Query 001075
Match_columns 1163
No_of_seqs 457 out of 1515
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 09:46:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001075.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001075hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xte_A Serine/threonine-protei 99.8 1E-20 3.5E-25 193.1 11.2 108 665-774 7-116 (154)
2 3iq2_A Sorting nexin-7; SNX7, 99.8 2.8E-20 9.6E-25 186.5 12.0 112 663-774 6-126 (138)
3 3p0c_A Nischarin; structural g 99.8 1.8E-20 6.1E-25 186.1 8.3 106 666-777 23-129 (130)
4 2v14_A Kinesin-like motor prot 99.8 6.6E-20 2.3E-24 182.9 10.7 108 665-774 5-117 (134)
5 3lui_A Sorting nexin-17, SNX17 99.8 2.9E-20 1E-24 180.7 7.3 104 665-774 3-110 (115)
6 2csk_A Sorting nexin 12; SNX12 99.8 1E-19 3.5E-24 184.1 10.7 110 665-774 10-132 (146)
7 1ocs_A Sorting nexin GRD19; so 99.8 1.9E-19 6.5E-24 185.3 10.9 109 665-773 35-159 (162)
8 4az9_A Sorting nexin-24; prote 99.8 4.2E-19 1.4E-23 176.0 12.1 104 664-773 21-126 (129)
9 1h6h_A Neutrophil cytosol fact 99.8 3.7E-19 1.3E-23 179.3 11.7 108 664-774 19-137 (143)
10 2ar5_A Phosphoinositide 3-kina 99.8 5.7E-19 1.9E-23 173.2 10.6 109 665-774 5-117 (121)
11 2i4k_A Sorting nexin-1, SNX1; 99.8 3.8E-20 1.3E-24 182.6 1.0 107 665-772 3-127 (128)
12 1kmd_A VAM7P, vacuolar morphog 99.8 8.8E-19 3E-23 170.8 7.8 100 665-773 5-115 (117)
13 2ett_A Sorting nexin-22; PX do 99.8 1E-18 3.5E-23 173.0 8.3 105 664-774 10-118 (128)
14 1kq6_A NCF-1, P47PHOX, neutrop 99.7 6.4E-18 2.2E-22 170.0 12.3 106 665-774 6-123 (141)
15 2iwl_X Phosphatidylinositol-4- 99.7 3.4E-18 1.2E-22 171.8 7.2 110 663-774 18-132 (140)
16 2l73_A NADPH oxidase organizer 99.7 1.7E-17 5.8E-22 168.3 8.6 109 666-774 9-129 (149)
17 2v6v_A BUD emergence protein 1 99.7 2.3E-16 7.8E-21 161.2 12.9 107 661-774 14-137 (156)
18 4akv_A Sorting nexin-33; trans 99.6 5.3E-17 1.8E-21 188.6 4.5 108 663-774 39-150 (386)
19 3dyt_A Sorting nexin-9; 3-heli 99.6 7.4E-17 2.5E-21 186.3 4.7 108 663-774 18-130 (366)
20 3hpc_X SNX5 protein; sprting n 99.6 5.7E-15 2E-19 151.3 10.3 108 663-774 9-152 (161)
21 2wwe_A Phosphoinositide-3-kina 99.5 5.7E-15 2E-19 143.5 6.8 99 665-771 25-126 (127)
22 2dyb_A Neutrophil cytosol fact 99.5 1.3E-13 4.6E-18 157.7 12.7 108 664-774 22-140 (341)
23 1cmz_A Protein (GAIP (G-alpha 46.6 1.8 6.3E-05 43.0 -2.6 59 393-491 33-91 (152)
24 2crp_A RGS5, regulator of G-pr 46.5 2.2 7.4E-05 42.4 -2.1 80 393-512 38-119 (150)
25 2dlv_A RGS18, regulator of G-p 44.9 1.5 5.1E-05 43.0 -3.6 59 393-491 28-86 (140)
26 1fqi_A RGS9, regulator of G-pr 44.4 2.1 7.2E-05 42.4 -2.5 58 393-491 34-91 (147)
27 2bv1_A Regulator of G-protein 43.6 2 6.8E-05 42.4 -2.9 58 393-491 35-92 (145)
28 2jm5_A RGS18, regulator of G-p 43.6 1.8 6.3E-05 43.0 -3.1 59 393-491 24-82 (151)
29 1agr_E RGS4; GI-alpha-1, hydro 43.1 2.5 8.6E-05 44.6 -2.3 59 393-491 72-130 (205)
30 2a72_A Regulator of G-protein 41.6 1.9 6.4E-05 42.7 -3.4 58 393-491 26-83 (146)
31 1zv4_X RGS17, regulator of G-p 40.4 1.9 6.4E-05 43.4 -3.7 59 393-491 46-104 (158)
32 2oj4_A RGS3, regulator of G-pr 39.9 1.9 6.7E-05 41.2 -3.5 59 393-491 20-78 (127)
33 2ihd_A RGS8, regulator of G-pr 37.7 2.3 7.8E-05 42.7 -3.6 59 393-491 48-106 (155)
34 3c7l_A Regulator of G-protein 37.6 1.5 5.3E-05 42.8 -4.7 59 393-491 31-89 (137)
35 2dlr_A RGS10, regulator of G-p 35.2 2.9 9.8E-05 41.5 -3.3 59 393-491 28-86 (149)
36 2ihb_B Regulator of G-protein 34.8 3.2 0.00011 41.4 -3.0 59 393-491 44-102 (153)
37 2af0_A Regulator of G-protein 31.4 2.8 9.5E-05 41.4 -4.1 59 393-491 36-94 (146)
38 1dk8_A Axin; alpha-helix, PI-h 31.3 0.36 1.2E-05 47.8 -10.6 63 393-491 25-88 (147)
39 2jnu_A RGS14, regulator of G-p 24.1 4.5 0.00015 40.3 -4.1 61 393-491 24-84 (154)
40 2pbi_A Regulator of G-protein 20.2 11 0.00039 44.0 -2.4 58 393-491 311-368 (424)
No 1
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Probab=99.83 E-value=1e-20 Score=193.14 Aligned_cols=108 Identities=24% Similarity=0.479 Sum_probs=101.0
Q ss_pred eEEEEEeceEEEcCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccccCCCCCCccccCC-CCCHHHHHHH
Q 001075 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNLHLPPKHFLST-GLDVSVIQER 742 (1163)
Q Consensus 665 ~l~~~I~~~~~~~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~~~p~LP~Kk~f~~-n~~~~flEkR 742 (1163)
.+.|+|++++.+.+|++.|++|.|+|+.. +..|.|+||||||.+||++|++ |+...++||+|++| + +++++|+|+|
T Consensus 7 ~~~v~I~~~~~~~~~~~~~~~Y~I~v~~~-~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~plP~K~~~-g~~~~~~~ie~R 84 (154)
T 1xte_A 7 CPSVSIPSSDEHREKKKRFTVYKVLVSVG-RSEWFVFRRYAEFDKLYNSLKKQFPAMALKIPAKRIF-GDNFDPDFIKQR 84 (154)
T ss_dssp CCEEEEEEEEEEEETTEEEEEEEEEEEET-TEEEEEEEEHHHHHHHHHHHHHHCGGGCCCCCCSCCS-SCTTCHHHHHHH
T ss_pred CCEEEECCcEEEecCCCCEEEEEEEEEEC-CEEEEEEeeHHHHHHHHHHHHHHCCCCcccCCCcccc-CCCCCHHHHHHH
Confidence 46899999999888889999999999987 8899999999999999999997 88766779999999 7 8999999999
Q ss_pred HHHHHHHHHHHhcCCCcCCChhhhcccCcCch
Q 001075 743 CKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQ 774 (1163)
Q Consensus 743 r~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~~~ 774 (1163)
|.+||.||+.|+.+|.+++++.|+.||+.+..
T Consensus 85 r~~Le~yL~~l~~~p~l~~s~~l~~FL~~~~~ 116 (154)
T 1xte_A 85 RAGLNEFIQNLVRYPELYNHPDVRAFLQMDSP 116 (154)
T ss_dssp HHHHHHHHHHHTTCHHHHTSHHHHHHTTTTCG
T ss_pred HHHHHHHHHHHHcChhhccChHHHHHhCCCCC
Confidence 99999999999999999999999999999865
No 2
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens}
Probab=99.82 E-value=2.8e-20 Score=186.54 Aligned_cols=112 Identities=21% Similarity=0.302 Sum_probs=99.5
Q ss_pred ceeEEEEEeceEEEcCCCcceEEEEEEEEecC----CceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccC---CC
Q 001075 663 FFKLRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLS---TG 733 (1163)
Q Consensus 663 ~~~l~~~I~~~~~~~~g~k~y~vY~I~V~~~~----~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~---~n 733 (1163)
...+.|.|.+++++.+|+++|++|.|.|+... +..|.|.||||||.+||++|++ ||. ..|+||+|+++. ++
T Consensus 6 ~~~l~i~V~dp~~~~~g~~~yv~Y~I~v~t~~~~f~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~~~~~~ 85 (138)
T 3iq2_A 6 LKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVER 85 (138)
T ss_dssp CCCCEEEEEEEEEEECSSCEEEEEEEEEESCSSSSSCCEEEEEEEHHHHHHHHHHHHHHCTTSCCCCCCCCC----CCGG
T ss_pred cceEEEEECCCEEecCCCCCEEEEEEEEEECCCCcCCCeEEEEcChHHHHHHHHHHHHHCcCcccCCCCcchhhcccccc
Confidence 45789999999999998999999999998752 4789999999999999999997 887 468999999983 24
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCcCch
Q 001075 734 LDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQ 774 (1163)
Q Consensus 734 ~~~~flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~~~ 774 (1163)
++++|||+||++||.||+.|+.+|.+++++.|..||+.++.
T Consensus 86 ~~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~~~ 126 (138)
T 3iq2_A 86 FNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQAW 126 (138)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHTTCB
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCHhhhcChHHHhhhCCCCC
Confidence 59999999999999999999999999999999999999876
No 3
>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens}
Probab=99.81 E-value=1.8e-20 Score=186.14 Aligned_cols=106 Identities=29% Similarity=0.458 Sum_probs=94.0
Q ss_pred EEEEEeceEEEcCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccccCCCCCCccccCCCCCHHHHHHHHH
Q 001075 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNLHLPPKHFLSTGLDVSVIQERCK 744 (1163)
Q Consensus 666 l~~~I~~~~~~~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~~~p~LP~Kk~f~~n~~~~flEkRr~ 744 (1163)
+.|+|.+++. ++.|++|.|+|+.+ +..|.|.||||||.+||++|++ ++...|+||+|+++ ++++++|+|+||.
T Consensus 23 ~~v~I~~~~~----~~~y~~Y~I~v~~~-~~~~~V~RRYSdF~~L~~~L~~~~~~~~p~lP~K~~~-g~~~~~~ie~Rr~ 96 (130)
T 3p0c_A 23 MEARVVGSEL----VDTYTVYIIQVTDG-SHEWTVKHRYSDFHDLHEKLVAERKIDKNLLPPKKII-GKNSRSLVEKREK 96 (130)
T ss_dssp CEEEEEEEEC----SSSSCEEEEEEECS-SCEEEEEEEHHHHHHHHHHHHHTTSSCTTSCCCCCCC-SCCCSCSHHHHHH
T ss_pred eEEEEEeccc----cCCEEEEEEEEEEC-CeEEEEEehHHHHHHHHHHHHHHcCCCCCCCCCcccc-ccCCHHHHHHHHH
Confidence 4566666543 46799999999997 8899999999999999999997 77667899999999 8899999999999
Q ss_pred HHHHHHHHHhcCCCcCCChhhhcccCcCchhHH
Q 001075 745 LLDRYLKMLLQLPTVSGSIEVWDFLSVDSQVII 777 (1163)
Q Consensus 745 ~Le~YLq~Ll~~p~l~~s~~v~~FL~~~~~~i~ 777 (1163)
+||.||+.|+.+|.++.++.|.+||+.+.++|+
T Consensus 97 ~Le~yL~~l~~~p~l~~s~~l~~FL~~~~~~~~ 129 (130)
T 3p0c_A 97 DLEVYLQKLLAAFPGVTPRVLAHFLHFHFYEIN 129 (130)
T ss_dssp HHHHHHHHHHHTSCSEECHHHHHHHHSCTTC--
T ss_pred HHHHHHHHHHcChhhhcCHHHHHHhCCCccccc
Confidence 999999999999999999999999999987544
No 4
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens}
Probab=99.80 E-value=6.6e-20 Score=182.95 Aligned_cols=108 Identities=22% Similarity=0.434 Sum_probs=97.0
Q ss_pred eEEEEEeceEEEcCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCCCHHHHHHH
Q 001075 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQER 742 (1163)
Q Consensus 665 ~l~~~I~~~~~~~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~~~~flEkR 742 (1163)
.+.++|++++++.+|++.|++|.|+|... +..|.|.||||||.+||++|++ ||. ..|+||+|++| ++++++|+|+|
T Consensus 5 ~i~VsIp~~~~~~~~~~~~~~Y~I~v~~~-~~~~~V~RRYsdF~~L~~~L~~~~p~~~~p~lP~K~~~-~~~~~~~ie~R 82 (134)
T 2v14_A 5 PIKISIPRYVLCGQGKDAHFEFEVKITVL-DETWTVFRRYSRFREMHKTLKLKYAELAALEFPPKKLF-GNKDERVIAER 82 (134)
T ss_dssp CEEEEEEEEEEESSTTSCEEEEEEEEEET-TEEEEEEECHHHHHHHHHHHHHHCGGGGGCCCCCCCSS-CTTSHHHHHHH
T ss_pred CEEEEECcEEEEecCCCCEEEEEEEEEEC-CeEEEEEeeHHHHHHHHHHHHHHCCCCCCCCCcCCccc-cCCCHHHHHHH
Confidence 57899999999988889999999999988 8899999999999999999997 887 56999999999 89999999999
Q ss_pred HHHHHHHHHHHhcCCC-cCCChhhhc--ccCcCch
Q 001075 743 CKLLDRYLKMLLQLPT-VSGSIEVWD--FLSVDSQ 774 (1163)
Q Consensus 743 r~~Le~YLq~Ll~~p~-l~~s~~v~~--FL~~~~~ 774 (1163)
|.+||.||+.|+++|. +.+|+.+.. ++..+.+
T Consensus 83 r~~Le~yL~~ll~~~~~l~~sp~~l~~~~~~~~k~ 117 (134)
T 2v14_A 83 RSHLEKYLRDFFSVMLQSATSPLHINKVGLTLSKH 117 (134)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSTTCTTSTTCCCSHH
T ss_pred HHHHHHHHHHHHhChHhhcCCHHHHccccCCccHH
Confidence 9999999999999986 888876554 4666654
No 5
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Probab=99.80 E-value=2.9e-20 Score=180.75 Aligned_cols=104 Identities=19% Similarity=0.361 Sum_probs=91.5
Q ss_pred eEEEEEeceEEEcC--CCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCCCHHHHH
Q 001075 665 KLRCEVLGANIVKS--DSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQ 740 (1163)
Q Consensus 665 ~l~~~I~~~~~~~~--g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~~~~flE 740 (1163)
.++++|++++.+.+ |+++|++|.|+|. ..|.|.||||||.+||++|++ |+. ..|+||+|+++ +++++|+|
T Consensus 3 ~l~v~Ip~~~~~~~~~g~~~y~~Y~I~v~----~~~~V~RRYsdF~~L~~~L~~~~~~~~~P~lP~K~~~--~~~~~~ie 76 (115)
T 3lui_A 3 AMHFSIPETESRSGDSGGSAYVAYNIHVN----GVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLF--SLTPAEVE 76 (115)
T ss_dssp --CEEEEEEEEEC-----CCEEEEEEEET----TEEEEEEEHHHHHHHHHHHHHHHCSTTSCCCCCCCSS--CCCHHHHH
T ss_pred cEEEEECCeEEecCCCCCCCEEEEEEEEC----CeEEEEecHHHHHHHHHHHHHHcCCCcCCCCCCCccc--CCCHHHHH
Confidence 67899999998864 6689999999984 379999999999999999997 887 46999999998 48999999
Q ss_pred HHHHHHHHHHHHHhcCCCcCCChhhhcccCcCch
Q 001075 741 ERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQ 774 (1163)
Q Consensus 741 kRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~~~ 774 (1163)
+||.+||.||+.|+.+|.+++++.|.+||+.+..
T Consensus 77 ~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~~ 110 (115)
T 3lui_A 77 QRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQ 110 (115)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcChhhhcChHHHHHHCcCHH
Confidence 9999999999999999999999999999998754
No 6
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1e-19 Score=184.11 Aligned_cols=110 Identities=19% Similarity=0.277 Sum_probs=99.5
Q ss_pred eEEEEEeceEEEcCCCcceEEEEEEEEecC----CceEEEEeccchHHHHHHHHHhccc-cCCCCCCccccC--------
Q 001075 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKFFQE-YNLHLPPKHFLS-------- 731 (1163)
Q Consensus 665 ~l~~~I~~~~~~~~g~k~y~vY~I~V~~~~----~~~W~V~RRYSdF~~Lh~~L~~~~~-~~p~LP~Kk~f~-------- 731 (1163)
.+.+.|.+++.+.+|++.|++|.|+|.... ...|.|.||||||.+||++|++.+. ..|+||+|+++.
T Consensus 10 ~l~i~V~dp~~~~~g~~~yv~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~iP~lP~K~~~~~~~~~~~~ 89 (146)
T 2csk_A 10 FLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRGDE 89 (146)
T ss_dssp CCEEEEEEEEEESSSSSCEEEEEEEEECCCSSSSCSEEEEEECHHHHHHHHHHHSSSSSCCCCCCSCCCCCCSSTTCCCS
T ss_pred cEEEEEcCceEecCCCCCEEEEEEEEEECCCCcCcCceEEEecHHHHHHHHHHHHhccCCcCCCCCCCchhhcccccccc
Confidence 578889999999888999999999998752 5789999999999999999998655 568999999883
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCcCch
Q 001075 732 TGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQ 774 (1163)
Q Consensus 732 ~n~~~~flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~~~ 774 (1163)
++++++|||+||.+||.||+.|+.+|.+++++.|..||+.+..
T Consensus 90 g~~~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~ 132 (146)
T 2csk_A 90 GIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQEEAI 132 (146)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHCHHHHHCHHHHHHTTCSSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcChhhccCcHHHhhcCCCch
Confidence 5789999999999999999999999999999999999999864
No 7
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A*
Probab=99.79 E-value=1.9e-19 Score=185.26 Aligned_cols=109 Identities=23% Similarity=0.325 Sum_probs=97.7
Q ss_pred eEEEEEeceEEE---c-CCCcceEEEEEEEEecC----CceEEEEeccchHHHHHHHHHh-c-----cc-cCCCCCCccc
Q 001075 665 KLRCEVLGANIV---K-SDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF-F-----QE-YNLHLPPKHF 729 (1163)
Q Consensus 665 ~l~~~I~~~~~~---~-~g~k~y~vY~I~V~~~~----~~~W~V~RRYSdF~~Lh~~L~~-~-----~~-~~p~LP~Kk~ 729 (1163)
-+.+.|.+++.+ + +|++.|++|.|+|+... +..|.|.||||||.+||++|++ | +. ..|+||+|++
T Consensus 35 ~l~i~V~dp~~~~~~g~~~~~~yv~Y~I~v~~~~~~f~~~~~~V~RRYsdF~~Lh~~L~~~~~~~~~p~~~iP~lP~K~~ 114 (162)
T 1ocs_A 35 FLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKIL 114 (162)
T ss_dssp CEEEEEEEEEEECCCSTTSCCCEEEEEEEEEECCTTCSCSEEEEEEEHHHHHHHHHHHHHHHHHTTCTTCCCCCCTTCCC
T ss_pred eEEEEEeCCEEeeccCCCCCCCeEEEEEEEEECCCCCCcceeEEEeeHHHHHHHHHHHHHHhccccCCCccCCCCCCCcc
Confidence 488999999888 5 67889999999998742 5789999999999999999997 7 66 4689999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhcCCCcCC-ChhhhcccCcCc
Q 001075 730 LSTGLDVSVIQERCKLLDRYLKMLLQLPTVSG-SIEVWDFLSVDS 773 (1163)
Q Consensus 730 f~~n~~~~flEkRr~~Le~YLq~Ll~~p~l~~-s~~v~~FL~~~~ 773 (1163)
++++++++|||+||.+||.||+.|+.+|.+++ ++.|..||+.++
T Consensus 115 ~~~~~~~~fie~Rr~~Le~fL~~l~~~p~l~~~s~~l~~FL~~~~ 159 (162)
T 1ocs_A 115 LSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEK 159 (162)
T ss_dssp SSCTTSHHHHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHCSS
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHcCHHhhhCCHHHHHhCCCcc
Confidence 85578999999999999999999999999998 899999999875
No 8
>4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens}
Probab=99.78 E-value=4.2e-19 Score=175.99 Aligned_cols=104 Identities=23% Similarity=0.383 Sum_probs=90.5
Q ss_pred eeEEEEEeceEEEcCC-CcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccccCCCCCCccccCCCCCHHHHHH
Q 001075 664 FKLRCEVLGANIVKSD-SRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNLHLPPKHFLSTGLDVSVIQE 741 (1163)
Q Consensus 664 ~~l~~~I~~~~~~~~g-~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~~~p~LP~Kk~f~~n~~~~flEk 741 (1163)
..+.+.|+++.++.++ +|.|++|.|+|+.+ +..|.|.||||||.+||++|++ ++ .|+||+|.+ ++++++|||+
T Consensus 21 ~~~~V~Ip~~~~~~~~~~k~y~vY~I~v~~~-~~~w~V~RRYsdF~~L~~~L~~~~~--~p~lP~K~~--~~~~~~~ie~ 95 (129)
T 4az9_A 21 QSMEVYIPSFRYEESDLERGYTVFKIEVLMN-GRKHFVEKRYSEFHALHKKLKKCIK--TPEIPSKHV--RNWVPKVLEQ 95 (129)
T ss_dssp CCCEEEEEEEEEECCTTSCCEEEEEEEEEET-TEEEEEEEEHHHHHHHHHHHTTTSC--CCCCCCSCC--SCCCHHHHHH
T ss_pred ceeEEEECcEEEEecCCCCCEEEEEEEEEEC-CEEEEEEeeHHHHHHHHHHHHHhCC--CCCCCcccc--cCCCHHHHHH
Confidence 3678999999887654 57899999999988 8899999999999999999997 54 577888874 5899999999
Q ss_pred HHHHHHHHHHHHhcCCCcCCChhhhcccCcCc
Q 001075 742 RCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773 (1163)
Q Consensus 742 Rr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~~ 773 (1163)
||.+||.||+.|+.+|.+. ++.|++||++..
T Consensus 96 Rr~~Le~yL~~ll~~~~~~-~~~l~~FL~~~~ 126 (129)
T 4az9_A 96 RRQGLETYLQAVILENEEL-PKLFLDFLNVRH 126 (129)
T ss_dssp HHHHHHHHHHHHHHHCSSC-CHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHhCchhh-CHHHHHHCCCCC
Confidence 9999999999999999875 789999999874
No 9
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1
Probab=99.78 E-value=3.7e-19 Score=179.31 Aligned_cols=108 Identities=23% Similarity=0.356 Sum_probs=96.5
Q ss_pred eeEEEEEeceEEEcCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccc---------cCCCCCCccccCCC
Q 001075 664 FKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE---------YNLHLPPKHFLSTG 733 (1163)
Q Consensus 664 ~~l~~~I~~~~~~~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~---------~~p~LP~Kk~f~~n 733 (1163)
..++|+|++++...+ +..|++|.|+|+..++..|.|+||||||.+||++|++ ||. ..|+||+|++| ++
T Consensus 19 ~~i~v~I~~~e~~~~-~~~~~vY~I~v~~~~~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~~~~~~~~lP~lP~K~~~-~~ 96 (143)
T 1h6h_A 19 VAISANIADIEEKRG-FTSHFVFVIEVKTKGGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAKVYV-GV 96 (143)
T ss_dssp CEEEEEEEEEEEECS-SSCEEEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHHSTTCSCGGGCCCCCCCCCCCCS-SC
T ss_pred CeEEEEEcCccccCC-CCCeEEEEEEEEEcCCCEEEEEeeHHHHHHHHHHHHHHCccccccCCCCCCcccCCCCccc-Cc
Confidence 368999999976543 4579999999997767899999999999999999997 884 24899999999 76
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCC-cCCChhhhcccCcCch
Q 001075 734 LDVSVIQERCKLLDRYLKMLLQLPT-VSGSIEVWDFLSVDSQ 774 (1163)
Q Consensus 734 ~~~~flEkRr~~Le~YLq~Ll~~p~-l~~s~~v~~FL~~~~~ 774 (1163)
+++|+|+||.+||.||+.|+.+|. +++|+.|++||+..+.
T Consensus 97 -~~~~ie~Rr~~Le~yL~~ll~~p~~l~~s~~~~~Fl~~~~~ 137 (143)
T 1h6h_A 97 -KQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPY 137 (143)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHcCCHhhhcCHHHHHHhCCCcc
Confidence 999999999999999999999997 8999999999999876
No 10
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A
Probab=99.77 E-value=5.7e-19 Score=173.21 Aligned_cols=109 Identities=19% Similarity=0.260 Sum_probs=94.9
Q ss_pred eEEEEEeceEEEcCCCcceEEEEEEEEecCC-ceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCCCHHHHHH
Q 001075 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSNN-NSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQE 741 (1163)
Q Consensus 665 ~l~~~I~~~~~~~~g~k~y~vY~I~V~~~~~-~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~~~~flEk 741 (1163)
...|.|.+++...++++.|+ |.|+|+..++ ..|.|+||||||.+||++|++ ||. ..|+||+|++++.+.+.+|+|+
T Consensus 5 i~~v~V~~~ek~~~~~k~y~-Y~I~v~~~~~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~g~~~~~~~~e~ 83 (121)
T 2ar5_A 5 IKEVSVFTYHKKYNPDKHYI-YVVRILREGQIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLGRTHIKDVAAK 83 (121)
T ss_dssp EEEEEEEEEECCCSSSSCCE-EEEEEEETTCSSCEEEEEEHHHHHHHHHHHHHHSCGGGSCCCCCCCCSSSSSTTHHHHH
T ss_pred EEEEEECcEEEEecCCCcEE-EEEEEEECCCceeEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCeecCccCcHHHHHH
Confidence 46899999987776666565 9999999855 699999999999999999997 988 5789999999933346789999
Q ss_pred HHHHHHHHHHHHhcC-CCcCCChhhhcccCcCch
Q 001075 742 RCKLLDRYLKMLLQL-PTVSGSIEVWDFLSVDSQ 774 (1163)
Q Consensus 742 Rr~~Le~YLq~Ll~~-p~l~~s~~v~~FL~~~~~ 774 (1163)
||.+||.||+.|++. |.+++|+.++.||.++..
T Consensus 84 Rr~~Le~yL~~ll~~p~~i~~s~~v~~Ff~~~~~ 117 (121)
T 2ar5_A 84 RKIELNSYLQSLMNASTDVAECDLVCTFFHGSHH 117 (121)
T ss_dssp HHHHHHHHHHHHHTSCHHHHTSHHHHHHTSSSCC
T ss_pred HHHHHHHHHHHHHhCCchhcCCHHHHHHcCCccc
Confidence 999999999999997 689999999999998753
No 11
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens}
Probab=99.77 E-value=3.8e-20 Score=182.56 Aligned_cols=107 Identities=21% Similarity=0.390 Sum_probs=95.6
Q ss_pred eEEEEEeceEEEcCCCcceEEEEEEEEec----CCceEEEEeccchHHHHHHHHHh-ccc---cCCCCCCccccCCC---
Q 001075 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDS----NNNSWSIKRRFRHFEELHRRLKF-FQE---YNLHLPPKHFLSTG--- 733 (1163)
Q Consensus 665 ~l~~~I~~~~~~~~g~k~y~vY~I~V~~~----~~~~W~V~RRYSdF~~Lh~~L~~-~~~---~~p~LP~Kk~f~~n--- 733 (1163)
.++|.|++++.+.+|+++|++|.|+|+.. .+..|.|.||||||.+||++|++ |+. ..|+||+|+++ ++
T Consensus 3 ~l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iP~lP~K~~~-~~~~~ 81 (128)
T 2i4k_A 3 DLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLI-GMTKV 81 (128)
T ss_dssp SCCCCBCCCCBCCCSSCCCBCCCBCCCCCSSSSCSSCCCBCCCHHHHHHHHHHHHHTCSSSSCCCCSSSSCCSS-SSSSC
T ss_pred eEEEEECCceEecCCCcCEEEEEEEEEEcCCCCCCCeEEEEeEhHHHHHHHHHHHHhCCCCCcCcCCCCCCccc-chhhh
Confidence 46788899998888889999999999875 25789999999999999999997 753 46899999998 43
Q ss_pred -------CCHHHHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCcC
Q 001075 734 -------LDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD 772 (1163)
Q Consensus 734 -------~~~~flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~ 772 (1163)
++++|+|+||.+||.||+.|+++|.+++++.|..||+.+
T Consensus 82 ~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 127 (128)
T 2i4k_A 82 KVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKE 127 (128)
T ss_dssp CCCSCCCSSTTHHHHHHHHHHHHHHHHHHCHHHHCSHHHHTTTTCC
T ss_pred hhcCCCCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhhCCC
Confidence 489999999999999999999999999999999999875
No 12
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Probab=99.75 E-value=8.8e-19 Score=170.78 Aligned_cols=100 Identities=24% Similarity=0.290 Sum_probs=88.7
Q ss_pred eEEEEEeceEEEcCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccccCC-CCCCccccC------CCCCH
Q 001075 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNL-HLPPKHFLS------TGLDV 736 (1163)
Q Consensus 665 ~l~~~I~~~~~~~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~~~p-~LP~Kk~f~------~n~~~ 736 (1163)
.+.++|+++++ ++.|++|.|+| ..|.|.||||||.+||++|++ |+...| +||+|+++. +++++
T Consensus 5 ~~~v~I~~~~~----~~~~~~Y~I~v-----~~~~V~RRYsdF~~L~~~L~~~~~~~~P~~lP~K~~~~~~~~~~~~~~~ 75 (117)
T 1kmd_A 5 KLRIKVDDVKI----NPKYVLYGVST-----PNKRLYKRYSEFWKLKTRLERDVGSTIPYDFPEKPGVLDRRWQRRYDDP 75 (117)
T ss_dssp CCCCEEEEEEE----CSSCEEEEEEC-----SSCCEEECHHHHHHHHHHHHHHHCSCCCCCCCCCCCSSCSTTCCCTTCH
T ss_pred CEEEEECCcee----cCCEEEEEEEE-----ceEEEEechHHHHHHHHHHHHHcCccCCCCCCCCCEecccccccCCCCH
Confidence 46788999887 35799999999 379999999999999999997 876667 999999862 68999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCc---CCChhhhcccCcCc
Q 001075 737 SVIQERCKLLDRYLKMLLQLPTV---SGSIEVWDFLSVDS 773 (1163)
Q Consensus 737 ~flEkRr~~Le~YLq~Ll~~p~l---~~s~~v~~FL~~~~ 773 (1163)
+|||+||.+||.||+.|+++|.+ ++++.|.+||+.++
T Consensus 76 ~~ie~Rr~~Le~yL~~l~~~p~l~~~~~s~~l~~FL~~~~ 115 (117)
T 1kmd_A 76 EMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQLSK 115 (117)
T ss_dssp HHHHHHHTTHHHHHHHHHCCSSCCHHHHSHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhhhhcCHHHHHhcCCCC
Confidence 99999999999999999999954 78999999999874
No 13
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens}
Probab=99.75 E-value=1e-18 Score=173.04 Aligned_cols=105 Identities=21% Similarity=0.406 Sum_probs=92.3
Q ss_pred eeEEEEEeceEEE---cCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccccCCCCCCccccCCCCCHHHH
Q 001075 664 FKLRCEVLGANIV---KSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNLHLPPKHFLSTGLDVSVI 739 (1163)
Q Consensus 664 ~~l~~~I~~~~~~---~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~~~p~LP~Kk~f~~n~~~~fl 739 (1163)
.++++.+.++++. .++++.|++|.|+|... +..|.|.||||||.+||++|++ |+ .|+||+|+++ +++++||
T Consensus 10 ~~~~~~~vg~ev~Ip~~~~~~~~~~Y~I~v~~~-~~~~~V~RRYSdF~~Lh~~L~~~~~--iP~lP~K~~~--~~~~~~i 84 (128)
T 2ett_A 10 LEVHIPSVGPEAEGPRQSPEKSHMVFRVEVLCS-GRRHTVPRRYSEFHALHKRIKKLYK--VPDFPSKRLP--NWRTRGL 84 (128)
T ss_dssp EEEEEEEEESCCCCCSSCSSCCCCEEEEEEEET-TEEEEEEEEHHHHHHHHHHHHTTSS--CCCCCCSSCC--CSSSSCH
T ss_pred ecccccEEeeEEEeccccCCCCEEEEEEEEEEC-CcEEEEECCHHHHHHHHHHHHHHCC--CCCCCCCccC--CCCHHHH
Confidence 3677777777762 34578999999999998 8899999999999999999997 64 6899999964 7899999
Q ss_pred HHHHHHHHHHHHHHhcCCCcCCChhhhcccCcCch
Q 001075 740 QERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQ 774 (1163)
Q Consensus 740 EkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~~~ 774 (1163)
|+||.+||.||+.|+.+|.++ ++.|.+||+.+..
T Consensus 85 e~Rr~~Le~yL~~ll~~p~~~-s~~l~~FL~~~~~ 118 (128)
T 2ett_A 85 EQRRQGLEAYIQGILYLNQEV-PKELLEFLRLRHF 118 (128)
T ss_dssp HHHHHHHHHHHHHHHHHSSSS-CHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHHHHhCchhc-CHHHHHhcCCccC
Confidence 999999999999999999877 6999999999875
No 14
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Probab=99.74 E-value=6.4e-18 Score=169.98 Aligned_cols=106 Identities=26% Similarity=0.353 Sum_probs=92.8
Q ss_pred eEEEEEeceEEEcCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-cccc----------CCCCCCccccCCC
Q 001075 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEY----------NLHLPPKHFLSTG 733 (1163)
Q Consensus 665 ~l~~~I~~~~~~~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~~----------~p~LP~Kk~f~~n 733 (1163)
..+|.|.+++....++ .|++|.|+|+..++..|.|+||||||.+||++|++ ||.. .|+||+|+++ ++
T Consensus 6 i~~v~V~~~ek~~~~~-~~~~Y~I~V~~~~~~~~~V~RRYsdF~~Lh~~L~~~fp~~~g~~~~~~~~lP~lP~K~~~-~~ 83 (141)
T 1kq6_A 6 IRHIALLGFEKRFVPS-QHYVYMFLVKWQDLSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKWF-DG 83 (141)
T ss_dssp EEEEEEEEEEEECSSS-CEEEEEEEEEETTCCEEEEEECHHHHHHHHHHHHHHCTTTTTSSCGGGCCSCCCCCCCCC-CS
T ss_pred EEEEEEccEEEecCCC-CeEEEEEEEEEcCCCEEEEEecHHHHHHHHHHHHHHCchhhcccCccccccCCCCCcccc-CC
Confidence 4589999998776543 46679999998767899999999999999999997 8752 4789999999 64
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCC-CcCCChhhhcccCcCch
Q 001075 734 LDVSVIQERCKLLDRYLKMLLQLP-TVSGSIEVWDFLSVDSQ 774 (1163)
Q Consensus 734 ~~~~flEkRr~~Le~YLq~Ll~~p-~l~~s~~v~~FL~~~~~ 774 (1163)
.+|+|+||.+||.||+.|+.+| .+++|+.|++||+..+.
T Consensus 84 --~~~~e~Rr~~Le~YL~~Ll~~p~~i~~s~~v~~Fl~~~~~ 123 (141)
T 1kq6_A 84 --QRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKVRPD 123 (141)
T ss_dssp --HHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCHH
T ss_pred --HHHHHHHHHHHHHHHHHHHhCCHhhcCChHHHHHhCCCcc
Confidence 8999999999999999999987 58999999999999876
No 15
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens}
Probab=99.72 E-value=3.4e-18 Score=171.77 Aligned_cols=110 Identities=19% Similarity=0.204 Sum_probs=88.8
Q ss_pred ceeEEEEEeceEEEcCCCcceEEEEEEEEecCC-ceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCC-CHHH
Q 001075 663 FFKLRCEVLGANIVKSDSRTFAVYAIAVTDSNN-NSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGL-DVSV 738 (1163)
Q Consensus 663 ~~~l~~~I~~~~~~~~g~k~y~vY~I~V~~~~~-~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~-~~~f 738 (1163)
....+|.|.+++....+++ |++|.|+|+..++ ..|.|+||||||.+||++|++ ||. ..|+||+|+++ ++. +.+|
T Consensus 18 ~~i~~v~I~~~ek~~~~~k-~~~Y~I~V~~~~~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~-~~~~~~~~ 95 (140)
T 2iwl_X 18 GRIKEVSVFTYHKKYNPDK-HYIYVVRILREGQIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVL-GRTHIKDV 95 (140)
T ss_dssp CCEEEEEEEEEEECCSSSS-CEEEEEEEEETTCSSCEEEEECHHHHHHHHHHHHHHSCGGGSCCCCC-----------CC
T ss_pred CeeEEEEECcEEEEecCCC-eEEEEEEEEECCCceeEEEEeEHHHHHHHHHHHHHHCcCccCCCCCCCeec-CccchHHH
Confidence 4467899999987776555 5569999999854 589999999999999999997 988 57999999999 544 6789
Q ss_pred HHHHHHHHHHHHHHHhc-CCCcCCChhhhcccCcCch
Q 001075 739 IQERCKLLDRYLKMLLQ-LPTVSGSIEVWDFLSVDSQ 774 (1163)
Q Consensus 739 lEkRr~~Le~YLq~Ll~-~p~l~~s~~v~~FL~~~~~ 774 (1163)
+|+||.+||.||+.|++ +|.+++|+.|++||...+.
T Consensus 96 ~e~Rr~~Le~yL~~Ll~~~~~i~~s~~v~~Fl~~~~~ 132 (140)
T 2iwl_X 96 AAKRKIELNSYLQSLMNASTDVAECDLVCTFFHPLLR 132 (140)
T ss_dssp CCHHHHHHHHHHHHHTTSCHHHHTSHHHHHHHSCCTT
T ss_pred HHHHHHHHHHHHHHHHhCCHhhhcCHHHHHHhCCCCC
Confidence 99999999999999999 5789999999999998764
No 16
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens}
Probab=99.70 E-value=1.7e-17 Score=168.30 Aligned_cols=109 Identities=21% Similarity=0.217 Sum_probs=94.9
Q ss_pred EEEEEeceEEEcCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccc----------cCCCCCCccccCCCC
Q 001075 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE----------YNLHLPPKHFLSTGL 734 (1163)
Q Consensus 666 l~~~I~~~~~~~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~----------~~p~LP~Kk~f~~n~ 734 (1163)
.++.|.+++....+++.|++|.|+|...++..|+|+|||+||++||++|++ ||. ..|.||+|++|+.+.
T Consensus 9 ~~v~v~~~ek~~~~~~~y~~Y~I~V~~~d~~~~~V~RRYseF~~Lh~~L~~~FP~e~~~~~~~~r~lP~lP~k~~~~~~~ 88 (149)
T 2l73_A 9 PRYPVSVQGAALVQIKRLQTFAFSVRWSDGSDTFVRRSWDEFRQLKKTLKETFPVEAGLLRRSDRVLPKLLDAPLLGRVG 88 (149)
T ss_dssp CCCEEEEEEEEEECCSSSCEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHCGGGGSSSCSSCCSSCCCCCCSCCSSCC
T ss_pred eEEEEEeeeEeecCCCceEEEEEEEEEeCCCEEEEEEehHHHHHHHHHHHHHCchhhcccccccccccCCCCCeeecccc
Confidence 356677887766667889999999998878899999999999999999997 884 146999999994335
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCC-CcCCChhhhcccCcCch
Q 001075 735 DVSVIQERCKLLDRYLKMLLQLP-TVSGSIEVWDFLSVDSQ 774 (1163)
Q Consensus 735 ~~~flEkRr~~Le~YLq~Ll~~p-~l~~s~~v~~FL~~~~~ 774 (1163)
+.+++|+|+.+||.||+.|++.| .+++|+.|++||...+.
T Consensus 89 ~~~~~e~R~~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~~~ 129 (149)
T 2l73_A 89 RTSRGLARLQLLETYSRRLLATAERVARSPTITGFFAPQPL 129 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHSHHHHHHHSCCGG
T ss_pred chHHHHHHHHHHHHHHHHHHhCCccccCCHHHHHHhCCCcc
Confidence 68899999999999999999976 49999999999999976
No 17
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
Probab=99.67 E-value=2.3e-16 Score=161.18 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=91.9
Q ss_pred ccceeEEEEEeceEEEcCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccc---------------cCCCC
Q 001075 661 DSFFKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE---------------YNLHL 724 (1163)
Q Consensus 661 ~~~~~l~~~I~~~~~~~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~---------------~~p~L 724 (1163)
+....+.|+|+++.+.++ +.+|.|+|...++..|.|+|||+||.+||.+|++ ||. ..|.|
T Consensus 14 ~~~~~~~~sI~~~~~~~~----~y~Y~I~V~~~d~~~~~V~RRYsdF~~Lh~~L~~~fP~e~g~~~~~~g~~~~~~lP~L 89 (156)
T 2v6v_A 14 DGELLVKASVESFGLEDE----KYWFLVCCELSNGKTRQLKRYYQDFYDLQVQLLDAFPAEAGKLRDAGGQWSKRIMPYI 89 (156)
T ss_dssp TTCCEEEEEEEEEEEETT----EEEEEEEEEETTSCEEEEEECHHHHHHHHHHHHHHCTTTTTCCBCTTCCBCCCCSCCC
T ss_pred CCCcceEEEEeeEEEECC----EEEEEEEEEEcCCCEEEEEEEhHHHHHHHHHHHHHcchhhcccccccccccccccCCC
Confidence 445578999999887643 4559999999778899999999999999999997 864 13789
Q ss_pred CCccccCCCCCHHHHHHHHHHHHHHHHHHhcCC-CcCCChhhhcccCcCch
Q 001075 725 PPKHFLSTGLDVSVIQERCKLLDRYLKMLLQLP-TVSGSIEVWDFLSVDSQ 774 (1163)
Q Consensus 725 P~Kk~f~~n~~~~flEkRr~~Le~YLq~Ll~~p-~l~~s~~v~~FL~~~~~ 774 (1163)
|+|.++ + +.+|+|+||.+|+.||+.|+..| .++.|+.|++||...+.
T Consensus 90 P~K~~~-~--~~~~~e~Rr~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~~~ 137 (156)
T 2v6v_A 90 PGPVPY-V--TNSITKKRKEDLNIYVADLVNLPDYISRSEMVHSLFVVLNN 137 (156)
T ss_dssp CCCCSS-C--CHHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHTTSCCSS
T ss_pred CCCccc-C--CHHHHHHHHHHHHHHHHHHHhCCccccCCHHHHHHhCCCCc
Confidence 999987 3 57999999999999999999965 69999999999999875
No 18
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=99.64 E-value=5.3e-17 Score=188.59 Aligned_cols=108 Identities=22% Similarity=0.330 Sum_probs=84.6
Q ss_pred ceeEEEEEeceEEEc--CCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCCCHHH
Q 001075 663 FFKLRCEVLGANIVK--SDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSV 738 (1163)
Q Consensus 663 ~~~l~~~I~~~~~~~--~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~~~~f 738 (1163)
...+.|.|.++..+. +|.++|++|.|.+... .|.|.||||||.+||++|.+ ||. ..|+||+|+++ ++++++|
T Consensus 39 ~~~~~i~V~dp~k~~~~~g~~~y~~Y~I~~~~~---~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~-g~~~~~f 114 (386)
T 4akv_A 39 PHPFACSVEDPTKQTKFKGIKSYISYKLTPTHA---ASPVYRRYKHFDWLYNRLLHKFTVISVPHLPEKQAT-GRFEEDF 114 (386)
T ss_dssp SSCCCEEEECC------------CCEEEEETTS---SSCEEECHHHHHHHHHHHHHHCSSSCCCCCCCCC-------CCT
T ss_pred CCCeEEEEcCceEecCCCCCcCeEEEEEEEEeC---CeEEEcCHHHHHHHHHHHHHhCCCCCCCCCCCCccc-CCCCHHH
Confidence 446889999998876 6778999999998754 69999999999999999996 887 56899999999 8999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCCChhhhcccCcCch
Q 001075 739 IQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQ 774 (1163)
Q Consensus 739 lEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~~~ 774 (1163)
||+||.+||.||+.|+.+|.+++++.|..||+.+..
T Consensus 115 ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~~~ 150 (386)
T 4akv_A 115 IEKRKRRLILWMDHMTSHPVLSQYEGFQHFLSCLDD 150 (386)
T ss_dssp TTHHHHHHHHHHHHHHTCTTGGGCHHHHHHHSCCCS
T ss_pred HHHHHHHHHHHHHHHhCCHhhhCCcHHHHHhCCCCh
Confidence 999999999999999999999999999999998743
No 19
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=99.63 E-value=7.4e-17 Score=186.29 Aligned_cols=108 Identities=21% Similarity=0.356 Sum_probs=87.0
Q ss_pred ceeEEEEEeceEEEc--CCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccc-c-CCCCCCccccCCCCCHH
Q 001075 663 FFKLRCEVLGANIVK--SDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-Y-NLHLPPKHFLSTGLDVS 737 (1163)
Q Consensus 663 ~~~l~~~I~~~~~~~--~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~-~-~p~LP~Kk~f~~n~~~~ 737 (1163)
...+.|.|.++..+. .|.++|++|.|.+... .|.|.||||||.+||..|.+ ||. . .|+||+|+++ ++++++
T Consensus 18 ~~~~~i~V~dp~k~~~~~g~~~y~~Y~I~~~~~---~~~V~RRYsdF~~L~~~L~~~~p~~~~iP~lP~K~~~-g~~~~~ 93 (366)
T 3dyt_A 18 TSTFDCVVADPRKGSKMYGLKSYIEYQLTPTNT---NRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVT-GRFEEE 93 (366)
T ss_dssp SSCCCEEEECGGGSSSCCCCCSSCEEEEEETTC---SCCEEEEHHHHHHHHHHHHHHHTTTSCCCCCC------------
T ss_pred CCCeEEEEcCceeecCCCCCcCeEEEEEEEecC---cEEEEeeHHHHHHHHHHHHHhCCCcCcCCCCcCCccc-CCCCHH
Confidence 457889999988765 5668999999998754 79999999999999999997 987 4 5899999999 899999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcCCChhhhcccCcCch
Q 001075 738 VIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQ 774 (1163)
Q Consensus 738 flEkRr~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~~~ 774 (1163)
|||+||.+||.||+.|+.+|.+++++.|..||+.+..
T Consensus 94 fie~Rr~~Le~fL~~i~~~p~l~~~~~~~~FL~~~~~ 130 (366)
T 3dyt_A 94 FIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDE 130 (366)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTGGGSHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHhCCHhhhCCcHHHHhhCCCch
Confidence 9999999999999999999999999999999998754
No 20
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A
Probab=99.56 E-value=5.7e-15 Score=151.35 Aligned_cols=108 Identities=16% Similarity=0.178 Sum_probs=91.1
Q ss_pred ceeEEEEEeceEEEcCCCcceEEEEEEEEecC----CceEEEEeccchHHHHHHHHHh---ccc-cCCCCCCccccC---
Q 001075 663 FFKLRCEVLGANIVKSDSRTFAVYAIAVTDSN----NNSWSIKRRFRHFEELHRRLKF---FQE-YNLHLPPKHFLS--- 731 (1163)
Q Consensus 663 ~~~l~~~I~~~~~~~~g~k~y~vY~I~V~~~~----~~~W~V~RRYSdF~~Lh~~L~~---~~~-~~p~LP~Kk~f~--- 731 (1163)
...+.|.|.++...++ |+.|.|.++... ...|.|.||||||.+||..|.+ ||+ ..|+||+|.+++
T Consensus 9 ~~~l~i~V~dp~~~~~----~v~Y~I~t~t~~p~f~~~~~~V~RRysdF~~L~~~L~~~~~~p~~iiPplP~K~~~~~~~ 84 (161)
T 3hpc_X 9 DPSLQIDIPDALSERD----KVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDFDGPR 84 (161)
T ss_dssp SCSEEEEEEEEEEETT----EEEEEEEEEECCTTSSSSEEEEEECHHHHHHHHHHHHHCGGGTTSCCCCCCCCCCCHHHH
T ss_pred CCeEEEEECCCeEecC----CEEEEEEEEeCCcccCCCcceEEecHHHHHHHHHHHHhhccCCccccCCCCCcccccchh
Confidence 3468999999987765 999999998752 5789999999999999999995 677 468999999872
Q ss_pred ----------CCC------------CHHHHHHHH---HHHHHHHHHHhcCCCcCCChhhhcccCcCch
Q 001075 732 ----------TGL------------DVSVIQERC---KLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQ 774 (1163)
Q Consensus 732 ----------~n~------------~~~flEkRr---~~Le~YLq~Ll~~p~l~~s~~v~~FL~~~~~ 774 (1163)
+++ +++|||+|| .+||.||+.|+.||.+++++.|..||+.+..
T Consensus 85 ~K~~~~g~~~~~~~~e~~~~~r~~~~~efie~Rrkrr~~Le~FL~ri~~HP~L~~d~~~~~FL~~~~d 152 (161)
T 3hpc_X 85 EKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQD 152 (161)
T ss_dssp HHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHCCSC
T ss_pred hhhhcccccccccchhHhhhhcccccHHHHHHHHHHHHHHHHHHHHHHcCCCcccCcHHHhhcCCCcc
Confidence 133 467999754 4599999999999999999999999999864
No 21
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens}
Probab=99.53 E-value=5.7e-15 Score=143.51 Aligned_cols=99 Identities=28% Similarity=0.385 Sum_probs=83.5
Q ss_pred eEEEEEeceEEEcCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccc-cCCCCCCccccCCCCCHHHHHHH
Q 001075 665 KLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE-YNLHLPPKHFLSTGLDVSVIQER 742 (1163)
Q Consensus 665 ~l~~~I~~~~~~~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~-~~p~LP~Kk~f~~n~~~~flEkR 742 (1163)
..+|+|.++. +. +...|.|+|+..++..|.|+|||+||.+||++|++ ||. ..|+||+|+++ + ++..-++ |
T Consensus 25 i~~~~v~~~~--k~---~~~~Yvi~V~~sd~~~~~~~rry~eF~~LH~qLkk~Fp~~~LP~fP~K~ll-~-~t~~~~e-R 96 (127)
T 2wwe_A 25 IERATILGFS--KK---SSNLYLIQVTHSNNETSLTEKSFEQFSKLHSQLQKQFASLTLPEFPHWWHL-P-FTNSDHR-R 96 (127)
T ss_dssp EEEEEEEEEE--TT---EEEEEEEEEEETTSCEEEEEECHHHHHHHHHHHHHHTTTSCCCCCCCTTSH-H-HHHCHHH-H
T ss_pred EEEEEEEEEE--ec---ccEEEEEEEEEeCCCeEEEEEEHHHHHHHHHHHHHhCccccCCCCCCcccc-C-cCHHHHH-H
Confidence 3488888773 22 34569999999988999999999999999999997 998 47999999987 3 2334455 9
Q ss_pred HHHHHHHHHHHhc-CCCcCCChhhhcccCc
Q 001075 743 CKLLDRYLKMLLQ-LPTVSGSIEVWDFLSV 771 (1163)
Q Consensus 743 r~~Le~YLq~Ll~-~p~l~~s~~v~~FL~~ 771 (1163)
|.+||.||+.|++ .|.+.+|+.|.+||..
T Consensus 97 r~~Le~Ylq~Ll~~~~~Ia~Sd~v~~Ff~~ 126 (127)
T 2wwe_A 97 FRDLNHYMEQILNVSHEVTNSDCVLSFFLS 126 (127)
T ss_dssp HHHHHHHHHHHTTSCHHHHTSHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCceeecCHHHHHHhCC
Confidence 9999999999999 6999999999999964
No 22
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=157.69 Aligned_cols=108 Identities=23% Similarity=0.356 Sum_probs=95.2
Q ss_pred eeEEEEEeceEEEcCCCcceEEEEEEEEecCCceEEEEeccchHHHHHHHHHh-ccc---------cCCCCCCccccCCC
Q 001075 664 FKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQE---------YNLHLPPKHFLSTG 733 (1163)
Q Consensus 664 ~~l~~~I~~~~~~~~g~k~y~vY~I~V~~~~~~~W~V~RRYSdF~~Lh~~L~~-~~~---------~~p~LP~Kk~f~~n 733 (1163)
..+.|+|++++.....+ +|++|.|+|...++..|.|+|||+||.+||++|++ |+. ..|.||+|+++ ++
T Consensus 22 ~~~~v~I~~~~~~~~~~-~~~~Y~i~v~~~~~~~~~v~RrYsdF~~Lh~~L~~~fp~e~g~~~~~~~lp~lP~k~~~-~~ 99 (341)
T 2dyb_A 22 VAISANIADIEEKRGFT-SHFVFVIEVKTKGGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALAXTLPTLPAKVYV-GV 99 (341)
T ss_dssp SEEEEEEEEEEEEESSS-EEEEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHTCC---------CCCCCCCCCCC-SC
T ss_pred CcEEEEECCeEEecCCC-cEEEEEEEEEEcCCcEEEEEeehHHHHHHHHHHHHHCchhhccccccccccCCCCcccc-Cc
Confidence 36899999998776544 58899999998768899999999999999999997 874 25899999999 65
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCC-cCCChhhhcccCcCch
Q 001075 734 LDVSVIQERCKLLDRYLKMLLQLPT-VSGSIEVWDFLSVDSQ 774 (1163)
Q Consensus 734 ~~~~flEkRr~~Le~YLq~Ll~~p~-l~~s~~v~~FL~~~~~ 774 (1163)
..+|+|+|+..|+.||+.|+.+|. ++.|+.|+.||.....
T Consensus 100 -~~~~~e~R~~~Le~yl~~ll~lp~~i~~~~~v~~Ff~~~~~ 140 (341)
T 2dyb_A 100 -KQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPY 140 (341)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHSCHHHHTCHHHHHHHSCCHH
T ss_pred -cHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhccc
Confidence 778999999999999999999886 9999999999999876
No 23
>1cmz_A Protein (GAIP (G-alpha interacting) protein); RGS, regulator of G protein, signaling protein regulation; NMR {Homo sapiens} SCOP: a.91.1.1
Probab=46.61 E-value=1.8 Score=42.97 Aligned_cols=59 Identities=7% Similarity=0.016 Sum_probs=40.2
Q ss_pred ChhHHHHHHhhhcccccccccchhhhcccccceeccccccccccccccccccccCcccccCCcccccccCCCCCCccccc
Q 001075 393 EWPEKLDLISRRKTRALAPEHFDNMWTKGRNYKRKEGENWVNEQHSVLKSATADGSKAMEKPKEKNTMTNVKPSMTRTTS 472 (1163)
Q Consensus 393 ~~~~~Ld~~~~r~~q~l~pE~l~~~w~~g~~yk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1163)
....+.+|+.+. ...|+ ..||..+++||+.... ...+..|
T Consensus 33 ~~~~F~~Fl~~e----~s~En-l~Fw~~ve~~k~~~~~-----------------------------------~~~~~~a 72 (152)
T 1cmz_A 33 GRSVFRAFLRTE----YSEEN-MLFWLACEELKAEANQ-----------------------------------HVVDEKA 72 (152)
T ss_dssp HHHHHHHHHHHH----TCCHH-HHHHHHHHHGGGTCCS-----------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHh----cChhh-HHHHHHHHHHHhcCCH-----------------------------------HHHHHHH
Confidence 466777777653 22333 4799999999876211 1134557
Q ss_pred cccccccccCCCCCccccc
Q 001075 473 DRYSDKLKIDNSFPHADWK 491 (1163)
Q Consensus 473 ~~~~~qyl~~~~~~~~~~~ 491 (1163)
..||+.|+...+...+.++
T Consensus 73 ~~Iy~~yi~~~s~~evni~ 91 (152)
T 1cmz_A 73 RLIYEDYVSILSPKEVSLD 91 (152)
T ss_dssp HHHHHHTTTCSSSCCCSCC
T ss_pred HHHHHHHcCCCCCceeeCC
Confidence 8899999999887777765
No 24
>2crp_A RGS5, regulator of G-protein signaling 5; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.53 E-value=2.2 Score=42.42 Aligned_cols=80 Identities=5% Similarity=0.091 Sum_probs=47.6
Q ss_pred ChhHHHHHHhhhcccccccccchhhhcccccceeccccccccccccccccccccCcccccCCcccccccCCCCCCccccc
Q 001075 393 EWPEKLDLISRRKTRALAPEHFDNMWTKGRNYKRKEGENWVNEQHSVLKSATADGSKAMEKPKEKNTMTNVKPSMTRTTS 472 (1163)
Q Consensus 393 ~~~~~Ld~~~~r~~q~l~pE~l~~~w~~g~~yk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1163)
....+.+|+.+.. ..|+ ..||..+++||..... ......+
T Consensus 38 g~~~F~~Fl~~e~----s~En-l~Fw~~ve~yk~~~~~-----------------------------------~~~~~~a 77 (150)
T 2crp_A 38 GLASFKSFLKSEF----SEEN-LEFWIACEDYKKIKSP-----------------------------------AKMAEKA 77 (150)
T ss_dssp HHHHHHHHHHHTT----CHHH-HHHHHHHHHHHTCCCT-----------------------------------THHHHHH
T ss_pred HHHHHHHHHHHhc----CHHH-HHHHHHHHHHHccCCH-----------------------------------HHHHHHH
Confidence 4556777776532 2333 5799999999876210 1134567
Q ss_pred cccccccccCCCCCccccc--cccccccccCCCCchhhhccc
Q 001075 473 DRYSDKLKIDNSFPHADWK--KSNGLVVASYPEDDEEVELGS 512 (1163)
Q Consensus 473 ~~~~~qyl~~~~~~~~~~~--~~~~l~~~l~~~~~~~~~~~~ 512 (1163)
..||+.|+...+...+.++ ....+...+....+..|+..+
T Consensus 78 ~~Iy~~yi~~~s~~evNi~~~~r~~i~~~l~~p~~~~Fd~aq 119 (150)
T 2crp_A 78 KQIYEEFIQTEAPKEVNIDHFTKDITMKNLVEPSLSSFDMAQ 119 (150)
T ss_dssp HHHHHHTSSTTCSSCCSCCHHHHHHHHHTTSSCSSGGGHHHH
T ss_pred HHHHHHHccCCCCccCCCCHHHHHHHHHHHhCCCHHHHHHHH
Confidence 8899999999887777766 223344444333334444433
No 25
>2dlv_A RGS18, regulator of G-protein signaling 18; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.92 E-value=1.5 Score=42.95 Aligned_cols=59 Identities=8% Similarity=0.188 Sum_probs=40.3
Q ss_pred ChhHHHHHHhhhcccccccccchhhhcccccceeccccccccccccccccccccCcccccCCcccccccCCCCCCccccc
Q 001075 393 EWPEKLDLISRRKTRALAPEHFDNMWTKGRNYKRKEGENWVNEQHSVLKSATADGSKAMEKPKEKNTMTNVKPSMTRTTS 472 (1163)
Q Consensus 393 ~~~~~Ld~~~~r~~q~l~pE~l~~~w~~g~~yk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1163)
....+.+|+.+.. ..|+ ..||..+++||..... ......|
T Consensus 28 ~~~~F~~Fl~~e~----s~en-l~Fw~~ve~~k~~~~~-----------------------------------~~~~~~a 67 (140)
T 2dlv_A 28 GLEAFTRFLKTEF----SEEN-IEFWIACEDFKKSKGP-----------------------------------QQIHLKA 67 (140)
T ss_dssp HHHHHHHHHHHTT----CTHH-HHHHHHHHHHTTCCHH-----------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHhC----CHHH-HHHHHHHHHHhccCCH-----------------------------------HHHHHHH
Confidence 4567777776532 2333 5799999999876210 0134457
Q ss_pred cccccccccCCCCCccccc
Q 001075 473 DRYSDKLKIDNSFPHADWK 491 (1163)
Q Consensus 473 ~~~~~qyl~~~~~~~~~~~ 491 (1163)
..||+.|+...+...++++
T Consensus 68 ~~Iy~~yi~~~s~~evni~ 86 (140)
T 2dlv_A 68 KAIYEKFIQTDAPKEVNLD 86 (140)
T ss_dssp HHHHHHTTSSSSTTCCCCC
T ss_pred HHHHHHHCCCCCccccCCc
Confidence 8899999999887777766
No 26
>1fqi_A RGS9, regulator of G-protein signaling 9; phototransduction, ROD, GAP, signaling protein; 1.94A {Bos taurus} SCOP: a.91.1.1 PDB: 1fqj_B* 1fqk_B*
Probab=44.42 E-value=2.1 Score=42.38 Aligned_cols=58 Identities=5% Similarity=0.106 Sum_probs=39.6
Q ss_pred ChhHHHHHHhhhcccccccccchhhhcccccceeccccccccccccccccccccCcccccCCcccccccCCCCCCccccc
Q 001075 393 EWPEKLDLISRRKTRALAPEHFDNMWTKGRNYKRKEGENWVNEQHSVLKSATADGSKAMEKPKEKNTMTNVKPSMTRTTS 472 (1163)
Q Consensus 393 ~~~~~Ld~~~~r~~q~l~pE~l~~~w~~g~~yk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1163)
....+.+|+.+. ...|+ ..||..+++||+...+ .++..|
T Consensus 34 g~~~F~~FL~~e----~~~en-l~Fw~~ve~~k~~~~~------------------------------------~~~~~a 72 (147)
T 1fqi_A 34 GRQSFQHFLRKE----FSGEN-LGFWEACEDLKYGDQS------------------------------------KVKEKA 72 (147)
T ss_dssp HHHHHHHHHHHT----TCTHH-HHHHHHHHHHHTSCGG------------------------------------GHHHHH
T ss_pred HHHHHHHHHHHh----cCHHH-HHHHHHHHHHhcCCHH------------------------------------HHHHHH
Confidence 456677777653 22333 4689999999875211 134467
Q ss_pred cccccccccCCCCCccccc
Q 001075 473 DRYSDKLKIDNSFPHADWK 491 (1163)
Q Consensus 473 ~~~~~qyl~~~~~~~~~~~ 491 (1163)
..||+.|+...+...+.++
T Consensus 73 ~~Iy~~yi~~~s~~evni~ 91 (147)
T 1fqi_A 73 EEIYKLFLAPGARRWINID 91 (147)
T ss_dssp HHHHHHHTSTTCTTCCCCC
T ss_pred HHHHHHHcCCCCCcccCCC
Confidence 8899999999887777665
No 27
>2bv1_A Regulator of G-protein signalling 1; RGS1, RGS, structural genomics, struct genomics consortium, B-cell activation, phosphorylation; 2.0A {Homo sapiens} PDB: 2gtp_C*
Probab=43.60 E-value=2 Score=42.41 Aligned_cols=58 Identities=9% Similarity=0.194 Sum_probs=40.1
Q ss_pred ChhHHHHHHhhhcccccccccchhhhcccccceeccccccccccccccccccccCcccccCCcccccccCCCCCCccccc
Q 001075 393 EWPEKLDLISRRKTRALAPEHFDNMWTKGRNYKRKEGENWVNEQHSVLKSATADGSKAMEKPKEKNTMTNVKPSMTRTTS 472 (1163)
Q Consensus 393 ~~~~~Ld~~~~r~~q~l~pE~l~~~w~~g~~yk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1163)
....+.+|+.+. ...|+ ..||..+++||+...+ .....|
T Consensus 35 g~~~F~~FL~~e----~s~En-l~Fw~~ve~yk~~~~~------------------------------------~~~~~a 73 (145)
T 2bv1_A 35 GQNVFGSFLKSE----FSEEN-IEFWLACEDYKKTESD------------------------------------LLPCKA 73 (145)
T ss_dssp HHHHHHHHHHHT----TCTHH-HHHHHHHHHHHTSCGG------------------------------------GHHHHH
T ss_pred HHHHHHHHHHHh----cCHHH-HHHHHHHHHHhccCcH------------------------------------HHHHHH
Confidence 456677777553 22333 5799999999876211 034557
Q ss_pred cccccccccCCCCCccccc
Q 001075 473 DRYSDKLKIDNSFPHADWK 491 (1163)
Q Consensus 473 ~~~~~qyl~~~~~~~~~~~ 491 (1163)
..||+.|+...+...+.++
T Consensus 74 ~~Iy~~yi~~~s~~evni~ 92 (145)
T 2bv1_A 74 EEIYKAFVHSDAAKQINID 92 (145)
T ss_dssp HHHHHHHTSTTCTTCCCCC
T ss_pred HHHHHHHCCCCCCcccCcC
Confidence 8899999999887777766
No 28
>2jm5_A RGS18, regulator of G-protein signaling 18; signaling protein, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens} SCOP: a.91.1.1 PDB: 2owi_A
Probab=43.56 E-value=1.8 Score=43.02 Aligned_cols=59 Identities=8% Similarity=0.188 Sum_probs=40.6
Q ss_pred ChhHHHHHHhhhcccccccccchhhhcccccceeccccccccccccccccccccCcccccCCcccccccCCCCCCccccc
Q 001075 393 EWPEKLDLISRRKTRALAPEHFDNMWTKGRNYKRKEGENWVNEQHSVLKSATADGSKAMEKPKEKNTMTNVKPSMTRTTS 472 (1163)
Q Consensus 393 ~~~~~Ld~~~~r~~q~l~pE~l~~~w~~g~~yk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1163)
....+.+|+.+.. ..|+ ..||..+++||..... ......|
T Consensus 24 g~~~F~~FL~~e~----s~En-l~Fw~~ve~yk~~~~~-----------------------------------~~~~~~a 63 (151)
T 2jm5_A 24 GLEAFTRFLKTEF----SEEN-IEFWIACEDFKKSKGP-----------------------------------QQIHLKA 63 (151)
T ss_dssp HHHHHHHHHHHTT----CTTT-HHHHHHHHHHHTCCCH-----------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHhC----CHHH-HHHHHHHHHHhccCCH-----------------------------------HHHHHHH
Confidence 4667777776532 2344 5799999999876210 0134557
Q ss_pred cccccccccCCCCCccccc
Q 001075 473 DRYSDKLKIDNSFPHADWK 491 (1163)
Q Consensus 473 ~~~~~qyl~~~~~~~~~~~ 491 (1163)
..||+.|+...+...+.++
T Consensus 64 ~~Iy~~yi~~~s~~evNi~ 82 (151)
T 2jm5_A 64 KAIYEKFIQTDAPKEVNLD 82 (151)
T ss_dssp HHHHHHTTCSSSSSCCCCC
T ss_pred HHHHHHHccCcchhhcCCC
Confidence 8899999999887777766
No 29
>1agr_E RGS4; GI-alpha-1, hydrolase, signal transduction, complex (signal transduction/regulator), GTP-binding, GTPase activating protein; HET: GDP CIT; 2.80A {Rattus norvegicus} SCOP: a.91.1.1 PDB: 1ezt_A 1ezy_A
Probab=43.11 E-value=2.5 Score=44.58 Aligned_cols=59 Identities=8% Similarity=0.163 Sum_probs=40.4
Q ss_pred ChhHHHHHHhhhcccccccccchhhhcccccceeccccccccccccccccccccCcccccCCcccccccCCCCCCccccc
Q 001075 393 EWPEKLDLISRRKTRALAPEHFDNMWTKGRNYKRKEGENWVNEQHSVLKSATADGSKAMEKPKEKNTMTNVKPSMTRTTS 472 (1163)
Q Consensus 393 ~~~~~Ld~~~~r~~q~l~pE~l~~~w~~g~~yk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1163)
....|.+|+.+.. ..|+ ..||..+++||..... ......|
T Consensus 72 g~~~F~~FL~~e~----s~En-L~Fw~ave~yk~~~~~-----------------------------------~~~~~~A 111 (205)
T 1agr_E 72 GLAAFKAFLKSEY----SEEN-IDFWISCEEYKKIKSP-----------------------------------SKLSPKA 111 (205)
T ss_dssp HHHHHHHHHHHTT----CTHH-HHHHHHHHHHHHCCCT-----------------------------------TTHHHHH
T ss_pred HHHHHHHHHHHcC----CHHH-HHHHHHHHHHhccCCH-----------------------------------HHHHHHH
Confidence 4566777776532 2233 4799999999876210 1144567
Q ss_pred cccccccccCCCCCccccc
Q 001075 473 DRYSDKLKIDNSFPHADWK 491 (1163)
Q Consensus 473 ~~~~~qyl~~~~~~~~~~~ 491 (1163)
..||+.|+...+...++++
T Consensus 112 ~~Iy~~YI~~~Sp~evNI~ 130 (205)
T 1agr_E 112 KKIYNEFISVQATKEVNLD 130 (205)
T ss_dssp HHHHHHHTSTTCTTCCCCC
T ss_pred HHHHHHHCCCCCchhhhcc
Confidence 8899999999887777766
No 30
>2a72_A Regulator of G-protein signalling 7; human RGS7, regulator of G-protein signaling 7, GTPase-activ proteins (GAP), structural genomics; 2.00A {Homo sapiens} PDB: 2d9j_A 2es0_A
Probab=41.58 E-value=1.9 Score=42.68 Aligned_cols=58 Identities=7% Similarity=0.097 Sum_probs=39.9
Q ss_pred ChhHHHHHHhhhcccccccccchhhhcccccceeccccccccccccccccccccCcccccCCcccccccCCCCCCccccc
Q 001075 393 EWPEKLDLISRRKTRALAPEHFDNMWTKGRNYKRKEGENWVNEQHSVLKSATADGSKAMEKPKEKNTMTNVKPSMTRTTS 472 (1163)
Q Consensus 393 ~~~~~Ld~~~~r~~q~l~pE~l~~~w~~g~~yk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1163)
....+.+|+.+.. ..|+ ..||..+++||....+ .....|
T Consensus 26 g~~~F~~Fl~~e~----~~En-l~Fw~~ve~~k~~~~~------------------------------------~~~~~a 64 (146)
T 2a72_A 26 GREQFLKFLESEF----SSEN-LRFWLAVEDLKKRPIK------------------------------------EVPSRV 64 (146)
T ss_dssp HHHHHHHHHHHTT----CCHH-HHHHHHHHHHTTSCGG------------------------------------GHHHHH
T ss_pred HHHHHHHHHHHhc----CHHH-HHHHHHHHHHHhcCHH------------------------------------HHHHHH
Confidence 4567777776532 2333 5799999999876111 123457
Q ss_pred cccccccccCCCCCccccc
Q 001075 473 DRYSDKLKIDNSFPHADWK 491 (1163)
Q Consensus 473 ~~~~~qyl~~~~~~~~~~~ 491 (1163)
..||+.|+...+...+.++
T Consensus 65 ~~Iy~~yi~~~s~~evNi~ 83 (146)
T 2a72_A 65 QEIWQEFLAPGAPSAINLD 83 (146)
T ss_dssp HHHHHHHTSTTCTTCCCCC
T ss_pred HHHHHHHcCCCCcccCCCC
Confidence 7899999999887777766
No 31
>1zv4_X RGS17, regulator of G-protein signaling 17; human RGSZ2, human RGS17(Z2), regulator of G-protein signali opioid receptor interacting protein; 2.40A {Homo sapiens}
Probab=40.36 E-value=1.9 Score=43.45 Aligned_cols=59 Identities=7% Similarity=0.039 Sum_probs=39.1
Q ss_pred ChhHHHHHHhhhcccccccccchhhhcccccceeccccccccccccccccccccCcccccCCcccccccCCCCCCccccc
Q 001075 393 EWPEKLDLISRRKTRALAPEHFDNMWTKGRNYKRKEGENWVNEQHSVLKSATADGSKAMEKPKEKNTMTNVKPSMTRTTS 472 (1163)
Q Consensus 393 ~~~~~Ld~~~~r~~q~l~pE~l~~~w~~g~~yk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1163)
....|.+|+.+.. ..|+ ..||..+++||+.... ...+..|
T Consensus 46 g~~~F~~FL~~e~----s~En-l~Fw~~ve~yk~~~~~-----------------------------------~~~~~~a 85 (158)
T 1zv4_X 46 GRNLFREFLRTEY----SEEN-LLFWLACEDLKKEQNK-----------------------------------KVIEEKA 85 (158)
T ss_dssp HHHHHHHHHHHTT----CHHH-HHHHHHHHHHHHCCSH-----------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHcc----CHhH-HHHHHHHHHHHhcCCH-----------------------------------HHHHHHH
Confidence 4566777776532 2333 5799999999876211 0134457
Q ss_pred cccccccccCCCCCccccc
Q 001075 473 DRYSDKLKIDNSFPHADWK 491 (1163)
Q Consensus 473 ~~~~~qyl~~~~~~~~~~~ 491 (1163)
..||+.|+...+...++++
T Consensus 86 ~~Iy~~yi~~~s~~evNi~ 104 (158)
T 1zv4_X 86 RMIYEDYISILSPKEVSLD 104 (158)
T ss_dssp HHHHHHHTCCC-CCCCCCC
T ss_pred HHHHHHHCCCCCCceeecC
Confidence 8899999999887777765
No 32
>2oj4_A RGS3, regulator of G-protein signaling 3, RGP3; RGS domain, signaling protein inhibitor; 2.30A {Homo sapiens}
Probab=39.87 E-value=1.9 Score=41.24 Aligned_cols=59 Identities=7% Similarity=0.126 Sum_probs=39.9
Q ss_pred ChhHHHHHHhhhcccccccccchhhhcccccceeccccccccccccccccccccCcccccCCcccccccCCCCCCccccc
Q 001075 393 EWPEKLDLISRRKTRALAPEHFDNMWTKGRNYKRKEGENWVNEQHSVLKSATADGSKAMEKPKEKNTMTNVKPSMTRTTS 472 (1163)
Q Consensus 393 ~~~~~Ld~~~~r~~q~l~pE~l~~~w~~g~~yk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1163)
....+.+++.+.. ..|+ ..||..+++||+.... ......|
T Consensus 20 g~~~F~~Fl~~e~----~~en-l~Fw~~ve~~k~~~~~-----------------------------------~~~~~~a 59 (127)
T 2oj4_A 20 GLAVFQAFLRTEF----SEEN-LEFWLACEDFKKVKSQ-----------------------------------SKMASKA 59 (127)
T ss_dssp HHHHHHHHHHHTT----CHHH-HHHHHHHHHHTTCCCH-----------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHcC----CHHH-HHHHHHHHHHhcCCCH-----------------------------------HHHHHHH
Confidence 4567777776532 2333 5799999999875110 0134457
Q ss_pred cccccccccCCCCCccccc
Q 001075 473 DRYSDKLKIDNSFPHADWK 491 (1163)
Q Consensus 473 ~~~~~qyl~~~~~~~~~~~ 491 (1163)
..||+.|+...+...+.++
T Consensus 60 ~~I~~~yi~~~s~~evni~ 78 (127)
T 2oj4_A 60 KKIFAEYIAIQACKEVNLD 78 (127)
T ss_dssp HHHHHHHTSTTCTTCCCCC
T ss_pred HHHHHHHccCCCCcCccCC
Confidence 8899999999887777766
No 33
>2ihd_A RGS8, regulator of G-protein signaling 8; signaling protein, structural genomics, structura genomics consortium, SGC, signaling protein; 1.70A {Homo sapiens} PDB: 2ode_B* 2bt2_A
Probab=37.74 E-value=2.3 Score=42.66 Aligned_cols=59 Identities=7% Similarity=0.099 Sum_probs=40.5
Q ss_pred ChhHHHHHHhhhcccccccccchhhhcccccceeccccccccccccccccccccCcccccCCcccccccCCCCCCccccc
Q 001075 393 EWPEKLDLISRRKTRALAPEHFDNMWTKGRNYKRKEGENWVNEQHSVLKSATADGSKAMEKPKEKNTMTNVKPSMTRTTS 472 (1163)
Q Consensus 393 ~~~~~Ld~~~~r~~q~l~pE~l~~~w~~g~~yk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1163)
....+.+|+.+.. ..|+ ..||..+++||..... ......|
T Consensus 48 g~~~F~~FL~~e~----s~En-l~Fw~~ve~yk~~~~~-----------------------------------~~~~~~a 87 (155)
T 2ihd_A 48 GVAAFRAFLKTEF----SEEN-LEFWLACEEFKKTRST-----------------------------------AKLVSKA 87 (155)
T ss_dssp HHHHHHHHHHHTT----CTHH-HHHHHHHHHHTTCCCH-----------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHhC----CHHH-HHHHHHHHHHhccCCH-----------------------------------HHHHHHH
Confidence 4667777776532 2233 5799999999876210 0134557
Q ss_pred cccccccccCCCCCccccc
Q 001075 473 DRYSDKLKIDNSFPHADWK 491 (1163)
Q Consensus 473 ~~~~~qyl~~~~~~~~~~~ 491 (1163)
..||+.|+...+...+.++
T Consensus 88 ~~Iy~~yi~~~s~~evNI~ 106 (155)
T 2ihd_A 88 HRIFEEFVDVQAPREVNID 106 (155)
T ss_dssp HHHHHHHTSTTCTTCCCCC
T ss_pred HHHHHHHCcCCCccccCCC
Confidence 8899999999887777766
No 34
>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase activating protein, heterotrimeric G-protein, lipoprotein, palmitate, phosphoprotein; 1.89A {Mus musculus} PDB: 3c7k_B* 2ik8_B*
Probab=37.64 E-value=1.5 Score=42.85 Aligned_cols=59 Identities=7% Similarity=0.131 Sum_probs=40.0
Q ss_pred ChhHHHHHHhhhcccccccccchhhhcccccceeccccccccccccccccccccCcccccCCcccccccCCCCCCccccc
Q 001075 393 EWPEKLDLISRRKTRALAPEHFDNMWTKGRNYKRKEGENWVNEQHSVLKSATADGSKAMEKPKEKNTMTNVKPSMTRTTS 472 (1163)
Q Consensus 393 ~~~~~Ld~~~~r~~q~l~pE~l~~~w~~g~~yk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1163)
....+.+|+.+. ...|+ ..||..+++||+.... ......|
T Consensus 31 g~~~F~~Fl~~e----~s~En-l~Fw~~ve~~k~~~~~-----------------------------------~~~~~~a 70 (137)
T 3c7l_A 31 GVAAFHAFLKTE----FSEEN-LEFWLACEEFKKIRSA-----------------------------------TKLASRA 70 (137)
T ss_dssp HHHHHHHHHHTT----TCHHH-HHHHHHHHHHTTCCCH-----------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHh----CCHHH-HHHHHHHHHHhccCCH-----------------------------------HHHHHHH
Confidence 456677777653 22333 5799999999876210 0134557
Q ss_pred cccccccccCCCCCccccc
Q 001075 473 DRYSDKLKIDNSFPHADWK 491 (1163)
Q Consensus 473 ~~~~~qyl~~~~~~~~~~~ 491 (1163)
..||+.|+...+...+.++
T Consensus 71 ~~Iy~~yi~~~s~~evNi~ 89 (137)
T 3c7l_A 71 HHIFDEYIRSEAPKEVNID 89 (137)
T ss_dssp HHHHHHHTSTTCTTCCCCC
T ss_pred HHHHHHHCCCCCCccCCCC
Confidence 8899999999887777766
No 35
>2dlr_A RGS10, regulator of G-protein signaling 10; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.21 E-value=2.9 Score=41.45 Aligned_cols=59 Identities=5% Similarity=0.133 Sum_probs=40.0
Q ss_pred ChhHHHHHHhhhcccccccccchhhhcccccceeccccccccccccccccccccCcccccCCcccccccCCCCCCccccc
Q 001075 393 EWPEKLDLISRRKTRALAPEHFDNMWTKGRNYKRKEGENWVNEQHSVLKSATADGSKAMEKPKEKNTMTNVKPSMTRTTS 472 (1163)
Q Consensus 393 ~~~~~Ld~~~~r~~q~l~pE~l~~~w~~g~~yk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1163)
....|.+|+.+.. ..|+ ..||..+++||+.... ......|
T Consensus 28 g~~~F~~FL~~e~----~~En-l~Fw~~ve~yk~~~~~-----------------------------------~~~~~~a 67 (149)
T 2dlr_A 28 GVKRFREFLKKEF----SEEN-VLFWLACEDFKKMQDK-----------------------------------TQMQEKA 67 (149)
T ss_dssp HHHHHHHHHHHHT----CTHH-HHHHHHHHHHHHHCCH-----------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHhc----CHHH-HHHHHHHHHHhccCCH-----------------------------------HHHHHHH
Confidence 4567777776533 2233 4799999999876211 0134457
Q ss_pred cccccccccCCCCCccccc
Q 001075 473 DRYSDKLKIDNSFPHADWK 491 (1163)
Q Consensus 473 ~~~~~qyl~~~~~~~~~~~ 491 (1163)
..||++|+...+...+.++
T Consensus 68 ~~Iy~~yi~~~s~~evNi~ 86 (149)
T 2dlr_A 68 KEIYMTFLSSKASSQVNVE 86 (149)
T ss_dssp HHHHTTTSSTTCSSCCCCS
T ss_pred HHHHHHHcCCCCCccccCC
Confidence 7899999999887776665
No 36
>2ihb_B Regulator of G-protein signalling 10, guanine nucleotide-binding protein G(K) subunit A; RGS, heterotrimeric G protein, signall complex; HET: GDP; 2.71A {Homo sapiens} PDB: 2i59_A
Probab=34.79 E-value=3.2 Score=41.35 Aligned_cols=59 Identities=5% Similarity=0.135 Sum_probs=40.0
Q ss_pred ChhHHHHHHhhhcccccccccchhhhcccccceeccccccccccccccccccccCcccccCCcccccccCCCCCCccccc
Q 001075 393 EWPEKLDLISRRKTRALAPEHFDNMWTKGRNYKRKEGENWVNEQHSVLKSATADGSKAMEKPKEKNTMTNVKPSMTRTTS 472 (1163)
Q Consensus 393 ~~~~~Ld~~~~r~~q~l~pE~l~~~w~~g~~yk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1163)
....+.+|+.+... .|+ ..||..+++||..... ......|
T Consensus 44 g~~~F~~FL~~e~~----~En-l~Fw~~ve~yk~~~~~-----------------------------------~~~~~~a 83 (153)
T 2ihb_B 44 GVKRFREFLKKEFS----EEN-VLFWLACEDFKKMQDK-----------------------------------TQMQEKA 83 (153)
T ss_dssp HHHHHHHHHHHTTC----HHH-HHHHHHHHHHHHCCCH-----------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHhcC----HHH-HHHHHHHHHHcCCCCH-----------------------------------HHHHHHH
Confidence 45667777765322 232 5799999999876211 0134457
Q ss_pred cccccccccCCCCCccccc
Q 001075 473 DRYSDKLKIDNSFPHADWK 491 (1163)
Q Consensus 473 ~~~~~qyl~~~~~~~~~~~ 491 (1163)
..||+.|+...+...+.++
T Consensus 84 ~~Iy~~yi~~~s~~evNi~ 102 (153)
T 2ihb_B 84 KEIYMTFLSSKASSQVNVE 102 (153)
T ss_dssp HHHHHHHTSTTCTTCCCCC
T ss_pred HHHHHHHcCCCCCccCCCC
Confidence 8899999999887777766
No 37
>2af0_A Regulator of G-protein signaling 2; helix, structural genomics, structural genomics consortium, SGC, signaling protein; 2.30A {Homo sapiens} PDB: 2v4z_B*
Probab=31.36 E-value=2.8 Score=41.37 Aligned_cols=59 Identities=5% Similarity=0.113 Sum_probs=40.1
Q ss_pred ChhHHHHHHhhhcccccccccchhhhcccccceeccccccccccccccccccccCcccccCCcccccccCCCCCCccccc
Q 001075 393 EWPEKLDLISRRKTRALAPEHFDNMWTKGRNYKRKEGENWVNEQHSVLKSATADGSKAMEKPKEKNTMTNVKPSMTRTTS 472 (1163)
Q Consensus 393 ~~~~~Ld~~~~r~~q~l~pE~l~~~w~~g~~yk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1163)
....+.+|+.+.. ..|+ ..||..+++||+.... ......+
T Consensus 36 g~~~F~~Fl~~e~----s~En-l~Fw~~ve~~k~~~~~-----------------------------------~~~~~~a 75 (146)
T 2af0_A 36 GLAAFRAFLKSEF----CEEN-IEFWLACEDFKKTKSP-----------------------------------QKLSSKA 75 (146)
T ss_dssp HHHHHHHHHHHTT----CTHH-HHHHHHHHHHHTCCCH-----------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHhc----CHHH-HHHHHHHHHHhccCCH-----------------------------------HHHHHHH
Confidence 4567777776532 2333 5799999999876210 0134557
Q ss_pred cccccccccCCCCCccccc
Q 001075 473 DRYSDKLKIDNSFPHADWK 491 (1163)
Q Consensus 473 ~~~~~qyl~~~~~~~~~~~ 491 (1163)
..||+.|+...+...+.++
T Consensus 76 ~~Iy~~yi~~~s~~evNi~ 94 (146)
T 2af0_A 76 RKIYTDFIEKEAPKEINID 94 (146)
T ss_dssp HHHHHHHTSTTCTTCCCCC
T ss_pred HHHHHHHCcCCCCcccCcC
Confidence 8899999999887777766
No 38
>1dk8_A Axin; alpha-helix, PI-helix, signaling protein; HET: SO4; 1.57A {Homo sapiens} SCOP: a.91.1.1 PDB: 1emu_A
Probab=31.34 E-value=0.36 Score=47.79 Aligned_cols=63 Identities=8% Similarity=0.059 Sum_probs=38.8
Q ss_pred ChhHHHHHHhhhcccccccccchhhhcccccceeccccccccccccccccccccCcccccCCcccccccCCCCCCccccc
Q 001075 393 EWPEKLDLISRRKTRALAPEHFDNMWTKGRNYKRKEGENWVNEQHSVLKSATADGSKAMEKPKEKNTMTNVKPSMTRTTS 472 (1163)
Q Consensus 393 ~~~~~Ld~~~~r~~q~l~pE~l~~~w~~g~~yk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1163)
....+.+|+.+... .|+ ..||+.+++||+.-..+ .. .......|
T Consensus 25 g~~~F~~FL~~e~~----~en-l~Fw~~ve~~k~~~~~~-----------------------~~--------~~~~~~~a 68 (147)
T 1dk8_A 25 GISLFRTFLKQEGC----ADL-LDFWFACTGFRKLEPCD-----------------------SN--------EEKRLKLA 68 (147)
T ss_dssp HHHHHHHHHHTTTC----HHH-HHHHHHHHHHHHCCCCT-----------------------TS--------HHHHHHHH
T ss_pred HHHHHHHHHHHccC----HHH-HHHHHHHHHHHhhhccc-----------------------CC--------HHHHHHHH
Confidence 56678888865322 223 57999999999761100 00 01245568
Q ss_pred cccccccc-cCCCCCccccc
Q 001075 473 DRYSDKLK-IDNSFPHADWK 491 (1163)
Q Consensus 473 ~~~~~qyl-~~~~~~~~~~~ 491 (1163)
..||+.|+ ...+...+.++
T Consensus 69 ~~Iy~~yi~~~~s~~~vni~ 88 (147)
T 1dk8_A 69 RAIYRKYILDNNGIVSRQTK 88 (147)
T ss_dssp HHHHHHHTSCTTSHHHHHSC
T ss_pred HHHHHHHhCCccCCCCCCCC
Confidence 88999999 66555455554
No 39
>2jnu_A RGS14, regulator of G-protein signaling 14; regulator of G-protein signalling domain, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=24.10 E-value=4.5 Score=40.29 Aligned_cols=61 Identities=3% Similarity=0.172 Sum_probs=40.3
Q ss_pred ChhHHHHHHhhhcccccccccchhhhcccccceeccccccccccccccccccccCcccccCCcccccccCCCCCCccccc
Q 001075 393 EWPEKLDLISRRKTRALAPEHFDNMWTKGRNYKRKEGENWVNEQHSVLKSATADGSKAMEKPKEKNTMTNVKPSMTRTTS 472 (1163)
Q Consensus 393 ~~~~~Ld~~~~r~~q~l~pE~l~~~w~~g~~yk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1163)
....|.+|+.+. ...|+ ..||..+++||+....+ .......|
T Consensus 24 g~~~F~~FL~~e----~~~En-l~Fw~~ve~~k~~~~~~---------------------------------~~~~~~~a 65 (154)
T 2jnu_A 24 GLAYFTEFLKKE----FSAEN-VTFWKACERFQQIPASD---------------------------------TQQLAQEA 65 (154)
T ss_dssp HHHHHHHHTTTS----SCTHH-HHHHHHHHHHHHSCTTC---------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHh----cCHHH-HHHHHHHHHHhcccccc---------------------------------HHHHHHHH
Confidence 456777777543 22333 57999999998762110 01244567
Q ss_pred cccccccccCCCCCccccc
Q 001075 473 DRYSDKLKIDNSFPHADWK 491 (1163)
Q Consensus 473 ~~~~~qyl~~~~~~~~~~~ 491 (1163)
..||+.|+...+...+.++
T Consensus 66 ~~Iy~~yi~~~s~~evni~ 84 (154)
T 2jnu_A 66 RNIYQEFLSSQALSPVNID 84 (154)
T ss_dssp HHHHHHHTSTTCSSCCCSC
T ss_pred HHHHHHHcCCCCCcccCCc
Confidence 8899999999887777665
No 40
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=20.22 E-value=11 Score=43.99 Aligned_cols=58 Identities=5% Similarity=0.089 Sum_probs=39.9
Q ss_pred ChhHHHHHHhhhcccccccccchhhhcccccceeccccccccccccccccccccCcccccCCcccccccCCCCCCccccc
Q 001075 393 EWPEKLDLISRRKTRALAPEHFDNMWTKGRNYKRKEGENWVNEQHSVLKSATADGSKAMEKPKEKNTMTNVKPSMTRTTS 472 (1163)
Q Consensus 393 ~~~~~Ld~~~~r~~q~l~pE~l~~~w~~g~~yk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1163)
....|.+|+.+. ...|+ ..||..+++||....+ .+...|
T Consensus 311 g~~~F~~FL~~e----~s~En-L~Fwlave~fk~~~~~------------------------------------~~~~~A 349 (424)
T 2pbi_A 311 GRQSFQYFLKKE----FSGEN-LGFWEACEDLKYGDQS------------------------------------KVKEKA 349 (424)
T ss_dssp HHHHHHHHHHHT----TCTTH-HHHHHHHHHHHHSCSS------------------------------------SHHHHH
T ss_pred HHHHHHHHHHHh----CChHH-HHHHHHHHHHhcCCHH------------------------------------HHHHHH
Confidence 455677777543 33343 4799999999875111 134467
Q ss_pred cccccccccCCCCCccccc
Q 001075 473 DRYSDKLKIDNSFPHADWK 491 (1163)
Q Consensus 473 ~~~~~qyl~~~~~~~~~~~ 491 (1163)
..||+.|+...+...+.++
T Consensus 350 ~~Iy~~YI~~~Sp~eVNId 368 (424)
T 2pbi_A 350 EEIYKLFLAPGARRWINID 368 (424)
T ss_dssp HHHHHHHTSTTCTTCCCCC
T ss_pred HHHHHHHcCCCCccccCCC
Confidence 8899999999887777766
Done!