~w~V~RRYseF~~L~~~L~~~~~~~~~~~P~Kk~~-~~~~~~~ie~Rr 76 (116)
T cd06875 3 ETKIRIPSAETV----EGYTVYIIEVKVG-SVEWTVKHRYSDFAELHDKLVAEHKVDKDLLPPKKLI-GNKSPSFVEKRR 76 (116)
T ss_pred CEEEEECCEEEE----CCEEEEEEEEEEC-CeEEEEEecHHHHHHHHHHHHHHcCcccCcCCCcccc-CCCCHHHHHHHH
Confidence 457899999876 3599999999988 7899999999999999999997 64456889999999 899999999999
Q ss_pred HHHHHHHHHHhcCCCcCCChhhhcccCcCchhHHHHHHh
Q 001075 744 KLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQVIIFISLS 782 (1163)
Q Consensus 744 ~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~~~~i~~~~~~ 782 (1163)
.+||.||+.|++++.++.++++.+||+..+++|+.++|+
T Consensus 77 ~~Le~yL~~ll~~~~~~~s~~l~~FL~~~~~~~~~~~~~ 115 (116)
T cd06875 77 KELEIYLQTLLSFFQKTMPRELAHFLDFHKYEIIGLTQN 115 (116)
T ss_pred HHHHHHHHHHHhhhcccCCHHHHHHhCCCceeEeeehhc
Confidence 999999999999999999999999999999988888775
No 9
>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, throug
Probab=99.85 E-value=3.7e-21 Score=189.86 Aligned_cols=109 Identities=38% Similarity=0.636 Sum_probs=99.6
Q ss_pred ceeEEEEEeceEEEcCCCcceEEEEEEEEecC----CceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCCCH
Q 001075 663 FFKLRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDV 736 (1163)
Q Consensus 663 ~~~l~~~I~~~~~~~~g~k~y~vY~I~V~~~~----~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~~~ 736 (1163)
.++++|+|+++++++++++.|++|.|.|...+ ...|+|.||||||.+||++|++ |+. ..|+||+|+++ +++++
T Consensus 2 ~~~~~~~i~~~~~~~~~~~~y~~Y~I~v~~~~~~~~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~lP~K~~~-~~~~~ 80 (120)
T cd06873 2 KFKLTAVIINTGIVKEHGKTYAVYAISVTRIYPNGQEESWHVYRRYSDFHDLHMRLKEKFPNLSKLSFPGKKTF-NNLDR 80 (120)
T ss_pred CcEEEEEEeccEEEccCCceEEEEEEEEEEecCCCCccceEEEeehHHHHHHHHHHHHHCcCCCCCCCCCCccc-CCCCH
Confidence 35899999999999999999999999998742 4689999999999999999997 887 46899999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcCCC----hhhhcccCcC
Q 001075 737 SVIQERCKLLDRYLKMLLQLPTVSGS----IEVWDFLSVD 772 (1163)
Q Consensus 737 ~flEkRr~~Le~YLq~Ll~~p~l~~s----~~v~~FL~~~ 772 (1163)
+|+|+||.+||.||+.|+++|.++++ ..+.+||+++
T Consensus 81 ~~ie~Rr~~Le~fL~~ll~~~~l~~~~~~~~~l~~FL~~~ 120 (120)
T cd06873 81 AFLEKRRKMLNQYLQSLLNPEVLDANPGLQEIVLDFLEPG 120 (120)
T ss_pred HHHHHHHHHHHHHHHHHhCCHhhccCHHHHHHHHHHcCCC
Confidence 99999999999999999999999998 6888898763
No 10
>cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking.
Probab=99.85 E-value=3.7e-21 Score=187.05 Aligned_cols=107 Identities=27% Similarity=0.559 Sum_probs=97.7
Q ss_pred eEEEEEeceEEEcCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccccCCCCCCccccCCCCCHHHHHHHH
Q 001075 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNLHLPPKHFLSTGLDVSVIQERC 743 (1163)
Q Consensus 665 ~l~~~I~~~~~~~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~~~p~LP~Kk~f~~n~~~~flEkRr 743 (1163)
.+++.|.+++++++ .+.|++|.|+|....+..|.|.||||||.+||.+|++ |+...|+||+|++++++++++|||+||
T Consensus 3 ~~~~~i~~~~~~~~-~~~~~vY~I~v~~~~~~~~~v~RRYsdF~~L~~~L~~~~~~~~~~lP~K~~~~~~~~~~fie~Rr 81 (110)
T cd07276 3 PIRPPILGYEVMEE-RARFTVYKIRVENKVGDSWFVFRRYTDFVRLNDKLKQMFPGFRLSLPPKRWFKDNFDPDFLEERQ 81 (110)
T ss_pred CccceeeeEEEeec-CCCeEEEEEEEEECCCCEEEEEEehHHHHHHHHHHHHHCCCCCCCCCCcceecccCCHHHHHHHH
Confidence 35788999998887 4689999999998755899999999999999999997 888778999999994479999999999
Q ss_pred HHHHHHHHHHhcCCCcCCChhhhcccCcC
Q 001075 744 KLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1163)
Q Consensus 744 ~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~ 772 (1163)
.+||.||+.|+++|.+++++.|.+||+++
T Consensus 82 ~~Lq~fL~~ll~~~~l~~s~~~~~FL~~~ 110 (110)
T cd07276 82 LGLQAFVNNIMAHKDIAKCKLVREFFCLD 110 (110)
T ss_pred HHHHHHHHHHhcCHhhhcChHHHHHhccC
Confidence 99999999999999999999999999874
No 11
>cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity.
Probab=99.84 E-value=8e-21 Score=184.44 Aligned_cols=103 Identities=27% Similarity=0.518 Sum_probs=94.1
Q ss_pred EEEeceEEEcCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccccCCCCCCccccCC-CCCHHHHHHHHHH
Q 001075 668 CEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNLHLPPKHFLST-GLDVSVIQERCKL 745 (1163)
Q Consensus 668 ~~I~~~~~~~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~~~p~LP~Kk~f~~-n~~~~flEkRr~~ 745 (1163)
+.|+++....++++.|++|.|+|..+ +..|.|.||||||++||++|++ ||...++||+|++| + +++++||++||.+
T Consensus 5 ~~i~~~~~~~~~~~~~~~Y~I~v~~~-~~~~~v~RRYseF~~L~~~L~~~~~~~~~~lP~K~~~-~~~~~~~~ie~Rr~~ 82 (109)
T cd06870 5 VSIPSSDEDREKKKRFTVYKVVVSVG-RSSWFVFRRYAEFDKLYESLKKQFPASNLKIPGKRLF-GNNFDPDFIKQRRAG 82 (109)
T ss_pred eeeccceeeccCCCCeEEEEEEEEEC-CeEEEEEeehHHHHHHHHHHHHHCcccCcCCCCCccc-ccCCCHHHHHHHHHH
Confidence 46777666666788999999999988 8899999999999999999997 88877789999999 7 8999999999999
Q ss_pred HHHHHHHHhcCCCcCCChhhhcccCcC
Q 001075 746 LDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1163)
Q Consensus 746 Le~YLq~Ll~~p~l~~s~~v~~FL~~~ 772 (1163)
||.||+.|+++|.+++++.|.+||..+
T Consensus 83 Le~fL~~ll~~p~l~~s~~~~~FL~~~ 109 (109)
T cd06870 83 LDEFIQRLVSDPKLLNHPDVRAFLQMD 109 (109)
T ss_pred HHHHHHHHhCCHhhhcChHHHHHhCcC
Confidence 999999999999999999999999863
No 12
>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal
Probab=99.84 E-value=1.2e-20 Score=184.18 Aligned_cols=105 Identities=26% Similarity=0.514 Sum_probs=97.1
Q ss_pred EEEEEeceEEEcCCCcceEEEEEEEEecC---CceEEEEeccchHHHHHHHHHh-cccc--CCCCCCccccCCCCCHHHH
Q 001075 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN---NNSWSIKRRFRHFEELHRRLKF-FQEY--NLHLPPKHFLSTGLDVSVI 739 (1163)
Q Consensus 666 l~~~I~~~~~~~~g~k~y~vY~I~V~~~~---~~~W~V~RRYSdF~~Lh~~L~~-~~~~--~p~LP~Kk~f~~n~~~~fl 739 (1163)
++|.|.++.+++++++.|++|.|+|.... ...|.|.||||||++||++|++ |+.. .|+||+|+++ ++++++||
T Consensus 1 ~~~~i~~~~~~~~~~~~yv~Y~I~v~~~~~~~~~~~~v~RRYsdF~~L~~~L~~~~p~~~~~~~lP~K~~~-~~~~~~~i 79 (112)
T cd07279 1 LKFEIVSARTVKEGEKKYVVYQLAVVQTGDPDTQPAFIERRYSDFLKLYKALRKQHPQLMAKVSFPRKVLM-GNFSSELI 79 (112)
T ss_pred CeEEeccCeEEcCCCeeEEEEEEEEEECCCCCCceEEEecchHhHHHHHHHHHHHCCCcCCCCCCCCCeec-ccCCHHHH
Confidence 47899999999999999999999998752 4679999999999999999997 8873 5789999999 89999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcCCChhhhcccCc
Q 001075 740 QERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1163)
Q Consensus 740 EkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~ 771 (1163)
|+||.+||.||+.|+++|.++++++|++||..
T Consensus 80 e~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 111 (112)
T cd07279 80 AERSRAFEQFLGHILSIPNLRDSKAFLDFLQG 111 (112)
T ss_pred HHHHHHHHHHHHHHhCCHhhhcChHHHHHhCC
Confidence 99999999999999999999999999999975
No 13
>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.
Probab=99.83 E-value=1.7e-20 Score=182.80 Aligned_cols=105 Identities=29% Similarity=0.514 Sum_probs=95.6
Q ss_pred EEEEEeceEEEcCCCcceEEEEEEEEec---CCceEEEEeccchHHHHHHHHHh-cccc--CCCCCCccccCCCCCHHHH
Q 001075 666 LRCEVLGANIVKSDSRTFAVYAIAVTDS---NNNSWSIKRRFRHFEELHRRLKF-FQEY--NLHLPPKHFLSTGLDVSVI 739 (1163)
Q Consensus 666 l~~~I~~~~~~~~g~k~y~vY~I~V~~~---~~~~W~V~RRYSdF~~Lh~~L~~-~~~~--~p~LP~Kk~f~~n~~~~fl 739 (1163)
+.++|+++.++++|+++|++|.|.|... +...|.|.||||||++||++|++ |+.. .++||+|+++ ++++++||
T Consensus 1 ~~~~v~~~~~~~~~~~~yv~Y~I~v~~~~~~~~~~~~V~RRYSdF~~L~~~L~~~~~~~~~~~~~P~K~~~-~~~~~~~i 79 (112)
T cd07301 1 LLFEVTDANVVQDAHSKYVLYTIYVIQTGQYDPSPAYISRRYSDFERLHRRLRRLFGGEMAGVSFPRKRLR-KNFTAETI 79 (112)
T ss_pred CEEEECCCeEeccCCcCEEEEEEEEEecCCCCCCceEEEeehHhHHHHHHHHHHHCCCcCCCCCCCCCccc-CCCCHHHH
Confidence 3578999999999999999999999753 25689999999999999999997 8864 3589999999 89999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcCCChhhhcccCc
Q 001075 740 QERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1163)
Q Consensus 740 EkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~ 771 (1163)
|+||.+||.||+.|+++|.++.++.|.+||.+
T Consensus 80 e~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~l 111 (112)
T cd07301 80 AKRSRAFEQFLCHLHSLPELRASPAFLEFFYL 111 (112)
T ss_pred HHHHHHHHHHHHHHhcCHHHhcChHHHHHhCC
Confidence 99999999999999999999999999999975
No 14
>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway.
Probab=99.82 E-value=5.3e-20 Score=181.70 Aligned_cols=104 Identities=26% Similarity=0.357 Sum_probs=95.4
Q ss_pred EEEEeceEEEcCC--CcceEEEEEEEEecC--CceEEEEeccchHHHHHHHHHh-cccc----CCCCCCccccCC----C
Q 001075 667 RCEVLGANIVKSD--SRTFAVYAIAVTDSN--NNSWSIKRRFRHFEELHRRLKF-FQEY----NLHLPPKHFLST----G 733 (1163)
Q Consensus 667 ~~~I~~~~~~~~g--~k~y~vY~I~V~~~~--~~~W~V~RRYSdF~~Lh~~L~~-~~~~----~p~LP~Kk~f~~----n 733 (1163)
.+.|+++.+++++ ++.|++|.|+|.... +..|.|.||||||.+||++|++ ||.. .|+||+|+++ + +
T Consensus 4 ~i~i~~~~~~~~~~~~~~yv~Y~I~v~~~~~~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~~P~lP~K~~~-~~~~~~ 82 (120)
T cd07280 4 DVNVGDYTIVGGDTGGGAYVVWKITIETKDLIGSSIVAYKRYSEFVQLREALLDEFPRHKRNEIPQLPPKVPW-YDSRVN 82 (120)
T ss_pred EEEcCCCeEECCCCCCCCEEEEEEEEEeCCCCCCcEEEEeeHHHHHHHHHHHHHHCcccccCcCCCCCCCccc-cccccc
Confidence 4789999998765 699999999999874 5799999999999999999997 8864 5899999999 5 8
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCc
Q 001075 734 LDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1163)
Q Consensus 734 ~~~~flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~ 771 (1163)
++.+|||+||.+||.||+.|+.+|.+++|+.|.+||+.
T Consensus 83 ~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 120 (120)
T cd07280 83 LNKAWLEKRRRGLQYFLNCVLLNPVFGGSPVVKEFLLP 120 (120)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCHhhccChHHHHhhCC
Confidence 99999999999999999999999999999999999974
No 15
>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P
Probab=99.81 E-value=1.4e-19 Score=176.55 Aligned_cols=104 Identities=21% Similarity=0.307 Sum_probs=95.7
Q ss_pred EEEEeceEEEcCCCcceEEEEEEEEecC----CceEEEEeccchHHHHHHHHHh-cccc-CCCCCCccccCCCCCHHHHH
Q 001075 667 RCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQEY-NLHLPPKHFLSTGLDVSVIQ 740 (1163)
Q Consensus 667 ~~~I~~~~~~~~g~k~y~vY~I~V~~~~----~~~W~V~RRYSdF~~Lh~~L~~-~~~~-~p~LP~Kk~f~~n~~~~flE 740 (1163)
.+.|.++.+++++.+.|++|.|.+.... ...|.|.||||||.+||++|+. |++. .|+||+|+++ ++++++|+|
T Consensus 2 ~i~V~dp~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~iP~lP~K~~~-~~~~~~fie 80 (112)
T cd06861 2 EITVGDPHKVGDLTSAHTVYTVRTRTTSPNFEVSSFSVLRRYRDFRWLYRQLQNNHPGVIVPPPPEKQSV-GRFDDNFVE 80 (112)
T ss_pred EEEEcCcceecCCccCeEEEEEEEEeCCCCCCCCccEEEeehHHHHHHHHHHHHHCCCCccCCCCCcccc-cCCCHHHHH
Confidence 5788899988888899999999998762 4689999999999999999997 8874 6999999999 899999999
Q ss_pred HHHHHHHHHHHHHhcCCCcCCChhhhcccCc
Q 001075 741 ERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1163)
Q Consensus 741 kRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~ 771 (1163)
+||.+||.||+.|+++|.++++++|.+||+.
T Consensus 81 ~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 111 (112)
T cd06861 81 QRRAALEKMLRKIANHPVLQKDPDFRLFLES 111 (112)
T ss_pred HHHHHHHHHHHHHHCCcccccCcHHHHhcCC
Confidence 9999999999999999999999999999975
No 16
>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.
Probab=99.80 E-value=1.6e-19 Score=174.87 Aligned_cols=102 Identities=25% Similarity=0.433 Sum_probs=93.2
Q ss_pred EEEEEeceEEEcCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-cccc-CCCCCCccccCC--CCCHHHHHH
Q 001075 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEY-NLHLPPKHFLST--GLDVSVIQE 741 (1163)
Q Consensus 666 l~~~I~~~~~~~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~~-~p~LP~Kk~f~~--n~~~~flEk 741 (1163)
++++|+++... ++.|++|.|+|... +..|.|.||||||.+||++|++ ++.. .|+||+|+++ + +.++++||+
T Consensus 1 ~~v~ip~~~~~---~~~~~~Y~I~v~~~-~~~~~v~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~-~~~~~~~~~ie~ 75 (108)
T cd06897 1 LEISIPTTSVS---PKPYTVYNIQVRLP-LRSYTVSRRYSEFVALHKQLESEVGIEPPYPLPPKSWF-LSTSSNPKLVEE 75 (108)
T ss_pred CeEEcCCeEEc---CCCeEEEEEEEEcC-CceEEEEcchHHHHHHHHHHHHHcCCCCCCCCCCcCEe-cccCCCHHHHHH
Confidence 46889998777 45699999999988 8899999999999999999997 7774 6899999999 5 899999999
Q ss_pred HHHHHHHHHHHHhcCC--CcCCChhhhcccCcC
Q 001075 742 RCKLLDRYLKMLLQLP--TVSGSIEVWDFLSVD 772 (1163)
Q Consensus 742 Rr~~Le~YLq~Ll~~p--~l~~s~~v~~FL~~~ 772 (1163)
||.+||.||+.|+++| .+++|+.|++||+++
T Consensus 76 Rr~~Le~yL~~l~~~~~~~l~~s~~~~~FL~~~ 108 (108)
T cd06897 76 RRVGLEAFLRALLNDEDSRWRNSPAVKEFLNLP 108 (108)
T ss_pred HHHHHHHHHHHHHcCCccchhcCHHHHHHhCCC
Confidence 9999999999999999 999999999999864
No 17
>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom
Probab=99.80 E-value=1.9e-19 Score=175.97 Aligned_cols=105 Identities=30% Similarity=0.436 Sum_probs=94.1
Q ss_pred EEEEeceEEEcCCCcceEEEEEEEE-ec--CCceEEEEeccchHHHHHHHHHh-cccc--CCCCCCccccCCCCCHHHHH
Q 001075 667 RCEVLGANIVKSDSRTFAVYAIAVT-DS--NNNSWSIKRRFRHFEELHRRLKF-FQEY--NLHLPPKHFLSTGLDVSVIQ 740 (1163)
Q Consensus 667 ~~~I~~~~~~~~g~k~y~vY~I~V~-~~--~~~~W~V~RRYSdF~~Lh~~L~~-~~~~--~p~LP~Kk~f~~n~~~~flE 740 (1163)
-.+|+++.+++.++++|++|.|.|. .+ +...|+|.||||||.+||.+|.+ |+.. .++||+|+++ ++++++|||
T Consensus 2 ~~~i~~~~~~~~~~~~yv~Y~i~~~~~g~~~~~~~~v~RRYSdF~~L~~~L~~~~~~~~~~~~lP~K~~~-~~~~~~~ie 80 (114)
T cd07300 2 LFEIPSARIIEQTISKHVVYQIIVIQTGSFDCNKVVIERRYSDFLKLHQELLSDFSEELEDVVFPKKKLT-GNFSEEIIA 80 (114)
T ss_pred eEEecCceeeccCCcceEEEEEEEEEecCccCceEEEEeccHhHHHHHHHHHHHccccCCCCCCCCCccc-CCCCHHHHH
Confidence 3689999998888889999999874 33 14689999999999999999986 7763 5789999999 999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcCCChhhhcccCcC
Q 001075 741 ERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1163)
Q Consensus 741 kRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~ 772 (1163)
+||.+||.||+.|+++|.++.++.|.+||..+
T Consensus 81 ~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~ 112 (114)
T cd07300 81 ERRVALRDYLTLLYSLRFVRRSQAFQDFLTHP 112 (114)
T ss_pred HHHHHHHHHHHHHhcCHhhhcChHHHHHhCCc
Confidence 99999999999999999999999999999876
No 18
>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.
Probab=99.80 E-value=3.5e-19 Score=173.23 Aligned_cols=102 Identities=23% Similarity=0.463 Sum_probs=91.9
Q ss_pred EEEEEeceEEEcC-CCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccccCCCCCCccccCCCCCHHHHHHHH
Q 001075 666 LRCEVLGANIVKS-DSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNLHLPPKHFLSTGLDVSVIQERC 743 (1163)
Q Consensus 666 l~~~I~~~~~~~~-g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~~~p~LP~Kk~f~~n~~~~flEkRr 743 (1163)
|.++|+++.++.+ +++.|++|.|+|..+ +..|.|.||||||++||++|++ |+ .|+||+|++ ++++++|||+||
T Consensus 1 ~~V~Ip~~~~~~~~~~~~y~~Y~I~v~~~-~~~~~v~RRYseF~~Lh~~L~~~~~--~p~~P~K~~--~~~~~~~ie~Rr 75 (110)
T cd06880 1 IEVSIPSYRLEVDESEKPYTVFTIEVLVN-GRRHTVEKRYSEFHALHKKLKKSIK--TPDFPPKRV--RNWNPKVLEQRR 75 (110)
T ss_pred CEEEeCcEEEeeCCCCCCeEEEEEEEEEC-CeEEEEEccHHHHHHHHHHHHHHCC--CCCCCCCCc--cCCCHHHHHHHH
Confidence 4688999988665 468999999999988 7799999999999999999997 65 789999996 478999999999
Q ss_pred HHHHHHHHHHhcCCCcCCChhhhcccCcCch
Q 001075 744 KLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQ 774 (1163)
Q Consensus 744 ~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~~~ 774 (1163)
.+||.||+.|+.+|. .+.+|.+||+.++.
T Consensus 76 ~~Le~yL~~ll~~~~--~s~~l~~FL~~~~~ 104 (110)
T cd06880 76 QGLEAYLQGLLKINE--LPKQLLDFLGVRHF 104 (110)
T ss_pred HHHHHHHHHHHcCcc--ccHHHHHHhCCCCC
Confidence 999999999999998 57999999999875
No 19
>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox
Probab=99.79 E-value=3.7e-19 Score=176.14 Aligned_cols=107 Identities=25% Similarity=0.380 Sum_probs=95.3
Q ss_pred eEEEEEeceEEEcCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccc---------cCCCCCCccccCCCC
Q 001075 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE---------YNLHLPPKHFLSTGL 734 (1163)
Q Consensus 665 ~l~~~I~~~~~~~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~---------~~p~LP~Kk~f~~n~ 734 (1163)
.|.++|.+++.. .|.+.|++|.|+|...++..|.|+||||||.+||.+|++ |+. ..|+||+|+++ ++.
T Consensus 3 ~i~~~I~~~~~~-~~~~~y~vY~I~v~~~~~~~~~V~RRYseF~~L~~~L~~~fp~~~~~~~~~~~lP~lP~k~~~-~~~ 80 (123)
T cd06882 3 AVSATIADIEEK-RGFTNYYVFVIEVKTKGGSKYLIYRRYRQFFALQSKLEERFGPEAGSSAYDCTLPTLPGKIYV-GRK 80 (123)
T ss_pred cEEEEEeeeeEE-eCCCCEEEEEEEEEEcCCCEEEEEEEHHHHHHHHHHHHHhCCcccccCCCCCccCCCCCCeec-Ccc
Confidence 588999998765 567899999999998767799999999999999999997 874 25889999999 766
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCC-cCCChhhhcccCcCch
Q 001075 735 DVSVIQERCKLLDRYLKMLLQLPT-VSGSIEVWDFLSVDSQ 774 (1163)
Q Consensus 735 ~~~flEkRr~~Le~YLq~Ll~~p~-l~~s~~v~~FL~~~~~ 774 (1163)
+ +|+|+||.+||.||+.|++.|. +++|+.|..||...+.
T Consensus 81 ~-~~~e~Rr~~Le~yl~~Ll~~p~~i~~~~~v~~Fl~~~~~ 120 (123)
T cd06882 81 A-EIAERRIPLLNRYMKELLSLPVWVLMDEDVRLFFYQTES 120 (123)
T ss_pred H-HHHHHHHHHHHHHHHHHHcCCHHhcCCHHHHHHhCCCcc
Confidence 5 9999999999999999999975 9999999999998764
No 20
>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface
Probab=99.79 E-value=3.8e-19 Score=171.79 Aligned_cols=101 Identities=27% Similarity=0.394 Sum_probs=91.6
Q ss_pred eEEEEEeceEEEcCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCCCHHHHHHH
Q 001075 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQER 742 (1163)
Q Consensus 665 ~l~~~I~~~~~~~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~~~~flEkR 742 (1163)
.+++.|+++..+.+++++|++|.|.|.. .|.|.||||||++||.+|++ ++. ..|+||+|+++ +++.+|+|+|
T Consensus 3 ~~~i~Ip~~~~~~~~~~~yvvY~I~~~~----~~~v~rRyseF~~L~~~L~~~~~~~~~p~lP~K~~~--~~~~~~ie~R 76 (106)
T cd06886 3 SVPISIPDYKHVEQNGEKFVVYNIYMAG----RQLCSRRYREFANLHQNLKKEFPDFQFPKLPGKWPF--SLSEQQLDAR 76 (106)
T ss_pred cceEecCCcceEcCCCCcEEEEEEEEcC----CEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCCcC--CCCHHHHHHH
Confidence 3789999998887778899999998862 69999999999999999997 776 46999999998 4789999999
Q ss_pred HHHHHHHHHHHhcCCCcCCChhhhcccCc
Q 001075 743 CKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1163)
Q Consensus 743 r~~Le~YLq~Ll~~p~l~~s~~v~~FL~~ 771 (1163)
|.+||.||+.|+++|.+++|+.|.+||+-
T Consensus 77 r~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 105 (106)
T cd06886 77 RRGLEQYLEKVCSIRVIGESDIMQDFLSD 105 (106)
T ss_pred HHHHHHHHHHHhcCcccccCHHHHHHhcc
Confidence 99999999999999999999999999974
No 21
>cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.79 E-value=4.6e-19 Score=174.92 Aligned_cols=107 Identities=28% Similarity=0.528 Sum_probs=94.0
Q ss_pred cceeEEEEEeceEEEcCCCcceEEEEEEEEecC--CceEEEEeccchHHHHHHHHHhccccCCCCCCccccCCCCCHHHH
Q 001075 662 SFFKLRCEVLGANIVKSDSRTFAVYAIAVTDSN--NNSWSIKRRFRHFEELHRRLKFFQEYNLHLPPKHFLSTGLDVSVI 739 (1163)
Q Consensus 662 ~~~~l~~~I~~~~~~~~g~k~y~vY~I~V~~~~--~~~W~V~RRYSdF~~Lh~~L~~~~~~~p~LP~Kk~f~~n~~~~fl 739 (1163)
...+++|.|.+.+..+ .|++|.|+|..+. +..|.|.||||||+.||++|+... ..++||+|+++ ++++++||
T Consensus 4 ~~~~~~~~i~~~~~~~----~~t~Y~I~v~~~~~~~~~w~V~RRYsdF~~Lh~~L~~~~-~~~plP~K~~~-g~~~~~~i 77 (120)
T cd06871 4 DTVPLTCVIEASQNIQ----SHTEYIIRVQRGPSPENSWQVIRRYNDFDLLNASLQISG-ISLPLPPKKLI-GNMDREFI 77 (120)
T ss_pred CCceeEEEEecCCCcc----CcEEEEEEEEECCcCCceeEEEeeHHHHHHHHHHHHHcC-CCCCCCCcccc-CCCCHHHH
Confidence 3568999999876443 4999999998752 569999999999999999999632 34579999999 89999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcCCChhhhcccCcCch
Q 001075 740 QERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQ 774 (1163)
Q Consensus 740 EkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~~~ 774 (1163)
|+||.+||.||+.|+++|.+++++.+++||+..++
T Consensus 78 e~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~~ 112 (120)
T cd06871 78 AERQQGLQNYLNVILMNPILASCLPVKKFLDPNNY 112 (120)
T ss_pred HHHHHHHHHHHHHHHcChhhccCHHHHHhcCcccC
Confidence 99999999999999999999999999999998876
No 22
>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways.
Probab=99.78 E-value=4.7e-19 Score=174.02 Aligned_cols=105 Identities=25% Similarity=0.434 Sum_probs=93.7
Q ss_pred EEEEEeceEEEcCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCCCHHHHHHHH
Q 001075 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQERC 743 (1163)
Q Consensus 666 l~~~I~~~~~~~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~~~~flEkRr 743 (1163)
++++||++.+..+|++.|++|.|.|+.. +..|.|.||||||++||++|++ ++. ..|+||+|+++ ++++.+|+|+||
T Consensus 1 ~~v~IPs~~~~g~~~~~y~vY~I~v~~~-~~~w~V~RRYseF~~L~~~L~~~~~~~~~~~~P~Kk~~-g~~~~~~ie~Rr 78 (118)
T cd07277 1 INVWIPSVFLRGKGSDAHHVYQVYIRIR-DDEWNVYRRYSEFYELHKKLKKKFPVVRSFDFPPKKAI-GNKDAKFVEERR 78 (118)
T ss_pred CEEEcCcEEEecCCCCCEEEEEEEEEEC-CCEEEEEecHHHHHHHHHHHHHHCCCCCCCCCCCCCcc-CCCCHHHHHHHH
Confidence 4789999998888889999999999988 8899999999999999999997 776 46899999999 899999999999
Q ss_pred HHHHHHHHHHhcCCCcCCChhhhcccCcCc
Q 001075 744 KLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1163)
Q Consensus 744 ~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~~ 773 (1163)
.+||.||+.|+.+ .+...++|.+||+..+
T Consensus 79 ~~Le~yL~~ll~~-~~~~~~~~~~~~~~~~ 107 (118)
T cd07277 79 KRLQVYLRRVVNT-LIQTSPELTACPSKET 107 (118)
T ss_pred HHHHHHHHHHHHH-HHHhCchhhcCCCHHH
Confidence 9999999999996 5555677888887654
No 23
>cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells.
Probab=99.78 E-value=6.3e-19 Score=172.23 Aligned_cols=103 Identities=25% Similarity=0.359 Sum_probs=91.7
Q ss_pred EEEeceEEEcC-CCcceEEEEEEEEecC----CceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCCC-HHHH
Q 001075 668 CEVLGANIVKS-DSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLD-VSVI 739 (1163)
Q Consensus 668 ~~I~~~~~~~~-g~k~y~vY~I~V~~~~----~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~~-~~fl 739 (1163)
+.|.+..+..+ +++.|++|.|.+..+. ...|.|.||||||..||.+|.+ ++. ..|+||+|+++ ++++ ++||
T Consensus 2 v~V~dP~~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~v~RRYsdF~~L~~~L~~~~~~~~~p~lP~K~~~-~~~~~~~fi 80 (113)
T cd06898 2 VEVRDPRTHKEDDWGSYTDYEIFLHTNSMCFTLKTSCVRRRYSEFVWLRNRLQKNALLIQLPSLPPKNLF-GRFNNEGFI 80 (113)
T ss_pred eEEeCCcEecCCCCCCeEEEEEEEEeCCCccCcCceEEEcchHHHHHHHHHHHHHCCCCcCCCCCCCccc-cCCCCHHHH
Confidence 56777777765 7789999999998763 3578999999999999999997 776 57899999999 7777 9999
Q ss_pred HHHHHHHHHHHHHHhcCCCcCCChhhhcccCc
Q 001075 740 QERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1163)
Q Consensus 740 EkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~ 771 (1163)
|+||.+||.||+.|+++|.+.+++.|..||..
T Consensus 81 e~Rr~~L~~fL~~i~~~p~l~~s~~l~~FL~~ 112 (113)
T cd06898 81 EERQQGLQDFLEKVLQTPLLLSDSRLHLFLQT 112 (113)
T ss_pred HHHHHHHHHHHHHHHcChhhccChHHHHhccC
Confidence 99999999999999999999999999999974
No 24
>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval
Probab=99.78 E-value=6.2e-19 Score=175.07 Aligned_cols=105 Identities=21% Similarity=0.405 Sum_probs=93.4
Q ss_pred EEEEEeceEEEcCCCcceEEEEEEEEecC----CceEEEEeccchHHHHHHHHHh-ccc---cCCCCCCccccCC-----
Q 001075 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQE---YNLHLPPKHFLST----- 732 (1163)
Q Consensus 666 l~~~I~~~~~~~~g~k~y~vY~I~V~~~~----~~~W~V~RRYSdF~~Lh~~L~~-~~~---~~p~LP~Kk~f~~----- 732 (1163)
+.|.|.+.+++.+|+++|++|.|.++... ...|.|.||||||.+||.+|++ |+. ..|++|+|+++ +
T Consensus 1 ~~i~V~~p~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iPp~P~K~~~-~~~~~~ 79 (124)
T cd07281 1 LKVSITDPEKIGDGMNAYVVYKVTTQTSLLMFRSKHFTVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLI-GMTKVK 79 (124)
T ss_pred CEEEEcCCeEeeCCcCCeEEEEEEEecCCCccCCCceEEEeehHHHHHHHHHHHHhCCCCCcEeCCCCCcccc-ccchhh
Confidence 46889999999999999999999998752 4689999999999999999997 653 35889999987 4
Q ss_pred -----CCCHHHHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCc
Q 001075 733 -----GLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1163)
Q Consensus 733 -----n~~~~flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~ 771 (1163)
+.+.+|+|+||.+||.||+.|+++|.+++++.|.+||+.
T Consensus 80 ~~~~~~~~~~fie~Rr~~Le~FL~~l~~~p~l~~s~~~~~FL~~ 123 (124)
T cd07281 80 VGKEDSSSAEFLERRRAALERYLQRIVSHPSLLQDPDVREFLEK 123 (124)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHhcCcccccChHHHHHhCC
Confidence 358999999999999999999999999999999999975
No 25
>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is loca
Probab=99.78 E-value=5.6e-19 Score=175.21 Aligned_cols=105 Identities=24% Similarity=0.394 Sum_probs=95.2
Q ss_pred EEEEEeceEEEc--CCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCCCHHHHHH
Q 001075 666 LRCEVLGANIVK--SDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQE 741 (1163)
Q Consensus 666 l~~~I~~~~~~~--~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~~~~flEk 741 (1163)
++|+|.+..... .|+++|++|.|.+.. ..|.|.||||||.+||.+|.+ |++ ..|+||+|+++ ++++.+|||+
T Consensus 1 ~~~~v~~p~~~~~~~g~~~y~~Y~I~~~~---~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~-~~~~~~fie~ 76 (125)
T cd06862 1 YHCTVTNPKKESKFKGLKSFIAYQITPTH---TNVTVSRRYKHFDWLYERLVEKYSCIAIPPLPEKQVT-GRFEEDFIEK 76 (125)
T ss_pred CEEEEcCccccCCCCCCcCEEEEEEEEec---CcEEEEEecHHHHHHHHHHHHHCCCCCCCCCCCCccc-cCCCHHHHHH
Confidence 367888887764 677999999999875 479999999999999999997 888 47999999999 8999999999
Q ss_pred HHHHHHHHHHHHhcCCCcCCChhhhcccCcCch
Q 001075 742 RCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQ 774 (1163)
Q Consensus 742 Rr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~~~ 774 (1163)
||.+|+.||+.|+++|.+++++.|.+||+.++.
T Consensus 77 Rr~~Le~fL~~I~~~p~l~~s~~~~~FL~~~~~ 109 (125)
T cd06862 77 RRERLELWMNRLARHPVLSQSEVFRHFLTCTDE 109 (125)
T ss_pred HHHHHHHHHHHHhcCHhhhcChHHHHHcCCccH
Confidence 999999999999999999999999999998864
No 26
>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back
Probab=99.78 E-value=5.5e-19 Score=172.44 Aligned_cols=100 Identities=28% Similarity=0.482 Sum_probs=88.8
Q ss_pred EEEeceEEEcCC-CcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccC--------CCCCH
Q 001075 668 CEVLGANIVKSD-SRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLS--------TGLDV 736 (1163)
Q Consensus 668 ~~I~~~~~~~~g-~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~--------~n~~~ 736 (1163)
+.|+++..+.+| ++.|++|.|+|.. |+|.||||||++||+.|++ ||+ ..|+||+|+.+. +++++
T Consensus 2 ~~i~~~~~~~~~~~~~y~~Y~I~~~~-----~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~ 76 (112)
T cd06867 2 IQIVDAGKSSEGGSGSYIVYVIRLGG-----SEVKRRYSEFESLRKNLTRLYPTLIIPPIPEKHSLKDYAKKPSKAKNDA 76 (112)
T ss_pred cEEccCccccCCCccCEEEEEEEeee-----EEEEeccHHHHHHHHHHHHHCcCCCcCCCCCcchhhhhccccccccCcH
Confidence 468888887765 6889999998753 9999999999999999997 887 469999999762 26899
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCcC
Q 001075 737 SVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1163)
Q Consensus 737 ~flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~ 772 (1163)
+|||+||.+||.||+.|+++|.+++|+.|.+||+.+
T Consensus 77 ~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 112 (112)
T cd06867 77 KIIERRKRMLQRFLNRCLQHPILRNDIVFQKFLDPN 112 (112)
T ss_pred HHHHHHHHHHHHHHHHHhcChhhccCcHHHHhcCCC
Confidence 999999999999999999999999999999999864
No 27
>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer.
Probab=99.78 E-value=1e-18 Score=171.42 Aligned_cols=107 Identities=25% Similarity=0.294 Sum_probs=95.8
Q ss_pred EEEEEeceEEEcCCCcceEEEEEEEEecC----CceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCCCHHHH
Q 001075 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVI 739 (1163)
Q Consensus 666 l~~~I~~~~~~~~g~k~y~vY~I~V~~~~----~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~~~~fl 739 (1163)
+.|.|.+.....+|++.|++|.|.+..+. ...|.|.||||||.+||.+|++ ++. ..|+||+|.++ ++++++||
T Consensus 2 ~~i~V~dP~~~~~g~~~y~~Y~I~~~t~~~~f~~~~~~V~RRysdF~~L~~~L~~~~~~~~iPplP~K~~~-~~~~~~~i 80 (116)
T cd07295 2 LEIEVRNPKTHGIGRGMFTDYEIVCRTNIPAFKLRVSSVRRRYSDFEYFRDILERESPRVMIPPLPGKIFT-NRFSDEVI 80 (116)
T ss_pred eEEEEeCCcEecCCCCCEEEEEEEEEeCCccccccceEEecChhHHHHHHHHHHHHCCCCccCCCCCCccc-cCCCHHHH
Confidence 46788888888888999999999986542 4679999999999999999997 877 46999999998 88999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcC-CChhhhcccCcCc
Q 001075 740 QERCKLLDRYLKMLLQLPTVS-GSIEVWDFLSVDS 773 (1163)
Q Consensus 740 EkRr~~Le~YLq~Ll~~p~l~-~s~~v~~FL~~~~ 773 (1163)
|+||.+||.||+.|+++|.++ +++.|.+||+.++
T Consensus 81 e~Rr~~Le~fL~~i~~~p~l~~~s~~~~~FL~~~~ 115 (116)
T cd07295 81 EERRQGLETFLQSVAGHPLLQTGSKVLAAFLQDPK 115 (116)
T ss_pred HHHHHHHHHHHHHHhcCHhhhhCCHHHHHhcCCCC
Confidence 999999999999999999998 5899999999764
No 28
>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex,
Probab=99.78 E-value=7.2e-19 Score=171.91 Aligned_cols=105 Identities=21% Similarity=0.320 Sum_probs=94.7
Q ss_pred EEEEEeceEEEcCCCcceEEEEEEEEecC----CceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCCCHH--
Q 001075 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVS-- 737 (1163)
Q Consensus 666 l~~~I~~~~~~~~g~k~y~vY~I~V~~~~----~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~~~~-- 737 (1163)
+.+.|.+++++++|+++|++|.|.|.... ...|.|.||||||.+||++|++ +++ ..|+||+|+++ ++.+..
T Consensus 1 ~~~~V~~p~~~~~~~~~y~~Y~I~v~~~~~~~~~~~~~v~RRyseF~~L~~~L~~~~~~~~~P~lP~k~~~-~~~~~~~~ 79 (114)
T cd06859 1 FEISVTDPVKVGDGMSAYVVYRVTTKTNLPDFKKSEFSVLRRYSDFLWLYERLVEKYPGRIVPPPPEKQAV-GRFKVKFE 79 (114)
T ss_pred CEEEEeCcceecCCccCEEEEEEEeecCCCCCCCCceEEEEChHHHHHHHHHHHHHCCCCEeCCCCCCccc-CccCccHH
Confidence 35789999999999999999999998752 4689999999999999999997 777 46999999999 777655
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCc
Q 001075 738 VIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1163)
Q Consensus 738 flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~ 771 (1163)
|+|+||.+||.||+.|+++|.++++++|..||+.
T Consensus 80 ~ie~Rr~~L~~fL~~i~~~p~l~~s~~~~~Fl~~ 113 (114)
T cd06859 80 FIEKRRAALERFLRRIAAHPVLRKDPDFRLFLES 113 (114)
T ss_pred HHHHHHHHHHHHHHHHhcChhhccCcHHHhhcCC
Confidence 9999999999999999999999999999999975
No 29
>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the
Probab=99.77 E-value=1.5e-18 Score=171.87 Aligned_cols=108 Identities=20% Similarity=0.296 Sum_probs=96.6
Q ss_pred EEEEEeceEEEcCCCcceEEEEEEEEecC----CceEEEEeccchHHHHHHHHHhccc-cCCCCCCcccc--------CC
Q 001075 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKFFQE-YNLHLPPKHFL--------ST 732 (1163)
Q Consensus 666 l~~~I~~~~~~~~g~k~y~vY~I~V~~~~----~~~W~V~RRYSdF~~Lh~~L~~~~~-~~p~LP~Kk~f--------~~ 732 (1163)
|.+.|.+.+.+.+|++.|++|.|.+..+. ...|.|.||||||.+||..|.+.++ ..|+||+|+++ .+
T Consensus 2 ~~i~V~dP~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~iPpLP~K~~~~~~~~~~~~~ 81 (123)
T cd06894 2 LEIDVVNPQTHGVGKKRFTDYEVRMRTNLPVFKKKESSVRRRYSDFEWLRSELERDSKIVVPPLPGKALKRQLPFRGDDG 81 (123)
T ss_pred eEEEEeCCcEecCCCcCEEEEEEEEecCCcccccCccEEEecCHHHHHHHHHHHHcCCCccCCCCCCceecccccccccC
Confidence 57888999999999999999999987552 4689999999999999999997665 56899999985 26
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCcCc
Q 001075 733 GLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1163)
Q Consensus 733 n~~~~flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~~ 773 (1163)
+++++|+|+||++|+.||+.|+++|.+++++.|..||+.+.
T Consensus 82 ~~~~~fie~Rr~~L~~fL~~i~~hp~l~~s~~~~~FL~~~~ 122 (123)
T cd06894 82 IFEEEFIEERRKGLETFINKVAGHPLAQNEKCLHMFLQEET 122 (123)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcChhhccCCHHHHhcCCCC
Confidence 89999999999999999999999999999999999998763
No 30
>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f
Probab=99.77 E-value=1.7e-18 Score=171.33 Aligned_cols=107 Identities=23% Similarity=0.308 Sum_probs=96.4
Q ss_pred EEEEEeceEEEcCCCcceEEEEEEEEecC----CceEEEEeccchHHHHHHHHHhccc-cCCCCCCccccC--------C
Q 001075 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKFFQE-YNLHLPPKHFLS--------T 732 (1163)
Q Consensus 666 l~~~I~~~~~~~~g~k~y~vY~I~V~~~~----~~~W~V~RRYSdF~~Lh~~L~~~~~-~~p~LP~Kk~f~--------~ 732 (1163)
+.+.|.+.+...+|.++|++|.|.++.+. ...|.|.||||||.+||+.|.++++ ..|+||+|+++. +
T Consensus 2 ~~i~v~dP~~~~~~~~~y~~Y~I~~~t~~p~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~iPpLP~K~~~~~~~~~~~~~ 81 (123)
T cd07293 2 LEIDVTNPQTVGVGRGRFTTYEIRLKTNLPIFKLKESTVRRRYSDFEWLRSELERESKVVVPPLPGKALFRQLPFRGDDG 81 (123)
T ss_pred eEEEecCCeEecCCCcCEEEEEEEEEeCCCccccCceEEECCchHHHHHHHHHHhccCCccCCCCCCchhhhcccccccC
Confidence 56888999999888999999999998763 3689999999999999999997655 569999999873 4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCcC
Q 001075 733 GLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1163)
Q Consensus 733 n~~~~flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~ 772 (1163)
+++++|+|+||++||.||+.|++||.+++++.|..||+-+
T Consensus 82 ~~~~~fie~Rr~~Le~FL~~i~~hP~l~~~~~l~~FL~~~ 121 (123)
T cd07293 82 IFDDSFIEERKQGLEQFLNKVAGHPLAQNERCLHMFLQDE 121 (123)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCcccccCcHHHhhcCCC
Confidence 7999999999999999999999999999999999999865
No 31
>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu
Probab=99.77 E-value=1.2e-18 Score=171.99 Aligned_cols=104 Identities=21% Similarity=0.358 Sum_probs=91.2
Q ss_pred EEEeceEEEcC------CCcceEEEEEEEEecC----CceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCC--C
Q 001075 668 CEVLGANIVKS------DSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLST--G 733 (1163)
Q Consensus 668 ~~I~~~~~~~~------g~k~y~vY~I~V~~~~----~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~--n 733 (1163)
|+|.+.+...+ +++.|++|.|++.... ...|.|.||||||.+||.+|++ ||+ ..|++|+|.++++ +
T Consensus 2 i~v~dp~~~~~~~~~~~~~~~ytvY~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~ 81 (120)
T cd06865 2 ITVSDPKKEQEPSRVPLGGPPYISYKVTTRTNIPSYTHGEFTVRRRFRDVVALADRLAEAYRGAFVPPRPDKSVVESQVM 81 (120)
T ss_pred eEecCcceecCCccccCCCCCEEEEEEEEecCCCCCCCCceEEEeehHHHHHHHHHHHHHCCCCeeCCCcCCcccccccc
Confidence 56777776654 4589999999998762 4789999999999999999997 888 5799999999843 3
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCc
Q 001075 734 LDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1163)
Q Consensus 734 ~~~~flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~ 771 (1163)
++++|||+||++||.||+.|+.+|.+++++.|..||..
T Consensus 82 ~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 119 (120)
T cd06865 82 QSAEFIEQRRVALEKYLNRLAAHPVIGLSDELRVFLTL 119 (120)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCceeecCcHHHHhccC
Confidence 69999999999999999999999999999999999975
No 32
>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki
Probab=99.77 E-value=1.1e-18 Score=172.70 Aligned_cols=103 Identities=20% Similarity=0.363 Sum_probs=93.9
Q ss_pred EEEEeceEEEc--CCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-cccc-CCCCCCccccCCCCCHHHHHHH
Q 001075 667 RCEVLGANIVK--SDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEY-NLHLPPKHFLSTGLDVSVIQER 742 (1163)
Q Consensus 667 ~~~I~~~~~~~--~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~~-~p~LP~Kk~f~~n~~~~flEkR 742 (1163)
.|+|.+.+... +|+++|++|.|..... .|.|.||||||.+||..|.+ ||.. .|+||+|+.+ ++++++||++|
T Consensus 2 ~~~v~dp~k~~~~~G~~~Yv~Y~I~~~~~---~~~V~RRYsDF~~L~~~L~~~~p~~~IPpLP~K~~~-g~f~~~FIe~R 77 (127)
T cd07286 2 QCTIDDPTKQTKFKGMKSYISYKLVPSHT---GLQVHRRYKHFDWLYARLAEKFPVISVPHIPEKQAT-GRFEEDFISKR 77 (127)
T ss_pred eEEeCCCcccCCCCCCcCEEEEEEEEecC---ceEEECCCcHHHHHHHHHHHHCCCcEeCCCcCCCcC-CCCCHHHHHHH
Confidence 47788887775 7889999999987544 69999999999999999997 8884 7999999999 99999999999
Q ss_pred HHHHHHHHHHHhcCCCcCCChhhhcccCcCc
Q 001075 743 CKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1163)
Q Consensus 743 r~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~~ 773 (1163)
|.+||.||+.|+.||.++.++.|..||+.+.
T Consensus 78 r~~Lq~FL~ria~hp~L~~s~~~~~FL~~~~ 108 (127)
T cd07286 78 RKGLIWWMDHMCSHPVLARCDAFQHFLTCPS 108 (127)
T ss_pred HHHHHHHHHHHHcCcccccChHHHHHhcCCc
Confidence 9999999999999999999999999999874
No 33
>cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sort
Probab=99.77 E-value=1.5e-18 Score=172.25 Aligned_cols=106 Identities=22% Similarity=0.400 Sum_probs=92.7
Q ss_pred EEEEEeceEEEcCCCcceEEEEEEEEec----CCceEEEEeccchHHHHHHHHHh-cc--c-cCCCCCCccccCC-----
Q 001075 666 LRCEVLGANIVKSDSRTFAVYAIAVTDS----NNNSWSIKRRFRHFEELHRRLKF-FQ--E-YNLHLPPKHFLST----- 732 (1163)
Q Consensus 666 l~~~I~~~~~~~~g~k~y~vY~I~V~~~----~~~~W~V~RRYSdF~~Lh~~L~~-~~--~-~~p~LP~Kk~f~~----- 732 (1163)
+.+.|.+.+...+|.+.|++|.|++... ....|.|.||||||.+||.+|++ |+ + ..|++|+|++++.
T Consensus 1 ~~i~V~dP~~~~~g~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~g~~iPplP~K~~~~~~~~~~ 80 (124)
T cd07282 1 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSRSEFSVRRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKV 80 (124)
T ss_pred CEEEEeCCeEecCCccCeEEEEEEeccCCCccCCCceEEEEehHHHHHHHHHHHHhCCCCCceeCCCCCCcccccccccc
Confidence 3578888888888889999999998753 14689999999999999999997 76 3 3699999998731
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCc
Q 001075 733 ----GLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1163)
Q Consensus 733 ----n~~~~flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~ 771 (1163)
+++++|+|+||.+||.||+.|+++|.+++++.|..||+.
T Consensus 81 ~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 123 (124)
T cd07282 81 GKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLES 123 (124)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHhcCcccccChHHHHhhcC
Confidence 358999999999999999999999999999999999974
No 34
>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of
Probab=99.77 E-value=1.6e-18 Score=173.13 Aligned_cols=106 Identities=24% Similarity=0.307 Sum_probs=91.5
Q ss_pred EEEEEeceEEEcCCC-----cceEEEEEEEEecC--------CceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCcccc
Q 001075 666 LRCEVLGANIVKSDS-----RTFAVYAIAVTDSN--------NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFL 730 (1163)
Q Consensus 666 l~~~I~~~~~~~~g~-----k~y~vY~I~V~~~~--------~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f 730 (1163)
+++.|++.+...+|+ ++|++|.|+|.... ...|.|.||||||++||.+|.+ |+. ..|+||+|+++
T Consensus 1 ~~i~v~~~e~~~~~~~~~~~~~y~vY~I~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~ 80 (129)
T cd06864 1 MEITVTEAEKRTGGSAMNLKETYTVYLIETKIVEHESEEGLSKKLSSLWRRYSEFELLRNYLVVTYPYVIVPPLPEKRAM 80 (129)
T ss_pred CeeEecChhhccCCCCCCCCCCeEEEEEEEEecCCCcccccccCceEEEeCcHHHHHHHHHHHHHCCCCCCCCCCCccee
Confidence 356788887765543 48999999999763 2478999999999999999997 887 46999999864
Q ss_pred -------CCCCCHHHHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCc
Q 001075 731 -------STGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1163)
Q Consensus 731 -------~~n~~~~flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~ 771 (1163)
.++++++|+|+||++||.||+.|+++|.++++++|.+||..
T Consensus 81 ~~~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~~ 128 (129)
T cd06864 81 FMWQKLSSDTFDPDFVERRRAGLENFLLRVAGHPELCQDKIFLEFLTH 128 (129)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHHHcChhhhcCcHHHHhcCC
Confidence 25889999999999999999999999999999999999975
No 35
>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal
Probab=99.77 E-value=2.1e-18 Score=169.36 Aligned_cols=105 Identities=19% Similarity=0.336 Sum_probs=93.9
Q ss_pred EEEEeceEEEcCCCcceEEEEEEEEec----CCceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccC---CCCCHH
Q 001075 667 RCEVLGANIVKSDSRTFAVYAIAVTDS----NNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLS---TGLDVS 737 (1163)
Q Consensus 667 ~~~I~~~~~~~~g~k~y~vY~I~V~~~----~~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~---~n~~~~ 737 (1163)
.+.|.+.+...++.++|++|.|++... +...|.|.|||+||.+||.+|.+ |++ ..|+||+|+.+. ++++++
T Consensus 2 ~v~V~dP~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPpLP~K~~~~~~~~~~~~~ 81 (116)
T cd06860 2 FITVDNPEKHVTTLETYITYRVTTKTTRSEFDSSEYSVRRRYQDFLWLRQKLEESHPTHIIPPLPEKHSVKGLLDRFSPE 81 (116)
T ss_pred EEEEcCCeeccCCCcCEEEEEEEEeeCCCCcCCCceEEEeeHHHHHHHHHHHHHHCCCCccCCCCCcchhhhhcccCCHH
Confidence 467888888888888999999998864 25689999999999999999997 887 469999999842 578999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCc
Q 001075 738 VIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1163)
Q Consensus 738 flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~ 771 (1163)
|+|+||++||.||+.|+.+|.+++++.|..||+.
T Consensus 82 fie~Rr~~Le~fL~~i~~hp~l~~s~~l~~FLt~ 115 (116)
T cd06860 82 FVATRMRALHKFLNRIVEHPVLSFNEHLKVFLTA 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHcCcccccCcHHHHhhcC
Confidence 9999999999999999999999999999999974
No 36
>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regul
Probab=99.76 E-value=2.4e-18 Score=172.88 Aligned_cols=105 Identities=32% Similarity=0.552 Sum_probs=94.0
Q ss_pred eEEEEEeceEEEcC-CCcceEEEEEEEEecCC----ceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCC--C
Q 001075 665 KLRCEVLGANIVKS-DSRTFAVYAIAVTDSNN----NSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGL--D 735 (1163)
Q Consensus 665 ~l~~~I~~~~~~~~-g~k~y~vY~I~V~~~~~----~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~--~ 735 (1163)
...+.|+++.+..+ +++.|++|.|+|+..++ ..|.|.||||||.+||++|++ |+. ..|+||+|+++ ++. +
T Consensus 19 ~~~i~I~~~~~~~~~~~k~~~~Y~I~v~~~~~~~~~~~w~V~RRYseF~~Lh~~L~~~~~~~~~p~~P~K~~~-~~~~~~ 97 (133)
T cd06876 19 RTRVSIQSYISDVEEEGKEFVVYLIEVQRLNNDDQSSGWVVARRYSEFLELHKYLKKRYPGVLKLDFPQKRKI-SLKYSK 97 (133)
T ss_pred cceEEEeeEEeeecCCCceEEEEEEEEEEcCCCCCcccEEEEeEhHHHHHHHHHHHHHCcCCCCCCCCccccc-cCccCC
Confidence 45899999987654 47899999999998642 489999999999999999997 887 46899999999 666 8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCChhhhcccC
Q 001075 736 VSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLS 770 (1163)
Q Consensus 736 ~~flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~ 770 (1163)
.+|+++||.+|+.||+.|+++|.+++++.|.+||+
T Consensus 98 ~~~ie~Rr~~Le~yL~~Ll~~~~l~~s~~l~~FLs 132 (133)
T cd06876 98 TLLVEERRKALEKYLQELLKIPEVCEDEEFRKFLS 132 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccccCChHHHHhhc
Confidence 99999999999999999999999999999999995
No 37
>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.76 E-value=1.9e-18 Score=170.32 Aligned_cols=104 Identities=21% Similarity=0.369 Sum_probs=90.2
Q ss_pred EEEEEeceEEEc-CCCcceEEEEEEEEecC----C--------ceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCcccc
Q 001075 666 LRCEVLGANIVK-SDSRTFAVYAIAVTDSN----N--------NSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFL 730 (1163)
Q Consensus 666 l~~~I~~~~~~~-~g~k~y~vY~I~V~~~~----~--------~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f 730 (1163)
|.+.|+.++... ++++.|++|.|.|.... . ..|.|.||||||++||++|++ ||. ..|+||+|+++
T Consensus 2 ~~v~vp~~~~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~ 81 (120)
T cd06868 2 LDLTVPEYQEIRGKTSSGHVLYQIVVVTRLAAFKSAKHKEEDVVQFMVSKKYSEFEELYKKLSEKYPGTILPPLPRKALF 81 (120)
T ss_pred CceecCCceeecCCCCCCeEEEEEEEEeCchhccCcccccCCceeEEEeCCcHHHHHHHHHHHHHCCCCCCCCCCCCccc
Confidence 457788886554 46788999999987541 1 279999999999999999997 887 47999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCcC
Q 001075 731 STGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1163)
Q Consensus 731 ~~n~~~~flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~ 772 (1163)
+ +++|+|+||.+||.||+.|+++|.+++|++|.+||.++
T Consensus 82 -~--~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~ 120 (120)
T cd06868 82 -V--SESDIRERRAAFNDFMRFISKDEKLANCPELLEFLGVK 120 (120)
T ss_pred -C--CHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHHHhcCC
Confidence 5 89999999999999999999999999999999999863
No 38
>cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.
Probab=99.76 E-value=3e-18 Score=168.74 Aligned_cols=106 Identities=27% Similarity=0.411 Sum_probs=93.0
Q ss_pred EEEEEeceEEEc-CCCcceEEEEEEEEecC----CceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccC----CCC
Q 001075 666 LRCEVLGANIVK-SDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLS----TGL 734 (1163)
Q Consensus 666 l~~~I~~~~~~~-~g~k~y~vY~I~V~~~~----~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~----~n~ 734 (1163)
+.|.|.+..... ++++.|++|.|+|.... ...|.|.||||||++||+.|.+ ||+ ..|+||+|+.+. +++
T Consensus 1 ~~i~V~dP~~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~ 80 (118)
T cd06863 1 LECLVSDPQKELDGSSDTYISYLITTKTNLPSFSRKEFKVRRRYSDFVFLHECLSNDFPACVVPPLPDKHRLEYITGDRF 80 (118)
T ss_pred CEEEEeCcccccCCCccCEEEEEEEEeeCCCCcccCceEEEecHHHHHHHHHHHHHHCcCCcCCCCCCccccccccccCC
Confidence 457788888765 67789999999998653 2579999999999999999997 888 479999999762 568
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCc
Q 001075 735 DVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1163)
Q Consensus 735 ~~~flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~ 771 (1163)
+++|+|+||++||.||+.|+.+|.+++++.|..||+-
T Consensus 81 ~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~s 117 (118)
T cd06863 81 SPEFITRRAQSLQRFLRRISLHPVLSQSKILHQFLES 117 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCcccccCcHHHhhcCC
Confidence 9999999999999999999999999999999999964
No 39
>cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32
Probab=99.75 E-value=4.6e-18 Score=166.66 Aligned_cols=105 Identities=21% Similarity=0.317 Sum_probs=93.8
Q ss_pred EEEEeceEEEcCCCcceEEEEEEEEecC----CceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccC---CCCCHH
Q 001075 667 RCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLS---TGLDVS 737 (1163)
Q Consensus 667 ~~~I~~~~~~~~g~k~y~vY~I~V~~~~----~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~---~n~~~~ 737 (1163)
.|.|.+.....+|++.|++|.|.+.... ...|.|.||||||.+||+.|.+ ++. ..|+||+|+++. ++++++
T Consensus 2 ~i~V~dP~~~~~~~~~y~~Y~I~t~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~p~~~iPpLP~K~~~~~~~~~~~~~ 81 (116)
T cd07283 2 FVTVDDPKKHVCTMETYITYRVTTKTTRTEFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLPEKFVVKGVVDRFSEE 81 (116)
T ss_pred EEEEcCcceecCCCcCeEEEEEEEecCCCCcccCceEEeCCccHHHHHHHHHHHhCCCcccCCCCCcccccccccCCCHH
Confidence 5788888888888899999999998763 3689999999999999999997 887 579999998763 457899
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCc
Q 001075 738 VIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1163)
Q Consensus 738 flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~ 771 (1163)
|+|+||++||.||+.|+++|.+++++.|..||..
T Consensus 82 fie~Rr~~Le~FL~~i~~hp~L~~s~~~~~FLt~ 115 (116)
T cd07283 82 FVETRRKALDKFLKRIADHPVLSFNEHFNVFLTA 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHcCcccccCcHHHHhhcC
Confidence 9999999999999999999999999999999975
No 40
>cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and d
Probab=99.75 E-value=5.3e-18 Score=164.70 Aligned_cols=103 Identities=28% Similarity=0.417 Sum_probs=89.2
Q ss_pred EEEeceEEEcCCCcceEEEEEEEEecC-CceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCCCHHHHHHHHH
Q 001075 668 CEVLGANIVKSDSRTFAVYAIAVTDSN-NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQERCK 744 (1163)
Q Consensus 668 ~~I~~~~~~~~g~k~y~vY~I~V~~~~-~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~~~~flEkRr~ 744 (1163)
++|.|++...+ ...|++|.|.|+..+ +..|.|+||||||++||++|++ ||. ..|+||+|++++.+.+.+++++|+.
T Consensus 2 ~~i~~~~~~~~-~~~~~vY~I~V~~~~~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lp~lP~k~~~~~~~~~~~~e~R~~ 80 (109)
T cd06883 2 VSVFGFQKRYS-PEKYYIYVVKVTRENQTEPSFVFRTFEEFQELHNKLSLLFPSLKLPSFPARVVLGRSHIKQVAERRKI 80 (109)
T ss_pred cEEEEEEEEec-CCceEEEEEEEEECCCCCeEEEEecHHHHHHHHHHHHHHCCCCcCCCCCCCcccCccchhHHHHHHHH
Confidence 57888866544 345999999999985 5789999999999999999997 887 4689999999844456789999999
Q ss_pred HHHHHHHHHhcC-CCcCCChhhhcccCc
Q 001075 745 LLDRYLKMLLQL-PTVSGSIEVWDFLSV 771 (1163)
Q Consensus 745 ~Le~YLq~Ll~~-p~l~~s~~v~~FL~~ 771 (1163)
+||.||+.|++. +.+++|+.|++||.+
T Consensus 81 ~Le~YL~~Ll~~~~~i~~s~~v~~F~~~ 108 (109)
T cd06883 81 ELNSYLKSLFNASPEVAESDLVYTFFHP 108 (109)
T ss_pred HHHHHHHHHHcCCHHHhcCHHHHHhcCC
Confidence 999999999998 589999999999975
No 41
>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles.
Probab=99.75 E-value=4.6e-18 Score=164.03 Aligned_cols=87 Identities=24% Similarity=0.342 Sum_probs=81.1
Q ss_pred cceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 001075 681 RTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQLPT 758 (1163)
Q Consensus 681 k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~~~~flEkRr~~Le~YLq~Ll~~p~ 758 (1163)
..|++|.|.+... .|.|.||||||++||++|++ |+. ..|+||+|+++ ++++++|+++||.+||.||+.|+++|.
T Consensus 16 ~~y~~Y~i~~~~~---~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~-~~~~~~~ie~Rr~~Le~fL~~l~~~p~ 91 (105)
T cd06866 16 LKHVEYEVSSKRF---KSTVYRRYSDFVWLHEYLLKRYPYRMVPALPPKRIG-GSADREFLEARRRGLSRFLNLVARHPV 91 (105)
T ss_pred cCCEEEEEEEecC---CEEEEEEhHHHHHHHHHHHHHCCCCcCCCCCCCccc-cCCCHHHHHHHHHHHHHHHHHHhcChh
Confidence 4799999998754 79999999999999999997 887 56899999999 899999999999999999999999999
Q ss_pred cCCChhhhcccCc
Q 001075 759 VSGSIEVWDFLSV 771 (1163)
Q Consensus 759 l~~s~~v~~FL~~ 771 (1163)
+++++.|.+||..
T Consensus 92 l~~s~~l~~FL~~ 104 (105)
T cd06866 92 LSEDELVRTFLTE 104 (105)
T ss_pred hccChHHHhhcCC
Confidence 9999999999974
No 42
>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. T
Probab=99.75 E-value=4.4e-18 Score=168.07 Aligned_cols=104 Identities=22% Similarity=0.364 Sum_probs=93.5
Q ss_pred EEEEeceEEEc--CCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-cccc--CCCCCCccccCCCCCHHHHHH
Q 001075 667 RCEVLGANIVK--SDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEY--NLHLPPKHFLSTGLDVSVIQE 741 (1163)
Q Consensus 667 ~~~I~~~~~~~--~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~~--~p~LP~Kk~f~~n~~~~flEk 741 (1163)
.|.|.+.+... .|.++|+.|.|..... .|.|.||||||.+||++|.. |+.. .|++|+|+++ ++++++||++
T Consensus 2 ~~~V~dp~k~~~~~g~~~Yv~Y~I~~~~~---~~~V~RRYsDF~~L~~~L~~~~~~~i~vPplP~K~~~-g~f~~~FIe~ 77 (126)
T cd07285 2 DCVVADPRKGSKMYGLKSYIEYQLTPTNT---NRSVNHRYKHFDWLYERLLVKFGLAIPIPSLPDKQVT-GRFEEEFIKM 77 (126)
T ss_pred EEEEcCcccccCCCCCcCeEEEEEEeccC---CeEeeCCccHHHHHHHHHHHhcCCCcccCCCCCcccc-CCCCHHHHHH
Confidence 47778887754 6678999999987755 68999999999999999997 7653 6999999999 8999999999
Q ss_pred HHHHHHHHHHHHhcCCCcCCChhhhcccCcCch
Q 001075 742 RCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQ 774 (1163)
Q Consensus 742 Rr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~~~ 774 (1163)
||.+||.||+.|++||.+++++.|..||..++.
T Consensus 78 Rr~~Le~FL~ri~~hP~L~~~~~l~~FL~~~~~ 110 (126)
T cd07285 78 RMERLQAWMTRMCRHPVISESEVFQQFLNFRDE 110 (126)
T ss_pred HHHHHHHHHHHHHcCcCcCCCcHHHHHhCCCCH
Confidence 999999999999999999999999999999765
No 43
>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated.
Probab=99.74 E-value=1.2e-17 Score=167.04 Aligned_cols=110 Identities=19% Similarity=0.278 Sum_probs=98.0
Q ss_pred eEEEEEeceEEEcCCCcceEEEEEEEEecC----CceEEEEeccchHHHHHHHHHhccc-cCCCCCCccccC--------
Q 001075 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKFFQE-YNLHLPPKHFLS-------- 731 (1163)
Q Consensus 665 ~l~~~I~~~~~~~~g~k~y~vY~I~V~~~~----~~~W~V~RRYSdF~~Lh~~L~~~~~-~~p~LP~Kk~f~-------- 731 (1163)
-+.+.|.+.+++.+|.++|++|.|.+.... ...|.|.||||||.+||++|.+.++ ..|+||+|+++.
T Consensus 3 ~~~i~v~dP~~~~~g~~~yt~Y~V~~~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~g~~iPpLP~K~~~~~~~~~~~~ 82 (132)
T cd07294 3 FLEIDIFNPQTVGVGRNRFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRGDE 82 (132)
T ss_pred eEEEEeeCCeEecCCCCCEEEEEEEEEeCCCCcccceeEEeCCccHHHHHHHHHHHcCCCccCCCCCCceeccccccccc
Confidence 478899999999999999999999987552 4689999999999999999997655 568999999731
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCcCch
Q 001075 732 TGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQ 774 (1163)
Q Consensus 732 ~n~~~~flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~~~ 774 (1163)
++++++|+|+||.+||.||+.|+++|.+++++.|..||+.+..
T Consensus 83 ~~~~~~fie~Rr~~Le~FL~~i~~hp~l~~~~~l~~FL~~~~~ 125 (132)
T cd07294 83 GIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQDETI 125 (132)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhcCCCCc
Confidence 4789999999999999999999999999999999999998865
No 44
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont
Probab=99.74 E-value=6.5e-18 Score=166.12 Aligned_cols=101 Identities=20% Similarity=0.308 Sum_probs=88.1
Q ss_pred EEEEeceEEEcCCCcceEEEEEEEEec------CCceEEEEeccchHHHHHHHHHh-ccc-----cCCCCCCccccCCCC
Q 001075 667 RCEVLGANIVKSDSRTFAVYAIAVTDS------NNNSWSIKRRFRHFEELHRRLKF-FQE-----YNLHLPPKHFLSTGL 734 (1163)
Q Consensus 667 ~~~I~~~~~~~~g~k~y~vY~I~V~~~------~~~~W~V~RRYSdF~~Lh~~L~~-~~~-----~~p~LP~Kk~f~~n~ 734 (1163)
+++|.++...+ ++|++|.|.+... +...|.|.||||||.+||++|++ ++. ..|+||+|+++ +++
T Consensus 4 ~~~V~d~~~~~---~~~t~Y~I~~~~~~~~~~~~~~~~~V~rRYsdF~~L~~~L~~~~~~~~~~~~~P~lP~K~~~-g~~ 79 (117)
T cd06881 4 SFTVTDTRRHK---KGYTEYKITSKVFSRSVPEDVSEVVVWKRYSDFKKLHRELSRLHKQLYLSGSFPPFPKGKYF-GRF 79 (117)
T ss_pred EEEecCcceec---CceEEEEEEEEecCCCCccccceEEEECcHHHHHHHHHHHHHHhhhccccCcCCCCCCCccc-CCC
Confidence 56677777664 4699999999852 13589999999999999999997 643 35899999999 899
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCc
Q 001075 735 DVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1163)
Q Consensus 735 ~~~flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~ 771 (1163)
+++||++||.+||.||+.|+++|.+++++.|.+||+-
T Consensus 80 ~~~~IeeRr~~Le~fL~~i~~~p~l~~s~~~~~Fl~~ 116 (117)
T cd06881 80 DAAVIEERRQAILELLDFVGNHPALYQSSAFQQFFEE 116 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhcc
Confidence 9999999999999999999999999999999999973
No 45
>cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found
Probab=99.74 E-value=5e-18 Score=169.89 Aligned_cols=107 Identities=25% Similarity=0.457 Sum_probs=90.0
Q ss_pred eEEEEEeceEEEcCCCcceEEEEEEEEecC---------------CceEEEEeccchHHHHHHHHHhccc-c---CCCCC
Q 001075 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSN---------------NNSWSIKRRFRHFEELHRRLKFFQE-Y---NLHLP 725 (1163)
Q Consensus 665 ~l~~~I~~~~~~~~g~k~y~vY~I~V~~~~---------------~~~W~V~RRYSdF~~Lh~~L~~~~~-~---~p~LP 725 (1163)
.|.-.|++.+.+++|++.|++|+|.+.... ...|.|.||||||.+||++|++.+. . .+.+|
T Consensus 3 ~i~~~i~~~e~~g~g~~~y~~Y~V~~~t~~~~~~~~~~~~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~~~~~~~~P 82 (132)
T cd06893 3 RIPKTITAKEYKGTGTHPYTLYTVQYETILDVQSEQNPNAASEQPLATHTVNRRFREFLTLQTRLEENPKFRKIMNVKGP 82 (132)
T ss_pred cccceeecchhcCCCCCCeEEEEEEeccCcchhcccccccccccccCeEEEECchHHHHHHHHHHHHccCcccccccCCC
Confidence 345567777888888999999999985421 3689999999999999999997432 1 24677
Q ss_pred Cccc----cCCCCCHHHHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCcC
Q 001075 726 PKHF----LSTGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1163)
Q Consensus 726 ~Kk~----f~~n~~~~flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~ 772 (1163)
+|++ + ++++++|||+||.+||.||+.|+++|.++++++|++||++.
T Consensus 83 ~k~~p~lp~-g~~d~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~ 132 (132)
T cd06893 83 PKRLFDLPF-GNMDKDKIEARRGLLETFLRQLCSIPEISNSEEVQEFLAYG 132 (132)
T ss_pred CccCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHcCHhhhcCHHHHHHHccC
Confidence 7776 5 89999999999999999999999999999999999999863
No 46
>cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endoso
Probab=99.74 E-value=8.8e-18 Score=166.99 Aligned_cols=98 Identities=20% Similarity=0.447 Sum_probs=88.0
Q ss_pred EEEEEeceEEEcCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCCCHHHHHHHH
Q 001075 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQERC 743 (1163)
Q Consensus 666 l~~~I~~~~~~~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~~~~flEkRr 743 (1163)
|+++|+++....+|.+.|++|.|+|+.. +..|+|+||||||.+||++|++ |+. ..++||+|++| ++.+++|+|+||
T Consensus 1 ~~i~Ip~~~~~~~~~~~y~vY~I~v~~~-~~~w~V~RRYseF~~Lh~~L~~~~p~~~~~~fP~Kk~~-g~~~~~~ie~Rr 78 (127)
T cd06874 1 IKITIPRYVLRGQGKDEHFEFEVKITVL-DETWTVFRRYSRFRELHKTMKLKYPEVAALEFPPKKLF-GNKSERVAKERR 78 (127)
T ss_pred CEEEECCeEEecCCCCcEEEEEEEEEEC-CcEEEEEeeHHHHHHHHHHHHHHcCCCccCCCCCceec-CCCCHHHHHHHH
Confidence 4688999988777888999999999987 7789999999999999999997 876 46889999999 899999999999
Q ss_pred HHHHHHHHHHhcC-CCcCCChhh
Q 001075 744 KLLDRYLKMLLQL-PTVSGSIEV 765 (1163)
Q Consensus 744 ~~Le~YLq~Ll~~-p~l~~s~~v 765 (1163)
.+||.||+.|++. +.+..|+.+
T Consensus 79 ~~Le~yL~~Ll~~~~~~~~~~~~ 101 (127)
T cd06874 79 RQLETYLRNFFSVCLKLPACPLY 101 (127)
T ss_pred HHHHHHHHHHHHhchhccCCccc
Confidence 9999999999996 677777654
No 47
>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me
Probab=99.74 E-value=5.3e-18 Score=163.35 Aligned_cols=98 Identities=23% Similarity=0.384 Sum_probs=87.5
Q ss_pred EEEeceEEEcC-CCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCCCHHHHHHHHH
Q 001075 668 CEVLGANIVKS-DSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQERCK 744 (1163)
Q Consensus 668 ~~I~~~~~~~~-g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~~~~flEkRr~ 744 (1163)
++|++++...+ ++++|++|.|.|+ ..|.+.||||||.+||.+|.+ ++. ..|+||+|+++ + ++.+|||+||.
T Consensus 2 v~I~~~~~~~~~~~~~y~~Y~I~v~----~~~~~~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~-~-~~~~~ie~Rr~ 75 (104)
T cd06885 2 FSIPDTQELSDEGGSTYVAYNIHIN----GVLHCSVRYSQLHGLNEQLKKEFGNRKLPPFPPKKLL-P-LTPAQLEERRL 75 (104)
T ss_pred CccCCcceeccCCCCcEEEEEEEEC----CcEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCccc-c-CCHHHHHHHHH
Confidence 56888876554 8899999999985 258899999999999999997 887 57999999998 4 77899999999
Q ss_pred HHHHHHHHHhcCCCcCCChhhhcccCc
Q 001075 745 LLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1163)
Q Consensus 745 ~Le~YLq~Ll~~p~l~~s~~v~~FL~~ 771 (1163)
+||.||+.|+++|.++.++.|.+||..
T Consensus 76 ~Le~yL~~l~~~~~l~~s~~~~~FL~~ 102 (104)
T cd06885 76 QLEKYLQAVVQDPRIANSDIFNSFLLN 102 (104)
T ss_pred HHHHHHHHHhcChhhccCHHHHHHHHh
Confidence 999999999999999999999999963
No 48
>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30,
Probab=99.73 E-value=1.2e-17 Score=163.77 Aligned_cols=106 Identities=22% Similarity=0.328 Sum_probs=94.1
Q ss_pred EEEEEeceEEEcCCCcceEEEEEEEEecC----CceEEEEeccchHHHHHHHHHh-cccc-CCCCCCccccC---CCCCH
Q 001075 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQEY-NLHLPPKHFLS---TGLDV 736 (1163)
Q Consensus 666 l~~~I~~~~~~~~g~k~y~vY~I~V~~~~----~~~W~V~RRYSdF~~Lh~~L~~-~~~~-~p~LP~Kk~f~---~n~~~ 736 (1163)
+.+.|.+.+...+|++.|+.|.|.+.... ...|.|.||||||.+||..|.+ ++.. .|++|+|+++. +++++
T Consensus 1 ~~i~V~dP~~~~~~~~~y~~Y~V~t~t~~~~~~~~~~~V~RRysDF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~ 80 (116)
T cd07284 1 IFITVDEPESHVTAIETFITYRVMTKTSRSEFDSSEFEVRRRYQDFLWLKGRLEEAHPTLIIPPLPEKFVMKGMVERFNE 80 (116)
T ss_pred CEEEEeCcceeecCCcCeEEEEEEEeeCCCCcCCCceEEeCCchHHHHHHHHHHHHCCCceeCCCCCcchhhhccccCCH
Confidence 45788888888888899999999998752 4689999999999999999997 8884 69999998762 34689
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCc
Q 001075 737 SVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1163)
Q Consensus 737 ~flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~ 771 (1163)
+|+|+||++||.||+.|++||.++.+++|..||..
T Consensus 81 ~fie~Rr~~Le~FL~ri~~hp~L~~s~~~~~FL~~ 115 (116)
T cd07284 81 DFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTA 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccccChHHHHhhcC
Confidence 99999999999999999999999999999999974
No 49
>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma
Probab=99.72 E-value=2.1e-17 Score=162.32 Aligned_cols=100 Identities=20% Similarity=0.317 Sum_probs=86.1
Q ss_pred EEEeceEEEcCCCcceEEEEEEEEecC--C----ceEEEEeccchHHHHHHHHHh-ccc------cCCCCCCccccCCCC
Q 001075 668 CEVLGANIVKSDSRTFAVYAIAVTDSN--N----NSWSIKRRFRHFEELHRRLKF-FQE------YNLHLPPKHFLSTGL 734 (1163)
Q Consensus 668 ~~I~~~~~~~~g~k~y~vY~I~V~~~~--~----~~W~V~RRYSdF~~Lh~~L~~-~~~------~~p~LP~Kk~f~~n~ 734 (1163)
+.|.++...++| |++|.|++.... . ..|+|.||||||.+||++|+. |++ ..|++|+|++| +++
T Consensus 5 ~~V~dp~~~~~g---yt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~p~k~~~-g~~ 80 (118)
T cd07287 5 YTVTDPRRHPKG---YTVYKVTARIVSRKNPEDVQEIVVWKRYSDFKKLHKDLWQIHKNLCRQSELFPPFAKAKVF-GRF 80 (118)
T ss_pred EEecCCeEcCCC---eEEEEEEEEecCCCCcccceeEEEeCCchHHHHHHHHHHHhccccccCCcccCCCCCceee-cCC
Confidence 456777766543 999999887542 1 579999999999999999996 653 25889999999 899
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCc
Q 001075 735 DVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1163)
Q Consensus 735 ~~~flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~ 771 (1163)
+++|||+||.+||.||+.|.++|.++++++|.+||.-
T Consensus 81 d~~fIe~RR~~Le~fL~~i~~~p~l~~s~~~~~Fl~~ 117 (118)
T cd07287 81 DESVIEERRQCAEDLLQFSANIPALYNSSQLEDFFKG 117 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCccccCChHHHHHhcC
Confidence 9999999999999999999999999999999999964
No 50
>cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a
Probab=99.70 E-value=6.3e-17 Score=157.33 Aligned_cols=104 Identities=24% Similarity=0.316 Sum_probs=91.5
Q ss_pred EEEEeceEEEcCCCcceEEEEEEEEecCC-ceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCCCHHHHHHHH
Q 001075 667 RCEVLGANIVKSDSRTFAVYAIAVTDSNN-NSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQERC 743 (1163)
Q Consensus 667 ~~~I~~~~~~~~g~k~y~vY~I~V~~~~~-~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~~~~flEkRr 743 (1163)
+++|.|++.... .++|++|.|+|++.++ ..|.|+|||+||.+||++|++ ||. ..|+||+|.+++++.++++.|+|+
T Consensus 3 ~v~v~~~~kr~~-~~~~yvY~I~V~~~~~~~~~~V~RrYseF~~Lh~~L~~~FP~~~lp~LP~k~~~~~~~~~~v~e~R~ 81 (111)
T cd06884 3 RVTVVGFQKRYD-PEKYYVYVVEVTRENQASPQHVFRTYKEFLELYQKLCRKFPLAKLHPLSTGSHVGRSNIKSVAEKRK 81 (111)
T ss_pred EEEEEEEEEEec-CCCeEEEEEEEEEcCCCceEEEEeEHHHHHHHHHHHHHHCCCCCCCCCCCceeecCCcchHHHHHHH
Confidence 577888876544 6789999999987654 789999999999999999997 997 457899999886677899999999
Q ss_pred HHHHHHHHHHhcC-CCcCCChhhhcccCc
Q 001075 744 KLLDRYLKMLLQL-PTVSGSIEVWDFLSV 771 (1163)
Q Consensus 744 ~~Le~YLq~Ll~~-p~l~~s~~v~~FL~~ 771 (1163)
.+||.||+.|++. |.+++|+.|+.||.+
T Consensus 82 ~~L~~Yl~~Ll~~~~~is~~~~v~~FF~p 110 (111)
T cd06884 82 QDIQQFLNSLFKMAEEVSHSDLVYTFFHP 110 (111)
T ss_pred HHHHHHHHHHHcCCHHHhcChHHHHhcCc
Confidence 9999999999996 789999999999974
No 51
>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of t
Probab=99.70 E-value=6.3e-17 Score=159.11 Aligned_cols=100 Identities=15% Similarity=0.293 Sum_probs=86.6
Q ss_pred EEEeceEEEcCCCcceEEEEEEEEecC------CceEEEEeccchHHHHHHHHHh-ccc------cCCCCCCccccCCCC
Q 001075 668 CEVLGANIVKSDSRTFAVYAIAVTDSN------NNSWSIKRRFRHFEELHRRLKF-FQE------YNLHLPPKHFLSTGL 734 (1163)
Q Consensus 668 ~~I~~~~~~~~g~k~y~vY~I~V~~~~------~~~W~V~RRYSdF~~Lh~~L~~-~~~------~~p~LP~Kk~f~~n~ 734 (1163)
+.|.+++.+++| |++|.|.+.... ...|+|.||||||..||++|.. +++ ..|++|+|+++ +++
T Consensus 5 ~~V~dp~~~~~g---yt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~P~K~~~-g~f 80 (118)
T cd07288 5 YSVTDPRTHPKG---YTEYKVTAQFISKKQPEDVKEVVVWKRYSDLKKLHGELAYTHRNLFRRQEEFPPFPRAQVF-GRF 80 (118)
T ss_pred EEecCCcCcCCC---cEEEEEEEEecCCCCCccceEEEEECCchHHHHHHHHHHHhcccccccCCccCCCCCceee-ccC
Confidence 567777766654 999999976431 3589999999999999999995 433 26899999999 899
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCc
Q 001075 735 DVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1163)
Q Consensus 735 ~~~flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~ 771 (1163)
+++|||+||.+||+||+.|.++|.++++++|.+||+-
T Consensus 81 ~~~fIeeRR~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 117 (118)
T cd07288 81 EAAVIEERRNAAEAMLLFTVNIPALYNSPQLKEFFRD 117 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHhCChhhcCChHHHHHHhc
Confidence 9999999999999999999999999999999999974
No 52
>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.69 E-value=6.9e-17 Score=161.00 Aligned_cols=90 Identities=28% Similarity=0.394 Sum_probs=82.2
Q ss_pred ceEEEEEEEEecC----CceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHhc
Q 001075 682 TFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQ 755 (1163)
Q Consensus 682 ~y~vY~I~V~~~~----~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~~~~flEkRr~~Le~YLq~Ll~ 755 (1163)
.-++|.|+|.... ...|.|.||||||..||++|++ |+. ..|++|+|+++ ++++++|+|+||.+||.||+.|++
T Consensus 43 ~~~~y~VqV~v~~~~~~~~~w~V~RRYSDF~~L~~~L~~~~p~~~lPplPpK~~l-~~~~~~fiEeRR~gLE~fLq~Ll~ 121 (138)
T cd06879 43 VDKFYRVQVGVQSPEGITTMRGVLRRFNDFLKLHTDLKKLFPKKKLPAAPPKGLL-RMKNRALLEERRHSLEEWMGKLLS 121 (138)
T ss_pred ceEEEEEEEeecCCCCcceeeeeecCchHHHHHHHHHHHHCCCCcCCCCCCcccc-cCCCHHHHHHHHHHHHHHHHHHHc
Confidence 4578999999883 2489999999999999999997 877 57889999999 899999999999999999999999
Q ss_pred CCCcCCChhhhcccCcC
Q 001075 756 LPTVSGSIEVWDFLSVD 772 (1163)
Q Consensus 756 ~p~l~~s~~v~~FL~~~ 772 (1163)
+|.+++++.|.+||+++
T Consensus 122 ~p~l~~s~~v~~FLele 138 (138)
T cd06879 122 DIDLSRSVPVASFLELE 138 (138)
T ss_pred CccccCCHHHHHHhCCC
Confidence 99999999999999864
No 53
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr
Probab=99.69 E-value=1.2e-16 Score=161.13 Aligned_cols=105 Identities=27% Similarity=0.496 Sum_probs=89.1
Q ss_pred eEEEEEeceEEEcCC--CcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHhc-ccc---------------------
Q 001075 665 KLRCEVLGANIVKSD--SRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKFF-QEY--------------------- 720 (1163)
Q Consensus 665 ~l~~~I~~~~~~~~g--~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~~-~~~--------------------- 720 (1163)
.++|+|++++..+.+ ...|++|+|+|+.+ +.+|+|+|||+||.+||++|+.+ +..
T Consensus 3 ~i~a~I~~~er~~~~~~~~~~~~Y~Iev~~g-~~~W~V~RRy~~F~~Lh~~L~~~~~~l~~p~p~k~~~~~~~~~~~~~~ 81 (140)
T cd06895 3 PIKARITDVERSGTTRHLLNPNLYTIELQHG-QFTWTIKRRYKHFQELHQALKLYRALLRIPLPTRRHKEERLSLKRSRK 81 (140)
T ss_pred CcEEEEeEEeccCCCCCCCceEEEEEEEEEC-CEEEEEEeeHHHHHHHHHHHHHhcccccccCchHHhhhhhhccccccc
Confidence 478999999776653 57799999999998 89999999999999999999984 322
Q ss_pred ---------CCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCcC
Q 001075 721 ---------NLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1163)
Q Consensus 721 ---------~p~LP~Kk~f~~n~~~~flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~ 772 (1163)
.|.||.|... + ..++++++|+++||.||+.|+++|.++++.++++||+.+
T Consensus 82 ~~~~~~~~~lP~lP~~~~~-~-~~~~~ie~Rr~~Le~YL~~LL~~~~~rn~~~~~~FLeVS 140 (140)
T cd06895 82 PEREKKNRRLPSLPALPDI-L-VSEEQLDSRKKQLENYLQNLLKIPDYRNHPETLEFLEVS 140 (140)
T ss_pred cccccccccCCCCCCcccc-c-cCHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHhhhccC
Confidence 3455555544 2 389999999999999999999999999999999999864
No 54
>cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Five SH (FISH), also called Tks5, is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. FISH contains an N-terminal PX domain and five Src homology 3 (SH3) domains. FISH binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. This subfamily also includes proteins with a different number of SH3 domains than FISH, such as Tks4, which contains
Probab=99.68 E-value=2.1e-16 Score=155.36 Aligned_cols=104 Identities=31% Similarity=0.366 Sum_probs=89.9
Q ss_pred EEEEeceEEEcCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccc----------cCCCCCCccccCCCCC
Q 001075 667 RCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE----------YNLHLPPKHFLSTGLD 735 (1163)
Q Consensus 667 ~~~I~~~~~~~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~----------~~p~LP~Kk~f~~n~~ 735 (1163)
.|.|.+++.....+ .|.+|.|+|+..++..|.|+|||+||++||++|++ ||. ..|.||+|++|+++..
T Consensus 3 ~~~v~~~ekr~~~~-k~y~Y~i~V~~~dg~~~~v~RrYs~F~~Lh~~L~~~FP~eag~~~~~~r~lP~lP~k~~~g~s~~ 81 (119)
T cd06888 3 DVKVIDVEKRRAPS-KHYVYIINVTWSDGSSNVIYRRYSKFFDLQMQLLDKFPIEGGQKDPSQRIIPFLPGKILFRRSHI 81 (119)
T ss_pred eEEEEEEEEEecCC-CcEEEEEEEEEcCCCEEEEEEeHHHHHHHHHHHHHhCchhhccCCCCccccCCCCCCcccCcchh
Confidence 57788888776544 45599999999988899999999999999999997 886 2688999999943455
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC-CcCCChhhhcccCc
Q 001075 736 VSVIQERCKLLDRYLKMLLQLP-TVSGSIEVWDFLSV 771 (1163)
Q Consensus 736 ~~flEkRr~~Le~YLq~Ll~~p-~l~~s~~v~~FL~~ 771 (1163)
.+++|+|+..|+.||+.|+..| .+.+|+.|+.|+.+
T Consensus 82 ~~~~e~R~~~L~~Yl~~Ll~lp~~Is~~~~v~~FF~p 118 (119)
T cd06888 82 RDVAVKRLKPIDEYCKALVRLPPHISQCDEVLRFFEA 118 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceeecCHHHHHhcCC
Confidence 7799999999999999999985 68899999999986
No 55
>cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.67 E-value=2.4e-16 Score=155.20 Aligned_cols=86 Identities=28% Similarity=0.368 Sum_probs=78.4
Q ss_pred CCcceEEEEEEEEecCC--ceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHh
Q 001075 679 DSRTFAVYAIAVTDSNN--NSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLL 754 (1163)
Q Consensus 679 g~k~y~vY~I~V~~~~~--~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~~~~flEkRr~~Le~YLq~Ll 754 (1163)
+++.|++|.|+|+..++ ..|.|.||||||++||++|++ ||. ..|+||+|+. .++|+||.+|+.||+.|+
T Consensus 29 ~~~~~~~Y~I~V~~~~~~~~~~~V~RRYsdF~~L~~~L~~~fp~~~lP~lP~K~~-------~~~E~Rr~~Le~yL~~Ll 101 (119)
T cd06869 29 RSKHHYEFIIRVRREGEEYRTIYVARRYSDFKKLHHDLKKEFPGKKLPKLPHKDK-------LPREKLRLSLRQYLRSLL 101 (119)
T ss_pred CCCceEEEEEEEEECCCCCCceEEEeeHHHHHHHHHHHHHHCcCCCCCCCcCCch-------hHHHHHHHHHHHHHHHHh
Confidence 46779999999999865 599999999999999999997 987 5689999986 478999999999999999
Q ss_pred cCCCcCCChhhhcccCc
Q 001075 755 QLPTVSGSIEVWDFLSV 771 (1163)
Q Consensus 755 ~~p~l~~s~~v~~FL~~ 771 (1163)
.+|.+++|++|.+||..
T Consensus 102 ~~p~l~~s~~~~~FL~~ 118 (119)
T cd06869 102 KDPEVAHSSILQEFLTS 118 (119)
T ss_pred cChhhhcChHHHHhhCC
Confidence 99999999999999974
No 56
>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.
Probab=99.65 E-value=7.6e-16 Score=146.51 Aligned_cols=103 Identities=37% Similarity=0.640 Sum_probs=93.5
Q ss_pred EEEeceEEEcCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCCCHHHHHHHHHH
Q 001075 668 CEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQERCKL 745 (1163)
Q Consensus 668 ~~I~~~~~~~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~~~~flEkRr~~ 745 (1163)
+.|.++....++++.+++|.|.|+..+...|.|.|||+||.+||+.|.+ ++. ..|+||+|.++ ++.+.+++++|+.+
T Consensus 2 i~I~~~~~~~~~~~~~~~Y~i~v~~~~~~~~~v~rrysdF~~L~~~L~~~~~~~~~p~lP~k~~~-~~~~~~~~~~R~~~ 80 (106)
T cd06093 2 VSIPDYEKVKDGGKKYVVYIIEVTTQGGEEWTVYRRYSDFEELHEKLKKKFPGVILPPLPPKKLF-GNLDPEFIEERRKQ 80 (106)
T ss_pred EEeCCceEEcCCCCCEEEEEEEEEECCCCeEEEEeehHHHHHHHHHHHHHCCCCccCCCCCCccc-ccCCHHHHHHHHHH
Confidence 6788888776677889999999999844899999999999999999997 775 57999999999 77899999999999
Q ss_pred HHHHHHHHhcCCCcCCChhhhcccCc
Q 001075 746 LDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1163)
Q Consensus 746 Le~YLq~Ll~~p~l~~s~~v~~FL~~ 771 (1163)
|+.||+.|+.+|.+.+++.+.+||+.
T Consensus 81 L~~yl~~l~~~~~~~~~~~~~~Fl~~ 106 (106)
T cd06093 81 LEQYLQSLLNHPELRNSEELKEFLEL 106 (106)
T ss_pred HHHHHHHHhcCcccccChHHHHHhCC
Confidence 99999999999999999999999863
No 57
>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=99.65 E-value=6.6e-16 Score=148.80 Aligned_cols=102 Identities=22% Similarity=0.316 Sum_probs=86.5
Q ss_pred EEEeceEEEcCCCcceEEEEEEEEecCCc--eEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCCCHHHHHHHH
Q 001075 668 CEVLGANIVKSDSRTFAVYAIAVTDSNNN--SWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQERC 743 (1163)
Q Consensus 668 ~~I~~~~~~~~g~k~y~vY~I~V~~~~~~--~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~~~~flEkRr 743 (1163)
|+|.+++......| |.+|.|+|++.++. .| |+|||+||++||++|++ ||. ..|.||+|.+++++...+..|+|+
T Consensus 2 ~~V~~f~Kr~~p~k-~yvY~i~V~~~~~~~~~~-I~Rry~eF~~Lh~kL~~~Fp~~~lP~lP~k~~~grs~~~~vae~R~ 79 (109)
T cd07289 2 VSVFTYHKRYNPDK-HYIYVVRILREGQIEPSF-VFRTFDEFQELHNKLSILFPLWKLPGFPNKMVLGRTHIKDVAAKRK 79 (109)
T ss_pred cEEeeEEEEEcCCC-eEEEEEEEEECCCceeEE-EEeeHHHHHHHHHHHHHHCCcccCCCCCCCeeeCCCcchHHHHHHH
Confidence 67888876554334 45999999998553 55 99999999999999998 987 579999999994455589999999
Q ss_pred HHHHHHHHHHhcC-CCcCCChhhhcccCc
Q 001075 744 KLLDRYLKMLLQL-PTVSGSIEVWDFLSV 771 (1163)
Q Consensus 744 ~~Le~YLq~Ll~~-p~l~~s~~v~~FL~~ 771 (1163)
.+|+.||+.|++. |.+++|+.++.||.+
T Consensus 80 ~~L~~Yl~~Ll~~p~~Is~~d~v~~FF~p 108 (109)
T cd07289 80 VELNSYIQSLMNSSTEVAECDLVYTFFHP 108 (109)
T ss_pred HHHHHHHHHHHcCChhhhcChHHHHhccc
Confidence 9999999999997 579999999999974
No 58
>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will
Probab=99.65 E-value=6.5e-16 Score=153.34 Aligned_cols=107 Identities=29% Similarity=0.604 Sum_probs=88.1
Q ss_pred eEEEEEeceEEEcCC----CcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHhcccc-CCCCCCccc----------
Q 001075 665 KLRCEVLGANIVKSD----SRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKFFQEY-NLHLPPKHF---------- 729 (1163)
Q Consensus 665 ~l~~~I~~~~~~~~g----~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~~~~~-~p~LP~Kk~---------- 729 (1163)
.++|+|.+++-...+ .-.|++|.|+|+.+ ..+|+|.|||+||.+||++|..+... .++||+|.+
T Consensus 3 ~i~~~i~~~eR~~~~~~~~~~~~t~Y~I~v~~g-~~~w~V~rRy~~F~~Lh~~L~~~~~~~~~plP~k~~~~~r~~~~~~ 81 (135)
T cd07296 3 PIKARVLEVERFTSTSDVKKPSLNVYTIELTHG-EFTWQVKRKFKHFQELHRELLRYKAFIRIPIPTRSHTVRRQTIKRG 81 (135)
T ss_pred ceEEEEEEEEEeeccccccccceEEEEEEEEeC-CEEEEEEeehHHHHHHHHHHHhcCCCCCCCCCcccchhhccccccc
Confidence 689999999864433 45699999999998 88999999999999999999986654 457899887
Q ss_pred -------cCCCCCHHHHH----HHHHHHHHHHHHHhcCCCcCCChhhhcccCcC
Q 001075 730 -------LSTGLDVSVIQ----ERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1163)
Q Consensus 730 -------f~~n~~~~flE----kRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~ 772 (1163)
|....+....| +||++||+||+.|+++|.+++++++++||+.+
T Consensus 82 ~~~~~p~lp~~~~~~v~e~~~~sRr~~LE~YL~~LL~~~~~Rn~~a~~eFLeVs 135 (135)
T cd07296 82 EPRHMPSLPRGAEEEAREEQFSSRRKQLEDYLSKLLKMPMYRNYHATMEFIDVS 135 (135)
T ss_pred cccccccCCCCCCccccccchHHHHHHHHHHHHHHhcChhhcCCHHHHhheecC
Confidence 42222223444 89999999999999999999999999999864
No 59
>cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p47phox is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal PX domain, two Src Homology 3 (SH3) domains, and a C-terminal domain that contains PxxP motifs for binding SH3 domains. The PX domain of p47phox is unique in that it contains two distinct basic pockets on the membrane-binding surface: one
Probab=99.63 E-value=1.6e-15 Score=148.78 Aligned_cols=103 Identities=28% Similarity=0.381 Sum_probs=89.6
Q ss_pred EEEEeceEEEcCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccc----------cCCCCCCccccCCCCC
Q 001075 667 RCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE----------YNLHLPPKHFLSTGLD 735 (1163)
Q Consensus 667 ~~~I~~~~~~~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~----------~~p~LP~Kk~f~~n~~ 735 (1163)
.+.|.|++.... .+.|++|.|+|...++.+|.|+|||+||.+||.+|++ ||. ..|.||+|.++ ++.
T Consensus 3 ~~~~~~~~kr~~-~~~~y~Y~i~v~~s~~~~~~v~RrYsdF~~L~~~L~~~fp~Eag~~~~~~r~lP~lP~k~~~-~~~- 79 (118)
T cd06887 3 HIALLGFEKRFV-PSQHYVYMFLVKWQDLSEKLVYRRFTEIYEFHKTLKEMFPIEAGDINKENRIIPHLPAPKWF-DGQ- 79 (118)
T ss_pred eEEEEEEEEeec-CCCcEEEEEEEEEcCCcEEEEEeeHHHHHHHHHHHHHhCCccccccCCCCCcCCCCCCCccc-Ccc-
Confidence 567788877664 4569999999999778899999999999999999997 884 25899999999 553
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-CCcCCChhhhcccCcCc
Q 001075 736 VSVIQERCKLLDRYLKMLLQL-PTVSGSIEVWDFLSVDS 773 (1163)
Q Consensus 736 ~~flEkRr~~Le~YLq~Ll~~-p~l~~s~~v~~FL~~~~ 773 (1163)
++.|+|+.+|+.||+.|+.. +.+.+|+.++.||.+.+
T Consensus 80 -~v~e~Rr~~L~~Yl~~Ll~lp~~i~~s~~v~~Ff~~~~ 117 (118)
T cd06887 80 -RAAENRQGTLTEYCSTLLSLPPKISRCPHVLDFFKVRP 117 (118)
T ss_pred -hHHHHHHHHHHHHHHHHHhCCchhhCCHHHHHHhCcCC
Confidence 99999999999999999875 58999999999998764
No 60
>smart00312 PX PhoX homologous domain, present in p47phox and p40phox. Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.
Probab=99.63 E-value=7.9e-16 Score=147.29 Aligned_cols=91 Identities=32% Similarity=0.567 Sum_probs=78.1
Q ss_pred CcceEEEEEEEEecC-CceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccC--CCCCHHHHHHHHHHHHHHHHHHh
Q 001075 680 SRTFAVYAIAVTDSN-NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLS--TGLDVSVIQERCKLLDRYLKMLL 754 (1163)
Q Consensus 680 ~k~y~vY~I~V~~~~-~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~--~n~~~~flEkRr~~Le~YLq~Ll 754 (1163)
++.+++|.|.|+... ...|.|.||||||.+||++|.+ ++. ..|+||+|++++ ++.+++++++|+.+||.||+.|+
T Consensus 9 ~~~~~~~~~~v~~~~~~~~~~v~RRysdF~~L~~~L~~~~~~~~lP~lP~k~~~~~~~~~~~~~i~~R~~~L~~yL~~l~ 88 (105)
T smart00312 9 DGKHYYYVIEIETKTGLEEWTVSRRYSDFLELHSKLKKHFPRRILPPLPPKKLFGRLNNFSEEFIEKRRRGLERYLQSLL 88 (105)
T ss_pred CCceEEEEEEEEECCCCceEEEEEEHHHHHHHHHHHHHHCcCCCCCCCCCchhcccCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 344566666666553 4799999999999999999997 776 568999999983 26899999999999999999999
Q ss_pred cCCCcCC-ChhhhcccC
Q 001075 755 QLPTVSG-SIEVWDFLS 770 (1163)
Q Consensus 755 ~~p~l~~-s~~v~~FL~ 770 (1163)
++|.+++ |++|.+||+
T Consensus 89 ~~~~~~~~s~~~~~Fl~ 105 (105)
T smart00312 89 NHPELINESEVVLSFLE 105 (105)
T ss_pred cCHhhhccChHHHHhcC
Confidence 9999999 999999985
No 61
>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p
Probab=99.60 E-value=4.7e-15 Score=144.86 Aligned_cols=99 Identities=24% Similarity=0.244 Sum_probs=87.1
Q ss_pred EEEEeceEEEcCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-cccc---------CCCCCCccccCCCCCH
Q 001075 667 RCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEY---------NLHLPPKHFLSTGLDV 736 (1163)
Q Consensus 667 ~~~I~~~~~~~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~~---------~p~LP~Kk~f~~n~~~ 736 (1163)
.|+|.++...++ +.+|.|+|+..++..|.|+|||+||.+||.+|.+ ||.. .|.||+|... +.+.
T Consensus 2 ~~~V~~~~~~~~----~y~Y~i~v~~s~~~~~~v~RrY~dFy~Lh~~L~~~fp~eag~~~~~~~lP~lP~~~~~--~~~~ 75 (112)
T cd06890 2 SASVESVLLEDN----RYWYRVRATLSDGKTRYLCRYYQDFYKLHIALLDLFPAEAGRNSSKRILPYLPGPVTD--VVND 75 (112)
T ss_pred eEEEEEEEEECC----EEEEEEEEEEcCCcEEEEEEEHHHHHHHHHHHHHhCcHhhCCCCCCCcCCCCCCCccC--cchh
Confidence 588998877744 7899999999889999999999999999999997 8842 4677776654 4789
Q ss_pred HHHHHHHHHHHHHHHHHhcCC-CcCCChhhhcccCc
Q 001075 737 SVIQERCKLLDRYLKMLLQLP-TVSGSIEVWDFLSV 771 (1163)
Q Consensus 737 ~flEkRr~~Le~YLq~Ll~~p-~l~~s~~v~~FL~~ 771 (1163)
+++++|+.+|+.||+.|+.+| .+.+|+.|++||.+
T Consensus 76 ~~~e~R~~~L~~Yl~~Ll~~p~~i~~s~~v~~Ff~~ 111 (112)
T cd06890 76 SISLKRLNDLNEYLNELINLPAYIQTSEVVRDFFAN 111 (112)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHhccCHHHHHHcCc
Confidence 999999999999999999999 99999999999975
No 62
>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ]. PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A ....
Probab=99.60 E-value=3e-15 Score=144.07 Aligned_cols=106 Identities=31% Similarity=0.552 Sum_probs=88.6
Q ss_pred eEEEEEeceEEEcCCCcceEEEEEEEEecC-CceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCC--CCCHHHH
Q 001075 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSN-NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLST--GLDVSVI 739 (1163)
Q Consensus 665 ~l~~~I~~~~~~~~g~k~y~vY~I~V~~~~-~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~--n~~~~fl 739 (1163)
-+.|+|.+.....+ +..++|.|.|.... ...|.|.|||+||.+||++|++ ++. ..|+||+|.++.. +.+.+++
T Consensus 3 ~~~v~v~~~~~~~~--~~~~~~~~~i~~~~~~~~~~v~rry~dF~~L~~~L~~~~~~~~~p~~P~~~~~~~~~~~~~~~~ 80 (113)
T PF00787_consen 3 IIQVSVVDPETSGN--KKKTYYIYQIELQDGKESWSVYRRYSDFYELHRKLKKRFPSRKLPPFPPKQWFSNSRNLDPEFI 80 (113)
T ss_dssp EEEEEEEEEEEESS--SSEEEEEEEEEETTSSSEEEEEEEHHHHHHHHHHHHHHHTTSGSTSSSTSSSSSSSSTTSHHHH
T ss_pred EEEEEEcCCEEEcC--CCEEEEEEEEEECCCCEEEEEEEEHHHHHHHHHHHhhhhcccccccCCccccccccccccHHHH
Confidence 36788888777643 44566666666664 4799999999999999999997 775 5699999999832 4899999
Q ss_pred HHHHHHHHHHHHHHhcCCCcCCChhhhcccCcC
Q 001075 740 QERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1163)
Q Consensus 740 EkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~ 772 (1163)
++|+..|+.||+.|+++|.+..++.|..||+.+
T Consensus 81 ~~R~~~L~~yL~~l~~~~~~~~s~~l~~FL~~~ 113 (113)
T PF00787_consen 81 EERRQALEKYLQSLLSHPELRSSEALKEFLESS 113 (113)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHSHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHcChhhhCchHHHHhcCCC
Confidence 999999999999999999999999999999863
No 63
>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai
Probab=99.59 E-value=8e-15 Score=141.47 Aligned_cols=100 Identities=21% Similarity=0.392 Sum_probs=83.6
Q ss_pred EeceEEEcCCCcceEEEEEEEEecCC-ceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCCC-HHHHHHHHHH
Q 001075 670 VLGANIVKSDSRTFAVYAIAVTDSNN-NSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLD-VSVIQERCKL 745 (1163)
Q Consensus 670 I~~~~~~~~g~k~y~vY~I~V~~~~~-~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~~-~~flEkRr~~ 745 (1163)
+.+++..-...|.| +|.|+|+..++ ..|.|+|||+||.+||++|++ ||. ..|.||+|.++ +..+ ++.+|+|+.+
T Consensus 4 ~~~~~kr~~p~k~y-~Y~I~V~~~~~~~~~~I~RrY~eF~~Lh~kLk~~FP~~~lP~LP~k~~~-g~s~~~~vae~R~~~ 81 (109)
T cd07290 4 LCRHESTFNPSKGY-AYVVKVQREGHKEATFVQRTFEEFQELHNKLRLLFPSSKLPSFPSRFVI-GRSRGEAVAERRKEE 81 (109)
T ss_pred EeeeeEEecCCCcE-EEEEEEEECCCceeEEEEeeHHHHHHHHHHHHHHCccccCCCCCCCccc-CccccHHHHHHHHHH
Confidence 45566555444545 59999999853 459999999999999999997 997 47999999999 5544 7999999999
Q ss_pred HHHHHHHHhcC-CCcCCChhhhcccCc
Q 001075 746 LDRYLKMLLQL-PTVSGSIEVWDFLSV 771 (1163)
Q Consensus 746 Le~YLq~Ll~~-p~l~~s~~v~~FL~~ 771 (1163)
|+.||+.|+.. |.|++|+.|+.||.+
T Consensus 82 L~~Yl~~Ll~~~~~Is~s~~v~~FF~p 108 (109)
T cd07290 82 LNGYIWHLIHAPPEVAECDLVYTFFHP 108 (109)
T ss_pred HHHHHHHHHcCChheecCHHHHHhccc
Confidence 99999998875 789999999999974
No 64
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=99.48 E-value=1.5e-13 Score=137.95 Aligned_cols=106 Identities=19% Similarity=0.225 Sum_probs=91.4
Q ss_pred ceeEEEEEeceEEEcCCCcceEEEEEEEEecC----CceE-EEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCCC
Q 001075 663 FFKLRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSW-SIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLD 735 (1163)
Q Consensus 663 ~~~l~~~I~~~~~~~~g~k~y~vY~I~V~~~~----~~~W-~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~~ 735 (1163)
...+.+.|++.+.+++ .|++|.+.++++- ...+ .|.||||||.+||++|.. ++. ..|++|+|.+.-+..+
T Consensus 27 ~~~l~i~Vtd~ek~G~---~~~~~~~~~~Tnlp~Fr~~~~~~VrRRysdF~~L~~~L~~~~~~~iVPplP~k~~~~~~~~ 103 (140)
T cd06891 27 KYFLRVRVTGIERNKS---KDPIIRFDVTTNLPTFRSSTYKDVRRTYEEFQKLFKYLNGANPETFVPALPLPSTSYGSNN 103 (140)
T ss_pred CceEEEEEeCceecCC---CCeEEEEEEeeCCcccCCCCCCceeeeHHHHHHHHHHHHHHCCCcEeCCCCCccccCCCCC
Confidence 4578999999988665 5899999987552 3456 699999999999999996 777 5699999996437788
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCc
Q 001075 736 VSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSV 771 (1163)
Q Consensus 736 ~~flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~ 771 (1163)
.+|+++||.+||.||+.|+.||.+..+++|..||+.
T Consensus 104 ~E~~~~rr~~LqrfL~RV~~hP~L~~d~~l~~FLEs 139 (140)
T cd06891 104 EEDARKLKANLQRWFNRVCSDPILIRDEELRFFIES 139 (140)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhccCHHHHHHhcc
Confidence 999999999999999999999999999999999974
No 65
>KOG2527 consensus Sorting nexin SNX11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=4.7e-14 Score=136.96 Aligned_cols=107 Identities=21% Similarity=0.320 Sum_probs=91.1
Q ss_pred eEEEEEeceEEEcCCCcceEEEEEEEEecC----CceEEEEeccchHHHHHHHHHhcc-c-cCCCCCCccccCCCC-CHH
Q 001075 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKFFQ-E-YNLHLPPKHFLSTGL-DVS 737 (1163)
Q Consensus 665 ~l~~~I~~~~~~~~g~k~y~vY~I~V~~~~----~~~W~V~RRYSdF~~Lh~~L~~~~-~-~~p~LP~Kk~f~~n~-~~~ 737 (1163)
-+.+.|.+..+..+|...||-|.|.+.++. ...-.|.||||||++||..|..-. . -.|+||+|.++ .++ ..+
T Consensus 17 fLeI~V~nPrt~~~~~~~ytdYEI~~rTN~p~F~~k~S~VRRRYsdFewlr~~Ler~s~kvvvP~LPgK~~~-~~~~fre 95 (144)
T KOG2527|consen 17 FLEIDVINPRTHGDGKNRYTDYEIRCRTNSPSFKKKESCVRRRYSDFEWLRKRLERESGKVVVPELPGKALF-RQLPFRE 95 (144)
T ss_pred eEEEEeeCCcccccccccceeEEEEEecCchhhhhhhHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHH-hcCchHH
Confidence 578889998887777789999999998873 355679999999999999999633 2 46999999998 443 349
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCcC
Q 001075 738 VIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1163)
Q Consensus 738 flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~ 772 (1163)
|||+||++|+.||+.++.+|.+.+...+.-||.-.
T Consensus 96 ~IEeRrqgLe~fl~kVaghpL~q~~~~Lh~Flq~~ 130 (144)
T KOG2527|consen 96 FIEERRQGLEVFLRKVAGHPLLQNERCLHLFLQSE 130 (144)
T ss_pred HHHHHHHHHHHHHHHHhCchhhhccHHHHHHHHhh
Confidence 99999999999999999999999888888888755
No 66
>cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD2 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It mediates EGF-dependent insulin secretion and EGF-induced Ras activation by the guanine nucleotide-exchange factor
Probab=99.41 E-value=8.9e-13 Score=128.42 Aligned_cols=106 Identities=25% Similarity=0.403 Sum_probs=86.3
Q ss_pred eEEEEEeceEEEcCCCcce--EEEEEEEEecCCceEEEEeccchHHHHHHHHHhccc--cCCCCCCccc-----cC----
Q 001075 665 KLRCEVLGANIVKSDSRTF--AVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKFFQE--YNLHLPPKHF-----LS---- 731 (1163)
Q Consensus 665 ~l~~~I~~~~~~~~g~k~y--~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~~~~--~~p~LP~Kk~-----f~---- 731 (1163)
.|+|+|.+++..+.|.+.+ ++|+|+++.+ ..+|+|.|||++|.+||+.|..|.. ..+|+|.... ..
T Consensus 3 pi~~~V~~~er~~s~s~~~~~~lYtIeltHG-~F~W~IkRryKhF~~LHr~L~~~k~~~~~~P~~~~~~~r~~~~~~~~~ 81 (130)
T cd07297 3 PVTAKVENTERYTTGSKVHVCTLYTVRLTHG-EFTWTVKKKFKHFQELHRDLYRHKVMLSFLPLGRFAIQHRQQLEGLTE 81 (130)
T ss_pred ceEEEEEEEEEeecccccccceeEEEEEecC-ceEEEEEehhhhHHHHHHHHHHHHHhhhcCCchhhhhhhccccccccC
Confidence 6899999999988888877 8999999999 7999999999999999999997554 2344442111 00
Q ss_pred ---------CCCCHHHHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCcC
Q 001075 732 ---------TGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1163)
Q Consensus 732 ---------~n~~~~flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~ 772 (1163)
+.. .+-+..|+++||.||+.||.+|..++.++..+||+.+
T Consensus 82 ~mP~LP~~~~~~-~~~~~sr~kqLE~YLn~LL~~~~YRn~~atleFLeVS 130 (130)
T cd07297 82 EMPSLPGTDREA-SRRTASKPKYLENYLNNLLENSFYRNYHAMMEFLAVS 130 (130)
T ss_pred cCCCCCCCCchh-hhhhhhHHHHHHHHHHHHhcchhhcCChhheeeeecC
Confidence 111 3457789999999999999999999999999999864
No 67
>cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1, a homolog of the p47phox subunit of phagocytic NADPH oxidase, is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain
Probab=99.33 E-value=7.1e-12 Score=123.01 Aligned_cols=99 Identities=30% Similarity=0.394 Sum_probs=82.4
Q ss_pred EeceEEEcCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccc----------cCCCCCCccccCCCC--CH
Q 001075 670 VLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE----------YNLHLPPKHFLSTGL--DV 736 (1163)
Q Consensus 670 I~~~~~~~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~----------~~p~LP~Kk~f~~n~--~~ 736 (1163)
|...++++ ...+.+|.|.|+..++..|.|+|||+||.+||.+|++ ||. ..|.||+|.++ ++. ..
T Consensus 8 v~~~g~~k--~~~h~~Y~i~V~wsdgs~~~iyR~y~eF~~lh~~L~~~FP~EaG~~~~~~riLP~lP~~~~~-~~~~~~~ 84 (121)
T cd06889 8 VQGVGVMQ--KRRHKTYMFSVLWSDGSELFVYRSLEEFRKLHKQLKEKFPVEAGLLRSSDRVLPKFKDAPSL-GSLKGST 84 (121)
T ss_pred EEEEeeec--ccceeEEEEEEEEcCCcEEEEEEEHHHHHHHHHHHHHHCCcccCCCCCCCcccCCCCCCccc-CCccccc
Confidence 33444444 2345699999999999999999999999999999997 884 16899999999 654 34
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CCcCCChhhhcccCc
Q 001075 737 SVIQERCKLLDRYLKMLLQL-PTVSGSIEVWDFLSV 771 (1163)
Q Consensus 737 ~flEkRr~~Le~YLq~Ll~~-p~l~~s~~v~~FL~~ 771 (1163)
+--++|+..|+.|++.|++. |.|.+|+.|+.||.+
T Consensus 85 ~~a~~R~~~L~~Y~~~Ll~lp~~Is~~~~V~~FF~p 120 (121)
T cd06889 85 SRSLARLKLLETYCQELLRLDEKVSRSPEVIQFFAP 120 (121)
T ss_pred chHHHHHHHHHHHHHHHHcCCcceecCHHHHHhcCC
Confidence 45789999999999999997 579999999999975
No 68
>cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting
Probab=99.32 E-value=5.3e-12 Score=125.22 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=81.2
Q ss_pred EEEEEeceEEEcCCCcceEEEEEEEEecC----CceEEEEeccchHHHHHHHHHh---ccc-cCCCCCCccccC------
Q 001075 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF---FQE-YNLHLPPKHFLS------ 731 (1163)
Q Consensus 666 l~~~I~~~~~~~~g~k~y~vY~I~V~~~~----~~~W~V~RRYSdF~~Lh~~L~~---~~~-~~p~LP~Kk~f~------ 731 (1163)
+.+.|.++-..++ ++.|+|.....- .....|.||||||.+||.+|.+ +++ ..||+|+|..+.
T Consensus 3 l~i~vsD~~~~~d----~V~Y~V~TkTtl~~F~~~ef~V~RRysDFlwL~~~L~e~~~~~G~IIPPlPeK~~~~~~~~k~ 78 (141)
T cd07291 3 LQIDIPDALSERD----KVKFTVHTKTTLPSFQSPDFSVTRQHEDFIWLHDALIETEDYAGLIIPPAPPKPDFDGPREKM 78 (141)
T ss_pred cEEEeccccccCC----CEEEEEEeCCCCccccCCccEEEeccHHHHHHHHHHhccccCCeEEECCCCCCccccchHHhh
Confidence 5677777755544 699999886541 5678999999999999999994 566 469999998872
Q ss_pred -------CCCC-HHHHHHH--------------HHHHHHHHHHHhcCCCcCCChhhhcccCcC
Q 001075 732 -------TGLD-VSVIQER--------------CKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1163)
Q Consensus 732 -------~n~~-~~flEkR--------------r~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~ 772 (1163)
+++. .+|++.| +.+||.|||+|..||.+++++.|+.||+.+
T Consensus 79 ~kl~~~~~~~~~eef~~~r~~~~~~~~~~~kk~~a~lE~fL~Ria~HP~l~~d~~f~~FLe~~ 141 (141)
T cd07291 79 QKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVQVHEVFLQRLSSHPSLSKDRNFHIFLEYD 141 (141)
T ss_pred hhcccCcccccHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCeeccCcchhhhccCC
Confidence 2233 4566644 356999999999999999999999999864
No 69
>cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transfo
Probab=99.32 E-value=6.7e-12 Score=124.34 Aligned_cols=103 Identities=15% Similarity=0.235 Sum_probs=82.8
Q ss_pred EEEEEeceEEEcCCCcceEEEEEEEEecC----CceEEEEeccchHHHHHHHHHh---ccc-cCCCCCCccccC------
Q 001075 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF---FQE-YNLHLPPKHFLS------ 731 (1163)
Q Consensus 666 l~~~I~~~~~~~~g~k~y~vY~I~V~~~~----~~~W~V~RRYSdF~~Lh~~L~~---~~~-~~p~LP~Kk~f~------ 731 (1163)
+.+.|+++-..++ .+.|.|.....- .....|.||||||.+||.+|.+ +++ ..||+|+|..|.
T Consensus 3 l~v~isD~~~~~d----~V~Y~V~TkTtlp~F~~~e~sV~RRysDF~wL~~~L~e~~~~~G~IVPPlP~K~~~~~~~~k~ 78 (141)
T cd07292 3 LQVDISDALSERD----KVKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKL 78 (141)
T ss_pred eEEEcccccccCC----ceEEEEEecccCcccCCCceEEEeccHhHHHHHHHHhhcccCCcEEECCCCCCccccchHHHH
Confidence 5677777755444 399999887652 4679999999999999999984 566 469999997762
Q ss_pred -------CCCCHHHHH---------------HHHHHHHHHHHHHhcCCCcCCChhhhcccCcC
Q 001075 732 -------TGLDVSVIQ---------------ERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1163)
Q Consensus 732 -------~n~~~~flE---------------kRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~ 772 (1163)
+++..++.+ +|+.+||.|||+|..||.++++..|+.||+++
T Consensus 79 ~klg~~~~~~~~ee~~~~~~~l~~~~~~~~kk~~a~~E~Fl~Ria~HP~l~~D~~f~~FLe~~ 141 (141)
T cd07292 79 QKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYN 141 (141)
T ss_pred HhhccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCcchhheeccC
Confidence 345555555 67788899999999999999999999999874
No 70
>cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of som
Probab=99.27 E-value=1.3e-11 Score=123.70 Aligned_cols=103 Identities=17% Similarity=0.250 Sum_probs=84.4
Q ss_pred EEEEEeceEEEcCCCcceEEEEEEEEecC----CceEEEEeccchHHHHHHHHHh---ccc-cCCCCCCcccc-------
Q 001075 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF---FQE-YNLHLPPKHFL------- 730 (1163)
Q Consensus 666 l~~~I~~~~~~~~g~k~y~vY~I~V~~~~----~~~W~V~RRYSdF~~Lh~~L~~---~~~-~~p~LP~Kk~f------- 730 (1163)
+.+.|.++--.. .++.|.|.....- .....|.|||+||.+||.+|.+ |++ ..||+|+|..+
T Consensus 3 ~~~~i~da~~~~----~~V~Y~V~TkT~l~~f~~~e~sV~RR~sDF~wL~~~L~~~~~~~g~IVPP~P~K~~~~~~~~k~ 78 (141)
T cd06892 3 LQVDISDALSER----DKVKFTVHTKTTLPTFQKPEFSVTRQHEEFVWLHDTLVENEDYAGLIIPPAPPKPDFDASREKL 78 (141)
T ss_pred eeeecccccccC----CeEEEEEEeccCCccccCCeeEEEeccHHHHHHHHHHhhccCCCeEEECCCCCCccccccccee
Confidence 445566553333 3899999887652 5789999999999999999995 677 46999999755
Q ss_pred ---C---CCCCHHHHHHHHHHH---------------HHHHHHHhcCCCcCCChhhhcccCcC
Q 001075 731 ---S---TGLDVSVIQERCKLL---------------DRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1163)
Q Consensus 731 ---~---~n~~~~flEkRr~~L---------------e~YLq~Ll~~p~l~~s~~v~~FL~~~ 772 (1163)
+ +++..+|+++|+..| +.||++|..||.+.++..|..||+++
T Consensus 79 ~klg~~d~~~~~ef~~~r~~~Le~~y~~~~~k~v~~~e~FL~RiA~HP~L~~~~~l~~FLe~~ 141 (141)
T cd06892 79 QKLGEGEGSMTKEEFEKMKQELEAEYLAIFKKTVAMHEVFLRRLASHPVLRNDANFRVFLEYE 141 (141)
T ss_pred eecccCccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCeeecCHhHHhhhcCC
Confidence 1 358899999999999 58999999999999999999999864
No 71
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=2.5e-10 Score=138.86 Aligned_cols=109 Identities=26% Similarity=0.390 Sum_probs=93.7
Q ss_pred eEEEEEeceE-EEcCCCcceEEEEEEEEecC----CceEEEEeccchHHHHHHHHHh-cccc-CCCCCCccccCC----C
Q 001075 665 KLRCEVLGAN-IVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQEY-NLHLPPKHFLST----G 733 (1163)
Q Consensus 665 ~l~~~I~~~~-~~~~g~k~y~vY~I~V~~~~----~~~W~V~RRYSdF~~Lh~~L~~-~~~~-~p~LP~Kk~f~~----n 733 (1163)
.+.+.+++.+ -..++++.|+.|.|...... .....|.|||+||..||..|.. ||+. .|++|+|..+.. .
T Consensus 109 ~~~i~~~~~~~~~~~~~~~~~~y~i~t~t~~~~~~~~~~~V~RrysDF~~L~~~L~~~~p~~~iPplP~k~~~~~~~~~~ 188 (503)
T KOG2273|consen 109 DLSITVSDPEPEIGDGMKTYVSYIIETKTSLPIFGSSEFSVRRRYSDFLWLRSKLLSKYPGRIIPPLPEKSIVGSKSGDS 188 (503)
T ss_pred heeeecCCCccccCCCccceEEEEEEEeeccCcCCCCceeEEeehhHHHHHHHHHHHHCCCCeeCCCCchhhhhccccCC
Confidence 3555566655 44566789999999998763 4568999999999999999997 9984 699999998743 5
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCcCc
Q 001075 734 LDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1163)
Q Consensus 734 ~~~~flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~~ 773 (1163)
++.+|+++||++|++||+.+..||.+.++..|+.||+.+.
T Consensus 189 ~s~ef~e~rr~~L~~~l~r~~~hP~l~~~~~~~~FL~~~~ 228 (503)
T KOG2273|consen 189 FSDEFIEKRRKALERFLNRLSLHPVLSNDEDFRLFLESDS 228 (503)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHhcccc
Confidence 8999999999999999999999999999999999999994
No 72
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=99.06 E-value=4.8e-10 Score=104.99 Aligned_cols=84 Identities=30% Similarity=0.350 Sum_probs=73.1
Q ss_pred EEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHhcC-CCcC
Q 001075 684 AVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQL-PTVS 760 (1163)
Q Consensus 684 ~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~~~~flEkRr~~Le~YLq~Ll~~-p~l~ 760 (1163)
.+|.|+|...++..-.|+|+|.||.+||++|++ ||. ..|.||.+-.+ +-.+. -++|.+.||.||+.|++. ++++
T Consensus 13 ~lY~i~V~~sd~~~t~v~Rs~eeF~eLH~~L~~~FP~~~LP~fP~~~~~-~~~~~--~~~R~~~L~~Yl~~Ll~~~~eVa 89 (101)
T cd06896 13 NLYLVQVTQSCNLVSLTEKSFEQFSELHSQLQKQFPSLALPEFPHWWHL-PFTDS--DHKRVRDLNHYLEQLLSGSREVA 89 (101)
T ss_pred eEEEEEEEEeCCCcceeeecHHHHHHHHHHHHHHCccccccCCCCcccc-CcccH--HHHHHHHHHHHHHHHHccCHHHh
Confidence 479999999888889999999999999999997 998 56999999655 33333 378999999999999996 6899
Q ss_pred CChhhhcccC
Q 001075 761 GSIEVWDFLS 770 (1163)
Q Consensus 761 ~s~~v~~FL~ 770 (1163)
+|+.|..|+.
T Consensus 90 ~sd~v~sFF~ 99 (101)
T cd06896 90 NSDCVLSFFL 99 (101)
T ss_pred cchHHHHHhh
Confidence 9999999985
No 73
>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.5e-09 Score=123.94 Aligned_cols=106 Identities=24% Similarity=0.345 Sum_probs=92.9
Q ss_pred ceeEEEEEeceEE--EcCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCCCHHH
Q 001075 663 FFKLRCEVLGANI--VKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSV 738 (1163)
Q Consensus 663 ~~~l~~~I~~~~~--~~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~~~~f 738 (1163)
...++|.|.+... .-.|.|+|+.|.+.-+.. ..| |.|||+.|.+||.+|.. |+. ..|+||.|..- +.+..+|
T Consensus 183 ~~~~~c~v~~p~k~sk~kg~ks~i~y~ltpt~t--~~~-v~rrykhfdwl~~rl~~kf~~i~vp~Lpdkq~~-gr~Ee~f 258 (490)
T KOG2528|consen 183 PSPFRCVVDDPKKESKFKGLKSYIAYQLTPTHT--NIS-VSRRYKHFDWLYERLLLKFPLIPVPPLPDKQVT-GRFEEDF 258 (490)
T ss_pred CCCeeEEecCcccccccccchheeEeeeccccc--Ccc-hhhcccccHHHHHHHHhhcccccCCCCCccccc-cchhHHH
Confidence 4468899988743 336789999999976655 234 99999999999999995 877 45999999988 9999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCCChhhhcccCcC
Q 001075 739 IQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1163)
Q Consensus 739 lEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~ 772 (1163)
|++||++|+.|++.++.||.+.+|+.++.||...
T Consensus 259 i~~rr~~l~~wm~~~~~hpvlsq~evf~hFl~c~ 292 (490)
T KOG2528|consen 259 IEKRRKGLQWWMNHMCRHPVLSQCEVFQHFLTCP 292 (490)
T ss_pred HHHHHHHHHHHHHHhhcchHhhhhHHHHHHHcCC
Confidence 9999999999999999999999999999999996
No 74
>KOG2101 consensus Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s) [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=98.66 E-value=1.4e-07 Score=110.46 Aligned_cols=93 Identities=19% Similarity=0.206 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCCCCCCCCCccCCcccCCCCCCHHHHHHHHHH
Q 001075 1003 AFDDWLMEKIQLLRRGSVVASGIKRLEQILWPDGIFLTKRPKRRQVPPSSSSQGSPQVRQPAEISSPGLSEEQKQEADRR 1082 (1163)
Q Consensus 1003 tIdr~i~~~i~~l~se~~v~~~I~~lr~~lWP~G~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~pr~s~eek~et~~~ 1082 (1163)
.+...+.+...|..+++.+...+...+..+|++|.+...... + +.+.+..+...
T Consensus 270 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~-~~~~~~~~~~~ 323 (362)
T KOG2101|consen 270 EILAKLVDPLKLLLSEEQVPLDLLRFRLHLWLLGLFSPLLQS-------------------------R-TAELKQITQLG 323 (362)
T ss_pred hhhhhcCCchhHhHhHhhhhHHHhhhhHhhccccCcCccccC-------------------------c-hHHHHHHHhcc
Confidence 677788888899999999999999999999999988632211 2 56677777666
Q ss_pred HHHHHHHHhhcCCcccccccChHHHHHHHHHHHHHhcChHHH
Q 001075 1083 AKFVFELMIDKAPAPVVGLVGRKEYEQCAKDLYYFIQSSVCL 1124 (1163)
Q Consensus 1083 A~~v~~~L~~~~P~~L~~liG~~~~~~ga~~if~~lQ~~~ln 1124 (1163)
+. ..+.+.+|+.++..+|..+.+.|+..++.+||...+|
T Consensus 324 ~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~ 362 (362)
T KOG2101|consen 324 AL---NKLDDSLPDELRSLIRAYTSRKGIEAIFEILQPSGLN 362 (362)
T ss_pred ch---hhhHHhhhHHHHhhhhhhHHHHHHHHHHHHhccccCC
Confidence 65 6788999999999999999999999999999987643
No 75
>KOG3784 consensus Sorting nexin protein SNX27 [General function prediction only; Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=3.9e-07 Score=103.88 Aligned_cols=88 Identities=26% Similarity=0.406 Sum_probs=77.4
Q ss_pred CCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHhcC
Q 001075 679 DSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQL 756 (1163)
Q Consensus 679 g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~~~~flEkRr~~Le~YLq~Ll~~ 756 (1163)
+...|++|.|++.. ...+.+||++|..||..|+. |.. ..|.||+|+.| .+++.-+++||.+||+||+.+.++
T Consensus 13 ~~~~ytaynih~nG----~~~~~~r~s~~~~l~~~lr~~~~~~~~p~~p~k~~f--~L~~~~~~~rr~~leqylqa~~q~ 86 (407)
T KOG3784|consen 13 SLERYTAYNIHING----RQHGSVRYSQLVELHEQLKKHFYDYCLPQFPPKKLF--KLTPQQLDSRRRGLEQYLQAVCQD 86 (407)
T ss_pred Ccccccceeeeecc----eeEEEEehHHHHhHHHHHHHHhhcccCCCCCccccc--CCChhhhHHHHHHHHHHHHHHhcC
Confidence 56789999998854 47889999999999999996 555 46999999999 799999999999999999999999
Q ss_pred CCcCCChhhhcccCcC
Q 001075 757 PTVSGSIEVWDFLSVD 772 (1163)
Q Consensus 757 p~l~~s~~v~~FL~~~ 772 (1163)
|.+..+..+..||.--
T Consensus 87 ~~l~~s~~~~~fL~~~ 102 (407)
T KOG3784|consen 87 PVLARSELVQKFLMRA 102 (407)
T ss_pred ccccchhhhhHHHHhc
Confidence 9999988888887544
No 76
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=98.38 E-value=5.2e-07 Score=109.07 Aligned_cols=99 Identities=20% Similarity=0.210 Sum_probs=77.9
Q ss_pred eEEEEEeceEEEc-CCCcceEEEEEEEEecC----CceE---EEEeccchHHHHHHHHHh-ccc-cCCCCCCccccC---
Q 001075 665 KLRCEVLGANIVK-SDSRTFAVYAIAVTDSN----NNSW---SIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLS--- 731 (1163)
Q Consensus 665 ~l~~~I~~~~~~~-~g~k~y~vY~I~V~~~~----~~~W---~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~--- 731 (1163)
.+.+..+...... +..+.|+.|.|.-.... ...- +|.||||||..||..|.. ||. ..|+||+|++.+
T Consensus 132 ~~~~~~p~s~~~~~~s~~~~~~y~i~~~~n~~~f~~~~~~~~~V~RRySdf~~Lh~~L~~~~p~~~iPplP~K~~~s~~~ 211 (524)
T COG5391 132 SSTVSNPQSLTLLVDSRDKHTSYEIITVTNLPSFQLRESRPLVVRRRYSDFESLHSILIKLLPLCAIPPLPSKKSNSEYY 211 (524)
T ss_pred hhccccchhcccccccCCCcceeeEEEeecCccccccccccceeeeccccHHHHHHHhhhhCCCCCCCCCCchhhhcccc
Confidence 3344444443322 23467899988776653 2333 999999999999999997 887 469999999884
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHHhcCCCcCCCh
Q 001075 732 -TGLDVSVIQERCKLLDRYLKMLLQLPTVSGSI 763 (1163)
Q Consensus 732 -~n~~~~flEkRr~~Le~YLq~Ll~~p~l~~s~ 763 (1163)
++++++|+++|+..|+.|++.+..+|.+.++.
T Consensus 212 ~~~~~~~~i~~r~~~L~~~~~~~~~hp~lsn~~ 244 (524)
T COG5391 212 GDRFSDEFIEERRQSLQNFLRRVSTHPLLSNYK 244 (524)
T ss_pred ccccchHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 58999999999999999999999999999765
No 77
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.99 E-value=1.1e-05 Score=100.90 Aligned_cols=107 Identities=25% Similarity=0.301 Sum_probs=87.5
Q ss_pred EEEEEeceEEEcCCCcceEEEEEEEEecCC-ceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCCCHHHHHHH
Q 001075 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSNN-NSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQER 742 (1163)
Q Consensus 666 l~~~I~~~~~~~~g~k~y~vY~I~V~~~~~-~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~~~~flEkR 742 (1163)
..+.|..++..-. ..++..|.|+|++.+. ..-.++|-|.||.+||.+|+. ||. ..|.||..-..+.+.-.+..|+|
T Consensus 1376 ~~v~v~~f~K~~~-pnK~YmYvveV~r~n~~e~s~i~RsF~EF~ElH~KL~~~Fp~~~Lp~fP~~~~~grsnikaVA~kR 1454 (1639)
T KOG0905|consen 1376 SEVTVLKFEKHYS-PNKIYMYVVEVTRENQAEPSFIFRSFEEFQELHNKLRARFPSMKLPSFPHRIHLGRSNIKAVAEKR 1454 (1639)
T ss_pred EEEEEEEeeeecc-CCceEEEEEEEEecCCCCchHHHHhHHHHHHHHHHHHHhCccccCCCCCceeeecccchhHHHHHH
Confidence 3566666655433 3346699999999853 567899999999999999996 998 67889988777556667899999
Q ss_pred HHHHHHHHHHHhcC-CCcCCChhhhcccCcCc
Q 001075 743 CKLLDRYLKMLLQL-PTVSGSIEVWDFLSVDS 773 (1163)
Q Consensus 743 r~~Le~YLq~Ll~~-p~l~~s~~v~~FL~~~~ 773 (1163)
+..|+.||+.|++- +++++|+.|+.|+..--
T Consensus 1455 ~~~ln~yl~~L~nas~EVa~cDlVyTFFhpll 1486 (1639)
T KOG0905|consen 1455 IIELNKYLISLFNASDEVAHCDLVYTFFHPLL 1486 (1639)
T ss_pred HHHHHHHHHHHhcCCchhhccceeeeeechhh
Confidence 99999999999996 68999999999998763
No 78
>KOG4773 consensus NADPH oxidase [Energy production and conversion]
Probab=97.61 E-value=5.1e-05 Score=85.40 Aligned_cols=115 Identities=23% Similarity=0.297 Sum_probs=90.5
Q ss_pred eEEEEEeceEEEcCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccc----------cCCCCCCccccCCC
Q 001075 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE----------YNLHLPPKHFLSTG 733 (1163)
Q Consensus 665 ~l~~~I~~~~~~~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~----------~~p~LP~Kk~f~~n 733 (1163)
.+.+.|.+++..-. -.++.+|.|+|...++....|+|||.||+++|.+|++ |+. ..|+||.+.+| .
T Consensus 21 ~~~~kvi~~eke~~-f~~hFvyVievkw~~~se~vVyrry~E~~~~tkklee~f~~ss~k~t~l~~n~p~LpA~v~f--d 97 (386)
T KOG4773|consen 21 AIPAKVIDAEKERS-FTSHFVYVIEVKWYGGSEGVVYRRYFEFHALTKKLEERFGPSSGKSTALACNLPTLPAIVYF--D 97 (386)
T ss_pred cchHHHHhHHHhcc-cchheEEEEEehhhccccceeeeehhhhhhhcchHhhcCCCcccccCchhccCCCCcceeEe--c
Confidence 34445555542222 2236799999998877899999999999999999998 764 14899999999 4
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCC-cCCChhhhcccCcCchhHHHHHHh
Q 001075 734 LDVSVIQERCKLLDRYLKMLLQLPT-VSGSIEVWDFLSVDSQVIIFISLS 782 (1163)
Q Consensus 734 ~~~~flEkRr~~Le~YLq~Ll~~p~-l~~s~~v~~FL~~~~~~i~~~~~~ 782 (1163)
+..+-.|+|...|+.|+..|+..|. +..++.+..|+-...+++.-+.++
T Consensus 98 fkqe~Ae~r~~~ln~y~e~LlslPi~~l~~p~l~~fffvsp~D~~dVpea 147 (386)
T KOG4773|consen 98 FKQEIAEERIPALNAYCEWLLSLPIGRLGGPGLRPFFFVSPYDSEDVPEA 147 (386)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcchhhcCCCCceeeeeeccchHhhhhHH
Confidence 6778899999999999999999996 557899999999998865444443
No 79
>cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. RICS is a Rho GTPase-activating protein for cdc42 and Rac1. It is implicated in the regulation of postsynaptic signaling and neurite outgrowth. An N-terminal splicing variant of RICS containing additional PX and Src Homology 3 (SH3) domains, also called PX-RICS, is the main isoform expressed during neural development. PX-RICS is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and
Probab=97.47 E-value=0.00043 Score=66.67 Aligned_cols=83 Identities=19% Similarity=0.352 Sum_probs=66.2
Q ss_pred eEEEEEEEEecCCceEEEEeccchHHHHHHHHHh--ccc---cCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHhcC-
Q 001075 683 FAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF--FQE---YNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQL- 756 (1163)
Q Consensus 683 y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~--~~~---~~p~LP~Kk~f~~n~~~~flEkRr~~Le~YLq~Ll~~- 756 (1163)
=++|.|.|+.. +.+|.|+|+|-||.-|.++|.. |-- ..+.||++... .-.++++ ...|..||.++..+
T Consensus 27 e~~~~v~v~Cq-grsw~VkRSyEdfr~LD~~LHrCvyDRrfS~L~eLp~~~~l--~~~~~~v---~~~l~~YL~RlS~Ia 100 (115)
T cd07298 27 ELVYLVQIACQ-GRSWIVKRSYEDFRVLDKHLHLCIYDRRFSQLPELPRSDSL--KDSPESV---TQMLMAYLSRLSAIA 100 (115)
T ss_pred CeEEEEEEEeC-CCceEEEeeHHHHHHHHHHHHHHHHhhhhhccccCCCcccc--cccHHHH---HHHHHHHHHHHHHHh
Confidence 37999999998 8899999999999999999997 322 36789997754 3446666 46899999999987
Q ss_pred CCcCCChhhhcccCc
Q 001075 757 PTVSGSIEVWDFLSV 771 (1163)
Q Consensus 757 p~l~~s~~v~~FL~~ 771 (1163)
....+|-.+..||++
T Consensus 101 ~~~~nCGPvLtWlei 115 (115)
T cd07298 101 GNKINCGPALTWMEI 115 (115)
T ss_pred hCCccchhcceeeeC
Confidence 456677888888763
No 80
>cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. TCGAP (Tc10/Cdc42 GTPase-activating protein) contains N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal proline-rich regions. It is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It interacts with cdc42 and TC10beta through its GAP domain and with phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P2] through its PX domain. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. TCGAP has also been named sorting nexins 26 (SNX26). SNXs
Probab=97.02 E-value=0.0022 Score=61.41 Aligned_cols=85 Identities=25% Similarity=0.364 Sum_probs=63.6
Q ss_pred cceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh--ccc---cCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHhc
Q 001075 681 RTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF--FQE---YNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQ 755 (1163)
Q Consensus 681 k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~--~~~---~~p~LP~Kk~f~~n~~~~flEkRr~~Le~YLq~Ll~ 755 (1163)
.+.++|.|+|+.. +++|.|.|.|-||..|.++|.. |-- ....||+---. + ... +.=...|..||.+|..
T Consensus 23 ~k~~~flv~V~cq-grsW~v~RSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~~l-~-~~~---~~~~~~l~~YL~RlS~ 96 (113)
T cd07299 23 EKDLVFLVQVTCQ-GRSWMVLRSYEDFRTLDAHLHRCIFDRRFSQLLELPPLCEI-G-DRL---QILTPLLSEYLNRLTG 96 (113)
T ss_pred CCceEEEEEEEec-CcceEEeeeHHHHHHHHHHHHHHHHhhhhhhhhccCccccc-c-chH---HHHHHHHHHHHHHHHH
Confidence 3468999999998 8899999999999999999997 332 34677776322 1 122 2234689999999998
Q ss_pred C-CCcCCChhhhcccCc
Q 001075 756 L-PTVSGSIEVWDFLSV 771 (1163)
Q Consensus 756 ~-p~l~~s~~v~~FL~~ 771 (1163)
+ ....+|-.+..|+++
T Consensus 97 Ia~~~inCGPVLtWmeI 113 (113)
T cd07299 97 IVDSNLNCGPVLTWMEI 113 (113)
T ss_pred HhcCCccccccceeeeC
Confidence 7 456677888888763
No 81
>cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this family include PX-RICS, TCGAP (Tc10/Cdc42 GTPase-activating protein), and similar proteins. They contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. They act as Rho GTPase-activating proteins. PX-RICS is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. TCGAP is widely expressed in the brain where it is involved in regulating the outgrowth of axons and d
Probab=96.96 E-value=0.003 Score=60.75 Aligned_cols=85 Identities=22% Similarity=0.376 Sum_probs=64.7
Q ss_pred cceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh--ccc---cCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHhc
Q 001075 681 RTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF--FQE---YNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQ 755 (1163)
Q Consensus 681 k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~--~~~---~~p~LP~Kk~f~~n~~~~flEkRr~~Le~YLq~Ll~ 755 (1163)
.+.++|.|+|+.+ +++|.|+|.|-||.-|.++|.. |-- ....||+--.. +-..+-+ ...|..||.++..
T Consensus 24 ~k~~~~~v~V~cq-g~sW~VkRSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~~~--~~~~~~~---~~~l~~YL~RlS~ 97 (114)
T cd07278 24 GKELVYLVQVQCQ-GKSWLVKRSYDDFRMLDKHLHQCIYDRKFSQLTELPEECIE--KREQQNL---HQVLSDYLKRLSS 97 (114)
T ss_pred CCceEEEEEEEeC-CcceEEEeeHHHHHHHHHHHHHHHHhhhhhccccCCccccc--cchHHHH---HHHHHHHHHHHHH
Confidence 3468999999999 8999999999999999999997 332 34677774322 2233333 4689999999998
Q ss_pred C-CCcCCChhhhcccCc
Q 001075 756 L-PTVSGSIEVWDFLSV 771 (1163)
Q Consensus 756 ~-p~l~~s~~v~~FL~~ 771 (1163)
+ ....+|-.+..||++
T Consensus 98 Ia~~~inCGPvLtWlei 114 (114)
T cd07278 98 IAGNLLNCGPVLNWLEL 114 (114)
T ss_pred HhcCcccchhcceeeeC
Confidence 7 456778888888763
No 82
>KOG2101 consensus Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s) [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=92.84 E-value=0.076 Score=62.59 Aligned_cols=86 Identities=30% Similarity=0.494 Sum_probs=63.7
Q ss_pred CCCcceEEEEEEEEecCCc----eEEEEeccchHHHHHHHHHh-c-cccC---CCCC---CccccCCCCCHHHHHHHHHH
Q 001075 678 SDSRTFAVYAIAVTDSNNN----SWSIKRRFRHFEELHRRLKF-F-QEYN---LHLP---PKHFLSTGLDVSVIQERCKL 745 (1163)
Q Consensus 678 ~g~k~y~vY~I~V~~~~~~----~W~V~RRYSdF~~Lh~~L~~-~-~~~~---p~LP---~Kk~f~~n~~~~flEkRr~~ 745 (1163)
+..+.|++|.|.|...+.. .|+|+|||+||+.||.+|++ | +... +.+| +++.+.++++..++.+|+..
T Consensus 130 ~~~~~~~vy~~~v~~~~~~~~~~~~~V~rRysdf~~l~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 209 (362)
T KOG2101|consen 130 EKSKSFTVYKVTVSVSSRREDLSTAVVSRRYSDFSRLHRRLKRQFNPALRFPGPKFRNEIQKKKLLGNFDADVIPERSEA 209 (362)
T ss_pred ccccceeEEEEEEEecCCCccCcCceeeechhHHHHHHHHHHHhcCccccCCCccchhHHHHHHhhccchhhhhhhhhhh
Confidence 3446799999999988333 59999999999999999998 7 4432 3333 22233389999999999999
Q ss_pred HHHHH--HHHhcCCCcCCCh
Q 001075 746 LDRYL--KMLLQLPTVSGSI 763 (1163)
Q Consensus 746 Le~YL--q~Ll~~p~l~~s~ 763 (1163)
++.|| +.....+...++.
T Consensus 210 ~~~fl~~~f~~~~~~~~~~~ 229 (362)
T KOG2101|consen 210 LEEFLSLQFKDSKPSNVNCK 229 (362)
T ss_pred HHHHHHhhhhhccccccchH
Confidence 99999 5555555554443
No 83
>PLN02866 phospholipase D
Probab=78.57 E-value=3.7 Score=53.99 Aligned_cols=91 Identities=23% Similarity=0.298 Sum_probs=64.2
Q ss_pred eEEEEEEEEecCCceEEEEeccchHHHHHHHHHh--cc---------------c-----cC--------C---CCCC---
Q 001075 683 FAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF--FQ---------------E-----YN--------L---HLPP--- 726 (1163)
Q Consensus 683 y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~--~~---------------~-----~~--------p---~LP~--- 726 (1163)
--.|+|+++.. ...|.+++.=++-.-||-.|++ |- + .. + ..|-
T Consensus 32 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (1068)
T PLN02866 32 LLSYTIELQYK-QFKWTLYKKASQVLYLHFALKKRAFIEELHEKQEQVKEWLQNLGIGDHPAVVQDDDEPDDGTVPLHHD 110 (1068)
T ss_pred EEEEEEEEEEe-eeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccccccccccccccch
Confidence 35799999998 7899999998887766666653 21 0 00 0 1221
Q ss_pred ----------cccc---C--CCCCHHHHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCcCch
Q 001075 727 ----------KHFL---S--TGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQ 774 (1163)
Q Consensus 727 ----------Kk~f---~--~n~~~~flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~~~ 774 (1163)
.-.+ . -.-.+.+...++.+||.||+.+|.+..++++.++++||+.+.-
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~yL~~~l~~~~~~n~~~~~~FlevS~l 173 (1068)
T PLN02866 111 ESAKNRDVPSSAALPVIRPALGRQQSISDRAKVAMQEYLNHFLGNLDIVNSREVCKFLEVSKL 173 (1068)
T ss_pred hhcccCCCcchhhcceeccccCCCccccHHHHHHHHHHHHHHhccchhcCCHhhhhheeecee
Confidence 1111 0 1234456677777899999999999999999999999999964
No 84
>KOG1660 consensus Sorting nexin SNX6/TFAF2, contains PX domain [Defense mechanisms]
Probab=75.75 E-value=5.3 Score=46.28 Aligned_cols=90 Identities=16% Similarity=0.205 Sum_probs=63.2
Q ss_pred EEEEEEEEec---CCceEEEEeccchHHHHHHHHHh---ccc-cCCCCCCccccC-------------CCCCHHHHHHHH
Q 001075 684 AVYAIAVTDS---NNNSWSIKRRFRHFEELHRRLKF---FQE-YNLHLPPKHFLS-------------TGLDVSVIQERC 743 (1163)
Q Consensus 684 ~vY~I~V~~~---~~~~W~V~RRYSdF~~Lh~~L~~---~~~-~~p~LP~Kk~f~-------------~n~~~~flEkRr 743 (1163)
+-|++.+... ......|.|---+|++||..+.+ |.+ ..|+-||+.-|- ++++.+-.-+=+
T Consensus 40 vK~tv~t~t~lp~~~~e~~v~r~Heef~wlh~~i~~~e~yaG~iiPp~p~~p~fda~reklQkLGeGe~~mTkEEf~KmK 119 (399)
T KOG1660|consen 40 VKFTVHTRTTLPLFMPEFSVVRQHEEFVWLHDTIEENEDYAGVIIPPAPPRPDFDASREKLQKLGEGEGWMTKEEFLKMK 119 (399)
T ss_pred ceeeEEEeeeccCCCCccceeeeecceeeeeehhhhccCcCceecCCCCCCCCCCCChHHHHHhcCCcccccHHHHHHHH
Confidence 3455555443 13456788888999999999995 444 357777776551 345544333333
Q ss_pred HHH---------------HHHHHHHhcCCCcCCChhhhcccCcCc
Q 001075 744 KLL---------------DRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1163)
Q Consensus 744 ~~L---------------e~YLq~Ll~~p~l~~s~~v~~FL~~~~ 773 (1163)
..| +.||++|..+|.++....+..||+++.
T Consensus 120 ~elEaeyLA~fKKTvamhEvfl~RlaahPvlr~d~nf~vflEy~q 164 (399)
T KOG1660|consen 120 QELEAEYLARFKKTVAMHEVFLRRLAAHPVLRLDQNFSVFLEYDQ 164 (399)
T ss_pred HHhhhHHHHHHHHhhccHHHHHHHHhcCCeeecccchhhhhhhcc
Confidence 333 569999999999999999999999994
No 85
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=50.02 E-value=15 Score=47.61 Aligned_cols=84 Identities=19% Similarity=0.333 Sum_probs=63.2
Q ss_pred eEEEEEEEEecCCceEEEEeccchHHHHHHHHHh---cccc--------------CCCCCCccccCCCCCHHHHHHHHHH
Q 001075 683 FAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF---FQEY--------------NLHLPPKHFLSTGLDVSVIQERCKL 745 (1163)
Q Consensus 683 y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~---~~~~--------------~p~LP~Kk~f~~n~~~~flEkRr~~ 745 (1163)
-..|++....+ ...|+|++-|..|..+|..|.. +... .|..|..... . . -+|++.
T Consensus 66 ~~~y~v~L~hG-~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~-----~-~~~~~~ 137 (887)
T KOG1329|consen 66 SGSYTVELLHG-TLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGPRSSLN-S-----S-MEKRKT 137 (887)
T ss_pred CcceeeeeecC-cEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCccCCcc-c-----c-hhhhhh
Confidence 46899999998 8889999999999999999963 1110 1222222222 1 1 345566
Q ss_pred HHHHHHHHhcCCCcCCChhhhcccCcCch
Q 001075 746 LDRYLKMLLQLPTVSGSIEVWDFLSVDSQ 774 (1163)
Q Consensus 746 Le~YLq~Ll~~p~l~~s~~v~~FL~~~~~ 774 (1163)
++.||..++..+.+.+...+.+||+.+..
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~ 166 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRW 166 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchh
Confidence 99999999999999999999999998864
No 86
>PF14571 Di19_C: Stress-induced protein Di19, C-terminal
Probab=35.22 E-value=45 Score=32.82 Aligned_cols=25 Identities=32% Similarity=0.625 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhc
Q 001075 1069 PGLSEEQKQEADRRAKFVFELMIDK 1093 (1163)
Q Consensus 1069 pr~s~eek~et~~~A~~v~~~L~~~ 1093 (1163)
+++|.+|+.|.++||.+|+.+|+..
T Consensus 80 ~~lS~ee~eEk~~RseFVQ~LllST 104 (105)
T PF14571_consen 80 SSLSDEEQEEKAQRSEFVQGLLLST 104 (105)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 3569999999999999999998764
No 87
>smart00315 RGS Regulator of G protein signalling domain. RGS family members are GTPase-activating proteins for heterotrimeric G-protein alpha-subunits.
Probab=32.54 E-value=4.5 Score=38.83 Aligned_cols=59 Identities=10% Similarity=0.114 Sum_probs=42.2
Q ss_pred ChhHHHHHHhhhcccccccccchhhhcccccceeccccccccccccccccccccCcccccCCcccccccCCCCCCccccc
Q 001075 393 EWPEKLDLISRRKTRALAPEHFDNMWTKGRNYKRKEGENWVNEQHSVLKSATADGSKAMEKPKEKNTMTNVKPSMTRTTS 472 (1163)
Q Consensus 393 ~~~~~Ld~~~~r~~q~l~pE~l~~~w~~g~~yk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1163)
....+.+++........ ..||..+++|+..... ......+
T Consensus 11 ~~~~F~~fl~~~~~~e~-----l~F~~~v~~~~~~~~~-----------------------------------~~~~~~a 50 (118)
T smart00315 11 GRLLFREFLESEFSEEN-----LEFWLAVEEFKKAEDD-----------------------------------EERIAKA 50 (118)
T ss_pred HHHHHHHHHHHhcchHh-----HHHHHHHHHHHhcCCH-----------------------------------HHHHHHH
Confidence 56788888877554433 6899999999876210 1134557
Q ss_pred cccccccccCCCCCccccc
Q 001075 473 DRYSDKLKIDNSFPHADWK 491 (1163)
Q Consensus 473 ~~~~~qyl~~~~~~~~~~~ 491 (1163)
..||++|+.+.+...+.++
T Consensus 51 ~~I~~~yi~~~s~~~~ni~ 69 (118)
T smart00315 51 REIYDKFLSPNAPKEVNLD 69 (118)
T ss_pred HHHHHHHhCCCCCCceeCC
Confidence 7899999998877666665
No 88
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=28.83 E-value=1.2e+02 Score=29.15 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHhhHHHHHHHHHH
Q 001075 20 KRIVILVICVAGLSYLMSLTSSSVLVNMPAAASLIIL 56 (1163)
Q Consensus 20 ~r~v~~~~~~~~la~~l~~ts~s~w~n~p~a~l~~~~ 56 (1163)
.|+-.+|++.+.+||++=-+-.+.|+-+|+|+++.++
T Consensus 43 ~nIA~FcI~tvlfsFvfLs~kl~t~~Af~~Ai~~Sl~ 79 (90)
T PF11674_consen 43 ANIAFFCIFTVLFSFVFLSLKLNTFWAFPLAILISLA 79 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3677888888889995544446778889999988765
No 89
>KOG3590 consensus Protein kinase A anchoring protein [Signal transduction mechanisms]
Probab=20.42 E-value=33 Score=40.81 Aligned_cols=31 Identities=13% Similarity=0.296 Sum_probs=24.4
Q ss_pred CChhHHHHHHhhhcccccccccchhhhcccccceec
Q 001075 392 GEWPEKLDLISRRKTRALAPEHFDNMWTKGRNYKRK 427 (1163)
Q Consensus 392 ~~~~~~Ld~~~~r~~q~l~pE~l~~~w~~g~~yk~~ 427 (1163)
..+++|+-++.-|+.- ||.-||+.+||||..
T Consensus 123 ~~LSYFiQYLD~r~~L-----~LIKFwl~~E~FKs~ 153 (602)
T KOG3590|consen 123 IVLSYFIQYLDLRRML-----HLIKFWLEAESFKST 153 (602)
T ss_pred hHHHHHHHHHHHHhHH-----HHHHHHHhhhhhhHH
Confidence 3688998888776544 449999999999964
Done!