Query 001076
Match_columns 1163
No_of_seqs 590 out of 2985
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 15:10:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001076.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001076hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 8.5E-61 1.8E-65 551.7 27.5 445 645-1162 225-726 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 6.9E-57 1.5E-61 527.4 22.8 407 645-1162 220-645 (693)
3 KOG0737 AAA+-type ATPase [Post 100.0 2.1E-46 4.5E-51 417.6 21.7 298 859-1163 7-305 (386)
4 TIGR01243 CDC48 AAA family ATP 100.0 1.6E-45 3.4E-50 458.3 29.6 430 645-1162 214-665 (733)
5 COG0464 SpoVK ATPases of the A 100.0 3.6E-44 7.7E-49 428.1 29.9 419 645-1162 20-455 (494)
6 KOG0736 Peroxisome assembly fa 100.0 1.2E-42 2.6E-47 409.9 29.0 432 644-1162 432-888 (953)
7 KOG0732 AAA+-type ATPase conta 100.0 2.8E-44 6.1E-49 441.3 6.8 414 630-1134 288-728 (1080)
8 KOG0741 AAA+-type ATPase [Post 100.0 2.8E-42 6E-47 393.3 18.0 392 645-1129 258-683 (744)
9 COG1222 RPT1 ATP-dependent 26S 100.0 6.2E-41 1.4E-45 371.8 20.7 218 943-1163 145-366 (406)
10 KOG0738 AAA+-type ATPase [Post 100.0 3.7E-39 8.1E-44 358.9 19.2 224 936-1162 200-425 (491)
11 KOG0735 AAA+-type ATPase [Post 100.0 1.2E-37 2.7E-42 364.6 26.7 424 645-1163 433-879 (952)
12 KOG0739 AAA+-type ATPase [Post 100.0 2.1E-37 4.4E-42 335.0 15.3 223 936-1162 120-343 (439)
13 KOG0733 Nuclear AAA ATPase (VC 100.0 1.2E-35 2.6E-40 344.1 21.1 216 945-1163 186-405 (802)
14 KOG0734 AAA+-type ATPase conta 100.0 2.9E-35 6.4E-40 336.4 17.5 219 939-1162 294-514 (752)
15 CHL00195 ycf46 Ycf46; Provisio 100.0 4.4E-32 9.6E-37 321.9 29.7 272 848-1162 162-437 (489)
16 COG0542 clpA ATP-binding subun 100.0 1.7E-32 3.6E-37 333.5 18.8 407 688-1134 177-707 (786)
17 KOG0728 26S proteasome regulat 100.0 7.9E-32 1.7E-36 286.0 17.3 216 945-1163 143-362 (404)
18 COG1223 Predicted ATPase (AAA+ 100.0 1.3E-31 2.8E-36 286.2 16.5 211 945-1162 117-327 (368)
19 KOG0727 26S proteasome regulat 100.0 1.7E-31 3.6E-36 283.8 17.0 218 942-1162 148-369 (408)
20 KOG0731 AAA+-type ATPase conta 100.0 2.4E-31 5.2E-36 321.3 20.2 218 941-1162 303-526 (774)
21 KOG0740 AAA+-type ATPase [Post 100.0 1.2E-31 2.6E-36 308.8 15.8 217 943-1162 147-364 (428)
22 KOG0652 26S proteasome regulat 100.0 6.9E-31 1.5E-35 280.2 17.3 217 943-1162 165-385 (424)
23 PTZ00454 26S protease regulato 100.0 3.2E-30 6.9E-35 300.0 22.4 218 943-1163 139-360 (398)
24 KOG0726 26S proteasome regulat 100.0 3.8E-31 8.3E-36 285.7 11.5 217 944-1163 180-400 (440)
25 KOG0729 26S proteasome regulat 100.0 2.2E-30 4.7E-35 277.0 14.4 218 943-1163 171-392 (435)
26 PRK03992 proteasome-activating 100.0 3.8E-29 8.2E-34 291.0 21.5 217 944-1163 126-346 (389)
27 COG0465 HflB ATP-dependent Zn 100.0 4.9E-29 1.1E-33 297.2 17.9 216 943-1162 144-363 (596)
28 KOG0732 AAA+-type ATPase conta 100.0 2.7E-29 5.9E-34 309.8 15.0 298 830-1163 176-483 (1080)
29 PTZ00361 26 proteosome regulat 100.0 1.8E-28 3.9E-33 287.5 19.0 217 944-1163 178-398 (438)
30 TIGR01241 FtsH_fam ATP-depende 100.0 6.1E-28 1.3E-32 289.0 20.7 218 941-1162 47-268 (495)
31 KOG0651 26S proteasome regulat 99.9 9.3E-28 2E-32 262.4 13.6 216 945-1163 128-347 (388)
32 TIGR01242 26Sp45 26S proteasom 99.9 9.7E-27 2.1E-31 268.6 21.1 218 943-1163 116-337 (364)
33 KOG0730 AAA+-type ATPase [Post 99.9 7.3E-27 1.6E-31 275.5 18.6 211 946-1162 182-394 (693)
34 TIGR03689 pup_AAA proteasome A 99.9 1.6E-26 3.4E-31 274.7 20.3 211 943-1162 176-403 (512)
35 CHL00176 ftsH cell division pr 99.9 1.9E-26 4.2E-31 281.4 20.4 216 943-1162 177-396 (638)
36 PLN00020 ribulose bisphosphate 99.9 5.2E-25 1.1E-29 249.0 19.1 168 981-1152 145-330 (413)
37 PRK10733 hflB ATP-dependent me 99.9 5.5E-25 1.2E-29 270.5 20.5 217 942-1162 145-365 (644)
38 TIGR01243 CDC48 AAA family ATP 99.9 1.2E-24 2.5E-29 271.9 21.7 215 944-1162 173-389 (733)
39 CHL00206 ycf2 Ycf2; Provisiona 99.9 8.2E-25 1.8E-29 279.1 18.3 175 981-1162 1627-1850(2281)
40 PRK11034 clpA ATP-dependent Cl 99.9 1.5E-23 3.3E-28 260.0 20.2 390 710-1160 247-706 (758)
41 KOG0741 AAA+-type ATPase [Post 99.9 1.1E-23 2.4E-28 241.9 9.9 214 946-1162 216-448 (744)
42 TIGR02639 ClpA ATP-dependent C 99.9 1.7E-22 3.6E-27 252.3 21.0 407 688-1161 189-703 (731)
43 COG1222 RPT1 ATP-dependent 26S 99.9 7.3E-23 1.6E-27 228.5 5.7 187 645-915 187-393 (406)
44 TIGR03345 VI_ClpV1 type VI sec 99.9 4E-21 8.6E-26 242.3 21.5 430 689-1161 195-822 (852)
45 CHL00095 clpC Clp protease ATP 99.8 4.7E-20 1E-24 233.0 22.1 433 687-1161 185-773 (821)
46 PRK10865 protein disaggregatio 99.8 6.3E-20 1.4E-24 232.0 20.5 404 689-1134 186-781 (857)
47 TIGR03346 chaperone_ClpB ATP-d 99.8 2.1E-19 4.5E-24 227.8 22.0 431 689-1161 181-817 (852)
48 KOG0738 AAA+-type ATPase [Post 99.8 2.5E-20 5.3E-25 209.2 8.3 203 645-917 247-472 (491)
49 KOG0742 AAA+-type ATPase [Post 99.8 1.6E-18 3.4E-23 195.0 17.1 205 947-1162 353-585 (630)
50 PF00004 AAA: ATPase family as 99.8 1.6E-18 3.5E-23 169.1 13.7 130 987-1118 1-132 (132)
51 KOG0737 AAA+-type ATPase [Post 99.8 3E-18 6.5E-23 192.8 12.9 233 434-885 72-317 (386)
52 KOG0744 AAA+-type ATPase [Post 99.7 3.4E-18 7.4E-23 188.6 10.5 224 936-1161 129-388 (423)
53 CHL00181 cbbX CbbX; Provisiona 99.7 5.9E-17 1.3E-21 182.0 18.9 202 950-1162 24-247 (287)
54 COG0464 SpoVK ATPases of the A 99.7 1.9E-17 4.2E-22 198.6 13.4 160 679-916 313-485 (494)
55 TIGR02881 spore_V_K stage V sp 99.7 1.3E-16 2.9E-21 176.5 17.5 189 948-1148 5-208 (261)
56 TIGR02880 cbbX_cfxQ probable R 99.7 2.4E-16 5.2E-21 176.9 18.1 188 950-1148 23-225 (284)
57 KOG1051 Chaperone HSP104 and r 99.7 1.5E-16 3.2E-21 197.3 17.6 405 687-1133 193-785 (898)
58 KOG0735 AAA+-type ATPase [Post 99.7 1.1E-16 2.5E-21 189.6 14.7 202 949-1162 408-617 (952)
59 KOG0734 AAA+-type ATPase conta 99.7 3.2E-17 7E-22 189.4 6.4 167 645-881 339-523 (752)
60 KOG0726 26S proteasome regulat 99.7 3.9E-17 8.4E-22 177.9 4.8 186 645-914 221-426 (440)
61 KOG0743 AAA+-type ATPase [Post 99.7 9.8E-16 2.1E-20 176.7 16.1 206 945-1161 197-412 (457)
62 PF05496 RuvB_N: Holliday junc 99.7 6E-16 1.3E-20 166.4 12.7 192 946-1159 21-220 (233)
63 KOG0736 Peroxisome assembly fa 99.6 5.9E-15 1.3E-19 176.9 20.1 176 985-1163 432-607 (953)
64 KOG0739 AAA+-type ATPase [Post 99.6 8.3E-17 1.8E-21 175.8 3.4 164 650-880 173-351 (439)
65 TIGR02639 ClpA ATP-dependent C 99.6 3.5E-15 7.6E-20 187.0 18.2 186 946-1156 179-387 (731)
66 CHL00195 ycf46 Ycf46; Provisio 99.6 8.4E-16 1.8E-20 183.5 11.4 157 682-918 299-467 (489)
67 COG2256 MGS1 ATPase related to 99.6 4.9E-15 1.1E-19 168.6 16.8 175 945-1159 20-211 (436)
68 TIGR00763 lon ATP-dependent pr 99.6 1.1E-13 2.3E-18 174.8 23.3 165 950-1132 321-505 (775)
69 TIGR00635 ruvB Holliday juncti 99.6 5.2E-14 1.1E-18 158.4 18.2 187 947-1155 2-196 (305)
70 KOG0729 26S proteasome regulat 99.6 1.7E-15 3.7E-20 163.4 5.4 187 645-915 213-419 (435)
71 PRK00080 ruvB Holliday junctio 99.6 9.6E-14 2.1E-18 158.7 19.7 188 946-1155 22-217 (328)
72 KOG0728 26S proteasome regulat 99.6 3.5E-15 7.6E-20 159.9 6.1 187 645-914 183-388 (404)
73 KOG0652 26S proteasome regulat 99.5 4E-15 8.7E-20 160.2 6.1 187 645-914 207-412 (424)
74 COG2255 RuvB Holliday junction 99.5 7E-14 1.5E-18 153.2 15.7 191 945-1157 22-220 (332)
75 PRK11034 clpA ATP-dependent Cl 99.5 4.1E-14 9E-19 176.6 15.7 183 947-1153 184-388 (758)
76 COG0465 HflB ATP-dependent Zn 99.5 2.9E-15 6.2E-20 180.1 5.2 172 645-885 185-376 (596)
77 TIGR03345 VI_ClpV1 type VI sec 99.5 1.1E-13 2.4E-18 175.5 18.3 185 946-1155 184-391 (852)
78 PRK10865 protein disaggregatio 99.5 1.2E-13 2.6E-18 175.4 17.9 184 946-1154 175-381 (857)
79 PRK14956 DNA polymerase III su 99.5 2.8E-13 6E-18 160.4 19.4 179 945-1159 14-221 (484)
80 PRK07003 DNA polymerase III su 99.5 2.3E-13 4.9E-18 166.5 19.1 179 945-1159 12-219 (830)
81 PRK12323 DNA polymerase III su 99.5 1.9E-13 4E-18 165.5 17.6 178 945-1158 12-223 (700)
82 KOG0731 AAA+-type ATPase conta 99.5 7.4E-15 1.6E-19 179.2 4.8 173 645-884 346-538 (774)
83 CHL00095 clpC Clp protease ATP 99.5 2.4E-13 5.2E-18 172.5 17.8 184 947-1155 177-382 (821)
84 TIGR03346 chaperone_ClpB ATP-d 99.5 3.1E-13 6.7E-18 172.0 18.5 185 946-1155 170-377 (852)
85 PRK05342 clpX ATP-dependent pr 99.5 5.6E-13 1.2E-17 156.7 17.4 211 951-1161 73-370 (412)
86 CHL00206 ycf2 Ycf2; Provisiona 99.5 1.9E-14 4.2E-19 185.7 4.8 130 690-884 1721-1862(2281)
87 PTZ00454 26S protease regulato 99.5 3.3E-14 7.3E-19 166.4 6.0 188 644-914 180-386 (398)
88 PRK14962 DNA polymerase III su 99.5 2E-12 4.3E-17 154.6 20.5 174 945-1154 10-212 (472)
89 PRK14949 DNA polymerase III su 99.5 2E-12 4.4E-17 160.8 20.2 178 945-1158 12-218 (944)
90 PRK04195 replication factor C 99.4 2.3E-12 5E-17 154.8 19.8 181 945-1156 10-198 (482)
91 TIGR00390 hslU ATP-dependent p 99.4 7.9E-13 1.7E-17 153.7 15.0 201 950-1150 13-378 (441)
92 PRK07994 DNA polymerase III su 99.4 2.2E-12 4.9E-17 158.0 19.7 179 945-1159 12-219 (647)
93 PRK14960 DNA polymerase III su 99.4 2.5E-12 5.4E-17 156.1 19.5 173 945-1153 11-212 (702)
94 TIGR02902 spore_lonB ATP-depen 99.4 1.6E-12 3.4E-17 157.7 16.5 196 945-1162 61-305 (531)
95 PRK05201 hslU ATP-dependent pr 99.4 9.9E-13 2.2E-17 152.9 13.8 202 950-1151 16-381 (443)
96 PRK13342 recombination factor 99.4 4.4E-12 9.5E-17 149.6 19.0 171 946-1156 9-192 (413)
97 PRK07940 DNA polymerase III su 99.4 3.6E-12 7.9E-17 149.2 18.0 189 947-1160 3-213 (394)
98 PRK03992 proteasome-activating 99.4 1.5E-13 3.2E-18 160.8 6.5 190 644-916 166-374 (389)
99 PRK14961 DNA polymerase III su 99.4 6.2E-12 1.3E-16 146.0 19.1 173 945-1153 12-213 (363)
100 PTZ00361 26 proteosome regulat 99.4 1.1E-13 2.4E-18 163.4 4.5 188 644-914 218-424 (438)
101 PRK14958 DNA polymerase III su 99.4 4.6E-12 9.9E-17 152.8 18.4 172 945-1152 12-212 (509)
102 KOG2028 ATPase related to the 99.4 2.8E-12 6.1E-17 143.8 15.1 177 945-1161 134-337 (554)
103 COG0466 Lon ATP-dependent Lon 99.4 1.2E-11 2.5E-16 149.1 21.3 172 950-1133 324-509 (782)
104 TIGR00382 clpX endopeptidase C 99.4 5.1E-12 1.1E-16 148.2 17.3 211 951-1161 79-376 (413)
105 PRK06645 DNA polymerase III su 99.4 9.4E-12 2E-16 149.6 19.7 174 945-1154 17-223 (507)
106 PLN03025 replication factor C 99.4 9E-12 2E-16 142.1 18.2 171 945-1152 9-192 (319)
107 PRK14964 DNA polymerase III su 99.4 9.7E-12 2.1E-16 148.6 18.9 173 945-1153 9-210 (491)
108 PRK08691 DNA polymerase III su 99.4 1.2E-11 2.7E-16 151.3 18.9 174 945-1154 12-214 (709)
109 PRK14959 DNA polymerase III su 99.4 1.3E-11 2.8E-16 150.3 19.1 176 945-1156 12-216 (624)
110 PRK07764 DNA polymerase III su 99.4 1.4E-11 3.1E-16 155.1 19.7 172 945-1152 11-213 (824)
111 KOG0740 AAA+-type ATPase [Post 99.4 3.2E-13 6.8E-18 157.1 4.3 201 646-916 189-406 (428)
112 PF05673 DUF815: Protein of un 99.4 2E-11 4.4E-16 133.3 17.9 182 945-1156 23-236 (249)
113 PHA02544 44 clamp loader, smal 99.4 2.3E-11 5.1E-16 137.7 19.2 158 944-1133 16-174 (316)
114 PRK14951 DNA polymerase III su 99.4 1.7E-11 3.8E-16 149.9 19.2 172 945-1152 12-217 (618)
115 PRK14963 DNA polymerase III su 99.3 2.4E-11 5.2E-16 146.4 19.8 175 945-1155 10-212 (504)
116 KOG2004 Mitochondrial ATP-depe 99.3 8.1E-12 1.8E-16 149.5 15.3 173 949-1134 411-598 (906)
117 PRK14952 DNA polymerase III su 99.3 2.9E-11 6.3E-16 147.5 20.4 173 945-1153 9-212 (584)
118 PRK14957 DNA polymerase III su 99.3 3E-11 6.4E-16 146.2 20.4 174 945-1154 12-214 (546)
119 PRK14969 DNA polymerase III su 99.3 1.8E-11 3.8E-16 148.5 18.1 175 945-1155 12-215 (527)
120 PRK05563 DNA polymerase III su 99.3 2.8E-11 6.1E-16 147.7 19.8 172 945-1152 12-212 (559)
121 PRK12402 replication factor C 99.3 5.2E-11 1.1E-15 135.4 19.2 177 945-1152 11-218 (337)
122 PRK05896 DNA polymerase III su 99.3 3.5E-11 7.6E-16 146.0 18.7 175 945-1155 12-215 (605)
123 KOG0989 Replication factor C, 99.3 1.6E-11 3.5E-16 136.1 13.8 176 945-1154 32-224 (346)
124 PLN00020 ribulose bisphosphate 99.3 1.2E-12 2.7E-17 149.3 5.1 169 644-880 149-352 (413)
125 TIGR02397 dnaX_nterm DNA polym 99.3 6E-11 1.3E-15 136.2 18.8 173 945-1153 10-211 (355)
126 PRK14965 DNA polymerase III su 99.3 4.4E-11 9.5E-16 146.5 18.1 173 945-1153 12-213 (576)
127 TIGR01241 FtsH_fam ATP-depende 99.3 9.3E-13 2E-17 158.6 3.2 171 644-882 89-278 (495)
128 PRK10787 DNA-binding ATP-depen 99.3 2.4E-11 5.2E-16 153.0 15.7 165 950-1133 323-507 (784)
129 PRK06305 DNA polymerase III su 99.3 9.7E-11 2.1E-15 139.7 20.0 172 945-1152 13-214 (451)
130 PRK07133 DNA polymerase III su 99.3 8.9E-11 1.9E-15 145.0 19.8 181 945-1155 14-214 (725)
131 COG1223 Predicted ATPase (AAA+ 99.3 3.2E-12 7E-17 138.4 6.2 169 645-881 153-337 (368)
132 PRK00149 dnaA chromosomal repl 99.3 2.9E-11 6.3E-16 144.1 14.6 155 985-1152 149-314 (450)
133 PRK06647 DNA polymerase III su 99.3 1.1E-10 2.3E-15 142.4 19.5 173 945-1153 12-213 (563)
134 PRK14970 DNA polymerase III su 99.3 1.5E-10 3.2E-15 134.3 19.7 174 945-1152 13-201 (367)
135 PRK09111 DNA polymerase III su 99.3 1.2E-10 2.6E-15 142.6 19.6 181 945-1155 20-228 (598)
136 PRK14948 DNA polymerase III su 99.3 1.5E-10 3.2E-15 142.7 20.0 174 945-1154 12-216 (620)
137 PRK14953 DNA polymerase III su 99.3 1.6E-10 3.4E-15 138.9 19.4 173 945-1153 12-213 (486)
138 PRK13341 recombination factor 99.3 9.6E-11 2.1E-15 146.2 18.0 169 945-1153 24-210 (725)
139 TIGR03420 DnaA_homol_Hda DnaA 99.2 2.3E-10 5.1E-15 123.0 18.6 178 946-1161 12-201 (226)
140 TIGR00362 DnaA chromosomal rep 99.2 6.3E-11 1.4E-15 139.3 15.5 155 985-1152 137-302 (405)
141 PRK10733 hflB ATP-dependent me 99.2 3.8E-12 8.3E-17 157.6 5.4 172 644-883 186-376 (644)
142 TIGR02640 gas_vesic_GvpN gas v 99.2 7E-11 1.5E-15 131.5 14.6 141 985-1132 22-198 (262)
143 TIGR02928 orc1/cdc6 family rep 99.2 3.4E-10 7.4E-15 130.5 20.5 191 949-1159 15-245 (365)
144 PRK08451 DNA polymerase III su 99.2 3.2E-10 6.9E-15 136.9 20.1 172 945-1152 10-210 (535)
145 PRK08903 DnaA regulatory inact 99.2 3.8E-10 8.3E-15 122.2 18.8 167 945-1152 14-191 (227)
146 PRK14954 DNA polymerase III su 99.2 3.4E-10 7.5E-15 139.0 20.5 175 945-1155 12-223 (620)
147 PRK08084 DNA replication initi 99.2 3.9E-10 8.5E-15 123.6 18.7 174 945-1154 18-203 (235)
148 PRK14955 DNA polymerase III su 99.2 2E-10 4.3E-15 135.0 17.3 175 945-1155 12-223 (397)
149 PRK06893 DNA replication initi 99.2 2.5E-10 5.3E-15 124.7 16.8 148 985-1153 40-196 (229)
150 CHL00176 ftsH cell division pr 99.2 7.2E-12 1.6E-16 154.3 5.0 171 644-882 217-406 (638)
151 PRK00440 rfc replication facto 99.2 7.1E-10 1.5E-14 125.0 20.1 174 945-1155 13-198 (319)
152 cd00009 AAA The AAA+ (ATPases 99.2 3.4E-10 7.5E-15 110.1 15.2 124 984-1117 19-150 (151)
153 PRK14088 dnaA chromosomal repl 99.2 1.4E-10 3E-15 138.1 14.9 155 985-1152 131-297 (440)
154 KOG0727 26S proteasome regulat 99.2 9.9E-12 2.2E-16 133.9 4.3 169 645-882 191-379 (408)
155 PRK00411 cdc6 cell division co 99.2 1E-09 2.2E-14 128.1 21.3 186 948-1154 29-245 (394)
156 COG2812 DnaX DNA polymerase II 99.2 1.1E-10 2.4E-15 139.4 13.1 178 945-1152 12-212 (515)
157 TIGR03689 pup_AAA proteasome A 99.2 1.8E-11 3.9E-16 146.9 6.3 168 645-881 218-412 (512)
158 TIGR01242 26Sp45 26S proteasom 99.2 1.5E-11 3.2E-16 142.7 5.5 171 645-883 158-347 (364)
159 PRK08727 hypothetical protein; 99.2 1.1E-09 2.4E-14 119.9 19.6 148 985-1155 42-199 (233)
160 PRK14950 DNA polymerase III su 99.2 7.6E-10 1.6E-14 136.1 19.2 172 945-1152 12-213 (585)
161 PRK14971 DNA polymerase III su 99.1 1.2E-09 2.5E-14 134.8 19.8 175 945-1155 13-217 (614)
162 PRK14086 dnaA chromosomal repl 99.1 4.6E-10 9.9E-15 136.6 15.8 154 985-1152 315-480 (617)
163 PHA02244 ATPase-like protein 99.1 5.5E-10 1.2E-14 128.7 15.1 136 985-1128 120-269 (383)
164 PTZ00112 origin recognition co 99.1 1.2E-09 2.5E-14 134.8 18.6 184 949-1154 755-972 (1164)
165 TIGR02903 spore_lon_C ATP-depe 99.1 7.2E-10 1.6E-14 136.9 17.0 186 945-1150 150-385 (615)
166 PF00308 Bac_DnaA: Bacterial d 99.1 1.2E-09 2.6E-14 118.7 16.8 161 985-1159 35-206 (219)
167 TIGR01650 PD_CobS cobaltochela 99.1 1.7E-10 3.6E-15 131.4 9.4 143 985-1133 65-234 (327)
168 PRK05642 DNA replication initi 99.1 2.5E-09 5.5E-14 117.2 17.9 146 985-1152 46-200 (234)
169 COG0542 clpA ATP-binding subun 99.1 9.8E-10 2.1E-14 135.9 16.0 184 946-1154 167-373 (786)
170 PRK13407 bchI magnesium chelat 99.1 1.9E-10 4E-15 132.2 8.8 168 946-1132 5-216 (334)
171 COG1219 ClpX ATP-dependent pro 99.1 2.9E-10 6.3E-15 126.5 9.9 179 951-1129 63-311 (408)
172 PF00498 FHA: FHA domain; Int 99.1 3.2E-10 7E-15 100.3 8.3 67 154-224 1-68 (68)
173 PRK12422 chromosomal replicati 99.1 8.5E-10 1.9E-14 131.4 14.6 156 984-1152 141-305 (445)
174 PRK06620 hypothetical protein; 99.1 2.2E-09 4.7E-14 116.4 16.4 133 985-1153 45-182 (214)
175 PRK09112 DNA polymerase III su 99.1 4.2E-09 9.2E-14 122.0 19.7 186 945-1161 19-241 (351)
176 KOG0615 Serine/threonine prote 99.1 1.4E-10 2.9E-15 132.6 6.7 113 132-245 44-167 (475)
177 COG0714 MoxR-like ATPases [Gen 99.1 7.7E-10 1.7E-14 126.9 12.8 157 951-1132 26-203 (329)
178 CHL00081 chlI Mg-protoporyphyr 99.1 7.5E-10 1.6E-14 127.7 12.5 167 946-1132 14-232 (350)
179 PRK05564 DNA polymerase III su 99.0 6.8E-09 1.5E-13 118.3 19.0 172 947-1155 2-185 (313)
180 COG2607 Predicted ATPase (AAA+ 99.0 6.3E-09 1.4E-13 112.6 17.1 181 945-1155 56-267 (287)
181 PF07724 AAA_2: AAA domain (Cd 99.0 7.6E-10 1.6E-14 116.0 9.6 114 983-1099 2-130 (171)
182 PRK07471 DNA polymerase III su 99.0 6.8E-09 1.5E-13 120.9 18.3 182 945-1159 15-237 (365)
183 PRK14087 dnaA chromosomal repl 99.0 3.7E-09 8E-14 126.3 15.8 154 985-1153 142-312 (450)
184 TIGR00678 holB DNA polymerase 99.0 8.4E-09 1.8E-13 108.8 16.7 145 983-1154 13-185 (188)
185 cd00060 FHA Forkhead associate 99.0 1.8E-09 3.9E-14 101.4 9.8 97 134-234 1-101 (102)
186 smart00382 AAA ATPases associa 99.0 4E-09 8.6E-14 101.2 12.1 127 985-1119 3-147 (148)
187 KOG0651 26S proteasome regulat 99.0 1.9E-10 4.1E-15 127.6 3.1 188 645-916 168-375 (388)
188 COG1220 HslU ATP-dependent pro 99.0 3.1E-09 6.8E-14 119.2 11.3 69 950-1018 16-84 (444)
189 PF07728 AAA_5: AAA domain (dy 99.0 5.5E-10 1.2E-14 111.6 4.9 112 986-1110 1-139 (139)
190 PRK07399 DNA polymerase III su 98.9 1.4E-08 3E-13 116.2 16.0 180 947-1159 2-220 (314)
191 COG3604 FhlA Transcriptional r 98.9 3.7E-09 8E-14 123.9 11.3 160 944-1125 218-400 (550)
192 PRK11331 5-methylcytosine-spec 98.9 1.1E-08 2.4E-13 120.7 15.3 142 949-1118 175-357 (459)
193 TIGR02442 Cob-chelat-sub cobal 98.9 2.4E-09 5.2E-14 132.8 9.7 167 947-1132 2-214 (633)
194 PRK09087 hypothetical protein; 98.9 1.6E-08 3.5E-13 110.5 14.8 137 985-1152 45-187 (226)
195 KOG0991 Replication factor C, 98.9 9.4E-09 2E-13 110.5 12.2 183 945-1161 23-215 (333)
196 COG3829 RocR Transcriptional r 98.9 1.9E-09 4.1E-14 127.7 7.7 159 945-1125 241-423 (560)
197 PF01078 Mg_chelatase: Magnesi 98.9 8.3E-10 1.8E-14 118.4 3.6 46 947-1008 1-46 (206)
198 PF07726 AAA_3: ATPase family 98.9 1E-09 2.2E-14 109.5 3.8 118 986-1111 1-130 (131)
199 TIGR02030 BchI-ChlI magnesium 98.9 5.9E-09 1.3E-13 120.1 10.5 166 947-1131 2-218 (337)
200 KOG1969 DNA replication checkp 98.9 3.9E-08 8.4E-13 119.1 17.0 151 982-1152 323-502 (877)
201 KOG0745 Putative ATP-dependent 98.9 2.2E-08 4.7E-13 115.4 13.9 72 985-1056 227-304 (564)
202 COG2204 AtoC Response regulato 98.9 7.2E-09 1.6E-13 122.7 10.4 167 947-1134 139-331 (464)
203 PRK05707 DNA polymerase III su 98.8 5.3E-08 1.1E-12 112.0 16.9 152 982-1156 20-199 (328)
204 COG0470 HolB ATPase involved i 98.8 2.6E-08 5.5E-13 112.5 14.0 149 950-1129 2-178 (325)
205 smart00350 MCM minichromosome 98.8 1.3E-08 2.7E-13 123.6 10.8 174 950-1133 204-401 (509)
206 COG0593 DnaA ATPase involved i 98.8 6.5E-08 1.4E-12 113.2 15.7 155 983-1151 112-277 (408)
207 PF00158 Sigma54_activat: Sigm 98.8 5.7E-09 1.2E-13 109.2 6.1 140 951-1110 1-162 (168)
208 PRK15429 formate hydrogenlyase 98.8 5.7E-08 1.2E-12 121.9 16.1 168 946-1134 373-566 (686)
209 COG1221 PspF Transcriptional r 98.8 1E-08 2.2E-13 119.7 8.5 168 945-1134 74-266 (403)
210 TIGR01817 nifA Nif-specific re 98.8 1.3E-08 2.7E-13 124.2 9.6 169 945-1134 192-386 (534)
211 PRK11608 pspF phage shock prot 98.8 3.2E-08 6.9E-13 113.7 11.8 166 947-1133 4-195 (326)
212 PRK13531 regulatory ATPase Rav 98.8 3E-08 6.6E-13 118.0 11.8 160 950-1131 21-193 (498)
213 PRK08058 DNA polymerase III su 98.8 8.1E-08 1.8E-12 110.6 14.7 149 947-1130 3-180 (329)
214 COG1474 CDC6 Cdc6-related prot 98.8 1.4E-07 3E-12 110.1 16.4 179 950-1151 18-225 (366)
215 COG1224 TIP49 DNA helicase TIP 98.8 2.2E-07 4.8E-12 105.4 17.1 52 1099-1151 342-394 (450)
216 PRK15424 propionate catabolism 98.7 1.8E-08 3.8E-13 122.5 9.0 168 946-1134 216-418 (538)
217 TIGR02974 phageshock_pspF psp 98.7 2.4E-08 5.2E-13 114.9 9.5 161 952-1133 2-188 (329)
218 PRK05022 anaerobic nitric oxid 98.7 5.1E-08 1.1E-12 118.3 12.9 166 947-1133 185-376 (509)
219 PRK10820 DNA-binding transcrip 98.7 4.1E-08 8.8E-13 119.5 12.0 158 945-1125 200-381 (520)
220 PF06068 TIP49: TIP49 C-termin 98.7 1.2E-07 2.6E-12 108.9 14.7 91 1043-1151 278-381 (398)
221 PRK04132 replication factor C 98.7 1.7E-07 3.6E-12 118.5 16.8 155 982-1159 562-730 (846)
222 TIGR02329 propionate_PrpR prop 98.7 2.2E-08 4.9E-13 121.5 8.7 168 946-1134 209-403 (526)
223 PRK11388 DNA-binding transcrip 98.7 3.8E-08 8.3E-13 122.4 11.0 167 946-1133 322-511 (638)
224 TIGR02031 BchD-ChlD magnesium 98.7 7.5E-08 1.6E-12 118.7 10.8 143 985-1132 17-174 (589)
225 PRK06871 DNA polymerase III su 98.7 9.7E-07 2.1E-11 101.5 19.0 168 954-1155 7-198 (325)
226 PRK08116 hypothetical protein; 98.6 2.3E-07 5E-12 104.0 13.3 162 935-1120 71-250 (268)
227 COG1239 ChlI Mg-chelatase subu 98.6 3.1E-07 6.7E-12 106.8 14.3 168 947-1134 15-234 (423)
228 PRK07993 DNA polymerase III su 98.6 9.2E-07 2E-11 102.2 17.8 156 982-1158 22-202 (334)
229 TIGR00602 rad24 checkpoint pro 98.6 8.4E-07 1.8E-11 109.7 17.9 190 945-1158 80-321 (637)
230 PF13177 DNA_pol3_delta2: DNA 98.6 4.2E-07 9.2E-12 94.5 12.9 134 953-1119 1-161 (162)
231 PRK08769 DNA polymerase III su 98.6 1.1E-06 2.4E-11 100.8 17.3 171 954-1159 9-207 (319)
232 KOG2035 Replication factor C, 98.6 1.6E-06 3.5E-11 95.8 16.9 181 946-1157 10-225 (351)
233 smart00763 AAA_PrkA PrkA AAA d 98.6 1.1E-06 2.4E-11 101.6 16.4 62 948-1017 49-118 (361)
234 TIGR00368 Mg chelatase-related 98.6 1.4E-07 3E-12 114.1 9.0 153 946-1122 189-394 (499)
235 PRK06964 DNA polymerase III su 98.5 1.9E-06 4E-11 99.8 17.6 133 982-1131 19-203 (342)
236 PRK12377 putative replication 98.5 6E-07 1.3E-11 99.6 12.9 110 932-1055 57-175 (248)
237 PTZ00111 DNA replication licen 98.5 2.6E-07 5.6E-12 116.4 11.1 188 928-1133 438-658 (915)
238 TIGR00764 lon_rel lon-related 98.5 7.2E-07 1.6E-11 110.4 13.3 50 946-1011 15-64 (608)
239 TIGR02915 PEP_resp_reg putativ 98.5 3.4E-07 7.5E-12 108.7 10.0 166 948-1134 138-329 (445)
240 PRK06090 DNA polymerase III su 98.5 4.3E-06 9.2E-11 96.0 17.8 144 954-1130 8-178 (319)
241 TIGR03015 pepcterm_ATPase puta 98.5 4.4E-06 9.4E-11 92.4 17.3 164 985-1162 44-239 (269)
242 PRK10923 glnG nitrogen regulat 98.4 1.1E-06 2.5E-11 105.1 12.8 166 948-1134 137-328 (469)
243 PRK07952 DNA replication prote 98.4 1.9E-06 4E-11 95.6 13.4 111 931-1055 54-174 (244)
244 PF01637 Arch_ATPase: Archaeal 98.4 9.4E-07 2E-11 94.1 10.1 180 952-1155 2-229 (234)
245 TIGR03354 VI_FHA type VI secre 98.4 4E-07 8.6E-12 107.2 7.8 82 146-232 18-103 (396)
246 COG0606 Predicted ATPase with 98.4 1.6E-07 3.5E-12 110.5 3.0 149 945-1122 175-382 (490)
247 PF14532 Sigma54_activ_2: Sigm 98.3 6E-07 1.3E-11 90.4 6.0 125 953-1119 2-136 (138)
248 PRK11361 acetoacetate metaboli 98.3 4.8E-06 1E-10 99.3 14.1 156 950-1126 144-321 (457)
249 KOG1942 DNA helicase, TBP-inte 98.3 9.2E-06 2E-10 90.2 14.5 88 1043-1148 296-397 (456)
250 PRK09862 putative ATP-dependen 98.3 1.2E-06 2.6E-11 105.8 8.4 153 946-1122 188-391 (506)
251 KOG0990 Replication factor C, 98.3 1.5E-06 3.3E-11 97.8 7.6 161 942-1136 34-207 (360)
252 PF05621 TniB: Bacterial TniB 98.3 1.4E-05 3.1E-10 90.4 15.2 166 985-1160 62-261 (302)
253 PRK08181 transposase; Validate 98.2 4.5E-06 9.7E-11 93.8 10.7 69 985-1055 107-179 (269)
254 PRK15115 response regulator Gl 98.2 8.9E-06 1.9E-10 96.7 13.4 141 985-1134 158-324 (444)
255 PF03215 Rad17: Rad17 cell cyc 98.2 3.4E-05 7.3E-10 94.0 18.1 192 945-1157 15-260 (519)
256 KOG2227 Pre-initiation complex 98.2 2.3E-05 5E-10 92.1 15.6 184 950-1156 151-364 (529)
257 PRK08939 primosomal protein Dn 98.2 7.3E-06 1.6E-10 93.7 11.3 69 984-1054 156-228 (306)
258 PF13173 AAA_14: AAA domain 98.2 6.9E-06 1.5E-10 81.7 9.3 118 985-1123 3-126 (128)
259 PRK08699 DNA polymerase III su 98.2 1.3E-05 2.8E-10 92.5 12.7 132 982-1130 19-183 (325)
260 KOG1514 Origin recognition com 98.1 2E-05 4.2E-10 96.2 13.9 185 950-1156 397-613 (767)
261 PF01695 IstB_IS21: IstB-like 98.1 4.5E-06 9.8E-11 88.2 7.2 69 984-1054 47-119 (178)
262 PRK06835 DNA replication prote 98.1 8.8E-06 1.9E-10 93.9 10.0 111 985-1110 184-305 (329)
263 PRK06526 transposase; Provisio 98.1 6.1E-06 1.3E-10 92.0 8.0 70 984-1055 98-171 (254)
264 PF13401 AAA_22: AAA domain; P 98.1 1.5E-05 3.4E-10 78.1 9.3 72 985-1056 5-100 (131)
265 TIGR01818 ntrC nitrogen regula 98.1 1.3E-05 2.8E-10 95.8 10.3 167 950-1134 135-324 (463)
266 COG1241 MCM2 Predicted ATPase 98.0 1.1E-05 2.3E-10 100.0 9.1 191 927-1135 273-486 (682)
267 PRK06921 hypothetical protein; 98.0 1.3E-05 2.9E-10 89.9 8.9 67 985-1054 118-188 (266)
268 COG1484 DnaC DNA replication p 98.0 2.8E-05 6.2E-10 86.7 11.4 70 984-1055 105-179 (254)
269 KOG0478 DNA replication licens 98.0 5.8E-05 1.2E-09 91.8 13.9 177 950-1134 430-628 (804)
270 PRK13765 ATP-dependent proteas 98.0 2.3E-05 5E-10 97.3 10.8 48 946-1009 28-75 (637)
271 PF00493 MCM: MCM2/3/5 family 98.0 1E-06 2.3E-11 101.6 -0.9 176 950-1135 25-224 (331)
272 PRK09183 transposase/IS protei 98.0 1.8E-05 3.9E-10 88.5 8.9 70 985-1055 103-176 (259)
273 PF12774 AAA_6: Hydrolytic ATP 98.0 6.1E-05 1.3E-09 83.0 12.7 130 985-1127 33-175 (231)
274 smart00240 FHA Forkhead associ 98.0 1.2E-05 2.6E-10 67.2 5.5 50 154-207 1-52 (52)
275 PLN02927 antheraxanthin epoxid 98.0 1.4E-05 3E-10 99.6 8.4 84 143-231 545-642 (668)
276 PRK05917 DNA polymerase III su 98.0 0.00017 3.7E-09 81.9 16.2 121 982-1119 17-154 (290)
277 PRK10365 transcriptional regul 97.9 3.4E-05 7.3E-10 91.5 10.6 141 985-1134 163-329 (441)
278 COG3283 TyrR Transcriptional r 97.9 1.3E-05 2.8E-10 91.3 6.6 160 945-1125 200-376 (511)
279 PF05729 NACHT: NACHT domain 97.9 8.4E-05 1.8E-09 75.2 11.7 140 986-1134 2-165 (166)
280 cd01120 RecA-like_NTPases RecA 97.9 6E-05 1.3E-09 75.5 10.3 71 987-1057 2-99 (165)
281 PF00931 NB-ARC: NB-ARC domain 97.9 0.00011 2.5E-09 81.8 13.4 150 983-1153 18-195 (287)
282 PF12775 AAA_7: P-loop contain 97.9 3.7E-05 8.1E-10 86.6 8.6 139 985-1134 34-195 (272)
283 PRK13406 bchD magnesium chelat 97.8 1.3E-05 2.7E-10 98.9 4.8 131 985-1123 26-173 (584)
284 KOG0744 AAA+-type ATPase [Post 97.8 2.8E-05 6E-10 87.8 6.7 75 442-521 130-204 (423)
285 PRK07132 DNA polymerase III su 97.8 0.0012 2.6E-08 75.6 18.5 142 984-1152 18-177 (299)
286 KOG0742 AAA+-type ATPase [Post 97.7 7.9E-05 1.7E-09 86.0 8.9 181 645-874 386-587 (630)
287 COG4650 RtcR Sigma54-dependent 97.7 3.8E-05 8.3E-10 85.3 5.6 132 985-1126 209-366 (531)
288 KOG2170 ATPase of the AAA+ sup 97.7 0.0005 1.1E-08 77.5 14.0 185 950-1153 83-322 (344)
289 COG1716 FOG: FHA domain [Signa 97.7 0.00015 3.3E-09 76.4 9.7 75 147-228 84-159 (191)
290 COG5271 MDN1 AAA ATPase contai 97.7 0.00025 5.3E-09 91.7 11.9 136 985-1134 1544-1705(4600)
291 KOG0482 DNA replication licens 97.6 6.1E-05 1.3E-09 88.8 5.6 185 927-1133 329-540 (721)
292 PRK07276 DNA polymerase III su 97.6 0.0019 4.1E-08 73.6 17.4 127 982-1128 22-171 (290)
293 PLN03210 Resistant to P. syrin 97.6 0.0013 2.9E-08 87.7 18.6 173 946-1154 181-389 (1153)
294 KOG1970 Checkpoint RAD17-RFC c 97.6 0.0025 5.4E-08 76.7 18.5 196 945-1159 78-314 (634)
295 KOG2680 DNA helicase TIP49, TB 97.6 0.00066 1.4E-08 76.2 12.6 78 1043-1138 288-377 (454)
296 PRK05818 DNA polymerase III su 97.6 0.00087 1.9E-08 75.0 13.4 121 982-1119 5-147 (261)
297 KOG0480 DNA replication licens 97.5 0.00065 1.4E-08 82.4 12.8 192 925-1135 330-545 (764)
298 COG1618 Predicted nucleotide k 97.5 0.0018 3.9E-08 67.5 13.6 24 985-1008 6-29 (179)
299 PF00004 AAA: ATPase family as 97.5 0.00015 3.3E-09 70.7 5.6 100 646-749 1-114 (132)
300 COG3284 AcoR Transcriptional a 97.5 8E-05 1.7E-09 90.6 4.3 143 985-1134 337-501 (606)
301 KOG1968 Replication factor C, 97.4 0.00024 5.2E-09 90.8 7.7 155 987-1160 360-527 (871)
302 PHA00729 NTP-binding motif con 97.4 0.0003 6.6E-09 77.2 7.2 28 985-1012 18-45 (226)
303 KOG2228 Origin recognition com 97.4 0.00095 2.1E-08 76.2 11.2 161 950-1132 25-219 (408)
304 KOG1881 Anion exchanger adapto 97.4 0.0006 1.3E-08 83.4 10.0 88 151-241 176-272 (793)
305 PF14516 AAA_35: AAA-like doma 97.4 0.0092 2E-07 69.2 19.4 164 983-1155 30-234 (331)
306 cd01124 KaiC KaiC is a circadi 97.4 0.0011 2.3E-08 69.3 10.6 71 987-1057 2-109 (187)
307 TIGR01618 phage_P_loop phage n 97.4 0.00052 1.1E-08 75.2 8.5 76 980-1057 8-95 (220)
308 TIGR02237 recomb_radB DNA repa 97.4 0.00075 1.6E-08 72.3 9.5 73 985-1057 13-111 (209)
309 PF03969 AFG1_ATPase: AFG1-lik 97.3 0.0016 3.4E-08 76.5 12.3 30 981-1010 59-88 (362)
310 KOG1051 Chaperone HSP104 and r 97.3 0.0019 4.1E-08 82.4 13.6 162 948-1134 185-365 (898)
311 PF00910 RNA_helicase: RNA hel 97.3 0.00044 9.4E-09 67.1 5.9 23 987-1009 1-23 (107)
312 KOG0477 DNA replication licens 97.2 0.00049 1.1E-08 83.1 6.8 168 927-1116 436-629 (854)
313 PF13207 AAA_17: AAA domain; P 97.2 0.00036 7.8E-09 67.8 4.2 31 987-1017 2-32 (121)
314 PF05707 Zot: Zonular occluden 97.2 0.00047 1E-08 73.7 5.3 123 987-1119 3-146 (193)
315 COG3456 Predicted component of 97.0 0.00074 1.6E-08 78.7 5.8 75 150-234 24-101 (430)
316 PRK08118 topology modulation p 97.0 0.0013 2.8E-08 68.9 7.1 33 985-1017 2-34 (167)
317 KOG0481 DNA replication licens 97.0 0.001 2.2E-08 79.0 6.9 175 950-1132 332-528 (729)
318 PRK04841 transcriptional regul 97.0 0.014 3E-07 75.6 17.9 153 985-1155 33-220 (903)
319 PRK15455 PrkA family serine pr 97.0 0.00085 1.8E-08 81.9 6.3 63 947-1017 74-137 (644)
320 cd01121 Sms Sms (bacterial rad 97.0 0.0035 7.6E-08 73.9 11.1 96 984-1079 82-196 (372)
321 PRK11823 DNA repair protein Ra 97.0 0.0037 7.9E-08 75.4 11.3 96 984-1079 80-194 (446)
322 COG3267 ExeA Type II secretory 97.0 0.012 2.7E-07 65.4 14.0 165 986-1162 53-246 (269)
323 PRK07261 topology modulation p 97.0 0.0019 4E-08 67.9 7.4 34 986-1019 2-35 (171)
324 PF13191 AAA_16: AAA ATPase do 96.9 0.0022 4.9E-08 66.3 7.8 59 951-1020 2-63 (185)
325 KOG0479 DNA replication licens 96.9 0.0039 8.4E-08 75.2 9.9 172 950-1133 302-499 (818)
326 PF03266 NTPase_1: NTPase; In 96.9 0.00066 1.4E-08 71.4 3.2 27 986-1012 1-30 (168)
327 PRK00131 aroK shikimate kinase 96.9 0.0011 2.4E-08 68.1 4.7 34 983-1016 3-36 (175)
328 PRK13949 shikimate kinase; Pro 96.8 0.0042 9.2E-08 65.2 8.9 32 985-1016 2-33 (169)
329 PRK09361 radB DNA repair and r 96.8 0.0047 1E-07 67.1 9.4 34 985-1018 24-60 (225)
330 cd01129 PulE-GspE PulE/GspE Th 96.8 0.0051 1.1E-07 69.2 9.4 93 946-1053 57-159 (264)
331 TIGR02012 tigrfam_recA protein 96.8 0.007 1.5E-07 70.0 10.6 74 985-1058 56-148 (321)
332 cd00983 recA RecA is a bacter 96.7 0.013 2.7E-07 68.0 12.2 74 985-1058 56-148 (325)
333 PRK04296 thymidine kinase; Pro 96.7 0.016 3.5E-07 61.9 12.3 69 986-1055 4-90 (190)
334 PRK08533 flagellar accessory p 96.7 0.013 2.8E-07 64.6 11.8 73 984-1056 24-130 (230)
335 COG1373 Predicted ATPase (AAA+ 96.7 0.016 3.4E-07 69.1 13.0 121 986-1126 39-161 (398)
336 PF13671 AAA_33: AAA domain; P 96.6 0.004 8.7E-08 62.1 6.6 32 987-1020 2-33 (143)
337 PF13604 AAA_30: AAA domain; P 96.6 0.0056 1.2E-07 65.8 8.0 98 985-1098 19-132 (196)
338 cd01131 PilT Pilus retraction 96.6 0.0042 9E-08 66.8 6.9 68 986-1053 3-84 (198)
339 cd01394 radB RadB. The archaea 96.6 0.015 3.2E-07 62.9 11.1 34 985-1018 20-56 (218)
340 PRK13695 putative NTPase; Prov 96.6 0.012 2.6E-07 61.5 10.1 23 986-1008 2-24 (174)
341 PRK00771 signal recognition pa 96.6 0.036 7.7E-07 66.8 15.0 71 983-1055 94-187 (437)
342 PRK13947 shikimate kinase; Pro 96.5 0.0022 4.9E-08 66.3 4.2 31 986-1016 3-33 (171)
343 COG5271 MDN1 AAA ATPase contai 96.5 0.0071 1.5E-07 79.2 8.9 135 985-1130 889-1045(4600)
344 PRK03839 putative kinase; Prov 96.5 0.0022 4.8E-08 67.2 4.0 31 986-1016 2-32 (180)
345 CHL00181 cbbX CbbX; Provisiona 96.5 0.0043 9.3E-08 70.7 6.6 178 646-885 62-260 (287)
346 PF06309 Torsin: Torsin; Inte 96.5 0.013 2.8E-07 59.1 8.9 52 950-1008 26-77 (127)
347 KOG2543 Origin recognition com 96.4 0.016 3.5E-07 67.5 10.6 59 950-1019 7-65 (438)
348 PRK08233 hypothetical protein; 96.4 0.027 5.8E-07 58.6 11.4 33 985-1017 4-37 (182)
349 PF06745 KaiC: KaiC; InterPro 96.4 0.025 5.4E-07 61.5 11.5 123 985-1117 20-184 (226)
350 cd00464 SK Shikimate kinase (S 96.4 0.0031 6.8E-08 63.7 4.1 31 986-1016 1-31 (154)
351 PHA02774 E1; Provisional 96.4 0.019 4.2E-07 70.5 11.4 130 985-1141 435-590 (613)
352 PRK00625 shikimate kinase; Pro 96.4 0.0032 6.9E-08 66.6 4.3 31 986-1016 2-32 (173)
353 PRK14974 cell division protein 96.3 0.032 7E-07 65.0 12.5 72 984-1055 140-234 (336)
354 COG3854 SpoIIIAA ncharacterize 96.3 0.02 4.4E-07 62.9 10.0 71 985-1055 138-230 (308)
355 TIGR02880 cbbX_cfxQ probable R 96.3 0.0068 1.5E-07 68.9 6.7 131 644-821 59-206 (284)
356 PRK09376 rho transcription ter 96.3 0.008 1.7E-07 70.9 7.3 72 985-1056 170-269 (416)
357 PRK06067 flagellar accessory p 96.3 0.043 9.3E-07 60.2 12.6 72 985-1056 26-133 (234)
358 TIGR02688 conserved hypothetic 96.3 0.0087 1.9E-07 71.2 7.5 59 985-1055 210-272 (449)
359 PRK10536 hypothetical protein; 96.3 0.022 4.8E-07 64.0 10.3 22 986-1007 76-97 (262)
360 PRK13948 shikimate kinase; Pro 96.3 0.0046 1E-07 66.0 4.7 36 981-1016 7-42 (182)
361 PF00437 T2SE: Type II/IV secr 96.2 0.0054 1.2E-07 68.6 5.4 95 947-1053 102-207 (270)
362 cd00984 DnaB_C DnaB helicase C 96.2 0.035 7.5E-07 60.8 11.5 36 983-1018 12-51 (242)
363 TIGR00416 sms DNA repair prote 96.2 0.025 5.4E-07 68.5 11.2 75 983-1057 93-184 (454)
364 cd00544 CobU Adenosylcobinamid 96.2 0.024 5.2E-07 59.8 9.8 71 987-1059 2-89 (169)
365 PRK05800 cobU adenosylcobinami 96.2 0.024 5.2E-07 59.9 9.7 68 986-1057 3-90 (170)
366 TIGR02858 spore_III_AA stage I 96.2 0.012 2.6E-07 66.6 7.8 69 985-1053 112-204 (270)
367 PRK06217 hypothetical protein; 96.2 0.0047 1E-07 65.2 4.3 32 985-1016 2-33 (183)
368 PRK14532 adenylate kinase; Pro 96.2 0.0046 9.9E-08 65.3 4.1 30 986-1015 2-31 (188)
369 cd01128 rho_factor Transcripti 96.2 0.039 8.4E-07 61.8 11.5 26 985-1010 17-42 (249)
370 cd03283 ABC_MutS-like MutS-lik 96.2 0.032 7E-07 60.2 10.6 69 985-1053 26-115 (199)
371 KOG3347 Predicted nucleotide k 96.2 0.0041 8.8E-08 64.1 3.4 32 985-1016 8-39 (176)
372 TIGR03877 thermo_KaiC_1 KaiC d 96.2 0.041 9E-07 60.7 11.6 39 978-1017 16-57 (237)
373 PRK06581 DNA polymerase III su 96.1 0.11 2.5E-06 57.8 14.7 131 985-1134 16-163 (263)
374 TIGR01359 UMP_CMP_kin_fam UMP- 96.1 0.0046 1E-07 64.7 4.0 29 987-1015 2-30 (183)
375 PF04665 Pox_A32: Poxvirus A32 96.1 0.096 2.1E-06 58.4 14.4 133 983-1132 12-170 (241)
376 cd01393 recA_like RecA is a b 96.1 0.032 6.9E-07 60.4 10.4 35 985-1019 20-63 (226)
377 PRK14722 flhF flagellar biosyn 96.1 0.015 3.3E-07 68.5 8.3 108 985-1106 138-266 (374)
378 PRK06762 hypothetical protein; 96.1 0.014 3.1E-07 60.2 7.3 37 985-1021 3-39 (166)
379 PHA02624 large T antigen; Prov 96.1 0.03 6.4E-07 69.2 10.9 119 985-1118 432-561 (647)
380 cd01122 GP4d_helicase GP4d_hel 96.1 0.049 1.1E-06 60.8 12.0 35 983-1017 29-67 (271)
381 PRK12723 flagellar biosynthesi 96.1 0.035 7.6E-07 65.9 11.2 160 984-1157 174-374 (388)
382 PRK05973 replicative DNA helic 96.1 0.043 9.3E-07 61.1 11.2 37 982-1018 62-101 (237)
383 cd02020 CMPK Cytidine monophos 96.1 0.0056 1.2E-07 61.2 3.9 30 987-1016 2-31 (147)
384 PRK04040 adenylate kinase; Pro 96.0 0.044 9.6E-07 58.7 10.8 31 985-1015 3-35 (188)
385 TIGR02533 type_II_gspE general 96.0 0.023 4.9E-07 69.4 9.7 94 945-1053 218-321 (486)
386 COG0703 AroK Shikimate kinase 96.0 0.005 1.1E-07 65.1 3.6 32 985-1016 3-34 (172)
387 cd01428 ADK Adenylate kinase ( 96.0 0.0054 1.2E-07 64.5 3.9 29 987-1015 2-30 (194)
388 cd02021 GntK Gluconate kinase 96.0 0.0057 1.2E-07 62.0 3.9 30 987-1016 2-31 (150)
389 PRK09354 recA recombinase A; P 96.0 0.041 8.8E-07 64.4 11.1 73 985-1057 61-152 (349)
390 PF07693 KAP_NTPase: KAP famil 96.0 0.47 1E-05 54.2 19.7 78 1043-1134 172-265 (325)
391 TIGR01420 pilT_fam pilus retra 96.0 0.013 2.9E-07 68.2 7.2 69 985-1053 123-205 (343)
392 PF13479 AAA_24: AAA domain 96.0 0.025 5.5E-07 61.4 8.7 68 985-1056 4-81 (213)
393 COG2804 PulE Type II secretory 96.0 0.02 4.4E-07 69.0 8.5 97 943-1054 232-338 (500)
394 PRK14531 adenylate kinase; Pro 96.0 0.0074 1.6E-07 63.9 4.4 31 985-1015 3-33 (183)
395 PRK10436 hypothetical protein; 95.9 0.024 5.2E-07 68.7 9.2 94 945-1053 194-297 (462)
396 PRK14530 adenylate kinase; Pro 95.9 0.0073 1.6E-07 65.4 4.4 31 985-1015 4-34 (215)
397 KOG3928 Mitochondrial ribosome 95.9 0.17 3.7E-06 59.8 15.2 114 1044-1163 316-458 (461)
398 PRK03731 aroL shikimate kinase 95.9 0.0087 1.9E-07 62.1 4.4 32 985-1016 3-34 (171)
399 cd00046 DEXDc DEAD-like helica 95.8 0.016 3.6E-07 55.5 5.9 23 986-1008 2-24 (144)
400 COG5245 DYN1 Dynein, heavy cha 95.8 0.044 9.5E-07 71.9 10.9 138 984-1134 1494-1660(3164)
401 COG0563 Adk Adenylate kinase a 95.8 0.0092 2E-07 63.5 4.4 28 986-1013 2-29 (178)
402 TIGR03878 thermo_KaiC_2 KaiC d 95.8 0.077 1.7E-06 59.6 11.9 33 985-1017 37-72 (259)
403 TIGR02538 type_IV_pilB type IV 95.8 0.027 5.9E-07 69.9 9.1 94 945-1053 292-395 (564)
404 PRK08154 anaerobic benzoate ca 95.8 0.013 2.7E-07 67.5 5.7 37 980-1016 129-165 (309)
405 TIGR02782 TrbB_P P-type conjug 95.8 0.018 4E-07 66.0 6.9 69 985-1053 133-214 (299)
406 TIGR01313 therm_gnt_kin carboh 95.8 0.0076 1.6E-07 62.1 3.4 29 987-1015 1-29 (163)
407 TIGR00064 ftsY signal recognit 95.7 0.24 5.1E-06 56.3 15.6 73 983-1055 71-166 (272)
408 PRK13946 shikimate kinase; Pro 95.7 0.0089 1.9E-07 63.3 3.9 33 985-1017 11-43 (184)
409 PTZ00088 adenylate kinase 1; P 95.7 0.0097 2.1E-07 65.7 4.3 32 985-1016 7-38 (229)
410 PRK14730 coaE dephospho-CoA ki 95.7 0.035 7.6E-07 59.7 8.4 31 986-1016 3-33 (195)
411 smart00487 DEXDc DEAD-like hel 95.7 0.057 1.2E-06 55.1 9.6 24 985-1008 25-49 (201)
412 TIGR02525 plasmid_TraJ plasmid 95.7 0.02 4.3E-07 67.6 7.0 68 986-1053 151-235 (372)
413 cd01123 Rad51_DMC1_radA Rad51_ 95.7 0.047 1E-06 59.5 9.3 35 985-1019 20-63 (235)
414 PF10236 DAP3: Mitochondrial r 95.6 0.83 1.8E-05 52.9 19.8 116 1043-1159 156-307 (309)
415 COG4619 ABC-type uncharacteriz 95.6 0.066 1.4E-06 56.6 9.7 26 983-1008 28-53 (223)
416 cd00227 CPT Chloramphenicol (C 95.6 0.0098 2.1E-07 62.3 3.8 35 985-1019 3-37 (175)
417 PF00448 SRP54: SRP54-type pro 95.6 0.088 1.9E-06 56.9 11.0 128 985-1124 2-155 (196)
418 PRK13764 ATPase; Provisional 95.6 0.022 4.8E-07 70.8 7.2 68 985-1053 258-334 (602)
419 cd03281 ABC_MSH5_euk MutS5 hom 95.6 0.11 2.3E-06 56.8 11.7 21 985-1005 30-50 (213)
420 COG1485 Predicted ATPase [Gene 95.6 0.052 1.1E-06 63.0 9.6 30 981-1010 62-91 (367)
421 PRK05057 aroK shikimate kinase 95.6 0.013 2.7E-07 61.8 4.3 33 985-1017 5-37 (172)
422 smart00534 MUTSac ATPase domai 95.6 0.12 2.6E-06 54.9 11.8 19 987-1005 2-20 (185)
423 PRK14528 adenylate kinase; Pro 95.6 0.012 2.6E-07 62.6 4.2 31 985-1015 2-32 (186)
424 cd03280 ABC_MutS2 MutS2 homolo 95.6 0.097 2.1E-06 56.2 11.1 21 985-1005 29-49 (200)
425 cd02019 NK Nucleoside/nucleoti 95.5 0.039 8.5E-07 49.4 6.8 30 987-1016 2-32 (69)
426 PRK06547 hypothetical protein; 95.5 0.014 3.1E-07 61.6 4.5 34 983-1016 14-47 (172)
427 PRK02496 adk adenylate kinase; 95.5 0.012 2.7E-07 61.9 4.0 31 985-1015 2-32 (184)
428 PF05272 VirE: Virulence-assoc 95.5 0.026 5.7E-07 61.1 6.5 112 985-1118 53-169 (198)
429 TIGR03574 selen_PSTK L-seryl-t 95.5 0.026 5.7E-07 62.5 6.7 34 987-1020 2-38 (249)
430 cd03115 SRP The signal recogni 95.5 0.12 2.7E-06 53.7 11.3 68 987-1054 3-93 (173)
431 KOG0245 Kinesin-like protein [ 95.5 0.033 7.2E-07 70.9 7.9 80 151-237 476-558 (1221)
432 cd02027 APSK Adenosine 5'-phos 95.4 0.037 8.1E-07 56.8 7.1 33 987-1019 2-37 (149)
433 PRK11889 flhF flagellar biosyn 95.4 0.096 2.1E-06 62.2 11.3 72 984-1055 241-332 (436)
434 PRK13900 type IV secretion sys 95.4 0.025 5.4E-07 65.8 6.5 69 985-1053 161-245 (332)
435 TIGR01360 aden_kin_iso1 adenyl 95.4 0.015 3.2E-07 60.8 4.2 31 985-1015 4-34 (188)
436 COG1066 Sms Predicted ATP-depe 95.4 0.11 2.4E-06 61.5 11.3 96 983-1078 92-205 (456)
437 PF13481 AAA_25: AAA domain; P 95.4 0.076 1.6E-06 55.9 9.3 73 986-1058 34-156 (193)
438 TIGR01351 adk adenylate kinase 95.3 0.014 3.1E-07 63.0 3.9 29 987-1015 2-30 (210)
439 PRK10416 signal recognition pa 95.3 0.33 7.1E-06 56.4 15.2 73 983-1055 113-208 (318)
440 cd01130 VirB11-like_ATPase Typ 95.3 0.039 8.4E-07 58.6 7.1 69 985-1053 26-110 (186)
441 PRK00279 adk adenylate kinase; 95.3 0.016 3.4E-07 62.8 4.2 30 986-1015 2-31 (215)
442 cd02022 DPCK Dephospho-coenzym 95.3 0.042 9.2E-07 58.0 7.3 29 987-1016 2-30 (179)
443 PRK04328 hypothetical protein; 95.3 0.16 3.5E-06 56.6 12.1 35 983-1017 22-59 (249)
444 cd03243 ABC_MutS_homologs The 95.3 0.16 3.5E-06 54.5 11.7 21 985-1005 30-50 (202)
445 PLN02200 adenylate kinase fami 95.3 0.02 4.3E-07 63.5 4.8 36 984-1021 43-78 (234)
446 TIGR03880 KaiC_arch_3 KaiC dom 95.2 0.16 3.5E-06 55.2 11.7 35 984-1018 16-53 (224)
447 PF13238 AAA_18: AAA domain; P 95.2 0.015 3.2E-07 56.4 3.3 22 987-1008 1-22 (129)
448 TIGR00763 lon ATP-dependent pr 95.2 0.013 2.8E-07 75.4 3.4 99 645-748 349-474 (775)
449 COG2909 MalT ATP-dependent tra 95.1 0.22 4.9E-06 63.3 13.6 155 985-1156 38-229 (894)
450 PRK10263 DNA translocase FtsK; 95.1 0.17 3.7E-06 67.2 13.0 75 1045-1130 1142-1218(1355)
451 TIGR02788 VirB11 P-type DNA tr 95.0 0.035 7.6E-07 63.8 6.1 69 985-1053 145-228 (308)
452 COG4088 Predicted nucleotide k 95.0 0.08 1.7E-06 57.6 8.2 23 986-1008 3-25 (261)
453 TIGR03881 KaiC_arch_4 KaiC dom 95.0 0.19 4.1E-06 54.8 11.4 35 983-1017 19-56 (229)
454 PF01745 IPT: Isopentenyl tran 95.0 0.024 5.2E-07 61.9 4.3 36 986-1021 3-38 (233)
455 cd01125 repA Hexameric Replica 95.0 0.34 7.3E-06 53.5 13.4 21 987-1007 4-24 (239)
456 PRK13894 conjugal transfer ATP 95.0 0.048 1E-06 63.2 6.9 69 985-1053 149-229 (319)
457 PRK04182 cytidylate kinase; Pr 95.0 0.023 5E-07 58.8 4.0 30 986-1015 2-31 (180)
458 PRK14527 adenylate kinase; Pro 94.9 0.022 4.8E-07 60.5 3.9 31 985-1015 7-37 (191)
459 PF01583 APS_kinase: Adenylyls 94.9 0.053 1.1E-06 56.7 6.5 38 985-1022 3-43 (156)
460 COG1102 Cmk Cytidylate kinase 94.9 0.022 4.8E-07 59.6 3.6 28 987-1014 3-30 (179)
461 PF06414 Zeta_toxin: Zeta toxi 94.9 0.078 1.7E-06 56.9 8.0 40 983-1022 14-54 (199)
462 PRK13851 type IV secretion sys 94.9 0.034 7.4E-07 65.0 5.6 69 985-1053 163-246 (344)
463 COG2805 PilT Tfp pilus assembl 94.9 0.058 1.2E-06 61.5 7.0 71 985-1055 125-210 (353)
464 PF09848 DUF2075: Uncharacteri 94.9 0.034 7.4E-07 65.0 5.6 23 986-1008 3-25 (352)
465 TIGR01448 recD_rel helicase, p 94.9 0.12 2.7E-06 66.0 10.9 99 986-1101 340-457 (720)
466 PRK13833 conjugal transfer pro 94.9 0.051 1.1E-06 63.0 6.9 69 985-1053 145-225 (323)
467 PRK01184 hypothetical protein; 94.8 0.025 5.4E-07 59.5 3.9 29 986-1015 3-31 (184)
468 cd03216 ABC_Carb_Monos_I This 94.8 0.12 2.7E-06 53.7 8.9 71 983-1053 25-110 (163)
469 PRK04301 radA DNA repair and r 94.8 0.11 2.4E-06 60.0 9.4 35 985-1019 103-146 (317)
470 PF08298 AAA_PrkA: PrkA AAA do 94.8 0.079 1.7E-06 61.8 8.1 59 950-1016 62-121 (358)
471 PF13086 AAA_11: AAA domain; P 94.8 0.036 7.7E-07 59.0 5.0 22 987-1008 20-41 (236)
472 TIGR00767 rho transcription te 94.8 0.084 1.8E-06 62.8 8.4 25 985-1009 169-193 (415)
473 TIGR02173 cyt_kin_arch cytidyl 94.8 0.028 6E-07 57.8 3.9 29 987-1015 3-31 (171)
474 TIGR01425 SRP54_euk signal rec 94.8 0.17 3.7E-06 60.8 11.0 73 983-1055 99-194 (429)
475 PRK12724 flagellar biosynthesi 94.7 0.27 5.9E-06 58.9 12.5 130 985-1124 224-374 (432)
476 cd03238 ABC_UvrA The excision 94.7 0.39 8.5E-06 51.1 12.6 25 983-1007 20-44 (176)
477 TIGR02881 spore_V_K stage V sp 94.7 0.11 2.4E-06 58.1 8.9 92 645-745 44-151 (261)
478 PRK09519 recA DNA recombinatio 94.7 0.19 4.1E-06 64.4 11.8 73 985-1057 61-152 (790)
479 TIGR02655 circ_KaiC circadian 94.7 0.16 3.6E-06 62.0 10.9 73 984-1056 263-366 (484)
480 TIGR02236 recomb_radA DNA repa 94.7 0.18 3.8E-06 57.9 10.5 35 985-1019 96-139 (310)
481 PLN02674 adenylate kinase 94.7 0.032 6.9E-07 62.3 4.3 32 984-1015 31-62 (244)
482 PTZ00202 tuzin; Provisional 94.6 0.52 1.1E-05 56.8 14.3 60 948-1018 261-320 (550)
483 TIGR03499 FlhF flagellar biosy 94.6 0.16 3.5E-06 57.8 10.0 36 984-1019 194-234 (282)
484 PF00406 ADK: Adenylate kinase 94.6 0.03 6.5E-07 57.2 3.7 32 989-1022 1-32 (151)
485 PHA02530 pseT polynucleotide k 94.6 0.031 6.8E-07 63.3 4.1 32 985-1016 3-35 (300)
486 PRK06696 uridine kinase; Valid 94.6 0.039 8.4E-07 60.3 4.7 37 985-1021 23-62 (223)
487 COG1936 Predicted nucleotide k 94.6 0.026 5.6E-07 59.7 3.1 30 986-1016 2-31 (180)
488 PF02562 PhoH: PhoH-like prote 94.5 0.062 1.3E-06 58.6 5.9 24 985-1008 20-43 (205)
489 PF13521 AAA_28: AAA domain; P 94.5 0.035 7.5E-07 57.3 3.8 27 986-1013 1-27 (163)
490 PRK10867 signal recognition pa 94.5 0.35 7.5E-06 58.4 12.7 73 983-1055 99-195 (433)
491 PRK12608 transcription termina 94.3 0.094 2E-06 61.9 7.3 24 985-1008 134-157 (380)
492 PRK14526 adenylate kinase; Pro 94.3 0.043 9.4E-07 59.9 4.2 29 986-1014 2-30 (211)
493 PF08433 KTI12: Chromatin asso 94.3 0.089 1.9E-06 59.7 6.8 68 987-1055 4-82 (270)
494 TIGR01613 primase_Cterm phage/ 94.2 0.14 3.1E-06 58.7 8.5 85 954-1053 54-138 (304)
495 PRK00889 adenylylsulfate kinas 94.2 0.15 3.2E-06 53.3 7.9 35 985-1019 5-42 (175)
496 cd03227 ABC_Class2 ABC-type Cl 94.2 0.42 9E-06 49.7 11.1 22 985-1006 22-43 (162)
497 TIGR01526 nadR_NMN_Atrans nico 94.2 0.081 1.7E-06 61.5 6.3 34 985-1018 163-196 (325)
498 PLN02199 shikimate kinase 94.2 0.048 1E-06 62.4 4.4 32 985-1016 103-134 (303)
499 TIGR02524 dot_icm_DotB Dot/Icm 94.2 0.097 2.1E-06 61.6 7.0 69 985-1053 135-222 (358)
500 PF08423 Rad51: Rad51; InterP 94.1 0.12 2.7E-06 57.9 7.6 110 986-1097 40-186 (256)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-61 Score=551.72 Aligned_cols=445 Identities=33% Similarity=0.470 Sum_probs=362.2
Q ss_pred eeeecCCCCCCCCCCCCCCCCCC--cccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhc----
Q 001076 645 GVRFDRSIPEGNNLGGFCEDDHG--FFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT---- 718 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~~~c~~~~~--ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La---- 718 (1163)
||+||+|++.|+|.-+..--++- .|+...+-.+ .|+..|++|..|++||+.+.+ +.|.||||||||. ++
T Consensus 225 GvLlHGPPGCGKT~lA~AiAgel~vPf~~isApei-vSGvSGESEkkiRelF~~A~~---~aPcivFiDeIDA-I~pkRe 299 (802)
T KOG0733|consen 225 GVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEI-VSGVSGESEKKIRELFDQAKS---NAPCIVFIDEIDA-ITPKRE 299 (802)
T ss_pred ceeeeCCCCccHHHHHHHHhhhcCCceEeecchhh-hcccCcccHHHHHHHHHHHhc---cCCeEEEeecccc-cccchh
Confidence 89999999999997643333332 4555544321 488999999999999999998 9999999999999 76
Q ss_pred -CChhhHHHHHHHHhcC---------CC-CEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCcccccccc
Q 001076 719 -GNNDAYGALKSKLENL---------PS-NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRS 787 (1163)
Q Consensus 719 -~~~~~~~~i~s~L~~L---------~g-~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~ 787 (1163)
.|.++..+|++.|+.. .| .|+|||||||+|+ |||
T Consensus 300 ~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDs----------------------lDp------------- 344 (802)
T KOG0733|consen 300 EAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDS----------------------LDP------------- 344 (802)
T ss_pred hHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcc----------------------cCH-------------
Confidence 3788999999998766 23 8999999996666 444
Q ss_pred ccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhh-hhcCCCCcccccchhhcccCCc
Q 001076 788 KETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLT 864 (1163)
Q Consensus 788 ~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~-l~~~~L~~vdLeeLa~~tkg~s 864 (1163)
|||| ||++++....|+...|.+||+|.-+ |+-.+ +.+...||.+|.||-
T Consensus 345 --------------------------aLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g--~~d~~qlA~lTPGfV 396 (802)
T KOG0733|consen 345 --------------------------ALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG--DFDFKQLAKLTPGFV 396 (802)
T ss_pred --------------------------HHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC--CcCHHHHHhcCCCcc
Confidence 8999 9999999999999999999999876 55544 788999999999999
Q ss_pred hhhhhhHHhHHhhhhhhhcCCCCCC-CCccc-----------ccccchhhhHH-----HH----Hh-hhhhhhhhhhhhh
Q 001076 865 TEGVEKIVGWALSHHFMHCSEAPGK-DAKLK-----------ISTESIMYGLN-----IL----QG-IQSESKSLKKSLK 922 (1163)
Q Consensus 865 gadIe~Lv~~Aas~Al~r~~~qi~~-~~kl~-----------Id~~sI~v~~~-----dF----~~-al~eikp~~~slk 922 (1163)
|||+.+||.+|+..|+.|..++... ..+.. .+..+|+.... +. +. +++...+......
T Consensus 397 GADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~ 476 (802)
T KOG0733|consen 397 GADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELL 476 (802)
T ss_pred chhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHh
Confidence 9999999999999999998764431 11111 11111221000 00 00 0111111111111
Q ss_pred c--ccchhHHHHHHhcCCCCC-------CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCC
Q 001076 923 D--VVTENEFEKKLLADVIPP-------SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPP 993 (1163)
Q Consensus 923 ~--lv~~~e~ek~ll~~iip~-------~e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPP 993 (1163)
+ .+..++|+..+. .+-|. .-++++|+||+++++++.+|..+|.+|+++|+.|...|+.. +.||||||||
T Consensus 477 ~~L~i~~eDF~~Al~-~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~-PsGvLL~GPP 554 (802)
T KOG0733|consen 477 EGLSIKFEDFEEALS-KIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDA-PSGVLLCGPP 554 (802)
T ss_pred ccceecHHHHHHHHH-hcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCC-CCceEEeCCC
Confidence 1 123455665532 11111 12478999999999999999999999999999999999766 5899999999
Q ss_pred CChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHH
Q 001076 994 GTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN 1073 (1163)
Q Consensus 994 GTGKT~LArALA~eLg~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~ 1073 (1163)
|||||.||+|+|++.|++|+.+..++|+.+|+|++|..++++|+.|+...|||||+||||.|.++|.... .....+++|
T Consensus 555 GCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~-s~~s~RvvN 633 (802)
T KOG0733|consen 555 GCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG-SSVSSRVVN 633 (802)
T ss_pred CccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC-chhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998887654 667788999
Q ss_pred HHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHh--hCCCCChhhHHHHHHH
Q 001076 1074 EFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILA--KEELASDVDLEGIANM 1149 (1163)
Q Consensus 1074 ~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~--k~~l~~dvdl~~LA~~ 1149 (1163)
+||+.|||+.. +..|.|||+||+|+.+|++++| |||+.+++++|+.++|..||+.+.+ +..+.+|+|+++||+.
T Consensus 634 qLLtElDGl~~--R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~ 711 (802)
T KOG0733|consen 634 QLLTELDGLEE--RRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARN 711 (802)
T ss_pred HHHHHhccccc--ccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc
Confidence 99999999864 4789999999999999999999 9999999999999999999999999 7788999999999998
Q ss_pred cC--CCCHHHHHhhc
Q 001076 1150 AD--GYSGSDLKVDY 1162 (1163)
Q Consensus 1150 Te--GySgaDLk~Lv 1162 (1163)
+. ||||+||..||
T Consensus 712 ~~c~gftGADLaaLv 726 (802)
T KOG0733|consen 712 TKCEGFTGADLAALV 726 (802)
T ss_pred ccccCCchhhHHHHH
Confidence 87 99999999987
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-57 Score=527.36 Aligned_cols=407 Identities=30% Similarity=0.494 Sum_probs=350.2
Q ss_pred eeeecCCCCCCCCCCCCCC-CCCC--ccccc-ccccccCCCcchhhHHHHHHHHHHHHhhccCC-CeEEEEcchhhhhc-
Q 001076 645 GVRFDRSIPEGNNLGGFCE-DDHG--FFCTA-SSLRLDSSLGDEVDKLAINELFEVALNESKSS-PLIVFVKDIEKSLT- 718 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~~~c~-~~~~--ff~~~-~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~-P~IIffddid~~La- 718 (1163)
|+.-..|+++|+++-..|- +.++ ||+-- +.+ +++..++.+--|+..|+.... ++ |+|||+||||. |+
T Consensus 220 g~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~pel---i~k~~gEte~~LR~~f~~a~k---~~~psii~IdEld~-l~p 292 (693)
T KOG0730|consen 220 GLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPEL---ISKFPGETESNLRKAFAEALK---FQVPSIIFIDELDA-LCP 292 (693)
T ss_pred CccccCCCCCChHHHHHHHHHHhCceeEecccHHH---HHhcccchHHHHHHHHHHHhc---cCCCeeEeHHhHhh-hCC
Confidence 3445568899999873321 1112 33322 233 477789999999999998877 88 99999999999 66
Q ss_pred CC---hhhHHHHHHHHhcC------CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCcccccccccc
Q 001076 719 GN---NDAYGALKSKLENL------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKE 789 (1163)
Q Consensus 719 ~~---~~~~~~i~s~L~~L------~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~ 789 (1163)
+| .....++++.|..| .++||||+++|++++ |||
T Consensus 293 ~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~s----------------------ld~--------------- 335 (693)
T KOG0730|consen 293 KREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDS----------------------LDP--------------- 335 (693)
T ss_pred cccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccc----------------------cCh---------------
Confidence 32 22567888888877 469999999996665 444
Q ss_pred chHHHHHhhhccccceeecCCchhHHHH-HHHHHHHHhhhhhhccchhhHHHhh-hhcCCCCcccccchhhcccCCchhh
Q 001076 790 TPKALKQISRLFPNKVTIQLPQDEALLS-DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEG 867 (1163)
Q Consensus 790 ~~~~~~~l~~lf~~~i~i~~P~DeALlR-Rferq~e~~LpdlkgR~~Il~IHT~-l~~~~L~~vdLeeLa~~tkg~sgad 867 (1163)
++|| ||++++++..|+..+|.+|+++|+. |... ++++|..+|..+.||.|+|
T Consensus 336 ------------------------alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~--~~~~l~~iA~~thGyvGaD 389 (693)
T KOG0730|consen 336 ------------------------ALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL--SDVDLEDIAVSTHGYVGAD 389 (693)
T ss_pred ------------------------hhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc--chhhHHHHHHHccchhHHH
Confidence 8888 9999999999999999999999998 4443 7899999999999999999
Q ss_pred hhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhhhhhhhhhhhhhhcccchhHHHHHHhcCCCCCCCCCCC
Q 001076 868 VEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVT 947 (1163)
Q Consensus 868 Ie~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~dF~~al~eikp~~~slk~lv~~~e~ek~ll~~iip~~e~~~t 947 (1163)
+..+|++|+..++++ ...+|+.++..+.|..- ..++ .+-++++
T Consensus 390 L~~l~~ea~~~~~r~--------------------~~~~~~~A~~~i~psa~----------------Re~~-ve~p~v~ 432 (693)
T KOG0730|consen 390 LAALCREASLQATRR--------------------TLEIFQEALMGIRPSAL----------------REIL-VEMPNVS 432 (693)
T ss_pred HHHHHHHHHHHHhhh--------------------hHHHHHHHHhcCCchhh----------------hhee-ccCCCCC
Confidence 999999999999876 45677777666544211 0011 2334789
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccc
Q 001076 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGE 1027 (1163)
Q Consensus 948 fddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~Ge 1027 (1163)
|+||+|++++|++|.+.|.+|+.+|+.|.+.++ .|++|||||||||||||++|+++|++.+++|+.+.+++++++|+|+
T Consensus 433 W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi-~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGe 511 (693)
T KOG0730|consen 433 WDDIGGLEELKRELQQAVEWPLKHPEKFARFGI-SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGE 511 (693)
T ss_pred hhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC-CCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCc
Confidence 999999999999999999999999999999885 5669999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHH
Q 001076 1028 GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVV 1107 (1163)
Q Consensus 1028 ~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLl 1107 (1163)
+|..++++|+.|+..+|+|||+||||.+.+.|+.... .+..+++++||.+|||+... .+|+|||+||+|+.||++++
T Consensus 512 SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~-~v~~RVlsqLLtEmDG~e~~--k~V~ViAATNRpd~ID~ALl 588 (693)
T KOG0730|consen 512 SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS-GVTDRVLSQLLTEMDGLEAL--KNVLVIAATNRPDMIDPALL 588 (693)
T ss_pred hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc-chHHHHHHHHHHHccccccc--CcEEEEeccCChhhcCHHHc
Confidence 9999999999999999999999999999998874433 78899999999999999754 68999999999999999999
Q ss_pred h--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1108 R--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1108 r--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
| |||+.|+|++|+.+.|.+||+.+++++++.+++|++.||+.|+||||+||..+|
T Consensus 589 RPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lC 645 (693)
T KOG0730|consen 589 RPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVC 645 (693)
T ss_pred CCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHH
Confidence 9 999999999999999999999999999999999999999999999999999998
No 3
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-46 Score=417.57 Aligned_cols=298 Identities=62% Similarity=0.980 Sum_probs=274.2
Q ss_pred cccCCchhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhhhhhhhhhhhhhhc-ccchhHHHHHHhcC
Q 001076 859 KDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKD-VVTENEFEKKLLAD 937 (1163)
Q Consensus 859 ~tkg~sgadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~dF~~al~eikp~~~slk~-lv~~~e~ek~ll~~ 937 (1163)
.+..+...-++.++.+|.+|++.++..+.+.. ...+..+++.++..+|++.... .++++ ++..++++..+...
T Consensus 7 ~~~~~i~~~~~~i~~~A~~~~~~~~~~~~~d~-~~~~~~eS~~~~~~~l~~~~~~-----~s~k~~~i~~ne~E~~i~s~ 80 (386)
T KOG0737|consen 7 KDDVLITSLIRKIVAAAISHHLVHLLVPRLDP-NLKASRESLEKTEELLKNLEAE-----LSLKYRIIQKNEYEKRIASD 80 (386)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhccccccCh-hhhhhHHHHHHHHHHHHhhhhc-----cchhhhhhhhhHHHHHhhhc
Confidence 34445566788899999999988664433333 6778888888888888766433 34443 67889999999999
Q ss_pred CCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001076 938 VIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1163)
Q Consensus 938 iip~~e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~ 1017 (1163)
++++.++.++|+||+|++.+++++.+.+.+|+++|++|..+++.+|++||||+||||||||+||+|+|++.|.+|+.+.+
T Consensus 81 ~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~ 160 (386)
T KOG0737|consen 81 VVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSV 160 (386)
T ss_pred ccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeC
Q 001076 1018 SSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1097 (1163)
Q Consensus 1018 seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN 1097 (1163)
+.++++|+|+.++.++.+|..|.+.+|+||||||||.+++.| ....|++...+.++||.+|||+..+.+.+|+|+|+||
T Consensus 161 s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN 239 (386)
T KOG0737|consen 161 SNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN 239 (386)
T ss_pred cccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC
Confidence 999999999999999999999999999999999999999999 6789999999999999999999999888999999999
Q ss_pred CCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhcC
Q 001076 1098 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDYT 1163 (1163)
Q Consensus 1098 ~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lvt 1163 (1163)
+|.+||++++||++++++|++|+.++|.+|++.++++.++.+++|+.++|.+|+||||+||+++|.
T Consensus 240 RP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~ 305 (386)
T KOG0737|consen 240 RPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCR 305 (386)
T ss_pred CCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999984
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.6e-45 Score=458.32 Aligned_cols=430 Identities=30% Similarity=0.474 Sum_probs=343.0
Q ss_pred eeeecCCCCCCCCCCC--CCCCCCCccccc-ccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcCC-
Q 001076 645 GVRFDRSIPEGNNLGG--FCEDDHGFFCTA-SSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN- 720 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~~--~c~~~~~ff~~~-~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~~- 720 (1163)
||.|.+|.|+||++.. .|..-...|... +..- .++|.++.+..++.+|+.+.. +.|.||||||||.+...+
T Consensus 214 giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i--~~~~~g~~~~~l~~lf~~a~~---~~p~il~iDEid~l~~~r~ 288 (733)
T TIGR01243 214 GVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEI--MSKYYGESEERLREIFKEAEE---NAPSIIFIDEIDAIAPKRE 288 (733)
T ss_pred eEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHH--hcccccHHHHHHHHHHHHHHh---cCCcEEEeehhhhhccccc
Confidence 6888899999999762 122112222222 1111 367888888889999988766 889999999999954432
Q ss_pred ---hhhHHHHHHHHhc----C--CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCccccccccccch
Q 001076 721 ---NDAYGALKSKLEN----L--PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETP 791 (1163)
Q Consensus 721 ---~~~~~~i~s~L~~----L--~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~~ 791 (1163)
.+....++..|.. + ++.|+|||++|+++. |||
T Consensus 289 ~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~----------------------ld~----------------- 329 (733)
T TIGR01243 289 EVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDA----------------------LDP----------------- 329 (733)
T ss_pred CCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhh----------------------cCH-----------------
Confidence 2333444444433 3 468999999995443 333
Q ss_pred HHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhhhhcCCC-CcccccchhhcccCCchhhh
Q 001076 792 KALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGV 868 (1163)
Q Consensus 792 ~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~sgadI 868 (1163)
+++| ||++++++++|+.+.|..|+++|+.. -.+ .+++++.++..+.||.+++|
T Consensus 330 ----------------------al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~--~~l~~d~~l~~la~~t~G~~gadl 385 (733)
T TIGR01243 330 ----------------------ALRRPGRFDREIVIRVPDKRARKEILKVHTRN--MPLAEDVDLDKLAEVTHGFVGADL 385 (733)
T ss_pred ----------------------HHhCchhccEEEEeCCcCHHHHHHHHHHHhcC--CCCccccCHHHHHHhCCCCCHHHH
Confidence 7777 99999999999999999999998751 223 57889999999999999999
Q ss_pred hhHHhHHhhhhhhhcCCCCCCC-Cccccc---ccchhhhHHHHHhhhhhhhhhhhhhhcccchhHHHHHHhcCCCCCCCC
Q 001076 869 EKIVGWALSHHFMHCSEAPGKD-AKLKIS---TESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDI 944 (1163)
Q Consensus 869 e~Lv~~Aas~Al~r~~~qi~~~-~kl~Id---~~sI~v~~~dF~~al~eikp~~~slk~lv~~~e~ek~ll~~iip~~e~ 944 (1163)
..+|..|+..+++|..+....+ ....+. ...+.+...+|..++..+.|... . ..+ ....
T Consensus 386 ~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~--~--------------~~~-~~~~ 448 (733)
T TIGR01243 386 AALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAI--R--------------EVL-VEVP 448 (733)
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhcccccc--c--------------hhh-cccc
Confidence 9999999999998764311100 000111 13345677888887766654221 0 000 0112
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~ 1024 (1163)
..+|++|+|++.+++.|.+.+.+|+.+++.|.+.++ ++++++|||||||||||++|+++|++++++|+.++++++.++|
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~-~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGI-RPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKW 527 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCC-CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcc
Confidence 568999999999999999999999999999998875 4568999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCH
Q 001076 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1104 (1163)
Q Consensus 1025 ~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~ 1104 (1163)
+|++++.++.+|..|+...|+||||||||.|++.+..........+++++|+..|+++.. ..+++||+|||+++.||+
T Consensus 528 vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~--~~~v~vI~aTn~~~~ld~ 605 (733)
T TIGR01243 528 VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQE--LSNVVVIAATNRPDILDP 605 (733)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccC--CCCEEEEEeCCChhhCCH
Confidence 999999999999999999999999999999998776554455677899999999999754 367999999999999999
Q ss_pred HHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1105 AVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1105 aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
+++| ||+++|++++|+.++|.+||+.+..+..+..++++..||+.|+||||+||+.+|
T Consensus 606 allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~ 665 (733)
T TIGR01243 606 ALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVC 665 (733)
T ss_pred hhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHH
Confidence 9998 999999999999999999999999998888999999999999999999999887
No 5
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-44 Score=428.08 Aligned_cols=419 Identities=33% Similarity=0.494 Sum_probs=348.1
Q ss_pred eeeecCCCCCCCCCCC--CCCCCCCcccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcC---
Q 001076 645 GVRFDRSIPEGNNLGG--FCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--- 719 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~~--~c~~~~~ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~--- 719 (1163)
||.++.|.++|+++.+ .+.....|+-..+..+ +++|.++.++.++.+|+.+.. .+|.|+|+||+|.+...
T Consensus 20 ~v~~~g~~~~~~t~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~---~~~~ii~~d~~~~~~~~~~~ 94 (494)
T COG0464 20 GVLLHGPPGTGKTLLARALANEGAEFLSINGPEI--LSKYVGESELRLRELFEEAEK---LAPSIIFIDEIDALAPKRSS 94 (494)
T ss_pred CceeeCCCCCchhHHHHHHHhccCcccccCcchh--hhhhhhHHHHHHHHHHHHHHH---hCCCeEeechhhhcccCccc
Confidence 6888899999999982 2222222444445555 899999999999999999888 88899999999996653
Q ss_pred -ChhhHHHHHHHHhcC-----CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCccccccccccchHH
Q 001076 720 -NNDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKA 793 (1163)
Q Consensus 720 -~~~~~~~i~s~L~~L-----~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~~~~ 793 (1163)
+.+.+..+++.|..+ +++|++|+.+++.+. +|+
T Consensus 95 ~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~~----------------------~~~------------------- 133 (494)
T COG0464 95 DQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPDG----------------------LDP------------------- 133 (494)
T ss_pred cccchhhHHHHHHHHhcccccCCceEEEeecCCccc----------------------cCh-------------------
Confidence 345666777777666 456888887774443 332
Q ss_pred HHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhhhhcCCCCcccccchhhcccCCchhhhhhH
Q 001076 794 LKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKI 871 (1163)
Q Consensus 794 ~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~l~~~~L~~vdLeeLa~~tkg~sgadIe~L 871 (1163)
+++| ||++++++.+|+..+|..|+++|+.++.... ..++..++..+.+|.++++..+
T Consensus 134 --------------------a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~l 192 (494)
T COG0464 134 --------------------AKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGP-PGTGKTLAARTVGKSGADLGAL 192 (494)
T ss_pred --------------------hHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCcc-cccHHHHHHhcCCccHHHHHHH
Confidence 6767 9999999999999999999999998443322 7889999999999999999999
Q ss_pred HhHHhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhhhhhhhhhhhhhhcccchhHHHHHHhcCCCCCCCCCCCcccc
Q 001076 872 VGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDI 951 (1163)
Q Consensus 872 v~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~dF~~al~eikp~~~slk~lv~~~e~ek~ll~~iip~~e~~~tfddI 951 (1163)
|+.+...+++|.. ......+.+...+|..++.++.+. ..+......++|+++
T Consensus 193 ~~~~~~~~~~r~~---------~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~~~~v~~~di 244 (494)
T COG0464 193 AKEAALRELRRAI---------DLVGEYIGVTEDDFEEALKKVLPS-------------------RGVLFEDEDVTLDDI 244 (494)
T ss_pred HHHHHHHHHHhhh---------ccCcccccccHHHHHHHHHhcCcc-------------------cccccCCCCcceehh
Confidence 9999999998753 233445566667776665554331 011223446889999
Q ss_pred cCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHH
Q 001076 952 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKY 1031 (1163)
Q Consensus 952 ~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~Ge~E~~ 1031 (1163)
+|++..++.+.+.+.+++.+++.|.+.+ .++++++||+||||||||+||+++|++++.+|+.++.++++++|+|++++.
T Consensus 245 ggl~~~k~~l~e~v~~~~~~~e~~~~~~-~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ 323 (494)
T COG0464 245 GGLEEAKEELKEAIETPLKRPELFRKLG-LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKN 323 (494)
T ss_pred hcHHHHHHHHHHHHHhHhhChHHHHhcC-CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHH
Confidence 9999999999999999999999998755 456689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHh--c
Q 001076 1032 VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--R 1109 (1163)
Q Consensus 1032 Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--R 1109 (1163)
++.+|..|++..||||||||||.|+..+..... ....+++++|+..|+++... .+|+||+|||+|+.+|++++| |
T Consensus 324 ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~-~~~~r~~~~lL~~~d~~e~~--~~v~vi~aTN~p~~ld~a~lR~gR 400 (494)
T COG0464 324 IRELFEKARKLAPSIIFIDEIDSLASGRGPSED-GSGRRVVGQLLTELDGIEKA--EGVLVIAATNRPDDLDPALLRPGR 400 (494)
T ss_pred HHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc-hHHHHHHHHHHHHhcCCCcc--CceEEEecCCCccccCHhhcccCc
Confidence 999999999999999999999999987765332 22368999999999998654 679999999999999999999 9
Q ss_pred cCcEEEecCCCHHHHHHHHHHHHhhCC--CCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1110 LPRRLMVNLPDAPNREKIIRVILAKEE--LASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1110 Fd~vI~I~~Pd~eeR~eILk~ll~k~~--l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
|++.++|++|+.++|.+||+.++.... +..++++..+++.|+||+|+||..+|
T Consensus 401 fd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~ 455 (494)
T COG0464 401 FDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALV 455 (494)
T ss_pred cceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHH
Confidence 999999999999999999999998644 46889999999999999999999886
No 6
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-42 Score=409.94 Aligned_cols=432 Identities=26% Similarity=0.405 Sum_probs=331.1
Q ss_pred eeeeecCCCCCCCCCC--CCCCCCCCcccccccccccCCCcchhhHHHHHHHHHHHHhhcc-CCCeEEEEcchhhhhc-C
Q 001076 644 IGVRFDRSIPEGNNLG--GFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESK-SSPLIVFVKDIEKSLT-G 719 (1163)
Q Consensus 644 vgV~Fd~~~~~~~~l~--~~c~~~~~ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k-~~P~IIffddid~~La-~ 719 (1163)
..|..+++.+.||+.+ .-|+.-+..+ .+.+|++ .+.+.....+.=.+..+..+| .+|.|||+.+.|- |+ .
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~--~evdc~e---l~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dv-l~id 505 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHL--LEVDCYE---LVAESASHTETKLQAIFSRARRCSPAVLFLRNLDV-LGID 505 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCce--EeccHHH---HhhcccchhHHHHHHHHHHHhhcCceEEEEeccce-eeec
Confidence 3588899999999988 3344333322 2667755 344455555555566666666 8999999999999 55 2
Q ss_pred C-----hhhHHHHHHHHh-cC----CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCcccccccccc
Q 001076 720 N-----NDAYGALKSKLE-NL----PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKE 789 (1163)
Q Consensus 720 ~-----~~~~~~i~s~L~-~L----~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~ 789 (1163)
| -++.+.|.-.|. .+ .+++||||+++..++ |.+
T Consensus 506 ~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~----------------------lp~--------------- 548 (953)
T KOG0736|consen 506 QDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIED----------------------LPA--------------- 548 (953)
T ss_pred CCCchhHHHHHHHHHHHhcccccCCCCceEEEEecccccc----------------------CCH---------------
Confidence 2 123334443443 22 459999999996555 111
Q ss_pred chHHHHHhhhccccceeecCCchhHHHHHHHHHHHHhhhhhhccchhhHHHhhhhcCCC-CcccccchhhcccCCchhhh
Q 001076 790 TPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGV 868 (1163)
Q Consensus 790 ~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~LpdlkgR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~sgadI 868 (1163)
.+-.+|..+|++.+|.++.+++ |+++- .....+ .++.+..++.+|.||+-.++
T Consensus 549 ------~i~~~f~~ei~~~~lse~qRl~------------------iLq~y--~~~~~~n~~v~~k~~a~~t~gfs~~~L 602 (953)
T KOG0736|consen 549 ------DIQSLFLHEIEVPALSEEQRLE------------------ILQWY--LNHLPLNQDVNLKQLARKTSGFSFGDL 602 (953)
T ss_pred ------HHHHhhhhhccCCCCCHHHHHH------------------HHHHH--HhccccchHHHHHHHHHhcCCCCHHHH
Confidence 2445677777777777766654 33332 111223 67888899999999999999
Q ss_pred hhHHhHHhhhhhhhcCCCCC----C-CCcccccccchhhhHHHHHhhhhhhhhhhhhhhcccchhHHHHHHhcCCCCCCC
Q 001076 869 EKIVGWALSHHFMHCSEAPG----K-DAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSD 943 (1163)
Q Consensus 869 e~Lv~~Aas~Al~r~~~qi~----~-~~kl~Id~~sI~v~~~dF~~al~eikp~~~slk~lv~~~e~ek~ll~~iip~~e 943 (1163)
+.++..+...+..+-....+ . ...-.+-.....+...||-.++..++. ++ .+.+-.|.-
T Consensus 603 ~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~------------~f----s~aiGAPKI 666 (953)
T KOG0736|consen 603 EALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQK------------EF----SDAIGAPKI 666 (953)
T ss_pred HHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHH------------hh----hhhcCCCCC
Confidence 99988875555443221111 0 111122333355566666655444321 22 233445556
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 001076 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1163)
Q Consensus 944 ~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~ 1023 (1163)
++++|+||+|++++|.++.+.|.+|+.+|++|..+ .++..|||||||||||||.||+|+|.++..+|+.+..++|..+
T Consensus 667 PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssg--lrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM 744 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSG--LRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM 744 (953)
T ss_pred CccchhcccCHHHHHHHHHHHhcCcccChhhhhcc--ccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHH
Confidence 68999999999999999999999999999999876 4445699999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchH-HHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCC
Q 001076 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH-EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1102 (1163)
Q Consensus 1024 ~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~-eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~L 1102 (1163)
|+|++|+++|.+|+.|+...|||||+||+|+|.++|+..+.. ..+.++..+|+.+|||+.......|+||++||+|+.|
T Consensus 745 YVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLL 824 (953)
T KOG0736|consen 745 YVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLL 824 (953)
T ss_pred HhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcccc
Confidence 999999999999999999999999999999999999876543 4889999999999999987667899999999999999
Q ss_pred CHHHHh--ccCcEEEecCCC-HHHHHHHHHHHHhhCCCCChhhHHHHHHHcC-CCCHHHHHhhc
Q 001076 1103 DEAVVR--RLPRRLMVNLPD-APNREKIIRVILAKEELASDVDLEGIANMAD-GYSGSDLKVDY 1162 (1163)
Q Consensus 1103 d~aLlr--RFd~vI~I~~Pd-~eeR~eILk~ll~k~~l~~dvdl~~LA~~Te-GySgaDLk~Lv 1162 (1163)
|++++| |||+.+++.++. .+.+..+++.+.++..+..++|+.+||+.+. .|||+|+-.||
T Consensus 825 DpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLC 888 (953)
T KOG0736|consen 825 DPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLC 888 (953)
T ss_pred ChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHH
Confidence 999999 999999998875 7778999999999999999999999999998 89999999988
No 7
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-44 Score=441.34 Aligned_cols=414 Identities=19% Similarity=0.216 Sum_probs=305.2
Q ss_pred CeeeeccccCCCCceeeeecCCCCCCCCCC-----CCCCCCCC---cccccccccccCCCcchhhHHHHHHHHHHHHhhc
Q 001076 630 GRVILPFEDNDFSKIGVRFDRSIPEGNNLG-----GFCEDDHG---FFCTASSLRLDSSLGDEVDKLAINELFEVALNES 701 (1163)
Q Consensus 630 g~v~~~~e~n~~~kvgV~Fd~~~~~~~~l~-----~~c~~~~~---ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~ 701 (1163)
+++...|-.++. =||.||+|+++|++|+ +.|+.+.+ ||+++|++| +|+|+|+++||++.|||.+..
T Consensus 288 PE~f~~~~itpP--rgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~--lskwvgEaERqlrllFeeA~k-- 361 (1080)
T KOG0732|consen 288 PEFFDNFNITPP--RGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADC--LSKWVGEAERQLRLLFEEAQK-- 361 (1080)
T ss_pred hhHhhhcccCCC--cceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchh--hccccCcHHHHHHHHHHHHhc--
Confidence 455444446665 3899999999999977 89999888 999999999 999999999999999999887
Q ss_pred cCCCeEEEEcchhhhhc-----CChhhHHHHHHHHhcC------CCCEEEEEeccccccccccCCCCCceeeccCCchhh
Q 001076 702 KSSPLIVFVKDIEKSLT-----GNNDAYGALKSKLENL------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTA 770 (1163)
Q Consensus 702 k~~P~IIffddid~~La-----~~~~~~~~i~s~L~~L------~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~ 770 (1163)
+||+||||||||| || +|+|+|++||+||++| ||+|||||||||+
T Consensus 362 -~qPSIIffdeIdG-lapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRp----------------------- 416 (1080)
T KOG0732|consen 362 -TQPSIIFFDEIDG-LAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRP----------------------- 416 (1080)
T ss_pred -cCceEEecccccc-ccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCc-----------------------
Confidence 9999999999999 88 6999999999999999 8999999999954
Q ss_pred hccccCCCCccccccccccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhhhhcCCC
Q 001076 771 LLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL 848 (1163)
Q Consensus 771 lldp~~pd~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~l~~~~L 848 (1163)
|++++ |||| ||+++|+|+||+..+|..|+.|||+.|.+++
T Consensus 417 -------da~dp-------------------------------aLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i 458 (1080)
T KOG0732|consen 417 -------DAIDP-------------------------------ALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPI 458 (1080)
T ss_pred -------cccch-------------------------------hhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCC
Confidence 44554 8998 9999999999999999999999999999999
Q ss_pred CcccccchhhcccCCchhhhhhHHhHHhhhhhhhcCCCCCC-CCcccccccchhhhHHHHHhhhhhhhhhhhhhhccc--
Q 001076 849 DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVV-- 925 (1163)
Q Consensus 849 ~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al~r~~~qi~~-~~kl~Id~~sI~v~~~dF~~al~eikp~~~slk~lv-- 925 (1163)
.-..+..||..+.||+||||++||++|+..++++.+|++|. +.++.+++..|++...+|..++..+.+...+-..+.
T Consensus 459 ~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~ 538 (1080)
T KOG0732|consen 459 SRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSR 538 (1080)
T ss_pred CHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCC
Confidence 99999999999999999999999999999999999999998 889999999999999999999988776533211000
Q ss_pred chhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhh-hhcCCCCCCCceEEEEcCCCChHHHHHHHH
Q 001076 926 TENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPEL-FCKGQLTKPCKGILLFGPPGTGKTMLAKAV 1004 (1163)
Q Consensus 926 ~~~e~ek~ll~~iip~~e~~~tfddI~Gleevk~~L~e~V~lpl~~pel-f~k~~l~~p~kgVLL~GPPGTGKT~LArAL 1004 (1163)
+....-..++ +..........+.-.......+.+...+..+..+. |.-..+.+| .+|+.|..|.|.+++..+|
T Consensus 539 Pl~~~~~~ll----~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~--~lli~~~~~~g~~~lg~aI 612 (1080)
T KOG0732|consen 539 PLSTYLKPLL----PFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRP--RLLINGGKGSGQDYLGPAI 612 (1080)
T ss_pred CCCcceeccc----chHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCc--HHhcCCCcccccCcccHHH
Confidence 0000000000 00000000011111222222222222221111111 111222333 5999999999999999999
Q ss_pred HHHh-CCcEEEEecccccccc-ccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCC
Q 001076 1005 ATEA-GANFINISMSSITSKW-FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1082 (1163)
Q Consensus 1005 A~eL-g~pfi~Id~seL~s~~-~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl 1082 (1163)
.+.+ ++++..++.+.+.... .+..+..|..+|.+|+++.||||||+++|.|...... .+..+|+..++..
T Consensus 613 lh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~p~--------s~~~~~~~~l~~~ 684 (1080)
T KOG0732|consen 613 LHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVIPV--------SFLEEFLSSLDEK 684 (1080)
T ss_pred HHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhcCcc--------hhhhcchhcchhh
Confidence 9998 8999999988888766 7788899999999999999999999999999643322 2333444444322
Q ss_pred cccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhh
Q 001076 1083 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1134 (1163)
Q Consensus 1083 ~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k 1134 (1163)
.. ...|..+-|-+..+.-.+ ..++.+..|..+.+..+|+..+++
T Consensus 685 ~~--~t~i~e~~t~~~~~~~~~------~~~~t~~~p~~~s~~~ff~r~I~~ 728 (1080)
T KOG0732|consen 685 AL--STPILELHTWDTSFESVN------KSVVTLSKPSAESTGAFFKRLIRK 728 (1080)
T ss_pred hh--ccchhhhccccccccccC------ccccccccchhhhhHHHHHHHHHH
Confidence 11 122333322221111001 134667788888888888887765
No 8
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-42 Score=393.31 Aligned_cols=392 Identities=21% Similarity=0.260 Sum_probs=304.8
Q ss_pred eeeecCCCCCCCCCCC--------CCCCCCCcccccccccccCCCcchhhHHHHHHHHHHHHhhcc-----CCCeEEEEc
Q 001076 645 GVRFDRSIPEGNNLGG--------FCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESK-----SSPLIVFVK 711 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~~--------~c~~~~~ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k-----~~P~IIffd 711 (1163)
|++.=+|+++|+||++ .-+.- .-+-..+ |+|+||++|--+|.||.-+-+|-| .+=-||.||
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNArePK---IVNGPeI---L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFD 331 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAREPK---IVNGPEI---LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFD 331 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCCCc---ccCcHHH---HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEeh
Confidence 5666679999999982 22211 1112344 789999999999999999987766 245699999
Q ss_pred chhhhhc-------CChhhHHHHHHHHh-cCCC-----CEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCC
Q 001076 712 DIEKSLT-------GNNDAYGALKSKLE-NLPS-----NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPD 778 (1163)
Q Consensus 712 did~~La-------~~~~~~~~i~s~L~-~L~g-----~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd 778 (1163)
|||. ++ |..-.|..++..|+ ++.| +|+|||=|||.|- |
T Consensus 332 EiDA-ICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~Dl----------------------I------ 382 (744)
T KOG0741|consen 332 EIDA-ICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDL----------------------I------ 382 (744)
T ss_pred hhHH-HHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhh----------------------H------
Confidence 9999 55 34556666666554 3455 9999999997554 2
Q ss_pred CccccccccccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhh-hhcCCC--Ccccc
Q 001076 779 NFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGL--DCVDL 853 (1163)
Q Consensus 779 ~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~-l~~~~L--~~vdL 853 (1163)
|||||| ||++|+|+.|||++||.+|++|||. |+++.+ .++||
T Consensus 383 ---------------------------------DEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl 429 (744)
T KOG0741|consen 383 ---------------------------------DEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDL 429 (744)
T ss_pred ---------------------------------HHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCH
Confidence 469999 9999999999999999999999999 999887 99999
Q ss_pred cchhhcccCCchhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhhhhhhhhhhhhhhcccchhHHHHH
Q 001076 854 ESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKK 933 (1163)
Q Consensus 854 eeLa~~tkg~sgadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~dF~~al~eikp~~~slk~lv~~~e~ek~ 933 (1163)
++||.+||||+||||++||++|.++|++|+.....+........+++++.+.||-+++.+++|+++ ..++++++.
T Consensus 430 ~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG-----~see~l~~~ 504 (744)
T KOG0741|consen 430 KELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFG-----ISEEDLERF 504 (744)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccC-----CCHHHHHHH
Confidence 999999999999999999999999999998765534445567778999999999999999999998 667889999
Q ss_pred HhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001076 934 LLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI 1013 (1163)
Q Consensus 934 ll~~iip~~e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi 1013 (1163)
...+++.+... ...+.+.-..++.+ .+. .-..+...+||+||||+|||+||..+|...++||+
T Consensus 505 ~~~Gmi~~g~~---------v~~il~~G~llv~q-vk~-------s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFv 567 (744)
T KOG0741|consen 505 VMNGMINWGPP---------VTRILDDGKLLVQQ-VKN-------SERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFV 567 (744)
T ss_pred HhCCceeeccc---------HHHHHhhHHHHHHH-hhc-------cccCcceEEEEecCCCCChHHHHHHHHhhcCCCeE
Confidence 99988877543 12233332233322 111 12345578999999999999999999999999999
Q ss_pred EEeccc-cccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEE
Q 001076 1014 NISMSS-ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1163)
Q Consensus 1014 ~Id~se-L~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlV 1092 (1163)
++-.++ +.+..-...-.+++.+|+.||+.+-+||++|+||+|+ ...+....+.+.+++.|+..+...+++. .+++|
T Consensus 568 KiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLi--D~vpIGPRfSN~vlQaL~VllK~~ppkg-~kLli 644 (744)
T KOG0741|consen 568 KIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLL--DYVPIGPRFSNLVLQALLVLLKKQPPKG-RKLLI 644 (744)
T ss_pred EEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhh--cccccCchhhHHHHHHHHHHhccCCCCC-ceEEE
Confidence 976665 3332222334589999999999999999999999997 3445566777899999999999887764 68999
Q ss_pred EEEeCCCCCCC-HHHHhccCcEEEecCCCH-HHHHHHHH
Q 001076 1093 LAATNRPFDLD-EAVVRRLPRRLMVNLPDA-PNREKIIR 1129 (1163)
Q Consensus 1093 IaTTN~p~~Ld-~aLlrRFd~vI~I~~Pd~-eeR~eILk 1129 (1163)
++||.....|. ..++..|+..+.++..+. ++-.+++.
T Consensus 645 ~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 645 FGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred EecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHH
Confidence 99998866665 456778998888766543 44444443
No 9
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-41 Score=371.83 Aligned_cols=218 Identities=42% Similarity=0.715 Sum_probs=205.2
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 001076 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1163)
Q Consensus 943 e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s 1022 (1163)
.+.++|++|+|++++++++++.+.+|+.+|++|.+.|+ .||+|||||||||||||+||+|+|++.++.|+++..++|..
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI-~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGI-DPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCC-CCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 45789999999999999999999999999999999996 46699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCc--chHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCC
Q 001076 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1163)
Q Consensus 1023 ~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~--~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1163)
+|+|+....++.+|..|+.+.||||||||||.+.++|... +......+.+.+|+++|||+.+. .+|-||++||+++
T Consensus 224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~--~nvKVI~ATNR~D 301 (406)
T COG1222 224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR--GNVKVIMATNRPD 301 (406)
T ss_pred HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC--CCeEEEEecCCcc
Confidence 9999999999999999999999999999999999888653 34445667788899999999764 7899999999999
Q ss_pred CCCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhcC
Q 001076 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDYT 1163 (1163)
Q Consensus 1101 ~Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lvt 1163 (1163)
.|||+++| |||+.|+|++|+.+.|.+||+.+..++.+.+++|++.||+.|+|+||+||+.+||
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaict 366 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICT 366 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHH
Confidence 99999999 9999999999999999999999999999999999999999999999999999997
No 10
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-39 Score=358.90 Aligned_cols=224 Identities=46% Similarity=0.794 Sum_probs=211.2
Q ss_pred cCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 936 ADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 936 ~~iip~~e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
.+++. ..+.+.|+||.|+.++|+-|+++|.+|+..|+.|. ++.+|.++||++||||||||+||+|+|.+++..|++|
T Consensus 200 rdIl~-~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~--GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNV 276 (491)
T KOG0738|consen 200 RDILQ-RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNV 276 (491)
T ss_pred HHHhc-cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHh--hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEe
Confidence 34443 34468999999999999999999999999999997 4589999999999999999999999999999999999
Q ss_pred eccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCC--CCEEEE
Q 001076 1016 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK--ERVLVL 1093 (1163)
Q Consensus 1016 d~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~--~~VlVI 1093 (1163)
+.+.+.++|-|++|+.++-+|+.|+.+.|++|||||||.|+.+|++..+|++.+++..+||++|||+..+.. ..|+|+
T Consensus 277 SsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVL 356 (491)
T KOG0738|consen 277 SSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVL 356 (491)
T ss_pred chhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999876532 248999
Q ss_pred EEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1094 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1094 aTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
|+||.||+||++|+|||.++|+|++|+.+.|..+|+..+....+.++++++.||+.++||||+||.++|
T Consensus 357 AATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvC 425 (491)
T KOG0738|consen 357 AATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVC 425 (491)
T ss_pred eccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998
No 11
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-37 Score=364.59 Aligned_cols=424 Identities=25% Similarity=0.407 Sum_probs=310.0
Q ss_pred eeeecCCCCCCCCCC--CCC---CCCCC-cccccccccccCCCcchhhHHHHHHHHHHHHhhcc-CCCeEEEEcchhhhh
Q 001076 645 GVRFDRSIPEGNNLG--GFC---EDDHG-FFCTASSLRLDSSLGDEVDKLAINELFEVALNESK-SSPLIVFVKDIEKSL 717 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~--~~c---~~~~~-ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k-~~P~IIffddid~~L 717 (1163)
.++.++|.|.|++-- ..| +.++- |+..+..-.++.+ .-.-++.++...|.++- ++|+||++||.|-++
T Consensus 433 ~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~-----~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~ 507 (952)
T KOG0735|consen 433 NILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGS-----SLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLA 507 (952)
T ss_pred cEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccch-----hHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhh
Confidence 577888889998754 223 32222 4444433333322 22236666666777666 999999999999955
Q ss_pred c------CChhh-HHHHHHHHhcC------CC-CEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCcccc
Q 001076 718 T------GNNDA-YGALKSKLENL------PS-NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRL 783 (1163)
Q Consensus 718 a------~~~~~-~~~i~s~L~~L------~g-~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~ 783 (1163)
. +|... +.++-..|..+ ++ .|.||++-..... |.|. -+
T Consensus 508 ~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qt----------------------l~~~---L~--- 559 (952)
T KOG0735|consen 508 SASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQT----------------------LNPL---LV--- 559 (952)
T ss_pred ccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhh----------------------cChh---hc---
Confidence 5 23322 22333333222 34 4455655442111 1111 01
Q ss_pred ccccccchHHHHHhhhccccceeecCCchhHHHHHHHHHHHHhhhhhhccchhhHHHhhhhcCCCCcccccchhhcccCC
Q 001076 784 HDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTL 863 (1163)
Q Consensus 784 ~~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~LpdlkgR~~Il~IHT~l~~~~L~~vdLeeLa~~tkg~ 863 (1163)
...+|+.++.++.|.-.++. .||..--..........+|+-++.+|.||
T Consensus 560 -------------s~~~Fq~~~~L~ap~~~~R~------------------~IL~~~~s~~~~~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 560 -------------SPLLFQIVIALPAPAVTRRK------------------EILTTIFSKNLSDITMDDLDFLSVKTEGY 608 (952)
T ss_pred -------------CccceEEEEecCCcchhHHH------------------HHHHHHHHhhhhhhhhHHHHHHHHhcCCc
Confidence 11267777777777554433 22211000000111334666799999999
Q ss_pred chhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhhhhhhhhhhhhhhcccchhHHHHHHhcCCCCCCC
Q 001076 864 TTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSD 943 (1163)
Q Consensus 864 sgadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~dF~~al~eikp~~~slk~lv~~~e~ek~ll~~iip~~e 943 (1163)
..-|+.-++.-|...|+..+ +.+..| ..+..+|..++....|..- .++--...
T Consensus 609 ~~~DL~ifVeRai~~a~ler---is~~~k--------lltke~f~ksL~~F~P~aL----------------R~ik~~k~ 661 (952)
T KOG0735|consen 609 LATDLVIFVERAIHEAFLER---ISNGPK--------LLTKELFEKSLKDFVPLAL----------------RGIKLVKS 661 (952)
T ss_pred cchhHHHHHHHHHHHHHHHH---hccCcc--------cchHHHHHHHHHhcChHHh----------------hhcccccc
Confidence 99999999999999998432 222322 2345566666555444321 11111122
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 001076 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1163)
Q Consensus 944 ~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~ 1023 (1163)
.+..|+||+|+.++++.+++.+++|.++|.+|.+..+..+ .|||||||||||||+||.++|...++.|+.+.+++|.++
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~-~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~K 740 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLR-TGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSK 740 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccc-cceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHH
Confidence 2467999999999999999999999999999998876544 799999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCC
Q 001076 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1103 (1163)
Q Consensus 1024 ~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld 1103 (1163)
|+|.+|+.++.+|..|+..+|||||+||+|.+.++|+... .....++.|+|+..|||... -..|.|+|+|.+|+.+|
T Consensus 741 yIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDs-TGVTDRVVNQlLTelDG~Eg--l~GV~i~aaTsRpdliD 817 (952)
T KOG0735|consen 741 YIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDS-TGVTDRVVNQLLTELDGAEG--LDGVYILAATSRPDLID 817 (952)
T ss_pred HhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCC-CCchHHHHHHHHHhhccccc--cceEEEEEecCCccccC
Confidence 9999999999999999999999999999999999887533 23457899999999999865 36799999999999999
Q ss_pred HHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhcC
Q 001076 1104 EAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDYT 1163 (1163)
Q Consensus 1104 ~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lvt 1163 (1163)
++++| |+|+.++.+.|+..+|.+|++.+........++|++.+|.+|+||||+||+.|++
T Consensus 818 pALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~ 879 (952)
T KOG0735|consen 818 PALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLY 879 (952)
T ss_pred HhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHH
Confidence 99999 9999999999999999999999998888889999999999999999999999874
No 12
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-37 Score=334.96 Aligned_cols=223 Identities=43% Similarity=0.774 Sum_probs=205.6
Q ss_pred cCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 936 ADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 936 ~~iip~~e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
...|....+++.|+|+.|++.+++.|++.+.+|+..|++|... .+|.++|||||||||||++||+|+|.+.+..|+.+
T Consensus 120 ~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk--R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSv 197 (439)
T KOG0739|consen 120 NSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK--RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSV 197 (439)
T ss_pred hhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC--CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEe
Confidence 3445556778999999999999999999999999999999854 67899999999999999999999999999999999
Q ss_pred eccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEE
Q 001076 1016 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1095 (1163)
Q Consensus 1016 d~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaT 1095 (1163)
+.++|+++|.|++|+.++++|+.|+.+.|+||||||||.|++.+. .++.++.+++..+|++.|.|... ++..|+|+++
T Consensus 198 SSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~-enEseasRRIKTEfLVQMqGVG~-d~~gvLVLgA 275 (439)
T KOG0739|consen 198 SSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRS-ENESEASRRIKTEFLVQMQGVGN-DNDGVLVLGA 275 (439)
T ss_pred ehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCC-CCchHHHHHHHHHHHHhhhcccc-CCCceEEEec
Confidence 999999999999999999999999999999999999999987775 46778999999999999999864 4589999999
Q ss_pred eCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCC-CCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1096 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE-LASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1096 TN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~-l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
||-|+.||.+++|||+++|+|++|+...|..+|+.++.... ...+.|+..|+++|+||||+||..+|
T Consensus 276 TNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivV 343 (439)
T KOG0739|consen 276 TNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVV 343 (439)
T ss_pred CCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEe
Confidence 99999999999999999999999999999999999998754 44788999999999999999997654
No 13
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-35 Score=344.06 Aligned_cols=216 Identities=38% Similarity=0.657 Sum_probs=204.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~ 1024 (1163)
.++|.+|+|++....+|.+.+.. +.+|+.|...|+ .|++|||||||||||||+||+|||.++++||+.++.+++++.+
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv-~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGV-RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCC-CCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 67899999999999999999988 999999999885 5779999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccC--CCCEEEEEEeCCCCCC
Q 001076 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD--KERVLVLAATNRPFDL 1102 (1163)
Q Consensus 1025 ~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~--~~~VlVIaTTN~p~~L 1102 (1163)
.|++|+.++.+|+.|+...|||+||||||.+.++|.. ...+.-+++..+|+..||++..+. +.+|+||+|||+|+.|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDsl 342 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSL 342 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCccc
Confidence 9999999999999999999999999999999988876 667788999999999999987643 4789999999999999
Q ss_pred CHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhcC
Q 001076 1103 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDYT 1163 (1163)
Q Consensus 1103 d~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lvt 1163 (1163)
|++|+| ||++.|.+..|+..+|.+||+.++++..+..++|+..||++|.||.|+||+.||.
T Consensus 343 DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~ 405 (802)
T KOG0733|consen 343 DPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCR 405 (802)
T ss_pred CHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHH
Confidence 999999 9999999999999999999999999999999999999999999999999999983
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-35 Score=336.36 Aligned_cols=219 Identities=39% Similarity=0.629 Sum_probs=204.1
Q ss_pred CCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 001076 939 IPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS 1018 (1163)
Q Consensus 939 ip~~e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~s 1018 (1163)
.|.....++|+|+-|.++++++|.+.+.. ++.|+.|.+.+ .+-|+||||+||||||||+||+|+|.+.+.||+....+
T Consensus 294 ~p~~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLG-GKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGS 371 (752)
T KOG0734|consen 294 DPEQMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLG-GKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGS 371 (752)
T ss_pred ChhhhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhcc-CcCCCceEEeCCCCCchhHHHHHhhcccCCCeEecccc
Confidence 33344578999999999999999998874 88999999877 56679999999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCC
Q 001076 1019 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1098 (1163)
Q Consensus 1019 eL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~ 1098 (1163)
++...++|.....++.+|..|++..||||||||||.+.++|.....+ ..+..+|+|+..|||+..+ +.|+||++||.
T Consensus 372 EFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~qN--eGiIvigATNf 448 (752)
T KOG0734|consen 372 EFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQN--EGIIVIGATNF 448 (752)
T ss_pred chhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCcC--CceEEEeccCC
Confidence 99999999999999999999999999999999999998888665555 8899999999999999754 78999999999
Q ss_pred CCCCCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1099 PFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1099 p~~Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
|+.||+++.| |||++|.++.||...|.+||+.|+.+..+..++|+..||+-|.||+|+||.+|+
T Consensus 449 pe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlV 514 (752)
T KOG0734|consen 449 PEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLV 514 (752)
T ss_pred hhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHH
Confidence 9999999999 999999999999999999999999999999999999999999999999999986
No 15
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=4.4e-32 Score=321.86 Aligned_cols=272 Identities=23% Similarity=0.391 Sum_probs=212.7
Q ss_pred CCcccccchhhcccCCchhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhhhhhhhhhhhhhhcccch
Q 001076 848 LDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTE 927 (1163)
Q Consensus 848 L~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~dF~~al~eikp~~~slk~lv~~ 927 (1163)
++...++.|+..+.|++-.+++.++..+.. ... .++.+.+......-.. +.
T Consensus 162 ~~~~~~~~l~~~~~gls~~~~~~~~~~~~~----~~~---------~~~~~~~~~i~~~k~q--------------~~-- 212 (489)
T CHL00195 162 IDSELLENLTRACQGLSLERIRRVLSKIIA----TYK---------TIDENSIPLILEEKKQ--------------II-- 212 (489)
T ss_pred CCHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HcC---------CCChhhHHHHHHHHHH--------------HH--
Confidence 467788899999999999999988765322 111 1233333222111000 00
Q ss_pred hHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 001076 928 NEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 928 ~e~ek~ll~~iip~~e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
.+ ..++.......+|++|+|++.+|+.+.+....+ ...+...++ .+++||||+||||||||++|+++|++
T Consensus 213 ---~~---~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl-~~pkGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 213 ---SQ---TEILEFYSVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGL-PTPRGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred ---hh---hccccccCCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCC-CCCceEEEECCCCCcHHHHHHHHHHH
Confidence 00 112222223568999999999999998755322 122233443 45699999999999999999999999
Q ss_pred hCCcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCC
Q 001076 1008 AGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 1087 (1163)
Q Consensus 1008 Lg~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~ 1087 (1163)
++.+|+.++++.+.++++|+++..++++|..|+...||||||||||.++..+..........+++.+|+..++. ..
T Consensus 283 ~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~----~~ 358 (489)
T CHL00195 283 WQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE----KK 358 (489)
T ss_pred hCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc----CC
Confidence 99999999999999999999999999999999999999999999999987654444556677888999888764 23
Q ss_pred CCEEEEEEeCCCCCCCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCC--CChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1088 ERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEEL--ASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1088 ~~VlVIaTTN~p~~Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l--~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
.+|+||+|||.++.||++++| ||+++|+|+.|+.++|.+||+.++.+... ..+.++..||..|+||||+||+.+|
T Consensus 359 ~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv 437 (489)
T CHL00195 359 SPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSI 437 (489)
T ss_pred CceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHH
Confidence 679999999999999999998 99999999999999999999999988643 3578999999999999999999886
No 16
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-32 Score=333.50 Aligned_cols=407 Identities=19% Similarity=0.271 Sum_probs=301.9
Q ss_pred HHHHHHHHHHHhhccCCCeEE--------------------------------EEcchhhhhcC---ChhhHHHHHHHHh
Q 001076 688 LAINELFEVALNESKSSPLIV--------------------------------FVKDIEKSLTG---NNDAYGALKSKLE 732 (1163)
Q Consensus 688 ~~l~~l~evl~~e~k~~P~II--------------------------------ffddid~~La~---~~~~~~~i~s~L~ 732 (1163)
.-|++++|+|+++.|+||++| |-.|+..++|| +++|+.+||..|.
T Consensus 177 ~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ 256 (786)
T COG0542 177 EEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLK 256 (786)
T ss_pred HHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHH
Confidence 358999999999999999999 99999999997 8999999999999
Q ss_pred cC--CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCccccccccccchHHHHHhhhccccceeecCC
Q 001076 733 NL--PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLP 810 (1163)
Q Consensus 733 ~L--~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P 810 (1163)
.+ .++||+|++++|+..|+++++|++| |++|||+|+ +.+|+.+| ||.++.++|+-.+.
T Consensus 257 ev~~~~~vILFIDEiHtiVGAG~~~G~a~-------DAaNiLKPa----LARGeL~~---------IGATT~~EYRk~iE 316 (786)
T COG0542 257 EVEKSKNVILFIDEIHTIVGAGATEGGAM-------DAANLLKPA----LARGELRC---------IGATTLDEYRKYIE 316 (786)
T ss_pred HHhcCCCeEEEEechhhhcCCCccccccc-------chhhhhHHH----HhcCCeEE---------EEeccHHHHHHHhh
Confidence 99 4599999999999999999988778 999999996 99999999 99999999999999
Q ss_pred chhHHHHHHHH------HHHHhhhhhhc-cchhhHHHhh-hhcCCC-CcccccchhhcccCCchhhhhhHHhHHhhhhhh
Q 001076 811 QDEALLSDWKQ------QLERDVETLKG-QSNIISIRSV-LSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 881 (1163)
Q Consensus 811 ~DeALlRRfer------q~e~~Lpdlkg-R~~Il~IHT~-l~~~~L-~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al~ 881 (1163)
+|.||-|||+. .++..+.+++| +..++.+|.+ +.+..+ .++.|+.-++.++.+++..|+-+...++...++
T Consensus 317 KD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~ 396 (786)
T COG0542 317 KDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLE 396 (786)
T ss_pred hchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhc
Confidence 99999999996 56667778888 7789999998 899998 999999999999999999999887777777765
Q ss_pred hcCCCCCCCCc---ccccccchhhhH-HH-H-Hhhhhhhhhhh--------hhhhcccchhHHHHHHhcCC-CCCCCCC-
Q 001076 882 HCSEAPGKDAK---LKISTESIMYGL-NI-L-QGIQSESKSLK--------KSLKDVVTENEFEKKLLADV-IPPSDIG- 945 (1163)
Q Consensus 882 r~~~qi~~~~k---l~Id~~sI~v~~-~d-F-~~al~eikp~~--------~slk~lv~~~e~ek~ll~~i-ip~~e~~- 945 (1163)
...|....... ..+..+.-.... .+ - .....++...+ ..+..-+..++.......+. ||.....
T Consensus 397 ~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Ia~vv~~~TgIPv~~l~~ 476 (786)
T COG0542 397 IDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEAEVDEDDIAEVVARWTGIPVAKLLE 476 (786)
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhhccCHHHHHHHHHHHHCCChhhhch
Confidence 43111100000 000000000000 00 0 00000000000 00000011111222111111 2221000
Q ss_pred ------CC-----cccccCcHHHHHHHHHHHHcccCChhhhhcCCCC---CCCceEEEEcCCCChHHHHHHHHHHHhC--
Q 001076 946 ------VT-----FDDIGALENVKDTLKELVMLPLQRPELFCKGQLT---KPCKGILLFGPPGTGKTMLAKAVATEAG-- 1009 (1163)
Q Consensus 946 ------~t-----fddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~---~p~kgVLL~GPPGTGKT~LArALA~eLg-- 1009 (1163)
.. -..++|++++...+.+.|.. .+.++. +|...+||.||+|+|||.||++||..+.
T Consensus 477 ~e~~kll~le~~L~~rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~ 548 (786)
T COG0542 477 DEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD 548 (786)
T ss_pred hhHHHHHHHHHHHhcceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC
Confidence 00 13588999999999998875 234443 4445589999999999999999999995
Q ss_pred -CcEEEEeccccc-----cccccchHHHHHH-----HHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHH
Q 001076 1010 -ANFINISMSSIT-----SKWFGEGEKYVKA-----VFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1078 (1163)
Q Consensus 1010 -~pfi~Id~seL~-----s~~~Ge~E~~Ir~-----lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~ 1078 (1163)
-.++++||++++ ++.+|.+.+||.. +.+..++.+.|||++|||| .++..+++.|++.
T Consensus 549 e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIE------------KAHpdV~nilLQV 616 (786)
T COG0542 549 EQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIE------------KAHPDVFNLLLQV 616 (786)
T ss_pred CccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhh------------hcCHHHHHHHHHH
Confidence 899999999976 5567777777653 5556667778999999998 5678999999999
Q ss_pred hcCCcccCC-------CCEEEEEEeCC----------------------------CCCCCHHHHhccCcEEEecCCCHHH
Q 001076 1079 WDGLRTKDK-------ERVLVLAATNR----------------------------PFDLDEAVVRRLPRRLMVNLPDAPN 1123 (1163)
Q Consensus 1079 Ldgl~~k~~-------~~VlVIaTTN~----------------------------p~~Ld~aLlrRFd~vI~I~~Pd~ee 1123 (1163)
+|....++. .+.++|+|||. ...+.|+|++|++.+|.|.+.+.+.
T Consensus 617 lDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~ 696 (786)
T COG0542 617 LDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEV 696 (786)
T ss_pred hcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHH
Confidence 986655442 47899999985 1246689999999999999999999
Q ss_pred HHHHHHHHHhh
Q 001076 1124 REKIIRVILAK 1134 (1163)
Q Consensus 1124 R~eILk~ll~k 1134 (1163)
..+|+...+.+
T Consensus 697 l~~Iv~~~L~~ 707 (786)
T COG0542 697 LERIVDLQLNR 707 (786)
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 17
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=7.9e-32 Score=286.04 Aligned_cols=216 Identities=36% Similarity=0.624 Sum_probs=200.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~ 1024 (1163)
..+++-++|++.+++++++.+.+|..+|++|...++.+| +|+|||||||||||.||+++|++..+.|++++.++|..+|
T Consensus 143 DStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQP-KGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 143 DSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 221 (404)
T ss_pred ccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCC-cceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHH
Confidence 457788999999999999999999999999999998877 8999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhccCCeEEEEccccccccCCC--CcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCC
Q 001076 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE--NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1102 (1163)
Q Consensus 1025 ~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~--s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~L 1102 (1163)
+|+....++.+|-.|+.|.|+|||+||||++...|. +.+......+.+.+|++.+||+..+ .++-||++||+.+.|
T Consensus 222 igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat--knikvimatnridil 299 (404)
T KOG0728|consen 222 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT--KNIKVIMATNRIDIL 299 (404)
T ss_pred hhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc--cceEEEEeccccccc
Confidence 999999999999999999999999999999976553 2233445566778899999999765 689999999999999
Q ss_pred CHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhcC
Q 001076 1103 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDYT 1163 (1163)
Q Consensus 1103 d~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lvt 1163 (1163)
|++++| |+|+.|+|++|+.+.|.+|++.+-.++++...+++..||+...|.||++++.+||
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vct 362 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCT 362 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhh
Confidence 999999 9999999999999999999999999999999999999999999999999999997
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.97 E-value=1.3e-31 Score=286.17 Aligned_cols=211 Identities=32% Similarity=0.529 Sum_probs=190.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~ 1024 (1163)
..+|+|++|++++++..+-++ ..+.+|+.|..+. |++||||||||||||++|+++|++++.||+.+...+|.+.+
T Consensus 117 ~it~ddViGqEeAK~kcrli~-~yLenPe~Fg~WA----PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIM-EYLENPERFGDWA----PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred cccHhhhhchHHHHHHHHHHH-HHhhChHHhcccC----cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 568999999999998876544 4588999998773 58999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCH
Q 001076 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1104 (1163)
Q Consensus 1025 ~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~ 1104 (1163)
+|.....|+++|+.|++..|||+||||+|.+.=.|.-+........+.|.|+..|||+. .+..|+.||+||+|+.||+
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~--eneGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK--ENEGVVTIAATNRPELLDP 269 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc--cCCceEEEeecCChhhcCH
Confidence 99999999999999999999999999999986444333333345578899999999996 5588999999999999999
Q ss_pred HHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1105 AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1105 aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
++++||...|+|.+|+.++|.+|++.++++.++.-+.+++.++..|.|+||.||+.-+
T Consensus 270 aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekv 327 (368)
T COG1223 270 AIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKV 327 (368)
T ss_pred HHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHH
Confidence 9999999999999999999999999999999998899999999999999999998643
No 19
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-31 Score=283.85 Aligned_cols=218 Identities=38% Similarity=0.651 Sum_probs=203.3
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001076 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1163)
Q Consensus 942 ~e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~ 1021 (1163)
..+.+++.||+|++-+++++++.+.+|+.+.++|.+-++. |++|||||||||||||+||+|+|+...+.|+++..+++.
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigid-pprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGID-PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCC-CCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 4567899999999999999999999999999999998864 669999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCc--chHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCC
Q 001076 1022 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1163)
Q Consensus 1022 s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~--~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p 1099 (1163)
.+|.|+...+++.+|+.|+.+.|+||||||||.+..+|+.. +......+++.+|++.|||+... .+|-||++||+.
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~--~nvkvimatnra 304 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT--TNVKVIMATNRA 304 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc--cceEEEEecCcc
Confidence 99999999999999999999999999999999999887642 33445678889999999999754 689999999999
Q ss_pred CCCCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1100 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1100 ~~Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
+.|||+++| |+++.|+|++|+..+++-+|..+..++.+.+++|++.+..+-+-.||+||..+|
T Consensus 305 dtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aic 369 (408)
T KOG0727|consen 305 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAIC 369 (408)
T ss_pred cccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHH
Confidence 999999999 999999999999999999999999999999999999999999999999999887
No 20
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.4e-31 Score=321.26 Aligned_cols=218 Identities=41% Similarity=0.689 Sum_probs=200.8
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 001076 941 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1020 (1163)
Q Consensus 941 ~~e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL 1020 (1163)
..+.+++|.|+.|.++++++|+|+|.. +.+|+.|.+.+ .+.|+|+||+||||||||.||+|+|.++|+||+.++.+++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lG-AKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEF 380 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEF 380 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcC-CcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHH
Confidence 345578999999999999999999974 99999999988 4566999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCC---CcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeC
Q 001076 1021 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE---NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1097 (1163)
Q Consensus 1021 ~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~---s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN 1097 (1163)
+..+.|.....++.+|..|+...||||||||||.+..++. ..+.+......+|+++..|||+... ..|+||++||
T Consensus 381 vE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tn 458 (774)
T KOG0731|consen 381 VEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATN 458 (774)
T ss_pred HHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccC
Confidence 9999998899999999999999999999999999988874 3344555677899999999999765 6799999999
Q ss_pred CCCCCCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1098 RPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1098 ~p~~Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
+++.||++++| |||++|.++.|+...|.+|++.++.+..+. +++++..||.+|.||+|+||.++|
T Consensus 459 r~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~ 526 (774)
T KOG0731|consen 459 RPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLC 526 (774)
T ss_pred CccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhh
Confidence 99999999999 999999999999999999999999998885 889999999999999999999987
No 21
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-31 Score=308.77 Aligned_cols=217 Identities=50% Similarity=0.845 Sum_probs=205.2
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 001076 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1163)
Q Consensus 943 e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s 1022 (1163)
...+.|+|+.|++.+++.+.+++.+|+.++++|... ..|.+++||+||||+|||+|++|||.+.++.|+.+..+.|.+
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl--r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL--REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc--ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 345789999999999999999999999999999844 678899999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCC
Q 001076 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1102 (1163)
Q Consensus 1023 ~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~L 1102 (1163)
+|+|+.|+.++.+|..|+..+|+||||||||+++..| .+..++..+++..+|+..+++.......+|+||+|||.|+.+
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~ 303 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWEL 303 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHH
Confidence 9999999999999999999999999999999999888 678888899999999999999998888899999999999999
Q ss_pred CHHHHhccCcEEEecCCCHHHHHHHHHHHHhhC-CCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1103 DEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1103 d~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~-~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
|++++|||.++++|++|+.+.|..+|+.++.+. ....+.+++.|+++|+||+|+||..||
T Consensus 304 Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~ 364 (428)
T KOG0740|consen 304 DEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALC 364 (428)
T ss_pred HHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHH
Confidence 999999999999999999999999999999887 344778999999999999999999987
No 22
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.9e-31 Score=280.16 Aligned_cols=217 Identities=32% Similarity=0.598 Sum_probs=200.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 001076 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1163)
Q Consensus 943 e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s 1022 (1163)
.+..++.||+|+++++++|.+.+.+|+.+++.|.+.++ +||+|+|+|||||||||.+|+|.|...+..|..+-.+.|..
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi-~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGI-RPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCC-CCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 34567899999999999999999999999999999985 56799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcc--hHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCC
Q 001076 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1163)
Q Consensus 1023 ~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~--~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1163)
.|+|...+.++..|..|+...|+||||||+|.+..+|+... ......+.+.+|++.+||+.+. .+|-||++||+.+
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~--~~vKviAATNRvD 321 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD--DRVKVIAATNRVD 321 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc--cceEEEeeccccc
Confidence 99999999999999999999999999999999987776532 2334456677899999999865 7899999999999
Q ss_pred CCCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1101 ~Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
.|||+++| |+++.|+|+.|+.+.|.+|++.+..++.+.+|+++++||+-|++|.|+.++.+|
T Consensus 322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVc 385 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVC 385 (424)
T ss_pred ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeee
Confidence 99999999 999999999999999999999999999999999999999999999999999887
No 23
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.97 E-value=3.2e-30 Score=300.03 Aligned_cols=218 Identities=40% Similarity=0.650 Sum_probs=198.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 001076 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1163)
Q Consensus 943 e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s 1022 (1163)
.+.++|+||+|++.+++.+++.+.+|+.+++.|.+.++. +++++||+||||||||+||+++|++++.+|+.+.++++..
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~-~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGID-PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 457899999999999999999999999999999988854 5689999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCc--chHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCC
Q 001076 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1163)
Q Consensus 1023 ~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~--~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1163)
.|.|+.+..++.+|..|+...|+||||||||.++..+... +......+++.+|+..++++... .+++||+|||+++
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~--~~v~VI~aTN~~d 295 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT--TNVKVIMATNRAD 295 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC--CCEEEEEecCCch
Confidence 9999999999999999999999999999999998766432 22334567788899999887543 5799999999999
Q ss_pred CCCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhcC
Q 001076 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDYT 1163 (1163)
Q Consensus 1101 ~Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lvt 1163 (1163)
.+|++++| ||++.|+|++|+.++|.+||+.++.+..+..++++..+|..|+||||+||+.+|.
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~ 360 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQ 360 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 99999998 9999999999999999999999999999999999999999999999999999983
No 24
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.8e-31 Score=285.73 Aligned_cols=217 Identities=39% Similarity=0.647 Sum_probs=201.6
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 001076 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1163)
Q Consensus 944 ~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~ 1023 (1163)
+..+|+||+|++.+++++++.+.+|+.+|+.|...++ +||+||+|||+||||||.||+|+|+...+.|+++-.++|..+
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGi-kpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk 258 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGI-KPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK 258 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCC-CCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHH
Confidence 3568999999999999999999999999999999885 577999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEccccccccCCCC--cchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCC
Q 001076 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1163)
Q Consensus 1024 ~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s--~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~ 1101 (1163)
|.|+..+.++++|..|..+.|+|+||||||.+..+|+. .+......+.+.+|++.+||+.. +..|-||++||+.+.
T Consensus 259 ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds--rgDvKvimATnrie~ 336 (440)
T KOG0726|consen 259 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS--RGDVKVIMATNRIET 336 (440)
T ss_pred HhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc--cCCeEEEEecccccc
Confidence 99999999999999999999999999999999888754 33344555666789999999975 478999999999999
Q ss_pred CCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhcC
Q 001076 1102 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDYT 1163 (1163)
Q Consensus 1102 Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lvt 1163 (1163)
|||+++| |+|+.|.|+.|+...+.+||..+..++.+..+++++.+...-+.+||+||+.+||
T Consensus 337 LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAict 400 (440)
T KOG0726|consen 337 LDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICT 400 (440)
T ss_pred cCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHH
Confidence 9999999 9999999999999999999999999999999999999999999999999999997
No 25
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-30 Score=277.00 Aligned_cols=218 Identities=34% Similarity=0.611 Sum_probs=203.2
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 001076 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1163)
Q Consensus 943 e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s 1022 (1163)
.+.+++.|++|..++++.|++.+.+|+.+|+.|.+.++. |++|||||||||||||.+|+|+|+..++.|+++-.++|..
T Consensus 171 kpdvty~dvggckeqieklrevve~pll~perfv~lgid-ppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGID-PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCC-CCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 457799999999999999999999999999999999864 6699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCc--chHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCC
Q 001076 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1163)
Q Consensus 1023 ~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~--~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1163)
+|+|+...+++.+|+.|+...-||||+||||.+.+.|+.. +......+.+.++++.+||+.+. .+|-|+++||+|+
T Consensus 250 kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr--gnikvlmatnrpd 327 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR--GNIKVLMATNRPD 327 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC--CCeEEEeecCCCC
Confidence 9999999999999999999999999999999999888764 33445566777899999999754 7899999999999
Q ss_pred CCCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhcC
Q 001076 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDYT 1163 (1163)
Q Consensus 1101 ~Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lvt 1163 (1163)
.||++++| |+++.++|.+|+.+.|..||+.+.+.+.+..|+-++.||+++..-+|+||+.+||
T Consensus 328 tldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvct 392 (435)
T KOG0729|consen 328 TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCT 392 (435)
T ss_pred CcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHH
Confidence 99999999 9999999999999999999999999999999999999999999999999999997
No 26
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.96 E-value=3.8e-29 Score=291.04 Aligned_cols=217 Identities=43% Similarity=0.717 Sum_probs=194.6
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 001076 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1163)
Q Consensus 944 ~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~ 1023 (1163)
+..+|++|+|++++++.+.+.+..|+.+++.|...++. ++++|||+||||||||++|+++|++++.+|+.++++++...
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~-~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIE-PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCC-CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 46789999999999999999999999999999988754 55899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcc--hHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCC
Q 001076 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1163)
Q Consensus 1024 ~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~--~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~ 1101 (1163)
|.|+.+..++.+|..|+.+.|+||||||||.+++.+.... ......+.+..++..++++.. ..+++||+|||.++.
T Consensus 205 ~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~--~~~v~VI~aTn~~~~ 282 (389)
T PRK03992 205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP--RGNVKIIAATNRIDI 282 (389)
T ss_pred hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC--CCCEEEEEecCChhh
Confidence 9999999999999999999999999999999987664322 123345566678878887643 357999999999999
Q ss_pred CCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhcC
Q 001076 1102 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDYT 1163 (1163)
Q Consensus 1102 Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lvt 1163 (1163)
++++++| ||+..|.|++|+.++|.+||+.++.+..+..++++..||..|+||+|+||+.+|+
T Consensus 283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~ 346 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICT 346 (389)
T ss_pred CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHH
Confidence 9999998 9999999999999999999999999888888899999999999999999999873
No 27
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.9e-29 Score=297.23 Aligned_cols=216 Identities=42% Similarity=0.663 Sum_probs=199.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 001076 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1163)
Q Consensus 943 e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s 1022 (1163)
...++|.|+.|.+++++++.+.|.. ++.|..|...+. +.|+|+||+||||||||+||+++|.+.+.||+.++.++++.
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGa-kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhccc-ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 4578999999999999999998874 888999988885 67799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCC--cchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCC
Q 001076 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1163)
Q Consensus 1023 ~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s--~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1163)
.++|-....+|.+|..|++++||||||||||.+...|.. .+.+..-...+|++++.|||+. .+..|+||++||+|+
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~--~~~gviviaaTNRpd 299 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG--GNEGVIVIAATNRPD 299 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC--CCCceEEEecCCCcc
Confidence 999999999999999999999999999999999876642 2445556678999999999997 347899999999999
Q ss_pred CCCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1101 ~Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
.+|++++| |||+.|.++.||...|++|++.+++...+..++++..||+.|.||+|+||.+++
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~ 363 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLL 363 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhH
Confidence 99999999 999999999999999999999999999999999999999999999999999886
No 28
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.7e-29 Score=309.85 Aligned_cols=298 Identities=30% Similarity=0.412 Sum_probs=237.9
Q ss_pred hhccchhhHHHhhhhcCCCCcccccchhhcccCCchhhhhhHHhHHhhhhhhhcCCCCCC-CCcccccccchhhhHHHHH
Q 001076 830 LKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKISTESIMYGLNILQ 908 (1163)
Q Consensus 830 lkgR~~Il~IHT~l~~~~L~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al~r~~~qi~~-~~kl~Id~~sI~v~~~dF~ 908 (1163)
...+..+.++|++.|. ..+...+..+.+|.+..++..+..+........+..++. ..++..+.........+++
T Consensus 176 ~~~s~~~~~~~p~~~~-----~~~r~~~~s~~~~~~~~~~~~~~~~~~i~~~~s~~~~~~~~~~~~t~~~~~~~~~~~~~ 250 (1080)
T KOG0732|consen 176 INDSDSRDHVPPGGRQ-----LTKRGQVQSRLHMHKSSGDTERSRSLRIESWSSGKNLQSLFDKLNTKGLQTAGLRVQKE 250 (1080)
T ss_pred cccccchhccCCCCch-----hhhhhhhcccccccccccchhhhhhhhhhhcccccccchhhhhhhcCccccchhhcccc
Confidence 3445566667766443 455567777888888888888888877776666665544 2233222222211111111
Q ss_pred hhhhhhhhhhhhhhcccchhHHHHHHhcCC-CCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceE
Q 001076 909 GIQSESKSLKKSLKDVVTENEFEKKLLADV-IPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGI 987 (1163)
Q Consensus 909 ~al~eikp~~~slk~lv~~~e~ek~ll~~i-ip~~e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgV 987 (1163)
.+. .......++|++++|++.++..|++.+..|+.+|+.|.+.++. |++||
T Consensus 251 ---------------------------~d~dp~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~it-pPrgv 302 (1080)
T KOG0732|consen 251 ---------------------------ADSDPLSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNIT-PPRGV 302 (1080)
T ss_pred ---------------------------cccCchhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccC-CCcce
Confidence 111 1123346789999999999999999999999999999988865 55999
Q ss_pred EEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCc
Q 001076 988 LLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP 1062 (1163)
Q Consensus 988 LL~GPPGTGKT~LArALA~eL-----g~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~ 1062 (1163)
||+||||||||..|+++|..+ .+.|+.-+.++..++|+|+.|..++.+|++|++++|+|||+||||-|.+.+..
T Consensus 303 L~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSs- 381 (1080)
T KOG0732|consen 303 LFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSS- 381 (1080)
T ss_pred eecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccc-
Confidence 999999999999999999888 46777778899999999999999999999999999999999999999877754
Q ss_pred chHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCC-CCC
Q 001076 1063 GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEE-LAS 1139 (1163)
Q Consensus 1063 ~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~-l~~ 1139 (1163)
.....+..+..+|+.+|+|+... ..|+||+|||+++.++++++| ||++.++|++|+.+.|.+|+..+..+.. ...
T Consensus 382 kqEqih~SIvSTLLaLmdGldsR--gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~ 459 (1080)
T KOG0732|consen 382 KQEQIHASIVSTLLALMDGLDSR--GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPIS 459 (1080)
T ss_pred hHHHhhhhHHHHHHHhccCCCCC--CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCC
Confidence 33346678899999999999754 789999999999999999999 9999999999999999999999887643 234
Q ss_pred hhhHHHHHHHcCCCCHHHHHhhcC
Q 001076 1140 DVDLEGIANMADGYSGSDLKVDYT 1163 (1163)
Q Consensus 1140 dvdl~~LA~~TeGySgaDLk~Lvt 1163 (1163)
..-+..||+.|.||.|+||+.|||
T Consensus 460 ~~l~~~la~~t~gy~gaDlkaLCT 483 (1080)
T KOG0732|consen 460 RELLLWLAEETSGYGGADLKALCT 483 (1080)
T ss_pred HHHHHHHHHhccccchHHHHHHHH
Confidence 556889999999999999999997
No 29
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.96 E-value=1.8e-28 Score=287.53 Aligned_cols=217 Identities=39% Similarity=0.643 Sum_probs=195.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 001076 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1163)
Q Consensus 944 ~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~ 1023 (1163)
+..+|+||+|++++++.+.+++.+|+.+++.|...++. +++++||+||||||||++|+++|++++.+|+.+..+++...
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~-~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k 256 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIK-PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQK 256 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCC-CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhh
Confidence 45789999999999999999999999999999988854 56899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEccccccccCCCC--cchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCC
Q 001076 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1163)
Q Consensus 1024 ~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s--~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~ 1101 (1163)
|.|+.+..++.+|..|..+.|+||||||||.++.++.. .+......+.+.+|+..++++.. ..++.||+|||+++.
T Consensus 257 ~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~--~~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 257 YLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS--RGDVKVIMATNRIES 334 (438)
T ss_pred hcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc--cCCeEEEEecCChHH
Confidence 99999999999999999999999999999999876642 12223345566778888888753 357999999999999
Q ss_pred CCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhcC
Q 001076 1102 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDYT 1163 (1163)
Q Consensus 1102 Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lvt 1163 (1163)
|+++++| ||++.|+|+.|+.++|.+||+.++.+..+..++++..++..|+||+|+||+.+|+
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~ 398 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICT 398 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHH
Confidence 9999997 9999999999999999999999999998889999999999999999999999884
No 30
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.95 E-value=6.1e-28 Score=288.99 Aligned_cols=218 Identities=42% Similarity=0.659 Sum_probs=194.1
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 001076 941 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1020 (1163)
Q Consensus 941 ~~e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL 1020 (1163)
...+.++|+||+|++++++++.+.+.. +.+++.|.+.+. .+++++||+||||||||+||++||++++.+|+.++++++
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~-~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 345578999999999999999988875 788888887664 456899999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCc--chHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCC
Q 001076 1021 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1098 (1163)
Q Consensus 1021 ~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~--~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~ 1098 (1163)
...+.|..++.++.+|..|+...|+||||||||.+...+... ........++++|+..|+++.. +.+++||+|||.
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~--~~~v~vI~aTn~ 202 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT--NTGVIVIAATNR 202 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC--CCCeEEEEecCC
Confidence 999999999999999999999999999999999998666431 2234456788999999998754 357999999999
Q ss_pred CCCCCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1099 PFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1099 p~~Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
++.||++++| ||+..|+++.|+.++|.+||+.++....+..+.++..||..|.||+|+||+.+|
T Consensus 203 ~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~ 268 (495)
T TIGR01241 203 PDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLL 268 (495)
T ss_pred hhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHH
Confidence 9999999998 999999999999999999999999988777889999999999999999999886
No 31
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=9.3e-28 Score=262.35 Aligned_cols=216 Identities=37% Similarity=0.704 Sum_probs=196.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~ 1024 (1163)
..+|++++|...++.++++.+..|+.+|++|.+-++ +||+++|||||||+|||.+|+++|..+|++|+.+..+.+.+++
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgI-k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGI-KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCC-CCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 468999999999999999999999999999998775 5679999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcch--HHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCC
Q 001076 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE--HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1102 (1163)
Q Consensus 1025 ~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~--~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~L 1102 (1163)
+|++...|++.|..|+.+.||||||||||...+++.+... .....+.+-+++..|+++.. ..+|-+|+|||+|+.|
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~--l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT--LHRVKTIMATNRPDTL 284 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh--cccccEEEecCCcccc
Confidence 9999999999999999999999999999999988865432 23444555667777777753 4789999999999999
Q ss_pred CHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhcC
Q 001076 1103 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDYT 1163 (1163)
Q Consensus 1103 d~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lvt 1163 (1163)
+++|+| |+++.+++++|+...|..|++.+.+......+++.+++.+..+||.|+|+++.||
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~t 347 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCT 347 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcc
Confidence 999999 9999999999999999999999998888888899999999999999999999986
No 32
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.95 E-value=9.7e-27 Score=268.55 Aligned_cols=218 Identities=44% Similarity=0.730 Sum_probs=192.2
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 001076 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1163)
Q Consensus 943 e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s 1022 (1163)
.+..+|++|+|++++++.+.+++..|+.+++.|...++. +++++||+||||||||++|+++|++++.+|+.+.+.++..
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~-~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIE-PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 346789999999999999999999999999999988754 5589999999999999999999999999999999999988
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcc--hHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCC
Q 001076 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1163)
Q Consensus 1023 ~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~--~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1163)
.++|+.+..++.+|..++...|+||||||||.+...+.... ........+..++..++++.. ..+++||+|||.++
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP--RGNVKVIAATNRPD 272 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEecCChh
Confidence 99999999999999999999999999999999986554321 122334556777777777643 35799999999999
Q ss_pred CCCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhcC
Q 001076 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDYT 1163 (1163)
Q Consensus 1101 ~Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lvt 1163 (1163)
.+++++++ ||++.|.|+.|+.++|.+||+.++.+..+..++++..|+..|+||+|+||+.+|.
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~ 337 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICT 337 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHH
Confidence 99999998 9999999999999999999999998888888899999999999999999999873
No 33
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.3e-27 Score=275.51 Aligned_cols=211 Identities=43% Similarity=0.689 Sum_probs=197.7
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1025 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~ 1025 (1163)
++ ++++|.......+++.+.+|++++.+|...++ ++++++|+|||||+|||++++++|++.++.++.++++++++++.
T Consensus 182 ~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~-~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~ 259 (693)
T KOG0730|consen 182 VG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGI-KPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFP 259 (693)
T ss_pred cc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCC-CCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcc
Confidence 44 68999999999999999999999999988874 56699999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhccC-CeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCH
Q 001076 1026 GEGEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1104 (1163)
Q Consensus 1026 Ge~E~~Ir~lF~~A~k~~-PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~ 1104 (1163)
|+++++++.+|++|.+++ |+||||||||.+.+++..... ...++..+++.+++++.. ..+++||++||+|+.|++
T Consensus 260 gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~~--~~~vivl~atnrp~sld~ 335 (693)
T KOG0730|consen 260 GETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLKP--DAKVIVLAATNRPDSLDP 335 (693)
T ss_pred cchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCcC--cCcEEEEEecCCccccCh
Confidence 999999999999999999 999999999999988866444 567889999999999863 478999999999999999
Q ss_pred HHHh-ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1105 AVVR-RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1105 aLlr-RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
+++| ||++.+.+..|+..+|.+|++.++.++++.++.++..+|..|+||+|+||..||
T Consensus 336 alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~ 394 (693)
T KOG0730|consen 336 ALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALC 394 (693)
T ss_pred hhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHH
Confidence 9999 999999999999999999999999999988899999999999999999999987
No 34
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.94 E-value=1.6e-26 Score=274.74 Aligned_cols=211 Identities=32% Similarity=0.543 Sum_probs=181.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------E
Q 001076 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------F 1012 (1163)
Q Consensus 943 e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p----------f 1012 (1163)
.+.++|++|+|++.+++.+++.+.+|+.+++.|...++. +++++|||||||||||++|+++|++++.+ |
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~-~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLK-PPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCC-CCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 346899999999999999999999999999999988754 56899999999999999999999998654 6
Q ss_pred EEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCC
Q 001076 1013 INISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1088 (1163)
Q Consensus 1013 i~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~----~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~ 1088 (1163)
+.+..+++.++|.|+.+..++.+|..|+.. .|+||||||||.++..+.........+.++++|+..|+++... .
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~--~ 332 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL--D 332 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC--C
Confidence 677778899999999999999999988764 6999999999999987765444455577889999999998643 5
Q ss_pred CEEEEEEeCCCCCCCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhC-CCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1089 RVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1089 ~VlVIaTTN~p~~Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~-~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
+++||+|||+++.||++++| ||+..|+|+.|+.++|.+||+.++... .+ + ..+..+.||+++|+..+|
T Consensus 333 ~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l--~----~~l~~~~g~~~a~~~al~ 403 (512)
T TIGR03689 333 NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL--D----ADLAEFDGDREATAAALI 403 (512)
T ss_pred ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc--h----HHHHHhcCCCHHHHHHHH
Confidence 79999999999999999999 999999999999999999999998652 22 2 223447899999998876
No 35
>CHL00176 ftsH cell division protein; Validated
Probab=99.94 E-value=1.9e-26 Score=281.41 Aligned_cols=216 Identities=40% Similarity=0.632 Sum_probs=191.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 001076 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1163)
Q Consensus 943 e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s 1022 (1163)
+...+|+|++|++++++++.+.+.. +.+++.|...+. .+++++||+||||||||+||+++|.+++.||+.++++++..
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~-~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGA-KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 3467899999999999999988765 777888877664 45689999999999999999999999999999999999988
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCC--cchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCC
Q 001076 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1163)
Q Consensus 1023 ~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s--~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1163)
.+.|.....++.+|..|+...|+||||||||.+...+.. ...+.....+++.|+..++++.. +.+++||+|||+++
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN~~~ 332 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG--NKGVIVIAATNRVD 332 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC--CCCeeEEEecCchH
Confidence 888888889999999999999999999999999865532 22344556778889999998754 36899999999999
Q ss_pred CCCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1101 ~Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
.+|++++| ||++.+.|++|+.++|.+||+.++.+..+..++++..||..|.||+|+||+.+|
T Consensus 333 ~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lv 396 (638)
T CHL00176 333 ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLL 396 (638)
T ss_pred hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHH
Confidence 99999998 999999999999999999999999988888899999999999999999999886
No 36
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.93 E-value=5.2e-25 Score=249.02 Aligned_cols=168 Identities=20% Similarity=0.267 Sum_probs=144.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHhc-----cCCeEEEEcccccc
Q 001076 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK-----IAPSVVFVDEVDSM 1055 (1163)
Q Consensus 981 ~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k-----~~PsILfIDEID~L 1055 (1163)
.+++.++|||||||||||++|++||+++|++|+.++.++|.++|+|++|+.++++|..|.. .+||||||||||.+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 4677999999999999999999999999999999999999999999999999999999975 46999999999999
Q ss_pred ccCCCCcchHHHHHHH-HHHHHHHhcCCc----------ccCCCCEEEEEEeCCCCCCCHHHHh--ccCcEEEecCCCHH
Q 001076 1056 LGRRENPGEHEAMRKM-KNEFMVNWDGLR----------TKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAP 1122 (1163)
Q Consensus 1056 ~g~r~s~~~~eal~~i-l~~LL~~Ldgl~----------~k~~~~VlVIaTTN~p~~Ld~aLlr--RFd~vI~I~~Pd~e 1122 (1163)
++++... ......++ ..+||..+|+.. .....+|+||+|||+|+.|+++|+| ||++.+ ..|+.+
T Consensus 225 ~g~r~~~-~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e 301 (413)
T PLN00020 225 AGRFGTT-QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTRE 301 (413)
T ss_pred CCCCCCC-CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHH
Confidence 9887642 22333344 479999888642 1235789999999999999999999 999865 589999
Q ss_pred HHHHHHHHHHhhCCCCChhhHHHHHHHcCC
Q 001076 1123 NREKIIRVILAKEELASDVDLEGIANMADG 1152 (1163)
Q Consensus 1123 eR~eILk~ll~k~~l~~dvdl~~LA~~TeG 1152 (1163)
+|.+|++.++++.++. ..++..|+..+.|
T Consensus 302 ~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~g 330 (413)
T PLN00020 302 DRIGVVHGIFRDDGVS-REDVVKLVDTFPG 330 (413)
T ss_pred HHHHHHHHHhccCCCC-HHHHHHHHHcCCC
Confidence 9999999999998765 5788888888776
No 37
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.93 E-value=5.5e-25 Score=270.52 Aligned_cols=217 Identities=40% Similarity=0.627 Sum_probs=191.1
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001076 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1163)
Q Consensus 942 ~e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~ 1021 (1163)
.....+|+++.|.+..++.+.+.+.. +..+..|...+. ..+++|||+||||||||++|+++|++++.+|+.++++++.
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~-~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~ 222 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhH
Confidence 34456799999999999999998876 555666655443 4457899999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCC--cchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCC
Q 001076 1022 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1163)
Q Consensus 1022 s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s--~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p 1099 (1163)
..+.|..+..++.+|..|+...|+||||||||.+..++.. .+.+.....+++.|+..|+++.. +..++||+|||++
T Consensus 223 ~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~--~~~vivIaaTN~p 300 (644)
T PRK10733 223 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRP 300 (644)
T ss_pred HhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC--CCCeeEEEecCCh
Confidence 8899999999999999999999999999999999876643 23344556788999999999854 3689999999999
Q ss_pred CCCCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1100 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1100 ~~Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
+.||++++| ||++.|.|+.|+.++|.+||+.++.+..+..++++..||+.|.||||+||.++|
T Consensus 301 ~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~ 365 (644)
T PRK10733 301 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLV 365 (644)
T ss_pred hhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHH
Confidence 999999998 999999999999999999999999998888899999999999999999999987
No 38
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.92 E-value=1.2e-24 Score=271.91 Aligned_cols=215 Identities=43% Similarity=0.749 Sum_probs=194.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 001076 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1163)
Q Consensus 944 ~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~ 1023 (1163)
..++|++|+|++++++.+.+++..++.+++.|...++ .+++++||+||||||||+||++||++++.+|+.++++++.+.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi-~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGI-EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 3578999999999999999999999999999998875 456899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCC
Q 001076 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1103 (1163)
Q Consensus 1024 ~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld 1103 (1163)
+.|..+..++.+|..|....|+||||||||.+.+.+.... .....++.+.|+..++++.. ..+++||++||.++.++
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~-~~~~~~~~~~Ll~~ld~l~~--~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT-GEVEKRVVAQLLTLMDGLKG--RGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc-chHHHHHHHHHHHHhhcccc--CCCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999987764422 23345678888888888753 36799999999999999
Q ss_pred HHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1104 EAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1104 ~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
+++++ ||+..+.++.|+.++|.+||+.+.....+..+.++..+++.|+||+++||..||
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~ 389 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALA 389 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHH
Confidence 99998 999999999999999999999998888888889999999999999999999876
No 39
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.92 E-value=8.2e-25 Score=279.15 Aligned_cols=175 Identities=20% Similarity=0.303 Sum_probs=145.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc------------------------------------
Q 001076 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW------------------------------------ 1024 (1163)
Q Consensus 981 ~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~------------------------------------ 1024 (1163)
..|++||||+||||||||+||+|||.++++||+.+++++++..+
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 36789999999999999999999999999999999999987643
Q ss_pred -----ccchHH--HHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcc-cCCCCEEEEEEe
Q 001076 1025 -----FGEGEK--YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-KDKERVLVLAAT 1096 (1163)
Q Consensus 1025 -----~Ge~E~--~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~-k~~~~VlVIaTT 1096 (1163)
.+..+. .++.+|+.|++.+||||||||||.+...... ...++.|+..|++... ....+|+|||||
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~-------~ltL~qLLneLDg~~~~~s~~~VIVIAAT 1779 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESN-------YLSLGLLVNSLSRDCERCSTRNILVIAST 1779 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccc-------eehHHHHHHHhccccccCCCCCEEEEEeC
Confidence 111222 3888999999999999999999999644211 1236788888987642 234689999999
Q ss_pred CCCCCCCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhh--CCCCC-hhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1097 NRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAK--EELAS-DVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1097 N~p~~Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k--~~l~~-dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
|+|+.||||++| |||+.|.|+.|+..+|.+++..++.. ..+.. .++++.||+.|.||||+||++||
T Consensus 1780 NRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLv 1850 (2281)
T CHL00206 1780 HIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALT 1850 (2281)
T ss_pred CCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHH
Confidence 999999999999 99999999999999999999876533 33433 36799999999999999999987
No 40
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.91 E-value=1.5e-23 Score=259.98 Aligned_cols=390 Identities=17% Similarity=0.210 Sum_probs=225.9
Q ss_pred EcchhhhhcC---ChhhHHHHHHHHhcC--CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCccccc
Q 001076 710 VKDIEKSLTG---NNDAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLH 784 (1163)
Q Consensus 710 fddid~~La~---~~~~~~~i~s~L~~L--~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~ 784 (1163)
..++..+++| .+++...++..+..+ .+++|+|.+.+|...+++...+|.+ ++.|+|+|. +.+++
T Consensus 247 ~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~-------d~~nlLkp~----L~~g~ 315 (758)
T PRK11034 247 SLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQV-------DAANLIKPL----LSSGK 315 (758)
T ss_pred eccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHH-------HHHHHHHHH----HhCCC
Confidence 3344444443 345555555554443 2345555555555544444333333 445555553 44555
Q ss_pred cccccchHHHHHhhhccccceeecCCchhHHHHHHHHHHHHhhhhhhccchhhHHHhh---------hhcCCC-Cccccc
Q 001076 785 DRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSV---------LSRNGL-DCVDLE 854 (1163)
Q Consensus 785 ~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~LpdlkgR~~Il~IHT~---------l~~~~L-~~vdLe 854 (1163)
.+| |+.+++.+++-.+..|.||.|||+ .++++.|+.+.+..|++.+.. +.+..+ .+++|.
T Consensus 316 i~v---------IgATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls 385 (758)
T PRK11034 316 IRV---------IGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELA 385 (758)
T ss_pred eEE---------EecCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHh
Confidence 555 555555555555556667777774 466666666655555554433 222333 455666
Q ss_pred chhhcccCCchhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhhhhhhhhhhh-hhhcccchhHHHHH
Q 001076 855 SLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKK-SLKDVVTENEFEKK 933 (1163)
Q Consensus 855 eLa~~tkg~sgadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~dF~~al~eikp~~~-slk~lv~~~e~ek~ 933 (1163)
.-+..+..+++..|+-|...++...+. +.. ..+..++...|.-.+..+-.+ |... ...+......++..
T Consensus 386 ~ryi~~r~lPdKaidlldea~a~~~~~---~~~--~~~~~v~~~~i~~v~~~~tgi-----p~~~~~~~~~~~l~~l~~~ 455 (758)
T PRK11034 386 VKYINDRHLPDKAIDVIDEAGARARLM---PVS--KRKKTVNVADIESVVARIARI-----PEKSVSQSDRDTLKNLGDR 455 (758)
T ss_pred hccccCccChHHHHHHHHHHHHhhccC---ccc--ccccccChhhHHHHHHHHhCC-----ChhhhhhhHHHHHHHHHHH
Confidence 677778888899998555444443332 111 111223333333333222211 1110 00000001112222
Q ss_pred HhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001076 934 LLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI 1013 (1163)
Q Consensus 934 ll~~iip~~e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi 1013 (1163)
+. ..|+|++++++.+.+.+...... + ..-.+|...+||+||||+|||++|+++|+.++.+|+
T Consensus 456 L~-------------~~ViGQ~~ai~~l~~~i~~~~~g---l--~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i 517 (758)
T PRK11034 456 LK-------------MLVFGQDKAIEALTEAIKMSRAG---L--GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELL 517 (758)
T ss_pred hc-------------ceEeCcHHHHHHHHHHHHHHhcc---c--cCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcE
Confidence 21 14679999999999988642210 0 011345557999999999999999999999999999
Q ss_pred EEeccccc-----cccccchHHHHH-----HHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCc
Q 001076 1014 NISMSSIT-----SKWFGEGEKYVK-----AVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1083 (1163)
Q Consensus 1014 ~Id~seL~-----s~~~Ge~E~~Ir-----~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~ 1083 (1163)
.+||+++. ..++|.+..++. .+....++.+.+||||||||.+ ...+.+.|+..|+...
T Consensus 518 ~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka------------~~~v~~~LLq~ld~G~ 585 (758)
T PRK11034 518 RFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA------------HPDVFNLLLQVMDNGT 585 (758)
T ss_pred EeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh------------hHHHHHHHHHHHhcCe
Confidence 99998864 344554433332 2334445667799999999966 2456677777776332
Q ss_pred cc-------CCCCEEEEEEeCCC-------------------------CCCCHHHHhccCcEEEecCCCHHHHHHHHHHH
Q 001076 1084 TK-------DKERVLVLAATNRP-------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVI 1131 (1163)
Q Consensus 1084 ~k-------~~~~VlVIaTTN~p-------------------------~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~l 1131 (1163)
.+ +-.++++|+|||.- ..+.|+|++|++.+|.|++.+.++..+|+..+
T Consensus 586 ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~ 665 (758)
T PRK11034 586 LTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKF 665 (758)
T ss_pred eecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHH
Confidence 11 12578899999831 23679999999999999999999999999888
Q ss_pred Hhh-------CCCC---ChhhHHHHHHHcC--CCCHHHHHh
Q 001076 1132 LAK-------EELA---SDVDLEGIANMAD--GYSGSDLKV 1160 (1163)
Q Consensus 1132 l~k-------~~l~---~dvdl~~LA~~Te--GySgaDLk~ 1160 (1163)
+.+ .++. ++..++.|+...- .|....|+.
T Consensus 666 l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r 706 (758)
T PRK11034 666 IVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMAR 706 (758)
T ss_pred HHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHH
Confidence 764 2222 3444566665432 344445543
No 41
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.1e-23 Score=241.89 Aligned_cols=214 Identities=29% Similarity=0.503 Sum_probs=180.2
Q ss_pred CCccc--ccCcHHHH-HHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-cEEEEeccccc
Q 001076 946 VTFDD--IGALENVK-DTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFINISMSSIT 1021 (1163)
Q Consensus 946 ~tfdd--I~Gleevk-~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~-pfi~Id~seL~ 1021 (1163)
..|++ |+|++..- ..++++...-.--|+...+.++. .-+|||||||||||||.+||.|.+-+++ +--.++.++++
T Consensus 216 f~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~-HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL 294 (744)
T KOG0741|consen 216 FNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIK-HVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEIL 294 (744)
T ss_pred CChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCcc-ceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHH
Confidence 34554 77887544 45566665555567777777743 4589999999999999999999999964 44568999999
Q ss_pred cccccchHHHHHHHHHHHhcc--------CCeEEEEccccccccCCCCcch-HHHHHHHHHHHHHHhcCCcccCCCCEEE
Q 001076 1022 SKWFGEGEKYVKAVFSLASKI--------APSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1163)
Q Consensus 1022 s~~~Ge~E~~Ir~lF~~A~k~--------~PsILfIDEID~L~g~r~s~~~-~eal~~il~~LL~~Ldgl~~k~~~~VlV 1092 (1163)
++|+|++|+.++.+|.+|..- .-.||++||||.++.+|++... ...+..+.|+||..|||...- ++|+|
T Consensus 295 ~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL--NNILV 372 (744)
T KOG0741|consen 295 NKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL--NNILV 372 (744)
T ss_pred HHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh--hcEEE
Confidence 999999999999999988532 3459999999999988876544 557788999999999998643 68999
Q ss_pred EEEeCCCCCCCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhC----CCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1093 LAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKE----ELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1093 IaTTN~p~~Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~----~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
|+-||+++.+|++++| ||...+++.+||...|.+|++.+..++ .+..|+|+++||.+|..|||++|+-|+
T Consensus 373 IGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglV 448 (744)
T KOG0741|consen 373 IGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLV 448 (744)
T ss_pred EeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHH
Confidence 9999999999999999 999999999999999999999998874 367899999999999999999998775
No 42
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.89 E-value=1.7e-22 Score=252.28 Aligned_cols=407 Identities=20% Similarity=0.260 Sum_probs=255.9
Q ss_pred HHHHHHHHHHHhhccCCCeEE--------------------------------EEcchhhhhcC---ChhhHHHHHHHHh
Q 001076 688 LAINELFEVALNESKSSPLIV--------------------------------FVKDIEKSLTG---NNDAYGALKSKLE 732 (1163)
Q Consensus 688 ~~l~~l~evl~~e~k~~P~II--------------------------------ffddid~~La~---~~~~~~~i~s~L~ 732 (1163)
..+++++++|++..+++|+++ |.-++..++++ .+++...|+..+.
T Consensus 189 ~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~ 268 (731)
T TIGR02639 189 DELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVS 268 (731)
T ss_pred HHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHH
Confidence 345566677776666666665 34455566653 4677788888887
Q ss_pred cCC--CCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCccccccccccchHHHHHhhhccccceeecCC
Q 001076 733 NLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLP 810 (1163)
Q Consensus 733 ~L~--g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P 810 (1163)
.+. +++|+|.+..|...+++..++|++ ++.++|+|. +.+|+.+| |+.+++.+++-.+.
T Consensus 269 ~~~~~~~~ILfiDEih~l~~~g~~~~~~~-------~~~~~L~~~----l~~g~i~~---------IgaTt~~e~~~~~~ 328 (731)
T TIGR02639 269 EIEKEPNAILFIDEIHTIVGAGATSGGSM-------DASNLLKPA----LSSGKLRC---------IGSTTYEEYKNHFE 328 (731)
T ss_pred HHhccCCeEEEEecHHHHhccCCCCCccH-------HHHHHHHHH----HhCCCeEE---------EEecCHHHHHHHhh
Confidence 663 477888888887776666666666 677778774 66777777 78877777777777
Q ss_pred chhHHHHHHHHHHHHhhhhhhccchhhHHHhh-h--------hcCCC-CcccccchhhcccCCchhhhhhHHhHHhh-hh
Q 001076 811 QDEALLSDWKQQLERDVETLKGQSNIISIRSV-L--------SRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALS-HH 879 (1163)
Q Consensus 811 ~DeALlRRferq~e~~LpdlkgR~~Il~IHT~-l--------~~~~L-~~vdLeeLa~~tkg~sgadIe~Lv~~Aas-~A 879 (1163)
.|.||+|||. .+++..|+.+.+..|++-+.. + .+..+ .++.|..-++.++.+++..|+-+ .+|.. ..
T Consensus 329 ~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~ll-d~a~a~~~ 406 (731)
T TIGR02639 329 KDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVI-DEAGASFR 406 (731)
T ss_pred hhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHH-HHhhhhhh
Confidence 7888888886 577777777766666664432 1 12222 33444444455566677778744 44443 33
Q ss_pred hhhcCCCCCCCCcccccccchhhhHHHHHhhhhhhh--hhhh-hhhcccchhHHHHHHhcCCCCCCCCCCCcccccCcHH
Q 001076 880 FMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESK--SLKK-SLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALEN 956 (1163)
Q Consensus 880 l~r~~~qi~~~~kl~Id~~sI~v~~~dF~~al~eik--p~~~-slk~lv~~~e~ek~ll~~iip~~e~~~tfddI~Glee 956 (1163)
+.. .. ..+ ..+...++..+..... |... ...+.....+++..+.. .|+|+++
T Consensus 407 ~~~-~~----~~~-------~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~-------------~v~GQ~~ 461 (731)
T TIGR02639 407 LRP-KA----KKK-------ANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKA-------------KIFGQDE 461 (731)
T ss_pred cCc-cc----ccc-------cccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhc-------------ceeCcHH
Confidence 321 10 111 2234444444433322 1111 00000111122222222 4679999
Q ss_pred HHHHHHHHHHcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-----ccccch
Q 001076 957 VKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-----KWFGEG 1028 (1163)
Q Consensus 957 vk~~L~e~V~lpl~~pelf~k~~l---~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s-----~~~Ge~ 1028 (1163)
+++.+.+.+... +.++ .+|...+||+||+|||||+||++||+.++.+++.++|+++.. .++|.+
T Consensus 462 ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~ 533 (731)
T TIGR02639 462 AIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAP 533 (731)
T ss_pred HHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCC
Confidence 999998887532 1222 234445899999999999999999999999999999988643 233433
Q ss_pred HHHH-----HHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCccc-------CCCCEEEEEEe
Q 001076 1029 EKYV-----KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DKERVLVLAAT 1096 (1163)
Q Consensus 1029 E~~I-----r~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k-------~~~~VlVIaTT 1096 (1163)
..++ ..+....++.+.+||||||||.+ ...+.+.|+..++....+ +-.++++|+||
T Consensus 534 ~gyvg~~~~~~l~~~~~~~p~~VvllDEieka------------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Ts 601 (731)
T TIGR02639 534 PGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA------------HPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTS 601 (731)
T ss_pred CCCcccchhhHHHHHHHhCCCeEEEEechhhc------------CHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECC
Confidence 3322 23455556677899999999966 244666777777653221 12468899999
Q ss_pred CCC-------------------------CCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhC-------C--C-CChh
Q 001076 1097 NRP-------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-------E--L-ASDV 1141 (1163)
Q Consensus 1097 N~p-------------------------~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~-------~--l-~~dv 1141 (1163)
|.. ..+.|+|+.||+.+|.|.+.+.++..+|++..+.+. + + .++.
T Consensus 602 n~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~ 681 (731)
T TIGR02639 602 NAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDD 681 (731)
T ss_pred CcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHH
Confidence 763 136788999999999999999999999999988641 1 1 1445
Q ss_pred hHHHHHHHc--CCCCHHHHHhh
Q 001076 1142 DLEGIANMA--DGYSGSDLKVD 1161 (1163)
Q Consensus 1142 dl~~LA~~T--eGySgaDLk~L 1161 (1163)
.++.|+... ..|....|+.+
T Consensus 682 a~~~La~~~~~~~~GaR~l~r~ 703 (731)
T TIGR02639 682 AKKYLAEKGYDEEFGARPLARV 703 (731)
T ss_pred HHHHHHHhCCCcccCchHHHHH
Confidence 566677653 24555566543
No 43
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=7.3e-23 Score=228.50 Aligned_cols=187 Identities=20% Similarity=0.218 Sum_probs=148.5
Q ss_pred eeeecCCCCCCCCCCC--CCCCCCC-cccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhc-CC
Q 001076 645 GVRFDRSIPEGNNLGG--FCEDDHG-FFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT-GN 720 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~~--~c~~~~~-ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La-~~ 720 (1163)
||+..+|++||+||.+ -..+.+. |.--++.-- ..|+.||.-|+++.+|+++-+ +.|+||||||||. ++ ++
T Consensus 187 GVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl--VqKYiGEGaRlVRelF~lAre---kaPsIIFiDEIDA-Ig~kR 260 (406)
T COG1222 187 GVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL--VQKYIGEGARLVRELFELARE---KAPSIIFIDEIDA-IGAKR 260 (406)
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH--HHHHhccchHHHHHHHHHHhh---cCCeEEEEechhh-hhccc
Confidence 7888889999999981 1122222 443334321 368899999999999999988 9999999999999 55 21
Q ss_pred h----hhHHHHHHHHhcC---------CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCcccccccc
Q 001076 721 N----DAYGALKSKLENL---------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRS 787 (1163)
Q Consensus 721 ~----~~~~~i~s~L~~L---------~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~ 787 (1163)
- ---.-++.||..| +|+|=||.||||+|. |||
T Consensus 261 ~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~----------------------LDP------------- 305 (406)
T COG1222 261 FDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDI----------------------LDP------------- 305 (406)
T ss_pred ccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccc----------------------cCh-------------
Confidence 1 1122366666665 779999999998776 666
Q ss_pred ccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhh-hhcCCCCcccccchhhcccCCc
Q 001076 788 KETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLT 864 (1163)
Q Consensus 788 ~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~-l~~~~L~~vdLeeLa~~tkg~s 864 (1163)
||+| ||+|.+||+|||++||.+|++|||+ |.-. .++||+.||..|.+++
T Consensus 306 --------------------------ALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~--~dvd~e~la~~~~g~s 357 (406)
T COG1222 306 --------------------------ALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA--DDVDLELLARLTEGFS 357 (406)
T ss_pred --------------------------hhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc--cCcCHHHHHHhcCCCc
Confidence 8999 9999999999999999999999998 6432 7899999999999999
Q ss_pred hhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhhhhhhh
Q 001076 865 TEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESK 915 (1163)
Q Consensus 865 gadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~dF~~al~eik 915 (1163)
||||+++|++|..+|++... ..++..||+.|..++.
T Consensus 358 GAdlkaictEAGm~AiR~~R---------------~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 358 GADLKAICTEAGMFAIRERR---------------DEVTMEDFLKAVEKVV 393 (406)
T ss_pred hHHHHHHHHHHhHHHHHhcc---------------CeecHHHHHHHHHHHH
Confidence 99999999999999998543 2457889998876664
No 44
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.86 E-value=4e-21 Score=242.31 Aligned_cols=430 Identities=17% Similarity=0.204 Sum_probs=275.6
Q ss_pred HHHHHHHHHHhhccCCCeEE--------------------------------EEcchhhhhcC---ChhhHHHHHHHHhc
Q 001076 689 AINELFEVALNESKSSPLIV--------------------------------FVKDIEKSLTG---NNDAYGALKSKLEN 733 (1163)
Q Consensus 689 ~l~~l~evl~~e~k~~P~II--------------------------------ffddid~~La~---~~~~~~~i~s~L~~ 733 (1163)
.|++++++|++..+++|+++ |..|+..++|+ .++|...|+..++.
T Consensus 195 ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e 274 (852)
T TIGR03345 195 EIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDE 274 (852)
T ss_pred HHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHH
Confidence 49999999999988999888 45566666653 68999999999997
Q ss_pred CC---CCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCccccccccccchHHHHHhhhccccceeecCC
Q 001076 734 LP---SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLP 810 (1163)
Q Consensus 734 L~---g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P 810 (1163)
+. +++|+|.+.+|...+++.+ .|.+ |+.|+|+|+ +.+|+.+| ||.+++++++-.+.
T Consensus 275 ~~~~~~~~ILfIDEih~l~~~g~~-~~~~-------d~~n~Lkp~----l~~G~l~~---------IgaTT~~e~~~~~~ 333 (852)
T TIGR03345 275 VKASPQPIILFIDEAHTLIGAGGQ-AGQG-------DAANLLKPA----LARGELRT---------IAATTWAEYKKYFE 333 (852)
T ss_pred HHhcCCCeEEEEeChHHhccCCCc-cccc-------cHHHHhhHH----hhCCCeEE---------EEecCHHHHhhhhh
Confidence 73 5899999999998877653 2344 778899985 88999999 99999999999999
Q ss_pred chhHHHHHHHHHHHHhhhhhhccchhhHHHhh---------hhcCCC-CcccccchhhcccCCchhhhhhHHhHHhhhhh
Q 001076 811 QDEALLSDWKQQLERDVETLKGQSNIISIRSV---------LSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHF 880 (1163)
Q Consensus 811 ~DeALlRRferq~e~~LpdlkgR~~Il~IHT~---------l~~~~L-~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al 880 (1163)
.|.||+|||. .+++.-|+...+..|++-+.. +.+..+ ..+.|..-++.++.+++..|+-|...++..++
T Consensus 334 ~d~AL~rRf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~ 412 (852)
T TIGR03345 334 KDPALTRRFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVAL 412 (852)
T ss_pred ccHHHHHhCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHH
Confidence 9999999996 678888887776666554443 222223 44566666777778899999977777676666
Q ss_pred hhcCCCCC-CC--Ccc--------cc--------ccc-c---hh-------hhHHHH----Hh-----------------
Q 001076 881 MHCSEAPG-KD--AKL--------KI--------STE-S---IM-------YGLNIL----QG----------------- 909 (1163)
Q Consensus 881 ~r~~~qi~-~~--~kl--------~I--------d~~-s---I~-------v~~~dF----~~----------------- 909 (1163)
.+...+.. .. .++ .. +.. . +. -....+ +.
T Consensus 413 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (852)
T TIGR03345 413 SQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKELVEAILALRAELEA 492 (852)
T ss_pred hccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 53222110 00 000 00 000 0 00 000000 00
Q ss_pred ------------------hhhhhhhhhhh---hhcccchhHHHHHHhcC-CCCCCCCCC-----------Cc-ccccCcH
Q 001076 910 ------------------IQSESKSLKKS---LKDVVTENEFEKKLLAD-VIPPSDIGV-----------TF-DDIGALE 955 (1163)
Q Consensus 910 ------------------al~eikp~~~s---lk~lv~~~e~ek~ll~~-iip~~e~~~-----------tf-ddI~Gle 955 (1163)
...+...+... ....+...++...+..+ -||...... .+ ..++|++
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~ 572 (852)
T TIGR03345 493 DADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQD 572 (852)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChH
Confidence 00000000000 00113333333332221 133221110 11 3588999
Q ss_pred HHHHHHHHHHHcccCChhhhhcCCCC---CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-----cc
Q 001076 956 NVKDTLKELVMLPLQRPELFCKGQLT---KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-----KW 1024 (1163)
Q Consensus 956 evk~~L~e~V~lpl~~pelf~k~~l~---~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s-----~~ 1024 (1163)
.+++.+.+.+.... .++. +|...+||+||+|+|||+||++||..+ ...|+.+||+++.. .+
T Consensus 573 ~Av~~v~~~i~~~~--------~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l 644 (852)
T TIGR03345 573 HALEAIAERIRTAR--------AGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRL 644 (852)
T ss_pred HHHHHHHHHHHHHh--------cCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccc
Confidence 99999998886421 2222 333348999999999999999999999 45889999987642 23
Q ss_pred ccchHHHHH-----HHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccC-------CCCEEE
Q 001076 1025 FGEGEKYVK-----AVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD-------KERVLV 1092 (1163)
Q Consensus 1025 ~Ge~E~~Ir-----~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~-------~~~VlV 1092 (1163)
+|.+.+++. .+....++.+.+||+|||||.. ...+.+.|++.++....++ -.+.+|
T Consensus 645 ~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka------------~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~ii 712 (852)
T TIGR03345 645 KGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA------------HPDVLELFYQVFDKGVMEDGEGREIDFKNTVI 712 (852)
T ss_pred cCCCCCcccccccchHHHHHHhCCCcEEEEechhhc------------CHHHHHHHHHHhhcceeecCCCcEEeccccEE
Confidence 444333332 2445556778899999999854 2445566666665432211 257899
Q ss_pred EEEeCCC-----------------------------CCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhC--------
Q 001076 1093 LAATNRP-----------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-------- 1135 (1163)
Q Consensus 1093 IaTTN~p-----------------------------~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~-------- 1135 (1163)
|+|||.. ..+.|+|++|++ +|.|.+.+.++..+|++..+.+.
T Consensus 713 I~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~ 791 (852)
T TIGR03345 713 LLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENH 791 (852)
T ss_pred EEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999851 126688899996 89999999999999998877541
Q ss_pred CC---CChhhHHHHHHHcCC--CCHHHHHhh
Q 001076 1136 EL---ASDVDLEGIANMADG--YSGSDLKVD 1161 (1163)
Q Consensus 1136 ~l---~~dvdl~~LA~~TeG--ySgaDLk~L 1161 (1163)
++ .++..++.|+....+ |.+..|+.+
T Consensus 792 gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~ 822 (852)
T TIGR03345 792 GAELVYSEALVEHIVARCTEVESGARNIDAI 822 (852)
T ss_pred CceEEECHHHHHHHHHHcCCCCCChHHHHHH
Confidence 22 244446677776643 456666554
No 45
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.84 E-value=4.7e-20 Score=232.99 Aligned_cols=433 Identities=18% Similarity=0.227 Sum_probs=268.3
Q ss_pred HHHHHHHHHHHHhhccCCCeEE--------------------------------EEcchhhhhcC---ChhhHHHHHHHH
Q 001076 687 KLAINELFEVALNESKSSPLIV--------------------------------FVKDIEKSLTG---NNDAYGALKSKL 731 (1163)
Q Consensus 687 ~~~l~~l~evl~~e~k~~P~II--------------------------------ffddid~~La~---~~~~~~~i~s~L 731 (1163)
+..++++.++|++..+++|+++ |.-|+..+++| +++|..+|+..+
T Consensus 185 ~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~ 264 (821)
T CHL00095 185 EKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIF 264 (821)
T ss_pred HHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHH
Confidence 4567888888888888888777 55566677774 689999999999
Q ss_pred hcC--CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCccccccccccchHHHHHhhhccccceeecC
Q 001076 732 ENL--PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQL 809 (1163)
Q Consensus 732 ~~L--~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~ 809 (1163)
..+ .+++|+|.+..|...+++.+. |++ ++.|+|+|. +.+|+.+| |+.+++.+++...
T Consensus 265 ~~~~~~~~~ILfiDEih~l~~~g~~~-g~~-------~~a~lLkp~----l~rg~l~~---------IgaTt~~ey~~~i 323 (821)
T CHL00095 265 DEIQENNNIILVIDEVHTLIGAGAAE-GAI-------DAANILKPA----LARGELQC---------IGATTLDEYRKHI 323 (821)
T ss_pred HHHHhcCCeEEEEecHHHHhcCCCCC-Ccc-------cHHHHhHHH----HhCCCcEE---------EEeCCHHHHHHHH
Confidence 877 458999999999988776543 344 788999985 78888899 9999999999999
Q ss_pred CchhHHHHHHHHHHHHhhhhhhc--------cchhhHHHhh-hhcCCC-CcccccchhhcccCCchhhhhhHHhHHhhhh
Q 001076 810 PQDEALLSDWKQQLERDVETLKG--------QSNIISIRSV-LSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHH 879 (1163)
Q Consensus 810 P~DeALlRRferq~e~~Lpdlkg--------R~~Il~IHT~-l~~~~L-~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~A 879 (1163)
..|.+|.|||+. +++.-|+... +..+.++|.+ +.+..+ ..+.|..-++.++.+++..|+-|...++...
T Consensus 324 e~D~aL~rRf~~-I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~~ 402 (821)
T CHL00095 324 EKDPALERRFQP-VYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVR 402 (821)
T ss_pred hcCHHHHhcceE-EecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHHH
Confidence 999999999975 4444444332 2334444543 222222 4445555666667788889997777766666
Q ss_pred hhhcCCC-CCCC--Ccc-c--------ccccc------hhhhHHHHHhhhhhhhhhhh------hhhcccchhHHHHHHh
Q 001076 880 FMHCSEA-PGKD--AKL-K--------ISTES------IMYGLNILQGIQSESKSLKK------SLKDVVTENEFEKKLL 935 (1163)
Q Consensus 880 l~r~~~q-i~~~--~kl-~--------Id~~s------I~v~~~dF~~al~eikp~~~------slk~lv~~~e~ek~ll 935 (1163)
+.....+ .... .++ . +.... +......++..+........ .....+...+....+.
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~ 482 (821)
T CHL00095 403 LINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEEKRLEVPVVTEEDIAEIVS 482 (821)
T ss_pred hhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHHHH
Confidence 6432111 0000 000 0 00000 00000000000000000000 0001233333333222
Q ss_pred cCC-CCCCCCCC-----------C-cccccCcHHHHHHHHHHHHcccCChhhhhcCCC---CCCCceEEEEcCCCChHHH
Q 001076 936 ADV-IPPSDIGV-----------T-FDDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTM 999 (1163)
Q Consensus 936 ~~i-ip~~e~~~-----------t-fddI~Gleevk~~L~e~V~lpl~~pelf~k~~l---~~p~kgVLL~GPPGTGKT~ 999 (1163)
.+. ||...... . -..|+|++++++.+...+... +.++ .+|...+||+||+|+|||+
T Consensus 483 ~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKt~ 554 (821)
T CHL00095 483 AWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRA--------RVGLKNPNRPIASFLFSGPTGVGKTE 554 (821)
T ss_pred HHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHH--------hhcccCCCCCceEEEEECCCCCcHHH
Confidence 211 22211100 1 135889999999998888542 1122 3344458999999999999
Q ss_pred HHHHHHHHh---CCcEEEEeccccc-----cccccchHHHH-----HHHHHHHhccCCeEEEEccccccccCCCCcchHH
Q 001076 1000 LAKAVATEA---GANFINISMSSIT-----SKWFGEGEKYV-----KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHE 1066 (1163)
Q Consensus 1000 LArALA~eL---g~pfi~Id~seL~-----s~~~Ge~E~~I-----r~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~e 1066 (1163)
||++||+.+ +.+++.+|++++. +.++|.+.+++ ..+....++.+.+||+|||||.+
T Consensus 555 lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka----------- 623 (821)
T CHL00095 555 LTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA----------- 623 (821)
T ss_pred HHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC-----------
Confidence 999999998 4789999998864 23334433332 23556666777799999999965
Q ss_pred HHHHHHHHHHHHhcCCccc-------CCCCEEEEEEeCCCC-------------------------------------CC
Q 001076 1067 AMRKMKNEFMVNWDGLRTK-------DKERVLVLAATNRPF-------------------------------------DL 1102 (1163)
Q Consensus 1067 al~~il~~LL~~Ldgl~~k-------~~~~VlVIaTTN~p~-------------------------------------~L 1102 (1163)
...+.+.|+..++....+ +-.+.++|+|||... .+
T Consensus 624 -~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f 702 (821)
T CHL00095 624 -HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFF 702 (821)
T ss_pred -CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhc
Confidence 245667777777643211 125789999988421 13
Q ss_pred CHHHHhccCcEEEecCCCHHHHHHHHHHHHhhC-------CCC---ChhhHHHHHHHc-C-CCCHHHHHhh
Q 001076 1103 DEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-------ELA---SDVDLEGIANMA-D-GYSGSDLKVD 1161 (1163)
Q Consensus 1103 d~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~-------~l~---~dvdl~~LA~~T-e-GySgaDLk~L 1161 (1163)
.|+|++|++.+|.|.+.+.++..+|++..+.+. ++. ++...+.|+... + .|.+..|+.+
T Consensus 703 ~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~ 773 (821)
T CHL00095 703 RPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRA 773 (821)
T ss_pred CHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHH
Confidence 467899999999999999999999999888642 111 334456666652 1 3445555543
No 46
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.83 E-value=6.3e-20 Score=232.04 Aligned_cols=404 Identities=19% Similarity=0.249 Sum_probs=252.7
Q ss_pred HHHHHHHHHHhhccCCCeEE--------------------------------EEcchhhhhcC---ChhhHHHHHHHHhc
Q 001076 689 AINELFEVALNESKSSPLIV--------------------------------FVKDIEKSLTG---NNDAYGALKSKLEN 733 (1163)
Q Consensus 689 ~l~~l~evl~~e~k~~P~II--------------------------------ffddid~~La~---~~~~~~~i~s~L~~ 733 (1163)
.|++++++|+++.+++|+++ |+-++..++++ .+++...|+..|..
T Consensus 186 ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~ 265 (857)
T PRK10865 186 EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLND 265 (857)
T ss_pred HHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHH
Confidence 49999999999999999988 56677777764 58899999999887
Q ss_pred C---CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCccccccccccchHHHHHhhhccccceeecCC
Q 001076 734 L---PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLP 810 (1163)
Q Consensus 734 L---~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P 810 (1163)
+ .+++|+|.+..|...+++++ .|+| |+.|+|+|. +.+|+.+| |+.++.++++..+.
T Consensus 266 ~~~~~~~~ILfIDEih~l~~~~~~-~~~~-------d~~~~lkp~----l~~g~l~~---------IgaTt~~e~r~~~~ 324 (857)
T PRK10865 266 LAKQEGNVILFIDELHTMVGAGKA-DGAM-------DAGNMLKPA----LARGELHC---------VGATTLDEYRQYIE 324 (857)
T ss_pred HHHcCCCeEEEEecHHHhccCCCC-ccch-------hHHHHhcch----hhcCCCeE---------EEcCCCHHHHHHhh
Confidence 5 46899999999999888765 3556 889999985 78999999 99999999999999
Q ss_pred chhHHHHHHHHHHHHhhhhhhccchhhHHHhh-hh--------cCCC-CcccccchhhcccCCchhhhhhHHhHHhhhhh
Q 001076 811 QDEALLSDWKQQLERDVETLKGQSNIISIRSV-LS--------RNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHF 880 (1163)
Q Consensus 811 ~DeALlRRferq~e~~LpdlkgR~~Il~IHT~-l~--------~~~L-~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al 880 (1163)
.|.||+|||+ .+....|+...+..|++-... +. +..+ ..+.|..-+..++.|++..++-+...++...+
T Consensus 325 ~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~~rl 403 (857)
T PRK10865 325 KDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRM 403 (857)
T ss_pred hcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhccccc
Confidence 9999999997 466777776666666654432 21 1111 23456666677788899988866555555444
Q ss_pred hhcCCCC-CC--CCc---c-----cccccc-h---------hhh----HHHHHhhhhhhh----------hhhhhhh---
Q 001076 881 MHCSEAP-GK--DAK---L-----KISTES-I---------MYG----LNILQGIQSESK----------SLKKSLK--- 922 (1163)
Q Consensus 881 ~r~~~qi-~~--~~k---l-----~Id~~s-I---------~v~----~~dF~~al~eik----------p~~~slk--- 922 (1163)
.....|. .. ... + .+..+. + .-. ...+.......+ .....+.
T Consensus 404 ~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~~~ele~l~ 483 (857)
T PRK10865 404 QIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAK 483 (857)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3211110 00 000 0 000000 0 000 000000000000 0000000
Q ss_pred ---------------------------------------------cccchhHHHHHHhcC-CCCCCCCC-----------
Q 001076 923 ---------------------------------------------DVVTENEFEKKLLAD-VIPPSDIG----------- 945 (1163)
Q Consensus 923 ---------------------------------------------~lv~~~e~ek~ll~~-iip~~e~~----------- 945 (1163)
..+..++....+..+ -||.....
T Consensus 484 ~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~~~~~l~~l~ 563 (857)
T PRK10865 484 IAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESEREKLLRME 563 (857)
T ss_pred HHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHHHHHHHCCCchhhhhhHHHHHHHHH
Confidence 001111111111000 01211110
Q ss_pred -CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCC---CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001076 946 -VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLT---KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1163)
Q Consensus 946 -~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~---~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~s 1018 (1163)
.-+..++|++.+++.+...+... +.++. +|...+||+||+|||||++|++||+.+ +.+|+.++|+
T Consensus 564 ~~l~~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~s 635 (857)
T PRK10865 564 QELHHRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMS 635 (857)
T ss_pred HHhCCeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhH
Confidence 11346889999999998888642 11222 333468999999999999999999987 5689999998
Q ss_pred cccc-----ccccchHHHH-----HHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcc----
Q 001076 1019 SITS-----KWFGEGEKYV-----KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT---- 1084 (1163)
Q Consensus 1019 eL~s-----~~~Ge~E~~I-----r~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~---- 1084 (1163)
++.. ..+|.+..++ ..+....++.+.+||||||||.+ . ..+.+.|+..++....
T Consensus 636 e~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-----~-------~~v~~~Ll~ile~g~l~d~~ 703 (857)
T PRK10865 636 EFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-----H-------PDVFNILLQVLDDGRLTDGQ 703 (857)
T ss_pred HhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-----C-------HHHHHHHHHHHhhCceecCC
Confidence 7643 2233332222 12333334555699999999966 1 3344555555542211
Q ss_pred ---cCCCCEEEEEEeCCC-------------------------CCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhh
Q 001076 1085 ---KDKERVLVLAATNRP-------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1134 (1163)
Q Consensus 1085 ---k~~~~VlVIaTTN~p-------------------------~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k 1134 (1163)
.+-.+.+||+|||.. ..+.|+|++|++.++.|.+++.++..+|++.++.+
T Consensus 704 gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 704 GRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred ceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 112456789999862 23567999999999999999999999999988865
No 47
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.82 E-value=2.1e-19 Score=227.80 Aligned_cols=431 Identities=19% Similarity=0.247 Sum_probs=269.6
Q ss_pred HHHHHHHHHHhhccCCCeEE--------------------------------EEcchhhhhcC---ChhhHHHHHHHHhc
Q 001076 689 AINELFEVALNESKSSPLIV--------------------------------FVKDIEKSLTG---NNDAYGALKSKLEN 733 (1163)
Q Consensus 689 ~l~~l~evl~~e~k~~P~II--------------------------------ffddid~~La~---~~~~~~~i~s~L~~ 733 (1163)
.|++++++|++..+++|+++ |+-|+..++++ .+++...|+..|..
T Consensus 181 ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~ 260 (852)
T TIGR03346 181 EIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNE 260 (852)
T ss_pred HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHH
Confidence 58999999999888888888 45566776654 57888888888887
Q ss_pred C---CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCccccccccccchHHHHHhhhccccceeecCC
Q 001076 734 L---PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLP 810 (1163)
Q Consensus 734 L---~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P 810 (1163)
+ .+++|||++.+|...+++++. |++ |+.|+|+|+ +.+++.+| |+.++.++++..+.
T Consensus 261 ~~~~~~~~ILfIDEih~l~~~g~~~-~~~-------d~~~~Lk~~----l~~g~i~~---------IgaTt~~e~r~~~~ 319 (852)
T TIGR03346 261 VTKSEGQIILFIDELHTLVGAGKAE-GAM-------DAGNMLKPA----LARGELHC---------IGATTLDEYRKYIE 319 (852)
T ss_pred HHhcCCCeEEEeccHHHhhcCCCCc-chh-------HHHHHhchh----hhcCceEE---------EEeCcHHHHHHHhh
Confidence 6 358999999999888766643 344 678899885 67888888 99999999998888
Q ss_pred chhHHHHHHHHHHHHhhhhhhccchhhHHHhh-h--------hcCCC-CcccccchhhcccCCchhhhhhHHhHHhhhhh
Q 001076 811 QDEALLSDWKQQLERDVETLKGQSNIISIRSV-L--------SRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHF 880 (1163)
Q Consensus 811 ~DeALlRRferq~e~~LpdlkgR~~Il~IHT~-l--------~~~~L-~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al 880 (1163)
.|.|+.|||+. +.++.|+.+.+..|++.... + .+..+ .++.|..-++.++.+++..|+-|...++...+
T Consensus 320 ~d~al~rRf~~-i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~ 398 (852)
T TIGR03346 320 KDAALERRFQP-VFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRM 398 (852)
T ss_pred cCHHHHhcCCE-EEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHh
Confidence 99999999964 67777777766666665433 2 22222 55677888888889999999966555555444
Q ss_pred hhcC-CCCCC--CCcc--------ccccc-----------------chhhhHHHH-----------------H-------
Q 001076 881 MHCS-EAPGK--DAKL--------KISTE-----------------SIMYGLNIL-----------------Q------- 908 (1163)
Q Consensus 881 ~r~~-~qi~~--~~kl--------~Id~~-----------------sI~v~~~dF-----------------~------- 908 (1163)
.... |+... ..++ .+..+ .++...... .
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (852)
T TIGR03346 399 EIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVR 478 (852)
T ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3211 10000 0000 00000 000000000 0
Q ss_pred -------------hh-----------hhhhhhhhhh---------hhcccchhHHHHHHhcC-CCCCCCCC---------
Q 001076 909 -------------GI-----------QSESKSLKKS---------LKDVVTENEFEKKLLAD-VIPPSDIG--------- 945 (1163)
Q Consensus 909 -------------~a-----------l~eikp~~~s---------lk~lv~~~e~ek~ll~~-iip~~e~~--------- 945 (1163)
.+ ..++..+... ....+..++....+..+ -+|.....
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~ 558 (852)
T TIGR03346 479 LELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLH 558 (852)
T ss_pred HHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 00 0000000000 00113333333332222 12221110
Q ss_pred ---CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 001076 946 ---VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINIS 1016 (1163)
Q Consensus 946 ---~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l---~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id 1016 (1163)
.-...++|++.+++.+...+.... .++ .+|...+||+||+|||||++|++||..+ +.+++.+|
T Consensus 559 l~~~l~~~v~GQ~~av~~v~~~i~~~~--------~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d 630 (852)
T TIGR03346 559 MEEVLHERVVGQDEAVEAVSDAIRRSR--------AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRID 630 (852)
T ss_pred HHHHhhcccCCChHHHHHHHHHHHHHh--------ccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEe
Confidence 012458999999999999886421 122 2455569999999999999999999988 57899999
Q ss_pred cccccc-----ccccchHHHH-----HHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCccc-
Q 001076 1017 MSSITS-----KWFGEGEKYV-----KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK- 1085 (1163)
Q Consensus 1017 ~seL~s-----~~~Ge~E~~I-----r~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k- 1085 (1163)
|+++.. .++|.+.+++ ..+....++.+.+||||||||.+ ...+.+.|+..++....+
T Consensus 631 ~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka------------~~~v~~~Ll~~l~~g~l~d 698 (852)
T TIGR03346 631 MSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA------------HPDVFNVLLQVLDDGRLTD 698 (852)
T ss_pred chhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC------------CHHHHHHHHHHHhcCceec
Confidence 987643 2333332222 23444556667789999999966 244556666666432211
Q ss_pred ------CCCCEEEEEEeCCCC-------------------------CCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhh
Q 001076 1086 ------DKERVLVLAATNRPF-------------------------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1134 (1163)
Q Consensus 1086 ------~~~~VlVIaTTN~p~-------------------------~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k 1134 (1163)
+-.+.+||+|||... .+.++|+.|++.++.|.+++.++..+|+...+..
T Consensus 699 ~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~ 778 (852)
T TIGR03346 699 GQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGR 778 (852)
T ss_pred CCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHH
Confidence 125678999998721 2557888899999999999999999999988763
Q ss_pred -------CCC---CChhhHHHHHHHcC--CCCHHHHHhh
Q 001076 1135 -------EEL---ASDVDLEGIANMAD--GYSGSDLKVD 1161 (1163)
Q Consensus 1135 -------~~l---~~dvdl~~LA~~Te--GySgaDLk~L 1161 (1163)
.++ .++..++.|++... .|....|+.+
T Consensus 779 l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~ 817 (852)
T TIGR03346 779 LRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRA 817 (852)
T ss_pred HHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHH
Confidence 111 24444566666532 4555666654
No 48
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.5e-20 Score=209.24 Aligned_cols=203 Identities=20% Similarity=0.215 Sum_probs=161.1
Q ss_pred eeeecCCCCCCCCCC-----CCCCCCCCcccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcC
Q 001076 645 GVRFDRSIPEGNNLG-----GFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG 719 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~-----~~c~~~~~ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~ 719 (1163)
||...+|+++|+||- .+|. .-||---...- .|||.||+|.+++.||+++-- .-|++|||||||.+-.+
T Consensus 247 gvLm~GPPGTGKTlLAKAvATEc~--tTFFNVSsstl--tSKwRGeSEKlvRlLFemARf---yAPStIFiDEIDslcs~ 319 (491)
T KOG0738|consen 247 GVLMVGPPGTGKTLLAKAVATECG--TTFFNVSSSTL--TSKWRGESEKLVRLLFEMARF---YAPSTIFIDEIDSLCSQ 319 (491)
T ss_pred eeeeeCCCCCcHHHHHHHHHHhhc--CeEEEechhhh--hhhhccchHHHHHHHHHHHHH---hCCceeehhhHHHHHhc
Confidence 455567999999985 7886 33674333332 599999999999999999876 89999999999995552
Q ss_pred --C---hhhHHHHHHHHhcC-CC------C---EEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCccccc
Q 001076 720 --N---NDAYGALKSKLENL-PS------N---VVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLH 784 (1163)
Q Consensus 720 --~---~~~~~~i~s~L~~L-~g------~---VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~ 784 (1163)
+ -+.-.++|+.|+-. .| + |.|+.||| +|.++|
T Consensus 320 RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN------------------------------~PWdiD--- 366 (491)
T KOG0738|consen 320 RGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATN------------------------------FPWDID--- 366 (491)
T ss_pred CCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccC------------------------------CCcchH---
Confidence 2 23334799988765 22 4 88889998 555555
Q ss_pred cccccchHHHHHhhhccccceeecCCchhHHHHHHHHHHHHhhhhhhccchhhHHHhhhhcCCC-CcccccchhhcccCC
Q 001076 785 DRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTL 863 (1163)
Q Consensus 785 ~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~LpdlkgR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~ 863 (1163)
|||||||++.++++||+.++|..+++|- +..-.+ ++++|+.|+..+.||
T Consensus 367 ----------------------------EAlrRRlEKRIyIPLP~~~~R~~Li~~~--l~~~~~~~~~~~~~lae~~eGy 416 (491)
T KOG0738|consen 367 ----------------------------EALRRRLEKRIYIPLPDAEARSALIKIL--LRSVELDDPVNLEDLAERSEGY 416 (491)
T ss_pred ----------------------------HHHHHHHhhheeeeCCCHHHHHHHHHHh--hccccCCCCccHHHHHHHhcCC
Confidence 5999999999999999999999999986 666666 889999999999999
Q ss_pred chhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchh--hhHHHHHhhhhhhhhh
Q 001076 864 TTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIM--YGLNILQGIQSESKSL 917 (1163)
Q Consensus 864 sgadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~--v~~~dF~~al~eikp~ 917 (1163)
+|+||.-+|++|..++++|+..-....+...+..+.+. +...||+.|+..+.+.
T Consensus 417 SGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pS 472 (491)
T KOG0738|consen 417 SGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPS 472 (491)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcC
Confidence 99999999999999999988654433444556666666 7888999998877653
No 49
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.6e-18 Score=195.01 Aligned_cols=205 Identities=25% Similarity=0.431 Sum_probs=160.8
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccc
Q 001076 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG 1026 (1163)
Q Consensus 947 tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~G 1026 (1163)
.|++++-.......|.++... ..+. + .-..|.++||||||||||||++|+.||...|..|-.+...++.. .-.
T Consensus 353 pl~~ViL~psLe~Rie~lA~a-TaNT----K-~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~ 425 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIA-TANT----K-KHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGA 425 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHH-hccc----c-cccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cch
Confidence 467777777777776665432 1110 1 11346678999999999999999999999999998888777532 222
Q ss_pred chHHHHHHHHHHHhccCCe-EEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHH
Q 001076 1027 EGEKYVKAVFSLASKIAPS-VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEA 1105 (1163)
Q Consensus 1027 e~E~~Ir~lF~~A~k~~Ps-ILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~a 1105 (1163)
..-..|.++|..|++...+ +|||||.|.++..|......++.+..+|.||..--. ....|+++.+||+|..||.+
T Consensus 426 qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd----qSrdivLvlAtNrpgdlDsA 501 (630)
T KOG0742|consen 426 QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD----QSRDIVLVLATNRPGDLDSA 501 (630)
T ss_pred HHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc----cccceEEEeccCCccchhHH
Confidence 3445789999999998765 789999999998888777788889999999865322 23678999999999999999
Q ss_pred HHhccCcEEEecCCCHHHHHHHHHHHHhhCCC---------------------------CChhhHHHHHHHcCCCCHHHH
Q 001076 1106 VVRRLPRRLMVNLPDAPNREKIIRVILAKEEL---------------------------ASDVDLEGIANMADGYSGSDL 1158 (1163)
Q Consensus 1106 LlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l---------------------------~~dvdl~~LA~~TeGySgaDL 1158 (1163)
+-.|||.+++|++|..++|.+++..|+.++-+ ..+..+.+.|..|+||||.+|
T Consensus 502 V~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREi 581 (630)
T KOG0742|consen 502 VNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREI 581 (630)
T ss_pred HHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHH
Confidence 99999999999999999999999999876321 122346788999999999999
Q ss_pred Hhhc
Q 001076 1159 KVDY 1162 (1163)
Q Consensus 1159 k~Lv 1162 (1163)
..|+
T Consensus 582 akLv 585 (630)
T KOG0742|consen 582 AKLV 585 (630)
T ss_pred HHHH
Confidence 8875
No 50
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.78 E-value=1.6e-18 Score=169.08 Aligned_cols=130 Identities=38% Similarity=0.644 Sum_probs=114.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHhccC-CeEEEEccccccccCCCCcchH
Q 001076 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEH 1065 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~-PsILfIDEID~L~g~r~s~~~~ 1065 (1163)
|||+||||+|||++|+.+|+.++++++.+++.++.+.+.+..++.+..+|..+.+.. |+||||||+|.+++.. .....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 799999999999999999999999999999999998899999999999999999988 9999999999998766 33344
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHH-hccCcEEEecC
Q 001076 1066 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVV-RRLPRRLMVNL 1118 (1163)
Q Consensus 1066 eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLl-rRFd~vI~I~~ 1118 (1163)
.....+.+.|+..++..... ..+++||+|||.++.+++.++ +||+.+|++++
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 55667788888888887543 367999999999999999999 99999988863
No 51
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3e-18 Score=192.84 Aligned_cols=233 Identities=21% Similarity=0.325 Sum_probs=188.5
Q ss_pred HhHHHHHhcccCCccccccccccccccchhHHHHHHHhhhhhhcccccccccCCCCCCCCceeecCCCCchHHHHHHHHH
Q 001076 434 AFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKA 513 (1163)
Q Consensus 434 ~~k~~l~~~i~~~~~~~vsf~~FPYylse~Tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgpagsE~Yqe~LaKA 513 (1163)
-|+.-+...||.+++|.|+|++ --==|.+|+.|-+..-.-|+++++.+++ .|...+.-|||.||+| .-..|||||
T Consensus 72 e~E~~i~s~~v~p~~I~v~f~D--IggLe~v~~~L~e~VilPlr~pelF~~g-~Ll~p~kGiLL~GPpG--~GKTmlAKA 146 (386)
T KOG0737|consen 72 EYEKRIASDVVPPSEIGVSFDD--IGGLEEVKDALQELVILPLRRPELFAKG-KLLRPPKGILLYGPPG--TGKTMLAKA 146 (386)
T ss_pred HHHHHhhhcccchhhceeehhh--ccchHHHHHHHHHHHhhcccchhhhccc-ccccCCccceecCCCC--chHHHHHHH
Confidence 3666778899999999999998 3445899999999999999999988854 5555889999999999 678999999
Q ss_pred HHhhcCCeEEEEeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccc
Q 001076 514 LAKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTAS 593 (1163)
Q Consensus 514 LA~~f~a~LLilDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (1163)
+|+.-||...=|+.
T Consensus 147 ~Akeaga~fInv~~------------------------------------------------------------------ 160 (386)
T KOG0737|consen 147 IAKEAGANFINVSV------------------------------------------------------------------ 160 (386)
T ss_pred HHHHcCCCcceeec------------------------------------------------------------------
Confidence 99987765211110
Q ss_pred cCCcccccCCceeeeccCCCCcccCCCCCCCCCcccCeeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccc
Q 001076 594 SKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTAS 673 (1163)
Q Consensus 594 ~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~p~~g~rg~v~~~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~ 673 (1163)
+
T Consensus 161 -------------------------------------------------------------------------------s 161 (386)
T KOG0737|consen 161 -------------------------------------------------------------------------------S 161 (386)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred cccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcC----ChhhHHHHHHHHhcC--------CCCEEEE
Q 001076 674 SLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG----NNDAYGALKSKLENL--------PSNVVVI 741 (1163)
Q Consensus 674 ~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~----~~~~~~~i~s~L~~L--------~g~VivI 741 (1163)
.+ .|+|-||++-.+..+|-++. |-+|.|||+||||..|.. +-++-+.+|..+-.+ ...|+|+
T Consensus 162 ~l---t~KWfgE~eKlv~AvFslAs---Kl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVl 235 (386)
T KOG0737|consen 162 NL---TSKWFGEAQKLVKAVFSLAS---KLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVL 235 (386)
T ss_pred cc---chhhHHHHHHHHHHHHhhhh---hcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEE
Confidence 01 35788999999999998887 599999999999998872 345555666666555 2269999
Q ss_pred EeccccccccccCCCCCceeeccCCchhhhccccCCCCccccccccccchHHHHHhhhccccceeecCCchhHHHHHHHH
Q 001076 742 GSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQ 821 (1163)
Q Consensus 742 gs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRfer 821 (1163)
||||| |-+++ +|.+||+.+
T Consensus 236 gATNR------------------------------P~DlD-------------------------------eAiiRR~p~ 254 (386)
T KOG0737|consen 236 GATNR------------------------------PFDLD-------------------------------EAIIRRLPR 254 (386)
T ss_pred eCCCC------------------------------CccHH-------------------------------HHHHHhCcc
Confidence 99994 43343 499999999
Q ss_pred HHHHhhhhhhccchhhHHHhhhhcCCC-CcccccchhhcccCCchhhhhhHHhHHhhhhhhhcCC
Q 001076 822 QLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSE 885 (1163)
Q Consensus 822 q~e~~LpdlkgR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al~r~~~ 885 (1163)
.|.+++|+.+.|..|+++- +....+ +++|+.++|.+|.||+|.||..+|+.|+.+.++....
T Consensus 255 rf~V~lP~~~qR~kILkvi--Lk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 255 RFHVGLPDAEQRRKILKVI--LKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred eeeeCCCchhhHHHHHHHH--hcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 9999999999999998874 777777 8999999999999999999999999999998875543
No 52
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.4e-18 Score=188.57 Aligned_cols=224 Identities=27% Similarity=0.356 Sum_probs=170.9
Q ss_pred cCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC------
Q 001076 936 ADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG------ 1009 (1163)
Q Consensus 936 ~~iip~~e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg------ 1009 (1163)
.+++|..+...-|+.++--...|+.+..++...+...+.-....+-.-.+-|||+||||||||+|++|+|+.+.
T Consensus 129 ~w~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~ 208 (423)
T KOG0744|consen 129 HWYLPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDR 208 (423)
T ss_pred heeccchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCc
Confidence 45667666666777888778899999999887666554433333333335589999999999999999999983
Q ss_pred ---CcEEEEeccccccccccchHHHHHHHHHHHhcc-----CCeEEEEccccccccCCC---CcchHHHHHHHHHHHHHH
Q 001076 1010 ---ANFINISMSSITSKWFGEGEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRRE---NPGEHEAMRKMKNEFMVN 1078 (1163)
Q Consensus 1010 ---~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~-----~PsILfIDEID~L~g~r~---s~~~~eal~~il~~LL~~ 1078 (1163)
..++.+++-.++++||+++-+.+.++|...... .-..++|||+|.|...|. +..+....-++.|.++.+
T Consensus 209 y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQ 288 (423)
T KOG0744|consen 209 YYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQ 288 (423)
T ss_pred cccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHH
Confidence 457899999999999999999999999876543 234677999999986552 122233344688999999
Q ss_pred hcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhC---CC----------C-----Ch
Q 001076 1079 WDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE---EL----------A-----SD 1140 (1163)
Q Consensus 1079 Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~---~l----------~-----~d 1140 (1163)
+|.+.. ..+|++++|+|..+.+|.+|..|-|.+.++.+|+...|.+|++..+.+. ++ . .+
T Consensus 289 lDrlK~--~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~ 366 (423)
T KOG0744|consen 289 LDRLKR--YPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQK 366 (423)
T ss_pred HHHhcc--CCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhH
Confidence 999854 4789999999999999999999999999999999999999999988762 11 0 11
Q ss_pred hhHHHHHHH-cCCCCHHHHHhh
Q 001076 1141 VDLEGIANM-ADGYSGSDLKVD 1161 (1163)
Q Consensus 1141 vdl~~LA~~-TeGySgaDLk~L 1161 (1163)
.....+... +.|.||.-|+.|
T Consensus 367 ~~~~~~~~~~~~gLSGRtlrkL 388 (423)
T KOG0744|consen 367 ALRNILIELSTVGLSGRTLRKL 388 (423)
T ss_pred hHHHHHHHHhhcCCccchHhhh
Confidence 112333333 479999888765
No 53
>CHL00181 cbbX CbbX; Provisional
Probab=99.73 E-value=5.9e-17 Score=182.05 Aligned_cols=202 Identities=16% Similarity=0.261 Sum_probs=146.8
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCC--CceEEEEcCCCChHHHHHHHHHHHh---C----CcEEEEecccc
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKP--CKGILLFGPPGTGKTMLAKAVATEA---G----ANFINISMSSI 1020 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p--~kgVLL~GPPGTGKT~LArALA~eL---g----~pfi~Id~seL 1020 (1163)
+++|++.+|+++.+++.+ +..+..+.+.++..+ ..++||+||||||||++|+++|+.+ | .+|+.++..++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 24 ELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred hcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 688999999999998866 333455554554433 3459999999999999999999876 2 36899999999
Q ss_pred ccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCC-
Q 001076 1021 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP- 1099 (1163)
Q Consensus 1021 ~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p- 1099 (1163)
.+.++|..+..+..+|..|. ++||||||++.|...+.. ......+.+.|+..|+.. ..+++||++++..
T Consensus 103 ~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~---~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~~ 172 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE---RDYGSEAIEILLQVMENQ----RDDLVVIFAGYKDR 172 (287)
T ss_pred HHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 99999988877788887764 489999999998643221 123345667777777542 2567888887542
Q ss_pred ----CCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHH----c--CCCC-HHHHHhhc
Q 001076 1100 ----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANM----A--DGYS-GSDLKVDY 1162 (1163)
Q Consensus 1100 ----~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~----T--eGyS-gaDLk~Lv 1162 (1163)
..++|+|++||+.+|.|+.++.+++.+|++.++.+.... .+.....+... . ..|. +.++++++
T Consensus 173 ~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~v 247 (287)
T CHL00181 173 MDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNAL 247 (287)
T ss_pred HHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 245699999999999999999999999999999875432 22223333322 2 3455 67877764
No 54
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.9e-17 Score=198.63 Aligned_cols=160 Identities=23% Similarity=0.241 Sum_probs=130.7
Q ss_pred CCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcCCh---hhH-HHHHHHHhcC------CCCEEEEEeccccc
Q 001076 679 SSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGNN---DAY-GALKSKLENL------PSNVVVIGSHTQLD 748 (1163)
Q Consensus 679 ~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~~~---~~~-~~i~s~L~~L------~g~VivIgs~~~~d 748 (1163)
+|+|+|+.+..++.+|+.+.. ..|+||||||+|.|+.++. +.. .+++.+|+.. ..+|+||++||+++
T Consensus 313 ~sk~vGesek~ir~~F~~A~~---~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~ 389 (494)
T COG0464 313 LSKWVGESEKNIRELFEKARK---LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPD 389 (494)
T ss_pred hccccchHHHHHHHHHHHHHc---CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCcc
Confidence 567999999999999998885 9999999999999777432 111 2555555544 33899999999665
Q ss_pred cccccCCCCCceeeccCCchhhhccccCCCCccccccccccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHh
Q 001076 749 SRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERD 826 (1163)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~ 826 (1163)
. ||| |++| ||++.++++
T Consensus 390 ~----------------------ld~---------------------------------------a~lR~gRfd~~i~v~ 408 (494)
T COG0464 390 D----------------------LDP---------------------------------------ALLRPGRFDRLIYVP 408 (494)
T ss_pred c----------------------cCH---------------------------------------hhcccCccceEeecC
Confidence 5 433 8899 999999999
Q ss_pred hhhhhccchhhHHHhhhhcCCC-CcccccchhhcccCCchhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHH
Q 001076 827 VETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLN 905 (1163)
Q Consensus 827 LpdlkgR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~ 905 (1163)
+||...|.+|+++|+......+ .++++.+++..+.+|+|+||..+|.+|+..++.+.. ...+...
T Consensus 409 ~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~--------------~~~~~~~ 474 (494)
T COG0464 409 LPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR--------------RREVTLD 474 (494)
T ss_pred CCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc--------------cCCccHH
Confidence 9999999999999998555554 899999999999999999999999999999997653 3456778
Q ss_pred HHHhhhhhhhh
Q 001076 906 ILQGIQSESKS 916 (1163)
Q Consensus 906 dF~~al~eikp 916 (1163)
+|..++.+++|
T Consensus 475 ~~~~a~~~~~p 485 (494)
T COG0464 475 DFLDALKKIKP 485 (494)
T ss_pred HHHHHHHhcCC
Confidence 88888766554
No 55
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.71 E-value=1.3e-16 Score=176.52 Aligned_cols=189 Identities=16% Similarity=0.244 Sum_probs=138.9
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecc
Q 001076 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMS 1018 (1163)
Q Consensus 948 fddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~--p~kgVLL~GPPGTGKT~LArALA~eL-------g~pfi~Id~s 1018 (1163)
+++++|++++|+.+.+++.++..+.... +.+... ...++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~-~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRK-EEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHH-HcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 5688999999999999887654432222 222222 23569999999999999999999875 2478899999
Q ss_pred ccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCC
Q 001076 1019 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1098 (1163)
Q Consensus 1019 eL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~ 1098 (1163)
++.+.++|+.+..++.+|..|. ++||||||+|.|..... .......++.++..++.. ..++++|+++..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~----~~~~~~~i~~Ll~~~e~~----~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE----KDFGKEAIDTLVKGMEDN----RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc----cchHHHHHHHHHHHHhcc----CCCEEEEecCCc
Confidence 9999999999988999998774 47999999999852111 122244566677776553 245666666543
Q ss_pred C-----CCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHH
Q 001076 1099 P-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIAN 1148 (1163)
Q Consensus 1099 p-----~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~ 1148 (1163)
. ..+++++.+||+..|.|+.++.+++.+|++.++...... ++..+..|+.
T Consensus 153 ~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~ 208 (261)
T TIGR02881 153 DEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLRE 208 (261)
T ss_pred chhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHH
Confidence 2 247789999999899999999999999999999876542 3334555544
No 56
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.70 E-value=2.4e-16 Score=176.91 Aligned_cols=188 Identities=18% Similarity=0.269 Sum_probs=141.3
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHh---C----CcEEEEecccc
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEA---G----ANFINISMSSI 1020 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~--p~kgVLL~GPPGTGKT~LArALA~eL---g----~pfi~Id~seL 1020 (1163)
+++|++++|+++.+++.+ +..++.+.+.++.. |..++||+||||||||++|+++|+.+ + .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 588999999999998876 44455555555433 44589999999999999999998877 2 37999999999
Q ss_pred ccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCC-
Q 001076 1021 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP- 1099 (1163)
Q Consensus 1021 ~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p- 1099 (1163)
.+.++|..+..++.+|..|. ++|||||||+.|...+.. ......+.+.|+..|+.. ..+++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~---~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMENQ----RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 88899988888888888774 489999999988643321 123345566677777542 2568888887542
Q ss_pred -C---CCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHH
Q 001076 1100 -F---DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIAN 1148 (1163)
Q Consensus 1100 -~---~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~ 1148 (1163)
+ .++++|.+||+..|.|+.++.+++..|++.++.+.... ++..+..++.
T Consensus 172 ~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~ 225 (284)
T TIGR02880 172 MDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFAD 225 (284)
T ss_pred HHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHH
Confidence 2 35899999999999999999999999999999885432 2333444444
No 57
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.5e-16 Score=197.29 Aligned_cols=405 Identities=19% Similarity=0.207 Sum_probs=252.4
Q ss_pred HHHHHHHHHHHHhhccCCCeEE--------------------------------EEcchhhhhcC---ChhhHHHHHHHH
Q 001076 687 KLAINELFEVALNESKSSPLIV--------------------------------FVKDIEKSLTG---NNDAYGALKSKL 731 (1163)
Q Consensus 687 ~~~l~~l~evl~~e~k~~P~II--------------------------------ffddid~~La~---~~~~~~~i~s~L 731 (1163)
...+++.+++|.+..|+||+|| ++-+++.+++| +++|..+|+..+
T Consensus 193 deeirRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~ 272 (898)
T KOG1051|consen 193 DEEIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELL 272 (898)
T ss_pred hHHHHHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHH
Confidence 3468999999999999999999 66678886664 799999999999
Q ss_pred hcC---CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCccccccccccchHHHHHhhhccccceeec
Q 001076 732 ENL---PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQ 808 (1163)
Q Consensus 732 ~~L---~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~ 808 (1163)
... .|+||++....|.-.+.+++ .|+| ++.|+|+|+ +.++...| ||.++...|+-.
T Consensus 273 k~v~~~~~gvILfigelh~lvg~g~~-~~~~-------d~~nlLkp~----L~rg~l~~---------IGatT~e~Y~k~ 331 (898)
T KOG1051|consen 273 KEVESGGGGVILFLGELHWLVGSGSN-YGAI-------DAANLLKPL----LARGGLWC---------IGATTLETYRKC 331 (898)
T ss_pred HHHhcCCCcEEEEecceeeeecCCCc-chHH-------HHHHhhHHH----HhcCCeEE---------EecccHHHHHHH
Confidence 864 57999999999998877776 3344 889999996 88888889 999999999999
Q ss_pred CCchhHHHHHHHHHHH-Hh-----hhhhhc-cchhhHHHhh-hhcCCC-CcccccchhhcccCCchhhhhhHHhHHhhh-
Q 001076 809 LPQDEALLSDWKQQLE-RD-----VETLKG-QSNIISIRSV-LSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSH- 878 (1163)
Q Consensus 809 ~P~DeALlRRferq~e-~~-----Lpdlkg-R~~Il~IHT~-l~~~~L-~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~- 878 (1163)
..+|+|+-|||+-++- ++ ..++.| +..+.-.|.+ .....+ ....++..++....++...|+ ++.+|...
T Consensus 332 iekdPalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aid-l~dEa~a~~ 410 (898)
T KOG1051|consen 332 IEKDPALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAID-LEDEAAALV 410 (898)
T ss_pred HhhCcchhhCcceeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhccc-HHHHHHHHH
Confidence 9999999999985331 11 112333 2334445554 444444 666777777766666655555 45554443
Q ss_pred hhhhc-CCCCCC-----CCcccccccchhhhHH--------------------HHHhhhhhhhhhhhhhh---cccchhH
Q 001076 879 HFMHC-SEAPGK-----DAKLKISTESIMYGLN--------------------ILQGIQSESKSLKKSLK---DVVTENE 929 (1163)
Q Consensus 879 Al~r~-~~qi~~-----~~kl~Id~~sI~v~~~--------------------dF~~al~eikp~~~slk---~lv~~~e 929 (1163)
..++. .|+.-. ..++.+....++.-++ .+.......+.....+. .-.....
T Consensus 411 ~~~~~~lP~wL~~~~~~~~~~~~e~~~L~kk~d~~~h~r~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~~~~~~~~~~~ 490 (898)
T KOG1051|consen 411 KSQAESLPPWLQNLERVDIKLQDEISELQKKWNQALHKRPSLESLAPSKPTQQPLSASVDSERSVIEELKLKKNSLDRNS 490 (898)
T ss_pred hhhhhhCCHHHHhhhhhhhhhHHHHHHHHHhhhhhhccccccccccccccccccchhhhccchhHHhhhccccCCcccch
Confidence 33221 111100 1111111111111111 00000000000000000 0000000
Q ss_pred ----------HH---------------H----------HHhcCCCCCCCCCC---------Cc--------ccccCcHHH
Q 001076 930 ----------FE---------------K----------KLLADVIPPSDIGV---------TF--------DDIGALENV 957 (1163)
Q Consensus 930 ----------~e---------------k----------~ll~~iip~~e~~~---------tf--------ddI~Gleev 957 (1163)
+. . .+..-+..+..+.+ .| ..|+||+++
T Consensus 491 ~~~k~~r~~d~~~~~~l~~~~~p~~~~~~~~~~~~~~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eA 570 (898)
T KOG1051|consen 491 LLAKAHRPNDYTRETDLRYGRIPDELSEKSNDNQGGESDISEVVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEA 570 (898)
T ss_pred hhhcccCCCCcchhhhccccccchhhhhhcccccCCccchhhhhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHH
Confidence 00 0 00000001111111 01 358899999
Q ss_pred HHHHHHHHHcccCChhhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc--ccccchH-
Q 001076 958 KDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS--KWFGEGE- 1029 (1163)
Q Consensus 958 k~~L~e~V~lpl~~pelf~k~~l~~--p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s--~~~Ge~E- 1029 (1163)
...+.+.|... +.++.+ |...+||.||.|+|||.||+++|..+ .-.|+.+||++++. +..|.+.
T Consensus 571 v~aIa~AI~~s--------r~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~g 642 (898)
T KOG1051|consen 571 VAAIAAAIRRS--------RAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPG 642 (898)
T ss_pred HHHHHHHHHhh--------hcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcc
Confidence 99999988752 233344 56679999999999999999999998 46799999997432 2222222
Q ss_pred ----HHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccC-------CCCEEEEEEeCC
Q 001076 1030 ----KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD-------KERVLVLAATNR 1098 (1163)
Q Consensus 1030 ----~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~-------~~~VlVIaTTN~ 1098 (1163)
....++....++.+.+||+||||| .++..+++.|++.+|....++ -.+++||+|+|.
T Consensus 643 yvG~e~gg~LteavrrrP~sVVLfdeIE------------kAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 643 YVGKEEGGQLTEAVKRRPYSVVLFEEIE------------KAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred cccchhHHHHHHHHhcCCceEEEEechh------------hcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEeccc
Confidence 234567777888888999999998 455678888888887665443 258999999764
Q ss_pred ------------------------------------C----CCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHh
Q 001076 1099 ------------------------------------P----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA 1133 (1163)
Q Consensus 1099 ------------------------------------p----~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~ 1133 (1163)
. ..+.++|++|.+..+.+...+.++-.+|....+.
T Consensus 711 ~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~~~ 785 (898)
T KOG1051|consen 711 GSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQLT 785 (898)
T ss_pred chHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeecccchhhHhhhhhhHHH
Confidence 1 2334566667777777888887766666655543
No 58
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.1e-16 Score=189.64 Aligned_cols=202 Identities=23% Similarity=0.303 Sum_probs=155.4
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccccccc
Q 001076 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKW 1024 (1163)
Q Consensus 949 ddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL----g~pfi~Id~seL~s~~ 1024 (1163)
.+++-...++++..+....|. .+ ..+|||+||+|+|||.|++++++++ -+++..++|+.+....
T Consensus 408 ~d~i~~~s~kke~~n~~~spv-----------~~-~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~ 475 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSPV-----------FR-HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS 475 (952)
T ss_pred Cceeecchhhhhhhhhhcccc-----------cc-cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchh
Confidence 355566666666655443331 12 2479999999999999999999998 4678889999999888
Q ss_pred ccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcc-hHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCC
Q 001076 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG-EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1103 (1163)
Q Consensus 1025 ~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~-~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld 1103 (1163)
+....+.+..+|..|.+++|+||+||++|.|++...... ........+..|++.+-....+.+..+.||||.+....|+
T Consensus 476 ~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~ 555 (952)
T KOG0735|consen 476 LEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN 555 (952)
T ss_pred HHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC
Confidence 888888999999999999999999999999997433322 2223333444455333333344567789999999999999
Q ss_pred HHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1104 EAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1104 ~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
+.+.+ +|+.++.++.|+..+|.+|++.++++.... ...|++-++..|+||...||..++
T Consensus 556 ~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 556 PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred hhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHH
Confidence 99887 899999999999999999999999885522 223444499999999999998765
No 59
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=3.2e-17 Score=189.37 Aligned_cols=167 Identities=22% Similarity=0.380 Sum_probs=135.0
Q ss_pred eeeecCCCCCCCCCCCCCCCCCC---cccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcC--
Q 001076 645 GVRFDRSIPEGNNLGGFCEDDHG---FFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG-- 719 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~~~c~~~~~---ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~-- 719 (1163)
||..-+|+++|+||-+-.--|+. ||+..|.- || -.+||..-+-+|.||+.+.. .-|.||||||||. +.+
T Consensus 339 GVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSE-Fd-Em~VGvGArRVRdLF~aAk~---~APcIIFIDEiDa-vG~kR 412 (752)
T KOG0734|consen 339 GVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSE-FD-EMFVGVGARRVRDLFAAAKA---RAPCIIFIDEIDA-VGGKR 412 (752)
T ss_pred ceEEeCCCCCchhHHHHHhhcccCCCeEeccccc-hh-hhhhcccHHHHHHHHHHHHh---cCCeEEEEechhh-hcccC
Confidence 78888899999999744444443 77666643 33 56788888999999988766 8899999999999 662
Q ss_pred -ChhhHHHHHHHHhcC----CC-----CEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCcccccccccc
Q 001076 720 -NNDAYGALKSKLENL----PS-----NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKE 789 (1163)
Q Consensus 720 -~~~~~~~i~s~L~~L----~g-----~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~ 789 (1163)
+.+.| .-+.||..| .| .|||||||| +||++|+
T Consensus 413 ~~~~~~-y~kqTlNQLLvEmDGF~qNeGiIvigATN------------------------------fpe~LD~------- 454 (752)
T KOG0734|consen 413 NPSDQH-YAKQTLNQLLVEMDGFKQNEGIIVIGATN------------------------------FPEALDK------- 454 (752)
T ss_pred CccHHH-HHHHHHHHHHHHhcCcCcCCceEEEeccC------------------------------ChhhhhH-------
Confidence 33443 344555544 55 899999999 5555664
Q ss_pred chHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhhhhcCCC-CcccccchhhcccCCchh
Q 001076 790 TPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTE 866 (1163)
Q Consensus 790 ~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~sga 866 (1163)
||.| |||+|+-.++||..||.+||+.| |..-.+ .++|+.-+|.-|.||+||
T Consensus 455 ------------------------AL~RPGRFD~~v~Vp~PDv~GR~eIL~~y--l~ki~~~~~VD~~iiARGT~GFsGA 508 (752)
T KOG0734|consen 455 ------------------------ALTRPGRFDRHVTVPLPDVRGRTEILKLY--LSKIPLDEDVDPKIIARGTPGFSGA 508 (752)
T ss_pred ------------------------HhcCCCccceeEecCCCCcccHHHHHHHH--HhcCCcccCCCHhHhccCCCCCchH
Confidence 9999 99999999999999999999999 555556 699999999999999999
Q ss_pred hhhhHHhHHhhhhhh
Q 001076 867 GVEKIVGWALSHHFM 881 (1163)
Q Consensus 867 dIe~Lv~~Aas~Al~ 881 (1163)
||+.||..|+.+|-.
T Consensus 509 dLaNlVNqAAlkAa~ 523 (752)
T KOG0734|consen 509 DLANLVNQAALKAAV 523 (752)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999875
No 60
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.9e-17 Score=177.88 Aligned_cols=186 Identities=19% Similarity=0.241 Sum_probs=144.1
Q ss_pred eeeecCCCCCCCCCCC--CCCCC-CCcccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhc-C-
Q 001076 645 GVRFDRSIPEGNNLGG--FCEDD-HGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT-G- 719 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~~--~c~~~-~~ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La-~- 719 (1163)
||+.-+++++|++|-+ -..+. ..|.--+|..- ..++.|+.-+++++||+++-+ +.|+|||+||||. +. +
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseL--iQkylGdGpklvRqlF~vA~e---~apSIvFiDEIdA-iGtKR 294 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFLRVVGSEL--IQKYLGDGPKLVRELFRVAEE---HAPSIVFIDEIDA-IGTKR 294 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHH--HHHHhccchHHHHHHHHHHHh---cCCceEEeehhhh-hcccc
Confidence 6777778999999971 11222 22443345433 467889999999999999988 9999999999999 55 2
Q ss_pred -------ChhhHHHHHHHHhcC-----CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCcccccccc
Q 001076 720 -------NNDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRS 787 (1163)
Q Consensus 720 -------~~~~~~~i~s~L~~L-----~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~ 787 (1163)
..++-..+...|..| ||-|-||.|||+.+. |||
T Consensus 295 yds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~----------------------LDP------------- 339 (440)
T KOG0726|consen 295 YDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET----------------------LDP------------- 339 (440)
T ss_pred ccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccc----------------------cCH-------------
Confidence 223333333333344 779999999998776 666
Q ss_pred ccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhh-hhcCCCCcccccchhhcccCCc
Q 001076 788 KETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLT 864 (1163)
Q Consensus 788 ~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~-l~~~~L~~vdLeeLa~~tkg~s 864 (1163)
||.| |.+|.++|++||++.|+.|++|||- |+-. .+++|++|-....-++
T Consensus 340 --------------------------aLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~--~dVnle~li~~kddlS 391 (440)
T KOG0726|consen 340 --------------------------ALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLA--EDVNLEELIMTKDDLS 391 (440)
T ss_pred --------------------------hhcCCCccccccccCCCchhhhceeEEEeecccchh--ccccHHHHhhcccccc
Confidence 8888 9999999999999999999999996 6532 7899999999889999
Q ss_pred hhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhhhhhh
Q 001076 865 TEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSES 914 (1163)
Q Consensus 865 gadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~dF~~al~ei 914 (1163)
||||+++|++|...|++.+. +.++..||..+...+
T Consensus 392 GAdIkAictEaGllAlRerR---------------m~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 392 GADIKAICTEAGLLALRERR---------------MKVTMEDFKKAKEKV 426 (440)
T ss_pred cccHHHHHHHHhHHHHHHHH---------------hhccHHHHHHHHHHH
Confidence 99999999999999997543 456778888775443
No 61
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=9.8e-16 Score=176.73 Aligned_cols=206 Identities=17% Similarity=0.293 Sum_probs=161.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~ 1024 (1163)
..+|+.++-..+.++.|.+-+..++...+-|.+.|.... +|.|||||||||||+++.|+|+++++.++.++.++....
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawK-RGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n- 274 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWK-RGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD- 274 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchh-ccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc-
Confidence 478999999999999999999999999999988775444 789999999999999999999999999999998775432
Q ss_pred ccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcc-----hH-HHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCC
Q 001076 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG-----EH-EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1098 (1163)
Q Consensus 1025 ~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~-----~~-eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~ 1098 (1163)
.+ ++.+...+ ...+||+|.+||.=+.-+.... .+ ...+-.+.-||+.+||+......--+||+|||.
T Consensus 275 ---~d--Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh 347 (457)
T KOG0743|consen 275 ---SD--LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNH 347 (457)
T ss_pred ---HH--HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCC
Confidence 22 66665433 2458999999998764222111 11 012345778999999999877677899999999
Q ss_pred CCCCCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCC--CCHHHHHhh
Q 001076 1099 PFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADG--YSGSDLKVD 1161 (1163)
Q Consensus 1099 p~~Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeG--ySgaDLk~L 1161 (1163)
.+.|||||+| |.|..|++..-+.++-..+++.++.-.. +..-+.+|.+.-+| .|++|+...
T Consensus 348 ~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 348 KEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred hhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHH
Confidence 9999999999 9999999999999999999999986643 22334555555554 588888754
No 62
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.65 E-value=6e-16 Score=166.41 Aligned_cols=192 Identities=22% Similarity=0.301 Sum_probs=120.6
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1025 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~ 1025 (1163)
.+|+|++||++++..+.-++.....+ ..+..++|||||||+|||+||..||++++.+|..++.+.+..
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r---------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--- 88 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKR---------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--- 88 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCT---------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S---
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhc---------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh---
Confidence 57899999999999988776543221 224468999999999999999999999999999888755321
Q ss_pred cchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHH-HhcCCccc------CCCCEEEEEEeCC
Q 001076 1026 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV-NWDGLRTK------DKERVLVLAATNR 1098 (1163)
Q Consensus 1026 Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~-~Ldgl~~k------~~~~VlVIaTTN~ 1098 (1163)
..-+..++.... ...||||||||+| +...++.+...++.+.. .+-|.... +-.++-+|++|++
T Consensus 89 ---~~dl~~il~~l~--~~~ILFIDEIHRl-----nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr 158 (233)
T PF05496_consen 89 ---AGDLAAILTNLK--EGDILFIDEIHRL-----NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTR 158 (233)
T ss_dssp ---CHHHHHHHHT----TT-EEEECTCCC-------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESS
T ss_pred ---HHHHHHHHHhcC--CCcEEEEechhhc-----cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecc
Confidence 122333443332 4579999999988 33333333333222211 11111110 1247899999999
Q ss_pred CCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCHHHHH
Q 001076 1099 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLK 1159 (1163)
Q Consensus 1099 p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySgaDLk 1159 (1163)
...|...++.||..+..+...+.++-.+|++.-....++. ++....+||+.+.|-..-..+
T Consensus 159 ~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnr 220 (233)
T PF05496_consen 159 AGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANR 220 (233)
T ss_dssp GCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHH
T ss_pred ccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHH
Confidence 9999999999999888999999999999999877666654 555678899999886554433
No 63
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=5.9e-15 Score=176.86 Aligned_cols=176 Identities=26% Similarity=0.398 Sum_probs=151.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcch
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1064 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~ 1064 (1163)
..+||+|+||+|||++++++|.++|.+++.++|.++.....+..|..+..+|..|++.+|+||||-++|.+...... +.
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg-ge 510 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG-GE 510 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC-ch
Confidence 46999999999999999999999999999999999999999999999999999999999999999999988744333 22
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHH
Q 001076 1065 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLE 1144 (1163)
Q Consensus 1065 ~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~ 1144 (1163)
.-.+...++.++. .+-. .....+++||+|++..+.+++.+++-|.+.|.++.|+.++|.+||+.++....+..++.+.
T Consensus 511 d~rl~~~i~~~ls-~e~~-~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k 588 (953)
T KOG0736|consen 511 DARLLKVIRHLLS-NEDF-KFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLK 588 (953)
T ss_pred hHHHHHHHHHHHh-cccc-cCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHH
Confidence 2233344444444 1212 2234789999999999999999999888899999999999999999999999999999999
Q ss_pred HHHHHcCCCCHHHHHhhcC
Q 001076 1145 GIANMADGYSGSDLKVDYT 1163 (1163)
Q Consensus 1145 ~LA~~TeGySgaDLk~Lvt 1163 (1163)
.+|.+|.||+.+||..+++
T Consensus 589 ~~a~~t~gfs~~~L~~l~~ 607 (953)
T KOG0736|consen 589 QLARKTSGFSFGDLEALVA 607 (953)
T ss_pred HHHHhcCCCCHHHHHHHhc
Confidence 9999999999999998763
No 64
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=8.3e-17 Score=175.82 Aligned_cols=164 Identities=19% Similarity=0.250 Sum_probs=132.6
Q ss_pred CCCCCCCCCC---CCCCCCCCcccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcC-----Ch
Q 001076 650 RSIPEGNNLG---GFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG-----NN 721 (1163)
Q Consensus 650 ~~~~~~~~l~---~~c~~~~~ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~-----~~ 721 (1163)
+|+++|+..- -..+-+..||.--..+- .|+|-|+++.++..||+++-+ +.|+|||+||||. |++ -.
T Consensus 173 GPPGTGKSYLAKAVATEAnSTFFSvSSSDL--vSKWmGESEkLVknLFemARe---~kPSIIFiDEiDs-lcg~r~enEs 246 (439)
T KOG0739|consen 173 GPPGTGKSYLAKAVATEANSTFFSVSSSDL--VSKWMGESEKLVKNLFEMARE---NKPSIIFIDEIDS-LCGSRSENES 246 (439)
T ss_pred CCCCCcHHHHHHHHHhhcCCceEEeehHHH--HHHHhccHHHHHHHHHHHHHh---cCCcEEEeehhhh-hccCCCCCch
Confidence 4889988643 11122233775544443 599999999999999999988 9999999999996 773 34
Q ss_pred hhHHHHHHHHhcC-------CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCccccccccccchHHH
Q 001076 722 DAYGALKSKLENL-------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKAL 794 (1163)
Q Consensus 722 ~~~~~i~s~L~~L-------~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~~~~~ 794 (1163)
+...+||..|+-- ...|+|+|||| .|..++.
T Consensus 247 easRRIKTEfLVQMqGVG~d~~gvLVLgATN------------------------------iPw~LDs------------ 284 (439)
T KOG0739|consen 247 EASRRIKTEFLVQMQGVGNDNDGVLVLGATN------------------------------IPWVLDS------------ 284 (439)
T ss_pred HHHHHHHHHHHHhhhccccCCCceEEEecCC------------------------------CchhHHH------------
Confidence 5666888877643 33899999999 5555664
Q ss_pred HHhhhccccceeecCCchhHHHHHHHHHHHHhhhhhhccchhhHHHhhhhcCCCCcccccchhhcccCCchhhhhhHHhH
Q 001076 795 KQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGW 874 (1163)
Q Consensus 795 ~~l~~lf~~~i~i~~P~DeALlRRferq~e~~LpdlkgR~~Il~IHT~l~~~~L~~vdLeeLa~~tkg~sgadIe~Lv~~ 874 (1163)
|.||||++.+|++||...+|..+++||--.+.+.|...|+.+|+.+|.||+|+||..+|+.
T Consensus 285 -------------------AIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrD 345 (439)
T KOG0739|consen 285 -------------------AIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRD 345 (439)
T ss_pred -------------------HHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehh
Confidence 9999999999999999999999999997678888899999999999999999999998888
Q ss_pred Hhhhhh
Q 001076 875 ALSHHF 880 (1163)
Q Consensus 875 Aas~Al 880 (1163)
|.-.-+
T Consensus 346 almePv 351 (439)
T KOG0739|consen 346 ALMEPV 351 (439)
T ss_pred hhhhhH
Confidence 765443
No 65
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.63 E-value=3.5e-15 Score=186.98 Aligned_cols=186 Identities=25% Similarity=0.382 Sum_probs=144.9
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL----------g~pfi~I 1015 (1163)
..+++++|+++.++.+.+.+.. +...++||+||||||||++|+++|+.+ +..++.+
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~--------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR--------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 3567899999999887776632 122579999999999999999999987 7789999
Q ss_pred eccccc--cccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcch-HHHHHHHHHHHHHHhcCCcccCCCCEEE
Q 001076 1016 SMSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1163)
Q Consensus 1016 d~seL~--s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~-~eal~~il~~LL~~Ldgl~~k~~~~VlV 1092 (1163)
++..+. ..+.|+.++.++.+|..+.++.+.||||||||.|++.....+. ... .+.|...+ .+..+.+
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~----~~~L~~~l------~~g~i~~ 314 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDA----SNLLKPAL------SSGKLRC 314 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHH----HHHHHHHH------hCCCeEE
Confidence 998887 4788999999999999998888999999999999865432221 121 12222222 2367999
Q ss_pred EEEeCCC-----CCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhC----CC-CChhhHHHHHHHcCCCCHH
Q 001076 1093 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE----EL-ASDVDLEGIANMADGYSGS 1156 (1163)
Q Consensus 1093 IaTTN~p-----~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~----~l-~~dvdl~~LA~~TeGySga 1156 (1163)
|++||.. ...|+++.|||. .|.|+.|+.+++.+|++.+.... .+ ..+..+..++.++..|-+.
T Consensus 315 IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~ 387 (731)
T TIGR02639 315 IGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIND 387 (731)
T ss_pred EEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccccc
Confidence 9999863 468999999995 79999999999999999877652 22 3667788889988887653
No 66
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.63 E-value=8.4e-16 Score=183.52 Aligned_cols=157 Identities=15% Similarity=0.203 Sum_probs=119.2
Q ss_pred cchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcC-----ChhhHHHHHHHHhc----CCCCEEEEEeccccccccc
Q 001076 682 GDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG-----NNDAYGALKSKLEN----LPSNVVVIGSHTQLDSRKE 752 (1163)
Q Consensus 682 ~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~-----~~~~~~~i~s~L~~----L~g~VivIgs~~~~d~~~~ 752 (1163)
|+|+.+..++.+|+.+.. ++|.||||||||.++.+ ......++..+|+. ...+|+||+++|+++.
T Consensus 299 ~vGese~~l~~~f~~A~~---~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~--- 372 (489)
T CHL00195 299 IVGESESRMRQMIRIAEA---LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDL--- 372 (489)
T ss_pred ccChHHHHHHHHHHHHHh---cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhh---
Confidence 444556677888877655 89999999999997763 12233444444433 3568999999996554
Q ss_pred cCCCCCceeeccCCchhhhccccCCCCccccccccccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhh
Q 001076 753 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETL 830 (1163)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpdl 830 (1163)
||| |++| ||++.+++++|+.
T Consensus 373 -------------------Ld~---------------------------------------allR~GRFD~~i~v~lP~~ 394 (489)
T CHL00195 373 -------------------LPL---------------------------------------EILRKGRFDEIFFLDLPSL 394 (489)
T ss_pred -------------------CCH---------------------------------------HHhCCCcCCeEEEeCCcCH
Confidence 444 7877 9999999999999
Q ss_pred hccchhhHHHhhh-hcCCCCcccccchhhcccCCchhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHHHHHh
Q 001076 831 KGQSNIISIRSVL-SRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 909 (1163)
Q Consensus 831 kgR~~Il~IHT~l-~~~~L~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~dF~~ 909 (1163)
+.|..|+++|... ......+.+++.||..|.||+|+||+.+|.+|...|+.+.. .+...||..
T Consensus 395 ~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~----------------~lt~~dl~~ 458 (489)
T CHL00195 395 EEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR----------------EFTTDDILL 458 (489)
T ss_pred HHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC----------------CcCHHHHHH
Confidence 9999999999763 33334688999999999999999999999999988875321 245678888
Q ss_pred hhhhhhhhh
Q 001076 910 IQSESKSLK 918 (1163)
Q Consensus 910 al~eikp~~ 918 (1163)
+..+++|..
T Consensus 459 a~~~~~Pls 467 (489)
T CHL00195 459 ALKQFIPLA 467 (489)
T ss_pred HHHhcCCCc
Confidence 877777654
No 67
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.62 E-value=4.9e-15 Score=168.62 Aligned_cols=175 Identities=24% Similarity=0.459 Sum_probs=130.6
Q ss_pred CCCcccccCcHHHH---HHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001076 945 GVTFDDIGALENVK---DTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1163)
Q Consensus 945 ~~tfddI~Gleevk---~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~ 1021 (1163)
..++++++|++... ..|.+.+.. + ...+++||||||||||+||+.||+..+.+|..++.-.
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~----------~----~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-- 83 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEA----------G----HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-- 83 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhc----------C----CCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--
Confidence 35788999998876 345555531 2 2358999999999999999999999999999998533
Q ss_pred cccccchHHHHHHHHHHHhccC----CeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEe-
Q 001076 1022 SKWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT- 1096 (1163)
Q Consensus 1022 s~~~Ge~E~~Ir~lF~~A~k~~----PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTT- 1096 (1163)
..-+-++.+|+.|++.. ..|||||||+++ +...|. .|+-.+ ++..|++|++|
T Consensus 84 -----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----nK~QQD-------~lLp~v------E~G~iilIGATT 140 (436)
T COG2256 84 -----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----NKAQQD-------ALLPHV------ENGTIILIGATT 140 (436)
T ss_pred -----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----Chhhhh-------hhhhhh------cCCeEEEEeccC
Confidence 34567889999996543 479999999987 222222 233333 44678889877
Q ss_pred -CCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhh--CCCC------ChhhHHHHHHHcCCCCHHHHH
Q 001076 1097 -NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK--EELA------SDVDLEGIANMADGYSGSDLK 1159 (1163)
Q Consensus 1097 -N~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k--~~l~------~dvdl~~LA~~TeGySgaDLk 1159 (1163)
|+.+.|.+++++|. .++.+.+.+.++..++++..+.. .++. ++..++.|+..++|-...-|.
T Consensus 141 ENPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN 211 (436)
T COG2256 141 ENPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALN 211 (436)
T ss_pred CCCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHH
Confidence 77899999999999 79999999999999999994433 2222 455678888888886655444
No 68
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.57 E-value=1.1e-13 Score=174.76 Aligned_cols=165 Identities=21% Similarity=0.325 Sum_probs=124.3
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc--------
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-------- 1021 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~-------- 1021 (1163)
+++|++++++.+.+++.....+ .. .....+||+||||||||++|++||+.++.+|+.+++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~------~~--~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR------GK--MKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh------cC--CCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 5789999999999987643321 11 1224799999999999999999999999999999875432
Q ss_pred -cccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcC-----Cc------ccCCCC
Q 001076 1022 -SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG-----LR------TKDKER 1089 (1163)
Q Consensus 1022 -s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldg-----l~------~k~~~~ 1089 (1163)
..|.|...+.+.+.|..+....| ||||||||.+...... .. .+.|+..++. +. .-+..+
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~-~~-------~~aLl~~ld~~~~~~f~d~~~~~~~d~s~ 463 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG-DP-------ASALLEVLDPEQNNAFSDHYLDVPFDLSK 463 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC-CH-------HHHHHHhcCHHhcCccccccCCceeccCC
Confidence 24677777888888888876665 8999999999642211 11 1233333331 10 012257
Q ss_pred EEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHH
Q 001076 1090 VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL 1132 (1163)
Q Consensus 1090 VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll 1132 (1163)
+++|+|||..+.++++|++|| .+|.|+.|+.+++.+|++.++
T Consensus 464 v~~I~TtN~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 464 VIFIATANSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEEEecCCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHH
Confidence 999999999999999999999 589999999999999998876
No 69
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.57 E-value=5.2e-14 Score=158.44 Aligned_cols=187 Identities=21% Similarity=0.265 Sum_probs=130.5
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccc
Q 001076 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG 1026 (1163)
Q Consensus 947 tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~G 1026 (1163)
+|++++|+++.++.|..++.....+ ..++.+++|+||||+|||+||+++|++++.++..+..+.+.. .
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~---------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~--~- 69 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR---------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--P- 69 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--c-
Confidence 6889999999999998887532211 223467999999999999999999999998887766543221 1
Q ss_pred chHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHh--cCC-cc----cCCCCEEEEEEeCCC
Q 001076 1027 EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGL-RT----KDKERVLVLAATNRP 1099 (1163)
Q Consensus 1027 e~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~L--dgl-~~----k~~~~VlVIaTTN~p 1099 (1163)
..+...+... ..+.|||||||+.+. ....+.+..+++.....+ +.. .. ....++.+|++||.+
T Consensus 70 ---~~l~~~l~~~--~~~~vl~iDEi~~l~-----~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~ 139 (305)
T TIGR00635 70 ---GDLAAILTNL--EEGDVLFIDEIHRLS-----PAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA 139 (305)
T ss_pred ---hhHHHHHHhc--ccCCEEEEehHhhhC-----HHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc
Confidence 1222222222 246899999999883 122233333333222110 100 00 012358899999999
Q ss_pred CCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCH
Q 001076 1100 FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1163)
Q Consensus 1100 ~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySg 1155 (1163)
..+++.+++||..++.+..|+.+++.++++..+....+. ++..++.|++.+.|+-.
T Consensus 140 ~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR 196 (305)
T TIGR00635 140 GMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPR 196 (305)
T ss_pred cccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcc
Confidence 999999999998889999999999999999988765543 55668899999999764
No 70
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.7e-15 Score=163.41 Aligned_cols=187 Identities=18% Similarity=0.194 Sum_probs=137.0
Q ss_pred eeeecCCCCCCCCCCCCC--CCCCCccccc-ccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcC-C
Q 001076 645 GVRFDRSIPEGNNLGGFC--EDDHGFFCTA-SSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG-N 720 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~~~c--~~~~~ff~~~-~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~-~ 720 (1163)
||..-+|+++|++|-+.. .-.+.-|-++ |.-- ..+++|+.-|.++.||+++-. ..-.||||||||. +.| +
T Consensus 213 gvllygppgtgktl~aravanrtdacfirvigsel--vqkyvgegarmvrelf~mart---kkaciiffdeida-iggar 286 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL--VQKYVGEGARMVRELFEMART---KKACIIFFDEIDA-IGGAR 286 (435)
T ss_pred ceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH--HHHHhhhhHHHHHHHHHHhcc---cceEEEEeecccc-ccCcc
Confidence 566667999999997211 1111124344 3221 368999999999999999877 7888999999999 652 0
Q ss_pred ----hhhHHHHHHHHhcC---------CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCcccccccc
Q 001076 721 ----NDAYGALKSKLENL---------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRS 787 (1163)
Q Consensus 721 ----~~~~~~i~s~L~~L---------~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~ 787 (1163)
-.--+-++.|++.| ||++-|+-+||++|. |||
T Consensus 287 fddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdt----------------------ldp------------- 331 (435)
T KOG0729|consen 287 FDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDT----------------------LDP------------- 331 (435)
T ss_pred ccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCC----------------------cCH-------------
Confidence 01112344444444 889999999996665 444
Q ss_pred ccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhh-hhcCCCCcccccchhhcccCCc
Q 001076 788 KETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLT 864 (1163)
Q Consensus 788 ~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~-l~~~~L~~vdLeeLa~~tkg~s 864 (1163)
||+| |.+|.+||.|||++||.+|++||++ |.-. -+.-.+-||.+|.+-+
T Consensus 332 --------------------------allrpgrldrkvef~lpdlegrt~i~kihaksmsve--rdir~ellarlcpnst 383 (435)
T KOG0729|consen 332 --------------------------ALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVE--RDIRFELLARLCPNST 383 (435)
T ss_pred --------------------------hhcCCcccccceeccCCcccccceeEEEeccccccc--cchhHHHHHhhCCCCc
Confidence 8999 9999999999999999999999988 5432 3456677999999999
Q ss_pred hhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhhhhhhh
Q 001076 865 TEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESK 915 (1163)
Q Consensus 865 gadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~dF~~al~eik 915 (1163)
||+|+.+|++|.-+|++-+.. ..+-+||..+.+++.
T Consensus 384 gaeirsvcteagmfairarrk---------------~atekdfl~av~kvv 419 (435)
T KOG0729|consen 384 GAEIRSVCTEAGMFAIRARRK---------------VATEKDFLDAVNKVV 419 (435)
T ss_pred chHHHHHHHHhhHHHHHHHhh---------------hhhHHHHHHHHHHHH
Confidence 999999999999999974431 124567776665553
No 71
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.56 E-value=9.6e-14 Score=158.69 Aligned_cols=188 Identities=22% Similarity=0.283 Sum_probs=133.6
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1025 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~ 1025 (1163)
.+|++++|+++.++.+..++..... . ..++.++||+||||+|||+||+++|++++..+..++.+.+.
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~-------~--~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~---- 88 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK-------R--GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE---- 88 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh-------c--CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc----
Confidence 4789999999999999887753211 1 23457899999999999999999999999988777655332
Q ss_pred cchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHH--hcCCcc-c----CCCCEEEEEEeCC
Q 001076 1026 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN--WDGLRT-K----DKERVLVLAATNR 1098 (1163)
Q Consensus 1026 Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~--Ldgl~~-k----~~~~VlVIaTTN~ 1098 (1163)
....+..++... ..+.||||||||.+. ....+.+..+++.+... ++.... . .-.++.+|++||+
T Consensus 89 --~~~~l~~~l~~l--~~~~vl~IDEi~~l~-----~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~ 159 (328)
T PRK00080 89 --KPGDLAAILTNL--EEGDVLFIDEIHRLS-----PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR 159 (328)
T ss_pred --ChHHHHHHHHhc--ccCCEEEEecHhhcc-----hHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCC
Confidence 122344444433 346899999999883 12223333332222110 111000 0 1134788999999
Q ss_pred CCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCH
Q 001076 1099 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1163)
Q Consensus 1099 p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySg 1155 (1163)
+..+++.+++||..++.++.|+.+++.+|++......++. ++..+..|+..+.|+-.
T Consensus 160 ~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR 217 (328)
T PRK00080 160 AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPR 217 (328)
T ss_pred cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCch
Confidence 9999999999999899999999999999999998876554 55568999999998764
No 72
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.5e-15 Score=159.93 Aligned_cols=187 Identities=19% Similarity=0.208 Sum_probs=140.3
Q ss_pred eeeecCCCCCCCCCCCCCCCCCC--cccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhc----
Q 001076 645 GVRFDRSIPEGNNLGGFCEDDHG--FFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT---- 718 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~~~c~~~~~--ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La---- 718 (1163)
||..-+|+++|++|-...--.|. .|-++..-.| ..++-|+..|.++.||=.+-+ +-|+|||+||||. +.
T Consensus 183 GvlLygppgtGktLlaraVahht~c~firvsgsel-vqk~igegsrmvrelfvmare---hapsiifmdeids-igs~r~ 257 (404)
T KOG0728|consen 183 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL-VQKYIGEGSRMVRELFVMARE---HAPSIIFMDEIDS-IGSSRV 257 (404)
T ss_pred ceEEecCCCCchhHHHHHHHhhcceEEEEechHHH-HHHHhhhhHHHHHHHHHHHHh---cCCceEeeecccc-cccccc
Confidence 67777799999998621111111 2655532210 257889999999999999888 9999999999999 54
Q ss_pred -----CChhhHHHHHHHHhcCCC-----CEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCccccccccc
Q 001076 719 -----GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSK 788 (1163)
Q Consensus 719 -----~~~~~~~~i~s~L~~L~g-----~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~ 788 (1163)
|..+.-......|..|.| ++-||.|||+.|. |||
T Consensus 258 e~~~ggdsevqrtmlellnqldgfeatknikvimatnridi----------------------ld~-------------- 301 (404)
T KOG0728|consen 258 ESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI----------------------LDP-------------- 301 (404)
T ss_pred cCCCCccHHHHHHHHHHHHhccccccccceEEEEecccccc----------------------ccH--------------
Confidence 122222333334445555 9999999998776 665
Q ss_pred cchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhh-hhcCCCCcccccchhhcccCCch
Q 001076 789 ETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLTT 865 (1163)
Q Consensus 789 ~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~-l~~~~L~~vdLeeLa~~tkg~sg 865 (1163)
||+| |.+|.+||+-|+.++|.+|++||.+ |.- .-..+|..+|++..|-+|
T Consensus 302 -------------------------allrpgridrkiefp~p~e~ar~~ilkihsrkmnl--~rgi~l~kiaekm~gasg 354 (404)
T KOG0728|consen 302 -------------------------ALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNL--TRGINLRKIAEKMPGASG 354 (404)
T ss_pred -------------------------hhcCCCcccccccCCCCCHHHHHHHHHHhhhhhch--hcccCHHHHHHhCCCCcc
Confidence 8888 9999999999999999999999987 421 256789999999999999
Q ss_pred hhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhhhhhh
Q 001076 866 EGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSES 914 (1163)
Q Consensus 866 adIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~dF~~al~ei 914 (1163)
|+++++|++|.-||++.+. +-++..||+.+..++
T Consensus 355 aevk~vcteagm~alrerr---------------vhvtqedfemav~kv 388 (404)
T KOG0728|consen 355 AEVKGVCTEAGMYALRERR---------------VHVTQEDFEMAVAKV 388 (404)
T ss_pred chhhhhhhhhhHHHHHHhh---------------ccccHHHHHHHHHHH
Confidence 9999999999999997542 345667887765443
No 73
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=4e-15 Score=160.21 Aligned_cols=187 Identities=18% Similarity=0.194 Sum_probs=142.7
Q ss_pred eeeecCCCCCCCCCC-CCCCCCCC--cccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcC--
Q 001076 645 GVRFDRSIPEGNNLG-GFCEDDHG--FFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG-- 719 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~-~~c~~~~~--ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~-- 719 (1163)
||..-+|+++|++|+ ..|-.-.. |..-++-.- ...+-|+.-.+++-.|.++.+ ..|.||||||+|.+=.+
T Consensus 207 GvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL--VQMfIGdGAkLVRDAFaLAKE---kaP~IIFIDElDAIGtKRf 281 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL--VQMFIGDGAKLVRDAFALAKE---KAPTIIFIDELDAIGTKRF 281 (424)
T ss_pred ceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH--HhhhhcchHHHHHHHHHHhhc---cCCeEEEEechhhhccccc
Confidence 566667999999999 33432222 554444322 356778888888888888877 89999999999994333
Q ss_pred ------ChhhHHHHHHHHhcCCC-----CEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCccccccccc
Q 001076 720 ------NNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSK 788 (1163)
Q Consensus 720 ------~~~~~~~i~s~L~~L~g-----~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~ 788 (1163)
..+.-......|..|.| .|-||.+|||.|. |||
T Consensus 282 DSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi----------------------LDP-------------- 325 (424)
T KOG0652|consen 282 DSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI----------------------LDP-------------- 325 (424)
T ss_pred cccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc----------------------cCH--------------
Confidence 22233333344455555 8999999998887 666
Q ss_pred cchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhh-hhcCCCCcccccchhhcccCCch
Q 001076 789 ETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLTT 865 (1163)
Q Consensus 789 ~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~-l~~~~L~~vdLeeLa~~tkg~sg 865 (1163)
||+| |++|.+||++|...+|..|++||.+ |.-+ ++++.++||..|..|.|
T Consensus 326 -------------------------ALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~--~DvNfeELaRsTddFNG 378 (424)
T KOG0652|consen 326 -------------------------ALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS--DDVNFEELARSTDDFNG 378 (424)
T ss_pred -------------------------HHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC--CCCCHHHHhhcccccCc
Confidence 8999 9999999999999999999999988 6543 78999999999999999
Q ss_pred hhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhhhhhh
Q 001076 866 EGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSES 914 (1163)
Q Consensus 866 adIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~dF~~al~ei 914 (1163)
|..+++|-+|.-.|++|-. -++...||+....++
T Consensus 379 AQcKAVcVEAGMiALRr~a---------------tev~heDfmegI~eV 412 (424)
T KOG0652|consen 379 AQCKAVCVEAGMIALRRGA---------------TEVTHEDFMEGILEV 412 (424)
T ss_pred hhheeeehhhhHHHHhccc---------------ccccHHHHHHHHHHH
Confidence 9999999999999998643 134567887765555
No 74
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.54 E-value=7e-14 Score=153.25 Aligned_cols=191 Identities=23% Similarity=0.305 Sum_probs=142.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~ 1024 (1163)
...|++++|+++++++|.-++.....+ ....-++||+||||.|||+||.-||+++|.++.....+.+.-
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r---------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-- 90 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKR---------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-- 90 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhc---------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC--
Confidence 357899999999999999888765443 233468999999999999999999999999998887766532
Q ss_pred ccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHh-cCCccc------CCCCEEEEEEeC
Q 001076 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW-DGLRTK------DKERVLVLAATN 1097 (1163)
Q Consensus 1025 ~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~L-dgl~~k------~~~~VlVIaTTN 1097 (1163)
..-+..++... ....|||||||++| ++...+.+...+..|...+ -|..+. +-.++-+|++|.
T Consensus 91 ----~gDlaaiLt~L--e~~DVLFIDEIHrl-----~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATT 159 (332)
T COG2255 91 ----PGDLAAILTNL--EEGDVLFIDEIHRL-----SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATT 159 (332)
T ss_pred ----hhhHHHHHhcC--CcCCeEEEehhhhc-----ChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecc
Confidence 12233343332 23479999999988 3444455555555543222 111111 125889999999
Q ss_pred CCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCHHH
Q 001076 1098 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSD 1157 (1163)
Q Consensus 1098 ~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySgaD 1157 (1163)
+...|...++.||+.+..+...+.++-.+|+.......++. ++....+||+.+.|.-.-.
T Consensus 160 r~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIA 220 (332)
T COG2255 160 RAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIA 220 (332)
T ss_pred ccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHH
Confidence 99999999999999999999999999999999988776655 4556788999998865533
No 75
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.54 E-value=4.1e-14 Score=176.56 Aligned_cols=183 Identities=20% Similarity=0.332 Sum_probs=135.5
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 001076 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1016 (1163)
Q Consensus 947 tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL----------g~pfi~Id 1016 (1163)
.++.++|.++..+.+.+.+.. +...++||+||||||||++|+++|+.. +..++.++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r--------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 456789999999988887642 122578999999999999999999875 45566666
Q ss_pred ccccc--cccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEE
Q 001076 1017 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1094 (1163)
Q Consensus 1017 ~seL~--s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIa 1094 (1163)
+..+. ..+.|+.+..++.+|..+.+..++||||||||.|++.......+.....++..++ .+..+.+|+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L---------~~g~i~vIg 320 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---------SSGKIRVIG 320 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH---------hCCCeEEEe
Confidence 66655 3567888999999999998888999999999999876543222222222222222 236799999
Q ss_pred EeCCCC-----CCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-----ChhhHHHHHHHcCCC
Q 001076 1095 ATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGY 1153 (1163)
Q Consensus 1095 TTN~p~-----~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-----~dvdl~~LA~~TeGy 1153 (1163)
+|+.++ ..|++|.|||+ .|.|+.|+.+++.+|++.+..++... .+..+..++.++..|
T Consensus 321 ATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ry 388 (758)
T PRK11034 321 STTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKY 388 (758)
T ss_pred cCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhcc
Confidence 998753 67999999995 89999999999999999887664433 334455555555554
No 76
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2.9e-15 Score=180.07 Aligned_cols=172 Identities=22% Similarity=0.320 Sum_probs=135.1
Q ss_pred eeeecCCCCCCCCCCCCCCCC---CCcccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhc---
Q 001076 645 GVRFDRSIPEGNNLGGFCEDD---HGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT--- 718 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~~~c~~~---~~ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La--- 718 (1163)
||+.=.|+++|++|-+----+ --||.-.+.+- .-..++.--.-+|.||+.+.. +.|.||||||||. +.
T Consensus 185 GvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~F--VemfVGvGAsRVRdLF~qAkk---~aP~IIFIDEiDA-vGr~R 258 (596)
T COG0465 185 GVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF--VEMFVGVGASRVRDLFEQAKK---NAPCIIFIDEIDA-VGRQR 258 (596)
T ss_pred ceeEecCCCCCcHHHHHHHhcccCCCceeccchhh--hhhhcCCCcHHHHHHHHHhhc---cCCCeEEEehhhh-ccccc
Confidence 667777899999987322222 22665556655 235578778888988888776 9999999999999 65
Q ss_pred ------CChhhHHHHHHHHhcCCC-----CEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCcccccccc
Q 001076 719 ------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRS 787 (1163)
Q Consensus 719 ------~~~~~~~~i~s~L~~L~g-----~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~ 787 (1163)
|+++.+..+--.|-.+.| .||||++|||+|+ +||
T Consensus 259 g~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdV----------------------lD~------------- 303 (596)
T COG0465 259 GAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDV----------------------LDP------------- 303 (596)
T ss_pred CCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCccc----------------------chH-------------
Confidence 244555444444544544 7999999998777 554
Q ss_pred ccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhhhhcCCC-CcccccchhhcccCCc
Q 001076 788 KETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLT 864 (1163)
Q Consensus 788 ~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~s 864 (1163)
||+| ||+||+..++||++||.+|+++|.+ +.++ +++++..+|..|.||+
T Consensus 304 --------------------------ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~--~~~l~~~Vdl~~iAr~tpGfs 355 (596)
T COG0465 304 --------------------------ALLRPGRFDRQILVELPDIKGREQILKVHAK--NKPLAEDVDLKKIARGTPGFS 355 (596)
T ss_pred --------------------------hhcCCCCcceeeecCCcchhhHHHHHHHHhh--cCCCCCcCCHHHHhhhCCCcc
Confidence 8999 9999999999999999999999954 4444 8999999999999999
Q ss_pred hhhhhhHHhHHhhhhhhhcCC
Q 001076 865 TEGVEKIVGWALSHHFMHCSE 885 (1163)
Q Consensus 865 gadIe~Lv~~Aas~Al~r~~~ 885 (1163)
||+++.++.+|+++|.+++..
T Consensus 356 GAdL~nl~NEAal~aar~n~~ 376 (596)
T COG0465 356 GADLANLLNEAALLAARRNKK 376 (596)
T ss_pred cchHhhhHHHHHHHHHHhcCe
Confidence 999999999999999987653
No 77
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.53 E-value=1.1e-13 Score=175.49 Aligned_cols=185 Identities=19% Similarity=0.334 Sum_probs=140.9
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL----------g~pfi~I 1015 (1163)
..+++++|+++.++.+.+.+.. +...++||+||||+|||++|+.+|+.+ +..++.+
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r--------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLR--------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhc--------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 4677999999987777765532 122579999999999999999999987 3567888
Q ss_pred ecccccc--ccccchHHHHHHHHHHHhcc-CCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEE
Q 001076 1016 SMSSITS--KWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1163)
Q Consensus 1016 d~seL~s--~~~Ge~E~~Ir~lF~~A~k~-~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlV 1092 (1163)
++..+.. .+.|+.+..++.+|..+++. .+.||||||||.|.+.+...+..... +.|.-.+ .+..+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~----n~Lkp~l------~~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAA----NLLKPAL------ARGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHH----HHhhHHh------hCCCeEE
Confidence 8887763 57889999999999998754 57999999999998655432322222 2222222 2367999
Q ss_pred EEEeCCC-----CCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCC----C-CChhhHHHHHHHcCCCCH
Q 001076 1093 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE----L-ASDVDLEGIANMADGYSG 1155 (1163)
Q Consensus 1093 IaTTN~p-----~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~----l-~~dvdl~~LA~~TeGySg 1155 (1163)
|+||+.. ..++++|.||| ..|.|+.|+.+++.+||+.+..... + ..+..+..++.++++|-.
T Consensus 320 IgaTT~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred EEecCHHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 9999753 46899999999 5899999999999999877765432 2 267778999999998865
No 78
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.52 E-value=1.2e-13 Score=175.40 Aligned_cols=184 Identities=22% Similarity=0.356 Sum_probs=140.2
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL----------g~pfi~I 1015 (1163)
..+++++|.++.++.+.+.+.. +...++||+||||+|||++|+++|..+ +.+++.+
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc--------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 3567899999987777776642 122479999999999999999999988 7889999
Q ss_pred eccccc--cccccchHHHHHHHHHHHhc-cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEE
Q 001076 1016 SMSSIT--SKWFGEGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1163)
Q Consensus 1016 d~seL~--s~~~Ge~E~~Ir~lF~~A~k-~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlV 1092 (1163)
++..+. .++.|+.+..++.+|..+.+ ..+.||||||||.|.+.....+..... +.|...+ .+..+.+
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~----~~lkp~l------~~g~l~~ 310 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAG----NMLKPAL------ARGELHC 310 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHH----HHhcchh------hcCCCeE
Confidence 988876 45778899999999988654 468999999999998665443333222 2222111 3467999
Q ss_pred EEEeCCCC-----CCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-----ChhhHHHHHHHcCCCC
Q 001076 1093 LAATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGYS 1154 (1163)
Q Consensus 1093 IaTTN~p~-----~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-----~dvdl~~LA~~TeGyS 1154 (1163)
|++|+..+ .+|+++.|||+ .|.+..|+.+++..|++.+..+.... .+..+...+.+++.|-
T Consensus 311 IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~ 381 (857)
T PRK10865 311 VGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYI 381 (857)
T ss_pred EEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccc
Confidence 99998765 58999999996 68899999999999999887664322 4555666777888776
No 79
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.8e-13 Score=160.45 Aligned_cols=179 Identities=18% Similarity=0.232 Sum_probs=132.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p------------- 1011 (1163)
..+|++++|++.+...|...+.. .+.+..+||+||+|||||++|+.+|+.+++.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~-------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKS-------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 46899999999999999887752 2233469999999999999999999999763
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHh----ccCCeEEEEccccccccCCCCcchHHHHHHHHHHHH
Q 001076 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1163)
Q Consensus 1012 -----------fi~Id~seL~s~~~Ge~E~~Ir~lF~~A~----k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL 1076 (1163)
|+.++... ...-..++.+...+. .....|+||||+|.|- ...++.|+
T Consensus 81 C~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------~~A~NALL 142 (484)
T PRK14956 81 CLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------DQSFNALL 142 (484)
T ss_pred HHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------HHHHHHHH
Confidence 33333211 011223444444333 2345699999999882 23456666
Q ss_pred HHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCH
Q 001076 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1163)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySg 1155 (1163)
..++. ...++++|++|+.++.|.+++++|+ .++.|..++.++..++++.++.+.++. ++..+..|++.++|--.
T Consensus 143 KtLEE----Pp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 143 KTLEE----PPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HHhhc----CCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHH
Confidence 66644 3367899999999999999999999 689999999999999999999887654 66778999999998655
Q ss_pred HHHH
Q 001076 1156 SDLK 1159 (1163)
Q Consensus 1156 aDLk 1159 (1163)
.-|.
T Consensus 218 dAL~ 221 (484)
T PRK14956 218 DMLS 221 (484)
T ss_pred HHHH
Confidence 4443
No 80
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=2.3e-13 Score=166.45 Aligned_cols=179 Identities=21% Similarity=0.244 Sum_probs=133.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p------------- 1011 (1163)
..+|++|+|++.+++.|..++.. .+.++.+||+||+|+|||++|+.+|+.+++.
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~-------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDG-------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 46899999999999999988752 2334568999999999999999999999652
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHhc----cCCeEEEEccccccccCCCCcchHHHHHHHHHHHH
Q 001076 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1163)
Q Consensus 1012 -----------fi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k----~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL 1076 (1163)
++.+|..+ ...-..++.++..+.. ....||||||+|.|. ...+|.|+
T Consensus 79 Cr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------------~~A~NALL 140 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT------------NHAFNAML 140 (830)
T ss_pred HHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC------------HHHHHHHH
Confidence 33333221 1112235555554432 235799999999883 12345555
Q ss_pred HHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCH
Q 001076 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1163)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySg 1155 (1163)
..|+.. ..+++||++||.+..|.+.+++|+ .+|.|..++.++..++|+.++.++++. ++..+..|++.++|--.
T Consensus 141 KtLEEP----P~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmR 215 (830)
T PRK07003 141 KTLEEP----PPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMR 215 (830)
T ss_pred HHHHhc----CCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 555442 357899999999999999999999 789999999999999999999887764 56678889999988765
Q ss_pred HHHH
Q 001076 1156 SDLK 1159 (1163)
Q Consensus 1156 aDLk 1159 (1163)
.-|.
T Consensus 216 dALs 219 (830)
T PRK07003 216 DALS 219 (830)
T ss_pred HHHH
Confidence 5444
No 81
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=1.9e-13 Score=165.47 Aligned_cols=178 Identities=21% Similarity=0.256 Sum_probs=131.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~-------------- 1010 (1163)
..+|++|+|++.+++.|.+.+.. .+.+..+||+||+|+|||++|+.+|+.+++
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~-------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQ-------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 46899999999999999988853 233456899999999999999999999976
Q ss_pred ---------------cEEEEeccccccccccchHHHHHHHHHHHh----ccCCeEEEEccccccccCCCCcchHHHHHHH
Q 001076 1011 ---------------NFINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKM 1071 (1163)
Q Consensus 1011 ---------------pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~----k~~PsILfIDEID~L~g~r~s~~~~eal~~i 1071 (1163)
.++.++... ...-..++.+...+. .....|+||||+|.|- ...
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------~~A 140 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------NHA 140 (700)
T ss_pred cccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC------------HHH
Confidence 223333221 011233455544433 2335799999999882 234
Q ss_pred HHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHc
Q 001076 1072 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 1150 (1163)
Q Consensus 1072 l~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~T 1150 (1163)
.|.||..|+. ...+++||++||.+..|.+.+++|+ .++.|..++.++..+.++.++.++++. ++..+..|++.+
T Consensus 141 aNALLKTLEE----PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A 215 (700)
T PRK12323 141 FNAMLKTLEE----PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAA 215 (700)
T ss_pred HHHHHHhhcc----CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 5667766654 3367899999999999999999999 789999999999999999998876655 344578888888
Q ss_pred CCCCHHHH
Q 001076 1151 DGYSGSDL 1158 (1163)
Q Consensus 1151 eGySgaDL 1158 (1163)
+|--..-|
T Consensus 216 ~Gs~RdAL 223 (700)
T PRK12323 216 QGSMRDAL 223 (700)
T ss_pred CCCHHHHH
Confidence 87655433
No 82
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=7.4e-15 Score=179.24 Aligned_cols=173 Identities=20% Similarity=0.288 Sum_probs=126.0
Q ss_pred eeeecCCCCCCCCCCCCCCCCCC---cccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcC--
Q 001076 645 GVRFDRSIPEGNNLGGFCEDDHG---FFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG-- 719 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~~~c~~~~~---ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~-- 719 (1163)
||+..+|+++|+||-+-.--++. ||--.+..-.| ..++..---++.||+.+.. +-|+|||+||||. +++
T Consensus 346 GvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE--~~~g~~asrvr~lf~~ar~---~aP~iifideida-~~~~r 419 (774)
T KOG0731|consen 346 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE--MFVGVGASRVRDLFPLARK---NAPSIIFIDEIDA-VGRKR 419 (774)
T ss_pred ceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH--HhcccchHHHHHHHHHhhc---cCCeEEEeccccc-ccccc
Confidence 78888899999999743333333 43222222222 2233333346666666554 8999999999998 662
Q ss_pred --------ChhhHHHHHHHHhcCCC-----CEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCccccccc
Q 001076 720 --------NNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDR 786 (1163)
Q Consensus 720 --------~~~~~~~i~s~L~~L~g-----~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r 786 (1163)
|++-..-|-..|-.+.| +||||++||++|. ||+
T Consensus 420 ~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~----------------------ld~------------ 465 (774)
T KOG0731|consen 420 GGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDI----------------------LDP------------ 465 (774)
T ss_pred cccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccc----------------------cCH------------
Confidence 33333333333444433 8999999997766 444
Q ss_pred cccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhhhhcCCCCcccccchhhcccCCc
Q 001076 787 SKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLT 864 (1163)
Q Consensus 787 ~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~l~~~~L~~vdLeeLa~~tkg~s 864 (1163)
||+| ||+|++.+++|+++||.+|+++|-.-..-..++++|..||.+|.||+
T Consensus 466 ---------------------------allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~ 518 (774)
T KOG0731|consen 466 ---------------------------ALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFS 518 (774)
T ss_pred ---------------------------HhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCc
Confidence 8999 99999999999999999999999763322358899999999999999
Q ss_pred hhhhhhHHhHHhhhhhhhcC
Q 001076 865 TEGVEKIVGWALSHHFMHCS 884 (1163)
Q Consensus 865 gadIe~Lv~~Aas~Al~r~~ 884 (1163)
||||.-||.+|+..|.++..
T Consensus 519 gadl~n~~neaa~~a~r~~~ 538 (774)
T KOG0731|consen 519 GADLANLCNEAALLAARKGL 538 (774)
T ss_pred HHHHHhhhhHHHHHHHHhcc
Confidence 99999999999999987543
No 83
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.50 E-value=2.4e-13 Score=172.49 Aligned_cols=184 Identities=23% Similarity=0.359 Sum_probs=143.0
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 001076 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1016 (1163)
Q Consensus 947 tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL----------g~pfi~Id 1016 (1163)
.++.++|.++.++.+.+.+.. +..+++||+||||||||++|+++|..+ +.+++.++
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r--------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGR--------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcc--------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 467899999999999887742 233589999999999999999999887 47899999
Q ss_pred ccccc--cccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEE
Q 001076 1017 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1094 (1163)
Q Consensus 1017 ~seL~--s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIa 1094 (1163)
+..+. ..|.|+.++.++.+|..+....+.||||||||.|++.....+.... .+.|...+ .+..+.+|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~----a~lLkp~l------~rg~l~~Ig 312 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDA----ANILKPAL------ARGELQCIG 312 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccH----HHHhHHHH------hCCCcEEEE
Confidence 98876 4678999999999999998888999999999999876543332211 12222222 236789999
Q ss_pred EeCCC-----CCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhh----CCC-CChhhHHHHHHHcCCCCH
Q 001076 1095 ATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK----EEL-ASDVDLEGIANMADGYSG 1155 (1163)
Q Consensus 1095 TTN~p-----~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k----~~l-~~dvdl~~LA~~TeGySg 1155 (1163)
+|+.. ...+++|.+||. .|.+..|+.++...|++.+... ..+ .++..+..++.++.+|.+
T Consensus 313 aTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred eCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 99865 357899999994 6899999999999999876543 222 356678899999999876
No 84
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.50 E-value=3.1e-13 Score=172.03 Aligned_cols=185 Identities=21% Similarity=0.355 Sum_probs=141.4
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL----------g~pfi~I 1015 (1163)
..++.++|.++..+.+.+.+.. +...++||+||||+|||++|+++|+.+ +.+++.+
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 3567899999988887776642 122578999999999999999999886 6788999
Q ss_pred eccccc--cccccchHHHHHHHHHHHhcc-CCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEE
Q 001076 1016 SMSSIT--SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1163)
Q Consensus 1016 d~seL~--s~~~Ge~E~~Ir~lF~~A~k~-~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlV 1092 (1163)
++..+. ..+.|+.+..++.+|..+.+. .+.||||||||.|.+.....+... ..+.|...+ .+..+.+
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d----~~~~Lk~~l------~~g~i~~ 305 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMD----AGNMLKPAL------ARGELHC 305 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhH----HHHHhchhh------hcCceEE
Confidence 988875 467888999999999988764 589999999999986443322222 222222221 2367999
Q ss_pred EEEeCCC-----CCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCC-----CChhhHHHHHHHcCCCCH
Q 001076 1093 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-----ASDVDLEGIANMADGYSG 1155 (1163)
Q Consensus 1093 IaTTN~p-----~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l-----~~dvdl~~LA~~TeGySg 1155 (1163)
|++|+.. ..+|+++.|||. .|.++.|+.+++..|++.+..+... ..+..+..++.++.+|-.
T Consensus 306 IgaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~ 377 (852)
T TIGR03346 306 IGATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYIT 377 (852)
T ss_pred EEeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccc
Confidence 9999875 468999999995 6889999999999999998777443 255677888888888865
No 85
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.48 E-value=5.6e-13 Score=156.67 Aligned_cols=211 Identities=23% Similarity=0.324 Sum_probs=136.1
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhc--CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc-cccccc
Q 001076 951 IGALENVKDTLKELVMLPLQRPELFCK--GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKWFGE 1027 (1163)
Q Consensus 951 I~Gleevk~~L~e~V~lpl~~pelf~k--~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~-s~~~Ge 1027 (1163)
|+|++.+++.+...+...+.+-..... .....+..++||+||||||||++|+++|+.++.||+.+++..+. ..|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 789999999998777544332211000 01223446899999999999999999999999999999998876 357776
Q ss_pred hH-HHHHHHHHHH----hccCCeEEEEccccccccCCCCcch-HH-HHHHHHHHHHHHhcCCc---------ccCCCCEE
Q 001076 1028 GE-KYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGE-HE-AMRKMKNEFMVNWDGLR---------TKDKERVL 1091 (1163)
Q Consensus 1028 ~E-~~Ir~lF~~A----~k~~PsILfIDEID~L~g~r~s~~~-~e-al~~il~~LL~~Ldgl~---------~k~~~~Vl 1091 (1163)
.. ..+..++..+ .+..++||||||||.+.....++.. .. ....+.+.|+..|++-. .....+.+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 43 3445554432 3457899999999999754322110 00 01135566666666431 11223456
Q ss_pred EEEEeCCCC----------------------------------------------------CCCHHHHhccCcEEEecCC
Q 001076 1092 VLAATNRPF----------------------------------------------------DLDEAVVRRLPRRLMVNLP 1119 (1163)
Q Consensus 1092 VIaTTN~p~----------------------------------------------------~Ld~aLlrRFd~vI~I~~P 1119 (1163)
+|+|+|..+ -+.|+|+.|++.++.|...
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L 312 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEEL 312 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCC
Confidence 666655410 1467888899999999999
Q ss_pred CHHHHHHHHHH----HHh-------hCCCC---ChhhHHHHHHHc--CCCCHHHHHhh
Q 001076 1120 DAPNREKIIRV----ILA-------KEELA---SDVDLEGIANMA--DGYSGSDLKVD 1161 (1163)
Q Consensus 1120 d~eeR~eILk~----ll~-------k~~l~---~dvdl~~LA~~T--eGySgaDLk~L 1161 (1163)
+.++..+|+.. +++ ..++. ++..++.|++.+ .+|...-|+.+
T Consensus 313 ~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrri 370 (412)
T PRK05342 313 DEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSI 370 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHH
Confidence 99999999972 333 22222 455577788763 35555555543
No 86
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.47 E-value=1.9e-14 Score=185.72 Aligned_cols=130 Identities=20% Similarity=0.175 Sum_probs=102.1
Q ss_pred HHHHHHHHHhhccCCCeEEEEcchhhhhcCCh---hhHHHHHHHHhcC-----CCCEEEEEeccccccccccCCCCCcee
Q 001076 690 INELFEVALNESKSSPLIVFVKDIEKSLTGNN---DAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSHPGGLLF 761 (1163)
Q Consensus 690 l~~l~evl~~e~k~~P~IIffddid~~La~~~---~~~~~i~s~L~~L-----~g~VivIgs~~~~d~~~~~~~~~~~~~ 761 (1163)
|+.+|+.+.. +.|.||||||||. |+.++ ...+.|...|... ..+||||||||++|.
T Consensus 1721 Ir~lFelARk---~SPCIIFIDEIDa-L~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~------------ 1784 (2281)
T CHL00206 1721 ITLQFELAKA---MSPCIIWIPNIHD-LNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQK------------ 1784 (2281)
T ss_pred HHHHHHHHHH---CCCeEEEEEchhh-cCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCccc------------
Confidence 6777777755 9999999999999 66432 2245555555533 237999999996665
Q ss_pred eccCCchhhhccccCCCCccccccccccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHH
Q 001076 762 TKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISI 839 (1163)
Q Consensus 762 ~~~~~~~~~lldp~~pd~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~I 839 (1163)
||| ||+| ||++++++++|+..+|..++.|
T Consensus 1785 ----------LDP---------------------------------------ALLRPGRFDR~I~Ir~Pd~p~R~kiL~I 1815 (2281)
T CHL00206 1785 ----------VDP---------------------------------------ALIAPNKLNTCIKIRRLLIPQQRKHFFT 1815 (2281)
T ss_pred ----------CCH---------------------------------------hHcCCCCCCeEEEeCCCCchhHHHHHHH
Confidence 554 8999 9999999999999999999987
Q ss_pred HhhhhcCCC--CcccccchhhcccCCchhhhhhHHhHHhhhhhhhcC
Q 001076 840 RSVLSRNGL--DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCS 884 (1163)
Q Consensus 840 HT~l~~~~L--~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al~r~~ 884 (1163)
+...+.-.+ ..++++.+|..|.||+||||+.||.+|++.|+.+..
T Consensus 1816 Ll~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~k 1862 (2281)
T CHL00206 1816 LSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKK 1862 (2281)
T ss_pred HHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 543333233 346899999999999999999999999999997643
No 87
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.47 E-value=3.3e-14 Score=166.40 Aligned_cols=188 Identities=17% Similarity=0.181 Sum_probs=137.8
Q ss_pred eeeeecCCCCCCCCCCC--CCCCCCC-cccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcCC
Q 001076 644 IGVRFDRSIPEGNNLGG--FCEDDHG-FFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN 720 (1163)
Q Consensus 644 vgV~Fd~~~~~~~~l~~--~c~~~~~-ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~~ 720 (1163)
-||.|.+|+|+||++-. .|..... |+...+..- .++|.++.+..++.+|+.+.. ++|.||||||||.++.++
T Consensus 180 kgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l--~~k~~ge~~~~lr~lf~~A~~---~~P~ILfIDEID~i~~~r 254 (398)
T PTZ00454 180 RGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF--VQKYLGEGPRMVRDVFRLARE---NAPSIIFIDEVDSIATKR 254 (398)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH--HHHhcchhHHHHHHHHHHHHh---cCCeEEEEECHhhhcccc
Confidence 47889999999999872 1221122 332222222 468999999999999988765 899999999999965422
Q ss_pred --------hhhHHHHHHHHhcC-----CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCcccccccc
Q 001076 721 --------NDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRS 787 (1163)
Q Consensus 721 --------~~~~~~i~s~L~~L-----~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~ 787 (1163)
.+....+...|..+ .++|+||++||+++. |||
T Consensus 255 ~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~----------------------LDp------------- 299 (398)
T PTZ00454 255 FDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT----------------------LDP------------- 299 (398)
T ss_pred ccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh----------------------CCH-------------
Confidence 12222233333333 248999999996555 444
Q ss_pred ccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhhhhcCCC-CcccccchhhcccCCc
Q 001076 788 KETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLT 864 (1163)
Q Consensus 788 ~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~s 864 (1163)
|++| ||++.+++++|+...|..|+++|+.. .++ .++++++++..+.||+
T Consensus 300 --------------------------AllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~--~~l~~dvd~~~la~~t~g~s 351 (398)
T PTZ00454 300 --------------------------ALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK--MNLSEEVDLEDFVSRPEKIS 351 (398)
T ss_pred --------------------------HHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc--CCCCcccCHHHHHHHcCCCC
Confidence 7777 99999999999999999999999762 234 6789999999999999
Q ss_pred hhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhhhhhh
Q 001076 865 TEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSES 914 (1163)
Q Consensus 865 gadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~dF~~al~ei 914 (1163)
|+||+.||.+|...|+++.. ..+...||..+...+
T Consensus 352 gaDI~~l~~eA~~~A~r~~~---------------~~i~~~df~~A~~~v 386 (398)
T PTZ00454 352 AADIAAICQEAGMQAVRKNR---------------YVILPKDFEKGYKTV 386 (398)
T ss_pred HHHHHHHHHHHHHHHHHcCC---------------CccCHHHHHHHHHHH
Confidence 99999999999999986532 144567887775554
No 88
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=2e-12 Score=154.58 Aligned_cols=174 Identities=18% Similarity=0.223 Sum_probs=125.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~-------------- 1010 (1163)
..+|++++|++.+++.|...+.. .+.+..+||+||||||||++|+++|+.+++
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~-------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKK-------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 46899999999998888887642 223456999999999999999999999865
Q ss_pred ----------cEEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEccccccccCCCCcchHHHHHHHHHHHH
Q 001076 1011 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1163)
Q Consensus 1011 ----------pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~----~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL 1076 (1163)
.++.++.+.- ..-..++.+...+... ...||||||+|.|. ...++.|+
T Consensus 77 c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt------------~~a~~~LL 138 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT------------KEAFNALL 138 (472)
T ss_pred HHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH------------HHHHHHHH
Confidence 3445544221 1123455555544322 34699999999873 12334555
Q ss_pred HHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCC
Q 001076 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1154 (1163)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGyS 1154 (1163)
..++.. +..+++|++|+.+..+.+++++|+ .++.|..++.++...+++..+...++. ++..+..|+..+.|--
T Consensus 139 k~LE~p----~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~Gdl 212 (472)
T PRK14962 139 KTLEEP----PSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGL 212 (472)
T ss_pred HHHHhC----CCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCH
Confidence 555432 345777777777889999999999 689999999999999999998776543 5666788888776533
No 89
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2e-12 Score=160.78 Aligned_cols=178 Identities=22% Similarity=0.257 Sum_probs=129.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------ 1012 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pf------------ 1012 (1163)
..+|++|+|++.+++.|..++.. .+.+..+||+||+|+|||++|+++|+.+++.-
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~-------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQ-------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 46899999999999999888752 22335579999999999999999999997641
Q ss_pred ------------EEEeccccccccccchHHHHHHHHHHHh----ccCCeEEEEccccccccCCCCcchHHHHHHHHHHHH
Q 001076 1013 ------------INISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1163)
Q Consensus 1013 ------------i~Id~seL~s~~~Ge~E~~Ir~lF~~A~----k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL 1076 (1163)
+.++... ...-..++.+...+. .....|+||||+|.|- ...++.|+
T Consensus 79 C~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT------------~eAqNALL 140 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS------------RSSFNALL 140 (944)
T ss_pred HHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC------------HHHHHHHH
Confidence 1111110 011223455544433 2335799999999882 34556666
Q ss_pred HHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCH
Q 001076 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1163)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySg 1155 (1163)
..|+. .+.++++|++|+.+..|.+.+++|+ .++.|..++.++..+++++++...++. .+..+..|++.+.|--+
T Consensus 141 KtLEE----PP~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R 215 (944)
T PRK14949 141 KTLEE----PPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMR 215 (944)
T ss_pred HHHhc----cCCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 66654 2356788888888888999999999 789999999999999999998876544 55668889999988655
Q ss_pred HHH
Q 001076 1156 SDL 1158 (1163)
Q Consensus 1156 aDL 1158 (1163)
.-+
T Consensus 216 ~AL 218 (944)
T PRK14949 216 DAL 218 (944)
T ss_pred HHH
Confidence 433
No 90
>PRK04195 replication factor C large subunit; Provisional
Probab=99.45 E-value=2.3e-12 Score=154.76 Aligned_cols=181 Identities=25% Similarity=0.359 Sum_probs=129.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~ 1024 (1163)
..+|++++|++++++.|..++.... + ..+.+++||+||||+|||++|+++|++++++++.+++++...
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~-------~---g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~-- 77 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWL-------K---GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT-- 77 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHh-------c---CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc--
Confidence 4679999999999999999886422 1 234578999999999999999999999999999999876432
Q ss_pred ccchHHHHHHHHHHHhc------cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCC
Q 001076 1025 FGEGEKYVKAVFSLASK------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1098 (1163)
Q Consensus 1025 ~Ge~E~~Ir~lF~~A~k------~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~ 1098 (1163)
...+..+...+.. ..+.||+|||+|.|.+.... . ..+.++..++. .+..+|+++|.
T Consensus 78 ----~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~----~----~~~aL~~~l~~------~~~~iIli~n~ 139 (482)
T PRK04195 78 ----ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDR----G----GARAILELIKK------AKQPIILTAND 139 (482)
T ss_pred ----HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccch----h----HHHHHHHHHHc------CCCCEEEeccC
Confidence 1123333333322 24689999999988532111 1 12233333331 23456667888
Q ss_pred CCCCCH-HHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCHH
Q 001076 1099 PFDLDE-AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 1156 (1163)
Q Consensus 1099 p~~Ld~-aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySga 1156 (1163)
+..+.. .+++|+ ..|.|+.|+.+++..+++.++...++. ++..+..|+..+.|--..
T Consensus 140 ~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ 198 (482)
T PRK04195 140 PYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRS 198 (482)
T ss_pred ccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 888887 565565 789999999999999999999877654 556688888887764443
No 91
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.44 E-value=7.9e-13 Score=153.69 Aligned_cols=201 Identities=24% Similarity=0.380 Sum_probs=140.5
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc-ccccc-c
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKWFG-E 1027 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~-s~~~G-e 1027 (1163)
.|+|++++++.+..++.....+..+.....-..++++|||+||||+|||++|++||..++.+|+.+++..+. ..|.| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 377999999999887765433322211111123458999999999999999999999999999999998876 36877 5
Q ss_pred hHHHHHHHHHHHh-------------------------------------------------------------------
Q 001076 1028 GEKYVKAVFSLAS------------------------------------------------------------------- 1040 (1163)
Q Consensus 1028 ~E~~Ir~lF~~A~------------------------------------------------------------------- 1040 (1163)
.+..++.+|..|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 6677777766650
Q ss_pred ------------------------------------------------------------------------ccCCeEEE
Q 001076 1041 ------------------------------------------------------------------------KIAPSVVF 1048 (1163)
Q Consensus 1041 ------------------------------------------------------------------------k~~PsILf 1048 (1163)
..+.+|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 02457999
Q ss_pred EccccccccCCCCcchHHHHHHHHHHHHHHhcCCcc------cCCCCEEEEEEe----CCCCCCCHHHHhccCcEEEecC
Q 001076 1049 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDKERVLVLAAT----NRPFDLDEAVVRRLPRRLMVNL 1118 (1163)
Q Consensus 1049 IDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~------k~~~~VlVIaTT----N~p~~Ld~aLlrRFd~vI~I~~ 1118 (1163)
|||||.++.+..+.+....-.-+.+.||..++|-.. -+..+|++|++. ..|.+|-|+|.-||+.++.+..
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~ 332 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQA 332 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCC
Confidence 999999985542111111112255666666666322 123689999886 3577888999999999999999
Q ss_pred CCHHHHHHHH----HHHHhh-------CCCC---ChhhHHHHHHHc
Q 001076 1119 PDAPNREKII----RVILAK-------EELA---SDVDLEGIANMA 1150 (1163)
Q Consensus 1119 Pd~eeR~eIL----k~ll~k-------~~l~---~dvdl~~LA~~T 1150 (1163)
++.++-.+|| ..++++ .++. .+..+.+||+.+
T Consensus 333 L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A 378 (441)
T TIGR00390 333 LTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELA 378 (441)
T ss_pred CCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHH
Confidence 9999988888 223332 2322 556677888766
No 92
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=2.2e-12 Score=158.03 Aligned_cols=179 Identities=23% Similarity=0.289 Sum_probs=130.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p------------- 1011 (1163)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+.+|+.+++.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~-------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDL-------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 46899999999999999888752 2233558999999999999999999999763
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHh----ccCCeEEEEccccccccCCCCcchHHHHHHHHHHHH
Q 001076 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1163)
Q Consensus 1012 -----------fi~Id~seL~s~~~Ge~E~~Ir~lF~~A~----k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL 1076 (1163)
|+.++... ...-..++.+...+. .....|+||||+|.|- ...+|.|+
T Consensus 79 C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls------------~~a~NALL 140 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALL 140 (647)
T ss_pred HHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC------------HHHHHHHH
Confidence 23333221 011223455444332 2345699999999882 23456666
Q ss_pred HHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCH
Q 001076 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1163)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySg 1155 (1163)
..++. .+..+++|.+|+.+..|.+.+++|+ ..+.|..++.++...+++.++...++. ++..+..|+..++|.-+
T Consensus 141 KtLEE----Pp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R 215 (647)
T PRK07994 141 KTLEE----PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMR 215 (647)
T ss_pred HHHHc----CCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 66654 3356888888888999999999998 899999999999999999998776654 55668889999888665
Q ss_pred HHHH
Q 001076 1156 SDLK 1159 (1163)
Q Consensus 1156 aDLk 1159 (1163)
.-|.
T Consensus 216 ~Al~ 219 (647)
T PRK07994 216 DALS 219 (647)
T ss_pred HHHH
Confidence 4433
No 93
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2.5e-12 Score=156.13 Aligned_cols=173 Identities=22% Similarity=0.251 Sum_probs=128.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~-------------- 1010 (1163)
..+|++++|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~-------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALER-------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 46899999999999999888752 234467899999999999999999999865
Q ss_pred ----------cEEEEeccccccccccchHHHHHHHHHHHhc----cCCeEEEEccccccccCCCCcchHHHHHHHHHHHH
Q 001076 1011 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1163)
Q Consensus 1011 ----------pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k----~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL 1076 (1163)
.++.++.++- ..-..++.+...+.. ....|+||||+|.|- ....+.|+
T Consensus 78 C~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS------------~~A~NALL 139 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS------------THSFNALL 139 (702)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC------------HHHHHHHH
Confidence 3444443321 112345555544422 245799999999882 12345566
Q ss_pred HHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCC
Q 001076 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1153 (1163)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGy 1153 (1163)
..++.. ...+.+|++|+.+..+...+++|+ .++.|..++.++..+.++.++.+.++. ++..+..|++.+.|-
T Consensus 140 KtLEEP----P~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~Gd 212 (702)
T PRK14960 140 KTLEEP----PEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGS 212 (702)
T ss_pred HHHhcC----CCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 555542 356788888888888889999999 789999999999999999999887654 556688888888773
No 94
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.43 E-value=1.6e-12 Score=157.73 Aligned_cols=196 Identities=21% Similarity=0.292 Sum_probs=124.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEE
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFIN 1014 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL----------g~pfi~ 1014 (1163)
..+|++++|++..++.++..+.. ..+.++||+||||||||++|+++.+.+ +.+|+.
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~--------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCG--------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhC--------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 46799999999999888765421 123589999999999999999998753 368999
Q ss_pred Eecccc-------ccccccchHHHH---HHHHH----------HHhccCCeEEEEccccccccCCCCcchHHHHHHHHHH
Q 001076 1015 ISMSSI-------TSKWFGEGEKYV---KAVFS----------LASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1074 (1163)
Q Consensus 1015 Id~seL-------~s~~~Ge~E~~I---r~lF~----------~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~ 1074 (1163)
+||... ....++....-+ ...|. ...+...++||||||+.| +...+..+.+++++
T Consensus 127 id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L-----~~~~q~~LL~~Le~ 201 (531)
T TIGR02902 127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGEL-----HPVQMNKLLKVLED 201 (531)
T ss_pred EccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhC-----CHHHHHHHHHHHHh
Confidence 998642 111122100000 00000 111233589999999988 33344444444433
Q ss_pred HHHHhcC-----Cc------------ccCCCCEEEE-EEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCC
Q 001076 1075 FMVNWDG-----LR------------TKDKERVLVL-AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE 1136 (1163)
Q Consensus 1075 LL~~Ldg-----l~------------~k~~~~VlVI-aTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~ 1136 (1163)
....+.+ .. ..-+.++++| +||+.++.+++++++|+ ..+.++.++.+++.+|++..+++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~k~~ 280 (531)
T TIGR02902 202 RKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAAEKIG 280 (531)
T ss_pred CeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHHHHcC
Confidence 2211110 00 0012234555 55678999999999998 5788999999999999999998876
Q ss_pred CC-ChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1137 LA-SDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1137 l~-~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
+. ++..++.|+..+. .+.++.+++
T Consensus 281 i~is~~al~~I~~y~~--n~Rel~nll 305 (531)
T TIGR02902 281 INLEKHALELIVKYAS--NGREAVNIV 305 (531)
T ss_pred CCcCHHHHHHHHHhhh--hHHHHHHHH
Confidence 54 4455666766554 567776654
No 95
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.42 E-value=9.9e-13 Score=152.94 Aligned_cols=202 Identities=22% Similarity=0.360 Sum_probs=141.2
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-cccc-c
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG-E 1027 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s-~~~G-e 1027 (1163)
.|+|++++++.+..++...+++..+.........+.++||+||||+|||+||++||+.++.+|+.+|+..+.. .|.| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 3789999999998888643332221111111123578999999999999999999999999999999988774 6888 5
Q ss_pred hHHHHHHHHHHHh-------------------------------------------------------------------
Q 001076 1028 GEKYVKAVFSLAS------------------------------------------------------------------- 1040 (1163)
Q Consensus 1028 ~E~~Ir~lF~~A~------------------------------------------------------------------- 1040 (1163)
.+..++.+|..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 5677777777661
Q ss_pred ---c--------------------------------------------------------------------cCCeEEEE
Q 001076 1041 ---K--------------------------------------------------------------------IAPSVVFV 1049 (1163)
Q Consensus 1041 ---k--------------------------------------------------------------------~~PsILfI 1049 (1163)
. ...+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 13469999
Q ss_pred ccccccccCCCCcchHHHHHHHHHHHHHHhcCCcc------cCCCCEEEEEEe----CCCCCCCHHHHhccCcEEEecCC
Q 001076 1050 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDKERVLVLAAT----NRPFDLDEAVVRRLPRRLMVNLP 1119 (1163)
Q Consensus 1050 DEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~------k~~~~VlVIaTT----N~p~~Ld~aLlrRFd~vI~I~~P 1119 (1163)
||||.+..+..+.+....-.-+.+.||..++|-.. -+..+|++|++. ..|.+|-|+|.-||+.++.+..+
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 335 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDAL 335 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 99999986543211111112255667766766322 123689999876 35778889999999999999999
Q ss_pred CHHHHHHHH----HHHHhh-------CCCC---ChhhHHHHHHHcC
Q 001076 1120 DAPNREKII----RVILAK-------EELA---SDVDLEGIANMAD 1151 (1163)
Q Consensus 1120 d~eeR~eIL----k~ll~k-------~~l~---~dvdl~~LA~~Te 1151 (1163)
+.++-.+|| ..++.+ .++. .+..+.+||+.+.
T Consensus 336 ~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~ 381 (443)
T PRK05201 336 TEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAY 381 (443)
T ss_pred CHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHH
Confidence 999988888 324332 2332 5566788887764
No 96
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.42 E-value=4.4e-12 Score=149.61 Aligned_cols=171 Identities=24% Similarity=0.439 Sum_probs=122.2
Q ss_pred CCcccccCcHHHHHH---HHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 001076 946 VTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1163)
Q Consensus 946 ~tfddI~Gleevk~~---L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s 1022 (1163)
.+|++++|++..... |...+.. . ...++||+||||||||+||+++|+.++.+|+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~----------~----~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA----------G----RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc----------C----CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 578899999998665 7666632 1 22479999999999999999999999999999987542
Q ss_pred ccccchHHHHHHHHHHHh----ccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEe--
Q 001076 1023 KWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-- 1096 (1163)
Q Consensus 1023 ~~~Ge~E~~Ir~lF~~A~----k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTT-- 1096 (1163)
....++.++..+. .....||||||||+|. . ...+.|+..++. ..+++|++|
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-----~-------~~q~~LL~~le~------~~iilI~att~ 129 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN-----K-------AQQDALLPHVED------GTITLIGATTE 129 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC-----H-------HHHHHHHHHhhc------CcEEEEEeCCC
Confidence 1234555555553 2256899999999873 1 112333333332 456677665
Q ss_pred CCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhC--CC--CChhhHHHHHHHcCCCCHH
Q 001076 1097 NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE--EL--ASDVDLEGIANMADGYSGS 1156 (1163)
Q Consensus 1097 N~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~--~l--~~dvdl~~LA~~TeGySga 1156 (1163)
|....+++++++|+ .++.+..++.++...+++..+... ++ .++..++.|++.+.|-...
T Consensus 130 n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~ 192 (413)
T PRK13342 130 NPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARR 192 (413)
T ss_pred ChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHH
Confidence 44568899999999 789999999999999999987652 21 3455577888888765443
No 97
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=3.6e-12 Score=149.19 Aligned_cols=189 Identities=16% Similarity=0.243 Sum_probs=126.8
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE-------------
Q 001076 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI------------- 1013 (1163)
Q Consensus 947 tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi------------- 1013 (1163)
.|++|+|++.+++.|...+......+..+. .+.+..+||+||+|+|||++|+++|+.+.+.-.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~----~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAG----SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccC----CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 488999999999999999975433221111 123467999999999999999999998855310
Q ss_pred --EEecccccc---ccccchHHHHHHHHHHHhccC----CeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcc
Q 001076 1014 --NISMSSITS---KWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT 1084 (1163)
Q Consensus 1014 --~Id~seL~s---~~~Ge~E~~Ir~lF~~A~k~~----PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~ 1084 (1163)
.-+.+++.- .-....-..++.++..+...+ ..|+||||+|.|- ....+.|+..++..
T Consensus 79 ~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~------------~~aanaLLk~LEep-- 144 (394)
T PRK07940 79 VLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT------------ERAANALLKAVEEP-- 144 (394)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC------------HHHHHHHHHHhhcC--
Confidence 000011100 000111234778887776532 4699999999882 12235566666542
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHh
Q 001076 1085 KDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKV 1160 (1163)
Q Consensus 1085 k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~ 1160 (1163)
+.++++|.+|+.++.+.+++++|+ ..+.|+.|+.++..+++.. +.++ +......++..++|..+..+..
T Consensus 145 --~~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~---~~~~-~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 145 --PPRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVR---RDGV-DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred --CCCCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHH---hcCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 234555556666899999999999 6999999999987777753 2233 3456778999999998876654
No 98
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.41 E-value=1.5e-13 Score=160.82 Aligned_cols=190 Identities=20% Similarity=0.230 Sum_probs=138.6
Q ss_pred eeeeecCCCCCCCCCC--CCCCCCCC-cccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcCC
Q 001076 644 IGVRFDRSIPEGNNLG--GFCEDDHG-FFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN 720 (1163)
Q Consensus 644 vgV~Fd~~~~~~~~l~--~~c~~~~~-ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~~ 720 (1163)
-||.+.+|+|+||++- ..|..-.. |+.-....- .++|.++....++.+|+.+.. ++|.||||||||.++..+
T Consensus 166 ~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l--~~~~~g~~~~~i~~~f~~a~~---~~p~IlfiDEiD~l~~~r 240 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL--VQKFIGEGARLVRELFELARE---KAPSIIFIDEIDAIAAKR 240 (389)
T ss_pred CceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHH--hHhhccchHHHHHHHHHHHHh---cCCeEEEEechhhhhccc
Confidence 4788999999999987 22222222 443222211 367889888899988887765 899999999999965421
Q ss_pred --------hhhHHHHHHHHhcCC-----CCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCcccccccc
Q 001076 721 --------NDAYGALKSKLENLP-----SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRS 787 (1163)
Q Consensus 721 --------~~~~~~i~s~L~~L~-----g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~ 787 (1163)
.+....+...|..+. ++|+||+++|+++. ||+
T Consensus 241 ~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~----------------------ld~------------- 285 (389)
T PRK03992 241 TDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDI----------------------LDP------------- 285 (389)
T ss_pred ccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhh----------------------CCH-------------
Confidence 222233333333343 48999999996543 333
Q ss_pred ccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhhhhcCCC-CcccccchhhcccCCc
Q 001076 788 KETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLT 864 (1163)
Q Consensus 788 ~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~s 864 (1163)
|++| ||++.+++++|+...|..|+++|.. ...+ .++++..|+..|.||+
T Consensus 286 --------------------------allRpgRfd~~I~v~~P~~~~R~~Il~~~~~--~~~~~~~~~~~~la~~t~g~s 337 (389)
T PRK03992 286 --------------------------AILRPGRFDRIIEVPLPDEEGRLEILKIHTR--KMNLADDVDLEELAELTEGAS 337 (389)
T ss_pred --------------------------HHcCCccCceEEEECCCCHHHHHHHHHHHhc--cCCCCCcCCHHHHHHHcCCCC
Confidence 7877 9999999999999999999999964 2234 4688999999999999
Q ss_pred hhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhhhhhhhh
Q 001076 865 TEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKS 916 (1163)
Q Consensus 865 gadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~dF~~al~eikp 916 (1163)
|+||+.+|++|+..|+.+.. -.+...||+.|...+.+
T Consensus 338 gadl~~l~~eA~~~a~~~~~---------------~~i~~~d~~~A~~~~~~ 374 (389)
T PRK03992 338 GADLKAICTEAGMFAIRDDR---------------TEVTMEDFLKAIEKVMG 374 (389)
T ss_pred HHHHHHHHHHHHHHHHHcCC---------------CCcCHHHHHHHHHHHhc
Confidence 99999999999999987522 13567888888776654
No 99
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=6.2e-12 Score=146.03 Aligned_cols=173 Identities=20% Similarity=0.256 Sum_probs=124.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p------------- 1011 (1163)
..+|++|+|++.+++.+...+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~-------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSL-------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHc-------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 46799999999999999887742 2234568999999999999999999998642
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEccccccccCCCCcchHHHHHHHHHHHH
Q 001076 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1163)
Q Consensus 1012 -----------fi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~----~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL 1076 (1163)
++.++... ...-..++.+...+... ...|+||||+|.+. ....+.|+
T Consensus 79 c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------------~~a~naLL 140 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS------------RHSFNALL 140 (363)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC------------HHHHHHHH
Confidence 22222111 01223455665554322 24699999999872 12334555
Q ss_pred HHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCC-CChhhHHHHHHHcCCC
Q 001076 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGY 1153 (1163)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l-~~dvdl~~LA~~TeGy 1153 (1163)
..++.. +..+.+|.+|+.++.+.+.+++|+ .++.|.+|+.++..++++..+.+.++ .++..+..|+..+.|-
T Consensus 141 k~lEe~----~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~ 213 (363)
T PRK14961 141 KTLEEP----PQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGS 213 (363)
T ss_pred HHHhcC----CCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 555442 346777778888888999999998 68999999999999999999888664 3566788889888874
No 100
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.41 E-value=1.1e-13 Score=163.45 Aligned_cols=188 Identities=21% Similarity=0.214 Sum_probs=138.8
Q ss_pred eeeeecCCCCCCCCCCCC--CCCCCC-cccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcCC
Q 001076 644 IGVRFDRSIPEGNNLGGF--CEDDHG-FFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN 720 (1163)
Q Consensus 644 vgV~Fd~~~~~~~~l~~~--c~~~~~-ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~~ 720 (1163)
.||.|-+|+|+|||+... +..-.. |+...+..- .++|.++....++.+|+.+.. ++|+||||||||.++.++
T Consensus 218 ~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL--~~k~~Ge~~~~vr~lF~~A~~---~~P~ILfIDEID~l~~kR 292 (438)
T PTZ00361 218 KGVILYGPPGTGKTLLAKAVANETSATFLRVVGSEL--IQKYLGDGPKLVRELFRVAEE---NAPSIVFIDEIDAIGTKR 292 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchh--hhhhcchHHHHHHHHHHHHHh---CCCcEEeHHHHHHHhccC
Confidence 478888999999998721 111112 332222221 367899999999999987766 899999999999966532
Q ss_pred --------hhhHHHHHHHHhcC-----CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCcccccccc
Q 001076 721 --------NDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRS 787 (1163)
Q Consensus 721 --------~~~~~~i~s~L~~L-----~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~ 787 (1163)
.++...+...|..+ .++|+||++||+++. |||
T Consensus 293 ~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~----------------------LDp------------- 337 (438)
T PTZ00361 293 YDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES----------------------LDP------------- 337 (438)
T ss_pred CCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH----------------------hhH-------------
Confidence 22333444555555 448999999996554 333
Q ss_pred ccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhhhhcCCC-CcccccchhhcccCCc
Q 001076 788 KETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLT 864 (1163)
Q Consensus 788 ~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~s 864 (1163)
|++| ||++.+++++|+..+|..|+++|+. .-.+ .+++++.++..+.+|+
T Consensus 338 --------------------------aLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~--k~~l~~dvdl~~la~~t~g~s 389 (438)
T PTZ00361 338 --------------------------ALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS--KMTLAEDVDLEEFIMAKDELS 389 (438)
T ss_pred --------------------------HhccCCeeEEEEEeCCCCHHHHHHHHHHHHh--cCCCCcCcCHHHHHHhcCCCC
Confidence 7777 9999999999999999999999975 1234 6789999999999999
Q ss_pred hhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhhhhhh
Q 001076 865 TEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSES 914 (1163)
Q Consensus 865 gadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~dF~~al~ei 914 (1163)
|+||+.+|++|+..|+++.. ..++..||..|..++
T Consensus 390 gAdI~~i~~eA~~~Alr~~r---------------~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 390 GADIKAICTEAGLLALRERR---------------MKVTQADFRKAKEKV 424 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcC---------------CccCHHHHHHHHHHH
Confidence 99999999999999997542 135667777776554
No 101
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=4.6e-12 Score=152.81 Aligned_cols=172 Identities=16% Similarity=0.185 Sum_probs=126.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p------------- 1011 (1163)
..+|++++|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~-------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQ-------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 46899999999999999988853 2334568999999999999999999999653
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHhc----cCCeEEEEccccccccCCCCcchHHHHHHHHHHHH
Q 001076 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1163)
Q Consensus 1012 -----------fi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k----~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL 1076 (1163)
++.++.+. ...-..++.+...+.. ....|+||||+|.|. ...++.|+
T Consensus 79 C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls------------~~a~naLL 140 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS------------GHSFNALL 140 (509)
T ss_pred HHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC------------HHHHHHHH
Confidence 44454332 1122235555444332 234699999999883 22345566
Q ss_pred HHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCC
Q 001076 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADG 1152 (1163)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeG 1152 (1163)
..++.. +..+.+|.+|+.+..+.+.+++|+ .++.|..++.++..+.++.++.+.++. ++..+..|++.+.|
T Consensus 141 k~LEep----p~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G 212 (509)
T PRK14958 141 KTLEEP----PSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG 212 (509)
T ss_pred HHHhcc----CCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 666543 356788888888888998999998 688899999999999999999887654 55567888888876
No 102
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.40 E-value=2.8e-12 Score=143.79 Aligned_cols=177 Identities=24% Similarity=0.442 Sum_probs=125.4
Q ss_pred CCCcccccCcHHHHHH---HHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecc
Q 001076 945 GVTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMS 1018 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~---L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p---fi~Id~s 1018 (1163)
..+++|++|++++..+ |+.++. +. ...+++||||||||||+||+.|+....-+ |+.++..
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ie----------q~----~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIE----------QN----RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHH----------cC----CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 4567788888776533 333332 12 23589999999999999999999998665 6666542
Q ss_pred ccccccccchHHHHHHHHHHHhcc-----CCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEE
Q 001076 1019 SITSKWFGEGEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1093 (1163)
Q Consensus 1019 eL~s~~~Ge~E~~Ir~lF~~A~k~-----~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVI 1093 (1163)
. ...+-++.+|+.+++. ...|||||||+++ +..+ ..+|+-.+ ++..|++|
T Consensus 200 ~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF-----NksQ-------QD~fLP~V------E~G~I~lI 254 (554)
T KOG2028|consen 200 N-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF-----NKSQ-------QDTFLPHV------ENGDITLI 254 (554)
T ss_pred c-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh-----hhhh-------hhccccee------ccCceEEE
Confidence 2 3345688999888654 3579999999976 2111 12333222 44678999
Q ss_pred EEe--CCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhh-----C---CC------CChhhHHHHHHHcCCCCHHH
Q 001076 1094 AAT--NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-----E---EL------ASDVDLEGIANMADGYSGSD 1157 (1163)
Q Consensus 1094 aTT--N~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k-----~---~l------~~dvdl~~LA~~TeGySgaD 1157 (1163)
++| |+.+.|..++++|+ +++.+...+.++...|+.+.+.- . ++ .++--++.|+..++|-....
T Consensus 255 GATTENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~a 333 (554)
T KOG2028|consen 255 GATTENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAA 333 (554)
T ss_pred ecccCCCccchhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHH
Confidence 887 77789999999999 78889999999999999886551 1 11 13445788999999887766
Q ss_pred HHhh
Q 001076 1158 LKVD 1161 (1163)
Q Consensus 1158 Lk~L 1161 (1163)
|..|
T Consensus 334 LN~L 337 (554)
T KOG2028|consen 334 LNAL 337 (554)
T ss_pred HHHH
Confidence 6544
No 103
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.2e-11 Score=149.10 Aligned_cols=172 Identities=23% Similarity=0.315 Sum_probs=129.7
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc--------
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-------- 1021 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~-------- 1021 (1163)
|..|++++|+.+.+++.-..+. .. ....=++|+||||+|||+|++.||+.++..|+++....+.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~------~~--~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLT------KK--LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHh------cc--CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 5779999999999998642221 11 1113489999999999999999999999999999976532
Q ss_pred -cccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHH-----HHHHHHhcCCcccCCCCEEEEEE
Q 001076 1022 -SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMK-----NEFMVNWDGLRTKDKERVLVLAA 1095 (1163)
Q Consensus 1022 -s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il-----~~LL~~Ldgl~~k~~~~VlVIaT 1095 (1163)
-.|+|.+.+.+-+-...|....| |++|||||.|... .......++..++ +.|..+.-.+.. +-.+|+||+|
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss-~rGDPaSALLEVLDPEQN~~F~DhYLev~y-DLS~VmFiaT 472 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS-FRGDPASALLEVLDPEQNNTFSDHYLEVPY-DLSKVMFIAT 472 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCC-CCCChHHHHHhhcCHhhcCchhhccccCcc-chhheEEEee
Confidence 34899999999999899988776 7889999999532 2222223333332 123322222222 2368999999
Q ss_pred eCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHh
Q 001076 1096 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA 1133 (1163)
Q Consensus 1096 TN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~ 1133 (1163)
+|..+.++..|+.|. .+|.+.-.+.++..+|.+.|+-
T Consensus 473 ANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 473 ANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred cCccccCChHHhcce-eeeeecCCChHHHHHHHHHhcc
Confidence 999999999999999 7999999999999999999873
No 104
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.39 E-value=5.1e-12 Score=148.21 Aligned_cols=211 Identities=21% Similarity=0.325 Sum_probs=137.0
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhh-hc---CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc-cccc
Q 001076 951 IGALENVKDTLKELVMLPLQRPELF-CK---GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKWF 1025 (1163)
Q Consensus 951 I~Gleevk~~L~e~V~lpl~~pelf-~k---~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~-s~~~ 1025 (1163)
++|++++++.+...+...+.+-... .. .++.....++||+||||+|||++|+++|+.++.+|..+++..+. ..|+
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 6899999999987774332221100 00 01112235799999999999999999999999999999988875 3577
Q ss_pred cch-HHHHHHHHHHH----hccCCeEEEEccccccccCCCCcchH-HH-HHHHHHHHHHHhcCCcc---------cCCCC
Q 001076 1026 GEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEH-EA-MRKMKNEFMVNWDGLRT---------KDKER 1089 (1163)
Q Consensus 1026 Ge~-E~~Ir~lF~~A----~k~~PsILfIDEID~L~g~r~s~~~~-ea-l~~il~~LL~~Ldgl~~---------k~~~~ 1089 (1163)
|.. +..+..++..+ .+..++||||||||.+..++.++... .. ...+.+.|+..|+|... .+..+
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 764 44455554432 23467899999999997543322110 00 01355566666655421 12356
Q ss_pred EEEEEEeCCCC--------------------------------------------------CCCHHHHhccCcEEEecCC
Q 001076 1090 VLVLAATNRPF--------------------------------------------------DLDEAVVRRLPRRLMVNLP 1119 (1163)
Q Consensus 1090 VlVIaTTN~p~--------------------------------------------------~Ld~aLlrRFd~vI~I~~P 1119 (1163)
.++|.|+|..+ -+.|+|+.|++.++.|.+.
T Consensus 239 ~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL 318 (413)
T TIGR00382 239 FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKL 318 (413)
T ss_pred eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCC
Confidence 78888877510 1457888899999999999
Q ss_pred CHHHHHHHHHH----HHhh-------CCCC---ChhhHHHHHHHc--CCCCHHHHHhh
Q 001076 1120 DAPNREKIIRV----ILAK-------EELA---SDVDLEGIANMA--DGYSGSDLKVD 1161 (1163)
Q Consensus 1120 d~eeR~eILk~----ll~k-------~~l~---~dvdl~~LA~~T--eGySgaDLk~L 1161 (1163)
+.++..+|+.. ++++ .++. ++..++.||+.+ ..|.+.-|+.+
T Consensus 319 ~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~i 376 (413)
T TIGR00382 319 DEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSI 376 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHH
Confidence 99999999876 2332 1222 455577788764 25666666544
No 105
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=9.4e-12 Score=149.60 Aligned_cols=174 Identities=19% Similarity=0.256 Sum_probs=129.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p------------- 1011 (1163)
..+|++++|++.+.+.|...+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~-------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILN-------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 56899999999999999887642 2344689999999999999999999999652
Q ss_pred ---------------EEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEccccccccCCCCcchHHHHHHHH
Q 001076 1012 ---------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMK 1072 (1163)
Q Consensus 1012 ---------------fi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~----~PsILfIDEID~L~g~r~s~~~~eal~~il 1072 (1163)
++.+|... ......++.++..+... ...|+||||+|.|. ...+
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------~~a~ 145 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------KGAF 145 (507)
T ss_pred CChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------------HHHH
Confidence 12222111 12234566777666433 34699999999772 1234
Q ss_pred HHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcC
Q 001076 1073 NEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMAD 1151 (1163)
Q Consensus 1073 ~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~Te 1151 (1163)
+.|+..++. .+..+++|++|+.+..+.+++++|+ .++.|..++.++...+++.++.+.++. ++..+..|+..++
T Consensus 146 naLLk~LEe----pp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~ 220 (507)
T PRK06645 146 NALLKTLEE----PPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSE 220 (507)
T ss_pred HHHHHHHhh----cCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 555555553 2356788888888888999999999 689999999999999999999887754 5566788998888
Q ss_pred CCC
Q 001076 1152 GYS 1154 (1163)
Q Consensus 1152 GyS 1154 (1163)
|.-
T Consensus 221 Gsl 223 (507)
T PRK06645 221 GSA 223 (507)
T ss_pred CCH
Confidence 743
No 106
>PLN03025 replication factor C subunit; Provisional
Probab=99.38 E-value=9e-12 Score=142.08 Aligned_cols=171 Identities=23% Similarity=0.258 Sum_probs=119.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEeccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 1019 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg-----~pfi~Id~se 1019 (1163)
..+|++++|++++.+.|..++.. . ...++||+||||+|||++|+++|+++. ..++.++.++
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~----------~----~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD----------G----NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc----------C----CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 56899999999999998877642 1 124799999999999999999999982 2356666554
Q ss_pred cccccccchHHHHHHHHHH-Hh------ccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEE
Q 001076 1020 ITSKWFGEGEKYVKAVFSL-AS------KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1163)
Q Consensus 1020 L~s~~~Ge~E~~Ir~lF~~-A~------k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlV 1092 (1163)
..+ ...++..... +. .....||+|||+|.|. ...+.++ +..++.. .....+
T Consensus 75 ~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-----~~aq~aL-------~~~lE~~----~~~t~~ 132 (319)
T PLN03025 75 DRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-----SGAQQAL-------RRTMEIY----SNTTRF 132 (319)
T ss_pred ccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC-----HHHHHHH-------HHHHhcc----cCCceE
Confidence 321 1123332221 11 1235799999999883 1222232 2223221 133567
Q ss_pred EEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCC
Q 001076 1093 LAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADG 1152 (1163)
Q Consensus 1093 IaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeG 1152 (1163)
|.++|....+.+++++|+ .++.|..|+.++....++..+.+.++. ++..+..|+..+.|
T Consensus 133 il~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g 192 (319)
T PLN03025 133 ALACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG 192 (319)
T ss_pred EEEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 778888888999999998 689999999999999999999887654 55667888877765
No 107
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=9.7e-12 Score=148.59 Aligned_cols=173 Identities=20% Similarity=0.253 Sum_probs=130.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~-------------- 1010 (1163)
..+|++++|++.+.+.|...+.. .+.+..+||+||+|+|||++|+.+|+.+++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~-------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL-------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 46899999999999999877642 234568999999999999999999997643
Q ss_pred ----------cEEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEccccccccCCCCcchHHHHHHHHHHHH
Q 001076 1011 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1163)
Q Consensus 1011 ----------pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~----~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL 1076 (1163)
.++.+|.++- ..-..++.+...+... ...|+||||+|.|. ...++.|+
T Consensus 76 C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------~~A~NaLL 137 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------NSAFNALL 137 (491)
T ss_pred HHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC------------HHHHHHHH
Confidence 3455554321 1223466666555432 34699999999872 23455666
Q ss_pred HHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCC
Q 001076 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1153 (1163)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGy 1153 (1163)
..++.. +..+.+|++|+.+..+.+.+++|+ .++.|..++.++..+.++.++.+.++. ++..+..|++.++|-
T Consensus 138 K~LEeP----p~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~Gs 210 (491)
T PRK14964 138 KTLEEP----APHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGS 210 (491)
T ss_pred HHHhCC----CCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 666553 356788888888888999999999 689999999999999999999887654 666788899998763
No 108
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=1.2e-11 Score=151.32 Aligned_cols=174 Identities=22% Similarity=0.286 Sum_probs=128.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p------------- 1011 (1163)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~-------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDE-------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 46899999999999999988753 2345679999999999999999999998653
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHhc----cCCeEEEEccccccccCCCCcchHHHHHHHHHHHH
Q 001076 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1163)
Q Consensus 1012 -----------fi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k----~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL 1076 (1163)
++.++... ......++.++..+.. ....||||||+|.|- ...++.|+
T Consensus 79 Cr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------~~A~NALL 140 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------KSAFNAML 140 (709)
T ss_pred HHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC------------HHHHHHHH
Confidence 12222111 1222356666654432 234799999999772 22345566
Q ss_pred HHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCC
Q 001076 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1154 (1163)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGyS 1154 (1163)
..|+.. ...+.+|++|+.+..+...+++|+ ..|.|..++.++...+++.++.+.++. ++..+..|++.+.|--
T Consensus 141 KtLEEP----p~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~Gsl 214 (709)
T PRK08691 141 KTLEEP----PEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSM 214 (709)
T ss_pred HHHHhC----CCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCH
Confidence 666542 356788888888999999999998 678899999999999999999887764 5566888888887643
No 109
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.3e-11 Score=150.33 Aligned_cols=176 Identities=21% Similarity=0.255 Sum_probs=127.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p------------- 1011 (1163)
..+|++|+|++.+++.|..++.. .+-+..+||+||+|+|||++|+.+|+.+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~-------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQE-------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 46899999999999999988752 1223579999999999999999999999753
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHH----hccCCeEEEEccccccccCCCCcchHHHHHHHHHHHH
Q 001076 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1163)
Q Consensus 1012 -----------fi~Id~seL~s~~~Ge~E~~Ir~lF~~A----~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL 1076 (1163)
++.++...- ..-..++.+...+ ......||||||+|.|- ....+.|+
T Consensus 79 C~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------~~a~naLL 140 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------REAFNALL 140 (624)
T ss_pred HHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC------------HHHHHHHH
Confidence 333432210 0112233332222 22345799999999882 22345566
Q ss_pred HHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCC-CChhhHHHHHHHcCCCCH
Q 001076 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSG 1155 (1163)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l-~~dvdl~~LA~~TeGySg 1155 (1163)
..++.. ...+++|++|+.+..+.+.+++|+ .++.|..++.++..++++.++.+.++ .++..+..|++.+.|--.
T Consensus 141 k~LEEP----~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR 215 (624)
T PRK14959 141 KTLEEP----PARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVR 215 (624)
T ss_pred HHhhcc----CCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 665542 246888888888888989999998 57899999999999999998887765 466678889998887554
Q ss_pred H
Q 001076 1156 S 1156 (1163)
Q Consensus 1156 a 1156 (1163)
.
T Consensus 216 ~ 216 (624)
T PRK14959 216 D 216 (624)
T ss_pred H
Confidence 3
No 110
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=1.4e-11 Score=155.14 Aligned_cols=172 Identities=18% Similarity=0.179 Sum_probs=123.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p------------- 1011 (1163)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+.||+.+.+.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~-------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS-------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 46899999999999999888752 2333568999999999999999999999642
Q ss_pred -------------EEEEeccccccccccchHHHHHHHHHH----HhccCCeEEEEccccccccCCCCcchHHHHHHHHHH
Q 001076 1012 -------------FINISMSSITSKWFGEGEKYVKAVFSL----ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1074 (1163)
Q Consensus 1012 -------------fi~Id~seL~s~~~Ge~E~~Ir~lF~~----A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~ 1074 (1163)
|+.++.... ..-..++.+-.. .......|+||||+|.|. ....|.
T Consensus 78 C~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt------------~~a~Na 139 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT------------PQGFNA 139 (824)
T ss_pred HHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC------------HHHHHH
Confidence 233332111 011223333222 233456799999999883 234556
Q ss_pred HHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCC
Q 001076 1075 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADG 1152 (1163)
Q Consensus 1075 LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeG 1152 (1163)
|+..|+.. ...++||++|+.++.|.+.+++|+ .++.|..++.++..++|+.++.+.++. ++..+..|+..+.|
T Consensus 140 LLK~LEEp----P~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG 213 (824)
T PRK07764 140 LLKIVEEP----PEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG 213 (824)
T ss_pred HHHHHhCC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 66666553 356888888888888999999998 789999999999999999999877664 44456667777665
No 111
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.2e-13 Score=157.11 Aligned_cols=201 Identities=18% Similarity=0.190 Sum_probs=138.2
Q ss_pred eeecCCCCCCCCCC--CCCCCCCC-ccccc-ccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcCC-
Q 001076 646 VRFDRSIPEGNNLG--GFCEDDHG-FFCTA-SSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN- 720 (1163)
Q Consensus 646 V~Fd~~~~~~~~l~--~~c~~~~~-ff~~~-~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~~- 720 (1163)
.+.-+|+++|+++- .-|++... ||--. ..+ .++|+|+.+-.++.||+|+-. .||+|||+||||.+|..+
T Consensus 189 lLLfGPpgtGKtmL~~aiAsE~~atff~iSassL---tsK~~Ge~eK~vralf~vAr~---~qPsvifidEidslls~Rs 262 (428)
T KOG0740|consen 189 LLLFGPPGTGKTMLAKAIATESGATFFNISASSL---TSKYVGESEKLVRALFKVARS---LQPSVIFIDEIDSLLSKRS 262 (428)
T ss_pred hheecCCCCchHHHHHHHHhhhcceEeeccHHHh---hhhccChHHHHHHHHHHHHHh---cCCeEEEechhHHHHhhcC
Confidence 33335889999987 45555555 55433 344 599999999999999999988 999999999999999832
Q ss_pred h-hhHHHHHHHHhcC----------CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCcccccccccc
Q 001076 721 N-DAYGALKSKLENL----------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKE 789 (1163)
Q Consensus 721 ~-~~~~~i~s~L~~L----------~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~ 789 (1163)
+ +...+-+.+.+.| ..+|+|||+||+ |+++|
T Consensus 263 ~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~------------------------------P~e~D-------- 304 (428)
T KOG0740|consen 263 DNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNR------------------------------PWELD-------- 304 (428)
T ss_pred CcccccchhhhhHHHhhhccccCCCCCeEEEEecCCC------------------------------chHHH--------
Confidence 1 1111112222222 349999999993 44444
Q ss_pred chHHHHHhhhccccceeecCCchhHHHHHHHHHHHHhhhhhhccchhhHHHhhhhcCCCCcccccchhhcccCCchhhhh
Q 001076 790 TPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVE 869 (1163)
Q Consensus 790 ~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~LpdlkgR~~Il~IHT~l~~~~L~~vdLeeLa~~tkg~sgadIe 869 (1163)
+|.+|||.+-+|+++||..+|..+++---....+.+.+.+++.|+..|.||+|.||.
T Consensus 305 -----------------------ea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~ 361 (428)
T KOG0740|consen 305 -----------------------EAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDIT 361 (428)
T ss_pred -----------------------HHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHH
Confidence 488889999999999999998876543222224566889999999999999999999
Q ss_pred hHHhHHhhhhhhhcCCCCCCCCcccccccch-hhhHHHHHhhhhhhhh
Q 001076 870 KIVGWALSHHFMHCSEAPGKDAKLKISTESI-MYGLNILQGIQSESKS 916 (1163)
Q Consensus 870 ~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI-~v~~~dF~~al~eikp 916 (1163)
.+|.+|+..-+..... + .....++.+.+ .+...+|..+...+++
T Consensus 362 ~l~kea~~~p~r~~~~--~-~~~~~~~~~~~r~i~~~df~~a~~~i~~ 406 (428)
T KOG0740|consen 362 ALCKEAAMGPLRELGG--T-TDLEFIDADKIRPITYPDFKNAFKNIKP 406 (428)
T ss_pred HHHHHhhcCchhhccc--c-hhhhhcchhccCCCCcchHHHHHHhhcc
Confidence 9999999876543321 0 01222333322 2244566666555544
No 112
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.36 E-value=2e-11 Score=133.26 Aligned_cols=182 Identities=26% Similarity=0.348 Sum_probs=132.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~ 1021 (1163)
.+.+++++|.+.+++.|.+-....+. ..|..++||+|++|||||++++++.++. |..+|.+.-.+|.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~----------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQ----------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHc----------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 46789999999999999887754332 3477899999999999999999999887 7778887755543
Q ss_pred cccccchHHHHHHHHHHHhc-cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCC
Q 001076 1022 SKWFGEGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1163)
Q Consensus 1022 s~~~Ge~E~~Ir~lF~~A~k-~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1163)
.+..++...+. ..+-|||+|++- | .... .-...|...|+|.....+.+|+|.||+|+.+
T Consensus 93 ---------~l~~l~~~l~~~~~kFIlf~DDLs--F----e~~d-----~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 93 ---------DLPELLDLLRDRPYKFILFCDDLS--F----EEGD-----TEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred ---------cHHHHHHHHhcCCCCEEEEecCCC--C----CCCc-----HHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 34455555543 346899999974 2 1111 1235667778887777789999999999733
Q ss_pred CCCH-----------------------HHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCCCh-hhHHHHH----HHcCC
Q 001076 1101 DLDE-----------------------AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASD-VDLEGIA----NMADG 1152 (1163)
Q Consensus 1101 ~Ld~-----------------------aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~d-vdl~~LA----~~TeG 1152 (1163)
.+.+ .|..||+.++.|..|+.++-.+|++.++.+.++.-+ ..+..-| ..-.|
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~ 232 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGG 232 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCC
Confidence 2221 344499999999999999999999999988776533 3333333 33346
Q ss_pred CCHH
Q 001076 1153 YSGS 1156 (1163)
Q Consensus 1153 ySga 1156 (1163)
.||.
T Consensus 233 RSGR 236 (249)
T PF05673_consen 233 RSGR 236 (249)
T ss_pred CCHH
Confidence 7775
No 113
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.36 E-value=2.3e-11 Score=137.71 Aligned_cols=158 Identities=20% Similarity=0.254 Sum_probs=109.1
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 001076 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1163)
Q Consensus 944 ~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~ 1023 (1163)
...+|++++|++++++.+...+.. .+.+..+||+||||+|||++|++++++++.+++.+++.+ ..
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~ 80 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKK-------------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR 80 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhc-------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc
Confidence 356899999999999999888742 223345677999999999999999999999999998876 21
Q ss_pred cccchHHHHHHHHHHHh-ccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCC
Q 001076 1024 WFGEGEKYVKAVFSLAS-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1102 (1163)
Q Consensus 1024 ~~Ge~E~~Ir~lF~~A~-k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~L 1102 (1163)
.......+........ ...+.||||||+|.+. .. . ....+..+ ++.. ..++.+|+|+|.+..+
T Consensus 81 -~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~----~~---~-~~~~L~~~---le~~----~~~~~~Ilt~n~~~~l 144 (316)
T PHA02544 81 -IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG----LA---D-AQRHLRSF---MEAY----SKNCSFIITANNKNGI 144 (316)
T ss_pred -HHHHHHHHHHHHHhhcccCCCeEEEEECccccc----CH---H-HHHHHHHH---HHhc----CCCceEEEEcCChhhc
Confidence 1111111222111111 1246899999999772 11 1 11222222 3322 2456888899999999
Q ss_pred CHHHHhccCcEEEecCCCHHHHHHHHHHHHh
Q 001076 1103 DEAVVRRLPRRLMVNLPDAPNREKIIRVILA 1133 (1163)
Q Consensus 1103 d~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~ 1133 (1163)
.+++++|| ..+.++.|+.+++..+++.++.
T Consensus 145 ~~~l~sR~-~~i~~~~p~~~~~~~il~~~~~ 174 (316)
T PHA02544 145 IEPLRSRC-RVIDFGVPTKEEQIEMMKQMIV 174 (316)
T ss_pred hHHHHhhc-eEEEeCCCCHHHHHHHHHHHHH
Confidence 99999999 5889999999999887765443
No 114
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.7e-11 Score=149.94 Aligned_cols=172 Identities=19% Similarity=0.258 Sum_probs=126.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p------------- 1011 (1163)
..+|++++|++.+++.|..++.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~-------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQ-------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 46899999999999999988753 2234568999999999999999999998652
Q ss_pred ----------------EEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEccccccccCCCCcchHHHHHHH
Q 001076 1012 ----------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKM 1071 (1163)
Q Consensus 1012 ----------------fi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~----~PsILfIDEID~L~g~r~s~~~~eal~~i 1071 (1163)
|+.++... ...-..++.+...+... ...|+||||+|.|. ...
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------~~a 140 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------NTA 140 (618)
T ss_pred CccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC------------HHH
Confidence 22332211 11123455555554332 24699999999883 223
Q ss_pred HHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHc
Q 001076 1072 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 1150 (1163)
Q Consensus 1072 l~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~T 1150 (1163)
+|.|+..++. .+..+.+|.+|+.+..+...+++|+ .++.|..++.++..+.++.++.+.++. ++..+..|++.+
T Consensus 141 ~NaLLKtLEE----PP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 141 FNAMLKTLEE----PPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred HHHHHHhccc----CCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 5566665554 2356778888888888888999998 789999999999999999998887765 455678888888
Q ss_pred CC
Q 001076 1151 DG 1152 (1163)
Q Consensus 1151 eG 1152 (1163)
+|
T Consensus 216 ~G 217 (618)
T PRK14951 216 RG 217 (618)
T ss_pred CC
Confidence 87
No 115
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=2.4e-11 Score=146.43 Aligned_cols=175 Identities=22% Similarity=0.284 Sum_probs=126.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p------------- 1011 (1163)
..+|++++|++.+++.|..++.. .+.+..+||+||||+|||++|+++|+.+.+.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~-------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQ-------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 46899999999999999988753 2233457999999999999999999998531
Q ss_pred ----------EEEEeccccccccccchHHHHHHHHHHHhc----cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHH
Q 001076 1012 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1077 (1163)
Q Consensus 1012 ----------fi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k----~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~ 1077 (1163)
++.++... ...-..++.+...+.. ..+.||||||+|.+. ...++.|+.
T Consensus 77 ~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~a~naLLk 138 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------KSAFNALLK 138 (504)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC------------HHHHHHHHH
Confidence 33444321 1112334554443332 245799999999762 233455555
Q ss_pred HhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCH
Q 001076 1078 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1163)
Q Consensus 1078 ~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySg 1155 (1163)
.++.. ...+++|.+++.+..+.+.+.+|+ .++.|..|+.++...+++.++.+.++. ++..+..|+..+.|--.
T Consensus 139 ~LEep----~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR 212 (504)
T PRK14963 139 TLEEP----PEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMR 212 (504)
T ss_pred HHHhC----CCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 55442 246788888888899999999998 589999999999999999999887764 55668888888887544
No 116
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=8.1e-12 Score=149.49 Aligned_cols=173 Identities=23% Similarity=0.371 Sum_probs=128.4
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc-------
Q 001076 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT------- 1021 (1163)
Q Consensus 949 ddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~------- 1021 (1163)
+|..|++++|+.+.+++.--..+ + ....+-+.|+||||+|||.+|+.||..+|..|++++...+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr------g--s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR------G--SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc------c--cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 36789999999999998632111 1 11224489999999999999999999999999999875533
Q ss_pred --cccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchH-HHHHHHH-----HHHHHHhcCCcccCCCCEEEE
Q 001076 1022 --SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH-EAMRKMK-----NEFMVNWDGLRTKDKERVLVL 1093 (1163)
Q Consensus 1022 --s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~-eal~~il-----~~LL~~Ldgl~~k~~~~VlVI 1093 (1163)
..|+|.+.+.+.+....+.-..| +++|||||.+. ++.++.. .++..++ ..|+.+.-.++. +-.+|++|
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG--~g~qGDPasALLElLDPEQNanFlDHYLdVp~-DLSkVLFi 558 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLG--SGHQGDPASALLELLDPEQNANFLDHYLDVPV-DLSKVLFI 558 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhC--CCCCCChHHHHHHhcChhhccchhhhcccccc-chhheEEE
Confidence 34889998888888887777666 78899999996 2222222 2222221 122322222222 23689999
Q ss_pred EEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhh
Q 001076 1094 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1134 (1163)
Q Consensus 1094 aTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k 1134 (1163)
+|+|..+.+++.++.|. .+|.+.-...++..+|.+.|+-.
T Consensus 559 cTAN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 559 CTANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred EeccccccCChhhhhhh-heeeccCccHHHHHHHHHHhhhh
Confidence 99999999999999999 79999999999999999998843
No 117
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=2.9e-11 Score=147.48 Aligned_cols=173 Identities=18% Similarity=0.210 Sum_probs=125.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p------------- 1011 (1163)
..+|++|+|++.+++.|..++.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~-------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDA-------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 46899999999999999998852 2333558999999999999999999998642
Q ss_pred -------------EEEEeccccccccccchHHHHHHHHHHHh----ccCCeEEEEccccccccCCCCcchHHHHHHHHHH
Q 001076 1012 -------------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1074 (1163)
Q Consensus 1012 -------------fi~Id~seL~s~~~Ge~E~~Ir~lF~~A~----k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~ 1074 (1163)
++.++.+.. ..-..++.+...+. .....|+||||+|.|- ...++.
T Consensus 76 C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt------------~~A~NA 137 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT------------TAGFNA 137 (584)
T ss_pred HHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC------------HHHHHH
Confidence 222332211 01223444433332 2335699999999882 224566
Q ss_pred HHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCC
Q 001076 1075 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1153 (1163)
Q Consensus 1075 LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGy 1153 (1163)
|+..|+.. +..+++|++|+.+..|.+++++|+ .++.|..++.++..++++.++.+.++. ++..+..|++.+.|-
T Consensus 138 LLK~LEEp----p~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~Gd 212 (584)
T PRK14952 138 LLKIVEEP----PEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGS 212 (584)
T ss_pred HHHHHhcC----CCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 66666542 357888888888899999999997 789999999999999999999887653 555677777777763
No 118
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=3e-11 Score=146.25 Aligned_cols=174 Identities=22% Similarity=0.278 Sum_probs=124.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~-------------- 1010 (1163)
..+|++++|++.+++.|...+.. .+.+..+||+||+|+|||++|+.+|+.+.+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~-------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALET-------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 46799999999999999887752 223456899999999999999999998864
Q ss_pred ----------cEEEEeccccccccccchHHHHHHHHHHHhc----cCCeEEEEccccccccCCCCcchHHHHHHHHHHHH
Q 001076 1011 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1163)
Q Consensus 1011 ----------pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k----~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL 1076 (1163)
.++.++...- .| -..++.+...+.. ....|+||||+|.|- ....+.|+
T Consensus 79 C~~i~~~~~~dlieidaas~----~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls------------~~a~naLL 140 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAASR----TG--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLS------------KQSFNALL 140 (546)
T ss_pred HHHHhcCCCCceEEeecccc----cC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhcc------------HHHHHHHH
Confidence 2333332111 11 1234444444332 245699999999872 22445566
Q ss_pred HHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCC
Q 001076 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1154 (1163)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGyS 1154 (1163)
..++.. +..+.+|++|+.+..+.+.+++|+ .++.|..++.++..+.++.++.+.++. ++..+..|+..+.|--
T Consensus 141 K~LEep----p~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~Gdl 214 (546)
T PRK14957 141 KTLEEP----PEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSL 214 (546)
T ss_pred HHHhcC----CCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 665542 355777777777888888899999 799999999999999999988877654 5566788888887633
No 119
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=1.8e-11 Score=148.49 Aligned_cols=175 Identities=21% Similarity=0.269 Sum_probs=127.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p------------- 1011 (1163)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+.+|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~-------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQ-------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 35899999999999999888752 2334568999999999999999999999652
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEccccccccCCCCcchHHHHHHHHHHHH
Q 001076 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1163)
Q Consensus 1012 -----------fi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~----~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL 1076 (1163)
++.++.+. ......++.+...+... ...|+||||+|.|. ....|.|+
T Consensus 79 C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------~~a~naLL 140 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------KSAFNAML 140 (527)
T ss_pred HHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC------------HHHHHHHH
Confidence 22222211 11223466666655432 34699999999873 22345666
Q ss_pred HHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCH
Q 001076 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1163)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySg 1155 (1163)
..++.. +..+.+|.+|+.+..+.+.+++|+ .++.|..++.++..+.+..++.+.++. ++..+..|++.+.|--+
T Consensus 141 K~LEep----p~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 141 KTLEEP----PEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMR 215 (527)
T ss_pred HHHhCC----CCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 666552 356778888888888888899998 789999999999999999988876654 45567888888877444
No 120
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=2.8e-11 Score=147.68 Aligned_cols=172 Identities=26% Similarity=0.351 Sum_probs=128.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~-------------- 1010 (1163)
..+|++++|++.+.+.|...+.. .+.++.+||+||+|||||++|+.+|+.+.+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ-------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 46899999999999999988753 233456899999999999999999999853
Q ss_pred ----------cEEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEccccccccCCCCcchHHHHHHHHHHHH
Q 001076 1011 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1163)
Q Consensus 1011 ----------pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~----~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL 1076 (1163)
+++.++.+. ...-..++.+...+... ...|+||||+|.|. ...++.|+
T Consensus 79 C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------~~a~naLL 140 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------TGAFNALL 140 (559)
T ss_pred HHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHH
Confidence 344444321 12234566666665432 34699999999883 22455666
Q ss_pred HHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCC
Q 001076 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADG 1152 (1163)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeG 1152 (1163)
..++.. +..+++|.+|+.+..+.+.+++|+ .++.|..|+.++...+++.++.+.++. ++..+..|+..+.|
T Consensus 141 KtLEep----p~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G 212 (559)
T PRK05563 141 KTLEEP----PAHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG 212 (559)
T ss_pred HHhcCC----CCCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 666542 356777777888899999999998 578999999999999999999887654 55667888888877
No 121
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.32 E-value=5.2e-11 Score=135.42 Aligned_cols=177 Identities=21% Similarity=0.282 Sum_probs=118.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEeccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 1019 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg-----~pfi~Id~se 1019 (1163)
..+|++++|++.+++.|..++.. . . ..++||+||||||||++|+++++++. .+++.+++.+
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~----------~---~-~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDS----------P---N-LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhC----------C---C-CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 45789999999999999887742 1 1 23799999999999999999999983 3577888776
Q ss_pred ccccc-------------ccc-------hHHHHHHHHHHHhc-----cCCeEEEEccccccccCCCCcchHHHHHHHHHH
Q 001076 1020 ITSKW-------------FGE-------GEKYVKAVFSLASK-----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1074 (1163)
Q Consensus 1020 L~s~~-------------~Ge-------~E~~Ir~lF~~A~k-----~~PsILfIDEID~L~g~r~s~~~~eal~~il~~ 1074 (1163)
+...+ .+. ....++.+...... ..+.+|||||+|.+. ... .+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-----~~~-------~~~ 144 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-----EDA-------QQA 144 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-----HHH-------HHH
Confidence 53221 010 01223333322222 234699999999772 111 122
Q ss_pred HHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCC
Q 001076 1075 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADG 1152 (1163)
Q Consensus 1075 LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeG 1152 (1163)
|...++... ....+|.+++.+..+.+.+.+|+ ..+.+.+|+.++..++++.++.+.++. ++..++.|+..+.|
T Consensus 145 L~~~le~~~----~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g 218 (337)
T PRK12402 145 LRRIMEQYS----RTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG 218 (337)
T ss_pred HHHHHHhcc----CCCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 333333221 23455666666667778888897 678999999999999999998876654 55667777777744
No 122
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=3.5e-11 Score=146.03 Aligned_cols=175 Identities=20% Similarity=0.314 Sum_probs=126.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~-------------- 1010 (1163)
..+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~-------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN-------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 46899999999999999887742 233467999999999999999999999853
Q ss_pred ----------cEEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEccccccccCCCCcchHHHHHHHHHHHH
Q 001076 1011 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1163)
Q Consensus 1011 ----------pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~----~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL 1076 (1163)
.++.++... ...-..++.+...+... ...|++|||+|.|- ....+.|+
T Consensus 79 Cr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt------------~~A~NaLL 140 (605)
T PRK05896 79 CESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS------------TSAWNALL 140 (605)
T ss_pred HHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC------------HHHHHHHH
Confidence 223333211 01123456665554433 34699999999872 11335566
Q ss_pred HHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCC-CChhhHHHHHHHcCCCCH
Q 001076 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSG 1155 (1163)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l-~~dvdl~~LA~~TeGySg 1155 (1163)
..++.. +..+++|++|+.+..+.+++++|+ .++.|..|+.++...+++..+.+.++ .++..+..|+.++.|--+
T Consensus 141 KtLEEP----p~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR 215 (605)
T PRK05896 141 KTLEEP----PKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLR 215 (605)
T ss_pred HHHHhC----CCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHH
Confidence 555542 346778888888899999999998 58999999999999999998887664 355667888888887443
No 123
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.31 E-value=1.6e-11 Score=136.12 Aligned_cols=176 Identities=24% Similarity=0.337 Sum_probs=124.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------EEEEecc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------FINISMS 1018 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p------fi~Id~s 1018 (1163)
..+|+++.|++.+.+.|...+.. +...++|||||||||||+.|+++|.++..+ +...+.+
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 56899999999999999988742 123589999999999999999999999652 2333444
Q ss_pred ccccccccchHHHHHHHHHHHh---------ccCC-eEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCC
Q 001076 1019 SITSKWFGEGEKYVKAVFSLAS---------KIAP-SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1088 (1163)
Q Consensus 1019 eL~s~~~Ge~E~~Ir~lF~~A~---------k~~P-sILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~ 1088 (1163)
+..+..++. ..++ -|.... -.+| -||+|||.|.|. ...+.++++++ +.. ..
T Consensus 98 derGisvvr--~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-----sdaq~aLrr~m-------E~~----s~ 158 (346)
T KOG0989|consen 98 DERGISVVR--EKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-----SDAQAALRRTM-------EDF----SR 158 (346)
T ss_pred ccccccchh--hhhc-CHHHHhhccccccCCCCCcceEEEEechhhhh-----HHHHHHHHHHH-------hcc----cc
Confidence 443332221 1111 121111 1123 699999999883 33344444444 332 25
Q ss_pred CEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCC
Q 001076 1089 RVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1154 (1163)
Q Consensus 1089 ~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGyS 1154 (1163)
.+++|..||..+.|...+.+|+ ..+.|+....+.....|+.+..++++. ++..++.|+..++|--
T Consensus 159 ~trFiLIcnylsrii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 159 TTRFILICNYLSRIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDL 224 (346)
T ss_pred ceEEEEEcCChhhCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcH
Confidence 6899999999999999999998 467788888888888899999888876 5556788888877643
No 124
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.31 E-value=1.2e-12 Score=149.31 Aligned_cols=169 Identities=11% Similarity=0.058 Sum_probs=118.7
Q ss_pred eeeeecCCCCCCCCCCC--CCCC-CCCcc-cccccccccCCCcchhhHHHHHHHHHHHHhhc--cCCCeEEEEcchhhhh
Q 001076 644 IGVRFDRSIPEGNNLGG--FCED-DHGFF-CTASSLRLDSSLGDEVDKLAINELFEVALNES--KSSPLIVFVKDIEKSL 717 (1163)
Q Consensus 644 vgV~Fd~~~~~~~~l~~--~c~~-~~~ff-~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~--k~~P~IIffddid~~L 717 (1163)
-|+.+.+|++.||++.. .|.. +..|+ +..+++ .|+|+||.++.|+.+|+.+...+ +.+|.||||||||.++
T Consensus 149 lgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL---~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~ 225 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGEL---ESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGA 225 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHh---hcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcC
Confidence 46778889999999981 1221 22333 344555 69999999999999999998765 5789999999999955
Q ss_pred cC----ChhhHHHHH-HHHhcC------------------CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccc
Q 001076 718 TG----NNDAYGALK-SKLENL------------------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDL 774 (1163)
Q Consensus 718 a~----~~~~~~~i~-s~L~~L------------------~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp 774 (1163)
.+ +....+.++ .+|..+ .+.|+||+++|+++. |||
T Consensus 226 g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~----------------------LDp 283 (413)
T PLN00020 226 GRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFST----------------------LYA 283 (413)
T ss_pred CCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCccc----------------------CCH
Confidence 53 223335555 566543 346999999996554 444
Q ss_pred cCCCCccccccccccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhhhhcCCCCccc
Q 001076 775 AFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVD 852 (1163)
Q Consensus 775 ~~pd~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~l~~~~L~~vd 852 (1163)
||+| ||++.+ .+|+.++|.+|+++|++. .+++..+
T Consensus 284 ---------------------------------------ALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~--~~l~~~d 320 (413)
T PLN00020 284 ---------------------------------------PLIRDGRMEKFY--WAPTREDRIGVVHGIFRD--DGVSRED 320 (413)
T ss_pred ---------------------------------------hHcCCCCCCcee--CCCCHHHHHHHHHHHhcc--CCCCHHH
Confidence 8999 999965 489999999999999764 3566778
Q ss_pred ccchhhcccC----CchhhhhhHHhHHhhhhh
Q 001076 853 LESLCIKDQT----LTTEGVEKIVGWALSHHF 880 (1163)
Q Consensus 853 LeeLa~~tkg----~sgadIe~Lv~~Aas~Al 880 (1163)
+..|+....| |.||--..+...++...+
T Consensus 321 v~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i 352 (413)
T PLN00020 321 VVKLVDTFPGQPLDFFGALRARVYDDEVRKWI 352 (413)
T ss_pred HHHHHHcCCCCCchhhhHHHHHHHHHHHHHHH
Confidence 8888776544 334433444444444433
No 125
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.30 E-value=6e-11 Score=136.16 Aligned_cols=173 Identities=26% Similarity=0.364 Sum_probs=125.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p------------- 1011 (1163)
..+|++++|++++++.|.+.+.. .+.++.+||+||||+|||++|+++|+.+...
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~-------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKN-------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 46789999999999999987742 2234579999999999999999999997432
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEccccccccCCCCcchHHHHHHHHHHHH
Q 001076 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1163)
Q Consensus 1012 -----------fi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~----~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL 1076 (1163)
++.++... ......++.++..+... ...||+|||+|.+. ....+.++
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------~~~~~~Ll 138 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------KSAFNALL 138 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC------------HHHHHHHH
Confidence 33333221 11223466677666543 23599999999772 12345566
Q ss_pred HHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCC
Q 001076 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1153 (1163)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGy 1153 (1163)
..++.. +..+++|++|+.+..+.+++++|+ ..+.+..|+.++..++++.++.+.++. ++..+..|+..+.|-
T Consensus 139 ~~le~~----~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~ 211 (355)
T TIGR02397 139 KTLEEP----PEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGS 211 (355)
T ss_pred HHHhCC----ccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 666542 246777888888888889999998 688999999999999999999877653 456677778877763
No 126
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=4.4e-11 Score=146.51 Aligned_cols=173 Identities=21% Similarity=0.288 Sum_probs=127.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p------------- 1011 (1163)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDT-------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 46899999999999999988752 2334568999999999999999999998642
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEccccccccCCCCcchHHHHHHHHHHHH
Q 001076 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1163)
Q Consensus 1012 -----------fi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~----~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL 1076 (1163)
++.++... ...-..++.+...+... ...|+||||+|.|. ....+.|+
T Consensus 79 c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------------~~a~naLL 140 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------------TNAFNALL 140 (576)
T ss_pred HHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC------------HHHHHHHH
Confidence 33333222 11123455555544322 23599999999872 22345666
Q ss_pred HHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCC
Q 001076 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1153 (1163)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGy 1153 (1163)
..|+. .+..+++|.+|+.++.|.+.+++|+ .++.|..++.++....+..++.+.++. ++..+..|+..+.|-
T Consensus 141 k~LEe----pp~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~ 213 (576)
T PRK14965 141 KTLEE----PPPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGS 213 (576)
T ss_pred HHHHc----CCCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC
Confidence 66654 2356888888888899999999998 689999999999999999988887654 566688888888873
No 127
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.29 E-value=9.3e-13 Score=158.63 Aligned_cols=171 Identities=22% Similarity=0.298 Sum_probs=123.3
Q ss_pred eeeeecCCCCCCCCCCC--CCCCCC-CcccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcCC
Q 001076 644 IGVRFDRSIPEGNNLGG--FCEDDH-GFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN 720 (1163)
Q Consensus 644 vgV~Fd~~~~~~~~l~~--~c~~~~-~ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~~ 720 (1163)
-||.|.+|+++|||+-. .+..-. .|++-..... .+.|.++....++.+|+.+.. +.|.||||||||.+...+
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~--~~~~~g~~~~~l~~~f~~a~~---~~p~Il~iDEid~l~~~r 163 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF--VEMFVGVGASRVRDLFEQAKK---NAPCIIFIDEIDAVGRQR 163 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH--HHHHhcccHHHHHHHHHHHHh---cCCCEEEEechhhhhhcc
Confidence 37899999999999761 121111 2343222222 256777788888888888755 899999999999955422
Q ss_pred h--------hhHHHHHHHHhcC-----CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCcccccccc
Q 001076 721 N--------DAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRS 787 (1163)
Q Consensus 721 ~--------~~~~~i~s~L~~L-----~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~ 787 (1163)
+ .....+...|..+ .++|+|||+||+++. |||
T Consensus 164 ~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~----------------------ld~------------- 208 (495)
T TIGR01241 164 GAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDV----------------------LDP------------- 208 (495)
T ss_pred ccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhh----------------------cCH-------------
Confidence 1 1112222223333 337999999996554 444
Q ss_pred ccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhhhhcCCC-CcccccchhhcccCCc
Q 001076 788 KETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLT 864 (1163)
Q Consensus 788 ~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~s 864 (1163)
|++| ||++++++++|+.+.|.+|+++|... ..+ .+.++..++..+.||+
T Consensus 209 --------------------------al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~--~~~~~~~~l~~la~~t~G~s 260 (495)
T TIGR01241 209 --------------------------ALLRPGRFDRQVVVDLPDIKGREEILKVHAKN--KKLAPDVDLKAVARRTPGFS 260 (495)
T ss_pred --------------------------HHhcCCcceEEEEcCCCCHHHHHHHHHHHHhc--CCCCcchhHHHHHHhCCCCC
Confidence 7888 99999999999999999999998652 223 6778999999999999
Q ss_pred hhhhhhHHhHHhhhhhhh
Q 001076 865 TEGVEKIVGWALSHHFMH 882 (1163)
Q Consensus 865 gadIe~Lv~~Aas~Al~r 882 (1163)
++||+.+|.+|+..+..+
T Consensus 261 gadl~~l~~eA~~~a~~~ 278 (495)
T TIGR01241 261 GADLANLLNEAALLAARK 278 (495)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999998887653
No 128
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.29 E-value=2.4e-11 Score=153.03 Aligned_cols=165 Identities=19% Similarity=0.318 Sum_probs=119.7
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc--------
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-------- 1021 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~-------- 1021 (1163)
++.|++++|+.+.+++...... . ......++|+||||+|||++++.+|+.++.+|+++++....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~------~--~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV------N--KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc------c--cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 4889999999999888642221 1 11224699999999999999999999999999999876532
Q ss_pred -cccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCc-----------ccCCCC
Q 001076 1022 -SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-----------TKDKER 1089 (1163)
Q Consensus 1022 -s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~-----------~k~~~~ 1089 (1163)
..|.|...+.+.+.+..+....| ||||||||.+...... . ....|+..++... .-+-.+
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g-~-------~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG-D-------PASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC-C-------HHHHHHHHhccccEEEEecccccccccCCc
Confidence 23566666667776766654444 8999999988532111 1 1223333333210 112368
Q ss_pred EEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHh
Q 001076 1090 VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA 1133 (1163)
Q Consensus 1090 VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~ 1133 (1163)
+++|+|+|.. .++++|++|+ .+|.+..++.++..+|++.++-
T Consensus 466 v~~i~TaN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 466 VMFVATSNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred eEEEEcCCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhh
Confidence 9999999887 5999999999 5899999999999999999884
No 129
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=9.7e-11 Score=139.68 Aligned_cols=172 Identities=22% Similarity=0.273 Sum_probs=123.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p------------- 1011 (1163)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~-------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRF-------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA 79 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH
Confidence 46899999999999999888752 2334679999999999999999999988542
Q ss_pred ------------EEEEeccccccccccchHHHHHHHHHHH----hccCCeEEEEccccccccCCCCcchHHHHHHHHHHH
Q 001076 1012 ------------FINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 1075 (1163)
Q Consensus 1012 ------------fi~Id~seL~s~~~Ge~E~~Ir~lF~~A----~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~L 1075 (1163)
++.++.... .| -..++.+.... ......||||||+|.|. ....+.|
T Consensus 80 ~C~~i~~~~~~d~~~i~g~~~----~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt------------~~~~n~L 141 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGASH----RG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLT------------KEAFNSL 141 (451)
T ss_pred HHHHHhcCCCCceEEeecccc----CC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC------------HHHHHHH
Confidence 333332111 11 12233322222 23456899999999873 1234556
Q ss_pred HHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCC
Q 001076 1076 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADG 1152 (1163)
Q Consensus 1076 L~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeG 1152 (1163)
+..++.. +..+++|++|+.+..+.+++++|+ .++.|..++.++..+++...+.+.++. ++..+..|+..+.|
T Consensus 142 Lk~lEep----~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 142 LKTLEEP----PQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred HHHhhcC----CCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 6666542 246777888888889999999999 689999999999999999988876653 55667888888876
No 130
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=8.9e-11 Score=145.02 Aligned_cols=181 Identities=22% Similarity=0.297 Sum_probs=128.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE---ec----
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI---SM---- 1017 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~I---d~---- 1017 (1163)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.-... .|
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~-------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKS-------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 46899999999999999988853 23346689999999999999999999986532100 00
Q ss_pred ------cccc--cccccchHHHHHHHHHHHhcc----CCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCccc
Q 001076 1018 ------SSIT--SKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1085 (1163)
Q Consensus 1018 ------seL~--s~~~Ge~E~~Ir~lF~~A~k~----~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k 1085 (1163)
.++. ..........++.+...+... ...|++|||+|.|. ....+.|+..|+..
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT------------~~A~NALLKtLEEP--- 145 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS------------KSAFNALLKTLEEP--- 145 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC------------HHHHHHHHHHhhcC---
Confidence 0000 000001233467776666543 34699999999873 12455666666552
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCH
Q 001076 1086 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1163)
Q Consensus 1086 ~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySg 1155 (1163)
+..+++|.+|+.++.|.+.+++|+ .++.|.+++.++..++++..+.+.++. ++..+..||..+.|--+
T Consensus 146 -P~~tifILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR 214 (725)
T PRK07133 146 -PKHVIFILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLR 214 (725)
T ss_pred -CCceEEEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 356788888888899999999999 589999999999999999988876654 44457788888877433
No 131
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.28 E-value=3.2e-12 Score=138.41 Aligned_cols=169 Identities=19% Similarity=0.257 Sum_probs=123.5
Q ss_pred eeeecCCCCCCCCCCC--CCCCCCCcccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhc--C-
Q 001076 645 GVRFDRSIPEGNNLGG--FCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT--G- 719 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~~--~c~~~~~ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La--~- 719 (1163)
-|.|.+|+++|+|+++ ......-.|..+.+-.+ +-..+|+.-++|++||+.+.. +.|.|||+||+|. ++ +
T Consensus 153 nVLFyGppGTGKTm~Akalane~kvp~l~vkat~l-iGehVGdgar~Ihely~rA~~---~aPcivFiDE~DA-iaLdRr 227 (368)
T COG1223 153 NVLFYGPPGTGKTMMAKALANEAKVPLLLVKATEL-IGEHVGDGARRIHELYERARK---AAPCIVFIDELDA-IALDRR 227 (368)
T ss_pred eeEEECCCCccHHHHHHHHhcccCCceEEechHHH-HHHHhhhHHHHHHHHHHHHHh---cCCeEEEehhhhh-hhhhhh
Confidence 3899999999999983 22222223433332221 345799999999999998877 9999999999999 66 2
Q ss_pred ----ChhhHHHHHHHHhcCCC-----CEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCccccccccccc
Q 001076 720 ----NNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKET 790 (1163)
Q Consensus 720 ----~~~~~~~i~s~L~~L~g-----~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~ 790 (1163)
+++....+-..|..|.| .|+-|+|||+++- |||
T Consensus 228 yQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~----------------------LD~---------------- 269 (368)
T COG1223 228 YQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPEL----------------------LDP---------------- 269 (368)
T ss_pred HHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhh----------------------cCH----------------
Confidence 55665556666666655 8999999996543 555
Q ss_pred hHHHHHhhhccccceeecCCchhHHHHHHHHHHHHhhhhhhccchhhHHHhhhhcCCC-CcccccchhhcccCCchhhhh
Q 001076 791 PKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVE 869 (1163)
Q Consensus 791 ~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~LpdlkgR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~sgadIe 869 (1163)
|.|.||+.++||.||+.+-|..|+..- ...-++ .+.++..++.+++|++|-||.
T Consensus 270 -----------------------aiRsRFEeEIEF~LP~~eEr~~ile~y--~k~~Plpv~~~~~~~~~~t~g~SgRdik 324 (368)
T COG1223 270 -----------------------AIRSRFEEEIEFKLPNDEERLEILEYY--AKKFPLPVDADLRYLAAKTKGMSGRDIK 324 (368)
T ss_pred -----------------------HHHhhhhheeeeeCCChHHHHHHHHHH--HHhCCCccccCHHHHHHHhCCCCchhHH
Confidence 677788888888888888777776654 233344 777899999999999999998
Q ss_pred h-HHhHHhhhhhh
Q 001076 870 K-IVGWALSHHFM 881 (1163)
Q Consensus 870 ~-Lv~~Aas~Al~ 881 (1163)
. ++..|...|+.
T Consensus 325 ekvlK~aLh~Ai~ 337 (368)
T COG1223 325 EKVLKTALHRAIA 337 (368)
T ss_pred HHHHHHHHHHHHH
Confidence 6 45555555554
No 132
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.27 E-value=2.9e-11 Score=144.13 Aligned_cols=155 Identities=20% Similarity=0.317 Sum_probs=105.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCC
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1059 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL-----g~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r 1059 (1163)
.+++|+||+|+|||+|++++++++ +..++++++.++...+...........|....+ .+.+|+||||+.+.++.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH
Confidence 569999999999999999999998 567888888877654433221111123333333 46899999999885332
Q ss_pred CCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCC---CCHHHHhccC--cEEEecCCCHHHHHHHHHHHHhh
Q 001076 1060 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAK 1134 (1163)
Q Consensus 1060 ~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRFd--~vI~I~~Pd~eeR~eILk~ll~k 1134 (1163)
..++.+..+++.+.. ....+||++...|.. +++.+++||. .++.+..|+.++|.+|++..+..
T Consensus 228 ---~~~~~l~~~~n~l~~---------~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 228 ---RTQEEFFHTFNALHE---------AGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred ---HHHHHHHHHHHHHHH---------CCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 122233333333331 123355555555554 6688999995 48999999999999999999987
Q ss_pred CCCC-ChhhHHHHHHHcCC
Q 001076 1135 EELA-SDVDLEGIANMADG 1152 (1163)
Q Consensus 1135 ~~l~-~dvdl~~LA~~TeG 1152 (1163)
.++. ++..++.||..+.|
T Consensus 296 ~~~~l~~e~l~~ia~~~~~ 314 (450)
T PRK00149 296 EGIDLPDEVLEFIAKNITS 314 (450)
T ss_pred cCCCCCHHHHHHHHcCcCC
Confidence 5543 56668888887765
No 133
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=1.1e-10 Score=142.45 Aligned_cols=173 Identities=20% Similarity=0.235 Sum_probs=125.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p------------- 1011 (1163)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIES-------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 46899999999999999988852 2234569999999999999999999998642
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHh----ccCCeEEEEccccccccCCCCcchHHHHHHHHHHHH
Q 001076 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1163)
Q Consensus 1012 -----------fi~Id~seL~s~~~Ge~E~~Ir~lF~~A~----k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL 1076 (1163)
++.++... ...-..++++...+. .....|++|||+|.|. ....+.|+
T Consensus 79 C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------~~a~naLL 140 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------NSAFNALL 140 (563)
T ss_pred HHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------------HHHHHHHH
Confidence 22222111 011234445443333 2345699999999882 22455666
Q ss_pred HHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCC
Q 001076 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1153 (1163)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGy 1153 (1163)
..++. .+..+++|++|+.+..+.+++++|+ .++.|..++.++..++++..+.+.++. ++..+..|+..+.|-
T Consensus 141 K~LEe----pp~~~vfI~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~Gd 213 (563)
T PRK06647 141 KTIEE----PPPYIVFIFATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGS 213 (563)
T ss_pred Hhhcc----CCCCEEEEEecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 66654 2356788888888888999999999 578999999999999999988776654 566678888888873
No 134
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=1.5e-10 Score=134.35 Aligned_cols=174 Identities=20% Similarity=0.254 Sum_probs=124.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------EEE
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------FIN 1014 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p----------fi~ 1014 (1163)
..+|++++|++.+++.+...+.. .+.++.+|||||||+|||++|+++|+.+..+ +..
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~-------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIEN-------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 46799999999999999888752 2234689999999999999999999988542 222
Q ss_pred EeccccccccccchHHHHHHHHHHHhcc----CCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCE
Q 001076 1015 ISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 1090 (1163)
Q Consensus 1015 Id~seL~s~~~Ge~E~~Ir~lF~~A~k~----~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~V 1090 (1163)
+.... ........++.++..+... .+.||+|||+|.+. ....+.|+..++.. ....
T Consensus 80 ~~l~~----~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~------------~~~~~~ll~~le~~----~~~~ 139 (367)
T PRK14970 80 FELDA----ASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS------------SAAFNAFLKTLEEP----PAHA 139 (367)
T ss_pred EEecc----ccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC------------HHHHHHHHHHHhCC----CCce
Confidence 21111 0112234566777665432 34699999999773 11234555555442 2346
Q ss_pred EEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCC-CChhhHHHHHHHcCC
Q 001076 1091 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADG 1152 (1163)
Q Consensus 1091 lVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l-~~dvdl~~LA~~TeG 1152 (1163)
++|.+++.+..+.+++.+|+ .++.+..|+.++...++...+.+.++ .++..++.|+..+.|
T Consensus 140 ~~Il~~~~~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g 201 (367)
T PRK14970 140 IFILATTEKHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG 201 (367)
T ss_pred EEEEEeCCcccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 66777777888999999998 57899999999999999998888776 356677888887765
No 135
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=1.2e-10 Score=142.65 Aligned_cols=181 Identities=21% Similarity=0.176 Sum_probs=128.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe--------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS-------- 1016 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id-------- 1016 (1163)
..+|++++|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+.....+
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~-------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c 86 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFET-------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC 86 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC
Confidence 46899999999999999887752 234568999999999999999999999965432111
Q ss_pred -----c--------ccccccc--ccchHHHHHHHHHHHhcc----CCeEEEEccccccccCCCCcchHHHHHHHHHHHHH
Q 001076 1017 -----M--------SSITSKW--FGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1077 (1163)
Q Consensus 1017 -----~--------seL~s~~--~Ge~E~~Ir~lF~~A~k~----~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~ 1077 (1163)
| .+++... -...-..|+.+...+... ...||||||+|.|- ....+.|+.
T Consensus 87 g~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls------------~~a~naLLK 154 (598)
T PRK09111 87 GVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS------------TAAFNALLK 154 (598)
T ss_pred cccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC------------HHHHHHHHH
Confidence 0 0110000 001123466666655433 35699999999882 123455666
Q ss_pred HhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCH
Q 001076 1078 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1163)
Q Consensus 1078 ~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySg 1155 (1163)
.++.. ...+.+|++|+....+.+.+++|+ .++.|..++.++...+++..+.+.++. ++..++.|+..+.|.-.
T Consensus 155 tLEeP----p~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr 228 (598)
T PRK09111 155 TLEEP----PPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVR 228 (598)
T ss_pred HHHhC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 55542 245777777887778888999998 689999999999999999999887654 55667888888887543
No 136
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.5e-10 Score=142.71 Aligned_cols=174 Identities=21% Similarity=0.256 Sum_probs=126.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p------------- 1011 (1163)
..+|++++|++.+++.|...+.. .+-...+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~-------------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALIS-------------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 46799999999999999888753 1223579999999999999999999999653
Q ss_pred -------------EEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEccccccccCCCCcchHHHHHHHHHH
Q 001076 1012 -------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1074 (1163)
Q Consensus 1012 -------------fi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~----~PsILfIDEID~L~g~r~s~~~~eal~~il~~ 1074 (1163)
++.++.. ....-..++.+...+... ...||||||+|.|- ....+.
T Consensus 79 ~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt------------~~a~na 140 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS------------TAAFNA 140 (620)
T ss_pred HHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC------------HHHHHH
Confidence 1222211 112334667777666532 34699999999882 224456
Q ss_pred HHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCC
Q 001076 1075 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1153 (1163)
Q Consensus 1075 LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGy 1153 (1163)
|+..++. ....+++|++|+.+..+.+++++|+ .++.|..++.++....+..++.+.++. ++..+..|++.+.|-
T Consensus 141 LLK~LEe----Pp~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~ 215 (620)
T PRK14948 141 LLKTLEE----PPPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGG 215 (620)
T ss_pred HHHHHhc----CCcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC
Confidence 6666664 2356778888888888999999998 688999999998888888888775543 445578888888874
Q ss_pred C
Q 001076 1154 S 1154 (1163)
Q Consensus 1154 S 1154 (1163)
-
T Consensus 216 l 216 (620)
T PRK14948 216 L 216 (620)
T ss_pred H
Confidence 4
No 137
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=1.6e-10 Score=138.91 Aligned_cols=173 Identities=21% Similarity=0.313 Sum_probs=122.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p------------- 1011 (1163)
..+|++++|++.+.+.|...+.. .+.++.+||+||+|+|||++|+.+|+.+++.
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKL-------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 46799999999999999888852 2233568999999999999999999998641
Q ss_pred -----------EEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEccccccccCCCCcchHHHHHHHHHHHH
Q 001076 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1163)
Q Consensus 1012 -----------fi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~----~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL 1076 (1163)
++.++.+. ...-..++.+...+... ...|++|||+|.|. ...++.|+
T Consensus 79 c~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------~~a~naLL 140 (486)
T PRK14953 79 CVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------KEAFNALL 140 (486)
T ss_pred HHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------HHHHHHHH
Confidence 12222111 01122345554444332 35699999999773 22345566
Q ss_pred HHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCC
Q 001076 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1153 (1163)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGy 1153 (1163)
..++.. +..+++|.+|+.++.+.+++.+|+ .++.+.+|+.++...+++.++...++. ++..+..|+..+.|-
T Consensus 141 k~LEep----p~~~v~Il~tt~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~ 213 (486)
T PRK14953 141 KTLEEP----PPRTIFILCTTEYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGG 213 (486)
T ss_pred HHHhcC----CCCeEEEEEECCHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 555543 234566666777788888999998 589999999999999999999887754 455678888888764
No 138
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.25 E-value=9.6e-11 Score=146.18 Aligned_cols=169 Identities=20% Similarity=0.355 Sum_probs=115.5
Q ss_pred CCCcccccCcHHHHH---HHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001076 945 GVTFDDIGALENVKD---TLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1163)
Q Consensus 945 ~~tfddI~Gleevk~---~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~ 1021 (1163)
..+|++++|++.+.. .|...+.. . ...++||+||||||||+||+++|+..+.+|+.+++....
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~----------~----~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~ 89 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA----------D----RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG 89 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc----------C----CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh
Confidence 467899999998875 45554431 1 225799999999999999999999999999988865311
Q ss_pred cccccchHHHHHHHHHHHh-----ccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEe
Q 001076 1022 SKWFGEGEKYVKAVFSLAS-----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1096 (1163)
Q Consensus 1022 s~~~Ge~E~~Ir~lF~~A~-----k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTT 1096 (1163)
...++.++..+. .....||||||||.|- ...+ +.|+..++ ...+++|++|
T Consensus 90 -------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln-----~~qQ-------daLL~~lE------~g~IiLI~aT 144 (725)
T PRK13341 90 -------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFN-----KAQQ-------DALLPWVE------NGTITLIGAT 144 (725)
T ss_pred -------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC-----HHHH-------HHHHHHhc------CceEEEEEec
Confidence 112333333321 1245799999999872 1111 22333332 2457777765
Q ss_pred --CCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhh-------CCC-CChhhHHHHHHHcCCC
Q 001076 1097 --NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-------EEL-ASDVDLEGIANMADGY 1153 (1163)
Q Consensus 1097 --N~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k-------~~l-~~dvdl~~LA~~TeGy 1153 (1163)
|....+++++++|+ .++.|++++.+++..+++.++.. ..+ .++..++.|++.+.|-
T Consensus 145 Tenp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD 210 (725)
T PRK13341 145 TENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGD 210 (725)
T ss_pred CCChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCC
Confidence 33467889999997 67999999999999999999872 222 2455678888877653
No 139
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.25 E-value=2.3e-10 Score=122.98 Aligned_cols=178 Identities=19% Similarity=0.228 Sum_probs=112.2
Q ss_pred CCccccc--CcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 001076 946 VTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 1020 (1163)
Q Consensus 946 ~tfddI~--Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL 1020 (1163)
.+|++++ +.....+.+.+++. .....+++|+||+|||||+||+++++++ +.+++.+++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~--------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAA--------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHh--------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 4666765 35556677766542 1233689999999999999999999887 578899998876
Q ss_pred ccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeC-CC
Q 001076 1021 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN-RP 1099 (1163)
Q Consensus 1021 ~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN-~p 1099 (1163)
.... ..++.... ...+|||||+|.+-... ...+.+..+++... . ... .+|.|++ .+
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~---~~~~~L~~~l~~~~----~-----~~~-~iIits~~~~ 134 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP---EWQEALFHLYNRVR----E-----AGG-RLLIAGRAAP 134 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh---HHHHHHHHHHHHHH----H-----cCC-eEEEECCCCh
Confidence 5321 22232222 24699999999873110 11223333322221 1 112 3444444 33
Q ss_pred CCC--C-HHHHhcc--CcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCHHHHHhh
Q 001076 1100 FDL--D-EAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKVD 1161 (1163)
Q Consensus 1100 ~~L--d-~aLlrRF--d~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySgaDLk~L 1161 (1163)
..+ . +.+.+|+ ..++.++.|+.+++..+++.++.+.++. ++..+..|+.. -+-+..+|..+
T Consensus 135 ~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~ 201 (226)
T TIGR03420 135 AQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMAL 201 (226)
T ss_pred HHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHH
Confidence 333 2 7788887 4689999999999999999987765543 55557777775 34455566554
No 140
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.25 E-value=6.3e-11 Score=139.34 Aligned_cols=155 Identities=21% Similarity=0.325 Sum_probs=103.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCC
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1059 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL-----g~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r 1059 (1163)
.+++|+||+|+|||+|++++++++ +..++++++.++...+...........|....+ ...+|+||||+.+.++.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 215 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR-SVDLLLIDDIQFLAGKE 215 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH-hCCEEEEehhhhhcCCH
Confidence 569999999999999999999987 577888988776544322111101112222222 35799999999885332
Q ss_pred CCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCC---CCHHHHhccCc--EEEecCCCHHHHHHHHHHHHhh
Q 001076 1060 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLPR--RLMVNLPDAPNREKIIRVILAK 1134 (1163)
Q Consensus 1060 ~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRFd~--vI~I~~Pd~eeR~eILk~ll~k 1134 (1163)
..++.+..+++.+.. ....+||+++..|.. +++.+++||.. ++.|+.|+.++|..|++..+..
T Consensus 216 ---~~~~~l~~~~n~~~~---------~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 216 ---RTQEEFFHTFNALHE---------NGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred ---HHHHHHHHHHHHHHH---------CCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 122233333333321 123355555555543 56888999964 7999999999999999999987
Q ss_pred CCCC-ChhhHHHHHHHcCC
Q 001076 1135 EELA-SDVDLEGIANMADG 1152 (1163)
Q Consensus 1135 ~~l~-~dvdl~~LA~~TeG 1152 (1163)
.++. ++..++.||....|
T Consensus 284 ~~~~l~~e~l~~ia~~~~~ 302 (405)
T TIGR00362 284 EGLELPDEVLEFIAKNIRS 302 (405)
T ss_pred cCCCCCHHHHHHHHHhcCC
Confidence 6654 66668888888765
No 141
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.25 E-value=3.8e-12 Score=157.63 Aligned_cols=172 Identities=19% Similarity=0.255 Sum_probs=124.1
Q ss_pred eeeeecCCCCCCCCCCCC--CCCCCC-cccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcCC
Q 001076 644 IGVRFDRSIPEGNNLGGF--CEDDHG-FFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN 720 (1163)
Q Consensus 644 vgV~Fd~~~~~~~~l~~~--c~~~~~-ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~~ 720 (1163)
-||.+.+|.++||++-.. |..-.. |+.-.+... .+.|.+.....++.+|+.+.. ..|.||||||||.+..++
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~--~~~~~g~~~~~~~~~f~~a~~---~~P~IifIDEiD~l~~~r 260 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF--VEMFVGVGASRVRDMFEQAKK---AAPCIIFIDEIDAVGRQR 260 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHh--HHhhhcccHHHHHHHHHHHHh---cCCcEEEehhHhhhhhcc
Confidence 468889999999998722 222222 332222222 245777777778888887654 799999999999954321
Q ss_pred --------hhhHHHHHHHHhcC---CC--CEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCcccccccc
Q 001076 721 --------NDAYGALKSKLENL---PS--NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRS 787 (1163)
Q Consensus 721 --------~~~~~~i~s~L~~L---~g--~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~ 787 (1163)
.+....+...|..+ .+ .||||++||+++. |||
T Consensus 261 ~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~----------------------lD~------------- 305 (644)
T PRK10733 261 GAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV----------------------LDP------------- 305 (644)
T ss_pred CCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhh----------------------cCH-------------
Confidence 12222222233333 22 7999999996555 444
Q ss_pred ccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhhhhcCCC-CcccccchhhcccCCc
Q 001076 788 KETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLT 864 (1163)
Q Consensus 788 ~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~s 864 (1163)
|++| ||++++++++|+.++|..|++.|.. +.++ .++++..+|..+.||+
T Consensus 306 --------------------------Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~--~~~l~~~~d~~~la~~t~G~s 357 (644)
T PRK10733 306 --------------------------ALLRPGRFDRQVVVGLPDVRGREQILKVHMR--RVPLAPDIDAAIIARGTPGFS 357 (644)
T ss_pred --------------------------HHhCCcccceEEEcCCCCHHHHHHHHHHHhh--cCCCCCcCCHHHHHhhCCCCC
Confidence 8888 9999999999999999999999954 3344 6788999999999999
Q ss_pred hhhhhhHHhHHhhhhhhhc
Q 001076 865 TEGVEKIVGWALSHHFMHC 883 (1163)
Q Consensus 865 gadIe~Lv~~Aas~Al~r~ 883 (1163)
|+||+.||++|+..|.++.
T Consensus 358 gadl~~l~~eAa~~a~r~~ 376 (644)
T PRK10733 358 GADLANLVNEAALFAARGN 376 (644)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 9999999999999998643
No 142
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.24 E-value=7e-11 Score=131.46 Aligned_cols=141 Identities=23% Similarity=0.326 Sum_probs=91.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc------cccccccchHHHH-H-------------------HHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ITSKWFGEGEKYV-K-------------------AVFSL 1038 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~se------L~s~~~Ge~E~~I-r-------------------~lF~~ 1038 (1163)
.++||+||||||||++|+++|+.+|.+|+.++|.. +++.+.+.....+ . ..+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 57999999999999999999999999999998754 3333332211111 1 11222
Q ss_pred HhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcc-----cCCCCEEEEEEeCCC-----CCCCHHHHh
Q 001076 1039 ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-----KDKERVLVLAATNRP-----FDLDEAVVR 1108 (1163)
Q Consensus 1039 A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~-----k~~~~VlVIaTTN~p-----~~Ld~aLlr 1108 (1163)
|.+ ...+|+||||+++ ++..+..+..++++....+.+... +.+.++.||+|+|.. ..+++++++
T Consensus 102 A~~-~g~~lllDEi~r~-----~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~ 175 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRS-----KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD 175 (262)
T ss_pred HHH-cCCEEEEcchhhC-----CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh
Confidence 333 3479999999976 222222222222211111111110 122478899999975 367899999
Q ss_pred ccCcEEEecCCCHHHHHHHHHHHH
Q 001076 1109 RLPRRLMVNLPDAPNREKIIRVIL 1132 (1163)
Q Consensus 1109 RFd~vI~I~~Pd~eeR~eILk~ll 1132 (1163)
|| ..+.++.|+.++..+|++..+
T Consensus 176 R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 176 RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred hc-EEEECCCCCHHHHHHHHHHhh
Confidence 99 789999999999999998764
No 143
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.24 E-value=3.4e-10 Score=130.52 Aligned_cols=191 Identities=17% Similarity=0.231 Sum_probs=122.6
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---------CcEEEEeccc
Q 001076 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------ANFINISMSS 1019 (1163)
Q Consensus 949 ddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg---------~pfi~Id~se 1019 (1163)
+++.|.++.++.|..++...+. ...+..++|+||||||||++++++++++. +.++.++|..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~----------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR----------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 3788999999999888753221 12235799999999999999999998762 6788889865
Q ss_pred cccc----------cc--c--------chHHHHHHHHHHHhc-cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHH
Q 001076 1020 ITSK----------WF--G--------EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1078 (1163)
Q Consensus 1020 L~s~----------~~--G--------e~E~~Ir~lF~~A~k-~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~ 1078 (1163)
..+. +. + ........++..... ..+.||+|||+|.|.+.. . .++..++..
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~-----~----~~L~~l~~~ 155 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD-----D----DLLYQLSRA 155 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC-----c----HHHHhHhcc
Confidence 3211 10 1 112233445554432 456899999999996211 1 133333322
Q ss_pred hcCCcccCCCCEEEEEEeCCCC---CCCHHHHhccC-cEEEecCCCHHHHHHHHHHHHhh---CCCCChhhHHH---HHH
Q 001076 1079 WDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAK---EELASDVDLEG---IAN 1148 (1163)
Q Consensus 1079 Ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRFd-~vI~I~~Pd~eeR~eILk~ll~k---~~l~~dvdl~~---LA~ 1148 (1163)
++. ....+.++.+|+++|.+. .+++.+.+||. ..+.|++++.++..+|++..+.. ....++..+.. ++.
T Consensus 156 ~~~-~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~ 234 (365)
T TIGR02928 156 RSN-GDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAA 234 (365)
T ss_pred ccc-cCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH
Confidence 111 111236799999998875 57788888885 67999999999999999998862 22223333334 344
Q ss_pred HcCCCCHHHHH
Q 001076 1149 MADGYSGSDLK 1159 (1163)
Q Consensus 1149 ~TeGySgaDLk 1159 (1163)
.+.|.....+.
T Consensus 235 ~~~Gd~R~al~ 245 (365)
T TIGR02928 235 QEHGDARKAID 245 (365)
T ss_pred HhcCCHHHHHH
Confidence 44566554443
No 144
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=3.2e-10 Score=136.91 Aligned_cols=172 Identities=20% Similarity=0.265 Sum_probs=123.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~-------------- 1010 (1163)
..+|++++|++.+++.|...+.. + +.++.+||+||+|+|||++|+++|+.+.+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~----------g---rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~ 76 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDN----------N---RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQ 76 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc----------C---CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 46899999999999999988752 2 23356799999999999999999999832
Q ss_pred ----------cEEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEccccccccCCCCcchHHHHHHHHHHHH
Q 001076 1011 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1163)
Q Consensus 1011 ----------pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~----~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL 1076 (1163)
.++.++...- ..-..++.+...+... ...|++|||+|.|. ....+.|+
T Consensus 77 C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt------------~~A~NALL 138 (535)
T PRK08451 77 CQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT------------KEAFNALL 138 (535)
T ss_pred HHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHH
Confidence 1223332110 0123455554433222 23599999999882 22345555
Q ss_pred HHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCC
Q 001076 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADG 1152 (1163)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeG 1152 (1163)
..++.. +..+.+|.+|+.+..+.+++++|+ .++.|..++.++....++.++.+.++. ++..+..|++.+.|
T Consensus 139 K~LEEp----p~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G 210 (535)
T PRK08451 139 KTLEEP----PSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG 210 (535)
T ss_pred HHHhhc----CCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 555543 245777777788899999999997 689999999999999999999887654 55667888888877
No 145
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.23 E-value=3.8e-10 Score=122.22 Aligned_cols=167 Identities=20% Similarity=0.233 Sum_probs=107.3
Q ss_pred CCCccccc--CcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 001076 945 GVTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1163)
Q Consensus 945 ~~tfddI~--Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~se 1019 (1163)
..+|+++. +.+.+...+.++.. + .....+++|+||+|||||+||+++++++ +.+++.+++..
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~-----------~--~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAA-----------G--PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHh-----------c--cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 46788866 33455555555442 1 1233579999999999999999999876 77888888766
Q ss_pred cccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCC-
Q 001076 1020 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR- 1098 (1163)
Q Consensus 1020 L~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~- 1098 (1163)
+... + .......+|+|||+|.+- ...+..+..+++.+. .....++|.+++.
T Consensus 81 ~~~~------------~--~~~~~~~~liiDdi~~l~-----~~~~~~L~~~~~~~~---------~~~~~~vl~~~~~~ 132 (227)
T PRK08903 81 PLLA------------F--DFDPEAELYAVDDVERLD-----DAQQIALFNLFNRVR---------AHGQGALLVAGPAA 132 (227)
T ss_pred hHHH------------H--hhcccCCEEEEeChhhcC-----chHHHHHHHHHHHHH---------HcCCcEEEEeCCCC
Confidence 4321 1 112245799999999762 122333333333221 1123334444433
Q ss_pred C--CCCCHHHHhcc--CcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCC
Q 001076 1099 P--FDLDEAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADG 1152 (1163)
Q Consensus 1099 p--~~Ld~aLlrRF--d~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeG 1152 (1163)
+ ..+.+.+++|| ...+.+++|+.+++..+++.+..+.++. ++..++.|++.+.|
T Consensus 133 ~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g 191 (227)
T PRK08903 133 PLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR 191 (227)
T ss_pred HHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC
Confidence 3 24568888887 4689999999999999999888765543 55567777776554
No 146
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=3.4e-10 Score=139.04 Aligned_cols=175 Identities=19% Similarity=0.231 Sum_probs=124.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p------------- 1011 (1163)
..+|++|+|++.+++.|...+.. .+-+..+||+||+|+|||++|+.+|+.+.+.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~-------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM-------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 46899999999999999887742 2334579999999999999999999999762
Q ss_pred -------------------EEEEeccccccccccchHHHHHHHHHHHh----ccCCeEEEEccccccccCCCCcchHHHH
Q 001076 1012 -------------------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAM 1068 (1163)
Q Consensus 1012 -------------------fi~Id~seL~s~~~Ge~E~~Ir~lF~~A~----k~~PsILfIDEID~L~g~r~s~~~~eal 1068 (1163)
|+.++... . .....|+.+...+. ....-|+||||+|.|.
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s----~--~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt------------ 140 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAAS----N--NSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS------------ 140 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEecccc----c--CCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC------------
Confidence 11121110 0 11234555444442 2234699999999883
Q ss_pred HHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCC-CChhhHHHHH
Q 001076 1069 RKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIA 1147 (1163)
Q Consensus 1069 ~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l-~~dvdl~~LA 1147 (1163)
....+.|+..++.. ...+++|.+|+.+..|.+.+.+|. .++.|..++.++....+..++.+.++ .++..++.|+
T Consensus 141 ~~a~naLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La 215 (620)
T PRK14954 141 TAAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIA 215 (620)
T ss_pred HHHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 12245566666543 234666666777788889999998 68999999999999899988887665 4667788899
Q ss_pred HHcCCCCH
Q 001076 1148 NMADGYSG 1155 (1163)
Q Consensus 1148 ~~TeGySg 1155 (1163)
..+.|.-+
T Consensus 216 ~~s~Gdlr 223 (620)
T PRK14954 216 RKAQGSMR 223 (620)
T ss_pred HHhCCCHH
Confidence 99887433
No 147
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.22 E-value=3.9e-10 Score=123.58 Aligned_cols=174 Identities=14% Similarity=0.160 Sum_probs=108.8
Q ss_pred CCCccccc-C-cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 001076 945 GVTFDDIG-A-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1163)
Q Consensus 945 ~~tfddI~-G-leevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~se 1019 (1163)
..+|++++ | ...+...+...... .....++|+||+|+|||+|+.++++++ +..+..++...
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~--------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQ--------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 34677766 3 44455555554321 112479999999999999999999876 34455555433
Q ss_pred cccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCE-EEEEEeCC
Q 001076 1020 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV-LVLAATNR 1098 (1163)
Q Consensus 1020 L~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~V-lVIaTTN~ 1098 (1163)
... ....+...... ..+|+||||+.+.+. +..++.+..+++.++. ..+. +++++++.
T Consensus 84 ~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~---~~~~~~lf~l~n~~~e---------~g~~~li~ts~~~ 141 (235)
T PRK08084 84 RAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGD---ELWEMAIFDLYNRILE---------SGRTRLLITGDRP 141 (235)
T ss_pred Hhh--------hhHHHHHHhhh--CCEEEEeChhhhcCC---HHHHHHHHHHHHHHHH---------cCCCeEEEeCCCC
Confidence 221 11112221111 258999999987422 2223344444444431 1333 44444455
Q ss_pred CCC---CCHHHHhccC--cEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCC
Q 001076 1099 PFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1154 (1163)
Q Consensus 1099 p~~---Ld~aLlrRFd--~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGyS 1154 (1163)
|.. +.+.+++|+. .++.+..|+.++|.++++......++. ++..++.|++..+|-.
T Consensus 142 p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~ 203 (235)
T PRK08084 142 PRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREM 203 (235)
T ss_pred hHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCH
Confidence 555 5799999985 689999999999999999877665543 6666888888887543
No 148
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=2e-10 Score=135.03 Aligned_cols=175 Identities=18% Similarity=0.211 Sum_probs=121.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p------------- 1011 (1163)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~-------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRM-------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHh-------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 46799999999999999887752 2334569999999999999999999999662
Q ss_pred -------------------EEEEeccccccccccchHHHHHHHHHHHhc----cCCeEEEEccccccccCCCCcchHHHH
Q 001076 1012 -------------------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAM 1068 (1163)
Q Consensus 1012 -------------------fi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k----~~PsILfIDEID~L~g~r~s~~~~eal 1068 (1163)
|+.++... ......++.+...+.. ....||||||+|.|.
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~------------ 140 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS------------ 140 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC------------
Confidence 22222111 0112345554444422 234699999999883
Q ss_pred HHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCC-CChhhHHHHH
Q 001076 1069 RKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIA 1147 (1163)
Q Consensus 1069 ~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l-~~dvdl~~LA 1147 (1163)
....+.|+..++.. +...++|.+|+.+..+.+.+.+|+ .++.+..++.++-.+.++..+.+.++ .++..++.|+
T Consensus 141 ~~~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~ 215 (397)
T PRK14955 141 IAAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIG 215 (397)
T ss_pred HHHHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 11234455555432 245666666677788888899888 57899999999999999988877664 4666678888
Q ss_pred HHcCCCCH
Q 001076 1148 NMADGYSG 1155 (1163)
Q Consensus 1148 ~~TeGySg 1155 (1163)
..+.|.-.
T Consensus 216 ~~s~g~lr 223 (397)
T PRK14955 216 RKAQGSMR 223 (397)
T ss_pred HHcCCCHH
Confidence 88887433
No 149
>PRK06893 DNA replication initiation factor; Validated
Probab=99.22 E-value=2.5e-10 Score=124.66 Aligned_cols=148 Identities=18% Similarity=0.213 Sum_probs=95.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCC
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1061 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s 1061 (1163)
+.++|+||||+|||+|+.++|+++ +.....+++.... .....++.... ...+|+||||+.+.+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~~--~~dlLilDDi~~~~~~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENLE--QQDLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhcc--cCCEEEEeChhhhcCCh--
Confidence 368999999999999999999987 4455555543211 11112222222 45799999999874322
Q ss_pred cchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCC---HHHHhcc--CcEEEecCCCHHHHHHHHHHHHhhCC
Q 001076 1062 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD---EAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEE 1136 (1163)
Q Consensus 1062 ~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld---~aLlrRF--d~vI~I~~Pd~eeR~eILk~ll~k~~ 1136 (1163)
.....+..+++.+.. .+..++|++++..|..++ +.+.+|+ +.++.++.|+.++|.+|++..+...+
T Consensus 108 -~~~~~l~~l~n~~~~--------~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 108 -EWELAIFDLFNRIKE--------QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred -HHHHHHHHHHHHHHH--------cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 112233333333221 112345555555666554 7888876 46899999999999999999887655
Q ss_pred CC-ChhhHHHHHHHcCCC
Q 001076 1137 LA-SDVDLEGIANMADGY 1153 (1163)
Q Consensus 1137 l~-~dvdl~~LA~~TeGy 1153 (1163)
+. ++..+..|++..+|-
T Consensus 179 l~l~~~v~~~L~~~~~~d 196 (229)
T PRK06893 179 IELSDEVANFLLKRLDRD 196 (229)
T ss_pred CCCCHHHHHHHHHhccCC
Confidence 53 566678888877653
No 150
>CHL00176 ftsH cell division protein; Validated
Probab=99.21 E-value=7.2e-12 Score=154.29 Aligned_cols=171 Identities=22% Similarity=0.297 Sum_probs=121.4
Q ss_pred eeeeecCCCCCCCCCC--CCCCCCCC-cccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcC-
Q 001076 644 IGVRFDRSIPEGNNLG--GFCEDDHG-FFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG- 719 (1163)
Q Consensus 644 vgV~Fd~~~~~~~~l~--~~c~~~~~-ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~- 719 (1163)
-||.|.+|+++||++- ..|..... ||+-....- .+.|++.....++.+|+.+.. +.|.||||||||.+...
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f--~~~~~g~~~~~vr~lF~~A~~---~~P~ILfIDEID~l~~~r 291 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEF--VEMFVGVGAARVRDLFKKAKE---NSPCIVFIDEIDAVGRQR 291 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHH--HHHhhhhhHHHHHHHHHHHhc---CCCcEEEEecchhhhhcc
Confidence 4788999999999987 22222222 332211111 134555555567777776654 89999999999995431
Q ss_pred -------ChhhHHHHHHHHhcCC-----CCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCcccccccc
Q 001076 720 -------NNDAYGALKSKLENLP-----SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRS 787 (1163)
Q Consensus 720 -------~~~~~~~i~s~L~~L~-----g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~ 787 (1163)
+.+....+-..|..+. .+|+||++||+++. |||
T Consensus 292 ~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~----------------------LD~------------- 336 (638)
T CHL00176 292 GAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDI----------------------LDA------------- 336 (638)
T ss_pred cCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHh----------------------hhh-------------
Confidence 2233333333343332 37999999996554 333
Q ss_pred ccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhhhhcCCC-CcccccchhhcccCCc
Q 001076 788 KETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLT 864 (1163)
Q Consensus 788 ~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~s 864 (1163)
||+| ||++++++++|+.++|..|++.|... ..+ .++++..+|..+.||+
T Consensus 337 --------------------------ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~--~~~~~d~~l~~lA~~t~G~s 388 (638)
T CHL00176 337 --------------------------ALLRPGRFDRQITVSLPDREGRLDILKVHARN--KKLSPDVSLELIARRTPGFS 388 (638)
T ss_pred --------------------------hhhccccCceEEEECCCCHHHHHHHHHHHHhh--cccchhHHHHHHHhcCCCCC
Confidence 7887 99999999999999999999999654 333 7889999999999999
Q ss_pred hhhhhhHHhHHhhhhhhh
Q 001076 865 TEGVEKIVGWALSHHFMH 882 (1163)
Q Consensus 865 gadIe~Lv~~Aas~Al~r 882 (1163)
++||+.+|.+|+..+.++
T Consensus 389 gaDL~~lvneAal~a~r~ 406 (638)
T CHL00176 389 GADLANLLNEAAILTARR 406 (638)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999887654
No 151
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.20 E-value=7.1e-10 Score=125.05 Aligned_cols=174 Identities=22% Similarity=0.296 Sum_probs=119.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEeccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 1019 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg-----~pfi~Id~se 1019 (1163)
..+|++++|++++++.+..++.. + . .+++||+||||+|||++++++++++. .+++.+++++
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~----------~---~-~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~ 78 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKE----------K---N-MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD 78 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhC----------C---C-CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc
Confidence 46899999999999999888742 1 1 13699999999999999999999972 3456565443
Q ss_pred cccccccchHHHHHHHH-HHHhc-----cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEE
Q 001076 1020 ITSKWFGEGEKYVKAVF-SLASK-----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1093 (1163)
Q Consensus 1020 L~s~~~Ge~E~~Ir~lF-~~A~k-----~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVI 1093 (1163)
... ...+...+ ..+.. ..+.+|+|||+|.|.. . ..+.|+..++... ....+|
T Consensus 79 ~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-----~-------~~~~L~~~le~~~----~~~~lI 136 (319)
T PRK00440 79 ERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-----D-------AQQALRRTMEMYS----QNTRFI 136 (319)
T ss_pred ccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-----H-------HHHHHHHHHhcCC----CCCeEE
Confidence 211 11122222 22221 2356999999998731 1 1123333333322 235666
Q ss_pred EEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCC-CChhhHHHHHHHcCCCCH
Q 001076 1094 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSG 1155 (1163)
Q Consensus 1094 aTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l-~~dvdl~~LA~~TeGySg 1155 (1163)
.++|.+..+.+.+.+|+ .++.+.+++.++...+++.++.+.++ .++..+..|+..+.|.-.
T Consensus 137 l~~~~~~~l~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r 198 (319)
T PRK00440 137 LSCNYSSKIIDPIQSRC-AVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMR 198 (319)
T ss_pred EEeCCccccchhHHHHh-heeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 67787788888899998 47999999999999999999988765 356678888888877544
No 152
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.20 E-value=3.4e-10 Score=110.05 Aligned_cols=124 Identities=40% Similarity=0.580 Sum_probs=80.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccchHHH---HHHHHHHHhccCCeEEEEcccccccc
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKY---VKAVFSLASKIAPSVVFVDEVDSMLG 1057 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~~~Ge~E~~---Ir~lF~~A~k~~PsILfIDEID~L~g 1057 (1163)
..+++|+||||+|||++++.+++.+ +.+++.+++.............. ....+..+....+.+|+|||++.+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~- 97 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS- 97 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh-
Confidence 3579999999999999999999998 89999999877554332211111 1122334455578999999999761
Q ss_pred CCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCC--CCCHHHHhccCcEEEec
Q 001076 1058 RRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--DLDEAVVRRLPRRLMVN 1117 (1163)
Q Consensus 1058 ~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~--~Ld~aLlrRFd~vI~I~ 1117 (1163)
. .....+...+....... ....++.+|+++|... .+++.+.+||+.++.++
T Consensus 98 ----~---~~~~~~~~~i~~~~~~~--~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 98 ----R---GAQNALLRVLETLNDLR--IDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred ----H---HHHHHHHHHHHhcCcee--ccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 1 11111222222111111 1235789999998876 78889999998776664
No 153
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.20 E-value=1.4e-10 Score=138.11 Aligned_cols=155 Identities=19% Similarity=0.299 Sum_probs=103.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccchH-HHHHHHHHHHhccCCeEEEEccccccccC
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGE-KYVKAVFSLASKIAPSVVFVDEVDSMLGR 1058 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL-----g~pfi~Id~seL~s~~~Ge~E-~~Ir~lF~~A~k~~PsILfIDEID~L~g~ 1058 (1163)
.+++||||+|+|||+|+.++++++ +..++++++.+++..+..... ..+ .-|...++..+.+|+|||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~-~~f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKL-NEFREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccH-HHHHHHHHhcCCEEEEechhhhcCc
Confidence 469999999999999999999986 467888888776544322111 111 2244444456889999999988543
Q ss_pred CCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCC---CCHHHHhccC--cEEEecCCCHHHHHHHHHHHHh
Q 001076 1059 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILA 1133 (1163)
Q Consensus 1059 r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRFd--~vI~I~~Pd~eeR~eILk~ll~ 1133 (1163)
.. .++.+..+++.+.. ....+||++...|.. +.+.+++||. .++.+.+|+.+.|..|++..+.
T Consensus 210 ~~---~q~elf~~~n~l~~---------~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 210 TG---VQTELFHTFNELHD---------SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred HH---HHHHHHHHHHHHHH---------cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 21 12233333443331 123455555556654 4567888883 4788999999999999999987
Q ss_pred hCCCC-ChhhHHHHHHHcCC
Q 001076 1134 KEELA-SDVDLEGIANMADG 1152 (1163)
Q Consensus 1134 k~~l~-~dvdl~~LA~~TeG 1152 (1163)
..++. ++..++.||....|
T Consensus 278 ~~~~~l~~ev~~~Ia~~~~~ 297 (440)
T PRK14088 278 IEHGELPEEVLNFVAENVDD 297 (440)
T ss_pred hcCCCCCHHHHHHHHhcccc
Confidence 65443 55668888887765
No 154
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=9.9e-12 Score=133.90 Aligned_cols=169 Identities=21% Similarity=0.258 Sum_probs=121.5
Q ss_pred eeeecCCCCCCCCCCCCCCCCC--Cccccc-ccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhc-C-
Q 001076 645 GVRFDRSIPEGNNLGGFCEDDH--GFFCTA-SSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT-G- 719 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~~~c~~~~--~ff~~~-~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La-~- 719 (1163)
||..-+|+++|+++-.-.--.| .-|-++ |.-- .-++-|+.-|.++-+|.++.+ +.|+|||+||||. +| +
T Consensus 191 gvllygppg~gktml~kava~~t~a~firvvgsef--vqkylgegprmvrdvfrlake---napsiifideida-iatkr 264 (408)
T KOG0727|consen 191 GVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF--VQKYLGEGPRMVRDVFRLAKE---NAPSIIFIDEIDA-IATKR 264 (408)
T ss_pred ceEEeCCCCCcHHHHHHHHhhccchheeeeccHHH--HHHHhccCcHHHHHHHHHHhc---cCCcEEEeehhhh-Hhhhh
Confidence 4555568999998762111111 124343 3322 346778888999999988877 9999999999999 55 2
Q ss_pred ------ChhhHHH-HHHHHhcCCC-----CEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCcccccccc
Q 001076 720 ------NNDAYGA-LKSKLENLPS-----NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRS 787 (1163)
Q Consensus 720 ------~~~~~~~-i~s~L~~L~g-----~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~ 787 (1163)
-+.-..+ +-..|..+.| +|-||.+||+.|. |||
T Consensus 265 fdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradt----------------------ldp------------- 309 (408)
T KOG0727|consen 265 FDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADT----------------------LDP------------- 309 (408)
T ss_pred ccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccc----------------------cCH-------------
Confidence 2222222 3334444455 9999999998776 666
Q ss_pred ccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhhhhcCCC-CcccccchhhcccCCc
Q 001076 788 KETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLT 864 (1163)
Q Consensus 788 ~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~s 864 (1163)
||+| |++|.+||+|||..-+.-++.--| ..-.+ +++||+.+.......+
T Consensus 310 --------------------------allrpgrldrkiefplpdrrqkrlvf~tit--skm~ls~~vdle~~v~rpdkis 361 (408)
T KOG0727|consen 310 --------------------------ALLRPGRLDRKIEFPLPDRRQKRLVFSTIT--SKMNLSDEVDLEDLVARPDKIS 361 (408)
T ss_pred --------------------------hhcCCccccccccCCCCchhhhhhhHHhhh--hcccCCcccCHHHHhcCccccc
Confidence 8999 999999999999776554443332 22234 7899999999888999
Q ss_pred hhhhhhHHhHHhhhhhhh
Q 001076 865 TEGVEKIVGWALSHHFMH 882 (1163)
Q Consensus 865 gadIe~Lv~~Aas~Al~r 882 (1163)
||+|.++|.+|..+|.+.
T Consensus 362 ~adi~aicqeagm~avr~ 379 (408)
T KOG0727|consen 362 GADINAICQEAGMLAVRE 379 (408)
T ss_pred hhhHHHHHHHHhHHHHHh
Confidence 999999999999999864
No 155
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.19 E-value=1e-09 Score=128.07 Aligned_cols=186 Identities=17% Similarity=0.227 Sum_probs=123.7
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccccc
Q 001076 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS 1022 (1163)
Q Consensus 948 fddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL-----g~pfi~Id~seL~s 1022 (1163)
.+.+.|.++..+.|...+...+. ...+.+++|+||||+|||++++.+++++ ++.++.++|....+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~----------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALR----------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhC----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 35688999999998888753221 1123579999999999999999999887 57889999864321
Q ss_pred ----------cccc--------chHHHHHHHHHHHhc-cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCc
Q 001076 1023 ----------KWFG--------EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1083 (1163)
Q Consensus 1023 ----------~~~G--------e~E~~Ir~lF~~A~k-~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~ 1083 (1163)
...+ ..+..+..++....+ ..+.||+|||+|.+..... ...+..|+..+...
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~--------~~~l~~l~~~~~~~- 169 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG--------NDVLYSLLRAHEEY- 169 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC--------chHHHHHHHhhhcc-
Confidence 1111 112333344433332 3468999999998862111 12334444444333
Q ss_pred ccCCCCEEEEEEeCCC---CCCCHHHHhccC-cEEEecCCCHHHHHHHHHHHHhhC---CCCChhhHHHHHHHcCCCC
Q 001076 1084 TKDKERVLVLAATNRP---FDLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAKE---ELASDVDLEGIANMADGYS 1154 (1163)
Q Consensus 1084 ~k~~~~VlVIaTTN~p---~~Ld~aLlrRFd-~vI~I~~Pd~eeR~eILk~ll~k~---~l~~dvdl~~LA~~TeGyS 1154 (1163)
...++.+|+++|.. +.+++.+.+||. ..+.|++++.++..+|++..+... ...++..++.+++.+.+.+
T Consensus 170 --~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~ 245 (394)
T PRK00411 170 --PGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREH 245 (394)
T ss_pred --CCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhc
Confidence 12478889998875 357788888774 578999999999999999987542 2345566788888885433
No 156
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.18 E-value=1.1e-10 Score=139.45 Aligned_cols=178 Identities=23% Similarity=0.290 Sum_probs=134.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------EEEe-
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------INIS- 1016 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pf-------i~Id- 1016 (1163)
..+|++++|++.+.+.|...+.. .+-....||.||.|+|||++||.+|+.+++.- ..|.
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~-------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALEN-------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHh-------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 45799999999999999998864 23346799999999999999999999996542 1111
Q ss_pred ccccccc-c---------ccchHHHHHHHHHHHhc----cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCC
Q 001076 1017 MSSITSK-W---------FGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1082 (1163)
Q Consensus 1017 ~seL~s~-~---------~Ge~E~~Ir~lF~~A~k----~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl 1082 (1163)
|-.+... + -...-..++.+.+.+.. ....|.+|||+|.|. ...+|.||..++.
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS------------~~afNALLKTLEE- 145 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS------------KQAFNALLKTLEE- 145 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh------------HHHHHHHhccccc-
Confidence 1111110 0 01122345565555543 345699999999772 5567788777655
Q ss_pred cccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCC
Q 001076 1083 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADG 1152 (1163)
Q Consensus 1083 ~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeG 1152 (1163)
++..|.+|.+|..+..++..+++|+ .++.|...+.++....++.++.++++. ++..+..||+..+|
T Consensus 146 ---PP~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G 212 (515)
T COG2812 146 ---PPSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG 212 (515)
T ss_pred ---CccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC
Confidence 4578999999999999999999999 688999999999999999999988876 55568889999888
No 157
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.18 E-value=1.8e-11 Score=146.88 Aligned_cols=168 Identities=18% Similarity=0.194 Sum_probs=121.5
Q ss_pred eeeecCCCCCCCCCC-----CCCCCC-------CCccccc-ccccccCCCcchhhHHHHHHHHHHHHhhcc-CCCeEEEE
Q 001076 645 GVRFDRSIPEGNNLG-----GFCEDD-------HGFFCTA-SSLRLDSSLGDEVDKLAINELFEVALNESK-SSPLIVFV 710 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~-----~~c~~~-------~~ff~~~-~~~~~d~s~~~~~~~~~l~~l~evl~~e~k-~~P~IIff 710 (1163)
||.|.+|+++|||+. +++... ..+|.+. +..- +++|.++.++.++.+|+.+...+. .+|.||||
T Consensus 218 GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eL--l~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfI 295 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPEL--LNKYVGETERQIRLIFQRAREKASDGRPVIVFF 295 (512)
T ss_pred ceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhh--cccccchHHHHHHHHHHHHHHHhhcCCCceEEE
Confidence 788889999999965 222211 1233332 2222 578999999999999999887655 68999999
Q ss_pred cchhhhhcC-----ChhhHHHHHHHHhcC------CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCC
Q 001076 711 KDIEKSLTG-----NNDAYGALKSKLENL------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDN 779 (1163)
Q Consensus 711 ddid~~La~-----~~~~~~~i~s~L~~L------~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~ 779 (1163)
||||.++.. ..+....++..|+.. .++|+|||+||+++. |||
T Consensus 296 DEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~----------------------LDp----- 348 (512)
T TIGR03689 296 DEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDM----------------------IDP----- 348 (512)
T ss_pred ehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhh----------------------CCH-----
Confidence 999996653 234555566555443 258999999997655 555
Q ss_pred ccccccccccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhhhhcCCCCcccccchh
Q 001076 780 FSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLC 857 (1163)
Q Consensus 780 ~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~l~~~~L~~vdLeeLa 857 (1163)
|++| ||++++++++|+.++|..|++.|..-. -++ +.+ .
T Consensus 349 ----------------------------------ALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~-l~l-~~~----l 388 (512)
T TIGR03689 349 ----------------------------------AILRPGRLDVKIRIERPDAEAAADIFSKYLTDS-LPL-DAD----L 388 (512)
T ss_pred ----------------------------------hhcCccccceEEEeCCCCHHHHHHHHHHHhhcc-CCc-hHH----H
Confidence 8888 999999999999999999999984311 112 222 2
Q ss_pred hcccCCchhhhhhHHhHHhhhhhh
Q 001076 858 IKDQTLTTEGVEKIVGWALSHHFM 881 (1163)
Q Consensus 858 ~~tkg~sgadIe~Lv~~Aas~Al~ 881 (1163)
..+.|+.++++.++|..+....+.
T Consensus 389 ~~~~g~~~a~~~al~~~av~~~~a 412 (512)
T TIGR03689 389 AEFDGDREATAAALIQRAVDHLYA 412 (512)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhh
Confidence 346799999999999999766554
No 158
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.18 E-value=1.5e-11 Score=142.74 Aligned_cols=171 Identities=22% Similarity=0.277 Sum_probs=121.1
Q ss_pred eeeecCCCCCCCCCCC--CCCCCCC-cccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcCC-
Q 001076 645 GVRFDRSIPEGNNLGG--FCEDDHG-FFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN- 720 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~~--~c~~~~~-ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~~- 720 (1163)
||.+.+|+|+||++.. .+..-.. |+.-.+... ...|.++....++.+|+.+.. ++|.||||||+|.+...+
T Consensus 158 gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l--~~~~~g~~~~~i~~~f~~a~~---~~p~il~iDEiD~l~~~~~ 232 (364)
T TIGR01242 158 GVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL--VRKYIGEGARLVREIFELAKE---KAPSIIFIDEIDAIAAKRT 232 (364)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHH--HHHhhhHHHHHHHHHHHHHHh---cCCcEEEhhhhhhhccccc
Confidence 6888889999999872 2222222 332222221 356778777788888776654 899999999999965421
Q ss_pred -------hhhHHHHHHHHhcC-----CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCccccccccc
Q 001076 721 -------NDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSK 788 (1163)
Q Consensus 721 -------~~~~~~i~s~L~~L-----~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~ 788 (1163)
.+....+-..|..+ .++|+||+++|+++. +|+
T Consensus 233 ~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~----------------------ld~-------------- 276 (364)
T TIGR01242 233 DSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI----------------------LDP-------------- 276 (364)
T ss_pred cCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh----------------------CCh--------------
Confidence 11112222233222 458999999996443 333
Q ss_pred cchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhhhhcCCC-CcccccchhhcccCCch
Q 001076 789 ETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTT 865 (1163)
Q Consensus 789 ~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~sg 865 (1163)
+++| ||++.+++++|+...|.+|+++|+. ...+ .+++++.|+..+.||+|
T Consensus 277 -------------------------al~r~grfd~~i~v~~P~~~~r~~Il~~~~~--~~~l~~~~~~~~la~~t~g~sg 329 (364)
T TIGR01242 277 -------------------------ALLRPGRFDRIIEVPLPDFEGRLEILKIHTR--KMKLAEDVDLEAIAKMTEGASG 329 (364)
T ss_pred -------------------------hhcCcccCceEEEeCCcCHHHHHHHHHHHHh--cCCCCccCCHHHHHHHcCCCCH
Confidence 6666 8888899999999999999999974 2233 45789999999999999
Q ss_pred hhhhhHHhHHhhhhhhhc
Q 001076 866 EGVEKIVGWALSHHFMHC 883 (1163)
Q Consensus 866 adIe~Lv~~Aas~Al~r~ 883 (1163)
+||+.+|++|+..|+.+.
T Consensus 330 ~dl~~l~~~A~~~a~~~~ 347 (364)
T TIGR01242 330 ADLKAICTEAGMFAIREE 347 (364)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 999999999999998753
No 159
>PRK08727 hypothetical protein; Validated
Probab=99.18 E-value=1.1e-09 Score=119.93 Aligned_cols=148 Identities=22% Similarity=0.301 Sum_probs=99.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCC
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1061 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s 1061 (1163)
..++|+||+|+|||+|+.++++++ +..++.+++.++.. .+...+.... ...+|+||||+.+.+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCCh--
Confidence 459999999999999999998776 66777777544322 2233333332 44699999999875322
Q ss_pred cchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeC-CCCCC---CHHHHhcc--CcEEEecCCCHHHHHHHHHHHHhhC
Q 001076 1062 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN-RPFDL---DEAVVRRL--PRRLMVNLPDAPNREKIIRVILAKE 1135 (1163)
Q Consensus 1062 ~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN-~p~~L---d~aLlrRF--d~vI~I~~Pd~eeR~eILk~ll~k~ 1135 (1163)
..+..+..+++.+.. .+..||+|+| .|..+ .+.+.+|| ..++.++.|+.++|.+|++......
T Consensus 110 -~~~~~lf~l~n~~~~----------~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 110 -EDEVALFDFHNRARA----------AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred -HHHHHHHHHHHHHHH----------cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 122333333333321 1233555554 55544 68999997 5688999999999999999977665
Q ss_pred CCC-ChhhHHHHHHHcCCCCH
Q 001076 1136 ELA-SDVDLEGIANMADGYSG 1155 (1163)
Q Consensus 1136 ~l~-~dvdl~~LA~~TeGySg 1155 (1163)
++. ++..++.|++.+.|--.
T Consensus 179 ~l~l~~e~~~~La~~~~rd~r 199 (233)
T PRK08727 179 GLALDEAAIDWLLTHGERELA 199 (233)
T ss_pred CCCCCHHHHHHHHHhCCCCHH
Confidence 553 66668888888875433
No 160
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=7.6e-10 Score=136.12 Aligned_cols=172 Identities=21% Similarity=0.281 Sum_probs=120.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------ 1012 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pf------------ 1012 (1163)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+.+|+.+.+..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~-------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAE-------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 46899999999999999887752 12335689999999999999999999985422
Q ss_pred -------------EEEeccccccccccchHHHHHHHHHHHhc----cCCeEEEEccccccccCCCCcchHHHHHHHHHHH
Q 001076 1013 -------------INISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 1075 (1163)
Q Consensus 1013 -------------i~Id~seL~s~~~Ge~E~~Ir~lF~~A~k----~~PsILfIDEID~L~g~r~s~~~~eal~~il~~L 1075 (1163)
+.++... ...-..++.+...+.. ....||||||+|.|- ...++.|
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~------------~~a~naL 140 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS------------TAAFNAL 140 (585)
T ss_pred HHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC------------HHHHHHH
Confidence 2222110 0112234444433322 235699999999872 1234556
Q ss_pred HHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCC
Q 001076 1076 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADG 1152 (1163)
Q Consensus 1076 L~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeG 1152 (1163)
+..++.. ...++||.+++..+.+.+.+++|+ .++.|..++..+...+++.++.+.++. ++..+..|+..+.|
T Consensus 141 Lk~LEep----p~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G 213 (585)
T PRK14950 141 LKTLEEP----PPHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG 213 (585)
T ss_pred HHHHhcC----CCCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 6555543 245677777777777888899898 578999999999999999988876653 55567888888877
No 161
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=1.2e-09 Score=134.77 Aligned_cols=175 Identities=20% Similarity=0.258 Sum_probs=126.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~-------------- 1010 (1163)
..+|++|+|++.+++.|...+.. .+.+..+||+||+|+|||++|+.+|+.+.+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~-------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT-------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 46899999999999999888752 223456999999999999999999998853
Q ss_pred -----------cEEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEccccccccCCCCcchHHHHHHHHHHH
Q 001076 1011 -----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 1075 (1163)
Q Consensus 1011 -----------pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~----~PsILfIDEID~L~g~r~s~~~~eal~~il~~L 1075 (1163)
+++.++.... .....++.+...+... ..-|++|||+|.|. ....+.|
T Consensus 80 sC~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls------------~~a~naL 141 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS------------QAAFNAF 141 (614)
T ss_pred HHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC------------HHHHHHH
Confidence 3334433211 1123455655555432 23599999999882 1234556
Q ss_pred HHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCC
Q 001076 1076 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1154 (1163)
Q Consensus 1076 L~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGyS 1154 (1163)
+..++.. +...++|++|+.+..|-+.+++|+ .++.|..++.++...+++.++.+.++. ++..+..|+..+.|--
T Consensus 142 LK~LEep----p~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdl 216 (614)
T PRK14971 142 LKTLEEP----PSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGM 216 (614)
T ss_pred HHHHhCC----CCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 6666543 245677777777788999999998 679999999999999999998887765 4456888888887643
Q ss_pred H
Q 001076 1155 G 1155 (1163)
Q Consensus 1155 g 1155 (1163)
+
T Consensus 217 r 217 (614)
T PRK14971 217 R 217 (614)
T ss_pred H
Confidence 3
No 162
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.14 E-value=4.6e-10 Score=136.59 Aligned_cols=154 Identities=21% Similarity=0.312 Sum_probs=105.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCC
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1059 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL-----g~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r 1059 (1163)
+.++|||++|+|||+|+.+|++++ +..++++++.+++..+...........|..-++ ...+|+||||+.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 459999999999999999999987 578899998887655443222212223443333 46899999999885332
Q ss_pred CCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCC-C---CCCCHHHHhcc--CcEEEecCCCHHHHHHHHHHHHh
Q 001076 1060 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-P---FDLDEAVVRRL--PRRLMVNLPDAPNREKIIRVILA 1133 (1163)
Q Consensus 1060 ~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~-p---~~Ld~aLlrRF--d~vI~I~~Pd~eeR~eILk~ll~ 1133 (1163)
..++.+..+++.+... .+-+|| |+|. + ..+++.|++|| ..++.|..|+.+.|..||+..+.
T Consensus 394 ---~tqeeLF~l~N~l~e~---------gk~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 394 ---STQEEFFHTFNTLHNA---------NKQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred ---HHHHHHHHHHHHHHhc---------CCCEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 2234444555555421 222334 5554 3 35778999998 45778899999999999999998
Q ss_pred hCCCC-ChhhHHHHHHHcCC
Q 001076 1134 KEELA-SDVDLEGIANMADG 1152 (1163)
Q Consensus 1134 k~~l~-~dvdl~~LA~~TeG 1152 (1163)
..++. ++..++.|+....+
T Consensus 461 ~r~l~l~~eVi~yLa~r~~r 480 (617)
T PRK14086 461 QEQLNAPPEVLEFIASRISR 480 (617)
T ss_pred hcCCCCCHHHHHHHHHhccC
Confidence 76654 55567777777653
No 163
>PHA02244 ATPase-like protein
Probab=99.13 E-value=5.5e-10 Score=128.71 Aligned_cols=136 Identities=20% Similarity=0.261 Sum_probs=85.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccc---chHHHHHHHHHHHhccCCeEEEEccccccccCCCC
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG---EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1061 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~G---e~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s 1061 (1163)
.+|||+||||||||+||+++|+.++.+|+.++.-.-.....| ........-|..|.+ ..++||||||+.+ .
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a-----~ 193 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFK-KGGLFFIDEIDAS-----I 193 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhh-cCCEEEEeCcCcC-----C
Confidence 479999999999999999999999999999874210111111 111112223444443 4689999999966 2
Q ss_pred cchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCC-----------CCCCHHHHhccCcEEEecCCCHHHHHHHH
Q 001076 1062 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-----------FDLDEAVVRRLPRRLMVNLPDAPNREKII 1128 (1163)
Q Consensus 1062 ~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p-----------~~Ld~aLlrRFd~vI~I~~Pd~eeR~eIL 1128 (1163)
+.....+..++......+.+.....+.++.+|+|+|.+ ..+++++++|| ..|.++.|+. ....|.
T Consensus 194 p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~~-~E~~i~ 269 (383)
T PHA02244 194 PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDEK-IEHLIS 269 (383)
T ss_pred HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCcH-HHHHHh
Confidence 22222222222211111111122234689999999973 57899999999 6899999983 333444
No 164
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.13 E-value=1.2e-09 Score=134.78 Aligned_cols=184 Identities=20% Similarity=0.273 Sum_probs=123.9
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecc
Q 001076 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMS 1018 (1163)
Q Consensus 949 ddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL----------g~pfi~Id~s 1018 (1163)
+.|.+.++.++.|..++...+. + ..+...++|+|+||||||++++.+++++ .+.++.++|.
T Consensus 755 D~LPhREeEIeeLasfL~paIk-------g--sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-------Q--SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-------c--CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 4788999999999988864332 1 1232335799999999999999998776 2667899985
Q ss_pred ccccc----------ccc-------chHHHHHHHHHHHhc--cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHh
Q 001076 1019 SITSK----------WFG-------EGEKYVKAVFSLASK--IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1079 (1163)
Q Consensus 1019 eL~s~----------~~G-------e~E~~Ir~lF~~A~k--~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~L 1079 (1163)
.+... +.+ .....+..+|..... ....||+|||||.|... .+..+. .|+. |
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----~QDVLY----nLFR-~ 895 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----TQKVLF----TLFD-W 895 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----HHHHHH----HHHH-H
Confidence 43211 111 123455667765422 33579999999999632 122222 2222 1
Q ss_pred cCCcccCCCCEEEEEEeCC---CCCCCHHHHhccCc-EEEecCCCHHHHHHHHHHHHhhC-CCCChhhHHHHHHHcCCCC
Q 001076 1080 DGLRTKDKERVLVLAATNR---PFDLDEAVVRRLPR-RLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYS 1154 (1163)
Q Consensus 1080 dgl~~k~~~~VlVIaTTN~---p~~Ld~aLlrRFd~-vI~I~~Pd~eeR~eILk~ll~k~-~l~~dvdl~~LA~~TeGyS 1154 (1163)
.. ....++.|||++|. +..|++.+.+||.. .+.|++++.+++.+||+..+... .+.++..+..+|+.+...+
T Consensus 896 ~~---~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~S 972 (1164)
T PTZ00112 896 PT---KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVS 972 (1164)
T ss_pred hh---ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcC
Confidence 11 12367999999986 56677888888864 48889999999999999988753 3456666888888665443
No 165
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.13 E-value=7.2e-10 Score=136.86 Aligned_cols=186 Identities=20% Similarity=0.287 Sum_probs=115.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEE
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFIN 1014 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL----------g~pfi~ 1014 (1163)
..+|++++|++...+.+...+.. . .+.+++|+||||||||++|+++++.. +.+|+.
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~-------------~-~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS-------------P-FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc-------------C-CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 46789999999998887665531 1 12579999999999999999998665 357899
Q ss_pred Eeccccc-------cccccchHHH----HHHHHHH----------HhccCCeEEEEccccccccCCCCcchHHHHHHHHH
Q 001076 1015 ISMSSIT-------SKWFGEGEKY----VKAVFSL----------ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN 1073 (1163)
Q Consensus 1015 Id~seL~-------s~~~Ge~E~~----Ir~lF~~----------A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~ 1073 (1163)
+++..+. ..+++..... .+..+.. ......+||||||++.| +...+..+..+++
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----d~~~Q~~Ll~~Le 290 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----DPLLQNKLLKVLE 290 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----CHHHHHHHHHHHh
Confidence 9987642 1122211110 0111100 01223579999999987 3333333333333
Q ss_pred HHHHHhcC-----------------CcccCCCCEEEEEE-eCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhC
Q 001076 1074 EFMVNWDG-----------------LRTKDKERVLVLAA-TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE 1135 (1163)
Q Consensus 1074 ~LL~~Ldg-----------------l~~k~~~~VlVIaT-TN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~ 1135 (1163)
.-...+.. +....+..+++|++ |+.+..+++++++||. .+.+++++.++...|++.++.+.
T Consensus 291 ~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~~ 369 (615)
T TIGR02903 291 DKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEKI 369 (615)
T ss_pred hCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHHc
Confidence 21100000 00011234566654 5668889999999995 67899999999999999998875
Q ss_pred CCC-ChhhHHHHHHHc
Q 001076 1136 ELA-SDVDLEGIANMA 1150 (1163)
Q Consensus 1136 ~l~-~dvdl~~LA~~T 1150 (1163)
.+. ++..++.|+..+
T Consensus 370 ~v~ls~eal~~L~~ys 385 (615)
T TIGR02903 370 NVHLAAGVEELIARYT 385 (615)
T ss_pred CCCCCHHHHHHHHHCC
Confidence 532 344456666554
No 166
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.13 E-value=1.2e-09 Score=118.72 Aligned_cols=161 Identities=20% Similarity=0.344 Sum_probs=99.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCC
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1059 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL-----g~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r 1059 (1163)
..++||||+|+|||+|..++++++ +..++++++.++...+.......-..-|....+ ...+|+||+|+.+.++
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~-~~DlL~iDDi~~l~~~- 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR-SADLLIIDDIQFLAGK- 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC-TSSEEEEETGGGGTTH-
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh-cCCEEEEecchhhcCc-
Confidence 469999999999999999998875 577888988776544322111110112322223 4579999999988421
Q ss_pred CCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCC---CCHHHHhccCc--EEEecCCCHHHHHHHHHHHHhh
Q 001076 1060 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLPR--RLMVNLPDAPNREKIIRVILAK 1134 (1163)
Q Consensus 1060 ~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRFd~--vI~I~~Pd~eeR~eILk~ll~k 1134 (1163)
...++.+..+++.+.. ..+-+||++...|.. +++.+.+||.. ++.+..|+.+.|.+|++.....
T Consensus 113 --~~~q~~lf~l~n~~~~---------~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~ 181 (219)
T PF00308_consen 113 --QRTQEELFHLFNRLIE---------SGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKE 181 (219)
T ss_dssp --HHHHHHHHHHHHHHHH---------TTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHh---------hCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHH
Confidence 2234455555555542 134455555455544 56889998744 8999999999999999999988
Q ss_pred CCCC-ChhhHHHHHHHcCCCCHHHHH
Q 001076 1135 EELA-SDVDLEGIANMADGYSGSDLK 1159 (1163)
Q Consensus 1135 ~~l~-~dvdl~~LA~~TeGySgaDLk 1159 (1163)
.++. ++..++.|++...+ +..+|.
T Consensus 182 ~~~~l~~~v~~~l~~~~~~-~~r~L~ 206 (219)
T PF00308_consen 182 RGIELPEEVIEYLARRFRR-DVRELE 206 (219)
T ss_dssp TT--S-HHHHHHHHHHTTS-SHHHHH
T ss_pred hCCCCcHHHHHHHHHhhcC-CHHHHH
Confidence 7765 55557778877653 444443
No 167
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.11 E-value=1.7e-10 Score=131.42 Aligned_cols=143 Identities=15% Similarity=0.202 Sum_probs=98.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc--cccchH----------HHHHHHHHHHhccCCeEEEEccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK--WFGEGE----------KYVKAVFSLASKIAPSVVFVDEV 1052 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~--~~Ge~E----------~~Ir~lF~~A~k~~PsILfIDEI 1052 (1163)
++|||.||||||||++|+++|..++.+++++++...+.. ++|... ......+..|.+ .+.+|++|||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEechh
Confidence 579999999999999999999999999999988664432 444321 112234555555 4588999999
Q ss_pred cccccCCCCcchHHHHHHHHHH-HHHHhcCC--cccCCCCEEEEEEeCCCC------------CCCHHHHhccCcEEEec
Q 001076 1053 DSMLGRRENPGEHEAMRKMKNE-FMVNWDGL--RTKDKERVLVLAATNRPF------------DLDEAVVRRLPRRLMVN 1117 (1163)
Q Consensus 1053 D~L~g~r~s~~~~eal~~il~~-LL~~Ldgl--~~k~~~~VlVIaTTN~p~------------~Ld~aLlrRFd~vI~I~ 1117 (1163)
|+. .+..+..+..+++. -...+.+. ..+.+.+++||||+|... .+++++++||-.++.++
T Consensus 144 n~a-----~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~ 218 (327)
T TIGR01650 144 DAG-----RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLN 218 (327)
T ss_pred hcc-----CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCC
Confidence 966 33333333333331 00011111 111335799999999843 57899999997778999
Q ss_pred CCCHHHHHHHHHHHHh
Q 001076 1118 LPDAPNREKIIRVILA 1133 (1163)
Q Consensus 1118 ~Pd~eeR~eILk~ll~ 1133 (1163)
.|+.++-.+|+.....
T Consensus 219 Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 219 YLEHDNEAAIVLAKAK 234 (327)
T ss_pred CCCHHHHHHHHHhhcc
Confidence 9999999999987643
No 168
>PRK05642 DNA replication initiation factor; Validated
Probab=99.10 E-value=2.5e-09 Score=117.21 Aligned_cols=146 Identities=19% Similarity=0.277 Sum_probs=98.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCC
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1061 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s 1061 (1163)
..++|+||+|+|||+|++++++++ +..++++++.++... . ..+...... ..+|+||||+.+.+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~----~----~~~~~~~~~--~d~LiiDDi~~~~~~~-- 113 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR----G----PELLDNLEQ--YELVCLDDLDVIAGKA-- 113 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh----h----HHHHHhhhh--CCEEEEechhhhcCCh--
Confidence 579999999999999999999875 677888887776532 1 122222222 2589999999774321
Q ss_pred cchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCC---CCHHHHhcc--CcEEEecCCCHHHHHHHHHHHHhhCC
Q 001076 1062 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEE 1136 (1163)
Q Consensus 1062 ~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF--d~vI~I~~Pd~eeR~eILk~ll~k~~ 1136 (1163)
..++.+..+++.+. .+.+.+||+++..|.. +.+.+++|| ..++.+..|+.++|.++++......+
T Consensus 114 -~~~~~Lf~l~n~~~---------~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 114 -DWEEALFHLFNRLR---------DSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred -HHHHHHHHHHHHHH---------hcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 22334445555443 2234566666655533 358899998 46788899999999999996555544
Q ss_pred C-CChhhHHHHHHHcCC
Q 001076 1137 L-ASDVDLEGIANMADG 1152 (1163)
Q Consensus 1137 l-~~dvdl~~LA~~TeG 1152 (1163)
+ .++..++.|+++.+|
T Consensus 184 ~~l~~ev~~~L~~~~~~ 200 (234)
T PRK05642 184 LHLTDEVGHFILTRGTR 200 (234)
T ss_pred CCCCHHHHHHHHHhcCC
Confidence 4 356667888877765
No 169
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=9.8e-10 Score=135.95 Aligned_cols=184 Identities=21% Similarity=0.352 Sum_probs=139.1
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL----------g~pfi~I 1015 (1163)
..+|.++|.++.++.+.+.+.. +..++-+|.|+||+|||.++..+|.+. +..++.+
T Consensus 167 gklDPvIGRd~EI~r~iqIL~R--------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSR--------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhc--------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 3456789999999888887752 122456899999999999999999876 5678899
Q ss_pred eccccc--cccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcch-HHHHHHHHHHHHHHhcCCcccCCCCEEE
Q 001076 1016 SMSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1163)
Q Consensus 1016 d~seL~--s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~-~eal~~il~~LL~~Ldgl~~k~~~~VlV 1092 (1163)
|+..+. .+|-|+.|+.++.+..+..+..+.||||||||.+.|.....+. ..+.+ .|.-.+ .+..+.+
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaN----iLKPaL------ARGeL~~ 302 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAAN----LLKPAL------ARGELRC 302 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhh----hhHHHH------hcCCeEE
Confidence 998876 4688999999999999999999999999999999876554332 22332 222221 2356888
Q ss_pred EEEeCC-----CCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-----ChhhHHHHHHHcCCCC
Q 001076 1093 LAATNR-----PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGYS 1154 (1163)
Q Consensus 1093 IaTTN~-----p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-----~dvdl~~LA~~TeGyS 1154 (1163)
|++|.. ...-|.+|-||| ..|.+.-|+.++-..|++-+-.++... .|..+.+.+.+++-|-
T Consensus 303 IGATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI 373 (786)
T COG0542 303 IGATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYI 373 (786)
T ss_pred EEeccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhc
Confidence 888853 346789999999 578899999999999999987764322 4555666666665543
No 170
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.09 E-value=1.9e-10 Score=132.18 Aligned_cols=168 Identities=20% Similarity=0.286 Sum_probs=101.9
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCc--EEEEe
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GAN--FINIS 1016 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL-------g~p--fi~Id 1016 (1163)
..|.+|+|++++++.+.-.+.. . ...++||+|+||+|||++|+++++.+ +.+ +..+.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~----------~----~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAID----------P----GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhc----------c----CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 4688999999999988654321 1 12479999999999999999999998 332 21111
Q ss_pred c-ccc--------c---------------cccccch--HHHH-HH--HHHH--HhccCCeEEEEccccccccCCCCcchH
Q 001076 1017 M-SSI--------T---------------SKWFGEG--EKYV-KA--VFSL--ASKIAPSVVFVDEVDSMLGRRENPGEH 1065 (1163)
Q Consensus 1017 ~-seL--------~---------------s~~~Ge~--E~~I-r~--lF~~--A~k~~PsILfIDEID~L~g~r~s~~~~ 1065 (1163)
+ .++ . ...+|.. +..+ .+ .|.. ..+...++||||||+++ ++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl-----~~~~q 145 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL-----EDHIV 145 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC-----CHHHH
Confidence 0 000 0 0112210 0000 00 1110 01122369999999987 22223
Q ss_pred HHHHHHHHHHH--HHhcCCcccCCCCEEEEEEeCCCC-CCCHHHHhccCcEEEecCCCH-HHHHHHHHHHH
Q 001076 1066 EAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPDA-PNREKIIRVIL 1132 (1163)
Q Consensus 1066 eal~~il~~LL--~~Ldgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRFd~vI~I~~Pd~-eeR~eILk~ll 1132 (1163)
..+...+++-. ...+|.....+.++++|+|+|..+ .+.++++.||...+.++.|.. ++|.+|++...
T Consensus 146 ~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 146 DLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred HHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 33322222211 112343333457899999999754 689999999999999988876 89999998754
No 171
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2.9e-10 Score=126.54 Aligned_cols=179 Identities=21% Similarity=0.345 Sum_probs=113.1
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhh-hcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc-cccccch
Q 001076 951 IGALENVKDTLKELVMLPLQRPELF-CKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKWFGEG 1028 (1163)
Q Consensus 951 I~Gleevk~~L~e~V~lpl~~pelf-~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~-s~~~Ge~ 1028 (1163)
++|++.+|+.|.-++...+.|-... .+..+.-.-.+|||.||+|+|||.||+.+|+.++.||...|+..|. ..|+|+.
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGED 142 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGED 142 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchh
Confidence 6799999888765554322221111 0111111224699999999999999999999999999999998876 4688876
Q ss_pred HH-HHHHHHHHH----hccCCeEEEEccccccccCCCCcch-HH-HHHHHHHHHHHHhcCCc----c-----cCC-----
Q 001076 1029 EK-YVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGE-HE-AMRKMKNEFMVNWDGLR----T-----KDK----- 1087 (1163)
Q Consensus 1029 E~-~Ir~lF~~A----~k~~PsILfIDEID~L~g~r~s~~~-~e-al~~il~~LL~~Ldgl~----~-----k~~----- 1087 (1163)
-+ .+-++.+.| .+...+||||||||.+..+..++.- .. .-.-+.+.||..++|-. + .++
T Consensus 143 VENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iq 222 (408)
T COG1219 143 VENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQ 222 (408)
T ss_pred HHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEE
Confidence 44 445565544 2345699999999999866543211 00 01123445555554421 1 112
Q ss_pred ---CCEEEEEEeCC---------------------------------------C-----CCCCHHHHhccCcEEEecCCC
Q 001076 1088 ---ERVLVLAATNR---------------------------------------P-----FDLDEAVVRRLPRRLMVNLPD 1120 (1163)
Q Consensus 1088 ---~~VlVIaTTN~---------------------------------------p-----~~Ld~aLlrRFd~vI~I~~Pd 1120 (1163)
.+|++|+...- | +-|-|+|+-|++.+..+...+
T Consensus 223 vDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Ld 302 (408)
T COG1219 223 VDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELD 302 (408)
T ss_pred EcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcC
Confidence 35555543210 1 124467778999888888899
Q ss_pred HHHHHHHHH
Q 001076 1121 APNREKIIR 1129 (1163)
Q Consensus 1121 ~eeR~eILk 1129 (1163)
.+...+||.
T Consensus 303 e~aLv~ILt 311 (408)
T COG1219 303 EDALVQILT 311 (408)
T ss_pred HHHHHHHHh
Confidence 888877764
No 172
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.09 E-value=3.2e-10 Score=100.26 Aligned_cols=67 Identities=31% Similarity=0.486 Sum_probs=58.8
Q ss_pred eEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcCeecCCCceEEeeCCCEEEEc
Q 001076 154 FTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELVFS 224 (1163)
Q Consensus 154 ~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~~~~k~~~~~L~~gDev~f~ 224 (1163)
|+|||+..||+.|+++.+|..||.|...+. ..++|++. +.||| +|||+.+.++..+.|..||+|.|+
T Consensus 1 ~~iGR~~~~di~l~~~~iSr~Ha~i~~~~~---~~~~i~d~~s~ngt-~vng~~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPDCDIVLPDPSISRRHARISFDDD---GQFYIEDLGSTNGT-FVNGQRLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTTSSEEETSTTSSTTSEEEEEETT---EEEEEEESSSSS-E-EETTEEESSTSEEEE-TTEEEEET
T ss_pred CEEcCCCCCCEEECCHheeeeeeEEEEece---eeEEEEeCCCCCcE-EECCEEcCCCCEEECCCCCEEEcC
Confidence 799999999999999999999999997643 33899997 58888 799999999999999999999985
No 173
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.09 E-value=8.5e-10 Score=131.41 Aligned_cols=156 Identities=15% Similarity=0.274 Sum_probs=104.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCC
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE 1060 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~ 1060 (1163)
.++++||||+|+|||+|++++++++ +..++++++..+...+.......-...|...++ ...||+||||+.+.++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k~- 218 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGKG- 218 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCCh-
Confidence 3579999999999999999999887 688888887665443222111111123444333 46799999999874322
Q ss_pred CcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCC---CCCHHHHhccC--cEEEecCCCHHHHHHHHHHHHhhC
Q 001076 1061 NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKE 1135 (1163)
Q Consensus 1061 s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRFd--~vI~I~~Pd~eeR~eILk~ll~k~ 1135 (1163)
..++.+..+++.+.. ....+|++++..|. .+++.+++||. .++.+..|+.++|..|++..+...
T Consensus 219 --~~qeelf~l~N~l~~---------~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~ 287 (445)
T PRK12422 219 --ATQEEFFHTFNSLHT---------EGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEAL 287 (445)
T ss_pred --hhHHHHHHHHHHHHH---------CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHc
Confidence 223444455555442 12334444444443 56789999995 688899999999999999998876
Q ss_pred CCC-ChhhHHHHHHHcCC
Q 001076 1136 ELA-SDVDLEGIANMADG 1152 (1163)
Q Consensus 1136 ~l~-~dvdl~~LA~~TeG 1152 (1163)
++. ++..++.|+....+
T Consensus 288 ~~~l~~evl~~la~~~~~ 305 (445)
T PRK12422 288 SIRIEETALDFLIEALSS 305 (445)
T ss_pred CCCCCHHHHHHHHHhcCC
Confidence 643 45556667776654
No 174
>PRK06620 hypothetical protein; Validated
Probab=99.08 E-value=2.2e-09 Score=116.37 Aligned_cols=133 Identities=17% Similarity=0.241 Sum_probs=91.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcch
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1064 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~ 1064 (1163)
+.++||||+|+|||+|++++++..+..++... .. ....+ + ...+|+|||||.| .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~--~~-----------~~~~~----~-~~d~lliDdi~~~--------~ 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDI--FF-----------NEEIL----E-KYNAFIIEDIENW--------Q 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcchh--hh-----------chhHH----h-cCCEEEEeccccc--------h
Confidence 57999999999999999999998876443210 00 00111 1 2368999999965 1
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCC--CCHHHHhccC--cEEEecCCCHHHHHHHHHHHHhhCCC-CC
Q 001076 1065 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD--LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEEL-AS 1139 (1163)
Q Consensus 1065 ~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~--Ld~aLlrRFd--~vI~I~~Pd~eeR~eILk~ll~k~~l-~~ 1139 (1163)
...+..++|.+. +....+||+++..|.. + +.+++|+. .++.+..|+.+.+..+++..+...++ .+
T Consensus 99 ~~~lf~l~N~~~---------e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~ 168 (214)
T PRK06620 99 EPALLHIFNIIN---------EKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTIS 168 (214)
T ss_pred HHHHHHHHHHHH---------hcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 134444444443 1245677777655544 5 88999984 37999999999999999999886554 35
Q ss_pred hhhHHHHHHHcCCC
Q 001076 1140 DVDLEGIANMADGY 1153 (1163)
Q Consensus 1140 dvdl~~LA~~TeGy 1153 (1163)
+..++.|+....|-
T Consensus 169 ~ev~~~L~~~~~~d 182 (214)
T PRK06620 169 RQIIDFLLVNLPRE 182 (214)
T ss_pred HHHHHHHHHHccCC
Confidence 66678888877653
No 175
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=4.2e-09 Score=122.00 Aligned_cols=186 Identities=17% Similarity=0.142 Sum_probs=123.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------EEEE--
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------FINI-- 1015 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p-------fi~I-- 1015 (1163)
...+++++|++++.+.|...+.. .+.+..+||+||+|+|||++|+.+|+.+.+. ....
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~-------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE-------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc-------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 35788999999999999988753 2334579999999999999999999998551 1100
Q ss_pred --ecc-----------ccc--cccccc---------hHHHHHHHHHHHh----ccCCeEEEEccccccccCCCCcchHHH
Q 001076 1016 --SMS-----------SIT--SKWFGE---------GEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEA 1067 (1163)
Q Consensus 1016 --d~s-----------eL~--s~~~Ge---------~E~~Ir~lF~~A~----k~~PsILfIDEID~L~g~r~s~~~~ea 1067 (1163)
.|. ++. ....+. .-..++.+..... ....-||+|||+|.|-
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~----------- 154 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN----------- 154 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC-----------
Confidence 110 111 000000 0123333332222 2345699999999882
Q ss_pred HHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHH
Q 001076 1068 MRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIA 1147 (1163)
Q Consensus 1068 l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA 1147 (1163)
....+.|+..++.. +.+.++|..|+.+..+.+.+++|+ .++.+++|+.++-.++++....... .++..+..++
T Consensus 155 -~~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~ 227 (351)
T PRK09112 155 -RNAANAILKTLEEP----PARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALL 227 (351)
T ss_pred -HHHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHH
Confidence 22345566666542 245666666788888899999999 6999999999999999988543333 3345577888
Q ss_pred HHcCCCCHHHHHhh
Q 001076 1148 NMADGYSGSDLKVD 1161 (1163)
Q Consensus 1148 ~~TeGySgaDLk~L 1161 (1163)
..+.|.-..-+..+
T Consensus 228 ~~s~G~pr~Al~ll 241 (351)
T PRK09112 228 QRSKGSVRKALLLL 241 (351)
T ss_pred HHcCCCHHHHHHHH
Confidence 88888776555443
No 176
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=1.4e-10 Score=132.63 Aligned_cols=113 Identities=23% Similarity=0.360 Sum_probs=99.3
Q ss_pred CccceeccccCCCCceeeecceeEEccCCccceeecCCCCCccceEEEEe----------e-cCCcceEEEEEecCCceE
Q 001076 132 IPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRI----------E-NGGPSGALLEITGGKGEV 200 (1163)
Q Consensus 132 ~pW~rL~s~~~~~p~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~----------~-~~g~~~a~le~~~~~G~v 200 (1163)
.||+||+-..-..+++.+.+.+|||||+..||+.++.+.+|+.|-++... . .+.+..+||+|+++|||
T Consensus 44 ~~r~r~~~v~~~~~~~d~~nd~f~fGR~~~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~DhS~nGT- 122 (475)
T KOG0615|consen 44 KPRARLVGVRRGIKSIDLANDEFTFGRGDSCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDHSRNGT- 122 (475)
T ss_pred cchhhhcceeeccccceeccceEEecCCCcccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEecccCcc-
Confidence 38999999999999999999999999999999999999999888754433 2 34456899999999999
Q ss_pred EEcCeecCCCceEEeeCCCEEEEccCCCeeEEeeecCcccCCCCC
Q 001076 201 EVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDDTLAAPG 245 (1163)
Q Consensus 201 ~vNg~~~~k~~~~~L~~gDev~f~~~~~~ayifq~l~~~~~~~~~ 245 (1163)
+||-+.++||....|+|||||.++.+.+++++|.+++.+....+.
T Consensus 123 ~VN~e~i~k~~~r~lkN~dei~is~p~~~~~v~~~~s~d~~~~~p 167 (475)
T KOG0615|consen 123 FVNDEMIGKGLSRILKNGDEISISIPALKIFVFEDLSRDSSKVPP 167 (475)
T ss_pred cccHhHhhccccccccCCCEEEeccchhheeeeecccchhccCcc
Confidence 699999999999999999999999999999999998665544443
No 177
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.07 E-value=7.7e-10 Score=126.86 Aligned_cols=157 Identities=25% Similarity=0.380 Sum_probs=105.3
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc--cccccch
Q 001076 951 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT--SKWFGEG 1028 (1163)
Q Consensus 951 I~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~--s~~~Ge~ 1028 (1163)
+.|.++.+..+...+.. ..++||.||||+|||+||+++|..++.+|+++.|..-+ +..+|..
T Consensus 26 ~~g~~~~~~~~l~a~~~----------------~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 26 VVGDEEVIELALLALLA----------------GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeccHHHHHHHHHHHHc----------------CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCch
Confidence 55666666665554421 15799999999999999999999999999999986422 1222221
Q ss_pred HHHH----HH--------HHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCc-ccCCCCEEEEEE
Q 001076 1029 EKYV----KA--------VFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAA 1095 (1163)
Q Consensus 1029 E~~I----r~--------lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~-~k~~~~VlVIaT 1095 (1163)
.-.. .. +|.... +|+|+|||++. .+..+.++..++++....+.+.. ..-+.+++||+|
T Consensus 90 ~~~~~~~~~~~~~~~~gpl~~~~~----~ill~DEInra-----~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT 160 (329)
T COG0714 90 AYAALLLEPGEFRFVPGPLFAAVR----VILLLDEINRA-----PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIAT 160 (329)
T ss_pred hHhhhhccCCeEEEecCCcccccc----eEEEEeccccC-----CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEc
Confidence 1110 00 111111 49999999854 44455555555555444455555 455678999999
Q ss_pred eC-----CCCCCCHHHHhccCcEEEecCC-CHHHHHHHHHHHH
Q 001076 1096 TN-----RPFDLDEAVVRRLPRRLMVNLP-DAPNREKIIRVIL 1132 (1163)
Q Consensus 1096 TN-----~p~~Ld~aLlrRFd~vI~I~~P-d~eeR~eILk~ll 1132 (1163)
+| ....+++++++||...++++.| ..++...++....
T Consensus 161 ~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 161 QNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred cCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCc
Confidence 99 4567899999999989999999 4544555544443
No 178
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.07 E-value=7.5e-10 Score=127.69 Aligned_cols=167 Identities=18% Similarity=0.252 Sum_probs=104.9
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEec-
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------ANFINISM- 1017 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg-------~pfi~Id~- 1017 (1163)
..|.+|+|+++++..|...+..| ...+|||.|++|||||++|+++++.+. .||. .+.
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p--------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~ 78 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDP--------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPS 78 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCC--------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCC
Confidence 46899999999999997765421 225799999999999999999987762 2332 111
Q ss_pred -cc-----cccc---------------c----ccchHHH------HHHHHHHHh---------ccCCeEEEEcccccccc
Q 001076 1018 -SS-----ITSK---------------W----FGEGEKY------VKAVFSLAS---------KIAPSVVFVDEVDSMLG 1057 (1163)
Q Consensus 1018 -se-----L~s~---------------~----~Ge~E~~------Ir~lF~~A~---------k~~PsILfIDEID~L~g 1057 (1163)
++ +... + .+.++.. +...|.... +...++||||||++|
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL-- 156 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL-- 156 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC--
Confidence 00 0000 0 1111111 111122111 223479999999988
Q ss_pred CCCCcchHHHHHHHHHHHHHHh--cCCcccCCCCEEEEEEeCCCC-CCCHHHHhccCcEEEecCCC-HHHHHHHHHHHH
Q 001076 1058 RRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPD-APNREKIIRVIL 1132 (1163)
Q Consensus 1058 ~r~s~~~~eal~~il~~LL~~L--dgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRFd~vI~I~~Pd-~eeR~eILk~ll 1132 (1163)
++..+..+...+.+-...+ +|....-+.++++|+|.|..+ .+.+.++.||...+.+..|. .+.|.+|++...
T Consensus 157 ---~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 157 ---DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred ---CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhh
Confidence 3333333322222211112 343333456899999988765 69999999999999999997 699999998753
No 179
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=6.8e-09 Score=118.28 Aligned_cols=172 Identities=18% Similarity=0.290 Sum_probs=117.0
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------EEEEecc
Q 001076 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN--------FINISMS 1018 (1163)
Q Consensus 947 tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p--------fi~Id~s 1018 (1163)
+|++|+|++.+++.+...+.. .+.++.+||+||+|+|||++|+++|+.+.+. ++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~ 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc
Confidence 588999999999999887742 2334578999999999999999999987432 2233221
Q ss_pred ccccccccchHHHHHHHHHHHhc----cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEE
Q 001076 1019 SITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1094 (1163)
Q Consensus 1019 eL~s~~~Ge~E~~Ir~lF~~A~k----~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIa 1094 (1163)
.+..+ .-..++.+...+.. ...-|++||++|.|- ....|.|+..++. .+..+++|.
T Consensus 69 --~~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~------------~~a~naLLK~LEe----pp~~t~~il 128 (313)
T PRK05564 69 --NKKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT------------EQAQNAFLKTIEE----PPKGVFIIL 128 (313)
T ss_pred --cCCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhcC------------HHHHHHHHHHhcC----CCCCeEEEE
Confidence 11111 12235555544433 234699999999872 2234566666654 235567777
Q ss_pred EeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCH
Q 001076 1095 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1155 (1163)
Q Consensus 1095 TTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySg 1155 (1163)
+|+.++.+.+++++|+ .++.|..|+.++-..+++..+.. .++..+..++..+.|-.+
T Consensus 129 ~~~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 129 LCENLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKYND---IKEEEKKSAIAFSDGIPG 185 (313)
T ss_pred EeCChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHhcC---CCHHHHHHHHHHcCCCHH
Confidence 7788899999999999 68999999999887777655431 234456667777776444
No 180
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.04 E-value=6.3e-09 Score=112.55 Aligned_cols=181 Identities=22% Similarity=0.318 Sum_probs=129.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~ 1021 (1163)
...+.+|.|.+.+++.|.+-... |.+ ..|..+|||+|..||||++|++|+.++. +..++.|+-.++.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~-------F~~---G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQ-------FAE---GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHH-------HHc---CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 46788999999999999876654 322 3577899999999999999999999888 6778888866653
Q ss_pred cccccchHHHHHHHHHHHhcc-CCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCC
Q 001076 1022 SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1163)
Q Consensus 1022 s~~~Ge~E~~Ir~lF~~A~k~-~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1163)
.+-.++...+.. ..-|||+|++- | ..+ ...+..|...++|-....+.+|+|.||+|+..
T Consensus 126 ---------~Lp~l~~~Lr~~~~kFIlFcDDLS--F----e~g-----d~~yK~LKs~LeG~ve~rP~NVl~YATSNRRH 185 (287)
T COG2607 126 ---------TLPDLVELLRARPEKFILFCDDLS--F----EEG-----DDAYKALKSALEGGVEGRPANVLFYATSNRRH 185 (287)
T ss_pred ---------hHHHHHHHHhcCCceEEEEecCCC--C----CCC-----chHHHHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence 233445444443 35799999984 1 111 11233455667887777789999999999854
Q ss_pred CCCH----------------------HHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCCC-h--hhHHHHHHHc--CCC
Q 001076 1101 DLDE----------------------AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELAS-D--VDLEGIANMA--DGY 1153 (1163)
Q Consensus 1101 ~Ld~----------------------aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~-d--vdl~~LA~~T--eGy 1153 (1163)
.|.+ .+-.||+..+.|.+++.++-.+|+.++.+..++.- + .+.+++.--| .|-
T Consensus 186 Ll~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~R 265 (287)
T COG2607 186 LLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGR 265 (287)
T ss_pred cccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4332 23349999999999999999999999999887653 3 3344444333 255
Q ss_pred CH
Q 001076 1154 SG 1155 (1163)
Q Consensus 1154 Sg 1155 (1163)
||
T Consensus 266 SG 267 (287)
T COG2607 266 SG 267 (287)
T ss_pred cc
Confidence 55
No 181
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.03 E-value=7.6e-10 Score=116.03 Aligned_cols=114 Identities=26% Similarity=0.350 Sum_probs=74.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC----cEEEEeccccccccccchHHHHHHHHHHH----hccCCeEEEEccccc
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEAGA----NFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDS 1054 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eLg~----pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A----~k~~PsILfIDEID~ 1054 (1163)
|...+||.||+|+|||+||+++|+.+.. +++.+||+++... +..+..+..++..+ ......||||||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4567999999999999999999999996 9999999987651 11111222222111 111224999999998
Q ss_pred cccCCCCcchHHHHHHHHHHHHHHhcCCcccC-------CCCEEEEEEeCCC
Q 001076 1055 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD-------KERVLVLAATNRP 1099 (1163)
Q Consensus 1055 L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~-------~~~VlVIaTTN~p 1099 (1163)
.... ........-..+.+.|+..|++....+ -.++++|+|+|--
T Consensus 80 a~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred cccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 8643 222223333467778888876543321 2589999999863
No 182
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=6.8e-09 Score=120.89 Aligned_cols=182 Identities=19% Similarity=0.160 Sum_probs=121.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-----------E
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-----------I 1013 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pf-----------i 1013 (1163)
..++++|+|++.+++.|...+.. .+.+..+||+||+|+||+++|.++|+.+-+.- .
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS-------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 45789999999999999988753 23446799999999999999999999883211 0
Q ss_pred EE----ec-----------cccccccc---cc--------hHHHHHHHHHHHh----ccCCeEEEEccccccccCCCCcc
Q 001076 1014 NI----SM-----------SSITSKWF---GE--------GEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPG 1063 (1163)
Q Consensus 1014 ~I----d~-----------seL~s~~~---Ge--------~E~~Ir~lF~~A~----k~~PsILfIDEID~L~g~r~s~~ 1063 (1163)
.+ .| +++.--.. +. .-..|+.+-..+. ...+.||+|||+|.+-
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC-------
Confidence 00 00 11110000 10 1123555444433 3357899999999772
Q ss_pred hHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhH
Q 001076 1064 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDL 1143 (1163)
Q Consensus 1064 ~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl 1143 (1163)
....+.|+..++.. +...++|.+|+.++.+.+.+++|+ ..+.|++|+.++-.+++...... ..+..+
T Consensus 155 -----~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~ 221 (365)
T PRK07471 155 -----ANAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPR 221 (365)
T ss_pred -----HHHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhccc---CCHHHH
Confidence 23445566666542 245677888988888999999998 68999999999998888775422 223334
Q ss_pred HHHHHHcCCCCHHHHH
Q 001076 1144 EGIANMADGYSGSDLK 1159 (1163)
Q Consensus 1144 ~~LA~~TeGySgaDLk 1159 (1163)
..++..+.|--+.-+.
T Consensus 222 ~~l~~~s~Gsp~~Al~ 237 (365)
T PRK07471 222 AALAALAEGSVGRALR 237 (365)
T ss_pred HHHHHHcCCCHHHHHH
Confidence 6778888776654443
No 183
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.01 E-value=3.7e-09 Score=126.26 Aligned_cols=154 Identities=18% Similarity=0.276 Sum_probs=103.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccchHH---HHHHHHHHHhccCCeEEEEccccccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEK---YVKAVFSLASKIAPSVVFVDEVDSML 1056 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL-----g~pfi~Id~seL~s~~~Ge~E~---~Ir~lF~~A~k~~PsILfIDEID~L~ 1056 (1163)
.+++|+|++|+|||+|++++++++ +..++++++.++...+...... .+. -|..-+ ....+|+||||+.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~-~~~~~~-~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIE-QFKNEI-CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHH-HHHHHh-ccCCEEEEecccccc
Confidence 569999999999999999999865 5778888887766544322111 111 122222 246799999999774
Q ss_pred cCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeC-CCC---CCCHHHHhccC--cEEEecCCCHHHHHHHHHH
Q 001076 1057 GRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN-RPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRV 1130 (1163)
Q Consensus 1057 g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN-~p~---~Ld~aLlrRFd--~vI~I~~Pd~eeR~eILk~ 1130 (1163)
++. ..++.+..+++.+... .. .+|.|++ .|. .+++.+++||. .++.+..|+.++|.+|++.
T Consensus 220 ~k~---~~~e~lf~l~N~~~~~---------~k-~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 220 YKE---KTNEIFFTIFNNFIEN---------DK-QLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCH---HHHHHHHHHHHHHHHc---------CC-cEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 221 2334455555554321 22 3444554 443 45688999984 5788899999999999999
Q ss_pred HHhhCCC---CChhhHHHHHHHcCCC
Q 001076 1131 ILAKEEL---ASDVDLEGIANMADGY 1153 (1163)
Q Consensus 1131 ll~k~~l---~~dvdl~~LA~~TeGy 1153 (1163)
.+...++ .++..+..|+..+.|-
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~gd 312 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSDD 312 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCCC
Confidence 9987553 4566678888877763
No 184
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.01 E-value=8.4e-09 Score=108.77 Aligned_cols=145 Identities=18% Similarity=0.200 Sum_probs=100.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEeccccccccccchHHHHHHHHHH
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFSL 1038 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eLg~p------------------------fi~Id~seL~s~~~Ge~E~~Ir~lF~~ 1038 (1163)
.+..+||+||+|+|||++|+.+++.+... +..+.... .. .....++.+...
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHHH
Confidence 34679999999999999999999998432 22221110 01 112355555555
Q ss_pred Hhc----cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEE
Q 001076 1039 ASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRL 1114 (1163)
Q Consensus 1039 A~k----~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI 1114 (1163)
+.. ....||+|||+|.|. ....+.|+..++.. +...++|++|+.+..+.+++++|+ .++
T Consensus 88 ~~~~~~~~~~kviiide~~~l~------------~~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~sr~-~~~ 150 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMN------------EAAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRSRC-QVL 150 (188)
T ss_pred HccCcccCCeEEEEEechhhhC------------HHHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHhhc-EEe
Confidence 544 345699999999883 12345566666542 245677777877789999999999 689
Q ss_pred EecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCC
Q 001076 1115 MVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYS 1154 (1163)
Q Consensus 1115 ~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGyS 1154 (1163)
.+.+|+.++..++++.. ++ ++..+..|+..+.|.-
T Consensus 151 ~~~~~~~~~~~~~l~~~----gi-~~~~~~~i~~~~~g~~ 185 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ----GI-SEEAAELLLALAGGSP 185 (188)
T ss_pred eCCCCCHHHHHHHHHHc----CC-CHHHHHHHHHHcCCCc
Confidence 99999999998888776 33 4566888888888753
No 185
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=98.99 E-value=1.8e-09 Score=101.40 Aligned_cols=97 Identities=25% Similarity=0.418 Sum_probs=81.8
Q ss_pred cceeccccC--CCCceeeec-ceeEEccCCcc-ceeecCCCCCccceEEEEeecCCcceEEEEEecCCceEEEcCeecCC
Q 001076 134 WARLISQCS--QNSHLSMTG-AVFTVGHNRQC-DLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPK 209 (1163)
Q Consensus 134 W~rL~s~~~--~~p~~~i~~-~~~t~G~~~~c-d~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~~~~G~v~vNg~~~~k 209 (1163)
|+.|..+.. ..+.+.|.. ..|+|||+..| |+.|.++.+|..||.|.....+ ...+++..+.||+ +|||+.+.+
T Consensus 1 ~~~L~~~~~~~~~~~~~l~~~~~~~iGr~~~~~~i~l~~~~iS~~H~~i~~~~~~--~~~~~~~~s~~g~-~vn~~~~~~ 77 (102)
T cd00060 1 VPRLVVLSGDASGRRYYLDPGGTYTIGRDSDNCDIVLDDPSVSRRHAVIRYDGDG--GVVLIDLGSTNGT-FVNGQRVSP 77 (102)
T ss_pred CeEEEEecCCCceeEEEECCCCeEEECcCCCcCCEEcCCCCeeCcceEEEEcCCC--CEEEEECCCCCCe-EECCEECCC
Confidence 566777765 567888888 99999999999 9999999999999999976433 3478889999999 699999999
Q ss_pred CceEEeeCCCEEEEccCCCeeEEee
Q 001076 210 DSQVVLRGGDELVFSPSGKHSYIFQ 234 (1163)
Q Consensus 210 ~~~~~L~~gDev~f~~~~~~ayifq 234 (1163)
+.+++|..||+|.|+. +.+.|.|+
T Consensus 78 ~~~~~l~~gd~i~ig~-~~~~~~~~ 101 (102)
T cd00060 78 GEPVRLRDGDVIRLGN-TSISFRFE 101 (102)
T ss_pred CCcEECCCCCEEEECC-eEEEEEEe
Confidence 9999999999999976 45555554
No 186
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.99 E-value=4e-09 Score=101.23 Aligned_cols=127 Identities=33% Similarity=0.464 Sum_probs=83.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEeccccccc--------------cccchHHHHHHHHHHHhccCCeEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSITSK--------------WFGEGEKYVKAVFSLASKIAPSVV 1047 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~p---fi~Id~seL~s~--------------~~Ge~E~~Ir~lF~~A~k~~PsIL 1047 (1163)
..++|+||||+|||++++.+|..+... ++.+++...... ...........++..++...+.||
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 579999999999999999999999765 888887664322 122345567788899998889999
Q ss_pred EEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCC-CCCCCHHHHhccCcEEEecCC
Q 001076 1048 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-PFDLDEAVVRRLPRRLMVNLP 1119 (1163)
Q Consensus 1048 fIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~-p~~Ld~aLlrRFd~vI~I~~P 1119 (1163)
||||++.+..... ............... ......+.+|+++|. ....+..+..|++.++.+..+
T Consensus 83 iiDei~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAEQ-----EALLLLLEELRLLLL---LKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHHH-----HHHHHhhhhhHHHHH---HHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 9999998852211 111000000000000 012256788888886 444555666688888877654
No 187
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.9e-10 Score=127.65 Aligned_cols=188 Identities=16% Similarity=0.132 Sum_probs=133.1
Q ss_pred eeeecCCCCCCCCCCCCC---CCCCCc-ccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcC-
Q 001076 645 GVRFDRSIPEGNNLGGFC---EDDHGF-FCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG- 719 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~~~c---~~~~~f-f~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~- 719 (1163)
||..=+|.++|++|-..- ..+-.| ++..+++ -++.-||.-|+|+.-|.-+.+ .+|.|||+||||.+..+
T Consensus 168 g~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~l---v~kyiGEsaRlIRemf~yA~~---~~pciifmdeiDAigGRr 241 (388)
T KOG0651|consen 168 GLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSAL---VDKYIGESARLIRDMFRYARE---VIPCIIFMDEIDAIGGRR 241 (388)
T ss_pred eeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhh---hhhhcccHHHHHHHHHHHHhh---hCceEEeehhhhhhccEE
Confidence 444455889999986211 112223 3334665 388999999999999888877 99999999999995442
Q ss_pred ------Ch-hhHHHHHHHHhcCC-----CCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCcccccccc
Q 001076 720 ------NN-DAYGALKSKLENLP-----SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRS 787 (1163)
Q Consensus 720 ------~~-~~~~~i~s~L~~L~-----g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~ 787 (1163)
++ ++-..|-..|..+. ++|=+|.++|++|. |||
T Consensus 242 ~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdt----------------------Ldp------------- 286 (388)
T KOG0651|consen 242 FSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDT----------------------LDP------------- 286 (388)
T ss_pred eccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccc----------------------cch-------------
Confidence 22 22223333334444 49999999997665 454
Q ss_pred ccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhh-hhcCCCCcccccchhhcccCCc
Q 001076 788 KETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLT 864 (1163)
Q Consensus 788 ~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~-l~~~~L~~vdLeeLa~~tkg~s 864 (1163)
||+| |.+|-++++||.+.+|..|++||.. +...+- .+-+++.....+|+
T Consensus 287 --------------------------aLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Ge--id~eaivK~~d~f~ 338 (388)
T KOG0651|consen 287 --------------------------ALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGE--IDDEAILKLVDGFN 338 (388)
T ss_pred --------------------------hhcCCccccceeccCCcchhhceeeEeecccccccccc--ccHHHHHHHHhccC
Confidence 8999 9999999999999999999999987 444332 22456667778999
Q ss_pred hhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhhhhhhhh
Q 001076 865 TEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKS 916 (1163)
Q Consensus 865 gadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~dF~~al~eikp 916 (1163)
|+|++..|++|-.+++... ...+...+|+.+..++..
T Consensus 339 gad~rn~~tEag~Fa~~~~---------------~~~vl~Ed~~k~vrk~~~ 375 (388)
T KOG0651|consen 339 GADLRNVCTEAGMFAIPEE---------------RDEVLHEDFMKLVRKQAD 375 (388)
T ss_pred hHHHhhhcccccccccchh---------------hHHHhHHHHHHHHHHHHH
Confidence 9999999999998887422 223456777777555543
No 188
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3.1e-09 Score=119.16 Aligned_cols=69 Identities=29% Similarity=0.342 Sum_probs=53.1
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS 1018 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~s 1018 (1163)
.|+|++++++.+.-++..-.++..+-...+-.-.|++||..||+|+|||.+|+.+|+..++||+.+-..
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEAT 84 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEAT 84 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEee
Confidence 378999999988777665444443333332234568999999999999999999999999999887754
No 189
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.95 E-value=5.5e-10 Score=111.61 Aligned_cols=112 Identities=25% Similarity=0.378 Sum_probs=69.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc------cccccc--hHHHHHHHHHHHhccCCeEEEEcccccccc
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT------SKWFGE--GEKYVKAVFSLASKIAPSVVFVDEVDSMLG 1057 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~------s~~~Ge--~E~~Ir~lF~~A~k~~PsILfIDEID~L~g 1057 (1163)
+|||+||||+|||+||+++|+.++.+++.+.+.... +.+.-. ........+..+.+ .+.|+|||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccC--
Confidence 589999999999999999999999999998876522 222110 00000011111111 5689999999855
Q ss_pred CCCCcchHHHHHHHHHHHHHHhcCCccc---------CCC------CEEEEEEeCCCC----CCCHHHHhcc
Q 001076 1058 RRENPGEHEAMRKMKNEFMVNWDGLRTK---------DKE------RVLVLAATNRPF----DLDEAVVRRL 1110 (1163)
Q Consensus 1058 ~r~s~~~~eal~~il~~LL~~Ldgl~~k---------~~~------~VlVIaTTN~p~----~Ld~aLlrRF 1110 (1163)
...++..++..++.-... ... ++.+|+|+|... .++++|++||
T Consensus 78 ----------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 78 ----------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ----------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 133444444444322111 111 399999999988 9999999998
No 190
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=1.4e-08 Score=116.21 Aligned_cols=180 Identities=13% Similarity=0.203 Sum_probs=121.3
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------EEEEe
Q 001076 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------FINIS 1016 (1163)
Q Consensus 947 tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p----------fi~Id 1016 (1163)
.|++|+|++.+++.|...+.. .+-+..+||+||+|+||+++|.++|+.+-+. +...+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 478999999999999998853 2334689999999999999999999987322 11122
Q ss_pred cccccccc-----ccc--------------------hHHHHHHHHHHHhc----cCCeEEEEccccccccCCCCcchHHH
Q 001076 1017 MSSITSKW-----FGE--------------------GEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEA 1067 (1163)
Q Consensus 1017 ~seL~s~~-----~Ge--------------------~E~~Ir~lF~~A~k----~~PsILfIDEID~L~g~r~s~~~~ea 1067 (1163)
.+++.--. -|. .-..++.+...+.. ....|++||++|.|-
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~----------- 137 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN----------- 137 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-----------
Confidence 22222000 010 01235555544443 245799999999882
Q ss_pred HHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHH
Q 001076 1068 MRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIA 1147 (1163)
Q Consensus 1068 l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA 1147 (1163)
....|.|+..++.. + +.++|.+|+.++.|.+++++|+ .++.|..|+.++..++++........ +.+...++
T Consensus 138 -~~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 138 -EAAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred -HHHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 22345566666543 2 3467777888999999999998 78999999999999988876533221 22357788
Q ss_pred HHcCCCCHHHHH
Q 001076 1148 NMADGYSGSDLK 1159 (1163)
Q Consensus 1148 ~~TeGySgaDLk 1159 (1163)
..+.|--+.-+.
T Consensus 209 ~~a~Gs~~~al~ 220 (314)
T PRK07399 209 ALAQGSPGAAIA 220 (314)
T ss_pred HHcCCCHHHHHH
Confidence 888876665443
No 191
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.93 E-value=3.7e-09 Score=123.90 Aligned_cols=160 Identities=23% Similarity=0.296 Sum_probs=111.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 001076 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 1020 (1163)
Q Consensus 944 ~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL 1020 (1163)
....+.+|+|...++.++.+.|... ......|||.|.+||||-.+|++|-+.. +-||+.+||+.+
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~V------------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAl 285 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEVV------------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAAL 285 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHHH------------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeecccc
Confidence 3567789999999999998888641 1223579999999999999999998777 689999999774
Q ss_pred -----ccccccchHHHHHHHHHHHhccC--------CeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCC
Q 001076 1021 -----TSKWFGEGEKYVKAVFSLASKIA--------PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 1087 (1163)
Q Consensus 1021 -----~s~~~Ge~E~~Ir~lF~~A~k~~--------PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~ 1087 (1163)
.+..|| +.+..|.-|.... .+.||+|||..| +...|..+-+++++--..--|-...-+
T Consensus 286 PesLlESELFG----HeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel-----PL~lQaKLLRvLQegEieRvG~~r~ik 356 (550)
T COG3604 286 PESLLESELFG----HEKGAFTGAINTRRGRFELADGGTLFLDEIGEL-----PLALQAKLLRVLQEGEIERVGGDRTIK 356 (550)
T ss_pred chHHHHHHHhc----ccccccccchhccCcceeecCCCeEechhhccC-----CHHHHHHHHHHHhhcceeecCCCceeE
Confidence 345555 5566666665443 369999999977 445555666666654332223333334
Q ss_pred CCEEEEEEeCCC-------CCCCHHHHhccCcEEEecCCCHHHHH
Q 001076 1088 ERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE 1125 (1163)
Q Consensus 1088 ~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~I~~Pd~eeR~ 1125 (1163)
..|.|||+||+- ..+-..+.-|+ .++.+.+|...+|.
T Consensus 357 VDVRiIAATNRDL~~~V~~G~FRaDLYyRL-sV~Pl~lPPLRER~ 400 (550)
T COG3604 357 VDVRVIAATNRDLEEMVRDGEFRADLYYRL-SVFPLELPPLRERP 400 (550)
T ss_pred EEEEEEeccchhHHHHHHcCcchhhhhhcc-cccccCCCCcccCC
Confidence 689999999972 23333444466 46777888877764
No 192
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.93 E-value=1.1e-08 Score=120.73 Aligned_cols=142 Identities=23% Similarity=0.285 Sum_probs=87.7
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--cE-----EEEec----
Q 001076 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NF-----INISM---- 1017 (1163)
Q Consensus 949 ddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~--pf-----i~Id~---- 1017 (1163)
+++.+.+...+.+...+.. .++++|+||||||||++|+.+|..+.. .+ +.+..
T Consensus 175 ~d~~i~e~~le~l~~~L~~----------------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----------------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----------------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 3455556666666555431 258999999999999999999998842 22 22221
Q ss_pred ccccccc----ccc--hHHHHHHHHHHHhcc--CCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCC-------
Q 001076 1018 SSITSKW----FGE--GEKYVKAVFSLASKI--APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL------- 1082 (1163)
Q Consensus 1018 seL~s~~----~Ge--~E~~Ir~lF~~A~k~--~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl------- 1082 (1163)
.+++..+ .|. ....+.+++..|... .|.|||||||++- + +.+++.+++..++.-
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa-----n------i~kiFGel~~lLE~~~rg~~~~ 307 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA-----N------LSKVFGEVMMLMEHDKRGENWS 307 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhcc-----C------HHHhhhhhhhhccccccccccc
Confidence 1122111 110 012334445566654 4799999999854 1 233445555544410
Q ss_pred -----------cccCCCCEEEEEEeCCCC----CCCHHHHhccCcEEEecC
Q 001076 1083 -----------RTKDKERVLVLAATNRPF----DLDEAVVRRLPRRLMVNL 1118 (1163)
Q Consensus 1083 -----------~~k~~~~VlVIaTTN~p~----~Ld~aLlrRFd~vI~I~~ 1118 (1163)
.-.-+.++.||||+|..+ .+|.+|+||| ..|.+.+
T Consensus 308 v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF-~fi~i~p 357 (459)
T PRK11331 308 VPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRF-SFIDIEP 357 (459)
T ss_pred eeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhh-heEEecC
Confidence 012357899999999876 7999999999 4566654
No 193
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.92 E-value=2.4e-09 Score=132.84 Aligned_cols=167 Identities=23% Similarity=0.343 Sum_probs=103.3
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh------------------
Q 001076 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------------------ 1008 (1163)
Q Consensus 947 tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL------------------ 1008 (1163)
.|.+|+|++.++..|.-....+ ...+|||.|++|||||++|++|++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~--------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~ 67 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP--------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDP 67 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC--------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCc
Confidence 3778999999998876544321 11479999999999999999999988
Q ss_pred -----------------CCcEEEEeccccccccccch--HHHHHH---HHH--HHhccCCeEEEEccccccccCCCCcch
Q 001076 1009 -----------------GANFINISMSSITSKWFGEG--EKYVKA---VFS--LASKIAPSVVFVDEVDSMLGRRENPGE 1064 (1163)
Q Consensus 1009 -----------------g~pfi~Id~seL~s~~~Ge~--E~~Ir~---lF~--~A~k~~PsILfIDEID~L~g~r~s~~~ 1064 (1163)
..||+.+.+.......+|.. +..+.. .+. .......+|||||||+.| +...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l-----~~~~ 142 (633)
T TIGR02442 68 EEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLL-----DDHL 142 (633)
T ss_pred cccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhC-----CHHH
Confidence 35677766554444444532 111110 000 001113369999999987 2222
Q ss_pred HHHHHHHHHHHH--HHhcCCcccCCCCEEEEEEeCCC-CCCCHHHHhccCcEEEecCCC-HHHHHHHHHHHH
Q 001076 1065 HEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRP-FDLDEAVVRRLPRRLMVNLPD-APNREKIIRVIL 1132 (1163)
Q Consensus 1065 ~eal~~il~~LL--~~Ldgl~~k~~~~VlVIaTTN~p-~~Ld~aLlrRFd~vI~I~~Pd-~eeR~eILk~ll 1132 (1163)
+..+..++++-. ...+|.....+.+++||+|+|.. ..|.++|+.||+.+|.+..|. .+++.++++..+
T Consensus 143 q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 143 VDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred HHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHH
Confidence 222222221110 01122222334679999999964 468899999999888887664 677788877643
No 194
>PRK09087 hypothetical protein; Validated
Probab=98.91 E-value=1.6e-08 Score=110.53 Aligned_cols=137 Identities=19% Similarity=0.217 Sum_probs=93.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcch
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1064 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~ 1064 (1163)
+.++|+||+|+|||+|++++++..++.++... .+.. ..+..+ . ..+|+||||+.+- ..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~--~~~~-------~~~~~~----~---~~~l~iDDi~~~~------~~ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPN--EIGS-------DAANAA----A---EGPVLIEDIDAGG------FD 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHH--Hcch-------HHHHhh----h---cCeEEEECCCCCC------CC
Confidence 45999999999999999999988766644332 2111 111111 1 1589999999662 12
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCC---CCHHHHhccC--cEEEecCCCHHHHHHHHHHHHhhCCCC-
Q 001076 1065 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA- 1138 (1163)
Q Consensus 1065 ~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRFd--~vI~I~~Pd~eeR~eILk~ll~k~~l~- 1138 (1163)
++.+..+++.+.. ..+.+||+++..|.. ..+.+++||. .++.+..|+.+.|.+|++..+...++.
T Consensus 103 ~~~lf~l~n~~~~---------~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 ETGLFHLINSVRQ---------AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred HHHHHHHHHHHHh---------CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 3445555555542 134566666554432 3578999984 689999999999999999999886653
Q ss_pred ChhhHHHHHHHcCC
Q 001076 1139 SDVDLEGIANMADG 1152 (1163)
Q Consensus 1139 ~dvdl~~LA~~TeG 1152 (1163)
++..++.|+++..|
T Consensus 174 ~~ev~~~La~~~~r 187 (226)
T PRK09087 174 DPHVVYYLVSRMER 187 (226)
T ss_pred CHHHHHHHHHHhhh
Confidence 66678888888774
No 195
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.90 E-value=9.4e-09 Score=110.52 Aligned_cols=183 Identities=22% Similarity=0.284 Sum_probs=122.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CC----cEEEEeccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GA----NFINISMSS 1019 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL-g~----pfi~Id~se 1019 (1163)
...+.||+|.++..+.+.-+... + .-++++|.||||+|||+-+.++|+++ |- -+..++.++
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~----------g----nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASd 88 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKE----------G----NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASD 88 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHc----------C----CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcc
Confidence 34578999999999988766532 2 12589999999999999999999998 42 346677665
Q ss_pred cccccccchHHHHHHHHHHHhc-cC---CeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEE
Q 001076 1020 ITSKWFGEGEKYVKAVFSLASK-IA---PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1095 (1163)
Q Consensus 1020 L~s~~~Ge~E~~Ir~lF~~A~k-~~---PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaT 1095 (1163)
-.+ +......+ ..|..-+- .+ ..||++||.|++ ..+.++++++.+...- ....+..+
T Consensus 89 eRG--IDvVRn~I-K~FAQ~kv~lp~grhKIiILDEADSM-----T~gAQQAlRRtMEiyS-----------~ttRFala 149 (333)
T KOG0991|consen 89 ERG--IDVVRNKI-KMFAQKKVTLPPGRHKIIILDEADSM-----TAGAQQALRRTMEIYS-----------NTTRFALA 149 (333)
T ss_pred ccc--cHHHHHHH-HHHHHhhccCCCCceeEEEeeccchh-----hhHHHHHHHHHHHHHc-----------ccchhhhh
Confidence 322 11111122 23433322 23 359999999998 3567788888766432 23567788
Q ss_pred eCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCHHHHHhh
Q 001076 1096 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKVD 1161 (1163)
Q Consensus 1096 TN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySgaDLk~L 1161 (1163)
+|..+.+-+.+.+|+ .++.+...+..+...-+....+.+++. .+.-++.|.-.++|--...|.+|
T Consensus 150 CN~s~KIiEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnL 215 (333)
T KOG0991|consen 150 CNQSEKIIEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNL 215 (333)
T ss_pred hcchhhhhhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHH
Confidence 999998888899987 566677777777666666666555543 45557777777776555444443
No 196
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.90 E-value=1.9e-09 Score=127.70 Aligned_cols=159 Identities=29% Similarity=0.377 Sum_probs=113.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc-
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI- 1020 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL- 1020 (1163)
..+|++|+|.......+.+.+.. +......|||.|.+||||..+|++|-+.. +.||+.+||+.+
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr------------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR------------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh------------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 46899999999998888877643 12334679999999999999999998776 789999999763
Q ss_pred ----ccccccchHHHHHHHHHHHhcc---------CCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCC
Q 001076 1021 ----TSKWFGEGEKYVKAVFSLASKI---------APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 1087 (1163)
Q Consensus 1021 ----~s~~~Ge~E~~Ir~lF~~A~k~---------~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~ 1087 (1163)
.+.+|| +.+..|.-|.+. ..+-||||||..| +...|..+.+++++--..--|-...-+
T Consensus 309 e~LlESELFG----ye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem-----pl~LQaKLLRVLQEkei~rvG~t~~~~ 379 (560)
T COG3829 309 ETLLESELFG----YEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM-----PLPLQAKLLRVLQEKEIERVGGTKPIP 379 (560)
T ss_pred HHHHHHHHhC----cCCccccccccCCCCcceeeccCCeEEehhhccC-----CHHHHHHHHHHHhhceEEecCCCCcee
Confidence 455666 444556666553 2368999999987 334455555566554433333333345
Q ss_pred CCEEEEEEeCCC-------CCCCHHHHhccCcEEEecCCCHHHHH
Q 001076 1088 ERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE 1125 (1163)
Q Consensus 1088 ~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~I~~Pd~eeR~ 1125 (1163)
.+|.||||||+. ..+-+.|.-|+ .++.+..|...+|.
T Consensus 380 vDVRIIAATN~nL~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~ 423 (560)
T COG3829 380 VDVRIIAATNRNLEKMIAEGTFREDLYYRL-NVIPITIPPLRERK 423 (560)
T ss_pred eEEEEEeccCcCHHHHHhcCcchhhheeee-ceeeecCCCcccCc
Confidence 789999999973 34444555577 58888999877775
No 197
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.89 E-value=8.3e-10 Score=118.40 Aligned_cols=46 Identities=43% Similarity=0.666 Sum_probs=36.3
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001076 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 947 tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
.|.+|.|++.+|+.|.-... + ..+|||+||||||||++|+.+...+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G-----~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G-----GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C-----C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C-----CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999976653 1 2589999999999999999998666
No 198
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.88 E-value=1e-09 Score=109.49 Aligned_cols=118 Identities=31% Similarity=0.415 Sum_probs=68.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc-ccc-cccccch----HHHHHHHHHHHh-ccCCeEEEEccccccccC
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMS-SIT-SKWFGEG----EKYVKAVFSLAS-KIAPSVVFVDEVDSMLGR 1058 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~Id~s-eL~-s~~~Ge~----E~~Ir~lF~~A~-k~~PsILfIDEID~L~g~ 1058 (1163)
+|||+|+||+|||++|+++|+.++..|.+|.+. +++ ++..|.. +. +.|...+ ..-..|+++|||.+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~~GPif~~ill~DEiNra--- 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFRPGPIFTNILLADEINRA--- 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEEEE-TT-SSEEEEETGGGS---
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEeecChhhhceeeecccccC---
Confidence 589999999999999999999999999988763 332 1111110 00 0000000 001259999999855
Q ss_pred CCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCC-----CCCHHHHhccC
Q 001076 1059 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF-----DLDEAVVRRLP 1111 (1163)
Q Consensus 1059 r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~-----~Ld~aLlrRFd 1111 (1163)
.+..+.++.+++++....+++....-+.+++||||-|+.+ .|++++++||-
T Consensus 75 --ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 75 --PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp ---HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred --CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 5566677766766666666676666678899999999865 78899999983
No 199
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.88 E-value=5.9e-09 Score=120.12 Aligned_cols=166 Identities=19% Similarity=0.311 Sum_probs=99.6
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEE------
Q 001076 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFI------ 1013 (1163)
Q Consensus 947 tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL-------g~pfi------ 1013 (1163)
.|..|+|+++++..|.-.+..| ...++||.|++|+|||+|+++++..+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~--------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~ 67 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP--------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDP 67 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC--------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCc
Confidence 3778999999998886544321 12579999999999999999999877 33322
Q ss_pred -------E------------------Eeccc--cccccccch--HHHHH-H--HHH--HHhccCCeEEEEccccccccCC
Q 001076 1014 -------N------------------ISMSS--ITSKWFGEG--EKYVK-A--VFS--LASKIAPSVVFVDEVDSMLGRR 1059 (1163)
Q Consensus 1014 -------~------------------Id~se--L~s~~~Ge~--E~~Ir-~--lF~--~A~k~~PsILfIDEID~L~g~r 1059 (1163)
+ .+++. .....+|.. +..+. + .|. ...+...++||||||++|
T Consensus 68 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L---- 143 (337)
T TIGR02030 68 EMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLL---- 143 (337)
T ss_pred cccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhC----
Confidence 0 01100 001222221 01100 0 011 011223479999999987
Q ss_pred CCcchHHHHHHHHHHHH--HHhcCCcccCCCCEEEEEEeCCCC-CCCHHHHhccCcEEEecCCCH-HHHHHHHHHH
Q 001076 1060 ENPGEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPDA-PNREKIIRVI 1131 (1163)
Q Consensus 1060 ~s~~~~eal~~il~~LL--~~Ldgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRFd~vI~I~~Pd~-eeR~eILk~l 1131 (1163)
++..+..+..++.+-. ...+|.....+.++++|+|.|..+ .|.++++.||...+.+..|.. ++|.+|++..
T Consensus 144 -~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~ 218 (337)
T TIGR02030 144 -EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERR 218 (337)
T ss_pred -CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhh
Confidence 2222222222221110 011333333346899999998755 799999999999999998875 8888998874
No 200
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.87 E-value=3.9e-08 Score=119.05 Aligned_cols=151 Identities=23% Similarity=0.351 Sum_probs=97.1
Q ss_pred CCCce-EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHH--------hccCCeEEEEccc
Q 001076 982 KPCKG-ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA--------SKIAPSVVFVDEV 1052 (1163)
Q Consensus 982 ~p~kg-VLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A--------~k~~PsILfIDEI 1052 (1163)
+|... +||+||||-|||+||+.||+++|+.++.|+.++-.+ ...++.....| ....|.+|+||||
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEI 396 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEI 396 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecc
Confidence 44433 799999999999999999999999999999988332 12222222222 2257999999999
Q ss_pred cccccCCCCcchHHHHHHHHHHHHHHhc--C--CcccCC-------------CCEEEEEEeCCCCCCCHHHH--hccCcE
Q 001076 1053 DSMLGRRENPGEHEAMRKMKNEFMVNWD--G--LRTKDK-------------ERVLVLAATNRPFDLDEAVV--RRLPRR 1113 (1163)
Q Consensus 1053 D~L~g~r~s~~~~eal~~il~~LL~~Ld--g--l~~k~~-------------~~VlVIaTTN~p~~Ld~aLl--rRFd~v 1113 (1163)
|-- . +..++.++..+. + ...+.. -.--||+.+|.... |+|+ |-|.++
T Consensus 397 DGa---------~---~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~i 462 (877)
T KOG1969|consen 397 DGA---------P---RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEI 462 (877)
T ss_pred cCC---------c---HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEE
Confidence 922 1 222222332222 1 111110 12346778887554 5555 468889
Q ss_pred EEecCCCHHHHHHHHHHHHhhCCCCC-hhhHHHHHHHcCC
Q 001076 1114 LMVNLPDAPNREKIIRVILAKEELAS-DVDLEGIANMADG 1152 (1163)
Q Consensus 1114 I~I~~Pd~eeR~eILk~ll~k~~l~~-dvdl~~LA~~TeG 1152 (1163)
++|.+|....-.+-|+.++.++++.- --.+..|+..|++
T Consensus 463 i~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~ 502 (877)
T KOG1969|consen 463 IAFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQN 502 (877)
T ss_pred EEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc
Confidence 99999998888888888888877653 2345556555554
No 201
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.2e-08 Score=115.40 Aligned_cols=72 Identities=33% Similarity=0.605 Sum_probs=61.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc-cccccch-HHHHHHHHHHHh----ccCCeEEEEccccccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKWFGEG-EKYVKAVFSLAS----KIAPSVVFVDEVDSML 1056 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~-s~~~Ge~-E~~Ir~lF~~A~----k~~PsILfIDEID~L~ 1056 (1163)
.+|||.||+|+|||.||+.||+-++.||..+||..|. ..|+|+. |..|..+...|. +.+.+|+||||+|.+.
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~ 304 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKIT 304 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhc
Confidence 4799999999999999999999999999999999987 4688876 455666777663 4467999999999997
No 202
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.86 E-value=7.2e-09 Score=122.71 Aligned_cols=167 Identities=23% Similarity=0.299 Sum_probs=112.8
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc--
Q 001076 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-- 1021 (1163)
Q Consensus 947 tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~-- 1021 (1163)
.+.+++|....++++.+.+... .....+|||+|++||||..+|++|-+.. +-||+.+||..+-
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv------------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV------------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 4568999999999998887531 2233579999999999999999998776 6799999997743
Q ss_pred ---cccccchHHH-------HHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEE
Q 001076 1022 ---SKWFGEGEKY-------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 1091 (1163)
Q Consensus 1022 ---s~~~Ge~E~~-------Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~Vl 1091 (1163)
+..||...+. -...|+.|. .+.||||||..| +...|..+.+++++--..--|-...-+.+|.
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~---GGTLfLDEI~~m-----pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvR 278 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQAN---GGTLFLDEIGEM-----PLELQVKLLRVLQEREFERVGGNKPIKVDVR 278 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcC---CceEEeeccccC-----CHHHHHHHHHHHHcCeeEecCCCcccceeeE
Confidence 3345522211 112344333 489999999987 3334444444444433222233333456899
Q ss_pred EEEEeCCC-------CCCCHHHHhccCcEEEecCCCHHHHH----HHHHHHHhh
Q 001076 1092 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILAK 1134 (1163)
Q Consensus 1092 VIaTTN~p-------~~Ld~aLlrRFd~vI~I~~Pd~eeR~----eILk~ll~k 1134 (1163)
||++||.. ..+-+.|.-|+ .++.+..|...+|. -++++++.+
T Consensus 279 iIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~ 331 (464)
T COG2204 279 IIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKR 331 (464)
T ss_pred EEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHH
Confidence 99999873 45667777788 68999999987775 455555544
No 203
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=5.3e-08 Score=112.05 Aligned_cols=152 Identities=18% Similarity=0.255 Sum_probs=103.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEeccccccccccchHHHHHHHHH
Q 001076 982 KPCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFS 1037 (1163)
Q Consensus 982 ~p~kgVLL~GPPGTGKT~LArALA~eLg~p------------------------fi~Id~seL~s~~~Ge~E~~Ir~lF~ 1037 (1163)
+.+..+||+||+|+|||++|+++|+.+.+. ++.+.... .+.. -.-..++.+..
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~-~~~~--i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE-ADKT--IKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC-CCCC--CCHHHHHHHHH
Confidence 345679999999999999999999998542 12221100 0000 12235666555
Q ss_pred HHhc----cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcE
Q 001076 1038 LASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRR 1113 (1163)
Q Consensus 1038 ~A~k----~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~v 1113 (1163)
.+.. ...-|++||++|.|- ....|.|+..++. .+.++++|.+|+.++.|.+++++|+ ..
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~------------~~aaNaLLK~LEE----Pp~~~~fiL~t~~~~~ll~TI~SRc-~~ 159 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMN------------RNAANALLKSLEE----PSGDTVLLLISHQPSRLLPTIKSRC-QQ 159 (328)
T ss_pred HHhhccccCCCeEEEECChhhCC------------HHHHHHHHHHHhC----CCCCeEEEEEECChhhCcHHHHhhc-ee
Confidence 5543 345699999999882 2345666666655 2357899999999999999999999 57
Q ss_pred EEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHH
Q 001076 1114 LMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGS 1156 (1163)
Q Consensus 1114 I~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySga 1156 (1163)
+.|.+|+.++..+.+...... ..+.+...++.++.|--+.
T Consensus 160 ~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gsp~~ 199 (328)
T PRK05707 160 QACPLPSNEESLQWLQQALPE---SDERERIELLTLAGGSPLR 199 (328)
T ss_pred eeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCCHHH
Confidence 999999999888887664311 2344455667777775543
No 204
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.85 E-value=2.6e-08 Score=112.49 Aligned_cols=149 Identities=20% Similarity=0.293 Sum_probs=100.4
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--------------------
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------------------- 1009 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg-------------------- 1009 (1163)
++.+.+.....+...+.. .+ +.+..+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~---------~~---~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 2 ELVPWQEAVKRLLVQALE---------SG---RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CcccchhHHHHHHHHHHh---------cC---CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 456777777777776642 11 2223599999999999999999999996
Q ss_pred ----CcEEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcC
Q 001076 1010 ----ANFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1081 (1163)
Q Consensus 1010 ----~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~----~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldg 1081 (1163)
..|+.++.++..... .....++.+-...... ..-||+|||+|.|. ....+.++..+..
T Consensus 70 ~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt------------~~A~nallk~lEe 135 (325)
T COG0470 70 AGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT------------EDAANALLKTLEE 135 (325)
T ss_pred hcCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh------------HHHHHHHHHHhcc
Confidence 466777766643321 1233455544444333 35799999999883 2334455554443
Q ss_pred CcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHH
Q 001076 1082 LRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIR 1129 (1163)
Q Consensus 1082 l~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk 1129 (1163)
.+.+..+|.+||.+..+-+.+++|+ .++.|.+|+...+....+
T Consensus 136 ----p~~~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 136 ----PPKNTRFILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred ----CCCCeEEEEEcCChhhccchhhhcc-eeeecCCchHHHHHHHhh
Confidence 3467899999999999999999998 678888765554444333
No 205
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.81 E-value=1.3e-08 Score=123.57 Aligned_cols=174 Identities=22% Similarity=0.272 Sum_probs=100.6
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-EEE---Eeccccccccc
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-FIN---ISMSSITSKWF 1025 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p-fi~---Id~seL~s~~~ 1025 (1163)
.|.|++.++..+.-.+.-- .......+...+...+|||+|+||||||++|+++++.+... |+. .++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l~gg--~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGG--VHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHHhCC--CccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 6789999887775544221 00001111112233479999999999999999999987533 322 12222221111
Q ss_pred cch---HHHH-HHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHh--cCCcccCCCCEEEEEEeCCC
Q 001076 1026 GEG---EKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRP 1099 (1163)
Q Consensus 1026 Ge~---E~~I-r~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~L--dgl~~k~~~~VlVIaTTN~p 1099 (1163)
... +..+ ...+. ....++++|||++.+ .+..+..+..++++-...+ .|....-+.++.||||+|+.
T Consensus 282 ~~~~~g~~~~~~G~l~---~A~~Gil~iDEi~~l-----~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~ 353 (509)
T smart00350 282 RDPETREFTLEGGALV---LADNGVCCIDEFDKM-----DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPI 353 (509)
T ss_pred EccCcceEEecCccEE---ecCCCEEEEechhhC-----CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCC
Confidence 110 0000 00111 123579999999987 2222222222221111001 23333345789999999975
Q ss_pred C-------------CCCHHHHhccCcEEEe-cCCCHHHHHHHHHHHHh
Q 001076 1100 F-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILA 1133 (1163)
Q Consensus 1100 ~-------------~Ld~aLlrRFd~vI~I-~~Pd~eeR~eILk~ll~ 1133 (1163)
+ .|++++++|||.++.+ +.|+.+.+.+|.++++.
T Consensus 354 ~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 354 GGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred CcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 2 6899999999886555 78999999999998764
No 206
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.80 E-value=6.5e-08 Score=113.25 Aligned_cols=155 Identities=21% Similarity=0.348 Sum_probs=106.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcccccccc
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLG 1057 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL-----g~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g 1057 (1163)
+...++|||+.|.|||+|++|++++. +..++.+....++..++......-..-|..-+ .-.+++||+|+.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 34579999999999999999999888 34567777666554443322222223455555 557999999998865
Q ss_pred CCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCC---CCHHHHhccCc--EEEecCCCHHHHHHHHHHHH
Q 001076 1058 RRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLPR--RLMVNLPDAPNREKIIRVIL 1132 (1163)
Q Consensus 1058 ~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRFd~--vI~I~~Pd~eeR~eILk~ll 1132 (1163)
+.. .++....++|.+... .+-+|+.+-..|.. +.+.+++||.. ++.+.+|+.+.|..|++...
T Consensus 190 k~~---~qeefFh~FN~l~~~---------~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 190 KER---TQEEFFHTFNALLEN---------GKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred Chh---HHHHHHHHHHHHHhc---------CCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 432 255666677766522 34455544455654 44899999865 67889999999999999987
Q ss_pred hhCCCC-ChhhHHHHHHHcC
Q 001076 1133 AKEELA-SDVDLEGIANMAD 1151 (1163)
Q Consensus 1133 ~k~~l~-~dvdl~~LA~~Te 1151 (1163)
...++. ++..+.-||....
T Consensus 258 ~~~~~~i~~ev~~~la~~~~ 277 (408)
T COG0593 258 EDRGIEIPDEVLEFLAKRLD 277 (408)
T ss_pred HhcCCCCCHHHHHHHHHHhh
Confidence 776654 4555666666554
No 207
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.80 E-value=5.7e-09 Score=109.17 Aligned_cols=140 Identities=21% Similarity=0.313 Sum_probs=79.1
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-----
Q 001076 951 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----- 1022 (1163)
Q Consensus 951 I~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s----- 1022 (1163)
|+|.+..++.+.+.+.... ..+.+|||+|++||||+++|++|-+.. +.||+.+||+.+..
T Consensus 1 liG~s~~m~~~~~~~~~~a------------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~ 68 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA------------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLES 68 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT------------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh------------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhh
Confidence 4566777777777665321 122689999999999999999998866 57999999987532
Q ss_pred ccccchHH-------HHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEE
Q 001076 1023 KWFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1095 (1163)
Q Consensus 1023 ~~~Ge~E~-------~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaT 1095 (1163)
..||.... .-..+|..|.. ++||||||+.| +...+..+.+++++-....-+-......++.||++
T Consensus 69 ~LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~s 140 (168)
T PF00158_consen 69 ELFGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDL-----PPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIAS 140 (168)
T ss_dssp HHHEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEE
T ss_pred hhhccccccccccccccCCceeeccc---eEEeecchhhh-----HHHHHHHHHHHHhhchhccccccccccccceEEee
Confidence 23332211 11246666654 89999999988 22233322222221110001111112358999999
Q ss_pred eCCC-------CCCCHHHHhcc
Q 001076 1096 TNRP-------FDLDEAVVRRL 1110 (1163)
Q Consensus 1096 TN~p-------~~Ld~aLlrRF 1110 (1163)
|+.. ..+.+.|..|+
T Consensus 141 t~~~l~~~v~~g~fr~dLy~rL 162 (168)
T PF00158_consen 141 TSKDLEELVEQGRFREDLYYRL 162 (168)
T ss_dssp ESS-HHHHHHTTSS-HHHHHHH
T ss_pred cCcCHHHHHHcCCChHHHHHHh
Confidence 9863 35555565555
No 208
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.80 E-value=5.7e-08 Score=121.93 Aligned_cols=168 Identities=21% Similarity=0.323 Sum_probs=104.5
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s 1022 (1163)
.+|++++|....++.+.+.+...- ....+|||+|++|||||++|++|.... +.+|+.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a------------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVA------------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHh------------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 467889999999988887775311 123579999999999999999998765 67999999987532
Q ss_pred -----ccccchHH-------HHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCE
Q 001076 1023 -----KWFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 1090 (1163)
Q Consensus 1023 -----~~~Ge~E~-------~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~V 1090 (1163)
.++|.... .....|..| ..++||||||+.| +...+..+..++++-.....+.......++
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L-----~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~ 512 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDM-----PLELQPKLLRVLQEQEFERLGSNKIIQTDV 512 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhC-----CHHHHHHHHHHHHhCCEEeCCCCCcccceE
Confidence 23332110 111234333 3589999999987 222233332222221000011111123578
Q ss_pred EEEEEeCCC-------CCCCHHHHhccCcEEEecCCCHHHHHH----HHHHHHhh
Q 001076 1091 LVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAK 1134 (1163)
Q Consensus 1091 lVIaTTN~p-------~~Ld~aLlrRFd~vI~I~~Pd~eeR~e----ILk~ll~k 1134 (1163)
.+|++|+.. ..+...+..|+ ..+.|.+|...+|.+ ++++++.+
T Consensus 513 RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~ 566 (686)
T PRK15429 513 RLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKAFTFK 566 (686)
T ss_pred EEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHHHHHH
Confidence 999999763 34556666677 467788898888754 45555443
No 209
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.79 E-value=1e-08 Score=119.69 Aligned_cols=168 Identities=21% Similarity=0.290 Sum_probs=106.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH----hCCcEEEEecccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE----AGANFINISMSSI 1020 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~e----Lg~pfi~Id~seL 1020 (1163)
...+.+++|.+...+.+++.+.. | .....+|||+|++||||+.+|+.|... ...||+.+||+.+
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~-------~-----ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA-------Y-----APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh-------h-----CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 34577899999888888887753 1 122357999999999999999998633 3679999999885
Q ss_pred ccc-----cccchHH-------HHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCC
Q 001076 1021 TSK-----WFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1088 (1163)
Q Consensus 1021 ~s~-----~~Ge~E~-------~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~ 1088 (1163)
... .||..+. .-..+|+.|. .++||+|||.+| ++..++.+.+++++....--|.......
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~---GGtLfLDEI~~L-----P~~~Q~kLl~~le~g~~~rvG~~~~~~~ 213 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQAN---GGTLFLDEIHRL-----PPEGQEKLLRVLEEGEYRRVGGSQPRPV 213 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecC---CCEEehhhhhhC-----CHhHHHHHHHHHHcCceEecCCCCCcCC
Confidence 432 3331111 1122444333 379999999988 4556666666655543332222333457
Q ss_pred CEEEEEEeCC--CCCCCH--HHHh-ccCcEEEecCCCHHHH----HHHHHHHHhh
Q 001076 1089 RVLVLAATNR--PFDLDE--AVVR-RLPRRLMVNLPDAPNR----EKIIRVILAK 1134 (1163)
Q Consensus 1089 ~VlVIaTTN~--p~~Ld~--aLlr-RFd~vI~I~~Pd~eeR----~eILk~ll~k 1134 (1163)
+|++|++|+. .+.+-. .|.+ |+. +.|.+|+..+| ..++++++..
T Consensus 214 dVRli~AT~~~l~~~~~~g~dl~~rl~~--~~I~LPpLrER~~Di~~L~e~Fl~~ 266 (403)
T COG1221 214 DVRLICATTEDLEEAVLAGADLTRRLNI--LTITLPPLRERKEDILLLAEHFLKS 266 (403)
T ss_pred CceeeeccccCHHHHHHhhcchhhhhcC--ceecCCChhhchhhHHHHHHHHHHH
Confidence 8999999865 233333 5555 454 55666666555 4455555543
No 210
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.79 E-value=1.3e-08 Score=124.21 Aligned_cols=169 Identities=22% Similarity=0.293 Sum_probs=102.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~ 1021 (1163)
..+|++++|.+...+.+.+.+.... ....+|||+|++||||+++|++|.+.. +.||+.+||..+.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVA------------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 3578899999999999888775421 223579999999999999999999876 5799999998763
Q ss_pred cc-----cccchHHHH-------HHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCC
Q 001076 1022 SK-----WFGEGEKYV-------KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1089 (1163)
Q Consensus 1022 s~-----~~Ge~E~~I-------r~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~ 1089 (1163)
.. .+|...+.. ...|.. ...++||||||+.| +...+..+..++++-...-.+-......+
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~GtL~ldei~~L-----~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~ 331 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFEL---ADGGTLFLDEIGEI-----SPAFQAKLLRVLQEGEFERVGGNRTLKVD 331 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCcccc---cCCCeEEEechhhC-----CHHHHHHHHHHHhcCcEEECCCCceEeec
Confidence 22 122111000 011222 23589999999988 22222222222211000000100111236
Q ss_pred EEEEEEeCCC-------CCCCHHHHhccCcEEEecCCCHHHH----HHHHHHHHhh
Q 001076 1090 VLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNR----EKIIRVILAK 1134 (1163)
Q Consensus 1090 VlVIaTTN~p-------~~Ld~aLlrRFd~vI~I~~Pd~eeR----~eILk~ll~k 1134 (1163)
+.+|+||+.. ..+.+.|..|+. .+.+.+|...+| ..++++++.+
T Consensus 332 ~riI~~s~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLreR~eDi~~L~~~~l~~ 386 (534)
T TIGR01817 332 VRLVAATNRDLEEAVAKGEFRADLYYRIN-VVPIFLPPLRERREDIPLLAEAFLEK 386 (534)
T ss_pred EEEEEeCCCCHHHHHHcCCCCHHHHHHhc-CCeeeCCCcccccccHHHHHHHHHHH
Confidence 8999998753 356677777874 455666665544 4566666654
No 211
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.77 E-value=3.2e-08 Score=113.74 Aligned_cols=166 Identities=19% Similarity=0.186 Sum_probs=100.9
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-
Q 001076 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS- 1022 (1163)
Q Consensus 947 tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s- 1022 (1163)
.+++++|.+...+.+.+.+.... ....+|||+|++||||+++|++|.... +.||+.+||..+..
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a------------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~ 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLA------------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHh------------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHH
Confidence 35678899988888888775421 123579999999999999999997665 57999999987532
Q ss_pred ----ccccchHHH-------HHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEE
Q 001076 1023 ----KWFGEGEKY-------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 1091 (1163)
Q Consensus 1023 ----~~~Ge~E~~-------Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~Vl 1091 (1163)
.++|..... ....|.. ...++|||||||.|- ...+..+..++++-...-.+.....+.++.
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~---a~gGtL~l~~i~~L~-----~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~R 143 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAP-----MLVQEKLLRVIEYGELERVGGSQPLQVNVR 143 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhc---cCCCeEEeCChhhCC-----HHHHHHHHHHHhcCcEEeCCCCceeeccEE
Confidence 223321100 0122332 235899999999882 222222222221110000011111124689
Q ss_pred EEEEeCCC-------CCCCHHHHhccCcEEEecCCCHHHHH----HHHHHHHh
Q 001076 1092 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILA 1133 (1163)
Q Consensus 1092 VIaTTN~p-------~~Ld~aLlrRFd~vI~I~~Pd~eeR~----eILk~ll~ 1133 (1163)
||+||+.. ..+.+.+..||. .+.|.+|...+|. .++++++.
T Consensus 144 iI~~s~~~l~~l~~~g~f~~dL~~~l~-~~~i~lPpLReR~eDI~~L~~~fl~ 195 (326)
T PRK11608 144 LVCATNADLPAMVAEGKFRADLLDRLA-FDVVQLPPLRERQSDIMLMAEHFAI 195 (326)
T ss_pred EEEeCchhHHHHHHcCCchHHHHHhcC-CCEEECCChhhhhhhHHHHHHHHHH
Confidence 99998763 467788888883 4667777777764 44555543
No 212
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.77 E-value=3e-08 Score=117.98 Aligned_cols=160 Identities=19% Similarity=0.202 Sum_probs=90.8
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecc-cccccccc
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMS-SITSKWFG 1026 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~--pfi~Id~s-eL~s~~~G 1026 (1163)
.|+|.+++++.+...+.. ..+|||+||||||||+||++|+..++. +|..+.+. ......+|
T Consensus 21 ~i~gre~vI~lll~aala----------------g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG 84 (498)
T PRK13531 21 GLYERSHAIRLCLLAALS----------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 84 (498)
T ss_pred hccCcHHHHHHHHHHHcc----------------CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcC
Confidence 356888888887665521 257999999999999999999998742 44443332 11123334
Q ss_pred ch-HHHH--HHHHHHHhcc---CCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCC
Q 001076 1027 EG-EKYV--KAVFSLASKI---APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1163)
Q Consensus 1027 e~-E~~I--r~lF~~A~k~---~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1163)
.. -... .+.|...... ...|||+|||.++ ++..+..+-.++++-....++-..+-+.++++++| |...
T Consensus 85 ~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~AT-N~LP 158 (498)
T PRK13531 85 PLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTAS-NELP 158 (498)
T ss_pred cHHHhhhhhcCchhhhcCCccccccEEeecccccC-----CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEEC-CCCc
Confidence 21 0000 1122211111 2249999999855 33333333333333322222322222345555555 6422
Q ss_pred ---CCCHHHHhccCcEEEecCCC-HHHHHHHHHHH
Q 001076 1101 ---DLDEAVVRRLPRRLMVNLPD-APNREKIIRVI 1131 (1163)
Q Consensus 1101 ---~Ld~aLlrRFd~vI~I~~Pd-~eeR~eILk~l 1131 (1163)
.+.+++..||...+.+++|+ .++..+++...
T Consensus 159 E~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 159 EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred ccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 34469999997788888886 45556777653
No 213
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=8.1e-08 Score=110.56 Aligned_cols=149 Identities=13% Similarity=0.116 Sum_probs=102.6
Q ss_pred CcccccC-cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001076 947 TFDDIGA-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 1011 (1163)
Q Consensus 947 tfddI~G-leevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p-------------- 1011 (1163)
.|+.|.| ++.+++.|...+.. .+.+..+||+||+|+||+++|+++|+.+-++
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c 69 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC 69 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence 3667777 88888988887742 3344678999999999999999999987432
Q ss_pred ----------EEEEeccccccccccchHHHHHHHHHHHhc----cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHH
Q 001076 1012 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1077 (1163)
Q Consensus 1012 ----------fi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k----~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~ 1077 (1163)
+..+... +..+ .-..++.+...+.. ...-|++|||+|.+- ....|.|+.
T Consensus 70 ~~~~~~~hpD~~~i~~~---~~~i--~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~------------~~a~NaLLK 132 (329)
T PRK08058 70 KRIDSGNHPDVHLVAPD---GQSI--KKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT------------ASAANSLLK 132 (329)
T ss_pred HHHhcCCCCCEEEeccc---cccC--CHHHHHHHHHHHhhCCcccCceEEEeehHhhhC------------HHHHHHHHH
Confidence 1111110 1111 12245554444332 234699999999772 234456776
Q ss_pred HhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHH
Q 001076 1078 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV 1130 (1163)
Q Consensus 1078 ~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ 1130 (1163)
.++. .+..+++|.+|+.+..|.+++++|+ .++.|..|+.++..++++.
T Consensus 133 ~LEE----Pp~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 133 FLEE----PSGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhcC----CCCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 6665 2356788888888999999999999 7899999999887666653
No 214
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.4e-07 Score=110.13 Aligned_cols=179 Identities=23% Similarity=0.343 Sum_probs=117.7
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-----cEEEEecccccccc
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-----NFINISMSSITSKW 1024 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~-----pfi~Id~seL~s~~ 1024 (1163)
.+.+.++.++++..++...+. + ..| .+++++|+||||||.+++.+++++.- .++++||..+.+.+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~-------~--~~p-~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR-------G--ERP-SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc-------C--CCC-ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 477889999999888754333 1 223 46999999999999999999999833 38899986643211
Q ss_pred ---------------ccch-HHHHHHHHHHHhc-cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCC
Q 001076 1025 ---------------FGEG-EKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 1087 (1163)
Q Consensus 1025 ---------------~Ge~-E~~Ir~lF~~A~k-~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~ 1087 (1163)
.|.. ......+++...+ ....||+|||+|.|..+.. .++-.|.. ......
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r----~~~~~~ 154 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLR----APGENK 154 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHh----hccccc
Confidence 1111 1223333333333 3467999999999974432 22222322 222224
Q ss_pred CCEEEEEEeCCC---CCCCHHHHhccC-cEEEecCCCHHHHHHHHHHHHhh---CCCCChhhHHHHHHHcC
Q 001076 1088 ERVLVLAATNRP---FDLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAK---EELASDVDLEGIANMAD 1151 (1163)
Q Consensus 1088 ~~VlVIaTTN~p---~~Ld~aLlrRFd-~vI~I~~Pd~eeR~eILk~ll~k---~~l~~dvdl~~LA~~Te 1151 (1163)
.+|.+|+.+|.. +.+++.+.++|. ..|.|++.+.+|...|++.-... .+..++..+..+|..+.
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a 225 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVA 225 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHH
Confidence 678999999875 467788888763 45899999999999999987764 22334444555555544
No 215
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.75 E-value=2.2e-07 Score=105.36 Aligned_cols=52 Identities=21% Similarity=0.325 Sum_probs=40.8
Q ss_pred CCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcC
Q 001076 1099 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMAD 1151 (1163)
Q Consensus 1099 p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~Te 1151 (1163)
|+-++..|+.|+ .+|.-.+.+.++.++|++.-.+...+. ++..++.|+..-.
T Consensus 342 PhGIP~DlLDRl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~ 394 (450)
T COG1224 342 PHGIPLDLLDRL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGE 394 (450)
T ss_pred CCCCCHhhhhhe-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhch
Confidence 788999999998 678888899999999999988876654 4555666665443
No 216
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.75 E-value=1.8e-08 Score=122.48 Aligned_cols=168 Identities=21% Similarity=0.316 Sum_probs=104.3
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH-----------hCCcEEE
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE-----------AGANFIN 1014 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~e-----------Lg~pfi~ 1014 (1163)
.+|++++|....++.+.+.+... .....+|||+|++||||+++|++|-+. .+.||+.
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~------------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY------------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH------------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 35888999999998888877531 112357999999999999999999877 3679999
Q ss_pred Eecccccc-----ccccchHHH--------HHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcC
Q 001076 1015 ISMSSITS-----KWFGEGEKY--------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1081 (1163)
Q Consensus 1015 Id~seL~s-----~~~Ge~E~~--------Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldg 1081 (1163)
+||..+.. ..||..+.. -..+|+.|. .+.||||||+.| +...+..+.+++++-....-|
T Consensus 284 inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----p~~~Q~kLl~~L~e~~~~r~G 355 (538)
T PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEM-----PLPLQTRLLRVLEEKEVTRVG 355 (538)
T ss_pred eecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhC-----CHHHHHHHHhhhhcCeEEecC
Confidence 99987532 233422211 112444433 479999999988 223333333322221100111
Q ss_pred CcccCCCCEEEEEEeCCC-------CCCCHHHHhccCcEEEecCCCHHHHH----HHHHHHHhh
Q 001076 1082 LRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILAK 1134 (1163)
Q Consensus 1082 l~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~I~~Pd~eeR~----eILk~ll~k 1134 (1163)
....-+.++.+|++||.. ..+.+.+..|+ ..+.+.+|...+|. .++++++.+
T Consensus 356 ~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI~~L~~~fl~~ 418 (538)
T PRK15424 356 GHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADILPLAESFLKQ 418 (538)
T ss_pred CCceeccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHHHHHHHHHHHH
Confidence 111123467999999763 23445566677 46778888877765 355556554
No 217
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.74 E-value=2.4e-08 Score=114.93 Aligned_cols=161 Identities=17% Similarity=0.189 Sum_probs=95.1
Q ss_pred cCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-----
Q 001076 952 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----- 1023 (1163)
Q Consensus 952 ~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~----- 1023 (1163)
+|....++.+.+.+... .....+|||+|++||||+++|++|.... +.||+.+||..+...
T Consensus 2 iG~S~~m~~~~~~~~~~------------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~ 69 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRL------------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSE 69 (329)
T ss_pred CcCCHHHHHHHHHHHHH------------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHH
Confidence 46666666666666431 1123579999999999999999997766 579999999875322
Q ss_pred cccchHH-------HHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEe
Q 001076 1024 WFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1096 (1163)
Q Consensus 1024 ~~Ge~E~-------~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTT 1096 (1163)
.||.... .-..+|..| ..++||||||+.| +...+..+..++++-...-.|.......++.+|++|
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at 141 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATA-----SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCAT 141 (329)
T ss_pred HhccccccccCcccccCCchhhC---CCCEEEeCChHhC-----CHHHHHHHHHHHHcCcEEecCCCceeccceEEEEec
Confidence 2221110 011123333 3589999999988 222333332222211100011111123578999999
Q ss_pred CCC-------CCCCHHHHhccCcEEEecCCCHHHHH----HHHHHHHh
Q 001076 1097 NRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILA 1133 (1163)
Q Consensus 1097 N~p-------~~Ld~aLlrRFd~vI~I~~Pd~eeR~----eILk~ll~ 1133 (1163)
+.. ..+.+.|..||. .+.|.+|...+|. .++++++.
T Consensus 142 ~~~l~~~~~~g~fr~dL~~rl~-~~~i~lPpLReR~eDI~~L~~~fl~ 188 (329)
T TIGR02974 142 NADLPALAAEGRFRADLLDRLA-FDVITLPPLRERQEDIMLLAEHFAI 188 (329)
T ss_pred hhhHHHHhhcCchHHHHHHHhc-chhcCCCchhhhhhhHHHHHHHHHH
Confidence 753 356677888884 5677788777664 34444443
No 218
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.74 E-value=5.1e-08 Score=118.34 Aligned_cols=166 Identities=18% Similarity=0.266 Sum_probs=103.0
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-
Q 001076 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS- 1022 (1163)
Q Consensus 947 tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s- 1022 (1163)
.+.+++|....++.+.+.+... .....+|||+|++||||+++|++|.... +.+|+.+||..+-.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~------------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV------------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH------------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH
Confidence 3567899999998888887531 1223579999999999999999998875 57999999987632
Q ss_pred ----ccccchHHH-------HHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEE
Q 001076 1023 ----KWFGEGEKY-------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 1091 (1163)
Q Consensus 1023 ----~~~Ge~E~~-------Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~Vl 1091 (1163)
..||..... ....|..| ..+.|||||||.|- ...+..+.+++++-....-+-......++.
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~-----~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 324 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELP-----LALQAKLLRVLQYGEIQRVGSDRSLRVDVR 324 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCC-----HHHHHHHHHHHhcCCEeeCCCCcceecceE
Confidence 223321110 01134333 35899999999882 222322222222110000011111234789
Q ss_pred EEEEeCCC-------CCCCHHHHhccCcEEEecCCCHHHHH----HHHHHHHh
Q 001076 1092 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILA 1133 (1163)
Q Consensus 1092 VIaTTN~p-------~~Ld~aLlrRFd~vI~I~~Pd~eeR~----eILk~ll~ 1133 (1163)
+|++|+.. ..+.+.|..|+ .++.|.+|...+|. .++++++.
T Consensus 325 iI~~t~~~l~~~~~~~~f~~dL~~rl-~~~~i~lPpLreR~eDI~~L~~~fl~ 376 (509)
T PRK05022 325 VIAATNRDLREEVRAGRFRADLYHRL-SVFPLSVPPLRERGDDVLLLAGYFLE 376 (509)
T ss_pred EEEecCCCHHHHHHcCCccHHHHhcc-cccEeeCCCchhchhhHHHHHHHHHH
Confidence 99999763 35777777788 45778888877764 34444444
No 219
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.74 E-value=4.1e-08 Score=119.49 Aligned_cols=158 Identities=25% Similarity=0.327 Sum_probs=99.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~ 1021 (1163)
..+|++++|.....+.+.+.+... .....+|||+|++||||+++|+++-... +.||+.+||+.+.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~------------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKL------------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHH------------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 457999999998888877766421 1122469999999999999999986655 4799999998764
Q ss_pred cc-----cccchHH-------HHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCC--cccCC
Q 001076 1022 SK-----WFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL--RTKDK 1087 (1163)
Q Consensus 1022 s~-----~~Ge~E~-------~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl--~~k~~ 1087 (1163)
.. .+|.... .-..+|+.|. .+.||||||+.| +...+..+.++++.-. +... .....
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L-----~~~~Q~~Ll~~l~~~~--~~~~g~~~~~~ 337 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEM-----SPRMQAKLLRFLNDGT--FRRVGEDHEVH 337 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhC-----CHHHHHHHHHHHhcCC--cccCCCCccee
Confidence 32 2332110 1122444443 489999999988 2223333322222110 1111 11113
Q ss_pred CCEEEEEEeCCC-------CCCCHHHHhccCcEEEecCCCHHHHH
Q 001076 1088 ERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE 1125 (1163)
Q Consensus 1088 ~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~I~~Pd~eeR~ 1125 (1163)
.++.||+||+.. ..+.+.+..|+ .++.+.+|...+|.
T Consensus 338 ~~vRiI~st~~~l~~l~~~g~f~~dL~~rL-~~~~i~lPpLreR~ 381 (520)
T PRK10820 338 VDVRVICATQKNLVELVQKGEFREDLYYRL-NVLTLNLPPLRDRP 381 (520)
T ss_pred eeeEEEEecCCCHHHHHHcCCccHHHHhhc-CeeEEeCCCcccCh
Confidence 468899988653 34667788888 45888888877775
No 220
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.74 E-value=1.2e-07 Score=108.93 Aligned_cols=91 Identities=20% Similarity=0.354 Sum_probs=52.3
Q ss_pred CCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCC------------CCCCCHHHHhcc
Q 001076 1043 APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR------------PFDLDEAVVRRL 1110 (1163)
Q Consensus 1043 ~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~------------p~~Ld~aLlrRF 1110 (1163)
-|+||||||++-| +-....++ +.. ++. +-.+++ |++||+ |+-++..|+.|+
T Consensus 278 vpGVLFIDEvHmL-----DiEcFsfL----nra---lEs----~~sPii-IlATNRg~~~irGt~~~sphGiP~DlLDRl 340 (398)
T PF06068_consen 278 VPGVLFIDEVHML-----DIECFSFL----NRA---LES----ELSPII-ILATNRGITKIRGTDIISPHGIPLDLLDRL 340 (398)
T ss_dssp EE-EEEEESGGGS-----BHHHHHHH----HHH---HTS----TT--EE-EEEES-SEEE-BTTS-EEETT--HHHHTTE
T ss_pred ecceEEecchhhc-----cHHHHHHH----HHH---hcC----CCCcEE-EEecCceeeeccCccCcCCCCCCcchHhhc
Confidence 3789999999866 11111222 222 222 224454 555664 678889999999
Q ss_pred CcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcC
Q 001076 1111 PRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMAD 1151 (1163)
Q Consensus 1111 d~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~Te 1151 (1163)
.+|...+.+.++..+|++.-++.+.+. ++..++.|+....
T Consensus 341 -lII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~ 381 (398)
T PF06068_consen 341 -LIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGV 381 (398)
T ss_dssp -EEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHH
T ss_pred -EEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhh
Confidence 789999999999999999999988765 4455666665544
No 221
>PRK04132 replication factor C small subunit; Provisional
Probab=98.72 E-value=1.7e-07 Score=118.49 Aligned_cols=155 Identities=18% Similarity=0.206 Sum_probs=115.2
Q ss_pred CCCceEEEEc--CCCChHHHHHHHHHHHh-----CCcEEEEeccccccccccchHHHHHHHHHHHhccC------CeEEE
Q 001076 982 KPCKGILLFG--PPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIA------PSVVF 1048 (1163)
Q Consensus 982 ~p~kgVLL~G--PPGTGKT~LArALA~eL-----g~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~------PsILf 1048 (1163)
-|.-+-+..| |++.|||++|.+||+++ +.+|+.+|+++..+ -..++++...+.... ..|||
T Consensus 562 ~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvI 635 (846)
T PRK04132 562 VPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIF 635 (846)
T ss_pred cCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEE
Confidence 3444557778 99999999999999998 56899999987432 124555554433222 36999
Q ss_pred EccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHH
Q 001076 1049 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKII 1128 (1163)
Q Consensus 1049 IDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eIL 1128 (1163)
|||+|.|- .. ..+.|+..|+. ...++.+|++||.++.+.+++++|+ .++.|.+|+.++...++
T Consensus 636 IDEaD~Lt-----~~-------AQnALLk~lEe----p~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L 698 (846)
T PRK04132 636 LDEADALT-----QD-------AQQALRRTMEM----FSSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRL 698 (846)
T ss_pred EECcccCC-----HH-------HHHHHHHHhhC----CCCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHH
Confidence 99999882 12 23444444443 2357899999999999999999998 78999999999999999
Q ss_pred HHHHhhCCCC-ChhhHHHHHHHcCCCCHHHHH
Q 001076 1129 RVILAKEELA-SDVDLEGIANMADGYSGSDLK 1159 (1163)
Q Consensus 1129 k~ll~k~~l~-~dvdl~~LA~~TeGySgaDLk 1159 (1163)
+.++.+.++. ++..+..|+..++|--..-|.
T Consensus 699 ~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 699 RYIAENEGLELTEEGLQAILYIAEGDMRRAIN 730 (846)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 9998876654 567788999998885554443
No 222
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.72 E-value=2.2e-08 Score=121.51 Aligned_cols=168 Identities=23% Similarity=0.295 Sum_probs=103.2
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s 1022 (1163)
.+|++++|....++.+.+.+... . ....+|||+|++||||+++|++|.+.. +.||+.+||..+-.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~-------A-----~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY-------A-----RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-------h-----CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 46889999999998888877531 1 123579999999999999999998765 67999999987532
Q ss_pred -----ccccchHHH--------HHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCC
Q 001076 1023 -----KWFGEGEKY--------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1089 (1163)
Q Consensus 1023 -----~~~Ge~E~~--------Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~ 1089 (1163)
..+|..+.. -..+|+.|. .+.||||||+.| +...+..+.+++++-....-|.....+.+
T Consensus 277 ~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----p~~~Q~~Ll~~L~~~~~~r~g~~~~~~~d 348 (526)
T TIGR02329 277 SLLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEM-----PLPLQTRLLRVLEEREVVRVGGTEPVPVD 348 (526)
T ss_pred hHHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhC-----CHHHHHHHHHHHhcCcEEecCCCceeeec
Confidence 233322111 112344333 479999999988 22333333333322110000111111245
Q ss_pred EEEEEEeCCC-------CCCCHHHHhccCcEEEecCCCHHHHH----HHHHHHHhh
Q 001076 1090 VLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILAK 1134 (1163)
Q Consensus 1090 VlVIaTTN~p-------~~Ld~aLlrRFd~vI~I~~Pd~eeR~----eILk~ll~k 1134 (1163)
+.+|++|+.. ..+.+.+..|+ ..+.+.+|...+|. .++++++.+
T Consensus 349 vRiIaat~~~l~~~v~~g~fr~dL~~rL-~~~~I~lPPLReR~eDI~~L~~~fl~~ 403 (526)
T TIGR02329 349 VRVVAATHCALTTAVQQGRFRRDLFYRL-SILRIALPPLRERPGDILPLAAEYLVQ 403 (526)
T ss_pred ceEEeccCCCHHHHhhhcchhHHHHHhc-CCcEEeCCCchhchhHHHHHHHHHHHH
Confidence 7899999764 23444555576 35777788877765 345555544
No 223
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.72 E-value=3.8e-08 Score=122.44 Aligned_cols=167 Identities=20% Similarity=0.270 Sum_probs=102.0
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc-
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT- 1021 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~- 1021 (1163)
.+|++++|.+...+.+.+.+.... ....+|||+|++||||+++|++|.+.. +.||+.+||..+.
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAA------------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 468899999888888777665311 122469999999999999999998876 5799999998753
Q ss_pred ----cccccchHH----HHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEE
Q 001076 1022 ----SKWFGEGEK----YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1093 (1163)
Q Consensus 1022 ----s~~~Ge~E~----~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVI 1093 (1163)
+.++|.... .....|+.| ..++||||||+.| +...+..+.+++++-...--+.....+.++.||
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l-----~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI 461 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYL-----SPELQSALLQVLKTGVITRLDSRRLIPVDVRVI 461 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEE
Confidence 233442100 001123322 3589999999988 222233222222211000001000112368899
Q ss_pred EEeCCC-------CCCCHHHHhccCcEEEecCCCHHHHH----HHHHHHHh
Q 001076 1094 AATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILA 1133 (1163)
Q Consensus 1094 aTTN~p-------~~Ld~aLlrRFd~vI~I~~Pd~eeR~----eILk~ll~ 1133 (1163)
+||+.. ..+.+.+..|+ ..+.|.+|...+|. .+++.++.
T Consensus 462 ~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~ 511 (638)
T PRK11388 462 ATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRREDIPALVNNKLR 511 (638)
T ss_pred EeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhhhHHHHHHHHHHH
Confidence 999763 35556666677 46888888888874 34445544
No 224
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.66 E-value=7.5e-08 Score=118.69 Aligned_cols=143 Identities=20% Similarity=0.308 Sum_probs=90.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccccccccccchH--HHHH-H--HHH--HHhccCCeEEEEcccccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGE--KYVK-A--VFS--LASKIAPSVVFVDEVDSM 1055 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg--~pfi~Id~seL~s~~~Ge~E--~~Ir-~--lF~--~A~k~~PsILfIDEID~L 1055 (1163)
.+|||.|+||||||++|+++++.++ .+|+.+.........+|... ..+. . .|. ...+...+|||||||+++
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 5799999999999999999999885 46888875433344444321 0010 0 000 001123369999999988
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHhc--CCcccCCCCEEEEEEeCCCC---CCCHHHHhccCcEEEec-CCCHHHHHHHHH
Q 001076 1056 LGRRENPGEHEAMRKMKNEFMVNWD--GLRTKDKERVLVLAATNRPF---DLDEAVVRRLPRRLMVN-LPDAPNREKIIR 1129 (1163)
Q Consensus 1056 ~g~r~s~~~~eal~~il~~LL~~Ld--gl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRFd~vI~I~-~Pd~eeR~eILk 1129 (1163)
++..+..+..++++-...+. |.....+.++.||+|+|..+ .|.+.++.||..++.+. +|+.++|.+|++
T Consensus 97 -----~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~ 171 (589)
T TIGR02031 97 -----DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVEIVR 171 (589)
T ss_pred -----CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHHHHH
Confidence 22222222222221111111 33333346799999999865 79999999999877774 567888999998
Q ss_pred HHH
Q 001076 1130 VIL 1132 (1163)
Q Consensus 1130 ~ll 1132 (1163)
.++
T Consensus 172 ~~~ 174 (589)
T TIGR02031 172 RER 174 (589)
T ss_pred HHH
Confidence 866
No 225
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=9.7e-07 Score=101.47 Aligned_cols=168 Identities=11% Similarity=0.110 Sum_probs=107.8
Q ss_pred cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE-------EE---------ec
Q 001076 954 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI-------NI---------SM 1017 (1163)
Q Consensus 954 leevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi-------~I---------d~ 1017 (1163)
+....+.|...+.. .+-+..+||+||.|+||+++|+++|+.+-+.-- .+ +.
T Consensus 7 ~~~~~~~l~~~~~~-------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~H 73 (325)
T PRK06871 7 LQPTYQQITQAFQQ-------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNH 73 (325)
T ss_pred hHHHHHHHHHHHHc-------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 44556666665532 234568999999999999999999998843210 00 01
Q ss_pred ccccccc--cc--chHHHHHHHHHHHhc----cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCC
Q 001076 1018 SSITSKW--FG--EGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1089 (1163)
Q Consensus 1018 seL~s~~--~G--e~E~~Ir~lF~~A~k----~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~ 1089 (1163)
+++..-. -| -.-..++.+...+.. ...-|++||++|.|- ....|.|+..++. ++.+
T Consensus 74 PD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~------------~~AaNaLLKtLEE----Pp~~ 137 (325)
T PRK06871 74 PDFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLT------------EAAANALLKTLEE----PRPN 137 (325)
T ss_pred CCEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhC------------HHHHHHHHHHhcC----CCCC
Confidence 1111000 01 123345555444433 334699999999882 2344666666655 3467
Q ss_pred EEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCH
Q 001076 1090 VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1155 (1163)
Q Consensus 1090 VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySg 1155 (1163)
+++|.+|+.++.|.+++++|+ .++.|.+|+.++..+.+..... ..+.....++..+.|--+
T Consensus 138 ~~fiL~t~~~~~llpTI~SRC-~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 138 TYFLLQADLSAALLPTIYSRC-QTWLIHPPEEQQALDWLQAQSS----AEISEILTALRINYGRPL 198 (325)
T ss_pred eEEEEEECChHhCchHHHhhc-eEEeCCCCCHHHHHHHHHHHhc----cChHHHHHHHHHcCCCHH
Confidence 899999999999999999999 6889999999988877765431 122234455566666444
No 226
>PRK08116 hypothetical protein; Validated
Probab=98.64 E-value=2.3e-07 Score=104.00 Aligned_cols=162 Identities=17% Similarity=0.226 Sum_probs=88.6
Q ss_pred hcCCCCCCCCCCCcccccCcHH---HHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---
Q 001076 935 LADVIPPSDIGVTFDDIGALEN---VKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA--- 1008 (1163)
Q Consensus 935 l~~iip~~e~~~tfddI~Glee---vk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL--- 1008 (1163)
....+++.-...+|+++..... +.....+++.. |... .....+++|+|++|+|||+||.+||+++
T Consensus 71 ~~s~i~~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~-------~~~~--~~~~~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 71 SNSLLDEKFRNSTFENFLFDKGSEKAYKIARKYVKK-------FEEM--KKENVGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred HhcCCCHHHHhcchhcccCChHHHHHHHHHHHHHHH-------HHhh--ccCCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3445555555667887653333 23333333322 1111 1223579999999999999999999987
Q ss_pred CCcEEEEecccccccccc----chHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcc
Q 001076 1009 GANFINISMSSITSKWFG----EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT 1084 (1163)
Q Consensus 1009 g~pfi~Id~seL~s~~~G----e~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~ 1084 (1163)
+.+++.++.++++..... ........++.... ...+|+|||+... .........+..+++....
T Consensus 142 ~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e---~~t~~~~~~l~~iin~r~~------- 209 (268)
T PRK08116 142 GVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE---RDTEWAREKVYNIIDSRYR------- 209 (268)
T ss_pred CCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC---CCCHHHHHHHHHHHHHHHH-------
Confidence 789999998776543211 11111112222222 3469999999632 1121122223333333221
Q ss_pred cCCCCEEEEEEeCCC-CC----CCHHHHhcc---CcEEEecCCC
Q 001076 1085 KDKERVLVLAATNRP-FD----LDEAVVRRL---PRRLMVNLPD 1120 (1163)
Q Consensus 1085 k~~~~VlVIaTTN~p-~~----Ld~aLlrRF---d~vI~I~~Pd 1120 (1163)
....+|.|||.+ .. ++..+.+|+ ...|.+.-++
T Consensus 210 ---~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d 250 (268)
T PRK08116 210 ---KGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKS 250 (268)
T ss_pred ---CCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcC
Confidence 223467778764 33 456777774 3345565555
No 227
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.63 E-value=3.1e-07 Score=106.80 Aligned_cols=168 Identities=24% Similarity=0.321 Sum_probs=104.7
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEec--
Q 001076 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFINISM-- 1017 (1163)
Q Consensus 947 tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL-------g~pfi~Id~-- 1017 (1163)
.|.-+.|++..+..|.-... ...-.++||.|+.|||||+++++|+..| |++|- ++.
T Consensus 15 pf~aivGqd~lk~aL~l~av--------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~-cdP~~ 79 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAV--------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFN-CDPDD 79 (423)
T ss_pred chhhhcCchHHHHHHhhhhc--------------ccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCC-CCCCC
Confidence 46678899998887754321 1123589999999999999999999988 23221 000
Q ss_pred c------------------------ccccccccchHH----------HHHH---HHH--HHhccCCeEEEEccccccccC
Q 001076 1018 S------------------------SITSKWFGEGEK----------YVKA---VFS--LASKIAPSVVFVDEVDSMLGR 1058 (1163)
Q Consensus 1018 s------------------------eL~s~~~Ge~E~----------~Ir~---lF~--~A~k~~PsILfIDEID~L~g~ 1058 (1163)
+ .+.....+.++. .++. .|+ ...+...+||||||+..|-
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~-- 157 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc--
Confidence 0 011111223332 2221 111 0111123799999999772
Q ss_pred CCCcchHHHHHHHHHHH--HHHhcCCcccCCCCEEEEEEeCCC-CCCCHHHHhccCcEEEecCC-CHHHHHHHHHHHHhh
Q 001076 1059 RENPGEHEAMRKMKNEF--MVNWDGLRTKDKERVLVLAATNRP-FDLDEAVVRRLPRRLMVNLP-DAPNREKIIRVILAK 1134 (1163)
Q Consensus 1059 r~s~~~~eal~~il~~L--L~~Ldgl~~k~~~~VlVIaTTN~p-~~Ld~aLlrRFd~vI~I~~P-d~eeR~eILk~ll~k 1134 (1163)
...+..+..++.+- ....+|+...-+.++++|+|+|+- ..|-+-|+.||+..+.+..| +.++|.+|++.-+.-
T Consensus 158 ---d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 158 ---DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred ---HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 22223333333331 223456655556799999999985 57889999999999998665 588899998887654
No 228
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=9.2e-07 Score=102.18 Aligned_cols=156 Identities=15% Similarity=0.106 Sum_probs=102.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcE----------------EEEecccccccccc-----chHHHHHHHHHHHh
Q 001076 982 KPCKGILLFGPPGTGKTMLAKAVATEAGANF----------------INISMSSITSKWFG-----EGEKYVKAVFSLAS 1040 (1163)
Q Consensus 982 ~p~kgVLL~GPPGTGKT~LArALA~eLg~pf----------------i~Id~seL~s~~~G-----e~E~~Ir~lF~~A~ 1040 (1163)
+.+..+||+||+|+||+++|.++|+.+-+.- ..-+-+++.--... -.-..++.+-..+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 4457899999999999999999999984310 00011121100000 11234555544443
Q ss_pred ----ccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEe
Q 001076 1041 ----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMV 1116 (1163)
Q Consensus 1041 ----k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I 1116 (1163)
....-|++||++|.|- ....|.|+..++. ++.+.++|.+|+.++.|.+.+++|+. .+.|
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTIrSRCq-~~~~ 164 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLT------------DAAANALLKTLEE----PPENTWFFLACREPARLLATLRSRCR-LHYL 164 (334)
T ss_pred hccccCCceEEEEcchHhhC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHhccc-cccC
Confidence 3345699999999882 2345667776665 34678999999999999999999995 6899
Q ss_pred cCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHH
Q 001076 1117 NLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDL 1158 (1163)
Q Consensus 1117 ~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDL 1158 (1163)
++|+.++..+.+... .++ +..+...++..+.|--+.-+
T Consensus 165 ~~~~~~~~~~~L~~~---~~~-~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 165 APPPEQYALTWLSRE---VTM-SQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred CCCCHHHHHHHHHHc---cCC-CHHHHHHHHHHcCCCHHHHH
Confidence 999988877766432 222 23445667777777555433
No 229
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.61 E-value=8.4e-07 Score=109.67 Aligned_cols=190 Identities=14% Similarity=0.207 Sum_probs=111.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Eecc---cc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN-ISMS---SI 1020 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~-Id~s---eL 1020 (1163)
..++++++|+++.++.+..++..... . ..+.+-++|+||||+|||++++.+|++++..++. ++.. ..
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~--------~-~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~ 150 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVL--------E-NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQ 150 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhccc--------c-cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccc
Confidence 46789999999999998887753211 0 1233459999999999999999999999876644 1111 00
Q ss_pred cc---------ccc---cchHHHHHHHHHHHhc----------cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHH-
Q 001076 1021 TS---------KWF---GEGEKYVKAVFSLASK----------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV- 1077 (1163)
Q Consensus 1021 ~s---------~~~---Ge~E~~Ir~lF~~A~k----------~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~- 1077 (1163)
.. ..+ ......++.++..+.. ....|||||||+.++.. . ..+ +..++.
T Consensus 151 ~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~----~~~----lq~lLr~ 221 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D----TRA----LHEILRW 221 (637)
T ss_pred ccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h----HHH----HHHHHHH
Confidence 00 001 1122334444444431 24579999999987522 1 122 222322
Q ss_pred HhcCCcccCCCCEEEEEEeC-CCC----------C----CCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCC---
Q 001076 1078 NWDGLRTKDKERVLVLAATN-RPF----------D----LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEEL--- 1137 (1163)
Q Consensus 1078 ~Ldgl~~k~~~~VlVIaTTN-~p~----------~----Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l--- 1137 (1163)
.... . ..+.+|++++ .+. . |.+++++ |. .+|.|++.......+.|+.++..+..
T Consensus 222 ~~~e---~--~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~ 295 (637)
T TIGR00602 222 KYVS---I--GRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNG 295 (637)
T ss_pred Hhhc---C--CCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccc
Confidence 1111 1 2233333332 111 1 3367776 45 47999999999999999998876421
Q ss_pred -----CChhhHHHHHHHcCCCCHHHH
Q 001076 1138 -----ASDVDLEGIANMADGYSGSDL 1158 (1163)
Q Consensus 1138 -----~~dvdl~~LA~~TeGySgaDL 1158 (1163)
..+..+..|+..+.|=-..-|
T Consensus 296 ~~~~~p~~~~l~~I~~~s~GDiRsAI 321 (637)
T TIGR00602 296 EKIKVPKKTSVELLCQGCSGDIRSAI 321 (637)
T ss_pred cccccCCHHHHHHHHHhCCChHHHHH
Confidence 123456777776665444333
No 230
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.60 E-value=4.2e-07 Score=94.47 Aligned_cols=134 Identities=22% Similarity=0.307 Sum_probs=86.5
Q ss_pred CcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC----------------------
Q 001076 953 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---------------------- 1010 (1163)
Q Consensus 953 Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~---------------------- 1010 (1163)
|++++.+.|...+.. .+-+..+||+||+|+||+++|.++|+.+-.
T Consensus 1 gq~~~~~~L~~~~~~-------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHHHHHHHC-------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred CcHHHHHHHHHHHHc-------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence 678888888887753 234467999999999999999999998822
Q ss_pred -cEEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCccc
Q 001076 1011 -NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1085 (1163)
Q Consensus 1011 -pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~----~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k 1085 (1163)
.++.++..... . .-....++.+...+... ..-|++|||+|.|- ....+.|+..|+.
T Consensus 68 ~d~~~~~~~~~~-~--~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~------------~~a~NaLLK~LEe---- 128 (162)
T PF13177_consen 68 PDFIIIKPDKKK-K--SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT------------EEAQNALLKTLEE---- 128 (162)
T ss_dssp TTEEEEETTTSS-S--SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-------------HHHHHHHHHHHHS----
T ss_pred cceEEEeccccc-c--hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh------------HHHHHHHHHHhcC----
Confidence 12333221110 0 01224556665555433 45699999999882 3344566666654
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCC
Q 001076 1086 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLP 1119 (1163)
Q Consensus 1086 ~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~P 1119 (1163)
.+.++++|.+|+.++.|.+.+++|+ ..+.|+..
T Consensus 129 pp~~~~fiL~t~~~~~il~TI~SRc-~~i~~~~l 161 (162)
T PF13177_consen 129 PPENTYFILITNNPSKILPTIRSRC-QVIRFRPL 161 (162)
T ss_dssp TTTTEEEEEEES-GGGS-HHHHTTS-EEEEE---
T ss_pred CCCCEEEEEEECChHHChHHHHhhc-eEEecCCC
Confidence 3467999999999999999999998 56776543
No 231
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=1.1e-06 Score=100.76 Aligned_cols=171 Identities=19% Similarity=0.209 Sum_probs=109.8
Q ss_pred cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE----EEEe---------cccc
Q 001076 954 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF----INIS---------MSSI 1020 (1163)
Q Consensus 954 leevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pf----i~Id---------~seL 1020 (1163)
+..+.+.+...+.. .+-+..+||+||+|+||+++|.++|+.+-+.- -.+. .+++
T Consensus 9 ~~~~~~~l~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~ 75 (319)
T PRK08769 9 QQRAYDQTVAALDA-------------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDL 75 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCE
Confidence 45666677666532 23446799999999999999999998884321 0000 1111
Q ss_pred ccc-----ccc------chHHHHHHHHHHHhccC----CeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCccc
Q 001076 1021 TSK-----WFG------EGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1085 (1163)
Q Consensus 1021 ~s~-----~~G------e~E~~Ir~lF~~A~k~~----PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k 1085 (1163)
.-- ..| -.-..|+.+...+...+ .-|++||++|.|- ....|.|+..++.
T Consensus 76 ~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEE---- 139 (319)
T PRK08769 76 QLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN------------RAACNALLKTLEE---- 139 (319)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC------------HHHHHHHHHHhhC----
Confidence 100 001 11334566655554433 3699999999882 2344566666654
Q ss_pred CCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHH
Q 001076 1086 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLK 1159 (1163)
Q Consensus 1086 ~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk 1159 (1163)
.+.++++|.+|+.++.|.+.+++|+ ..+.|..|+.++-.+.+.. .++ +..+...++.++.|--+.-+.
T Consensus 140 Pp~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~----~~~-~~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 140 PSPGRYLWLISAQPARLPATIRSRC-QRLEFKLPPAHEALAWLLA----QGV-SERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred CCCCCeEEEEECChhhCchHHHhhh-eEeeCCCcCHHHHHHHHHH----cCC-ChHHHHHHHHHcCCCHHHHHH
Confidence 3356788888999999999999999 6889999999877776653 222 333455667777776654443
No 232
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.57 E-value=1.6e-06 Score=95.77 Aligned_cols=181 Identities=19% Similarity=0.296 Sum_probs=125.8
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-C--CcEEEEeccc---
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-G--ANFINISMSS--- 1019 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL-g--~pfi~Id~se--- 1019 (1163)
.+++.+.+.++....+..+.. .....++|+|||+|+||-+.+.++.+++ | .+=..++..+
T Consensus 10 ksl~~l~~~~e~~~~Lksl~~--------------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~t 75 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLSS--------------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTT 75 (351)
T ss_pred chhhhcccHHHHHHHHHHhcc--------------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEec
Confidence 456677788888777766542 1223689999999999999999999998 3 2222222211
Q ss_pred ----------cccc--------cccchHHH-HHHHHHHHhcc---------CCeEEEEccccccccCCCCcchHHHHHHH
Q 001076 1020 ----------ITSK--------WFGEGEKY-VKAVFSLASKI---------APSVVFVDEVDSMLGRRENPGEHEAMRKM 1071 (1163)
Q Consensus 1020 ----------L~s~--------~~Ge~E~~-Ir~lF~~A~k~---------~PsILfIDEID~L~g~r~s~~~~eal~~i 1071 (1163)
+.+. -.|.-... +..+..+..+. .-.|++|-|+|.|. ...+.++++.
T Consensus 76 pS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT-----~dAQ~aLRRT 150 (351)
T KOG2035|consen 76 PSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT-----RDAQHALRRT 150 (351)
T ss_pred CCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh-----HHHHHHHHHH
Confidence 1111 12222222 33344433332 23599999999983 3456677777
Q ss_pred HHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHc
Q 001076 1072 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 1150 (1163)
Q Consensus 1072 l~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~T 1150 (1163)
+.... .++.+|..+|....+-+.+++|+ ..|.++.|+.++...++...+.++++. +..-+..||+.+
T Consensus 151 MEkYs-----------~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS 218 (351)
T KOG2035|consen 151 MEKYS-----------SNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKS 218 (351)
T ss_pred HHHHh-----------cCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHh
Confidence 66543 56788999999999999999998 679999999999999999999998876 555578899888
Q ss_pred CCCCHHH
Q 001076 1151 DGYSGSD 1157 (1163)
Q Consensus 1151 eGySgaD 1157 (1163)
+|--...
T Consensus 219 ~~nLRrA 225 (351)
T KOG2035|consen 219 NRNLRRA 225 (351)
T ss_pred cccHHHH
Confidence 8754433
No 233
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.57 E-value=1.1e-06 Score=101.64 Aligned_cols=62 Identities=21% Similarity=0.299 Sum_probs=48.3
Q ss_pred cc-cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------cEEEEec
Q 001076 948 FD-DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NFINISM 1017 (1163)
Q Consensus 948 fd-dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~-------pfi~Id~ 1017 (1163)
|+ ++.|++++++++.+++..... +.....+-++|+||||+|||+||++|++.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~--------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQ--------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 55 799999999999988864321 11223356899999999999999999999965 7777765
No 234
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.56 E-value=1.4e-07 Score=114.05 Aligned_cols=153 Identities=25% Similarity=0.306 Sum_probs=88.1
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC----------------
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------------- 1009 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg---------------- 1009 (1163)
..|.++.|+..+++.+.-.+. ...+++|.||||+|||+||+.++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~----------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA----------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc----------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 478999999988776654331 225799999999999999999986541
Q ss_pred ------------CcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHH
Q 001076 1010 ------------ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1077 (1163)
Q Consensus 1010 ------------~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~ 1077 (1163)
.||....++......+|.....-...+..| ..+|||||||+.+ +...++.+...++....
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~-----~~~~~~~L~~~LE~~~v 324 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEF-----KRSVLDALREPIEDGSI 324 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhC-----CHHHHHHHHHHHHcCcE
Confidence 122222222111111111100111133333 3489999999976 22222222222221111
Q ss_pred Hh--cCCcccCCCCEEEEEEeCCC-----C------------------CCCHHHHhccCcEEEecCCCHH
Q 001076 1078 NW--DGLRTKDKERVLVLAATNRP-----F------------------DLDEAVVRRLPRRLMVNLPDAP 1122 (1163)
Q Consensus 1078 ~L--dgl~~k~~~~VlVIaTTN~p-----~------------------~Ld~aLlrRFd~vI~I~~Pd~e 1122 (1163)
.+ .+.....+.++.+|+++|.. . .+...|++|||.++.++.++.+
T Consensus 325 ~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 325 SISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred EEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 00 11111224689999999862 1 4788899999998888876543
No 235
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=1.9e-06 Score=99.83 Aligned_cols=133 Identities=15% Similarity=0.153 Sum_probs=91.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEE---EEec--------------ccccccc--------------------
Q 001076 982 KPCKGILLFGPPGTGKTMLAKAVATEAGANFI---NISM--------------SSITSKW-------------------- 1024 (1163)
Q Consensus 982 ~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi---~Id~--------------seL~s~~-------------------- 1024 (1163)
+.+..+||+||+|+||+++|+++|+.+.+..- .-.| +++.--.
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 44578999999999999999999999854220 0000 1110000
Q ss_pred --cc---------chHHHHHHHHHHHhc----cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCC
Q 001076 1025 --FG---------EGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1089 (1163)
Q Consensus 1025 --~G---------e~E~~Ir~lF~~A~k----~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~ 1089 (1163)
-| -.-..|+.+...+.. ....|++||++|.|- ....|.|+..++. ++.+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN------------VAAANALLKTLEE----PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC------------HHHHHHHHHHhcC----CCcC
Confidence 00 112345555544432 234599999999882 3345667777764 4467
Q ss_pred EEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHH
Q 001076 1090 VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVI 1131 (1163)
Q Consensus 1090 VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~l 1131 (1163)
+++|.+|+.++.|.+++++|+ ..+.|++|+.++..+.+...
T Consensus 163 t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc
Confidence 899999999999999999999 78999999999888887653
No 236
>PRK12377 putative replication protein; Provisional
Probab=98.54 E-value=6e-07 Score=99.61 Aligned_cols=110 Identities=19% Similarity=0.274 Sum_probs=68.3
Q ss_pred HHHhcCCCCCCCCCCCcccccCc----HHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 001076 932 KKLLADVIPPSDIGVTFDDIGAL----ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 932 k~ll~~iip~~e~~~tfddI~Gl----eevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
+.+....+++.....+|+++... ..+...+..++.. |.. ...+++|+||||||||+||.+||++
T Consensus 57 ~~~~~s~i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~-------~~~-----~~~~l~l~G~~GtGKThLa~AIa~~ 124 (248)
T PRK12377 57 KILNRSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIADE-------LMT-----GCTNFVFSGKPGTGKNHLAAAIGNR 124 (248)
T ss_pred HHHHHcCCCcccccCCcCCcccCChhHHHHHHHHHHHHHH-------HHh-----cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 33445557777777789887632 2233444444322 211 1258999999999999999999999
Q ss_pred h---CCcEEEEeccccccccccch--HHHHHHHHHHHhccCCeEEEEcccccc
Q 001076 1008 A---GANFINISMSSITSKWFGEG--EKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1163)
Q Consensus 1008 L---g~pfi~Id~seL~s~~~Ge~--E~~Ir~lF~~A~k~~PsILfIDEID~L 1055 (1163)
+ |..++.++.++++....... ......++... ....+|+||||+..
T Consensus 125 l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 125 LLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred HHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 8 77888888877665321100 00111222222 35679999999644
No 237
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.54 E-value=2.6e-07 Score=116.42 Aligned_cols=188 Identities=18% Similarity=0.200 Sum_probs=105.0
Q ss_pred hHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhh---cC----CCCCCCceEEEEcCCCChHHHH
Q 001076 928 NEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFC---KG----QLTKPCKGILLFGPPGTGKTML 1000 (1163)
Q Consensus 928 ~e~ek~ll~~iip~~e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~---k~----~l~~p~kgVLL~GPPGTGKT~L 1000 (1163)
.+....+...+.| .|.|.+.+|+.+.-.+.--......+. .+ .-.+...+|||+|+||||||.+
T Consensus 438 p~i~~~L~~SiaP---------~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqL 508 (915)
T PTZ00111 438 PMIYRILLDSFAP---------SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQL 508 (915)
T ss_pred HHHHHHHHHHhCC---------eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHH
Confidence 3444555555655 688999999888544422111000000 00 1123345799999999999999
Q ss_pred HHHHHHHhC-------CcEEEEeccccccccccc--hHHHH-HHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHH
Q 001076 1001 AKAVATEAG-------ANFINISMSSITSKWFGE--GEKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRK 1070 (1163)
Q Consensus 1001 ArALA~eLg-------~pfi~Id~seL~s~~~Ge--~E~~I-r~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~ 1070 (1163)
|+++++... .++..+++..... ..+. .+-.+ .+.+. ....++++|||++.| +...+..+..
T Consensus 509 Ar~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~~le~GaLv---lAdgGtL~IDEidkm-----s~~~Q~aLlE 579 (915)
T PTZ00111 509 LHYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRAMIQPGAVV---LANGGVCCIDELDKC-----HNESRLSLYE 579 (915)
T ss_pred HHHHHHhCCccccCCCCCCccccccchhh-hcccccCcccccCCcEE---EcCCCeEEecchhhC-----CHHHHHHHHH
Confidence 999998652 3444444333211 0000 00000 00111 123479999999987 2222222222
Q ss_pred HHHHHHHHh--cCCcccCCCCEEEEEEeCCC-------------CCCCHHHHhccCcEEEe-cCCCHHHHHHHHHHHHh
Q 001076 1071 MKNEFMVNW--DGLRTKDKERVLVLAATNRP-------------FDLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILA 1133 (1163)
Q Consensus 1071 il~~LL~~L--dgl~~k~~~~VlVIaTTN~p-------------~~Ld~aLlrRFd~vI~I-~~Pd~eeR~eILk~ll~ 1133 (1163)
++.+-...+ .|+...-+.++.||||+|+. -.|++.+++|||.++.+ +.|+.+.-..|.++++.
T Consensus 580 aMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 580 VMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred HHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHH
Confidence 211110001 13333445789999999983 25779999999977554 77887777777777664
No 238
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.50 E-value=7.2e-07 Score=110.39 Aligned_cols=50 Identities=32% Similarity=0.455 Sum_probs=41.7
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN 1011 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p 1011 (1163)
.-+++++|++++++.+...+.. ..+++|+||||||||++++++++.++..
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~----------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQ----------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHc----------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 3567899999999988877742 1489999999999999999999999644
No 239
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.49 E-value=3.4e-07 Score=108.73 Aligned_cols=166 Identities=18% Similarity=0.273 Sum_probs=97.9
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-
Q 001076 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK- 1023 (1163)
Q Consensus 948 fddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~- 1023 (1163)
+..++|.....+.+.+.+... .....+++|+|++||||+++|+++.... +.+|+.++|..+...
T Consensus 138 ~~~lig~s~~~~~l~~~i~~~------------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~ 205 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEKI------------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENL 205 (445)
T ss_pred ccceeecCHHHHHHHHHHHHH------------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHH
Confidence 335666666666666655321 1123579999999999999999998776 578999999876322
Q ss_pred ----cccchHHH-------HHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEE
Q 001076 1024 ----WFGEGEKY-------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1163)
Q Consensus 1024 ----~~Ge~E~~-------Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlV 1092 (1163)
.+|..... ....|. ....++||||||+.| +...+..+.+++++-.....+.....+.++.+
T Consensus 206 ~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~~i~~l-----~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~ri 277 (445)
T TIGR02915 206 LESELFGYEKGAFTGAVKQTLGKIE---YAHGGTLFLDEIGDL-----PLNLQAKLLRFLQERVIERLGGREEIPVDVRI 277 (445)
T ss_pred HHHHhcCCCCCCcCCCccCCCCcee---ECCCCEEEEechhhC-----CHHHHHHHHHHHhhCeEEeCCCCceeeeceEE
Confidence 12211000 001111 234589999999988 22233333332222110001111112347899
Q ss_pred EEEeCCC-------CCCCHHHHhccCcEEEecCCCHHHHHH----HHHHHHhh
Q 001076 1093 LAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAK 1134 (1163)
Q Consensus 1093 IaTTN~p-------~~Ld~aLlrRFd~vI~I~~Pd~eeR~e----ILk~ll~k 1134 (1163)
|+||+.. ..+.+.|..|+ ..+.|.+|...+|.+ ++++++.+
T Consensus 278 i~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~ 329 (445)
T TIGR02915 278 VCATNQDLKRMIAEGTFREDLFYRI-AEISITIPPLRSRDGDAVLLANAFLER 329 (445)
T ss_pred EEecCCCHHHHHHcCCccHHHHHHh-ccceecCCCchhchhhHHHHHHHHHHH
Confidence 9999764 45667777777 457788888888764 44545443
No 240
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=4.3e-06 Score=96.03 Aligned_cols=144 Identities=16% Similarity=0.155 Sum_probs=98.0
Q ss_pred cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------------
Q 001076 954 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---------------------- 1011 (1163)
Q Consensus 954 leevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p---------------------- 1011 (1163)
+....+.+...+.. .+.+..+||+||.|+||+.+|.++|+.+-+.
T Consensus 8 l~~~~~~l~~~~~~-------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HP 74 (319)
T PRK06090 8 LVPVWQNWKAGLDA-------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHP 74 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCC
Confidence 45666667665532 3345689999999999999999999988331
Q ss_pred -EEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccC
Q 001076 1012 -FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD 1086 (1163)
Q Consensus 1012 -fi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~----~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~ 1086 (1163)
|+.+.... .++.+ .-..|+.+-..+... ...|++||++|.|- ....|.|+..++. +
T Consensus 75 D~~~i~p~~-~~~~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----P 135 (319)
T PRK06090 75 DLHVIKPEK-EGKSI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN------------ESASNALLKTLEE----P 135 (319)
T ss_pred CEEEEecCc-CCCcC--CHHHHHHHHHHHhhCcccCCceEEEecchhhhC------------HHHHHHHHHHhcC----C
Confidence 22221100 00111 123455554444332 34699999999882 2345667766655 3
Q ss_pred CCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHH
Q 001076 1087 KERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV 1130 (1163)
Q Consensus 1087 ~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ 1130 (1163)
+.++++|.+|+.++.|.+++++|+ ..+.|+.|+.++..+.+..
T Consensus 136 p~~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 136 APNCLFLLVTHNQKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CCCeEEEEEECChhhChHHHHhcc-eeEeCCCCCHHHHHHHHHH
Confidence 467899999999999999999999 6899999998887776653
No 241
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.47 E-value=4.4e-06 Score=92.41 Aligned_cols=164 Identities=15% Similarity=0.180 Sum_probs=94.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CcEEEEe--ccc-----cc---cccccch------HHHHHHH----HHHHhccC
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG-ANFINIS--MSS-----IT---SKWFGEG------EKYVKAV----FSLASKIA 1043 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg-~pfi~Id--~se-----L~---s~~~Ge~------E~~Ir~l----F~~A~k~~ 1043 (1163)
.-++|+||+|+|||++++.+++.+. ..++.+. ... +. ...+|.. ......+ ........
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3589999999999999999999885 2222211 111 10 0011111 1112222 12334556
Q ss_pred CeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCC--CCCC----CHHHHhccCcEEEec
Q 001076 1044 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR--PFDL----DEAVVRRLPRRLMVN 1117 (1163)
Q Consensus 1044 PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~--p~~L----d~aLlrRFd~vI~I~ 1117 (1163)
+.||+|||++.+- ... +..+....+. .......+.|+.+... ...+ ...+.+|+...+.++
T Consensus 124 ~~vliiDe~~~l~--------~~~----~~~l~~l~~~-~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~ 190 (269)
T TIGR03015 124 RALLVVDEAQNLT--------PEL----LEELRMLSNF-QTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLG 190 (269)
T ss_pred CeEEEEECcccCC--------HHH----HHHHHHHhCc-ccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCC
Confidence 7899999999762 111 1222211111 1111223333444322 1111 134667888889999
Q ss_pred CCCHHHHHHHHHHHHhhCC-----CCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1118 LPDAPNREKIIRVILAKEE-----LASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1118 ~Pd~eeR~eILk~ll~k~~-----l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
+.+.++..+++...+...+ ...+..++.|++.|.|+... |..+|
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l~ 239 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INILC 239 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHHH
Confidence 9999999999999886532 23567789999999998654 65554
No 242
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.44 E-value=1.1e-06 Score=105.15 Aligned_cols=166 Identities=22% Similarity=0.309 Sum_probs=97.5
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc-
Q 001076 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK- 1023 (1163)
Q Consensus 948 fddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~- 1023 (1163)
+.+++|.....+.+.+.+... ......+||+|++||||+++|++|.... +.+|+.++|..+...
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~------------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRL------------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred cccceecCHHHHHHHHHHHHH------------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 456777777777766655321 1223579999999999999999998876 579999999876322
Q ss_pred ----cccchHHH-------HHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEE
Q 001076 1024 ----WFGEGEKY-------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1163)
Q Consensus 1024 ----~~Ge~E~~-------Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlV 1092 (1163)
.+|..... ....|. ....+.|||||||.|- ...+..+.+++++--....+.......++.+
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~---~a~~Gtl~l~~i~~l~-----~~~q~~L~~~l~~~~~~~~~~~~~~~~~~ri 276 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFE---QADGGTLFLDEIGDMP-----LDVQTRLLRVLADGQFYRVGGYAPVKVDVRI 276 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCee---ECCCCEEEEeccccCC-----HHHHHHHHHHHhcCcEEeCCCCCeEEeeEEE
Confidence 12211110 001122 2235789999999882 2222222222211100000111111246799
Q ss_pred EEEeCCC-------CCCCHHHHhccCcEEEecCCCHHHHH----HHHHHHHhh
Q 001076 1093 LAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE----KIIRVILAK 1134 (1163)
Q Consensus 1093 IaTTN~p-------~~Ld~aLlrRFd~vI~I~~Pd~eeR~----eILk~ll~k 1134 (1163)
|+||+.. ..+.+.+..|| ..+.+.+|...+|. .++++++.+
T Consensus 277 i~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~~PpLreR~~Di~~l~~~~l~~ 328 (469)
T PRK10923 277 IAATHQNLEQRVQEGKFREDLFHRL-NVIRVHLPPLRERREDIPRLARHFLQV 328 (469)
T ss_pred EEeCCCCHHHHHHcCCchHHHHHHh-cceeecCCCcccchhhHHHHHHHHHHH
Confidence 9999753 35778888888 35777777766664 356666543
No 243
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.44 E-value=1.9e-06 Score=95.56 Aligned_cols=111 Identities=21% Similarity=0.299 Sum_probs=70.1
Q ss_pred HHHHhcCCCCCCCCCCCcccccCcH-H---HHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 001076 931 EKKLLADVIPPSDIGVTFDDIGALE-N---VKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 1006 (1163)
Q Consensus 931 ek~ll~~iip~~e~~~tfddI~Gle-e---vk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~ 1006 (1163)
++.+....+++.....+|+++.... . +...+.+++.. |. ....+++|+|++|||||+|+.+||+
T Consensus 54 ~~~~~~s~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~-------~~-----~~~~~~~l~G~~GtGKThLa~aia~ 121 (244)
T PRK07952 54 QRTFNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEE-------FD-----GNIASFIFSGKPGTGKNHLAAAICN 121 (244)
T ss_pred HHHHHHcCCCccccCCccccccCCCchHHHHHHHHHHHHHh-------hc-----cCCceEEEECCCCCCHHHHHHHHHH
Confidence 3344455677766678899876332 2 33333333321 11 1124899999999999999999999
Q ss_pred Hh---CCcEEEEeccccccccccc---hHHHHHHHHHHHhccCCeEEEEcccccc
Q 001076 1007 EA---GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1163)
Q Consensus 1007 eL---g~pfi~Id~seL~s~~~Ge---~E~~Ir~lF~~A~k~~PsILfIDEID~L 1055 (1163)
++ +..++.++.++++...... .......++.... ...+|+|||++..
T Consensus 122 ~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 122 ELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred HHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 98 7888888888876533211 1111223333332 4679999999865
No 244
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.42 E-value=9.4e-07 Score=94.06 Aligned_cols=180 Identities=19% Similarity=0.291 Sum_probs=96.4
Q ss_pred cCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---cEEEEec-cc--------
Q 001076 952 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---NFINISM-SS-------- 1019 (1163)
Q Consensus 952 ~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~---pfi~Id~-se-------- 1019 (1163)
.|.++..+.|.+++.. .+...++|+||.|+|||+|++.+.+.+.- ..+.++. ..
T Consensus 2 ~gR~~el~~l~~~l~~--------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 67 (234)
T PF01637_consen 2 FGREKELEKLKELLES--------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRS 67 (234)
T ss_dssp -S-HHHHHHHHHCHHH----------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHH
Confidence 4666666777665531 12357999999999999999999998832 1222211 11
Q ss_pred c-------------ccc-------------cccchHHHHHHHHHHHhccC-CeEEEEccccccc-cCCCCcchHHHHHHH
Q 001076 1020 I-------------TSK-------------WFGEGEKYVKAVFSLASKIA-PSVVFVDEVDSML-GRRENPGEHEAMRKM 1071 (1163)
Q Consensus 1020 L-------------~s~-------------~~Ge~E~~Ir~lF~~A~k~~-PsILfIDEID~L~-g~r~s~~~~eal~~i 1071 (1163)
+ ... ........+..++....+.. ..||+|||++.+. ..... ..+
T Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~-------~~~ 140 (234)
T PF01637_consen 68 FIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEED-------KDF 140 (234)
T ss_dssp HHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTT-------HHH
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccch-------HHH
Confidence 0 000 00122345566666655543 4899999999996 22211 123
Q ss_pred HHHHHHHhcCCcccCCCCEEEEEEeCCCC------CCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCC-C-CChhhH
Q 001076 1072 KNEFMVNWDGLRTKDKERVLVLAATNRPF------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE-L-ASDVDL 1143 (1163)
Q Consensus 1072 l~~LL~~Ldgl~~k~~~~VlVIaTTN~p~------~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~-l-~~dvdl 1143 (1163)
+..|...++.... ..++.+|.++.... .-...+..|+.. +.+++.+.++..++++..+.+.. + .++.++
T Consensus 141 ~~~l~~~~~~~~~--~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~ 217 (234)
T PF01637_consen 141 LKSLRSLLDSLLS--QQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDI 217 (234)
T ss_dssp HHHHHHHHHH------TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHH
T ss_pred HHHHHHHHhhccc--cCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHH
Confidence 3334444433222 24455554443311 112234557755 99999999999999999887651 1 378889
Q ss_pred HHHHHHcCCCCH
Q 001076 1144 EGIANMADGYSG 1155 (1163)
Q Consensus 1144 ~~LA~~TeGySg 1155 (1163)
+.+...|.|+-+
T Consensus 218 ~~i~~~~gG~P~ 229 (234)
T PF01637_consen 218 EEIYSLTGGNPR 229 (234)
T ss_dssp HHHHHHHTT-HH
T ss_pred HHHHHHhCCCHH
Confidence 999999999754
No 245
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=98.42 E-value=4e-07 Score=107.24 Aligned_cols=82 Identities=26% Similarity=0.340 Sum_probs=70.8
Q ss_pred ceeeecceeEEccCCccceeecCCC--CCccceEEEEeecCCcceEEEEEecCCceEEEc--CeecCCCceEEeeCCCEE
Q 001076 146 HLSMTGAVFTVGHNRQCDLYLKDPS--ISKNLCRLRRIENGGPSGALLEITGGKGEVEVN--GNVHPKDSQVVLRGGDEL 221 (1163)
Q Consensus 146 ~~~i~~~~~t~G~~~~cd~~l~d~~--~s~~~c~l~~~~~~g~~~a~le~~~~~G~v~vN--g~~~~k~~~~~L~~gDev 221 (1163)
.+.+....++|||+..||+.+.|+. +|..||+|... +|. .+|+|.|+||| +|| |..+.++..+.|+.||+|
T Consensus 18 ~~~f~~~~~~IGR~~~~d~~l~d~~~~VS~~Ha~I~~~--~g~--~~l~DlStNGT-~VN~sg~~l~~~~~~~L~~GD~I 92 (396)
T TIGR03354 18 QKTFGTNGGTIGRSEDCDWVLPDPERHVSGRHARIRYR--DGA--YLLTDLSTNGV-FLNGSGSPLGRGNPVRLEQGDRL 92 (396)
T ss_pred EEEECCCCEEEecCCCCCEEeCCCCCCcchhhcEEEEE--CCE--EEEEECCCCCe-EECCCCCCCCCCCceEcCCCCEE
Confidence 5667778899999999999999999 99999999965 343 78999988999 799 999999999999999999
Q ss_pred EEccCCCeeEE
Q 001076 222 VFSPSGKHSYI 232 (1163)
Q Consensus 222 ~f~~~~~~ayi 232 (1163)
.|+...-..++
T Consensus 93 ~iG~~~lrv~~ 103 (396)
T TIGR03354 93 RLGDYEIRVSL 103 (396)
T ss_pred EECCEEEEEEe
Confidence 99876444443
No 246
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.6e-07 Score=110.47 Aligned_cols=149 Identities=24% Similarity=0.303 Sum_probs=87.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---------CcEE-E
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------ANFI-N 1014 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg---------~pfi-~ 1014 (1163)
..+|.||.|++.+|+.+..... + .+++||+|||||||||||+.+..-+- +..+ .
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA-----------G-----gHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s 238 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA-----------G-----GHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHS 238 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh-----------c-----CCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhh
Confidence 3478999999999999977652 2 26899999999999999998754331 1100 0
Q ss_pred Eecccccc-------ccccch--HHHHHHHHH--------HHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHH
Q 001076 1015 ISMSSITS-------KWFGEG--EKYVKAVFS--------LASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1077 (1163)
Q Consensus 1015 Id~seL~s-------~~~Ge~--E~~Ir~lF~--------~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~ 1077 (1163)
++. .+.. ..|..+ +.....+.- +....-.+||||||+-.+ -+.+++.|.+
T Consensus 239 ~~g-~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef------------~~~iLe~LR~ 305 (490)
T COG0606 239 LAG-DLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEF------------KRSILEALRE 305 (490)
T ss_pred hcc-cccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchh------------hHHHHHHHhC
Confidence 110 0000 000000 000111110 011112369999999643 3466676665
Q ss_pred HhcCCc---------ccCCCCEEEEEEeCC-----------------------CCCCCHHHHhccCcEEEecCCCHH
Q 001076 1078 NWDGLR---------TKDKERVLVLAATNR-----------------------PFDLDEAVVRRLPRRLMVNLPDAP 1122 (1163)
Q Consensus 1078 ~Ldgl~---------~k~~~~VlVIaTTN~-----------------------p~~Ld~aLlrRFd~vI~I~~Pd~e 1122 (1163)
=|+.-. ..-+.++.+|+++|. ...|...|++|||..+.++.++..
T Consensus 306 PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~ 382 (490)
T COG0606 306 PLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAG 382 (490)
T ss_pred ccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHH
Confidence 543211 112357888999986 135667888899998888877633
No 247
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.34 E-value=6e-07 Score=90.41 Aligned_cols=125 Identities=22% Similarity=0.390 Sum_probs=74.0
Q ss_pred CcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEeccccccccccchH
Q 001076 953 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITSKWFGEGE 1029 (1163)
Q Consensus 953 Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg---~pfi~Id~seL~s~~~Ge~E 1029 (1163)
|.....+.+++.+.... ....+|||+|++||||+++|++|.+..+ .+|+.++|..+.
T Consensus 2 G~S~~~~~l~~~l~~~a------------~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------- 61 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLA------------KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------- 61 (138)
T ss_dssp -SCHHHHHHHHHHHHHH------------CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC--------
T ss_pred CCCHHHHHHHHHHHHHh------------CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc--------
Confidence 44555666666554311 1225799999999999999999988774 467777766533
Q ss_pred HHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCC-------CCC
Q 001076 1030 KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDL 1102 (1163)
Q Consensus 1030 ~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p-------~~L 1102 (1163)
..++..+ ..+.|||+|||.|- ...+ ..++..+... ...++.+|+++..+ ..+
T Consensus 62 ---~~~l~~a---~~gtL~l~~i~~L~-----~~~Q-------~~L~~~l~~~---~~~~~RlI~ss~~~l~~l~~~~~~ 120 (138)
T PF14532_consen 62 ---AELLEQA---KGGTLYLKNIDRLS-----PEAQ-------RRLLDLLKRQ---ERSNVRLIASSSQDLEELVEEGRF 120 (138)
T ss_dssp ---HHHHHHC---TTSEEEEECGCCS------HHHH-------HHHHHHHHHC---TTTTSEEEEEECC-CCCHHHHSTH
T ss_pred ---HHHHHHc---CCCEEEECChHHCC-----HHHH-------HHHHHHHHhc---CCCCeEEEEEeCCCHHHHhhccch
Confidence 3344444 66899999999882 1122 2222222221 13566888887543 246
Q ss_pred CHHHHhccCcEEEecCC
Q 001076 1103 DEAVVRRLPRRLMVNLP 1119 (1163)
Q Consensus 1103 d~aLlrRFd~vI~I~~P 1119 (1163)
++.|..||.. +.+.+|
T Consensus 121 ~~~L~~~l~~-~~i~lP 136 (138)
T PF14532_consen 121 SPDLYYRLSQ-LEIHLP 136 (138)
T ss_dssp HHHHHHHCST-CEEEE-
T ss_pred hHHHHHHhCC-CEEeCC
Confidence 6777778752 334444
No 248
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.32 E-value=4.8e-06 Score=99.26 Aligned_cols=156 Identities=20% Similarity=0.269 Sum_probs=90.0
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc---
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--- 1023 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~--- 1023 (1163)
.++|.......+.+.+... ......+|++|++||||+++|+++.... +.+|+.++|..+...
T Consensus 144 ~ii~~S~~~~~~~~~~~~~------------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~ 211 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKI------------ALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLE 211 (457)
T ss_pred ceecccHHHhHHHHHHHHH------------cCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHH
Confidence 4566666555555544321 1122579999999999999999998765 579999999876322
Q ss_pred --cccchHHH-------HHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEE
Q 001076 1024 --WFGEGEKY-------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1094 (1163)
Q Consensus 1024 --~~Ge~E~~-------Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIa 1094 (1163)
.+|..... ....|. ....++|||||||.|- ...+..+..++++-.....+.....+.++.+|+
T Consensus 212 ~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~ld~i~~l~-----~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~ 283 (457)
T PRK11361 212 SELFGHEKGAFTGAQTLRQGLFE---RANEGTLLLDEIGEMP-----LVLQAKLLRILQEREFERIGGHQTIKVDIRIIA 283 (457)
T ss_pred HHhcCCCCCCCCCCCCCCCCceE---ECCCCEEEEechhhCC-----HHHHHHHHHHHhcCcEEeCCCCceeeeceEEEE
Confidence 22211100 001222 2235799999999882 222222222211110000011111124689999
Q ss_pred EeCCC-------CCCCHHHHhccCcEEEecCCCHHHHHH
Q 001076 1095 ATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK 1126 (1163)
Q Consensus 1095 TTN~p-------~~Ld~aLlrRFd~vI~I~~Pd~eeR~e 1126 (1163)
||+.. ..+.+.+..|+ ..+.+..|...+|.+
T Consensus 284 ~t~~~l~~~~~~g~~~~~l~~~l-~~~~i~~ppLreR~~ 321 (457)
T PRK11361 284 ATNRDLQAMVKEGTFREDLFYRL-NVIHLILPPLRDRRE 321 (457)
T ss_pred eCCCCHHHHHHcCCchHHHHHHh-ccceecCCChhhchh
Confidence 99864 35666777777 357888888887753
No 249
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.31 E-value=9.2e-06 Score=90.25 Aligned_cols=88 Identities=23% Similarity=0.320 Sum_probs=57.3
Q ss_pred CCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCC-------------CCCCCHHHHhc
Q 001076 1043 APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-------------PFDLDEAVVRR 1109 (1163)
Q Consensus 1043 ~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~-------------p~~Ld~aLlrR 1109 (1163)
-|+||||||++-| . -..+.-|-..++.- -.+ +||+++|+ |+-+++.++.|
T Consensus 296 vPGVLFIDEVhML-----D-------iEcFTyL~kalES~----iaP-ivifAsNrG~~~irGt~d~~sPhGip~dllDR 358 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-----D-------IECFTYLHKALESP----IAP-IVIFASNRGMCTIRGTEDILSPHGIPPDLLDR 358 (456)
T ss_pred cCcceEeeehhhh-----h-------hHHHHHHHHHhcCC----CCc-eEEEecCCcceeecCCcCCCCCCCCCHHHhhh
Confidence 5899999999966 1 11122222223221 123 55666665 67888999999
Q ss_pred cCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHH
Q 001076 1110 LPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIAN 1148 (1163)
Q Consensus 1110 Fd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~ 1148 (1163)
+ .+|..-+.+.++.++|++.-.+.+++. ++..+..|+.
T Consensus 359 l-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~ 397 (456)
T KOG1942|consen 359 L-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAE 397 (456)
T ss_pred e-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHh
Confidence 8 677777788888999999888776654 4444555554
No 250
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.30 E-value=1.2e-06 Score=105.83 Aligned_cols=153 Identities=25% Similarity=0.298 Sum_probs=86.7
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--EEEEeccccc--
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN--FINISMSSIT-- 1021 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p--fi~Id~seL~-- 1021 (1163)
..|.++.|+..+++.+.-.+ .....++|+||+|+|||+|++.++..+.-. -..+....+.
T Consensus 188 ~d~~~v~Gq~~~~~al~laa----------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~ 251 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA----------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSL 251 (506)
T ss_pred cCeEEEECcHHHHhhhheec----------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhh
Confidence 36778888877776653211 123679999999999999999998765210 0011111110
Q ss_pred -----------cc-------------cccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHH
Q 001076 1022 -----------SK-------------WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1077 (1163)
Q Consensus 1022 -----------s~-------------~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~ 1077 (1163)
.. .+|.....-...+..|.. ++||||||+.+ +...++.++..+++-..
T Consensus 252 ~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-----~~~~~~~L~~~LE~g~v 323 (506)
T PRK09862 252 VNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-----ERRTLDALREPIESGQI 323 (506)
T ss_pred hccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-----CHHHHHHHHHHHHcCcE
Confidence 00 111111011123444433 89999999866 22222222222211111
Q ss_pred Hhc--CCcccCCCCEEEEEEeCCCC---------------------CCCHHHHhccCcEEEecCCCHH
Q 001076 1078 NWD--GLRTKDKERVLVLAATNRPF---------------------DLDEAVVRRLPRRLMVNLPDAP 1122 (1163)
Q Consensus 1078 ~Ld--gl~~k~~~~VlVIaTTN~p~---------------------~Ld~aLlrRFd~vI~I~~Pd~e 1122 (1163)
.+. +.....+.++.+|+|+|+.. .|...+++||+..+.++.|+.+
T Consensus 324 ~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 324 HLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred EEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 111 11112346899999999742 4778999999999999988644
No 251
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.27 E-value=1.5e-06 Score=97.77 Aligned_cols=161 Identities=19% Similarity=0.208 Sum_probs=106.6
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE------EEE
Q 001076 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------INI 1015 (1163)
Q Consensus 942 ~e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pf------i~I 1015 (1163)
+.....++++++++++...+.++... . + .+++|+|||||||||....+.|..+-.+. ..+
T Consensus 34 kyrP~~l~dv~~~~ei~st~~~~~~~----------~---~-lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lel 99 (360)
T KOG0990|consen 34 KYRPPFLGIVIKQEPIWSTENRYSGM----------P---G-LPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLEL 99 (360)
T ss_pred CCCCchhhhHhcCCchhhHHHHhccC----------C---C-CCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHh
Confidence 33455678899999999888887432 1 1 23899999999999999999999885531 122
Q ss_pred eccccccccccchHHHHHHHHHHHhc-------cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCC
Q 001076 1016 SMSSITSKWFGEGEKYVKAVFSLASK-------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1088 (1163)
Q Consensus 1016 d~seL~s~~~Ge~E~~Ir~lF~~A~k-------~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~ 1088 (1163)
+.++-.+ .+-. ..-...|..++. ..+..|++||.|.+. ...+.++++++..+ ..
T Consensus 100 naSd~rg--id~v-r~qi~~fast~~~~~fst~~~fKlvILDEADaMT-----~~AQnALRRviek~-----------t~ 160 (360)
T KOG0990|consen 100 NASDDRG--IDPV-RQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT-----RDAQNALRRVIEKY-----------TA 160 (360)
T ss_pred hccCccC--Ccch-HHHHHHHHhhccceeccccCceeEEEecchhHhh-----HHHHHHHHHHHHHh-----------cc
Confidence 2222111 1111 111234444442 256899999999883 33455666544433 24
Q ss_pred CEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCC
Q 001076 1089 RVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE 1136 (1163)
Q Consensus 1089 ~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~ 1136 (1163)
++.++..+|.+..+.+++++|| -.+.+.+.+..+....+.+++....
T Consensus 161 n~rF~ii~n~~~ki~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~e~ 207 (360)
T KOG0990|consen 161 NTRFATISNPPQKIHPAQQSRC-TRFRFAPLTMAQQTERQSHIRESEQ 207 (360)
T ss_pred ceEEEEeccChhhcCchhhccc-ccCCCCCCChhhhhhHHHHHHhcch
Confidence 5677777899999999999998 4677777777777777777776543
No 252
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.26 E-value=1.4e-05 Score=90.43 Aligned_cols=166 Identities=14% Similarity=0.188 Sum_probs=99.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecccc----------cc---ccc---cchHHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSI----------TS---KWF---GEGEKYVKAVFSLA 1039 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---------g~pfi~Id~seL----------~s---~~~---Ge~E~~Ir~lF~~A 1039 (1163)
.++||+|++|+|||++++..+... .+|++.+.++.- .. ..+ ....+.-.++....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998665 357888887541 10 001 11122333455666
Q ss_pred hccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCC--CCCCCHHHHhccCcEEEec
Q 001076 1040 SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR--PFDLDEAVVRRLPRRLMVN 1117 (1163)
Q Consensus 1040 ~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~--p~~Ld~aLlrRFd~vI~I~ 1117 (1163)
+...+-+|+||||+.++.... ..-+.+++.+... ...-.-+++.+||-.. .-.-|+.+.+||. .+.++
T Consensus 142 r~~~vrmLIIDE~H~lLaGs~-----~~qr~~Ln~LK~L----~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~-~~~Lp 211 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLAGSY-----RKQREFLNALKFL----GNELQIPIVGVGTREAYRALRTDPQLASRFE-PFELP 211 (302)
T ss_pred HHcCCcEEEeechHHHhcccH-----HHHHHHHHHHHHH----hhccCCCeEEeccHHHHHHhccCHHHHhccC-CccCC
Confidence 777889999999999763221 2223344433332 2222345666666532 2345688889994 44454
Q ss_pred C-CCHHHHHHHHHHHHhhCC------CCChhhHHHHHHHcCCCCHHHHHh
Q 001076 1118 L-PDAPNREKIIRVILAKEE------LASDVDLEGIANMADGYSGSDLKV 1160 (1163)
Q Consensus 1118 ~-Pd~eeR~eILk~ll~k~~------l~~dvdl~~LA~~TeGySgaDLk~ 1160 (1163)
. -.-++-..++..+-...+ +....-...|-.+|+|+.|.=.+.
T Consensus 212 ~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 212 RWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred CCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 3 223444556666655433 233333577888999999864443
No 253
>PRK08181 transposase; Validated
Probab=98.25 E-value=4.5e-06 Score=93.82 Aligned_cols=69 Identities=23% Similarity=0.374 Sum_probs=49.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccc-hHHHHHHHHHHHhccCCeEEEEcccccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~~~Ge-~E~~Ir~lF~~A~k~~PsILfIDEID~L 1055 (1163)
.+++|+||||||||+||.++++++ |..++.+++.+++...... .+......+... ..+.+|+|||++.+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~ 179 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYV 179 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccc
Confidence 579999999999999999999766 7888888888776543111 111222333332 24679999999866
No 254
>PRK15115 response regulator GlrR; Provisional
Probab=98.23 E-value=8.9e-06 Score=96.75 Aligned_cols=141 Identities=23% Similarity=0.368 Sum_probs=83.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc-----ccchHHH-------HHHHHHHHhccCCeEEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEKY-------VKAVFSLASKIAPSVVFV 1049 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~~-----~Ge~E~~-------Ir~lF~~A~k~~PsILfI 1049 (1163)
..++|+|++|+||+++|+++.+.. +.+|+.++|..+...+ +|...+. ...+|. ....++|||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l 234 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQ---AAEGGTLFL 234 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEE---ECCCCEEEE
Confidence 479999999999999999998876 5799999998763221 1111000 001111 223579999
Q ss_pred ccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCC-------CCCCHHHHhccCcEEEecCCCHH
Q 001076 1050 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 1122 (1163)
Q Consensus 1050 DEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~I~~Pd~e 1122 (1163)
||||.| +...+..+..++.+-....-+.......++.+|+||+.. ..+.+.+..|+ ..+.+.+|...
T Consensus 235 ~~i~~l-----~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l-~~~~i~lPpLr 308 (444)
T PRK15115 235 DEIGDM-----PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRL-NVVSLKIPALA 308 (444)
T ss_pred EccccC-----CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhh-ceeeecCCChH
Confidence 999988 222233322222211100001111112478999999753 24555566666 46788889988
Q ss_pred HHHH----HHHHHHhh
Q 001076 1123 NREK----IIRVILAK 1134 (1163)
Q Consensus 1123 eR~e----ILk~ll~k 1134 (1163)
+|.+ ++++++.+
T Consensus 309 ~R~eDi~~l~~~~l~~ 324 (444)
T PRK15115 309 ERTEDIPLLANHLLRQ 324 (444)
T ss_pred hccccHHHHHHHHHHH
Confidence 8853 44555543
No 255
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.21 E-value=3.4e-05 Score=94.00 Aligned_cols=192 Identities=18% Similarity=0.269 Sum_probs=112.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc---
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT--- 1021 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~--- 1021 (1163)
..+.+++....+..++++.++...+. . ..+.+-+||+||+|+|||++++.||+++|+.++....+...
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~------~---~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~ 85 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFS------G---SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRES 85 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhc------c---CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcccc
Confidence 45677888888888888888764221 1 12234589999999999999999999999998876433221
Q ss_pred ----cccccc---hHHHHHH--HH-----HHHhc-----------cCCeEEEEccccccccCCCCcchHHHHHHHHHHHH
Q 001076 1022 ----SKWFGE---GEKYVKA--VF-----SLASK-----------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1163)
Q Consensus 1022 ----s~~~Ge---~E~~Ir~--lF-----~~A~k-----------~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL 1076 (1163)
..+.+. ...++.+ .| ..++. ..+.||+|+|+-.++... ....+.++..++
T Consensus 86 ~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~-----~~~f~~~L~~~l 160 (519)
T PF03215_consen 86 DNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD-----TSRFREALRQYL 160 (519)
T ss_pred ccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh-----HHHHHHHHHHHH
Confidence 011111 0100111 12 11111 246799999997654211 133333333333
Q ss_pred HHhcCCcccCCC-CEEEEEE-e------CCC--------CCCCHHHHhcc-CcEEEecCCCHHHHHHHHHHHHhhC----
Q 001076 1077 VNWDGLRTKDKE-RVLVLAA-T------NRP--------FDLDEAVVRRL-PRRLMVNLPDAPNREKIIRVILAKE---- 1135 (1163)
Q Consensus 1077 ~~Ldgl~~k~~~-~VlVIaT-T------N~p--------~~Ld~aLlrRF-d~vI~I~~Pd~eeR~eILk~ll~k~---- 1135 (1163)
.. ... ++++|.| + |.. ..+.+.++... -.+|.|.+-...-..+.|+.++..+
T Consensus 161 ~~-------~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~ 233 (519)
T PF03215_consen 161 RS-------SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSS 233 (519)
T ss_pred Hc-------CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhh
Confidence 21 223 7888887 1 111 14566776632 2578999988888888888888765
Q ss_pred ----CCCChh-hHHHHHHHcCCCCHHH
Q 001076 1136 ----ELASDV-DLEGIANMADGYSGSD 1157 (1163)
Q Consensus 1136 ----~l~~dv-dl~~LA~~TeGySgaD 1157 (1163)
...... .++.|+..+.|--.+.
T Consensus 234 ~~~~~~p~~~~~l~~I~~~s~GDIRsA 260 (519)
T PF03215_consen 234 SGKNKVPDKQSVLDSIAESSNGDIRSA 260 (519)
T ss_pred cCCccCCChHHHHHHHHHhcCchHHHH
Confidence 112222 3778887776543333
No 256
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=2.3e-05 Score=92.06 Aligned_cols=184 Identities=21% Similarity=0.284 Sum_probs=121.4
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccccc--
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS-- 1022 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL-----g~pfi~Id~seL~s-- 1022 (1163)
.+.|.+..+..+++++...+. .+....+.+.|.||||||.+..-+...+ ....++++|.+|..
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle----------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLE----------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CccchHHHHHHHHHHHHhhhh----------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 677899999999999877554 2234679999999999999888776655 23457888865321
Q ss_pred ----c----c----ccch-HHHHHHHHHHHh-cc-CCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCC
Q 001076 1023 ----K----W----FGEG-EKYVKAVFSLAS-KI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 1087 (1163)
Q Consensus 1023 ----~----~----~Ge~-E~~Ir~lF~~A~-k~-~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~ 1087 (1163)
+ + .+.+ +......|..-. .. .+-||++||+|.|..+... ++-+ +.+|+.+ .+
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~---------vLy~-lFewp~l---p~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT---------VLYT-LFEWPKL---PN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc---------eeee-ehhcccC---Cc
Confidence 1 1 1111 111222332221 11 4789999999999732211 1111 1234443 45
Q ss_pred CCEEEEEEeCCCCCCCHHHHh---c---cCcEEEecCCCHHHHHHHHHHHHhhCCCCC--hhhHHHHHHHcCCCCHH
Q 001076 1088 ERVLVLAATNRPFDLDEAVVR---R---LPRRLMVNLPDAPNREKIIRVILAKEELAS--DVDLEGIANMADGYSGS 1156 (1163)
Q Consensus 1088 ~~VlVIaTTN~p~~Ld~aLlr---R---Fd~vI~I~~Pd~eeR~eILk~ll~k~~l~~--dvdl~~LA~~TeGySga 1156 (1163)
.++++|+.+|..+.-|-.|.+ | -+.++.|++.+.++..+||+.-+....... +..++.+|+...|.||.
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGD 364 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGD 364 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchh
Confidence 789999999986654433333 2 356899999999999999999988765443 34578889999999884
No 257
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.20 E-value=7.3e-06 Score=93.72 Aligned_cols=69 Identities=23% Similarity=0.389 Sum_probs=48.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccch-HHHHHHHHHHHhccCCeEEEEccccc
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDS 1054 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~~~Ge~-E~~Ir~lF~~A~k~~PsILfIDEID~ 1054 (1163)
.++++|+||+|+|||+||.|||+++ |.++..+.+++++....... ...+...+.... ...||+||||..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~ 228 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGA 228 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCC
Confidence 4689999999999999999999998 88888888887654331110 011222333322 457999999974
No 258
>PF13173 AAA_14: AAA domain
Probab=98.18 E-value=6.9e-06 Score=81.69 Aligned_cols=118 Identities=20% Similarity=0.303 Sum_probs=69.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP 1062 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg--~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~ 1062 (1163)
+-++|+||.|+|||+|++.+++.+. -.++.+++.+.......... +...|.........+||||||+.+ +
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~------~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL------P 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh------c
Confidence 4689999999999999999999886 77888887664432111111 223333322236789999999876 1
Q ss_pred chHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCC----CCCHHHHhccCcEEEecCCCHHH
Q 001076 1063 GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF----DLDEAVVRRLPRRLMVNLPDAPN 1123 (1163)
Q Consensus 1063 ~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~----~Ld~aLlrRFd~vI~I~~Pd~ee 1123 (1163)
... ..+..+. +.. .++-+|.|+.... ...+.+..|+ ..+.+.+.+..|
T Consensus 75 ~~~----~~lk~l~---d~~-----~~~~ii~tgS~~~~l~~~~~~~l~gr~-~~~~l~Plsf~E 126 (128)
T PF13173_consen 75 DWE----DALKFLV---DNG-----PNIKIILTGSSSSLLSKDIAESLAGRV-IEIELYPLSFRE 126 (128)
T ss_pred cHH----HHHHHHH---Hhc-----cCceEEEEccchHHHhhcccccCCCeE-EEEEECCCCHHH
Confidence 111 2222222 211 2355555554432 2334444566 467777777654
No 259
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=1.3e-05 Score=92.46 Aligned_cols=132 Identities=17% Similarity=0.202 Sum_probs=86.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC-------------------------cEEEEecccc---cccc-ccchHHHH
Q 001076 982 KPCKGILLFGPPGTGKTMLAKAVATEAGA-------------------------NFINISMSSI---TSKW-FGEGEKYV 1032 (1163)
Q Consensus 982 ~p~kgVLL~GPPGTGKT~LArALA~eLg~-------------------------pfi~Id~seL---~s~~-~Ge~E~~I 1032 (1163)
+.+..+||+||+|+|||++|+.+|+.+.+ .|+.++...- .++. ..-.-..|
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 44567999999999999999999998743 1233322100 0000 00123456
Q ss_pred HHHHHHHhcc----CCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHh
Q 001076 1033 KAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR 1108 (1163)
Q Consensus 1033 r~lF~~A~k~----~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr 1108 (1163)
+.+...+... ...|++||+++.|- ....+.++..++... ..+.+|.+|+.++.+.+.+++
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld------------~~a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN------------LQAANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC------------HHHHHHHHHHHHhCc----CCCEEEEEeCChHhChHHHHH
Confidence 6666666543 34699999999872 123344555554432 236677788888899999999
Q ss_pred ccCcEEEecCCCHHHHHHHHHH
Q 001076 1109 RLPRRLMVNLPDAPNREKIIRV 1130 (1163)
Q Consensus 1109 RFd~vI~I~~Pd~eeR~eILk~ 1130 (1163)
|+ .++.|++|+.++..+.+..
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 98 6888999999887777654
No 260
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.15 E-value=2e-05 Score=96.21 Aligned_cols=185 Identities=21% Similarity=0.269 Sum_probs=119.7
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEeccc
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSS 1019 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL----------g~pfi~Id~se 1019 (1163)
.+.+.+....++..++...+.. ++ ....+.+.|-||||||.++..+.+.+ .|.|+.||+-.
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~-----~~----~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~ 467 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISD-----QG----LGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLR 467 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCC-----CC----CceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEccee
Confidence 3446677777777777654431 01 11369999999999999999998765 57889998755
Q ss_pred cccc----------cccch------HHHHHHHHHH-HhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCC
Q 001076 1020 ITSK----------WFGEG------EKYVKAVFSL-ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1082 (1163)
Q Consensus 1020 L~s~----------~~Ge~------E~~Ir~lF~~-A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl 1082 (1163)
|.+. +.|+. -..+..-|.. .-+..++||+|||+|.|+.+. +..|+.+-..
T Consensus 468 l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~-------------QdVlYn~fdW 534 (767)
T KOG1514|consen 468 LASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS-------------QDVLYNIFDW 534 (767)
T ss_pred ecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc-------------HHHHHHHhcC
Confidence 4321 11211 1123333331 123457899999999997443 2233333344
Q ss_pred cccCCCCEEEEEEeCCCCCCCHHHH----hccC-cEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHH
Q 001076 1083 RTKDKERVLVLAATNRPFDLDEAVV----RRLP-RRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGS 1156 (1163)
Q Consensus 1083 ~~k~~~~VlVIaTTN~p~~Ld~aLl----rRFd-~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySga 1156 (1163)
+...+.+++||+.+|..+.....|. +|++ .+|.|.+.+.++..+|+..-+..........++.+|+.-...||.
T Consensus 535 pt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGD 613 (767)
T KOG1514|consen 535 PTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGD 613 (767)
T ss_pred CcCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhcccc
Confidence 5556789999999987654333333 3554 378999999999999999988776444455566667666666663
No 261
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.13 E-value=4.5e-06 Score=88.24 Aligned_cols=69 Identities=28% Similarity=0.472 Sum_probs=46.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccch-HHHHHHHHHHHhccCCeEEEEccccc
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDS 1054 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~~~Ge~-E~~Ir~lF~~A~k~~PsILfIDEID~ 1054 (1163)
..+++|+||+|+|||+||.++++++ |.++..++.++++....... .......+.... ...+|+|||+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 4689999999999999999999887 89999999888765432211 111222333333 357999999963
No 262
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.12 E-value=8.8e-06 Score=93.90 Aligned_cols=111 Identities=21% Similarity=0.339 Sum_probs=66.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccc---hHHHHHHHHHHHhccCCeEEEEccccccccC
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVVFVDEVDSMLGR 1058 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~~~Ge---~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~ 1058 (1163)
.+++|+||+|+|||+||.+||+++ |..++.++..+++...... ........+... ....+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~-- 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEK-- 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCC--
Confidence 689999999999999999999998 7889999988876543110 000111112222 245799999997552
Q ss_pred CCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCC-C----CCCHHHHhcc
Q 001076 1059 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-F----DLDEAVVRRL 1110 (1163)
Q Consensus 1059 r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p-~----~Ld~aLlrRF 1110 (1163)
..+...+.+..+++..+.. +--+|.|||.+ . .+++.+++|+
T Consensus 260 -~t~~~~~~Lf~iin~R~~~----------~k~tIiTSNl~~~el~~~~~eri~SRL 305 (329)
T PRK06835 260 -ITEFSKSELFNLINKRLLR----------QKKMIISTNLSLEELLKTYSERISSRL 305 (329)
T ss_pred -CCHHHHHHHHHHHHHHHHC----------CCCEEEECCCCHHHHHHHHhHHHHHHH
Confidence 1222233334444443311 12356677753 2 2456777775
No 263
>PRK06526 transposase; Provisional
Probab=98.10 E-value=6.1e-06 Score=92.05 Aligned_cols=70 Identities=24% Similarity=0.360 Sum_probs=47.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccc-hHHHHHHHHHHHhccCCeEEEEcccccc
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~~~Ge-~E~~Ir~lF~~A~k~~PsILfIDEID~L 1055 (1163)
..+++|+||||||||+||.+|+.++ |..++.+.+.+++...... ....+...+... ..+.+|+|||++.+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccC
Confidence 3689999999999999999998876 7777777776655432110 011122222221 34689999999865
No 264
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.07 E-value=1.5e-05 Score=78.13 Aligned_cols=72 Identities=21% Similarity=0.381 Sum_probs=48.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--------CCcEEEEecccccc--------------ccc--cchHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA--------GANFINISMSSITS--------------KWF--GEGEKYVKAVFSLAS 1040 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL--------g~pfi~Id~seL~s--------------~~~--Ge~E~~Ir~lF~~A~ 1040 (1163)
..++|+||+|+|||++++.+++.+ ..+++.++++.... ... .........+.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 569999999999999999999888 78888888765320 001 122333444555555
Q ss_pred ccCCeEEEEccccccc
Q 001076 1041 KIAPSVVFVDEVDSML 1056 (1163)
Q Consensus 1041 k~~PsILfIDEID~L~ 1056 (1163)
+....+|+|||+|.|.
T Consensus 85 ~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF 100 (131)
T ss_dssp HCTEEEEEEETTHHHH
T ss_pred hcCCeEEEEeChHhcC
Confidence 5555699999999873
No 265
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.06 E-value=1.3e-05 Score=95.80 Aligned_cols=167 Identities=21% Similarity=0.283 Sum_probs=92.0
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc--
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-- 1024 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~~-- 1024 (1163)
.++|.......+.+.+... ......+++.|.+||||+++|+++.... +.+|+.+||..+...+
T Consensus 135 ~lig~s~~~~~v~~~i~~~------------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRL------------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ceeecCHHHHHHHHHHHHH------------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 4667666666666555321 1122479999999999999999998775 5799999998763322
Q ss_pred ---ccchHHHHHHH----HHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeC
Q 001076 1025 ---FGEGEKYVKAV----FSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1097 (1163)
Q Consensus 1025 ---~Ge~E~~Ir~l----F~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN 1097 (1163)
+|......... .........++||||||+.|- ...+..+.+++.+-....-+.......++.||+||+
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~-----~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~ 277 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMP-----LDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATH 277 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCC-----HHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCC
Confidence 22110000000 000112346899999999882 222222222111100000010011124678999987
Q ss_pred CC-------CCCCHHHHhccCcEEEecCCCHHHH----HHHHHHHHhh
Q 001076 1098 RP-------FDLDEAVVRRLPRRLMVNLPDAPNR----EKIIRVILAK 1134 (1163)
Q Consensus 1098 ~p-------~~Ld~aLlrRFd~vI~I~~Pd~eeR----~eILk~ll~k 1134 (1163)
.. ..+.+.+..|+. .+.+.+|...+| ..++++++.+
T Consensus 278 ~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~ 324 (463)
T TIGR01818 278 QNLEALVRQGKFREDLFHRLN-VIRIHLPPLRERREDIPRLARHFLAL 324 (463)
T ss_pred CCHHHHHHcCCcHHHHHHHhC-cceecCCCcccchhhHHHHHHHHHHH
Confidence 53 356677777873 456666665544 4555555543
No 266
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.04 E-value=1.1e-05 Score=100.03 Aligned_cols=191 Identities=25% Similarity=0.282 Sum_probs=109.8
Q ss_pred hhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 001076 927 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 1006 (1163)
Q Consensus 927 ~~e~ek~ll~~iip~~e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~ 1006 (1163)
..+....+.+.++| .|.|.+.+|+.+.-.+. -.-......+.-.+..-+|||.|.||||||.|.+.+++
T Consensus 273 ~~~i~~~l~~SiaP---------sIyG~e~VKkAilLqLf--gGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~ 341 (682)
T COG1241 273 RPDIYDILIKSIAP---------SIYGHEDVKKAILLQLF--GGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAK 341 (682)
T ss_pred CCcHHHHHHHHhcc---------cccCcHHHHHHHHHHhc--CCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHh
Confidence 33444445555555 57899999988854432 11112222222223345799999999999999999999
Q ss_pred HhCCcEEEE-eccc---cccccccchHHHHHHHHHHH---hccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHh
Q 001076 1007 EAGANFINI-SMSS---ITSKWFGEGEKYVKAVFSLA---SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1079 (1163)
Q Consensus 1007 eLg~pfi~I-d~se---L~s~~~Ge~E~~Ir~lF~~A---~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~L 1079 (1163)
.+...++.- ..+. |......... ...+.-+| -...++|++|||+|.| +.....++-..+.+-...+
T Consensus 342 ~aPr~vytsgkgss~~GLTAav~rd~~--tge~~LeaGALVlAD~Gv~cIDEfdKm-----~~~dr~aihEaMEQQtIsI 414 (682)
T COG1241 342 LAPRGVYTSGKGSSAAGLTAAVVRDKV--TGEWVLEAGALVLADGGVCCIDEFDKM-----NEEDRVAIHEAMEQQTISI 414 (682)
T ss_pred hCCceEEEccccccccCceeEEEEccC--CCeEEEeCCEEEEecCCEEEEEeccCC-----ChHHHHHHHHHHHhcEeee
Confidence 886554432 1111 1111000000 00111111 1224689999999977 2222333333333222222
Q ss_pred --cCCcccCCCCEEEEEEeCCCC-------------CCCHHHHhccCcEEEe-cCCCHHHHHHHHHHHHhhC
Q 001076 1080 --DGLRTKDKERVLVLAATNRPF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAKE 1135 (1163)
Q Consensus 1080 --dgl~~k~~~~VlVIaTTN~p~-------------~Ld~aLlrRFd~vI~I-~~Pd~eeR~eILk~ll~k~ 1135 (1163)
-|+..+-+.+.-|+|++|+.. .|++.|++|||.++.+ +.|+.+.-..+.++++...
T Consensus 415 aKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h 486 (682)
T COG1241 415 AKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKH 486 (682)
T ss_pred cccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHH
Confidence 244445567888999999853 6778999999977665 6688776677777766553
No 267
>PRK06921 hypothetical protein; Provisional
Probab=98.03 E-value=1.3e-05 Score=89.92 Aligned_cols=67 Identities=25% Similarity=0.353 Sum_probs=44.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEccccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDS 1054 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL----g~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~ 1054 (1163)
.+++|+|++|+|||+|+.+||+++ +..++.+...+++....... ......+.. -....+|+|||++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence 579999999999999999999886 67778888766543321110 111112122 12457999999953
No 268
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.03 E-value=2.8e-05 Score=86.73 Aligned_cols=70 Identities=24% Similarity=0.421 Sum_probs=49.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccchHH-HHH-HHHHHHhccCCeEEEEcccccc
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEK-YVK-AVFSLASKIAPSVVFVDEVDSM 1055 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~~~Ge~E~-~Ir-~lF~~A~k~~PsILfIDEID~L 1055 (1163)
..+++|+||||+|||+||.||++++ |..++.+..++++...-..-.. ... .+.... ....+|+||||...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 4689999999999999999999998 8999999999887653221110 111 111112 23469999999754
No 269
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.00 E-value=5.8e-05 Score=91.78 Aligned_cols=177 Identities=20% Similarity=0.199 Sum_probs=101.4
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe-cccccc--cccc
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS-MSSITS--KWFG 1026 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id-~seL~s--~~~G 1026 (1163)
.|.|++++|+.|.-.+ +-.....+.+++-.+..-+|||+|.||||||.|.+++++.+..-.+.-- .+.-.+ -++.
T Consensus 430 sIye~edvKkglLLqL--fGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQL--FGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHH--hcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 6789999999885433 2233333444443445567999999999999999999988743332210 000000 0000
Q ss_pred chHHHHHHHHHH---HhccCCeEEEEccccccccCCCCcchHHHHHHHHHH--HHHHhcCCcccCCCCEEEEEEeCCC--
Q 001076 1027 EGEKYVKAVFSL---ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE--FMVNWDGLRTKDKERVLVLAATNRP-- 1099 (1163)
Q Consensus 1027 e~E~~Ir~lF~~---A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~--LL~~Ldgl~~k~~~~VlVIaTTN~p-- 1099 (1163)
... --+++..+ .--...+|..|||+|.|- ......+-.++++ +-...-|+...-+.+.-|||++|+.
T Consensus 508 rd~-dtkqlVLesGALVLSD~GiCCIDEFDKM~-----dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~s 581 (804)
T KOG0478|consen 508 KDP-DTRQLVLESGALVLSDNGICCIDEFDKMS-----DSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRS 581 (804)
T ss_pred ecC-ccceeeeecCcEEEcCCceEEchhhhhhh-----HHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccc
Confidence 000 00000000 011245799999999883 1222222233322 2222345555567788999999952
Q ss_pred -----------CCCCHHHHhccCcEEE-ecCCCHHHHHHHHHHHHhh
Q 001076 1100 -----------FDLDEAVVRRLPRRLM-VNLPDAPNREKIIRVILAK 1134 (1163)
Q Consensus 1100 -----------~~Ld~aLlrRFd~vI~-I~~Pd~eeR~eILk~ll~k 1134 (1163)
-.|++.|++|||.++- ++.|+...-+.+..++..-
T Consensus 582 kynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsL 628 (804)
T KOG0478|consen 582 KYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVAL 628 (804)
T ss_pred cCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHh
Confidence 1577999999997654 4778877556666666544
No 270
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.99 E-value=2.3e-05 Score=97.32 Aligned_cols=48 Identities=31% Similarity=0.475 Sum_probs=40.6
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 1009 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg 1009 (1163)
..|+++.|++++++.|...+.. .+++||+||||+|||++|+++++.+.
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~----------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQ----------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHh----------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 5688999999999988876642 13799999999999999999998774
No 271
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.99 E-value=1e-06 Score=101.60 Aligned_cols=176 Identities=25% Similarity=0.337 Sum_probs=84.0
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc----ccccccc
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS----SITSKWF 1025 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~s----eL~s~~~ 1025 (1163)
.|.|.+.+|..+.-.+..... .....+...+..-+|||.|.||+|||.|.+++++.....++..-.. .|.....
T Consensus 25 ~i~g~~~iK~aill~L~~~~~--~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~ 102 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVE--KNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVS 102 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--S--CCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEEC
T ss_pred cCcCcHHHHHHHHHHHHhccc--cccccccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceec
Confidence 677888887766322211110 0000111123345799999999999999998876664444332111 1211111
Q ss_pred cc---hHHHHH-HHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHh--cCCcccCCCCEEEEEEeCCC
Q 001076 1026 GE---GEKYVK-AVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRP 1099 (1163)
Q Consensus 1026 Ge---~E~~Ir-~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~L--dgl~~k~~~~VlVIaTTN~p 1099 (1163)
.. .+-.+. +.+-.| ..+|++|||+|.+- ......+..++++-...+ .|+..+-+.+.-|+|++|+.
T Consensus 103 ~d~~~~~~~leaGalvla---d~GiccIDe~dk~~-----~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~ 174 (331)
T PF00493_consen 103 RDPVTGEWVLEAGALVLA---DGGICCIDEFDKMK-----EDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPK 174 (331)
T ss_dssp CCGGTSSECEEE-HHHHC---TTSEEEECTTTT-------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--T
T ss_pred cccccceeEEeCCchhcc---cCceeeeccccccc-----chHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhh
Confidence 00 010111 233344 34899999999872 122222222222111111 12222234678999999875
Q ss_pred C-------------CCCHHHHhccCcEEEe-cCCCHHHHHHHHHHHHhhC
Q 001076 1100 F-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAKE 1135 (1163)
Q Consensus 1100 ~-------------~Ld~aLlrRFd~vI~I-~~Pd~eeR~eILk~ll~k~ 1135 (1163)
. .+++.+++|||.++.+ +.|+.+.-..+.++++...
T Consensus 175 ~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 175 FGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp T--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred hhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecc
Confidence 4 4778899999977665 7788777788888777653
No 272
>PRK09183 transposase/IS protein; Provisional
Probab=97.99 E-value=1.8e-05 Score=88.52 Aligned_cols=70 Identities=27% Similarity=0.440 Sum_probs=48.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccccc-chHHHHHHHHHHHhccCCeEEEEcccccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFG-EGEKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~~~G-e~E~~Ir~lF~~A~k~~PsILfIDEID~L 1055 (1163)
.+++|+||+|+|||+||.+|+..+ |..+..+++.++...+.. .....+..+|.... ..+.+|+|||++.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~-~~~dlLiiDdlg~~ 176 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGV-MAPRLLIIDEIGYL 176 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh-cCCCEEEEcccccC
Confidence 579999999999999999998765 778888887776533211 11112334454432 35689999999865
No 273
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.98 E-value=6.1e-05 Score=83.00 Aligned_cols=130 Identities=18% Similarity=0.182 Sum_probs=76.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcch
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1064 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~ 1064 (1163)
.+-.++||.|||||+.++++|+.+|.+++.++|++.++ ...+.++|.-+... .+.+++||+++| +...
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl-----~~~v 100 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRL-----SEEV 100 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCS-----SHHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhh-----hHHH
Confidence 46678999999999999999999999999999988553 34677777766664 589999999988 2222
Q ss_pred HHHHHHHHHHHHHHhcCCc---------ccCCCCEEEEEEeCC----CCCCCHHHHhccCcEEEecCCCHHHHHHH
Q 001076 1065 HEAMRKMKNEFMVNWDGLR---------TKDKERVLVLAATNR----PFDLDEAVVRRLPRRLMVNLPDAPNREKI 1127 (1163)
Q Consensus 1065 ~eal~~il~~LL~~Ldgl~---------~k~~~~VlVIaTTN~----p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eI 1127 (1163)
...+-..+..+...+..-. ..-+..+-+..|.|+ ...|++.++.-| +.+.+..||.....++
T Consensus 101 LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei 175 (231)
T PF12774_consen 101 LSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEI 175 (231)
T ss_dssp HHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHH
Confidence 2222222222222222111 011224455556664 357888887777 7899999997654444
No 274
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=97.97 E-value=1.2e-05 Score=67.19 Aligned_cols=50 Identities=32% Similarity=0.447 Sum_probs=43.2
Q ss_pred eEEccCC-ccceeecCCCCCccceEEEEeecCCcceEEEEEec-CCceEEEcCeec
Q 001076 154 FTVGHNR-QCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVH 207 (1163)
Q Consensus 154 ~t~G~~~-~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~~-~~G~v~vNg~~~ 207 (1163)
++|||.. .||+.++++.+|..||+|..... + ..+|++.+ .+|+ +|||+.+
T Consensus 1 ~~iGr~~~~~~i~~~~~~vs~~H~~i~~~~~-~--~~~i~d~~s~~gt-~vng~~v 52 (52)
T smart00240 1 VTIGRSSEDCDIQLPGPSISRRHAEIVYDGG-G--RFYLIDLGSTNGT-FVNGKRI 52 (52)
T ss_pred CEeCCCCCCCCEEeCCCCcchhHcEEEECCC-C--eEEEEECCCCCCe-eECCEEC
Confidence 5899999 99999999999999999987533 3 47899999 7788 7999875
No 275
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.97 E-value=1.4e-05 Score=99.65 Aligned_cols=84 Identities=19% Similarity=0.242 Sum_probs=71.5
Q ss_pred CCCceee---ecceeEEccCCccce-----eecCCCCCccceEEEEeecCCcceEEEEEecC-CceEEEcCee-----cC
Q 001076 143 QNSHLSM---TGAVFTVGHNRQCDL-----YLKDPSISKNLCRLRRIENGGPSGALLEITGG-KGEVEVNGNV-----HP 208 (1163)
Q Consensus 143 ~~p~~~i---~~~~~t~G~~~~cd~-----~l~d~~~s~~~c~l~~~~~~g~~~a~le~~~~-~G~v~vNg~~-----~~ 208 (1163)
+...++| -+--|.|||..+||+ .++|+.+|..|.+|... ++. .||||.+| ||| +|||+. +.
T Consensus 545 ~~~~~~l~~~~~~p~~iG~~~~~~~~~~~i~i~~~~vS~~Ha~i~~~--~~~--~~~~Dl~S~nGT-~v~~~~~~r~~~~ 619 (668)
T PLN02927 545 VSETLCLTKDEDQPCIVGSEPDQDFPGMRIVIPSSQVSKMHARVIYK--DGA--FFLMDLRSEHGT-YVTDNEGRRYRAT 619 (668)
T ss_pred ccceeeeecCCCCCeEecCCCCcCCCCceEEecCCccChhHeEEEEE--CCE--EEEEECCCCCcc-EEeCCCCceEecC
Confidence 3456888 567899999999997 99999999999999976 333 89999887 899 699888 45
Q ss_pred CCceEEeeCCCEEEEccCCCeeE
Q 001076 209 KDSQVVLRGGDELVFSPSGKHSY 231 (1163)
Q Consensus 209 k~~~~~L~~gDev~f~~~~~~ay 231 (1163)
-|..+.|++||+|.|+..++.+|
T Consensus 620 p~~~~~l~~~d~I~~g~~~~~~f 642 (668)
T PLN02927 620 PNFPARFRSSDIIEFGSDKKAAF 642 (668)
T ss_pred CCCceEeCCCCEEEeCCCcceeE
Confidence 67799999999999999887655
No 276
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.96 E-value=0.00017 Score=81.87 Aligned_cols=121 Identities=13% Similarity=0.100 Sum_probs=79.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEE--------EEecccccccc-cc----chHHHHHHHHHHHhcc----CC
Q 001076 982 KPCKGILLFGPPGTGKTMLAKAVATEAGANFI--------NISMSSITSKW-FG----EGEKYVKAVFSLASKI----AP 1044 (1163)
Q Consensus 982 ~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi--------~Id~seL~s~~-~G----e~E~~Ir~lF~~A~k~----~P 1044 (1163)
+-+..+||+||.|+||+.+|.++|+.+-+.-. .-..+++.--. .+ -.-..++.+...+... ..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 34567999999999999999999998844210 00112211000 01 1133455555555433 34
Q ss_pred eEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCC
Q 001076 1045 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLP 1119 (1163)
Q Consensus 1045 sILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~P 1119 (1163)
-|++||++|.|- ....|.|+..++. ++.++++|..|+.++.|.+.+++|+ ..+.|+.+
T Consensus 97 kv~ii~~ad~mt------------~~AaNaLLK~LEE----Pp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 97 KIYIIHEADRMT------------LDAISAFLKVLED----PPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred eEEEEechhhcC------------HHHHHHHHHHhhc----CCCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 699999999883 2344566666654 3467899999999999999999998 56667654
No 277
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.94 E-value=3.4e-05 Score=91.52 Aligned_cols=141 Identities=20% Similarity=0.341 Sum_probs=81.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc-----ccchHHHH-------HHHHHHHhccCCeEEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEKYV-------KAVFSLASKIAPSVVFV 1049 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~~-----~Ge~E~~I-------r~lF~~A~k~~PsILfI 1049 (1163)
..++++|.+||||+++|+++.... +.+|+.++|..+...+ +|...... ...| .....++|||
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~---~~a~~gtl~l 239 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRF---VEADGGTLFL 239 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCce---eECCCCEEEE
Confidence 579999999999999999997665 5799999998754222 22110000 0011 2234689999
Q ss_pred ccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCC-------CCCCHHHHhccCcEEEecCCCHH
Q 001076 1050 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 1122 (1163)
Q Consensus 1050 DEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~I~~Pd~e 1122 (1163)
||||.|- ...+..+..++.+-.....+.......++.+|+||+.. ..+...|..|+ ..+.+.+|...
T Consensus 240 dei~~l~-----~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l-~~~~i~~ppLr 313 (441)
T PRK10365 240 DEIGDIS-----PMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL-NVVAIEVPSLR 313 (441)
T ss_pred eccccCC-----HHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChh
Confidence 9999882 22222221111111000111111112367888888653 34556666676 35778888877
Q ss_pred HHH----HHHHHHHhh
Q 001076 1123 NRE----KIIRVILAK 1134 (1163)
Q Consensus 1123 eR~----eILk~ll~k 1134 (1163)
+|. .++++++.+
T Consensus 314 eR~~Di~~l~~~~l~~ 329 (441)
T PRK10365 314 QRREDIPLLAGHFLQR 329 (441)
T ss_pred hcchhHHHHHHHHHHH
Confidence 664 355555543
No 278
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.94 E-value=1.3e-05 Score=91.26 Aligned_cols=160 Identities=26% Similarity=0.327 Sum_probs=100.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~ 1021 (1163)
...|+.|++....++.+.+.... +. .-...+||+|.+||||-.||++.-... ..||+.++|+.+-
T Consensus 200 ~~~F~~~v~~S~~mk~~v~qA~k-------~A-----mlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 200 VSGFEQIVAVSPKMKHVVEQAQK-------LA-----MLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred ccchHHHhhccHHHHHHHHHHHH-------hh-----ccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 34677888887777766554321 11 112469999999999999999986655 7899999997653
Q ss_pred -----cccccchH--HHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEE
Q 001076 1022 -----SKWFGEGE--KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1094 (1163)
Q Consensus 1022 -----s~~~Ge~E--~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIa 1094 (1163)
+..||..+ +--..+|+.|.. +.+|+|||..| ++..+..+.++++.-...--|....-..+|.||+
T Consensus 268 e~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEm-----Sp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIc 339 (511)
T COG3283 268 EDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEM-----SPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVIC 339 (511)
T ss_pred hhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhc-----CHHHHHHHHHHhcCCceeecCCcceEEEEEEEEe
Confidence 33444333 233467887765 78999999877 2333333322222111000011111134799999
Q ss_pred EeCCC-------CCCCHHHHhccCcEEEecCCCHHHHH
Q 001076 1095 ATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE 1125 (1163)
Q Consensus 1095 TTN~p-------~~Ld~aLlrRFd~vI~I~~Pd~eeR~ 1125 (1163)
||..+ ..+.+.+.-|+ .++.+..|...+|.
T Consensus 340 atq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~ 376 (511)
T COG3283 340 ATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERP 376 (511)
T ss_pred cccccHHHHHhcCchHHHHHHHh-heeeecCCccccCc
Confidence 99653 34555666687 68889999877764
No 279
>PF05729 NACHT: NACHT domain
Probab=97.93 E-value=8.4e-05 Score=75.15 Aligned_cols=140 Identities=15% Similarity=0.254 Sum_probs=75.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC--------CcE-EEEecccccccc------------ccchHHHHHH-HHHHHhccC
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAG--------ANF-INISMSSITSKW------------FGEGEKYVKA-VFSLASKIA 1043 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg--------~pf-i~Id~seL~s~~------------~Ge~E~~Ir~-lF~~A~k~~ 1043 (1163)
-++|+|+||+|||++++.++..+. ..+ +.+.+.++.... .......+.. +...+.+..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999987771 122 233433322110 0011111111 222334556
Q ss_pred CeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccC--cEEEecCCCH
Q 001076 1044 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP--RRLMVNLPDA 1121 (1163)
Q Consensus 1044 PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd--~vI~I~~Pd~ 1121 (1163)
..+|+||.+|.+...... .........+..++ ... ...++.+|.|++. ..... +.+++. ..+.+...+.
T Consensus 82 ~~llilDglDE~~~~~~~-~~~~~~~~~l~~l~---~~~---~~~~~~liit~r~-~~~~~-~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-QERQRLLDLLSQLL---PQA---LPPGVKLIITSRP-RAFPD-LRRRLKQAQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh-hHHHHHHHHHHHHh---hhc---cCCCCeEEEEEcC-ChHHH-HHHhcCCCcEEEECCCCH
Confidence 789999999998532211 01111222233333 220 1133455555543 22221 333322 4688999999
Q ss_pred HHHHHHHHHHHhh
Q 001076 1122 PNREKIIRVILAK 1134 (1163)
Q Consensus 1122 eeR~eILk~ll~k 1134 (1163)
+++.++++.+++.
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999998754
No 280
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.91 E-value=6e-05 Score=75.55 Aligned_cols=71 Identities=23% Similarity=0.426 Sum_probs=48.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc----------------------ccc--chHHHHHHHHHHH
Q 001076 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----------------------WFG--EGEKYVKAVFSLA 1039 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~----------------------~~G--e~E~~Ir~lF~~A 1039 (1163)
++|+||||+|||+++..++..+ +.+++.++....... +.. ..+......+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998887 567777765432210 000 1111122344566
Q ss_pred hccCCeEEEEcccccccc
Q 001076 1040 SKIAPSVVFVDEVDSMLG 1057 (1163)
Q Consensus 1040 ~k~~PsILfIDEID~L~g 1057 (1163)
....+.+|+|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 677889999999998863
No 281
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.91 E-value=0.00011 Score=81.76 Aligned_cols=150 Identities=15% Similarity=0.061 Sum_probs=81.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH--hC--CcE-EEEecccc----------ccc---c------ccchHHHHHHHHHH
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATE--AG--ANF-INISMSSI----------TSK---W------FGEGEKYVKAVFSL 1038 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~e--Lg--~pf-i~Id~seL----------~s~---~------~Ge~E~~Ir~lF~~ 1038 (1163)
...-|.|+|++|+|||+||..+++. .. +.. +.++...- ... . ....+.....+. .
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~ 96 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLR-E 96 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHH-H
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccch-h
Confidence 3467999999999999999999988 42 322 23333221 000 0 111233333343 3
Q ss_pred HhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecC
Q 001076 1039 ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 1118 (1163)
Q Consensus 1039 A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~ 1118 (1163)
.-+..+.+|+||+++... .+..+...+.. ...+..||.||...... ..+... ...+.+..
T Consensus 97 ~L~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~----~~~~~kilvTTR~~~v~-~~~~~~-~~~~~l~~ 156 (287)
T PF00931_consen 97 LLKDKRCLLVLDDVWDEE--------------DLEELREPLPS----FSSGSKILVTTRDRSVA-GSLGGT-DKVIELEP 156 (287)
T ss_dssp HHCCTSEEEEEEEE-SHH--------------HH-------HC----HHSS-EEEEEESCGGGG-TTHHSC-EEEEECSS
T ss_pred hhccccceeeeeeecccc--------------ccccccccccc----ccccccccccccccccc-cccccc-cccccccc
Confidence 334458999999997441 12222222211 11346677788664322 111111 36799999
Q ss_pred CCHHHHHHHHHHHHhhCC----CCChhhHHHHHHHcCCC
Q 001076 1119 PDAPNREKIIRVILAKEE----LASDVDLEGIANMADGY 1153 (1163)
Q Consensus 1119 Pd~eeR~eILk~ll~k~~----l~~dvdl~~LA~~TeGy 1153 (1163)
.+.++-.++|........ -..+.....|++.+.|+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 195 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL 195 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-
T ss_pred ccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999875533 11233467888888764
No 282
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.86 E-value=3.7e-05 Score=86.61 Aligned_cols=139 Identities=21% Similarity=0.347 Sum_probs=78.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-Cc--EEEEeccccccccccchHHHHHHHHHHH-----------hccCCeEEEEc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG-AN--FINISMSSITSKWFGEGEKYVKAVFSLA-----------SKIAPSVVFVD 1050 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg-~p--fi~Id~seL~s~~~Ge~E~~Ir~lF~~A-----------~k~~PsILfID 1050 (1163)
+++||+||+|||||++++.+...+. .. ...++++... +...+..+.+.. ...+..|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 6899999999999999999887663 22 2344443311 111222211110 01134699999
Q ss_pred cccccccCCCCcchHHHHHHHHHHHHHHhcCCccc------CCCCEEEEEEeCCC---CCCCHHHHhccCcEEEecCCCH
Q 001076 1051 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------DKERVLVLAATNRP---FDLDEAVVRRLPRRLMVNLPDA 1121 (1163)
Q Consensus 1051 EID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k------~~~~VlVIaTTN~p---~~Ld~aLlrRFd~vI~I~~Pd~ 1121 (1163)
|+..- ....-+.+.. ..++.+++.. .|+... .=.++.+||++++. ..+++.|+|.| .++.++.|+.
T Consensus 108 DlN~p--~~d~ygtq~~-iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~~~p~~ 182 (272)
T PF12775_consen 108 DLNMP--QPDKYGTQPP-IELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNIPYPSD 182 (272)
T ss_dssp TTT-S-----TTS--HH-HHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE----TC
T ss_pred ccCCC--CCCCCCCcCH-HHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEecCCCh
Confidence 99843 2222222222 2333333322 122221 11578899998864 35788999999 7999999999
Q ss_pred HHHHHHHHHHHhh
Q 001076 1122 PNREKIIRVILAK 1134 (1163)
Q Consensus 1122 eeR~eILk~ll~k 1134 (1163)
+.-..|+..++..
T Consensus 183 ~sl~~If~~il~~ 195 (272)
T PF12775_consen 183 ESLNTIFSSILQS 195 (272)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999998888864
No 283
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.84 E-value=1.3e-05 Score=98.89 Aligned_cols=131 Identities=15% Similarity=0.159 Sum_probs=89.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccccccccccch--HHHHH--------HHHHHHhccCCeEEEEccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEG--EKYVK--------AVFSLASKIAPSVVFVDEV 1052 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg--~pfi~Id~seL~s~~~Ge~--E~~Ir--------~lF~~A~k~~PsILfIDEI 1052 (1163)
.||||.|++|+||++++++++..+. .||+.+....-....+|.. +..++ .++..| ..+||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~A---h~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEA---DGGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeec---cCCEEEecCc
Confidence 5899999999999999999999984 5898877655444555533 22221 122222 2379999999
Q ss_pred cccccCCCCcchHHHHHHHHHHHHHHh--cCCcccCCCCEEEEEEeCCC---CCCCHHHHhccCcEEEecCCCHHH
Q 001076 1053 DSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRP---FDLDEAVVRRLPRRLMVNLPDAPN 1123 (1163)
Q Consensus 1053 D~L~g~r~s~~~~eal~~il~~LL~~L--dgl~~k~~~~VlVIaTTN~p---~~Ld~aLlrRFd~vI~I~~Pd~ee 1123 (1163)
..+ .+...+.+...+.+-.+.+ ++...+-+.+++||+|-|.. +.|.+.++.||+..+.+..|...+
T Consensus 103 n~~-----~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~ 173 (584)
T PRK13406 103 ERL-----EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRD 173 (584)
T ss_pred ccC-----CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHH
Confidence 866 3344444444444444444 55555566889999984432 458899999999999998877543
No 284
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=2.8e-05 Score=87.80 Aligned_cols=75 Identities=29% Similarity=0.324 Sum_probs=58.5
Q ss_pred cccCCccccccccccccccchhHHHHHHHhhhhhhcccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCe
Q 001076 442 GILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 521 (1163)
Q Consensus 442 ~i~~~~~~~vsf~~FPYylse~Tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgpagsE~Yqe~LaKALA~~f~a~ 521 (1163)
-++|+.+..==||+- |-.-+-|+-|++-|.+-|+-.++ +-..+|=+-+|=|||.||||| -...|.||||+++.+|
T Consensus 130 w~LPa~eF~glWEsL--iyds~lK~~ll~Ya~s~l~fsek-~vntnlIt~NRliLlhGPPGT--GKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 130 WYLPAAEFDGLWESL--IYDSNLKERLLSYAASALLFSEK-KVNTNLITWNRLILLHGPPGT--GKTSLCKALAQKLSIR 204 (423)
T ss_pred eeccchhhhhhHHHH--hhcccHHHHHHHHHHHHHHHHhc-CCCCceeeeeeEEEEeCCCCC--ChhHHHHHHHHhheee
Confidence 356666666678874 33456677777777777776655 566899999999999999994 7889999999999888
No 285
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=0.0012 Score=75.61 Aligned_cols=142 Identities=10% Similarity=0.011 Sum_probs=91.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC-------------cEEEEeccccccccccchHHHHHHHHHHHhc-----cCCe
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEAGA-------------NFINISMSSITSKWFGEGEKYVKAVFSLASK-----IAPS 1045 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eLg~-------------pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k-----~~Ps 1045 (1163)
.+..||+|+.|.||+.+|.++++.+-+ .++.++.. +..+ .-..++.+...... ...-
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~i--~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKDL--SKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCcC--CHHHHHHHHHHhccCCcccCCce
Confidence 356899999999999999999998722 22333310 1111 11234444443322 2457
Q ss_pred EEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHH
Q 001076 1046 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNRE 1125 (1163)
Q Consensus 1046 ILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~ 1125 (1163)
|++||++|.+. ....+.|+..++.. +..+++|.+|+.+..+-+++++|+ .++.+.+|+.++..
T Consensus 93 vvII~~~e~m~------------~~a~NaLLK~LEEP----p~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l~ 155 (299)
T PRK07132 93 ILIIKNIEKTS------------NSLLNALLKTIEEP----PKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKIL 155 (299)
T ss_pred EEEEecccccC------------HHHHHHHHHHhhCC----CCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHHH
Confidence 99999999772 22345566666553 356777777778899999999998 68999999888776
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHcCC
Q 001076 1126 KIIRVILAKEELASDVDLEGIANMADG 1152 (1163)
Q Consensus 1126 eILk~ll~k~~l~~dvdl~~LA~~TeG 1152 (1163)
+.+... ++ ++.....+|..+.|
T Consensus 156 ~~l~~~----~~-~~~~a~~~a~~~~~ 177 (299)
T PRK07132 156 AKLLSK----NK-EKEYNWFYAYIFSN 177 (299)
T ss_pred HHHHHc----CC-ChhHHHHHHHHcCC
Confidence 665432 22 33334455666655
No 286
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=7.9e-05 Score=86.05 Aligned_cols=181 Identities=13% Similarity=0.137 Sum_probs=109.9
Q ss_pred eeeecCCCCCCCCCCC----CCCCCCCcccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcCC
Q 001076 645 GVRFDRSIPEGNNLGG----FCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN 720 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~~----~c~~~~~ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~~ 720 (1163)
-|.|.+|+++|+++.+ .-|--+--.|.-|+.. -.--+.--.|..||+-... -+.-+||||||.|.+|+.+
T Consensus 386 NilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA----PlG~qaVTkiH~lFDWakk--S~rGLllFIDEADAFLceR 459 (630)
T KOG0742|consen 386 NILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA----PLGAQAVTKIHKLFDWAKK--SRRGLLLFIDEADAFLCER 459 (630)
T ss_pred heeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc----ccchHHHHHHHHHHHHHhh--cccceEEEehhhHHHHHHh
Confidence 3789999999999872 1111110122333322 1111222335555555422 1678999999999999953
Q ss_pred --hhhHHHHHHHHhcC-------CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCccccccccccch
Q 001076 721 --NDAYGALKSKLENL-------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETP 791 (1163)
Q Consensus 721 --~~~~~~i~s~L~~L-------~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~~ 791 (1163)
.-+.....+.|.+| +..+++.-++|++ .+||
T Consensus 460 nktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrp------------------------------gdlD---------- 499 (630)
T KOG0742|consen 460 NKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRP------------------------------GDLD---------- 499 (630)
T ss_pred chhhhcHHHHHHHHHHHHHhcccccceEEEeccCCc------------------------------cchh----------
Confidence 44556678888888 4488888999954 3344
Q ss_pred HHHHHhhhccccceeecCCchhHHHHHHH--HHHHHhhhhhhccc----hhhHHH-hhhhcCC-CCcccccchhhcccCC
Q 001076 792 KALKQISRLFPNKVTIQLPQDEALLSDWK--QQLERDVETLKGQS----NIISIR-SVLSRNG-LDCVDLESLCIKDQTL 863 (1163)
Q Consensus 792 ~~~~~l~~lf~~~i~i~~P~DeALlRRfe--rq~e~~LpdlkgR~----~Il~IH-T~l~~~~-L~~vdLeeLa~~tkg~ 863 (1163)
-+++-+|-..|++++|..|..-|-.. -.-|+..|+.++.. ++++-. .++.-.+ +.+.-+.+.|.+|.||
T Consensus 500 ---sAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGf 576 (630)
T KOG0742|consen 500 ---SAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGF 576 (630)
T ss_pred ---HHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCC
Confidence 35777888899999999888655222 22334445555531 111100 0011111 2345677899999999
Q ss_pred chhhhhhHHhH
Q 001076 864 TTEGVEKIVGW 874 (1163)
Q Consensus 864 sgadIe~Lv~~ 874 (1163)
+|-+|..|+-.
T Consensus 577 SGREiakLva~ 587 (630)
T KOG0742|consen 577 SGREIAKLVAS 587 (630)
T ss_pred cHHHHHHHHHH
Confidence 99999998743
No 287
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.72 E-value=3.8e-05 Score=85.34 Aligned_cols=132 Identities=24% Similarity=0.371 Sum_probs=80.4
Q ss_pred ceEEEEcCCCChHHHHHHHHH------HHhCCcEEEEeccccccc-----cccchHHHHHHHHHHHhc--------cCCe
Q 001076 985 KGILLFGPPGTGKTMLAKAVA------TEAGANFINISMSSITSK-----WFGEGEKYVKAVFSLASK--------IAPS 1045 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA------~eLg~pfi~Id~seL~s~-----~~Ge~E~~Ir~lF~~A~k--------~~Ps 1045 (1163)
..+||.||+|.||+.||+.|- +.+.-+|+.++|..+.++ .+| .++..|..|+. ...+
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfg----hvkgaftga~~~r~gllrsadgg 284 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFG----HVKGAFTGARESREGLLRSADGG 284 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHh----hhccccccchhhhhhhhccCCCc
Confidence 369999999999999999884 445789999999987643 233 45555554432 3467
Q ss_pred EEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCC-------CCCCCHHHHhccCcEEEecC
Q 001076 1046 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-------PFDLDEAVVRRLPRRLMVNL 1118 (1163)
Q Consensus 1046 ILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~-------p~~Ld~aLlrRFd~vI~I~~ 1118 (1163)
+||+|||..|. ..++..+.+.+.+-...--|....-...+-+|+-|-+ ...+.+.+.-|+ ..+.|.+
T Consensus 285 mlfldeigelg-----adeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~ari-nlwtf~l 358 (531)
T COG4650 285 MLFLDEIGELG-----ADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARI-NLWTFTL 358 (531)
T ss_pred eEehHhhhhcC-----ccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhh-heeeeec
Confidence 99999999873 2233333333333221111111111245566666532 223445555566 4677888
Q ss_pred CCHHHHHH
Q 001076 1119 PDAPNREK 1126 (1163)
Q Consensus 1119 Pd~eeR~e 1126 (1163)
|...+|.+
T Consensus 359 pgl~qr~e 366 (531)
T COG4650 359 PGLRQRQE 366 (531)
T ss_pred cccccCcc
Confidence 87776654
No 288
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.70 E-value=0.0005 Score=77.52 Aligned_cols=185 Identities=18% Similarity=0.234 Sum_probs=111.0
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---C--CcEEE-----Eeccc
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---G--ANFIN-----ISMSS 1019 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g--~pfi~-----Id~se 1019 (1163)
.+.|+.-+++.+...+...+.++ . .+.|--+=|+|++||||.++++.||+.+ | -+++. .+++.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~------~-p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~ 155 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANP------N-PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPH 155 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCC------C-CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCC
Confidence 35688888888888876544322 1 2223446789999999999999999887 2 23322 22222
Q ss_pred --cccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeC
Q 001076 1020 --ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1097 (1163)
Q Consensus 1020 --L~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN 1097 (1163)
-...| .++.-.++-..+...+.+|.++||+|.|- ..+-..+.-|+.........+..+-++|.-+|
T Consensus 156 ~~~ie~Y---k~eL~~~v~~~v~~C~rslFIFDE~DKmp---------~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN 223 (344)
T KOG2170|consen 156 ASKIEDY---KEELKNRVRGTVQACQRSLFIFDEVDKLP---------PGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSN 223 (344)
T ss_pred hHHHHHH---HHHHHHHHHHHHHhcCCceEEechhhhcC---------HhHHHHHhhhhccccccccccccceEEEEEcC
Confidence 11111 12233345555666777999999999882 22233334444433333323446677777776
Q ss_pred CC-----------------------CCCCHHHHh-------------------ccCcEEEecCCCHHHHHHHHHHHHhhC
Q 001076 1098 RP-----------------------FDLDEAVVR-------------------RLPRRLMVNLPDAPNREKIIRVILAKE 1135 (1163)
Q Consensus 1098 ~p-----------------------~~Ld~aLlr-------------------RFd~vI~I~~Pd~eeR~eILk~ll~k~ 1135 (1163)
.- ..+.+++.. ++|..|.|-+.+...-..-++..+.+.
T Consensus 224 ~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~el~~r 303 (344)
T KOG2170|consen 224 AGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAELRKR 303 (344)
T ss_pred CcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHHHHHhc
Confidence 41 112222211 345557777777888888899988888
Q ss_pred CCCChhh-HHHHHHHcCCC
Q 001076 1136 ELASDVD-LEGIANMADGY 1153 (1163)
Q Consensus 1136 ~l~~dvd-l~~LA~~TeGy 1153 (1163)
++..|.+ ++++|+...=|
T Consensus 304 g~~~d~~~~erva~~l~ff 322 (344)
T KOG2170|consen 304 GLAPDQDFVERVANSLSFF 322 (344)
T ss_pred ccccchHHHHHHHHhhccc
Confidence 8776655 67788776533
No 289
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=97.70 E-value=0.00015 Score=76.41 Aligned_cols=75 Identities=29% Similarity=0.436 Sum_probs=63.6
Q ss_pred eeeecceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEec-CCceEEEcCeecCCCceEEeeCCCEEEEcc
Q 001076 147 LSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVHPKDSQVVLRGGDELVFSP 225 (1163)
Q Consensus 147 ~~i~~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~~-~~G~v~vNg~~~~k~~~~~L~~gDev~f~~ 225 (1163)
..+....+|+||+..+|+.|+|+.+|..||.|+..+.. .+||+.+ +||| +|||.++.. .+.|+.||.|.|+.
T Consensus 84 ~~~~~~~~tigr~~~~~i~~~~~~vSR~Ha~l~~~~~~----~~~~d~~S~nGt-~vn~~~v~~--~~~l~~gd~i~i~~ 156 (191)
T COG1716 84 IVLGEPVTTIGRDPDNDIVLDDDVVSRRHAELRREGNE----VFLEDLGSTNGT-YVNGEKVRQ--RVLLQDGDVIRLGG 156 (191)
T ss_pred cccccceEEeccCCCCCEEcCCCccccceEEEEEeCCc----eEEEECCCCcce-EECCeEccC--cEEcCCCCEEEECc
Confidence 34445689999999999999999999999999987544 6667766 5688 799999998 89999999999987
Q ss_pred CCC
Q 001076 226 SGK 228 (1163)
Q Consensus 226 ~~~ 228 (1163)
...
T Consensus 157 ~~~ 159 (191)
T COG1716 157 TLA 159 (191)
T ss_pred cce
Confidence 765
No 290
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.66 E-value=0.00025 Score=91.70 Aligned_cols=136 Identities=26% Similarity=0.298 Sum_probs=92.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc------cc-ccccc--hHHH-HHHHHHHHhccCCeEEEEccccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI------TS-KWFGE--GEKY-VKAVFSLASKIAPSVVFVDEVDS 1054 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL------~s-~~~Ge--~E~~-Ir~lF~~A~k~~PsILfIDEID~ 1054 (1163)
+++||.|.||+|||.|..|+|+..|-.+++|+.++- ++ ...++ .+-. ...-|-.|.+. ..-|++||+.-
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~-G~WVlLDEiNL 1622 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD-GGWVLLDEINL 1622 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc-CCEEEeehhhh
Confidence 579999999999999999999999999999998872 22 12222 1111 22345555553 46889999972
Q ss_pred cccCCCCcchHHHHHHHHHHHHHHhc--------CC--cccCCCCEEEEEEeCCC------CCCCHHHHhccCcEEEecC
Q 001076 1055 MLGRRENPGEHEAMRKMKNEFMVNWD--------GL--RTKDKERVLVLAATNRP------FDLDEAVVRRLPRRLMVNL 1118 (1163)
Q Consensus 1055 L~g~r~s~~~~eal~~il~~LL~~Ld--------gl--~~k~~~~VlVIaTTN~p------~~Ld~aLlrRFd~vI~I~~ 1118 (1163)
- + ..++.-|-..+| .+ .-+-+.+++|.||-|+. .-|+..|+.|| .++.+..
T Consensus 1623 a-----S-------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV~~d~ 1689 (4600)
T COG5271 1623 A-----S-------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVVKMDG 1689 (4600)
T ss_pred h-----H-------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heEEecc
Confidence 2 1 122222222222 11 11234678999988874 47999999999 5788888
Q ss_pred CCHHHHHHHHHHHHhh
Q 001076 1119 PDAPNREKIIRVILAK 1134 (1163)
Q Consensus 1119 Pd~eeR~eILk~ll~k 1134 (1163)
.+.++...|..+++..
T Consensus 1690 lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1690 LTTDDITHIANKMYPQ 1705 (4600)
T ss_pred cccchHHHHHHhhCCc
Confidence 8888888888777654
No 291
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.62 E-value=6.1e-05 Score=88.78 Aligned_cols=185 Identities=25% Similarity=0.334 Sum_probs=112.2
Q ss_pred hhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 001076 927 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 1006 (1163)
Q Consensus 927 ~~e~ek~ll~~iip~~e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~ 1006 (1163)
..++.+.+...+.| +|.|.+++|+.|.-++.-...+ ....+---+..-+|+|.|.||+.|+-|.++|.+
T Consensus 329 ~~d~yekLa~SiAP---------EIyGheDVKKaLLLlLVGgvd~--~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~r 397 (721)
T KOG0482|consen 329 EGDFYEKLAASIAP---------EIYGHEDVKKALLLLLVGGVDK--SPGDGMKIRGDINICLMGDPGVAKSQLLKYISR 397 (721)
T ss_pred cccHHHHHHHhhch---------hhccchHHHHHHHHHhhCCCCC--CCCCCceeecceeEEecCCCchhHHHHHHHHHh
Confidence 34455555555555 7889999999987655321111 000111122335699999999999999999998
Q ss_pred HhCCcEEEEeccccccccccchHHHHHH-----------HHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHH
Q 001076 1007 EAGANFINISMSSITSKWFGEGEKYVKA-----------VFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 1075 (1163)
Q Consensus 1007 eLg~pfi~Id~seL~s~~~Ge~E~~Ir~-----------lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~L 1075 (1163)
-....++.---.. .-+|-+...++. ..-.| ..+|..|||+|.|... ...+.-.++.+-
T Consensus 398 lapRgvYTTGrGS---SGVGLTAAVmkDpvTgEM~LEGGALVLA---D~GICCIDEfDKM~e~-----DRtAIHEVMEQQ 466 (721)
T KOG0482|consen 398 LAPRGVYTTGRGS---SGVGLTAAVMKDPVTGEMVLEGGALVLA---DGGICCIDEFDKMDES-----DRTAIHEVMEQQ 466 (721)
T ss_pred cCcccceecCCCC---CccccchhhhcCCCCCeeEeccceEEEc---cCceEeehhhhhhhhh-----hhHHHHHHHHhh
Confidence 7755554432111 011111111111 11111 3479999999998422 222333343333
Q ss_pred HHH--hcCCcccCCCCEEEEEEeCCCC-------------CCCHHHHhccCcEEEe-cCCCHHHHHHHHHHHHh
Q 001076 1076 MVN--WDGLRTKDKERVLVLAATNRPF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILA 1133 (1163)
Q Consensus 1076 L~~--Ldgl~~k~~~~VlVIaTTN~p~-------------~Ld~aLlrRFd~vI~I-~~Pd~eeR~eILk~ll~ 1133 (1163)
... --|+.++-+.+.-|+|++|+.+ .|+.++++|||..+.+ +.|+.+.-..+.+++..
T Consensus 467 TISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTy 540 (721)
T KOG0482|consen 467 TISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITY 540 (721)
T ss_pred hhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHh
Confidence 322 3466666778899999998732 6889999999976555 78998888888887653
No 292
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.62 E-value=0.0019 Score=73.60 Aligned_cols=127 Identities=12% Similarity=0.111 Sum_probs=79.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEE-------EE---------ecccccccc-ccc--hHHHHHHHHHHHhcc
Q 001076 982 KPCKGILLFGPPGTGKTMLAKAVATEAGANFI-------NI---------SMSSITSKW-FGE--GEKYVKAVFSLASKI 1042 (1163)
Q Consensus 982 ~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi-------~I---------d~seL~s~~-~Ge--~E~~Ir~lF~~A~k~ 1042 (1163)
+.+..+||+|| +||+.+|.++|+.+-+.-. .+ +.+++.--. .|. .-..|+.+...+...
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 34568999996 6899999999988733210 00 112221000 011 123566655544432
Q ss_pred ----CCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecC
Q 001076 1043 ----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 1118 (1163)
Q Consensus 1043 ----~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~ 1118 (1163)
...|++||++|.|- ....|.|+..++. ++.++++|.+|+.++.+.+.+++|+ .+|.|+.
T Consensus 100 p~~~~~kV~II~~ad~m~------------~~AaNaLLKtLEE----Pp~~t~~iL~t~~~~~lLpTI~SRc-q~i~f~~ 162 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH------------VNAANSLLKVIEE----PQSEIYIFLLTNDENKVLPTIKSRT-QIFHFPK 162 (290)
T ss_pred cccCCcEEEEeehhhhcC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhCchHHHHcc-eeeeCCC
Confidence 34699999999882 2344666666655 3456889999999999999999999 6777855
Q ss_pred CCHHHHHHHH
Q 001076 1119 PDAPNREKII 1128 (1163)
Q Consensus 1119 Pd~eeR~eIL 1128 (1163)
+.++..+++
T Consensus 163 -~~~~~~~~L 171 (290)
T PRK07276 163 -NEAYLIQLL 171 (290)
T ss_pred -cHHHHHHHH
Confidence 444433333
No 293
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.61 E-value=0.0013 Score=87.65 Aligned_cols=173 Identities=16% Similarity=0.220 Sum_probs=97.1
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE---EEEecccc--
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF---INISMSSI-- 1020 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pf---i~Id~seL-- 1020 (1163)
..+++++|.+..++++...+... ....+-|-|+|++|+|||+||+++++.+...| +.++...+
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~------------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLE------------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cccccccchHHHHHHHHHHHccc------------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 35778999999999998876421 11235689999999999999999988874333 11221000
Q ss_pred -ccccc-------c----chHHHHHH-------------HHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHH
Q 001076 1021 -TSKWF-------G----EGEKYVKA-------------VFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 1075 (1163)
Q Consensus 1021 -~s~~~-------G----e~E~~Ir~-------------lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~L 1075 (1163)
...+. . -....+.. .....-+.++.+|+||+++.. ..+..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--------------~~l~~L 314 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--------------DVLDAL 314 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--------------HHHHHH
Confidence 00000 0 00001111 112222346789999999732 122222
Q ss_pred HHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhh----HHHHHHH
Q 001076 1076 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVD----LEGIANM 1149 (1163)
Q Consensus 1076 L~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvd----l~~LA~~ 1149 (1163)
....+.. ...-.||.||... .+.+ ..+.++.+..|+.++..++|..+.-+....+ .+ ..++++.
T Consensus 315 ~~~~~~~----~~GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~l~~~iv~~ 384 (1153)
T PLN03210 315 AGQTQWF----GSGSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP-DGFMELASEVALR 384 (1153)
T ss_pred HhhCccC----CCCcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHH
Confidence 2222211 1234566677653 3332 3567899999999999999988764433222 22 3445666
Q ss_pred cCCCC
Q 001076 1150 ADGYS 1154 (1163)
Q Consensus 1150 TeGyS 1154 (1163)
+.|.-
T Consensus 385 c~GLP 389 (1153)
T PLN03210 385 AGNLP 389 (1153)
T ss_pred hCCCc
Confidence 66643
No 294
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.59 E-value=0.0025 Score=76.67 Aligned_cols=196 Identities=16% Similarity=0.226 Sum_probs=106.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc-----
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS----- 1019 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~se----- 1019 (1163)
..+.+++.-..+.+.++++++.. + ..|. .+ -+.+-+||+||+|+|||+.++.|++++|+.++...-+.
T Consensus 78 P~t~eeLAVHkkKI~eVk~WL~~-~---~~~~-~~--l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~ 150 (634)
T KOG1970|consen 78 PRTLEELAVHKKKISEVKQWLKQ-V---AEFT-PK--LGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEP 150 (634)
T ss_pred cccHHHHhhhHHhHHHHHHHHHH-H---HHhc-cC--CCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCcccccc
Confidence 34566777666666777766651 1 1111 11 12235899999999999999999999999998866322
Q ss_pred --cccccccchHHH------HHHHHHHHhc------------cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHh
Q 001076 1020 --ITSKWFGEGEKY------VKAVFSLASK------------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1079 (1163)
Q Consensus 1020 --L~s~~~Ge~E~~------Ir~lF~~A~k------------~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~L 1079 (1163)
+.....+-+..+ +......+.+ ..+.+|+|||+-..+... ..+..+.++. ++..
T Consensus 151 ~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d----~~~~f~evL~-~y~s- 224 (634)
T KOG1970|consen 151 ENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD----DSETFREVLR-LYVS- 224 (634)
T ss_pred ccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh----hHHHHHHHHH-HHHh-
Confidence 111111111111 1111222211 246699999997665322 2233333333 2211
Q ss_pred cCCcccCCCCEEEEEEe-CCCCCCCHHH--------HhccCcEEEecCCCHHHHHHHHHHHHhhCC-------CCChhhH
Q 001076 1080 DGLRTKDKERVLVLAAT-NRPFDLDEAV--------VRRLPRRLMVNLPDAPNREKIIRVILAKEE-------LASDVDL 1143 (1163)
Q Consensus 1080 dgl~~k~~~~VlVIaTT-N~p~~Ld~aL--------lrRFd~vI~I~~Pd~eeR~eILk~ll~k~~-------l~~dvdl 1143 (1163)
. ...++++|.|- +.++..+... .-|+ .+|.|.+-...-..+.++.++..+. +.....+
T Consensus 225 --~---g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v 298 (634)
T KOG1970|consen 225 --I---GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEV 298 (634)
T ss_pred --c---CCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHH
Confidence 1 22444544443 2223322211 1155 4788888888888888888886532 2224456
Q ss_pred HHHHHHcCCCCHHHHH
Q 001076 1144 EGIANMADGYSGSDLK 1159 (1163)
Q Consensus 1144 ~~LA~~TeGySgaDLk 1159 (1163)
+.|+..+.|--...|.
T Consensus 299 ~~i~~~s~GDIRsAIn 314 (634)
T KOG1970|consen 299 ELICQGSGGDIRSAIN 314 (634)
T ss_pred HHHHHhcCccHHHHHh
Confidence 6666666654444433
No 295
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.58 E-value=0.00066 Score=76.21 Aligned_cols=78 Identities=22% Similarity=0.411 Sum_probs=52.5
Q ss_pred CCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCC------------CCCCCHHHHhcc
Q 001076 1043 APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR------------PFDLDEAVVRRL 1110 (1163)
Q Consensus 1043 ~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~------------p~~Ld~aLlrRF 1110 (1163)
-|+||||||++-| .-....++++.+.. +-.++++++ ||+ |.-++-.|+.|.
T Consensus 288 vpGVLFIDEvHML-----DIEcFsFlNrAlE~-----------d~~Piiima-TNrgit~iRGTn~~SphGiP~D~lDR~ 350 (454)
T KOG2680|consen 288 VPGVLFIDEVHML-----DIECFSFLNRALEN-----------DMAPIIIMA-TNRGITRIRGTNYRSPHGIPIDLLDRM 350 (454)
T ss_pred ccceEEEeeehhh-----hhHHHHHHHHHhhh-----------ccCcEEEEE-cCCceEEeecCCCCCCCCCcHHHhhhh
Confidence 4789999998866 11222233332221 224555554 443 678888999998
Q ss_pred CcEEEecCCCHHHHHHHHHHHHhhCCCC
Q 001076 1111 PRRLMVNLPDAPNREKIIRVILAKEELA 1138 (1163)
Q Consensus 1111 d~vI~I~~Pd~eeR~eILk~ll~k~~l~ 1138 (1163)
.+|.-.+.+.++..+||+.-+.++.+.
T Consensus 351 -lII~t~py~~~d~~~IL~iRc~EEdv~ 377 (454)
T KOG2680|consen 351 -LIISTQPYTEEDIKKILRIRCQEEDVE 377 (454)
T ss_pred -heeecccCcHHHHHHHHHhhhhhhccc
Confidence 678888889999999999999886654
No 296
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.00087 Score=75.00 Aligned_cols=121 Identities=7% Similarity=0.048 Sum_probs=78.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcE--------------EEEecccccccc-cc--chHHHHHHHHHHHhc---
Q 001076 982 KPCKGILLFGPPGTGKTMLAKAVATEAGANF--------------INISMSSITSKW-FG--EGEKYVKAVFSLASK--- 1041 (1163)
Q Consensus 982 ~p~kgVLL~GPPGTGKT~LArALA~eLg~pf--------------i~Id~seL~s~~-~G--e~E~~Ir~lF~~A~k--- 1041 (1163)
.++..+||+||.|+||..+|.++|+.+-+.- ..-..+++.--. .+ -....++.+-.....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 4567899999999999999999998883321 000111211100 00 112234444333221
Q ss_pred --cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCC
Q 001076 1042 --IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLP 1119 (1163)
Q Consensus 1042 --~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~P 1119 (1163)
...-|++|+++|.|- ....|.|+..++. ++.++++|.+|+.++.+.+.+++|+ .++.++.+
T Consensus 85 e~~~~KV~II~~ae~m~------------~~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLpTI~SRC-q~~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN------------KQSANSLLKLIEE----PPKNTYGIFTTRNENNILNTILSRC-VQYVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhhC------------HHHHHHHHHhhcC----CCCCeEEEEEECChHhCchHhhhhe-eeeecCCh
Confidence 235799999999872 3345667776665 3467899999999999999999998 45666555
No 297
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.54 E-value=0.00065 Score=82.44 Aligned_cols=192 Identities=19% Similarity=0.222 Sum_probs=113.3
Q ss_pred cchhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhc-CCCCCCCceEEEEcCCCChHHHHHHH
Q 001076 925 VTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCK-GQLTKPCKGILLFGPPGTGKTMLAKA 1003 (1163)
Q Consensus 925 v~~~e~ek~ll~~iip~~e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k-~~l~~p~kgVLL~GPPGTGKT~LArA 1003 (1163)
....++.+.+...++| .|.|.+.+|.-+.-.+.--.. .... +--.+...+|+|.|.||+||+-+.++
T Consensus 330 ~~~~nly~~lv~Sl~P---------sIyGhe~VK~GilL~LfGGv~---K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~ 397 (764)
T KOG0480|consen 330 SKDENLYKNLVNSLFP---------SIYGHELVKAGILLSLFGGVH---KSAGEGTSLRGDINVCIVGDPGTGKSQFLKA 397 (764)
T ss_pred hcCchHHHHHHHhhCc---------cccchHHHHhhHHHHHhCCcc---ccCCCCccccCCceEEEeCCCCccHHHHHHH
Confidence 3355566667776666 688999999887544421111 0111 11123335699999999999999999
Q ss_pred HHHHhCCcEEEEeccc----cccccccchHHHHHHHHHHHh---ccCCeEEEEccccccccCCCCcchHHHHHHHHHHHH
Q 001076 1004 VATEAGANFINISMSS----ITSKWFGEGEKYVKAVFSLAS---KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1163)
Q Consensus 1004 LA~eLg~pfi~Id~se----L~s~~~Ge~E~~Ir~lF~~A~---k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL 1076 (1163)
++.-+...++..--+. |....+...+. -...+ +|. -...+|..|||+|.|- ...|.++-..+.+-.
T Consensus 398 v~~fsPR~vYtsGkaSSaAGLTaaVvkD~es-gdf~i-EAGALmLADnGICCIDEFDKMd-----~~dqvAihEAMEQQt 470 (764)
T KOG0480|consen 398 VCAFSPRSVYTSGKASSAAGLTAAVVKDEES-GDFTI-EAGALMLADNGICCIDEFDKMD-----VKDQVAIHEAMEQQT 470 (764)
T ss_pred HhccCCcceEecCcccccccceEEEEecCCC-Cceee-ecCcEEEccCceEEechhcccC-----hHhHHHHHHHHHhhe
Confidence 9988766655432211 11111111100 00001 111 1235799999999882 223444433333332
Q ss_pred HHh--cCCcccCCCCEEEEEEeCCC-------------CCCCHHHHhccCcEEE-ecCCCHHHHHHHHHHHHhhC
Q 001076 1077 VNW--DGLRTKDKERVLVLAATNRP-------------FDLDEAVVRRLPRRLM-VNLPDAPNREKIIRVILAKE 1135 (1163)
Q Consensus 1077 ~~L--dgl~~k~~~~VlVIaTTN~p-------------~~Ld~aLlrRFd~vI~-I~~Pd~eeR~eILk~ll~k~ 1135 (1163)
..+ -|+..+-+.+--|||++|+. -.+...+++|||..+. ++-|+...-..|-++++...
T Consensus 471 ISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h 545 (764)
T KOG0480|consen 471 ISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLH 545 (764)
T ss_pred ehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHh
Confidence 222 23444445677889999873 1567899999997644 48899888888888888763
No 298
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.49 E-value=0.0018 Score=67.49 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=22.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
..+.++|+||+|||+++..|+..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 579999999999999999999877
No 299
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.48 E-value=0.00015 Score=70.67 Aligned_cols=100 Identities=21% Similarity=0.233 Sum_probs=68.5
Q ss_pred eeecCCCCCCCCCC--CCCCCCCCcccccccccccCCCcchhhHHHHHHHHHHHHhhccCC-CeEEEEcchhhhhcCC--
Q 001076 646 VRFDRSIPEGNNLG--GFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSS-PLIVFVKDIEKSLTGN-- 720 (1163)
Q Consensus 646 V~Fd~~~~~~~~l~--~~c~~~~~ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~-P~IIffddid~~La~~-- 720 (1163)
|.+.+|++.||+.. ..|..-...|+.....-+. +.+.++.+..++.+|+.+.. .+ |.||||||+|.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~-~~~~~~~~~~i~~~~~~~~~---~~~~~vl~iDe~d~l~~~~~~ 76 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI-SSYAGDSEQKIRDFFKKAKK---SAKPCVLFIDEIDKLFPKSQP 76 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH-TSSTTHHHHHHHHHHHHHHH---TSTSEEEEEETGGGTSHHCST
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccc-cccccccccccccccccccc---cccceeeeeccchhccccccc
Confidence 56778999999876 2222222234444333222 56888888899999988776 54 9999999999966644
Q ss_pred ------hhhHHHHHHHHhcCCC---CEEEEEecccccc
Q 001076 721 ------NDAYGALKSKLENLPS---NVVVIGSHTQLDS 749 (1163)
Q Consensus 721 ------~~~~~~i~s~L~~L~g---~VivIgs~~~~d~ 749 (1163)
..+.+.|...|..... +++||+++|+.+.
T Consensus 77 ~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~ 114 (132)
T PF00004_consen 77 SSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDK 114 (132)
T ss_dssp SSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGG
T ss_pred ccccccccccceeeecccccccccccceeEEeeCChhh
Confidence 4555566666666644 6999999996443
No 300
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.48 E-value=8e-05 Score=90.59 Aligned_cols=143 Identities=26% Similarity=0.340 Sum_probs=92.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEecccc-----ccccccchHHHHHHHHHHHhcc-----CCeEEEEccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSI-----TSKWFGEGEKYVKAVFSLASKI-----APSVVFVDEV 1052 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL--g~pfi~Id~seL-----~s~~~Ge~E~~Ir~lF~~A~k~-----~PsILfIDEI 1052 (1163)
-++||.|.|||||-.||++|-+.. .-||+.++|..+ .+.+||..+......+..-++- ..+.+|+|||
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeI 416 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEI 416 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHh
Confidence 469999999999999999997666 578999999764 3455663333222222222221 2369999999
Q ss_pred cccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCC-------CCCCHHHHhccCcEEEecCCCHHHHH
Q 001076 1053 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNRE 1125 (1163)
Q Consensus 1053 D~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~I~~Pd~eeR~ 1125 (1163)
..| +-..+..+.+++++-...--|... ....|.||+||+.. ..+.+.+.-|+ ..+.|.+|...+|.
T Consensus 417 gd~-----p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~~g~fredLyyrL-~~~~i~lP~lr~R~ 489 (606)
T COG3284 417 GDM-----PLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVEQGRFREDLYYRL-NAFVITLPPLRERS 489 (606)
T ss_pred hhc-----hHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHHcCCchHHHHHHh-cCeeeccCchhccc
Confidence 977 334455555666655443333333 45789999999873 34445555566 46777888877764
Q ss_pred ---HHHHHHHhh
Q 001076 1126 ---KIIRVILAK 1134 (1163)
Q Consensus 1126 ---eILk~ll~k 1134 (1163)
-.+.+++.+
T Consensus 490 d~~~~l~~~~~~ 501 (606)
T COG3284 490 DRIPLLDRILKR 501 (606)
T ss_pred ccHHHHHHHHHH
Confidence 444455544
No 301
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.43 E-value=0.00024 Score=90.75 Aligned_cols=155 Identities=25% Similarity=0.306 Sum_probs=100.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc-----cc--hHHHHHHHH-----HHHhccCCeEEEEccccc
Q 001076 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF-----GE--GEKYVKAVF-----SLASKIAPSVVFVDEVDS 1054 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~-----Ge--~E~~Ir~lF-----~~A~k~~PsILfIDEID~ 1054 (1163)
+|++||||+|||+.|..+|.++|+.++.+|.++..+... +. ....+.+.| .........||++||+|.
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 699999999999999999999999999999887554332 11 112333333 001112234999999998
Q ss_pred cccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhh
Q 001076 1055 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1134 (1163)
Q Consensus 1055 L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k 1134 (1163)
+++ . . +..+..+...... ..+-||+++|........-+.|....++|..|+.+.+...+..++..
T Consensus 440 ~~~-~-d-------Rg~v~~l~~l~~k------s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~s 504 (871)
T KOG1968|consen 440 MFG-E-D-------RGGVSKLSSLCKK------SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKS 504 (871)
T ss_pred ccc-h-h-------hhhHHHHHHHHHh------ccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcc
Confidence 874 1 1 2222333332221 23566778887766665555554456999999999988877777765
Q ss_pred CCC-CChhhHHHHHHHcCCCCHHHHHh
Q 001076 1135 EEL-ASDVDLEGIANMADGYSGSDLKV 1160 (1163)
Q Consensus 1135 ~~l-~~dvdl~~LA~~TeGySgaDLk~ 1160 (1163)
..+ ..+..++++.+.+ ++||+.
T Consensus 505 e~~ki~~~~l~~~s~~~----~~DiR~ 527 (871)
T KOG1968|consen 505 EGIKISDDVLEEISKLS----GGDIRQ 527 (871)
T ss_pred cceecCcHHHHHHHHhc----ccCHHH
Confidence 443 3555677777777 455543
No 302
>PHA00729 NTP-binding motif containing protein
Probab=97.41 E-value=0.0003 Score=77.17 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=24.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANF 1012 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pf 1012 (1163)
.+|+|+|+||||||+||.+|+++++..+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l 45 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKL 45 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 4799999999999999999999986433
No 303
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.40 E-value=0.00095 Score=76.25 Aligned_cols=161 Identities=20% Similarity=0.363 Sum_probs=96.7
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHH---HHhCCcEEEEeccc--cc---
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA---TEAGANFINISMSS--IT--- 1021 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA---~eLg~pfi~Id~se--L~--- 1021 (1163)
.+.|..+..+.+.+++..-.. ......|++.||.|+|||+|..... ++.|-+|+.+.... ..
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~----------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL----------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKI 94 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH----------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHH
Confidence 466888888888777754221 2234689999999999999666543 35566666554322 11
Q ss_pred ----------------cccccchHHHHHHHHHHHhc---cCC-eEEE-EccccccccCCCCcchHHHHHHHHHHHHHHhc
Q 001076 1022 ----------------SKWFGEGEKYVKAVFSLASK---IAP-SVVF-VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1080 (1163)
Q Consensus 1022 ----------------s~~~Ge~E~~Ir~lF~~A~k---~~P-sILf-IDEID~L~g~r~s~~~~eal~~il~~LL~~Ld 1080 (1163)
.+.+|.....+..+....++ +.. .||| +||||-..+. ..++++.++-
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h------------~rQtllYnlf 162 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH------------SRQTLLYNLF 162 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc------------hhhHHHHHHH
Confidence 12233333344444333322 222 2554 5799966422 2244554444
Q ss_pred CCcccCCCCEEEEEEeCCCCCC---CHHHHhccCcE-EEe-cCCCHHHHHHHHHHHH
Q 001076 1081 GLRTKDKERVLVLAATNRPFDL---DEAVVRRLPRR-LMV-NLPDAPNREKIIRVIL 1132 (1163)
Q Consensus 1081 gl~~k~~~~VlVIaTTN~p~~L---d~aLlrRFd~v-I~I-~~Pd~eeR~eILk~ll 1132 (1163)
.+....+.+|.||+-|.+.+.+ ...+.+||..+ |.+ +.....+-..+++.++
T Consensus 163 Disqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 163 DISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 4444456899999999776544 45666799876 444 4446888888888887
No 304
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=97.38 E-value=0.0006 Score=83.38 Aligned_cols=88 Identities=30% Similarity=0.376 Sum_probs=74.7
Q ss_pred cceeEEccCCccceeecCCCCCccceEEEEeecCCc--------ceEEEEEecCC-ceEEEcCeecCCCceEEeeCCCEE
Q 001076 151 GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGP--------SGALLEITGGK-GEVEVNGNVHPKDSQVVLRGGDEL 221 (1163)
Q Consensus 151 ~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~--------~~a~le~~~~~-G~v~vNg~~~~k~~~~~L~~gDev 221 (1163)
...|+|||-..||+.+-+|+||..||.|.+. +.|. ...++-+.|+- || |+|.+++.+.+-+.++-|+.+
T Consensus 176 ~~~~~fgr~~~cD~~~eHpsISr~h~vlQy~-~~~~~~p~~s~~~g~~i~dlgsThgt-~~NK~rvppk~yir~~Vg~v~ 253 (793)
T KOG1881|consen 176 AAACLFGRLGGCDVALEHPSISRFHAVLQYK-ASGPDDPCASNGEGWYIYDLGSTHGT-FLNKDRVPPKVYIRDRVGHVA 253 (793)
T ss_pred ceeEEecccCCCccccccCcccccceeeecc-CCCCCccccCCCCceEEeeccccccc-eeccccCCCcchhhhhHHHHH
Confidence 4789999999999999999999999998865 2332 24566666655 99 799999999999999999999
Q ss_pred EEccCCCeeEEeeecCcccC
Q 001076 222 VFSPSGKHSYIFQQLSDDTL 241 (1163)
Q Consensus 222 ~f~~~~~~ayifq~l~~~~~ 241 (1163)
-|+-+.+ .||||+.-.+..
T Consensus 254 ~fggsTr-l~i~Qgp~eD~E 272 (793)
T KOG1881|consen 254 RFGGSTR-LYIFQGPEEDEE 272 (793)
T ss_pred HhcCceE-EEEeeCCCcCCC
Confidence 9998887 999999776665
No 305
>PF14516 AAA_35: AAA-like domain
Probab=97.38 E-value=0.0092 Score=69.24 Aligned_cols=164 Identities=14% Similarity=0.152 Sum_probs=89.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccc-------------------------------h
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-------------------------------G 1028 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~~~Ge-------------------------------~ 1028 (1163)
+..-+.|.||..+|||+|...+.+.+ |+..+.+|+..+....+.. .
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 34579999999999999998887666 7888888876542211110 1
Q ss_pred HHHHHHHHHH---HhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcC-CcccCCCCEEEEEEeCCCCCCCH
Q 001076 1029 EKYVKAVFSL---ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG-LRTKDKERVLVLAATNRPFDLDE 1104 (1163)
Q Consensus 1029 E~~Ir~lF~~---A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldg-l~~k~~~~VlVIaTTN~p~~Ld~ 1104 (1163)
...+...|+. ..-..|-||+|||||.++.... ....++..+...... .......++.+|.+......+..
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~------~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~ 183 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ------IADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIIL 183 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc------hHHHHHHHHHHHHHhcccCcccceEEEEEecCccccccc
Confidence 1122223332 1224688999999999974221 112222222221111 01111234444444332211111
Q ss_pred HH-Hh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCH
Q 001076 1105 AV-VR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1155 (1163)
Q Consensus 1105 aL-lr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySg 1155 (1163)
.. .+ .+...|.++.-+.++-..+++.+-.. + ....++.|-..|.|+-.
T Consensus 184 ~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~-~~~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 184 DINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--F-SQEQLEQLMDWTGGHPY 234 (331)
T ss_pred CCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--C-CHHHHHHHHHHHCCCHH
Confidence 11 11 23345777778888888888776433 2 33448888888888643
No 306
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.37 E-value=0.0011 Score=69.30 Aligned_cols=71 Identities=24% Similarity=0.361 Sum_probs=46.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------ccc-----------------------chH-----
Q 001076 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG-----------------------EGE----- 1029 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~------~~G-----------------------e~E----- 1029 (1163)
+|++||||+|||+|+..++.+. |-+++.++..+-... .+| ..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7999999999999999887655 667766665321100 000 000
Q ss_pred HHHHHHHHHHhccCCeEEEEcccccccc
Q 001076 1030 KYVKAVFSLASKIAPSVVFVDEVDSMLG 1057 (1163)
Q Consensus 1030 ~~Ir~lF~~A~k~~PsILfIDEID~L~g 1057 (1163)
..+..+...+....|.+|+||++..++.
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1134455555667899999999987753
No 307
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.36 E-value=0.00052 Score=75.21 Aligned_cols=76 Identities=17% Similarity=0.265 Sum_probs=43.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc--cccc--------cccchHHHHHHHHHHHh--ccCCeEE
Q 001076 980 LTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS--ITSK--------WFGEGEKYVKAVFSLAS--KIAPSVV 1047 (1163)
Q Consensus 980 l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~se--L~s~--------~~Ge~E~~Ir~lF~~A~--k~~PsIL 1047 (1163)
+.+.+..+||||+||+|||++|+.++. ..-++..|.+. +.+. ....+-+.+...+..+. .+...+|
T Consensus 8 ~~~~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtV 85 (220)
T TIGR01618 8 IKRIPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNI 85 (220)
T ss_pred cCCCCcEEEEECCCCCCHHHHHHhcCC--CCEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEE
Confidence 344446799999999999999999862 23344444422 0000 00111122333333332 2456899
Q ss_pred EEcccccccc
Q 001076 1048 FVDEVDSMLG 1057 (1163)
Q Consensus 1048 fIDEID~L~g 1057 (1163)
+||+|+.|..
T Consensus 86 VIDsI~~l~~ 95 (220)
T TIGR01618 86 VIDNISALQN 95 (220)
T ss_pred EEecHHHHHH
Confidence 9999998753
No 308
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.36 E-value=0.00075 Score=72.31 Aligned_cols=73 Identities=23% Similarity=0.434 Sum_probs=49.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccc-----------------------cchHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWF-----------------------GEGEKYVKAVFSL 1038 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~~~-----------------------Ge~E~~Ir~lF~~ 1038 (1163)
.-++|+||||+|||+++..++... +..++.++...+....+ .+....+..+...
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~ 92 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTSKF 92 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHHHH
Confidence 458999999999999999987654 66788888754110000 0111224444455
Q ss_pred HhccCCeEEEEcccccccc
Q 001076 1039 ASKIAPSVVFVDEVDSMLG 1057 (1163)
Q Consensus 1039 A~k~~PsILfIDEID~L~g 1057 (1163)
+.+..+.+|+||-|..++.
T Consensus 93 ~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 93 IDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HhhcCccEEEEeCcHHHhH
Confidence 5666889999999998863
No 309
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.32 E-value=0.0016 Score=76.50 Aligned_cols=30 Identities=40% Similarity=0.630 Sum_probs=25.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 001076 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGA 1010 (1163)
Q Consensus 981 ~~p~kgVLL~GPPGTGKT~LArALA~eLg~ 1010 (1163)
..+++||+|||++|+|||+|.-.....+..
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 346799999999999999999999888744
No 310
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0019 Score=82.37 Aligned_cols=162 Identities=21% Similarity=0.299 Sum_probs=109.9
Q ss_pred cccccCc-HHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 001076 948 FDDIGAL-ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1016 (1163)
Q Consensus 948 fddI~Gl-eevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL----------g~pfi~Id 1016 (1163)
++.++|. ++..+.+.+.+.. +..++-+|.|.||+|||.++.-+|+.. +..++.++
T Consensus 185 ldPvigr~deeirRvi~iL~R--------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~ 250 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR--------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALD 250 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc--------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEE
Confidence 3456665 5555555555431 111567999999999999999999887 34567777
Q ss_pred ccccc--cccccchHHHHHHHHHHHhcc-CCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEE
Q 001076 1017 MSSIT--SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1093 (1163)
Q Consensus 1017 ~seL~--s~~~Ge~E~~Ir~lF~~A~k~-~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVI 1093 (1163)
+..+. .++.|+.+..++.+..++... ...||||||++-+.+...+.+ .....+.|.-.+. +..+.+|
T Consensus 251 ~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~----~~d~~nlLkp~L~------rg~l~~I 320 (898)
T KOG1051|consen 251 FGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG----AIDAANLLKPLLA------RGGLWCI 320 (898)
T ss_pred hhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch----HHHHHHhhHHHHh------cCCeEEE
Confidence 76554 345678889999999988843 567999999998876554422 2223333322221 2348999
Q ss_pred EEeCC-----CCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhh
Q 001076 1094 AATNR-----PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1134 (1163)
Q Consensus 1094 aTTN~-----p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k 1134 (1163)
+||.. .-.-+|+|-+||+ .+.++.|+.++-..|+..+-..
T Consensus 321 GatT~e~Y~k~iekdPalErrw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 321 GATTLETYRKCIEKDPALERRWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred ecccHHHHHHHHhhCcchhhCcc-eeEeccCcccchhhhhhhhhhh
Confidence 98753 2356789999995 6778999988877777776655
No 311
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.27 E-value=0.00044 Score=67.07 Aligned_cols=23 Identities=48% Similarity=0.879 Sum_probs=20.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 001076 987 ILLFGPPGTGKTMLAKAVATEAG 1009 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA~eLg 1009 (1163)
|.|+||||+|||+||+.||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988874
No 312
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.23 E-value=0.00049 Score=83.07 Aligned_cols=168 Identities=24% Similarity=0.358 Sum_probs=92.6
Q ss_pred hhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 001076 927 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 1006 (1163)
Q Consensus 927 ~~e~ek~ll~~iip~~e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~ 1006 (1163)
...+...++..+.| .|.|...+|..+.-.+.--. +..-....-.+...+|||+|.|||||+-+.+++++
T Consensus 436 d~~i~~rIiaSiaP---------sIyGh~~VK~AvAlaLfGGv--~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK 504 (854)
T KOG0477|consen 436 DPPIKERIIASIAP---------SIYGHEDVKRAVALALFGGV--PKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEK 504 (854)
T ss_pred CccHHHHHHHhhCc---------hhhchHHHHHHHHHHHhcCC--ccCCCCCceeccceeEEEecCCCccHHHHHHHHHh
Confidence 44455556666665 67899999998865542111 10000000012224599999999999999999998
Q ss_pred HhCCcEEEEeccc-------------cccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHH
Q 001076 1007 EAGANFINISMSS-------------ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN 1073 (1163)
Q Consensus 1007 eLg~pfi~Id~se-------------L~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~ 1073 (1163)
.....++.--... +...|.=+. +..-.| ..+|.+|||+|.|-.+... .-++++.. +
T Consensus 505 ~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEa-----GALVLA---DkGvClIDEFDKMndqDRt-SIHEAMEQ--Q 573 (854)
T KOG0477|consen 505 TSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEA-----GALVLA---DKGVCLIDEFDKMNDQDRT-SIHEAMEQ--Q 573 (854)
T ss_pred cCcceeEeccCCccccceeEEEeeCCccceeeecc-----CeEEEc---cCceEEeehhhhhcccccc-hHHHHHHh--c
Confidence 8866555432111 111121110 011122 3479999999999533322 22333321 0
Q ss_pred HHHHHhcCCcccCCCCEEEEEEeCCC-----------C--CCCHHHHhccCcEEEe
Q 001076 1074 EFMVNWDGLRTKDKERVLVLAATNRP-----------F--DLDEAVVRRLPRRLMV 1116 (1163)
Q Consensus 1074 ~LL~~Ldgl~~k~~~~VlVIaTTN~p-----------~--~Ld~aLlrRFd~vI~I 1116 (1163)
..-..--|+...-+.+..||||+|+. + .|.+.+++|||....+
T Consensus 574 SISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVv 629 (854)
T KOG0477|consen 574 SISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVV 629 (854)
T ss_pred chhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeee
Confidence 11111112322334678999999871 1 5668899999865555
No 313
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.17 E-value=0.00036 Score=67.84 Aligned_cols=31 Identities=42% Similarity=0.739 Sum_probs=28.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001076 987 ILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA~eLg~pfi~Id~ 1017 (1163)
|+|.|+||+|||++|+.||+.+|++++.+|.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999999887764
No 314
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.16 E-value=0.00047 Score=73.66 Aligned_cols=123 Identities=15% Similarity=0.201 Sum_probs=58.8
Q ss_pred EEEEcCCCChHHHHHHHH-HHHh---CCcEEEEeccccccccccc----hHH-------------HHHHHHHHHhccCCe
Q 001076 987 ILLFGPPGTGKTMLAKAV-ATEA---GANFINISMSSITSKWFGE----GEK-------------YVKAVFSLASKIAPS 1045 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArAL-A~eL---g~pfi~Id~seL~s~~~Ge----~E~-------------~Ir~lF~~A~k~~Ps 1045 (1163)
.|++|.||+|||+.|... +... |.+++. +...|.-..+.. ... ...........-..+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 589999999999977655 4443 666655 443222111111 000 001111111111568
Q ss_pred EEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCC
Q 001076 1046 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLP 1119 (1163)
Q Consensus 1046 ILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~P 1119 (1163)
||+|||+..+++.+.... ......+ +++.. .....+-||.+|..+..++..+++..+..+.+..+
T Consensus 82 liviDEa~~~~~~r~~~~--~~~~~~~-~~l~~------hRh~g~diiliTQ~~~~id~~ir~lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKG--KKVPEII-EFLAQ------HRHYGWDIILITQSPSQIDKFIRDLVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T-T------HHH-HGGGG------CCCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE-
T ss_pred EEEEECChhhcCCCcccc--ccchHHH-HHHHH------hCcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEee
Confidence 999999999997765411 1112222 22222 23456888999999999999998877766666544
No 315
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=97.05 E-value=0.00074 Score=78.73 Aligned_cols=75 Identities=29% Similarity=0.446 Sum_probs=63.9
Q ss_pred ecceeEEccCCccceeecCCCC--CccceEEEEeecCCcceEEEEEecCCceEEEcCeecCCCce-EEeeCCCEEEEccC
Q 001076 150 TGAVFTVGHNRQCDLYLKDPSI--SKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQ-VVLRGGDELVFSPS 226 (1163)
Q Consensus 150 ~~~~~t~G~~~~cd~~l~d~~~--s~~~c~l~~~~~~g~~~a~le~~~~~G~v~vNg~~~~k~~~-~~L~~gDev~f~~~ 226 (1163)
.....+|||+..||-.+.|+.- |+-||+|... +|. ++|=++|+||+ +|||..+.-|.- +.|+.||||-++
T Consensus 24 ~~~~g~IGrs~dcdW~i~D~~~~VS~~Hc~I~~~--dg~--f~L~DtS~g~l-~VNgs~~~~g~~~~RLqqGd~i~iG-- 96 (430)
T COG3456 24 DRGGGVIGRSPDCDWQIDDPERFVSKQHCTISYR--DGG--FCLTDTSNGGL-LVNGSDLPLGEGSARLQQGDEILIG-- 96 (430)
T ss_pred hcCCcccccCCCCCccccCcccccchhheEEEec--CCe--EEEEecCCCce-eecccccCCCCCccccccCCEEeec--
Confidence 3467899999999999999875 9999999864 555 78999998888 799999999888 999999999773
Q ss_pred CCeeEEee
Q 001076 227 GKHSYIFQ 234 (1163)
Q Consensus 227 ~~~ayifq 234 (1163)
-|||.
T Consensus 97 ---~y~i~ 101 (430)
T COG3456 97 ---RYIIR 101 (430)
T ss_pred ---cEEEE
Confidence 37776
No 316
>PRK08118 topology modulation protein; Reviewed
Probab=97.05 E-value=0.0013 Score=68.94 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=30.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~ 1017 (1163)
..|+++||||+|||+||+.|++.++++++.+|.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 369999999999999999999999999998884
No 317
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.05 E-value=0.001 Score=78.96 Aligned_cols=175 Identities=22% Similarity=0.283 Sum_probs=96.8
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec----cccccccc
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISM----SSITSKWF 1025 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~----seL~s~~~ 1025 (1163)
.|.|.+++|+.+.-++.- .....+..+--.+..-+|||-|.|||.|+-|.+-+-+-..+-++.--- +.|.....
T Consensus 332 SIfG~~DiKkAiaClLFg--GsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~ 409 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFG--GSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVI 409 (729)
T ss_pred hhcCchhHHHHHHHHhhc--CccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEE
Confidence 578999999998665521 111111111112334569999999999999999987766555543211 11111100
Q ss_pred cch---HHHHH-HHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCC--
Q 001076 1026 GEG---EKYVK-AVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-- 1099 (1163)
Q Consensus 1026 Ge~---E~~Ir-~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p-- 1099 (1163)
..+ +-++. ...-. ...+|++|||+|.|-.. ..-.-++++.. ++.-..--|++..-+.+.-|+|++|+.
T Consensus 410 RD~~tReFylEGGAMVL---ADgGVvCIDEFDKMre~-DRVAIHEAMEQ--QTISIAKAGITT~LNSRtSVLAAANpvfG 483 (729)
T KOG0481|consen 410 RDPSTREFYLEGGAMVL---ADGGVVCIDEFDKMRED-DRVAIHEAMEQ--QTISIAKAGITTTLNSRTSVLAAANPVFG 483 (729)
T ss_pred ecCCcceEEEecceEEE---ecCCEEEeehhhccCch-hhhHHHHHHHh--hhHHHhhhcceeeecchhhhhhhcCCccc
Confidence 000 00000 00001 13579999999988211 11122333322 233333457777778889999999873
Q ss_pred ---------CC--CCHHHHhccCcEEEecCCCHH-HHHHHHHHHH
Q 001076 1100 ---------FD--LDEAVVRRLPRRLMVNLPDAP-NREKIIRVIL 1132 (1163)
Q Consensus 1100 ---------~~--Ld~aLlrRFd~vI~I~~Pd~e-eR~eILk~ll 1132 (1163)
++ +.+.+++|||.++.+.---.+ .-..|.++.+
T Consensus 484 RyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI 528 (729)
T KOG0481|consen 484 RYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVI 528 (729)
T ss_pred cccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhh
Confidence 23 448999999998888543333 3334444433
No 318
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.04 E-value=0.014 Score=75.63 Aligned_cols=153 Identities=16% Similarity=0.217 Sum_probs=85.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc---c-------c-----c---------------chHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK---W-------F-----G---------------EGEKYVKA 1034 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~---~-------~-----G---------------e~E~~Ir~ 1034 (1163)
+-++|+||+|.|||+++...++..+ ++..+++..-... + + + .....+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4589999999999999999888777 6666654321000 0 0 0 00112233
Q ss_pred HHHHHhc-cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcE
Q 001076 1035 VFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRR 1113 (1163)
Q Consensus 1035 lF~~A~k-~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~v 1113 (1163)
++..... ..|.+|+|||++.+- . ......+..|+ +.. +.++.+|.++.....+.-.-++.-+..
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~----~----~~~~~~l~~l~---~~~----~~~~~lv~~sR~~~~~~~~~l~~~~~~ 176 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT----N----PEIHEAMRFFL---RHQ----PENLTLVVLSRNLPPLGIANLRVRDQL 176 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC----C----hHHHHHHHHHH---HhC----CCCeEEEEEeCCCCCCchHhHHhcCcc
Confidence 3333333 568999999999651 1 11222333333 222 133445446654222321111212234
Q ss_pred EEec----CCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCH
Q 001076 1114 LMVN----LPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1155 (1163)
Q Consensus 1114 I~I~----~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySg 1155 (1163)
+.+. ..+.++-.+++...+... .+..++..|.+.|+|.-.
T Consensus 177 ~~l~~~~l~f~~~e~~~ll~~~~~~~--~~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 177 LEIGSQQLAFDHQEAQQFFDQRLSSP--IEAAESSRLCDDVEGWAT 220 (903)
T ss_pred eecCHHhCCCCHHHHHHHHHhccCCC--CCHHHHHHHHHHhCChHH
Confidence 5555 668888888887654331 355667888888888743
No 319
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.03 E-value=0.00085 Score=81.91 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=48.4
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEec
Q 001076 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISM 1017 (1163)
Q Consensus 947 tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL-g~pfi~Id~ 1017 (1163)
-|+|+.|++++++.+.+++..... ++.....-++|.||||+|||+||+.||+.+ .++++.+..
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~--------gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQ--------GLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHH--------hcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 477899999999999998843222 112233468999999999999999999988 567777644
No 320
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.01 E-value=0.0035 Score=73.85 Aligned_cols=96 Identities=23% Similarity=0.390 Sum_probs=60.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------ccc--------chHHHHHHHHHHHhccCCeE
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG--------EGEKYVKAVFSLASKIAPSV 1046 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~------~~G--------e~E~~Ir~lF~~A~k~~PsI 1046 (1163)
..-+||+|+||+|||+|+..+|..+ +.++++++..+-... .+| ..+..+..++..+....|.+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~l 161 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPDL 161 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCcE
Confidence 3458999999999999999998765 457777775431110 011 11223556666667788999
Q ss_pred EEEccccccccCCC--CcchHHHHHHHHHHHHHHh
Q 001076 1047 VFVDEVDSMLGRRE--NPGEHEAMRKMKNEFMVNW 1079 (1163)
Q Consensus 1047 LfIDEID~L~g~r~--s~~~~eal~~il~~LL~~L 1079 (1163)
|+||+|..++.... .++.....+.++..|....
T Consensus 162 VVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~la 196 (372)
T cd01121 162 VIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFA 196 (372)
T ss_pred EEEcchHHhhccccccCCCCHHHHHHHHHHHHHHH
Confidence 99999998864321 1223334555555555443
No 321
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.99 E-value=0.0037 Score=75.40 Aligned_cols=96 Identities=25% Similarity=0.395 Sum_probs=61.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc------cc--------chHHHHHHHHHHHhccCCeE
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW------FG--------EGEKYVKAVFSLASKIAPSV 1046 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~~------~G--------e~E~~Ir~lF~~A~k~~PsI 1046 (1163)
..-+||+|+||+|||+|+..+|... +..+++++..+-.... +| ..+..+..++....+..|.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~l 159 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPDL 159 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCCE
Confidence 3468999999999999999998765 6788888765422111 11 11223456666777778999
Q ss_pred EEEccccccccCCCC--cchHHHHHHHHHHHHHHh
Q 001076 1047 VFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNW 1079 (1163)
Q Consensus 1047 LfIDEID~L~g~r~s--~~~~eal~~il~~LL~~L 1079 (1163)
|+||+|..++..... ++.....+.++..|....
T Consensus 160 VVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~a 194 (446)
T PRK11823 160 VVIDSIQTMYSPELESAPGSVSQVRECAAELMRLA 194 (446)
T ss_pred EEEechhhhccccccCCCCCHHHHHHHHHHHHHHH
Confidence 999999988643211 223334455555555443
No 322
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.97 E-value=0.012 Score=65.43 Aligned_cols=165 Identities=19% Similarity=0.189 Sum_probs=95.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC---CcEEEEeccccc-----ccc----cc--------chHHHHHHHHHHHhcc-CC
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSIT-----SKW----FG--------EGEKYVKAVFSLASKI-AP 1044 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg---~pfi~Id~seL~-----s~~----~G--------e~E~~Ir~lF~~A~k~-~P 1044 (1163)
-+.++|+-|+|||++.++++..++ ...+.++-..+. ..+ .. ..++.-+.+.....+. .|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 589999999999999997776662 233445543321 111 11 1122233344444443 46
Q ss_pred eEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCC----HHHHhccCcEEEecCCC
Q 001076 1045 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD----EAVVRRLPRRLMVNLPD 1120 (1163)
Q Consensus 1045 sILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld----~aLlrRFd~vI~I~~Pd 1120 (1163)
-++++||.+.|. ....++++.+.+ .-... ...-.|++|+=..-...+- ..+..|++.+|.+++.+
T Consensus 133 v~l~vdEah~L~-----~~~le~Lrll~n----l~~~~--~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 133 VVLMVDEAHDLN-----DSALEALRLLTN----LEEDS--SKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred eEEeehhHhhhC-----hhHHHHHHHHHh----hcccc--cCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 899999999883 222333332211 11111 1113355555332211111 23444887778889999
Q ss_pred HHHHHHHHHHHHhh----CCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1121 APNREKIIRVILAK----EELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1121 ~eeR~eILk~ll~k----~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
.++-..++++.++. +.+.++.-+..++..+.|| +.-+.++|
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~-P~lin~~~ 246 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGI-PRLINNLA 246 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccc-hHHHHHHH
Confidence 99888999999876 3455667788889999885 44444443
No 323
>PRK07261 topology modulation protein; Provisional
Probab=96.96 E-value=0.0019 Score=67.92 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=30.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~Id~se 1019 (1163)
.|+|.|++|+|||+||+.|+..++.+++.+|.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 5899999999999999999999999998887543
No 324
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.94 E-value=0.0022 Score=66.31 Aligned_cols=59 Identities=25% Similarity=0.358 Sum_probs=37.3
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecccc
Q 001076 951 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSI 1020 (1163)
Q Consensus 951 I~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p---fi~Id~seL 1020 (1163)
++|.++..+.+...+.. .. ...++.++|+|++|+|||+|+++++..+... ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~~----------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-AQ----------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-TS----------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-HH----------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 56888888888887741 11 2234689999999999999999988777322 777776554
No 325
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.89 E-value=0.0039 Score=75.18 Aligned_cols=172 Identities=24% Similarity=0.291 Sum_probs=102.1
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE---------Eecccc
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN---------ISMSSI 1020 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~---------Id~seL 1020 (1163)
.|.|.+.+|+.+.-++.- .....+.++.-.+..-+|||.|.|-+.|+.|.+++.+.....+-. +..+-.
T Consensus 302 SI~GH~~vKkAillLLlG--GvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLG--GVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhc--cceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 467999999998665532 111222333333444569999999999999999998876332211 111111
Q ss_pred ccccccchHHHHHH-HHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHh--cCCcccCCCCEEEEEEeC
Q 001076 1021 TSKWFGEGEKYVKA-VFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATN 1097 (1163)
Q Consensus 1021 ~s~~~Ge~E~~Ir~-lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~L--dgl~~k~~~~VlVIaTTN 1097 (1163)
...- ..|..+.. ..-.|. .+|++|||+|.|. .....+.-.++.+-.+.+ -|+..+-+.++-|||++|
T Consensus 380 tD~e--TGERRLEAGAMVLAD---RGVVCIDEFDKMs-----DiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAAN 449 (818)
T KOG0479|consen 380 TDQE--TGERRLEAGAMVLAD---RGVVCIDEFDKMS-----DIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAAN 449 (818)
T ss_pred eccc--cchhhhhcCceEEcc---CceEEehhccccc-----chhHHHHHHHHhcceEEeEeccchhhhccceeeeeecC
Confidence 1111 12222211 222233 4899999999883 333344444444443333 355566678999999999
Q ss_pred CCC-------------CCCHHHHhccCcEEEe-cCCCHHHHHHHHHHHHh
Q 001076 1098 RPF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILA 1133 (1163)
Q Consensus 1098 ~p~-------------~Ld~aLlrRFd~vI~I-~~Pd~eeR~eILk~ll~ 1133 (1163)
+.+ -|++.+++|||..+.+ +.-+...-..|-++.+.
T Consensus 450 PvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLR 499 (818)
T KOG0479|consen 450 PVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVLR 499 (818)
T ss_pred ccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHHH
Confidence 732 4778999999976544 44455544555555554
No 326
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.87 E-value=0.00066 Score=71.40 Aligned_cols=27 Identities=48% Similarity=0.746 Sum_probs=22.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcE
Q 001076 986 GILLFGPPGTGKTMLAKAVATEA---GANF 1012 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eL---g~pf 1012 (1163)
+++|+|+||+|||+|++.++..+ ++++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 58999999999999999999888 5553
No 327
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.86 E-value=0.0011 Score=68.11 Aligned_cols=34 Identities=29% Similarity=0.533 Sum_probs=30.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
++..|+|+|+||+|||++|+.||+.++++|+..|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 3468999999999999999999999999998654
No 328
>PRK13949 shikimate kinase; Provisional
Probab=96.84 E-value=0.0042 Score=65.22 Aligned_cols=32 Identities=47% Similarity=0.708 Sum_probs=29.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
+.|+|.|+||+|||++++.+|+.++++|+..|
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36999999999999999999999999998877
No 329
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.82 E-value=0.0047 Score=67.11 Aligned_cols=34 Identities=38% Similarity=0.650 Sum_probs=29.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~s 1018 (1163)
.-++|+|+||+|||++|..+|.+. +..++.+++.
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 458999999999999999998755 7788888876
No 330
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.77 E-value=0.0051 Score=69.22 Aligned_cols=93 Identities=18% Similarity=0.293 Sum_probs=60.2
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-ccccc
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINIS-MSSIT 1021 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg---~pfi~Id-~seL~ 1021 (1163)
.++++++-.++..+.|.+++.. +...++|.||+|+|||++++++...+. ..++.+. ..++.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~---------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK---------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 4566777667777777666531 223589999999999999999987773 3344442 12211
Q ss_pred cc-----ccc-chHHHHHHHHHHHhccCCeEEEEcccc
Q 001076 1022 SK-----WFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1163)
Q Consensus 1022 s~-----~~G-e~E~~Ir~lF~~A~k~~PsILfIDEID 1053 (1163)
-. .+. ........+...+.+..|.+|+|+||.
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 00 111 111235566777788999999999995
No 331
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.76 E-value=0.007 Score=69.96 Aligned_cols=74 Identities=26% Similarity=0.336 Sum_probs=51.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc----------------cccccchHHHHHHHHHHHhccCCe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----------------SKWFGEGEKYVKAVFSLASKIAPS 1045 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~----------------s~~~Ge~E~~Ir~lF~~A~k~~Ps 1045 (1163)
.-++|+||||+|||+||..++.+. |..++.+|..... -......++.+..+....+...+.
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~ 135 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVD 135 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCc
Confidence 458999999999999988876554 6777777764411 111223344555555556667889
Q ss_pred EEEEccccccccC
Q 001076 1046 VVFVDEVDSMLGR 1058 (1163)
Q Consensus 1046 ILfIDEID~L~g~ 1058 (1163)
+|+||-|..|..+
T Consensus 136 lIVIDSv~al~~~ 148 (321)
T TIGR02012 136 IIVVDSVAALVPK 148 (321)
T ss_pred EEEEcchhhhccc
Confidence 9999999998754
No 332
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.71 E-value=0.013 Score=68.02 Aligned_cols=74 Identities=27% Similarity=0.337 Sum_probs=50.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc----------------ccccccchHHHHHHHHHHHhccCCe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----------------TSKWFGEGEKYVKAVFSLASKIAPS 1045 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL----------------~s~~~Ge~E~~Ir~lF~~A~k~~Ps 1045 (1163)
.-++|+||||+|||+||-.++.+. |...+.+|...- .-......++.+..+-..++...+.
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~ 135 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVD 135 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCC
Confidence 447999999999999999876444 777777776431 1111223344444444455667889
Q ss_pred EEEEccccccccC
Q 001076 1046 VVFVDEVDSMLGR 1058 (1163)
Q Consensus 1046 ILfIDEID~L~g~ 1058 (1163)
+|+||-|-.|.++
T Consensus 136 lIVIDSvaal~~~ 148 (325)
T cd00983 136 LIVVDSVAALVPK 148 (325)
T ss_pred EEEEcchHhhccc
Confidence 9999999998753
No 333
>PRK04296 thymidine kinase; Provisional
Probab=96.71 E-value=0.016 Score=61.88 Aligned_cols=69 Identities=19% Similarity=0.256 Sum_probs=40.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec--c--c----cccccccch-H----HHHHHHHHHH--hccCCeEE
Q 001076 986 GILLFGPPGTGKTMLAKAVATEA---GANFINISM--S--S----ITSKWFGEG-E----KYVKAVFSLA--SKIAPSVV 1047 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~--s--e----L~s~~~Ge~-E----~~Ir~lF~~A--~k~~PsIL 1047 (1163)
-+|++||+|+|||+++..++.++ +..++.+.. . . +.+. .|.. + .....++..+ ....+.+|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSR-IGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecC-CCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 37999999999999998888776 556555532 1 1 1111 1110 0 1122333332 23456899
Q ss_pred EEcccccc
Q 001076 1048 FVDEVDSM 1055 (1163)
Q Consensus 1048 fIDEID~L 1055 (1163)
+|||++.+
T Consensus 83 iIDEaq~l 90 (190)
T PRK04296 83 LIDEAQFL 90 (190)
T ss_pred EEEccccC
Confidence 99999754
No 334
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.71 E-value=0.013 Score=64.62 Aligned_cols=73 Identities=23% Similarity=0.336 Sum_probs=46.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc----ccc--c-----------------------cc--chH
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----TSK--W-----------------------FG--EGE 1029 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL----~s~--~-----------------------~G--e~E 1029 (1163)
..-++|.|++|+|||+++..++..+ |...+.++..+- ... . .+ ..+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 103 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEKR 103 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHHH
Confidence 3569999999999999987665544 566666654320 000 0 00 113
Q ss_pred HHHHHHHHHHhccCCeEEEEccccccc
Q 001076 1030 KYVKAVFSLASKIAPSVVFVDEVDSML 1056 (1163)
Q Consensus 1030 ~~Ir~lF~~A~k~~PsILfIDEID~L~ 1056 (1163)
..+..+...+....|.+++|||+-.++
T Consensus 104 ~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 104 KFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 345555666666678999999998764
No 335
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.67 E-value=0.016 Score=69.10 Aligned_cols=121 Identities=18% Similarity=0.209 Sum_probs=70.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchH
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 1065 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~ 1065 (1163)
-++|+||.++|||++++.+.+.+.-.++.++..++......- ...-..+..++......||||||+.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v---------- 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV---------- 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc----------
Confidence 689999999999999988888875556666555543322211 12222333333335579999999866
Q ss_pred HHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCC--CCCCCHHHHhccCcEEEecCCCHHHHHH
Q 001076 1066 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR--PFDLDEAVVRRLPRRLMVNLPDAPNREK 1126 (1163)
Q Consensus 1066 eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~--p~~Ld~aLlrRFd~vI~I~~Pd~eeR~e 1126 (1163)
..+...+-...|... .+|++.+++.. ...+.+.+..|. ..+.+.+.+..+...
T Consensus 107 ---~~W~~~lk~l~d~~~----~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 107 ---PDWERALKYLYDRGN----LDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred ---hhHHHHHHHHHcccc----ceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 122222223333321 13444444322 233345566685 678888888888865
No 336
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.63 E-value=0.004 Score=62.10 Aligned_cols=32 Identities=53% Similarity=0.832 Sum_probs=26.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 001076 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1020 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL 1020 (1163)
|++.||||+|||++|+.++..++..+ ++...+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~--i~~D~~ 33 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVV--ISQDEI 33 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEE--EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE--EeHHHH
Confidence 78999999999999999999999444 444443
No 337
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.61 E-value=0.0056 Score=65.76 Aligned_cols=98 Identities=20% Similarity=0.284 Sum_probs=50.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc----ccccchHHHHHHHHHHHh---------ccCCeEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----KWFGEGEKYVKAVFSLAS---------KIAPSVVF 1048 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s----~~~Ge~E~~Ir~lF~~A~---------k~~PsILf 1048 (1163)
+-++|.|+||||||++++.++..+ +..++.+....-.. ...+.....+..++.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 357899999999999999887665 66776665433110 001111112222221111 12347999
Q ss_pred EccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCC
Q 001076 1049 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1098 (1163)
Q Consensus 1049 IDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~ 1098 (1163)
|||+..+- ...+..++..... .+.++++++-.+.
T Consensus 99 VDEasmv~------------~~~~~~ll~~~~~----~~~klilvGD~~Q 132 (196)
T PF13604_consen 99 VDEASMVD------------SRQLARLLRLAKK----SGAKLILVGDPNQ 132 (196)
T ss_dssp ESSGGG-B------------HHHHHHHHHHS-T-----T-EEEEEE-TTS
T ss_pred EecccccC------------HHHHHHHHHHHHh----cCCEEEEECCcch
Confidence 99997552 2233344444332 2356788887665
No 338
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.61 E-value=0.0042 Score=66.78 Aligned_cols=68 Identities=21% Similarity=0.327 Sum_probs=43.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC----cEEEEecc-cccc---------ccccchHHHHHHHHHHHhccCCeEEEEcc
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGA----NFINISMS-SITS---------KWFGEGEKYVKAVFSLASKIAPSVVFVDE 1051 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~----pfi~Id~s-eL~s---------~~~Ge~E~~Ir~lF~~A~k~~PsILfIDE 1051 (1163)
-++|.||+|+|||+++.+++..+.. .++.+..+ ++.. ..++.....+...+..+.+..|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3899999999999999999888742 23333211 1110 01122223345566677778899999999
Q ss_pred cc
Q 001076 1052 VD 1053 (1163)
Q Consensus 1052 ID 1053 (1163)
+-
T Consensus 83 ir 84 (198)
T cd01131 83 MR 84 (198)
T ss_pred CC
Confidence 83
No 339
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.60 E-value=0.015 Score=62.91 Aligned_cols=34 Identities=38% Similarity=0.616 Sum_probs=28.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~s 1018 (1163)
.-++|+|+||+|||+++..+|.+. +.+++.++..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 458999999999999999998765 5677777653
No 340
>PRK13695 putative NTPase; Provisional
Probab=96.59 E-value=0.012 Score=61.55 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001076 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eL 1008 (1163)
.++|.|++|+|||+|++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999988775
No 341
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.55 E-value=0.036 Score=66.81 Aligned_cols=71 Identities=23% Similarity=0.312 Sum_probs=45.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc---------------cccc-----chHHHHHHHHHHH
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS---------------KWFG-----EGEKYVKAVFSLA 1039 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s---------------~~~G-----e~E~~Ir~lF~~A 1039 (1163)
++..++|+|++|+|||+++..+|..+ |..+..+++..+.. ..++ .+...+......+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 45679999999999999999998877 56666565543211 0111 1122234444444
Q ss_pred hccCCeEEEEcccccc
Q 001076 1040 SKIAPSVVFVDEVDSM 1055 (1163)
Q Consensus 1040 ~k~~PsILfIDEID~L 1055 (1163)
... .+|+||...++
T Consensus 174 ~~~--DvVIIDTAGr~ 187 (437)
T PRK00771 174 KKA--DVIIVDTAGRH 187 (437)
T ss_pred hcC--CEEEEECCCcc
Confidence 443 79999998755
No 342
>PRK13947 shikimate kinase; Provisional
Probab=96.54 E-value=0.0022 Score=66.29 Aligned_cols=31 Identities=45% Similarity=0.602 Sum_probs=29.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
+|+|.|+||+|||++|+.||+.++++|+..|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999999998766
No 343
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.51 E-value=0.0071 Score=79.20 Aligned_cols=135 Identities=20% Similarity=0.267 Sum_probs=84.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc------cccccccchHH---HHHHHHHHHhccCCeEEEEcccccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ITSKWFGEGEK---YVKAVFSLASKIAPSVVFVDEVDSM 1055 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~se------L~s~~~Ge~E~---~Ir~lF~~A~k~~PsILfIDEID~L 1055 (1163)
.++||.||+.+|||.+..++|++.|-.|++|+--+ ..+.|+....+ .-.++.-+|.+.. --|++||+.--
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA 967 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA 967 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC
Confidence 46999999999999999999999999999998543 23333322211 1122344444432 46899999722
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHhcCC--c-----ccCCCCEEEEEEeCCCC------CCCHHHHhccCcEEEecCCCHH
Q 001076 1056 LGRRENPGEHEAMRKMKNEFMVNWDGL--R-----TKDKERVLVLAATNRPF------DLDEAVVRRLPRRLMVNLPDAP 1122 (1163)
Q Consensus 1056 ~g~r~s~~~~eal~~il~~LL~~Ldgl--~-----~k~~~~VlVIaTTN~p~------~Ld~aLlrRFd~vI~I~~Pd~e 1122 (1163)
.....++ +|.|+..-+.+ + ..++.++++.||-|+|. -|..+|++|| ..++|.--..+
T Consensus 968 -----pTDVLEa----LNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFddiped 1037 (4600)
T COG5271 968 -----PTDVLEA----LNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFDDIPED 1037 (4600)
T ss_pred -----cHHHHHH----HHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-HhhhcccCcHH
Confidence 1122233 33333221111 1 12456788888889874 5778999999 45666555566
Q ss_pred HHHHHHHH
Q 001076 1123 NREKIIRV 1130 (1163)
Q Consensus 1123 eR~eILk~ 1130 (1163)
+...|++.
T Consensus 1038 Ele~ILh~ 1045 (4600)
T COG5271 1038 ELEEILHG 1045 (4600)
T ss_pred HHHHHHhc
Confidence 66666654
No 344
>PRK03839 putative kinase; Provisional
Probab=96.51 E-value=0.0022 Score=67.23 Aligned_cols=31 Identities=32% Similarity=0.651 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
.|+|.|+||+|||++++.||+.++++|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999998765
No 345
>CHL00181 cbbX CbbX; Provisional
Probab=96.50 E-value=0.0043 Score=70.66 Aligned_cols=178 Identities=15% Similarity=0.112 Sum_probs=94.1
Q ss_pred eeecCCCCCCCCCCCCCC-----------CCCCcccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchh
Q 001076 646 VRFDRSIPEGNNLGGFCE-----------DDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIE 714 (1163)
Q Consensus 646 V~Fd~~~~~~~~l~~~c~-----------~~~~ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid 714 (1163)
|.|-+|+|+|++..+.+- .++-++++..++ .++|.++.....+.+++ ++ .+-||||||++
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l---~~~~~g~~~~~~~~~l~----~a--~ggVLfIDE~~ 132 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL---VGQYIGHTAPKTKEVLK----KA--MGGVLFIDEAY 132 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH---HHHHhccchHHHHHHHH----Hc--cCCEEEEEccc
Confidence 778889999998763221 111011111111 13455544333333322 23 34699999999
Q ss_pred hhhcC------ChhhHHHHHHHHhcCCCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCccccccccc
Q 001076 715 KSLTG------NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSK 788 (1163)
Q Consensus 715 ~~La~------~~~~~~~i~s~L~~L~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~ 788 (1163)
.+... ..+....|...|+..+++++||++...... ..+++.
T Consensus 133 ~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~-------------------~~~~~~-------------- 179 (287)
T CHL00181 133 YLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRM-------------------DKFYES-------------- 179 (287)
T ss_pred hhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHH-------------------HHHHhc--------------
Confidence 84322 123333444444544678999988762110 111111
Q ss_pred cchHHHHHhhhccccceeecCCchhHHHHHHHHHHHH---hhhhhhccchhhHHHhhhhcCCCCcccccchhhcccCCc-
Q 001076 789 ETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLER---DVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLT- 864 (1163)
Q Consensus 789 ~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~---~LpdlkgR~~Il~IHT~l~~~~L~~vdLeeLa~~tkg~s- 864 (1163)
...+.++|+..|.++++..+.+..-|.+.+.. .+... +...+..+ .. .. .....|+
T Consensus 180 -----np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~-~~~~L~~~---i~----------~~-~~~~~~GN 239 (287)
T CHL00181 180 -----NPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPE-AEKALLDY---IK----------KR-MEQPLFAN 239 (287)
T ss_pred -----CHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChh-HHHHHHHH---HH----------Hh-CCCCCCcc
Confidence 13477889999999999888887755544332 22211 11111111 00 00 0123455
Q ss_pred hhhhhhHHhHHhhhhhhhcCC
Q 001076 865 TEGVEKIVGWALSHHFMHCSE 885 (1163)
Q Consensus 865 gadIe~Lv~~Aas~Al~r~~~ 885 (1163)
+-+++.++..|....-+|...
T Consensus 240 aR~vrn~ve~~~~~~~~r~~~ 260 (287)
T CHL00181 240 ARSVRNALDRARMRQANRIFE 260 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 678999998888877776543
No 346
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.47 E-value=0.013 Score=59.06 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=39.0
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
++.|+.-+.+.+...+...+..+ . .+.+--+-|+|++|||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~------~-p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP------N-PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC------C-CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 46799988888888887644321 1 1222346799999999999999999986
No 347
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.45 E-value=0.016 Score=67.52 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=44.8
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~se 1019 (1163)
.+.+.+.++..|..++-. .. ..-|..|.|+|..|||||++.+++.+.++.+.+.+++-+
T Consensus 7 ~v~~Re~qi~~L~~Llg~---------~~--~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~e 65 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGN---------NS--CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVE 65 (438)
T ss_pred CccchHHHHHHHHHHhCC---------CC--cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHH
Confidence 445667777777776621 11 123356799999999999999999999999999888755
No 348
>PRK08233 hypothetical protein; Provisional
Probab=96.42 E-value=0.027 Score=58.58 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=26.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CcEEEEec
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG-ANFINISM 1017 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg-~pfi~Id~ 1017 (1163)
.-|.|.|+||+|||++|+.|+..++ ..++.+|.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 3478899999999999999999985 55555553
No 349
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.41 E-value=0.025 Score=61.54 Aligned_cols=123 Identities=19% Similarity=0.299 Sum_probs=68.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccc-----------------------------ccc----ccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSIT-----------------------------SKW----FGE 1027 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL----g~pfi~Id~seL~-----------------------------s~~----~Ge 1027 (1163)
.-+|+.||||+|||.|+..++... |-+++.+...+-. ... ...
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~~~~ 99 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWSPND 99 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-TSCC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccccccC
Confidence 569999999999999999876433 7777777653300 000 112
Q ss_pred hHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCC----CCCCC
Q 001076 1028 GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR----PFDLD 1103 (1163)
Q Consensus 1028 ~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~----p~~Ld 1103 (1163)
.+..+..+...+....+.+++||.+..+. ....+ ...+..+..+...+.. ..+.+|.|... .....
T Consensus 100 ~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~~~~---~~~r~~l~~l~~~l~~------~~~t~llt~~~~~~~~~~~~ 169 (226)
T PF06745_consen 100 LEELLSKIREAIEELKPDRVVIDSLSALL-LYDDP---EELRRFLRALIKFLKS------RGVTTLLTSEMPSGSEDDGT 169 (226)
T ss_dssp HHHHHHHHHHHHHHHTSSEEEEETHHHHT-TSSSG---GGHHHHHHHHHHHHHH------TTEEEEEEEEESSSSSSSSS
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECHHHHh-hcCCH---HHHHHHHHHHHHHHHH------CCCEEEEEEccccCcccccc
Confidence 33445556666667788999999999883 22221 2234445555555432 23444554432 12223
Q ss_pred HHHHh-ccCcEEEec
Q 001076 1104 EAVVR-RLPRRLMVN 1117 (1163)
Q Consensus 1104 ~aLlr-RFd~vI~I~ 1117 (1163)
..+.. -+|-+|.+.
T Consensus 170 ~~i~~~l~D~vI~L~ 184 (226)
T PF06745_consen 170 FGIEHYLADGVIELR 184 (226)
T ss_dssp TSHHHHHSSEEEEEE
T ss_pred cchhhhcccEEEEEE
Confidence 33333 456566554
No 350
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.39 E-value=0.0031 Score=63.70 Aligned_cols=31 Identities=32% Similarity=0.634 Sum_probs=28.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
+|+|+|+||+|||++|+.+|..++++++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999988665
No 351
>PHA02774 E1; Provisional
Probab=96.38 E-value=0.019 Score=70.46 Aligned_cols=130 Identities=15% Similarity=0.276 Sum_probs=75.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE-EeccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN-ISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG 1063 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~-Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~ 1063 (1163)
..++|+||||||||++|.+|++.++..++. ++.... .| +..+.. -.|++|||+-.-
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~--Fw-----------Lqpl~d--~ki~vlDD~t~~-------- 491 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSH--FW-----------LQPLAD--AKIALLDDATHP-------- 491 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECccc--cc-----------cchhcc--CCEEEEecCcch--------
Confidence 479999999999999999999999655544 553211 11 122222 259999999210
Q ss_pred hHHHHHHHHHHHHHHhcCCcc----cCC-----CCEEEEEEeCCCCCCCH---HHHhccCcEEEecC-------------
Q 001076 1064 EHEAMRKMKNEFMVNWDGLRT----KDK-----ERVLVLAATNRPFDLDE---AVVRRLPRRLMVNL------------- 1118 (1163)
Q Consensus 1064 ~~eal~~il~~LL~~Ldgl~~----k~~-----~~VlVIaTTN~p~~Ld~---aLlrRFd~vI~I~~------------- 1118 (1163)
....+ -..|...++|-.. +-. ..--+|.|||..-.-++ .|.+|+ ..+.|+.
T Consensus 492 ~w~y~---d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi-~~f~F~n~~P~d~~G~P~f~ 567 (613)
T PHA02774 492 CWDYI---DTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRI-TVFEFPNPFPLDENGNPVFE 567 (613)
T ss_pred HHHHH---HHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhE-EEEECCCCCCcCCCCCEeee
Confidence 11111 1234455565421 000 12345678885433333 444565 3444432
Q ss_pred CCHHHHHHHHHHHHhhCCCCChh
Q 001076 1119 PDAPNREKIIRVILAKEELASDV 1141 (1163)
Q Consensus 1119 Pd~eeR~eILk~ll~k~~l~~dv 1141 (1163)
.+......+|+++.....+.++.
T Consensus 568 ltd~~WKsFF~rlw~~LdL~d~e 590 (613)
T PHA02774 568 LTDANWKSFFERLWSQLDLSDQE 590 (613)
T ss_pred eCchhHHHHHHHHHHHcCCCCcc
Confidence 24667889999998887776443
No 352
>PRK00625 shikimate kinase; Provisional
Probab=96.38 E-value=0.0032 Score=66.59 Aligned_cols=31 Identities=35% Similarity=0.491 Sum_probs=29.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
.|+|+|.||+|||++++.+|+.++++|+.+|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998876
No 353
>PRK14974 cell division protein FtsY; Provisional
Probab=96.33 E-value=0.032 Score=65.03 Aligned_cols=72 Identities=21% Similarity=0.234 Sum_probs=44.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc----------cccc----------chHHHHHHHHHHHh
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------KWFG----------EGEKYVKAVFSLAS 1040 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s----------~~~G----------e~E~~Ir~lF~~A~ 1040 (1163)
+.-++|+|++|+|||+++..+|..+ +..+..+++..+.. ...| .+...+......++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~ 219 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAK 219 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHH
Confidence 4569999999999999888888766 55665555432110 0001 11122333444444
Q ss_pred ccCCeEEEEcccccc
Q 001076 1041 KIAPSVVFVDEVDSM 1055 (1163)
Q Consensus 1041 k~~PsILfIDEID~L 1055 (1163)
.....+|+||...++
T Consensus 220 ~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 220 ARGIDVVLIDTAGRM 234 (336)
T ss_pred hCCCCEEEEECCCcc
Confidence 455679999999765
No 354
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.33 E-value=0.02 Score=62.88 Aligned_cols=71 Identities=25% Similarity=0.365 Sum_probs=46.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--C------CcEEEEecc-ccccccccch-------------HHHHHHHHHHHhcc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA--G------ANFINISMS-SITSKWFGEG-------------EKYVKAVFSLASKI 1042 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL--g------~pfi~Id~s-eL~s~~~Ge~-------------E~~Ir~lF~~A~k~ 1042 (1163)
.+.||.||||+|||+|.+-||+-+ | ..+..+|-. ++.+-..|-+ +-.-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 468999999999999999999877 2 234445532 2322222211 11223355667788
Q ss_pred CCeEEEEcccccc
Q 001076 1043 APSVVFVDEVDSM 1055 (1163)
Q Consensus 1043 ~PsILfIDEID~L 1055 (1163)
.|-||++|||...
T Consensus 218 ~PEViIvDEIGt~ 230 (308)
T COG3854 218 SPEVIIVDEIGTE 230 (308)
T ss_pred CCcEEEEeccccH
Confidence 9999999999744
No 355
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.31 E-value=0.0068 Score=68.87 Aligned_cols=131 Identities=16% Similarity=0.099 Sum_probs=73.6
Q ss_pred eeeeecCCCCCCCCCCC------CCCCCC---C-c-ccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcc
Q 001076 644 IGVRFDRSIPEGNNLGG------FCEDDH---G-F-FCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKD 712 (1163)
Q Consensus 644 vgV~Fd~~~~~~~~l~~------~c~~~~---~-f-f~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffdd 712 (1163)
.+|.|-+|+|+||+..+ .|..+. + | ++...++ .++|.+.....++.+|+.+ .+-+|||||
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l---~~~~~g~~~~~~~~~~~~a------~~gvL~iDE 129 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL---VGQYIGHTAPKTKEILKRA------MGGVLFIDE 129 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH---hHhhcccchHHHHHHHHHc------cCcEEEEec
Confidence 46889999999999752 222221 1 2 2222222 2456666655555555433 347999999
Q ss_pred hhhhhcC--C----hhhHHHHHHHHhcCCCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCccccccc
Q 001076 713 IEKSLTG--N----NDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDR 786 (1163)
Q Consensus 713 id~~La~--~----~~~~~~i~s~L~~L~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r 786 (1163)
++.+... . .+.-..|...|+.-+++++||+++.... ++. +-
T Consensus 130 i~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~-----------------------~~~-----~~----- 176 (284)
T TIGR02880 130 AYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDR-----------------------MDS-----FF----- 176 (284)
T ss_pred hhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHH-----------------------HHH-----HH-----
Confidence 9983222 1 2222334444444467899998876210 000 00
Q ss_pred cccchHHHHHhhhccccceeecCCchhHHHHHHHH
Q 001076 787 SKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQ 821 (1163)
Q Consensus 787 ~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRfer 821 (1163)
.....+.++|+..|.++.+.++.+..-|+.
T Consensus 177 -----~~np~L~sR~~~~i~fp~l~~edl~~I~~~ 206 (284)
T TIGR02880 177 -----ESNPGFSSRVAHHVDFPDYSEAELLVIAGL 206 (284)
T ss_pred -----hhCHHHHhhCCcEEEeCCcCHHHHHHHHHH
Confidence 001346677888888888887777654443
No 356
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.30 E-value=0.008 Score=70.93 Aligned_cols=72 Identities=22% Similarity=0.376 Sum_probs=43.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC---cE--EEEeccc----------------cccccccchHHHHH---HHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGA---NF--INISMSS----------------ITSKWFGEGEKYVK---AVFSLAS 1040 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~---pf--i~Id~se----------------L~s~~~Ge~E~~Ir---~lF~~A~ 1040 (1163)
...||+||+|+|||+|++.|++.... .+ +.+...+ +.+.+-..++..++ .++..|.
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae 249 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK 249 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 35899999999999999999987732 22 2221111 11222223333333 2344443
Q ss_pred c----cCCeEEEEccccccc
Q 001076 1041 K----IAPSVVFVDEVDSML 1056 (1163)
Q Consensus 1041 k----~~PsILfIDEID~L~ 1056 (1163)
+ ....+||||||++|.
T Consensus 250 ~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 250 RLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHcCCCEEEEEEChHHHH
Confidence 3 256799999999986
No 357
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.28 E-value=0.043 Score=60.16 Aligned_cols=72 Identities=19% Similarity=0.324 Sum_probs=46.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc--------------cc-------------------ccch
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS--------------KW-------------------FGEG 1028 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s--------------~~-------------------~Ge~ 1028 (1163)
.-++++|+||+|||+|+.+++.+. |.+++.++..+-.. .+ ....
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~ 105 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWNSTLA 105 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccCcchH
Confidence 568999999999999999997653 66776666533100 00 0011
Q ss_pred HHHHHHHHHHHhccCCeEEEEccccccc
Q 001076 1029 EKYVKAVFSLASKIAPSVVFVDEVDSML 1056 (1163)
Q Consensus 1029 E~~Ir~lF~~A~k~~PsILfIDEID~L~ 1056 (1163)
+..+..+........+.+|+||++..+.
T Consensus 106 ~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 106 NKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 2233334444455688999999998663
No 358
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.28 E-value=0.0087 Score=71.16 Aligned_cols=59 Identities=24% Similarity=0.338 Sum_probs=37.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcccccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL----g~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L 1055 (1163)
.++++.||+|||||+||.+++... | -.+..+.|+... .. +.+.. -....+|+|||+..+
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L----~~---~~lg~--v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNI----ST---RQIGL--VGRWDVVAFDEVATL 272 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHH----HH---HHHhh--hccCCEEEEEcCCCC
Confidence 589999999999999999987762 4 222233333221 11 11111 123579999999876
No 359
>PRK10536 hypothetical protein; Provisional
Probab=96.27 E-value=0.022 Score=63.97 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 001076 986 GILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~e 1007 (1163)
-++++||+|||||+||.+++.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999885
No 360
>PRK13948 shikimate kinase; Provisional
Probab=96.26 E-value=0.0046 Score=65.95 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=32.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 981 ~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
..++..|+|.|.+|+|||++++.+|+.++.+|+..|
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 446678999999999999999999999999999766
No 361
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.24 E-value=0.0054 Score=68.56 Aligned_cols=95 Identities=21% Similarity=0.383 Sum_probs=58.1
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-cccccc
Q 001076 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINIS-MSSITS 1022 (1163)
Q Consensus 947 tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg---~pfi~Id-~seL~s 1022 (1163)
++++++-.....+.+.+++.... +....+|+.|++|+|||+++++++..+. ..++.+. ..++.-
T Consensus 102 sle~l~~~~~~~~~~~~~l~~~v------------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l 169 (270)
T PF00437_consen 102 SLEDLGESGSIPEEIAEFLRSAV------------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRL 169 (270)
T ss_dssp CHCCCCHTHHCHHHHHHHHHHCH------------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--
T ss_pred cHhhccCchhhHHHHHHHHhhcc------------ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceee
Confidence 55566555555555655554311 1125799999999999999999998883 3444443 222211
Q ss_pred c------ccc-chHHHHHHHHHHHhccCCeEEEEcccc
Q 001076 1023 K------WFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1163)
Q Consensus 1023 ~------~~G-e~E~~Ir~lF~~A~k~~PsILfIDEID 1053 (1163)
. ... ........++..+.+..|.+|+|.||-
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 170 PGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred cccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 0 011 123356677888889999999999995
No 362
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.23 E-value=0.035 Score=60.75 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=28.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 1018 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL----g~pfi~Id~s 1018 (1163)
+..-++|.|+||+|||+++..++... +.+++.+++.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 43568999999999999998886554 7788777753
No 363
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.23 E-value=0.025 Score=68.53 Aligned_cols=75 Identities=21% Similarity=0.325 Sum_probs=50.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc------cccc--------hHHHHHHHHHHHhccCCe
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFGE--------GEKYVKAVFSLASKIAPS 1045 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~------~~Ge--------~E~~Ir~lF~~A~k~~Ps 1045 (1163)
+..-+||.|+||+|||+|+..++..+ +.++++++..+-... .+|. .+..+..+...+.+..|.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~~ 172 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENPQ 172 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCCc
Confidence 33458999999999999999987765 456777776432111 0110 112344555666777899
Q ss_pred EEEEcccccccc
Q 001076 1046 VVFVDEVDSMLG 1057 (1163)
Q Consensus 1046 ILfIDEID~L~g 1057 (1163)
+|+||.|..+..
T Consensus 173 ~vVIDSIq~l~~ 184 (454)
T TIGR00416 173 ACVIDSIQTLYS 184 (454)
T ss_pred EEEEecchhhcc
Confidence 999999998863
No 364
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.23 E-value=0.024 Score=59.83 Aligned_cols=71 Identities=21% Similarity=0.297 Sum_probs=46.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc----------------c-ccchHHHHHHHHHHHhccCCeEEEE
Q 001076 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK----------------W-FGEGEKYVKAVFSLASKIAPSVVFV 1049 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~----------------~-~Ge~E~~Ir~lF~~A~k~~PsILfI 1049 (1163)
+|+.|++|+|||++|..++...+.+++++....-.+. | ..+....+...+.... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 6899999999999999999888778877765432211 0 0111223333332221 4679999
Q ss_pred ccccccccCC
Q 001076 1050 DEVDSMLGRR 1059 (1163)
Q Consensus 1050 DEID~L~g~r 1059 (1163)
|-+..|...-
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9999887543
No 365
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.22 E-value=0.024 Score=59.87 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=46.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHH--------------------HHHHHHHHHhccCCe
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEK--------------------YVKAVFSLASKIAPS 1045 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~Ge~E~--------------------~Ir~lF~~A~k~~Ps 1045 (1163)
.+|+.|+||+|||++|..++..++.+++.+........ +..+ .+..++... ...+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence 58999999999999999999998888777665432211 1111 233333221 23467
Q ss_pred EEEEcccccccc
Q 001076 1046 VVFVDEVDSMLG 1057 (1163)
Q Consensus 1046 ILfIDEID~L~g 1057 (1163)
+|+||-+..|..
T Consensus 79 ~VlID~Lt~~~~ 90 (170)
T PRK05800 79 CVLVDCLTTWVT 90 (170)
T ss_pred EEEehhHHHHHH
Confidence 899999998864
No 366
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.20 E-value=0.012 Score=66.61 Aligned_cols=69 Identities=26% Similarity=0.387 Sum_probs=43.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC----------cEEEEe-cccccccc-------ccc------hHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGA----------NFINIS-MSSITSKW-------FGE------GEKYVKAVFSLAS 1040 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~----------pfi~Id-~seL~s~~-------~Ge------~E~~Ir~lF~~A~ 1040 (1163)
.+++|.||+|+|||+|.++++..+.. .+..++ ..++...+ ++. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999988732 222222 11211110 010 0112334666777
Q ss_pred ccCCeEEEEcccc
Q 001076 1041 KIAPSVVFVDEVD 1053 (1163)
Q Consensus 1041 k~~PsILfIDEID 1053 (1163)
.+.|.||++||+.
T Consensus 192 ~~~P~villDE~~ 204 (270)
T TIGR02858 192 SMSPDVIVVDEIG 204 (270)
T ss_pred hCCCCEEEEeCCC
Confidence 7899999999974
No 367
>PRK06217 hypothetical protein; Validated
Probab=96.18 E-value=0.0047 Score=65.23 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=29.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
..|+|.|.+|+|||++|++|++.++++++..|
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 35999999999999999999999999987766
No 368
>PRK14532 adenylate kinase; Provisional
Probab=96.17 E-value=0.0046 Score=65.27 Aligned_cols=30 Identities=37% Similarity=0.671 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
.|+|.||||+|||++|+.||+.+|++++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 589999999999999999999999877654
No 369
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.16 E-value=0.039 Score=61.82 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGA 1010 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~ 1010 (1163)
..++|+||+|+|||+|++.+++.+..
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 56999999999999999999988743
No 370
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.15 E-value=0.032 Score=60.18 Aligned_cols=69 Identities=26% Similarity=0.441 Sum_probs=41.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH-----hCCcEE-------------EEeccc-cccc--cccchHHHHHHHHHHHhccC
Q 001076 985 KGILLFGPPGTGKTMLAKAVATE-----AGANFI-------------NISMSS-ITSK--WFGEGEKYVKAVFSLASKIA 1043 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~e-----Lg~pfi-------------~Id~se-L~s~--~~Ge~E~~Ir~lF~~A~k~~ 1043 (1163)
+-++|.||.|+|||+|.+.|+.. .|.++- .+...+ +... .+......+..++..+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 46899999999999999999743 354321 111111 0000 01111134566666665558
Q ss_pred CeEEEEcccc
Q 001076 1044 PSVVFVDEVD 1053 (1163)
Q Consensus 1044 PsILfIDEID 1053 (1163)
|.+|++||.-
T Consensus 106 p~llllDEp~ 115 (199)
T cd03283 106 PVLFLLDEIF 115 (199)
T ss_pred CeEEEEeccc
Confidence 9999999974
No 371
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.15 E-value=0.0041 Score=64.12 Aligned_cols=32 Identities=47% Similarity=0.801 Sum_probs=29.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
++||++|-||||||+++..||...+++++.+.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 48999999999999999999999999998764
No 372
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.15 E-value=0.041 Score=60.69 Aligned_cols=39 Identities=28% Similarity=0.500 Sum_probs=28.0
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001076 978 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1163)
Q Consensus 978 ~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~ 1017 (1163)
+++. +...+|++||||+|||.||..++.+. |-+.+.+..
T Consensus 16 GG~~-~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 16 GGIP-ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CCCc-CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 4533 44679999999999999998876542 556655553
No 373
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.15 E-value=0.11 Score=57.82 Aligned_cols=131 Identities=11% Similarity=0.065 Sum_probs=88.9
Q ss_pred ceEEEEcCCC-ChHHHHHHHHHHHhCC---------cEEEEeccccc---cccccchHHHHHHHHHHHhc----cCCeEE
Q 001076 985 KGILLFGPPG-TGKTMLAKAVATEAGA---------NFINISMSSIT---SKWFGEGEKYVKAVFSLASK----IAPSVV 1047 (1163)
Q Consensus 985 kgVLL~GPPG-TGKT~LArALA~eLg~---------pfi~Id~seL~---s~~~Ge~E~~Ir~lF~~A~k----~~PsIL 1047 (1163)
...||.|..+ +||..++.-+++.+-. .++.+....-. +..+ .-..+|.+-..+.. ...-|+
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I--~IdqIReL~~~l~~~p~~g~~KVi 93 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNI--SIEQIRKLQDFLSKTSAISGYKVA 93 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcc--cHHHHHHHHHHHhhCcccCCcEEE
Confidence 5699999998 9999999888877732 22323211000 0111 22345555554443 345699
Q ss_pred EEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHH
Q 001076 1048 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKI 1127 (1163)
Q Consensus 1048 fIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eI 1127 (1163)
+|+++|.|- ....|.||..++. ++.++++|..|..+..+.+.+++|+ ..+.++.|....-.++
T Consensus 94 II~~ae~mt------------~~AANALLKtLEE----PP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e~ 156 (263)
T PRK06581 94 IIYSAELMN------------LNAANSCLKILED----APKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNEL 156 (263)
T ss_pred EEechHHhC------------HHHHHHHHHhhcC----CCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHHH
Confidence 999999883 2344666666655 3467888888889999999999999 7899999998777777
Q ss_pred HHHHHhh
Q 001076 1128 IRVILAK 1134 (1163)
Q Consensus 1128 Lk~ll~k 1134 (1163)
...++..
T Consensus 157 ~~~~~~p 163 (263)
T PRK06581 157 YSQFIQP 163 (263)
T ss_pred HHHhccc
Confidence 7666654
No 374
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.15 E-value=0.0046 Score=64.69 Aligned_cols=29 Identities=21% Similarity=0.519 Sum_probs=25.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 987 ILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
|+|+|+||+|||++|+.||+.+++.++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999998765543
No 375
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.14 E-value=0.096 Score=58.44 Aligned_cols=133 Identities=16% Similarity=0.240 Sum_probs=76.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecccccccc--------c-c-----chHHHH-------HHHHHHH
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKW--------F-G-----EGEKYV-------KAVFSLA 1039 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eLg--~pfi~Id~seL~s~~--------~-G-----e~E~~I-------r~lF~~A 1039 (1163)
.+-++++.|++|+|||+|+..|...+. +..+.+-++.....+ + . +.+..+ .+.....
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 345799999999999999999987773 333333333211111 0 0 111111 1111111
Q ss_pred hc---cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEe
Q 001076 1040 SK---IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMV 1116 (1163)
Q Consensus 1040 ~k---~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I 1116 (1163)
.. .++.+|+||++..- ..-...+..++.. | ..-++-+|..+.....+++.++.-.+.++.+
T Consensus 92 ~~~k~~~~~LiIlDD~~~~----------~~k~~~l~~~~~~--g----RH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~ 155 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGDK----------KLKSKILRQFFNN--G----RHYNISIIFLSQSYFHLPPNIRSNIDYFIIF 155 (241)
T ss_pred cccCCCCCeEEEEeCCCCc----------hhhhHHHHHHHhc--c----cccceEEEEEeeecccCCHHHhhcceEEEEe
Confidence 11 23689999998421 0112223333322 1 3356888999988899999988777767766
Q ss_pred cCCCHHHHHHHHHHHH
Q 001076 1117 NLPDAPNREKIIRVIL 1132 (1163)
Q Consensus 1117 ~~Pd~eeR~eILk~ll 1132 (1163)
+ -+..+...|++.+.
T Consensus 156 ~-~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 156 N-NSKRDLENIYRNMN 170 (241)
T ss_pred c-CcHHHHHHHHHhcc
Confidence 5 46666666666553
No 376
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.12 E-value=0.032 Score=60.40 Aligned_cols=35 Identities=34% Similarity=0.505 Sum_probs=27.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---C------CcEEEEeccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---G------ANFINISMSS 1019 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g------~pfi~Id~se 1019 (1163)
.-+.|+||||+|||+|+..+|... + ..++.++...
T Consensus 20 ~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred cEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 458999999999999999997654 3 5667777644
No 377
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.11 E-value=0.015 Score=68.55 Aligned_cols=108 Identities=23% Similarity=0.315 Sum_probs=57.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----C-CcEEEEeccccc----------cccccch------HHHHHHHHHHHhccC
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA----G-ANFINISMSSIT----------SKWFGEG------EKYVKAVFSLASKIA 1043 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL----g-~pfi~Id~seL~----------s~~~Ge~------E~~Ir~lF~~A~k~~ 1043 (1163)
..++|.||+|+|||+++..||..+ | ..+..+....+. ....|-+ ...+.... .+...
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l--~~l~~ 215 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL--AELRN 215 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH--HHhcC
Confidence 568999999999999999998764 3 234334332221 0011110 11112222 22234
Q ss_pred CeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHH
Q 001076 1044 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAV 1106 (1163)
Q Consensus 1044 PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aL 1106 (1163)
..+|+||.....- . ...+.+.+..+..... ....++||.+|+..+.+...+
T Consensus 216 ~DlVLIDTaG~~~------~-----d~~l~e~La~L~~~~~-~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 216 KHMVLIDTIGMSQ------R-----DRTVSDQIAMLHGADT-PVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred CCEEEEcCCCCCc------c-----cHHHHHHHHHHhccCC-CCeEEEEecCccChHHHHHHH
Confidence 5899999996331 1 1112223333333221 225688888888777666443
No 378
>PRK06762 hypothetical protein; Provisional
Probab=96.10 E-value=0.014 Score=60.18 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=30.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~ 1021 (1163)
.-|+|+|+||+|||++|+.+++.++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 4589999999999999999999997666666654443
No 379
>PHA02624 large T antigen; Provisional
Probab=96.09 E-value=0.03 Score=69.18 Aligned_cols=119 Identities=21% Similarity=0.293 Sum_probs=66.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcccccccc-CCCCcc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLG-RRENPG 1063 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g-~r~s~~ 1063 (1163)
+.+||+||||||||+++.+|++.++-..+.++++.-.+. |...--..-.+.+||++-.-.- ...-+.
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~ 499 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNKDLPS 499 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeeccccccccccCCc
Confidence 469999999999999999999999666777886652211 1111111224778888742110 000000
Q ss_pred hHHHHHHHHHHHHHHhcCC-cc----cCCCCE-----EEEEEeCCCCCCCHHHHhccCcEEEecC
Q 001076 1064 EHEAMRKMKNEFMVNWDGL-RT----KDKERV-----LVLAATNRPFDLDEAVVRRLPRRLMVNL 1118 (1163)
Q Consensus 1064 ~~eal~~il~~LL~~Ldgl-~~----k~~~~V-----lVIaTTN~p~~Ld~aLlrRFd~vI~I~~ 1118 (1163)
++ .+. =+..|...+||- .. +-..++ -+|.|+|. ..|+..+.-||-.++.|..
T Consensus 500 G~-~~d-Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 500 GQ-GMN-NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred cc-ccc-hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 00 000 012344555664 11 001111 23556665 5678888889988888854
No 380
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.09 E-value=0.049 Score=60.79 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=27.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 1017 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL----g~pfi~Id~ 1017 (1163)
+..-++|.|+||+|||+++.+++..+ |.+++.+++
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 33568999999999999999887654 667766665
No 381
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.08 E-value=0.035 Score=65.93 Aligned_cols=160 Identities=20% Similarity=0.217 Sum_probs=86.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-------CCc--EEEEecccc------------ccc--cccchHHHHHHHHHHHh
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA-------GAN--FINISMSSI------------TSK--WFGEGEKYVKAVFSLAS 1040 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL-------g~p--fi~Id~seL------------~s~--~~Ge~E~~Ir~lF~~A~ 1040 (1163)
+..++|+||+|+|||+++..+|..+ +.. ++.+|+-.. ++- ........+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 3569999999999999999888765 233 444554211 100 1111122233333332
Q ss_pred ccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccC----cEEEe
Q 001076 1041 KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP----RRLMV 1116 (1163)
Q Consensus 1041 k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd----~vI~I 1116 (1163)
....+|+||.+.++. ..... +.++...++.... +...++|+.+|.....+...+ .+|. ..+.+
T Consensus 253 -~~~DlVLIDTaGr~~------~~~~~----l~el~~~l~~~~~-~~e~~LVlsat~~~~~~~~~~-~~~~~~~~~~~I~ 319 (388)
T PRK12723 253 -KDFDLVLVDTIGKSP------KDFMK----LAEMKELLNACGR-DAEFHLAVSSTTKTSDVKEIF-HQFSPFSYKTVIF 319 (388)
T ss_pred -CCCCEEEEcCCCCCc------cCHHH----HHHHHHHHHhcCC-CCeEEEEEcCCCCHHHHHHHH-HHhcCCCCCEEEE
Confidence 345799999998662 11111 2333333332221 225678888887766666444 4331 35667
Q ss_pred cCCCHHHHHH-HHHHHHhh----------CCCCCh---hhHHHHHHHcCCCCHHH
Q 001076 1117 NLPDAPNREK-IIRVILAK----------EELASD---VDLEGIANMADGYSGSD 1157 (1163)
Q Consensus 1117 ~~Pd~eeR~e-ILk~ll~k----------~~l~~d---vdl~~LA~~TeGySgaD 1157 (1163)
...|...+.- ++...... ..+.+| .+...++++.-||+-.|
T Consensus 320 TKlDet~~~G~~l~~~~~~~~Pi~yit~Gq~vPeDl~~~~~~~~~~~l~g~~~~~ 374 (388)
T PRK12723 320 TKLDETTCVGNLISLIYEMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYRISD 374 (388)
T ss_pred EeccCCCcchHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHhcCCCccc
Confidence 7777655543 33333221 122222 34677888888887654
No 382
>PRK05973 replicative DNA helicase; Provisional
Probab=96.07 E-value=0.043 Score=61.06 Aligned_cols=37 Identities=38% Similarity=0.530 Sum_probs=28.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001076 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1163)
Q Consensus 982 ~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~s 1018 (1163)
.+..-+||.|+||+|||+++-.++... |.+++.+++.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 344568999999999999999887655 7777666643
No 383
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.06 E-value=0.0056 Score=61.17 Aligned_cols=30 Identities=33% Similarity=0.659 Sum_probs=28.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 987 ILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
|.|.|+||+|||++|+.||..++++++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998876
No 384
>PRK04040 adenylate kinase; Provisional
Probab=96.04 E-value=0.044 Score=58.70 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=26.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCcEEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA--GANFINI 1015 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL--g~pfi~I 1015 (1163)
.-|+|+|+||+|||++++.++..+ ++.++.+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~ 35 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNF 35 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEEec
Confidence 568999999999999999999999 6666433
No 385
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.04 E-value=0.023 Score=69.41 Aligned_cols=94 Identities=18% Similarity=0.267 Sum_probs=60.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec-ccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISM-SSI 1020 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg---~pfi~Id~-seL 1020 (1163)
..++++++-.++..+.+..++.. +..-+|++||+|+|||++..++.+++. ..++.+.- .++
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~---------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR---------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 35677887777777777776532 222379999999999999998887773 34554422 111
Q ss_pred c-----cccccc-hHHHHHHHHHHHhccCCeEEEEcccc
Q 001076 1021 T-----SKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1163)
Q Consensus 1021 ~-----s~~~Ge-~E~~Ir~lF~~A~k~~PsILfIDEID 1053 (1163)
. ...+.. .......+...+.++.|.||+|.||-
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 1 101111 11123445566778999999999995
No 386
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.04 E-value=0.005 Score=65.07 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=30.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
.+|.|.|++|+|||++.+++|+.++.+|+..|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 47999999999999999999999999998877
No 387
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.04 E-value=0.0054 Score=64.50 Aligned_cols=29 Identities=45% Similarity=0.752 Sum_probs=26.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 987 ILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
|+|+|+||+|||++|+.||+.+++.++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 89999999999999999999998877654
No 388
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.03 E-value=0.0057 Score=62.01 Aligned_cols=30 Identities=40% Similarity=0.686 Sum_probs=26.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 987 ILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
++|+|+||+|||++|+.++..+++.++..|
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~D 31 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDGD 31 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeCc
Confidence 689999999999999999999888776543
No 389
>PRK09354 recA recombinase A; Provisional
Probab=96.00 E-value=0.041 Score=64.40 Aligned_cols=73 Identities=25% Similarity=0.315 Sum_probs=49.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc----------------ccccccchHHHHHHHHHHHhccCCe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----------------TSKWFGEGEKYVKAVFSLASKIAPS 1045 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL----------------~s~~~Ge~E~~Ir~lF~~A~k~~Ps 1045 (1163)
.-++|+||+|+|||+||-.++... |-..+.+|...- .-......++.+..+-...+...+.
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~ 140 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVD 140 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCC
Confidence 447999999999999998876443 777777776541 1111122344444343445566789
Q ss_pred EEEEcccccccc
Q 001076 1046 VVFVDEVDSMLG 1057 (1163)
Q Consensus 1046 ILfIDEID~L~g 1057 (1163)
+|+||-|-.|.+
T Consensus 141 lIVIDSvaaL~~ 152 (349)
T PRK09354 141 LIVVDSVAALVP 152 (349)
T ss_pred EEEEeChhhhcc
Confidence 999999998875
No 390
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.00 E-value=0.47 Score=54.15 Aligned_cols=78 Identities=13% Similarity=0.204 Sum_probs=48.6
Q ss_pred CCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCC---------------CCCCHHHH
Q 001076 1043 APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP---------------FDLDEAVV 1107 (1163)
Q Consensus 1043 ~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p---------------~~Ld~aLl 1107 (1163)
.+-||||||+|++- + +....++..+-..++- .++.+|.+.+.. ......++
T Consensus 172 ~~iViiIDdLDR~~-----~---~~i~~~l~~ik~~~~~------~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yL 237 (325)
T PF07693_consen 172 KRIVIIIDDLDRCS-----P---EEIVELLEAIKLLLDF------PNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYL 237 (325)
T ss_pred ceEEEEEcchhcCC-----c---HHHHHHHHHHHHhcCC------CCeEEEEEecHHHHHHHHHhhcCcccccccHHHHH
Confidence 46799999999882 1 2223333333222221 567777777541 12234555
Q ss_pred h-ccCcEEEecCCCHHHHHHHHHHHHhh
Q 001076 1108 R-RLPRRLMVNLPDAPNREKIIRVILAK 1134 (1163)
Q Consensus 1108 r-RFd~vI~I~~Pd~eeR~eILk~ll~k 1134 (1163)
. -|+..+.++.|+..+...++...+..
T Consensus 238 eKiiq~~~~lP~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 238 EKIIQVPFSLPPPSPSDLERYLNELLES 265 (325)
T ss_pred HhhcCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 5 46777889999998888888887654
No 391
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.99 E-value=0.013 Score=68.21 Aligned_cols=69 Identities=20% Similarity=0.294 Sum_probs=45.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEec-cccc---------cccccchHHHHHHHHHHHhccCCeEEEEc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG----ANFINISM-SSIT---------SKWFGEGEKYVKAVFSLASKIAPSVVFVD 1050 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg----~pfi~Id~-seL~---------s~~~Ge~E~~Ir~lF~~A~k~~PsILfID 1050 (1163)
..+||.||+|+|||++.++++..+. ..++.+.- .++. ....|.........+..+.+..|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 4589999999999999999988774 23333321 1111 11122222234556677788899999999
Q ss_pred ccc
Q 001076 1051 EVD 1053 (1163)
Q Consensus 1051 EID 1053 (1163)
|+-
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 994
No 392
>PF13479 AAA_24: AAA domain
Probab=95.96 E-value=0.025 Score=61.45 Aligned_cols=68 Identities=22% Similarity=0.303 Sum_probs=39.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc-EEEEecccc-cccc-----c-cchHHHHHHHHHHH--hccCCeEEEEccccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGAN-FINISMSSI-TSKW-----F-GEGEKYVKAVFSLA--SKIAPSVVFVDEVDS 1054 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~p-fi~Id~seL-~s~~-----~-Ge~E~~Ir~lF~~A--~k~~PsILfIDEID~ 1054 (1163)
..+||||+||+|||++|..+ +-+ |+.++.... +..+ + =..-..+...+..+ ..+.-.+|+||.|+.
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~ 79 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISW 79 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHH
Confidence 47999999999999999888 222 233333311 0000 0 01122334444332 244567999999887
Q ss_pred cc
Q 001076 1055 ML 1056 (1163)
Q Consensus 1055 L~ 1056 (1163)
+.
T Consensus 80 ~~ 81 (213)
T PF13479_consen 80 LE 81 (213)
T ss_pred HH
Confidence 64
No 393
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.95 E-value=0.02 Score=69.04 Aligned_cols=97 Identities=22% Similarity=0.245 Sum_probs=63.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec-cc--
Q 001076 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISM-SS-- 1019 (1163)
Q Consensus 943 e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~-se-- 1019 (1163)
....+|++++......+.+.+.+. +|..=+|++||+|+|||+..-++.++++.+..+|-. .+
T Consensus 232 ~~~l~l~~Lg~~~~~~~~~~~~~~---------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPV 296 (500)
T COG2804 232 QVILDLEKLGMSPFQLARLLRLLN---------------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPV 296 (500)
T ss_pred cccCCHHHhCCCHHHHHHHHHHHh---------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCe
Confidence 345678888888888888888764 232348999999999999999999988655443211 11
Q ss_pred ------cccccccc-hHHHHHHHHHHHhccCCeEEEEccccc
Q 001076 1020 ------ITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDS 1054 (1163)
Q Consensus 1020 ------L~s~~~Ge-~E~~Ir~lF~~A~k~~PsILfIDEID~ 1054 (1163)
+..--+.. ..-.....++..-++.|.||.|.||-.
T Consensus 297 E~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 297 EYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred eeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCC
Confidence 11000000 001233455666789999999999963
No 394
>PRK14531 adenylate kinase; Provisional
Probab=95.95 E-value=0.0074 Score=63.86 Aligned_cols=31 Identities=29% Similarity=0.635 Sum_probs=27.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
..|+|+||||+|||++++.||..+|++++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 3699999999999999999999999887654
No 395
>PRK10436 hypothetical protein; Provisional
Probab=95.94 E-value=0.024 Score=68.73 Aligned_cols=94 Identities=18% Similarity=0.288 Sum_probs=60.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-cccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINIS-MSSI 1020 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg---~pfi~Id-~seL 1020 (1163)
..++++++-.+...+.+.+.+.. +..-||++||+|+|||++..++..+++ .+++.+- ..++
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~---------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~ 258 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ---------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEI 258 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh---------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccc
Confidence 34777888777777777776632 223589999999999998888777763 3344432 1121
Q ss_pred c-----cccccc-hHHHHHHHHHHHhccCCeEEEEcccc
Q 001076 1021 T-----SKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1163)
Q Consensus 1021 ~-----s~~~Ge-~E~~Ir~lF~~A~k~~PsILfIDEID 1053 (1163)
. ...++. ...........+.++.|.||+|.||-
T Consensus 259 ~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 259 PLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred cCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 1 001111 11234556677788999999999995
No 396
>PRK14530 adenylate kinase; Provisional
Probab=95.93 E-value=0.0073 Score=65.45 Aligned_cols=31 Identities=35% Similarity=0.618 Sum_probs=28.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
+.|+|.||||+|||++|+.||+.++++++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3699999999999999999999999887744
No 397
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=95.87 E-value=0.17 Score=59.80 Aligned_cols=114 Identities=12% Similarity=0.075 Sum_probs=64.6
Q ss_pred CeEEEEcccccccc----CCCC--cchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEe--CC--------------CCC
Q 001076 1044 PSVVFVDEVDSMLG----RREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT--NR--------------PFD 1101 (1163)
Q Consensus 1044 PsILfIDEID~L~g----~r~s--~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTT--N~--------------p~~ 1101 (1163)
|-++.||++..||+ ++.. +..... ..+..-++..+.+-.. ...+++++. .. ...
T Consensus 316 kVLvaID~~n~l~~~T~~k~~~~~~v~P~d-l~li~~~~~~i~ndwt---~g~vi~a~s~~~~~~a~~h~gv~~y~pr~l 391 (461)
T KOG3928|consen 316 KVLVAIDNFNSLFTVTAYKSEDNKPVTPLD-LTLIHLLRDIISNDWT---FGSVIMAISGVTTPSAFGHLGVAPYVPRKL 391 (461)
T ss_pred cEEEEEcCcchheeeeeeeccccCcCCchh-hhHHHHHHHHHhcccc---cceEEEEecccccchhccccccccCCchHh
Confidence 56888999999997 2221 111111 1223333333333322 223334433 11 123
Q ss_pred CCHHHHh---ccCcEEEecCCCHHHHHHHHHHHHhhC----CCCChhhHHHHHHHcCCCCHHHHHhhcC
Q 001076 1102 LDEAVVR---RLPRRLMVNLPDAPNREKIIRVILAKE----ELASDVDLEGIANMADGYSGSDLKVDYT 1163 (1163)
Q Consensus 1102 Ld~aLlr---RFd~vI~I~~Pd~eeR~eILk~ll~k~----~l~~dvdl~~LA~~TeGySgaDLk~Lvt 1163 (1163)
+++..+. -| ..|++...+.+|-..++..+++.. .+..+..+.++--++ +..++-++.+|+
T Consensus 392 lg~egfe~lqpf-~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lca 458 (461)
T KOG3928|consen 392 LGEEGFEALQPF-VPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLCA 458 (461)
T ss_pred cCccchhhccCc-CccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHHH
Confidence 4444443 34 357888899999999999998763 333345567776676 556688888774
No 398
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.86 E-value=0.0087 Score=62.12 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=29.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
..++|.|.+|+|||++|+.+|+.+|++|+..|
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 46899999999999999999999999998765
No 399
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.83 E-value=0.016 Score=55.48 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=19.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001076 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eL 1008 (1163)
+++|+||+|+|||+++..++..+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999888776665
No 400
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=95.82 E-value=0.044 Score=71.93 Aligned_cols=138 Identities=19% Similarity=0.278 Sum_probs=83.1
Q ss_pred CceEEEEcCCCChHHH-HHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHhcc--------------CCeEEE
Q 001076 984 CKGILLFGPPGTGKTM-LAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI--------------APSVVF 1048 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~-LArALA~eLg~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~--------------~PsILf 1048 (1163)
.++++++||||+|||+ +..+|-.++...|+.++.+.-.. ++..+..+-+..... .-.|||
T Consensus 1494 ~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLF 1568 (3164)
T COG5245 1494 LRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLF 1568 (3164)
T ss_pred cceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHHHhhceeeccCCeEEEccCcchhheEEE
Confidence 4789999999999999 46678888888888777544211 111222221111111 124999
Q ss_pred EccccccccCCC---CcchHHHHHHHHHH------HHHHhcCCcccCCCCEEEEEEeCCCCCC-----CHHHHhccCcEE
Q 001076 1049 VDEVDSMLGRRE---NPGEHEAMRKMKNE------FMVNWDGLRTKDKERVLVLAATNRPFDL-----DEAVVRRLPRRL 1114 (1163)
Q Consensus 1049 IDEID~L~g~r~---s~~~~eal~~il~~------LL~~Ldgl~~k~~~~VlVIaTTN~p~~L-----d~aLlrRFd~vI 1114 (1163)
.|||+ | +... ++..--+++.++.. +-..|-. -.++++.+++|++.+. .+.|+||- ..+
T Consensus 1569 cDeIn-L-p~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvT-----I~~i~l~Gacnp~td~gRv~~~eRf~r~~-v~v 1640 (3164)
T COG5245 1569 CDEIN-L-PYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVT-----ICGIILYGACNPGTDEGRVKYYERFIRKP-VFV 1640 (3164)
T ss_pred eeccC-C-ccccccCCCceEEeeHHHHHhcccccchhhhHhh-----hcceEEEccCCCCCCcccCccHHHHhcCc-eEE
Confidence 99999 3 2221 11111123332221 1111211 1579999999987543 35666653 568
Q ss_pred EecCCCHHHHHHHHHHHHhh
Q 001076 1115 MVNLPDAPNREKIIRVILAK 1134 (1163)
Q Consensus 1115 ~I~~Pd~eeR~eILk~ll~k 1134 (1163)
.+..|....-..|.+.++..
T Consensus 1641 f~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1641 FCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred EecCcchhhHHHHHHHHHHH
Confidence 88999999999999988765
No 401
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.81 E-value=0.0092 Score=63.49 Aligned_cols=28 Identities=46% Similarity=0.859 Sum_probs=24.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFI 1013 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi 1013 (1163)
.|+|.||||+||||+|+.||+.++++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hl 29 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHL 29 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 5899999999999999999999555544
No 402
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.79 E-value=0.077 Score=59.58 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=25.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~ 1017 (1163)
.-+|++|+||+|||+++..+|... |-+++.++.
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 458999999999999999886643 556655553
No 403
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.79 E-value=0.027 Score=69.95 Aligned_cols=94 Identities=19% Similarity=0.236 Sum_probs=61.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecc-c-
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-S- 1019 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg---~pfi~Id~s-e- 1019 (1163)
..++++++-.++..+.+.+++.. +..-||++||+|+|||++..++.+.++ .+++.+--+ +
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~---------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~ 356 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHK---------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEI 356 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHh---------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCcee
Confidence 35677888778878888776642 223489999999999999888877774 334433211 1
Q ss_pred ----ccccccc-chHHHHHHHHHHHhccCCeEEEEcccc
Q 001076 1020 ----ITSKWFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1163)
Q Consensus 1020 ----L~s~~~G-e~E~~Ir~lF~~A~k~~PsILfIDEID 1053 (1163)
+....+. ............+.+..|.||+|.||-
T Consensus 357 ~~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 357 NLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred cCCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 1111111 111234556677788999999999995
No 404
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.78 E-value=0.013 Score=67.51 Aligned_cols=37 Identities=27% Similarity=0.512 Sum_probs=32.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 980 LTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 980 l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
...+...|+|+|.+|+|||++++.+|..+|++|+.+|
T Consensus 129 ~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 129 RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 3456678999999999999999999999999999655
No 405
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.76 E-value=0.018 Score=66.00 Aligned_cols=69 Identities=25% Similarity=0.378 Sum_probs=47.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEec-cccc-------cccccchHHHHHHHHHHHhccCCeEEEEcc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG-----ANFINISM-SSIT-------SKWFGEGEKYVKAVFSLASKIAPSVVFVDE 1051 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg-----~pfi~Id~-seL~-------s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDE 1051 (1163)
.++|+.|++|+|||+++++++..+. ..++.+.- .++. .-..+........++..+.+..|.+|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 5799999999999999999998862 33333321 1111 101111122566788888999999999999
Q ss_pred cc
Q 001076 1052 VD 1053 (1163)
Q Consensus 1052 ID 1053 (1163)
|-
T Consensus 213 iR 214 (299)
T TIGR02782 213 VR 214 (299)
T ss_pred cC
Confidence 94
No 406
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.76 E-value=0.0076 Score=62.06 Aligned_cols=29 Identities=41% Similarity=0.693 Sum_probs=25.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 987 ILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
|+|.||+|+|||++|+.+++.++..++..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~ 29 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEG 29 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeC
Confidence 47899999999999999999999776543
No 407
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.75 E-value=0.24 Score=56.28 Aligned_cols=73 Identities=19% Similarity=0.300 Sum_probs=44.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-------cc---c----------cchHHHHHHHHHHH
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------KW---F----------GEGEKYVKAVFSLA 1039 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s-------~~---~----------Ge~E~~Ir~lF~~A 1039 (1163)
+++-++|.||+|+|||+++..+|..+ |..+.-+++..+.. .| . ..+...+...+..+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 34668999999999999999888776 55665555432110 00 0 01112223334445
Q ss_pred hccCCeEEEEcccccc
Q 001076 1040 SKIAPSVVFVDEVDSM 1055 (1163)
Q Consensus 1040 ~k~~PsILfIDEID~L 1055 (1163)
......+|+||=..++
T Consensus 151 ~~~~~D~ViIDT~G~~ 166 (272)
T TIGR00064 151 KARNIDVVLIDTAGRL 166 (272)
T ss_pred HHCCCCEEEEeCCCCC
Confidence 5555678999988654
No 408
>PRK13946 shikimate kinase; Provisional
Probab=95.72 E-value=0.0089 Score=63.34 Aligned_cols=33 Identities=27% Similarity=0.545 Sum_probs=30.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~ 1017 (1163)
+.|+|.|.+|+|||++++.||+.+|++|+..|.
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 579999999999999999999999999988773
No 409
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.71 E-value=0.0097 Score=65.75 Aligned_cols=32 Identities=34% Similarity=0.650 Sum_probs=28.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
..|+|.||||+|||++|+.||+.++++++.++
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 46999999999999999999999998887654
No 410
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=95.70 E-value=0.035 Score=59.74 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=27.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
-|.|+|++|+|||++++.++..+|++++..|
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~~D 33 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILDAD 33 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEeeCc
Confidence 4899999999999999999998899887544
No 411
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.70 E-value=0.057 Score=55.12 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=19.0
Q ss_pred ceEEEEcCCCChHHH-HHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTM-LAKAVATEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~-LArALA~eL 1008 (1163)
..+++.||+|+|||. ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 579999999999999 555555554
No 412
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.68 E-value=0.02 Score=67.58 Aligned_cols=68 Identities=22% Similarity=0.311 Sum_probs=46.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecc-ccc-----------cccccchHHHHHHHHHHHhccCCeEEE
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAG-----ANFINISMS-SIT-----------SKWFGEGEKYVKAVFSLASKIAPSVVF 1048 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg-----~pfi~Id~s-eL~-----------s~~~Ge~E~~Ir~lF~~A~k~~PsILf 1048 (1163)
.+|++||+|+|||+++++++.+.. ..++.+.-+ ++. ...+|............+.+..|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 589999999999999999988772 345554322 211 011122222345566778889999999
Q ss_pred Ecccc
Q 001076 1049 VDEVD 1053 (1163)
Q Consensus 1049 IDEID 1053 (1163)
+.|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99995
No 413
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.66 E-value=0.047 Score=59.49 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 1019 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---------g~pfi~Id~se 1019 (1163)
.-++|+||||+|||+|+..++... +..++.++...
T Consensus 20 ~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 458999999999999999997543 25677777644
No 414
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.65 E-value=0.83 Score=52.85 Aligned_cols=116 Identities=20% Similarity=0.217 Sum_probs=63.5
Q ss_pred CCeEEEEccccccccCCCC-----cchHHHHHHHHHHHHHHhcCCcccCCCCEE-EEEEeCC---CC--CCCHHHHhccC
Q 001076 1043 APSVVFVDEVDSMLGRREN-----PGEHEAMRKMKNEFMVNWDGLRTKDKERVL-VLAATNR---PF--DLDEAVVRRLP 1111 (1163)
Q Consensus 1043 ~PsILfIDEID~L~g~r~s-----~~~~eal~~il~~LL~~Ldgl~~k~~~~Vl-VIaTTN~---p~--~Ld~aLlrRFd 1111 (1163)
.|.++-||++..|++...- ..-+.....+...|+..+.+-..-.+..++ .+++|.. +. .++.++..+-.
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~~ 235 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVALGGKEG 235 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhhccccC
Confidence 4788899999999965311 011222234445555554433322223332 2555522 22 45555544322
Q ss_pred ---------------------cEEEecCCCHHHHHHHHHHHHhhCCCC----ChhhHHHHHHHcCCCCHHHHH
Q 001076 1112 ---------------------RRLMVNLPDAPNREKIIRVILAKEELA----SDVDLEGIANMADGYSGSDLK 1159 (1163)
Q Consensus 1112 ---------------------~vI~I~~Pd~eeR~eILk~ll~k~~l~----~dvdl~~LA~~TeGySgaDLk 1159 (1163)
..|.++..+.+|-..+++.+....-+. +..-.+.+...+.| .+.+|.
T Consensus 236 ~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~G-Np~el~ 307 (309)
T PF10236_consen 236 FPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNG-NPRELE 307 (309)
T ss_pred CCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCC-CHHHhc
Confidence 268899999999999999998764333 23334555544444 444443
No 415
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.64 E-value=0.066 Score=56.62 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
+...++|+||+|+||++|.+++|...
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 44569999999999999999999765
No 416
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.64 E-value=0.0098 Score=62.33 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=29.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~se 1019 (1163)
+-|+|.|+||+|||++|++++..++.+++.++...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~ 37 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDS 37 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccH
Confidence 45899999999999999999999988877665443
No 417
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.61 E-value=0.088 Score=56.87 Aligned_cols=128 Identities=23% Similarity=0.360 Sum_probs=65.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCc--EEEEeccc------------cccc-cc----c-chHHHHHHHHHHHhc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GAN--FINISMSS------------ITSK-WF----G-EGEKYVKAVFSLASK 1041 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~p--fi~Id~se------------L~s~-~~----G-e~E~~Ir~lF~~A~k 1041 (1163)
+-++|.||+|+|||+.+..||..+ +.. ++.+|... +++- +. . .+...+.+..+.+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 568999999999999888887666 333 44444321 1110 00 1 122344455555555
Q ss_pred cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHH--Hhcc-CcEEEecC
Q 001076 1042 IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAV--VRRL-PRRLMVNL 1118 (1163)
Q Consensus 1042 ~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aL--lrRF-d~vI~I~~ 1118 (1163)
..-.+||||-..+. +...+.+.++ ..++..+. +...++|+.++...+.+.... .+.+ -..+.+..
T Consensus 82 ~~~D~vlIDT~Gr~------~~d~~~~~el-~~~~~~~~-----~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTK 149 (196)
T PF00448_consen 82 KGYDLVLIDTAGRS------PRDEELLEEL-KKLLEALN-----PDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTK 149 (196)
T ss_dssp TTSSEEEEEE-SSS------STHHHHHHHH-HHHHHHHS-----SSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEES
T ss_pred cCCCEEEEecCCcc------hhhHHHHHHH-HHHhhhcC-----CccceEEEecccChHHHHHHHHHhhcccCceEEEEe
Confidence 55679999988633 1222222222 23333331 223455555555555555222 2223 12455777
Q ss_pred CCHHHH
Q 001076 1119 PDAPNR 1124 (1163)
Q Consensus 1119 Pd~eeR 1124 (1163)
.|...+
T Consensus 150 lDet~~ 155 (196)
T PF00448_consen 150 LDETAR 155 (196)
T ss_dssp TTSSST
T ss_pred ecCCCC
Confidence 665554
No 418
>PRK13764 ATPase; Provisional
Probab=95.60 E-value=0.022 Score=70.81 Aligned_cols=68 Identities=22% Similarity=0.358 Sum_probs=42.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-cccc-----ccccccchHHHHHHHHHHHhccCCeEEEEcccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG---ANFINIS-MSSI-----TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg---~pfi~Id-~seL-----~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID 1053 (1163)
.++|++||||+|||+++++++..+. ..+..+. ..++ ...+. ............+.+..|.+|++||+-
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~-~~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYS-KLEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEe-eccccHHHHHHHHHhhCCCEEEECCCC
Confidence 5799999999999999999998873 3333332 1111 11110 000112223334457789999999995
No 419
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.59 E-value=0.11 Score=56.77 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=19.7
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVA 1005 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA 1005 (1163)
+.++|+||.|+|||++.+.++
T Consensus 30 ~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 579999999999999999987
No 420
>COG1485 Predicted ATPase [General function prediction only]
Probab=95.59 E-value=0.052 Score=63.00 Aligned_cols=30 Identities=33% Similarity=0.561 Sum_probs=25.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 001076 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGA 1010 (1163)
Q Consensus 981 ~~p~kgVLL~GPPGTGKT~LArALA~eLg~ 1010 (1163)
..+++|+.|+|+-|.|||+|.-..-+.+..
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~ 91 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPG 91 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCc
Confidence 346799999999999999999988877743
No 421
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.57 E-value=0.013 Score=61.78 Aligned_cols=33 Identities=27% Similarity=0.608 Sum_probs=30.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~ 1017 (1163)
..|+|.|++|+|||++++.+|..++++|+..|.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 479999999999999999999999999987774
No 422
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.56 E-value=0.12 Score=54.90 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=17.9
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 001076 987 ILLFGPPGTGKTMLAKAVA 1005 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA 1005 (1163)
++|+||.|.|||++.+.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999987
No 423
>PRK14528 adenylate kinase; Provisional
Probab=95.56 E-value=0.012 Score=62.60 Aligned_cols=31 Identities=35% Similarity=0.604 Sum_probs=27.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
+.+++.||||+|||++|+.|++.++++++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 4699999999999999999999999887654
No 424
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.55 E-value=0.097 Score=56.20 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.5
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVA 1005 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA 1005 (1163)
+.++|+||.|+|||+|.+.|+
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 459999999999999999988
No 425
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.55 E-value=0.039 Score=49.44 Aligned_cols=30 Identities=30% Similarity=0.561 Sum_probs=24.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHh-CCcEEEEe
Q 001076 987 ILLFGPPGTGKTMLAKAVATEA-GANFINIS 1016 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA~eL-g~pfi~Id 1016 (1163)
+.|.|++|+|||++++++++.+ +.++..++
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~ 32 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 6789999999999999999996 34444444
No 426
>PRK06547 hypothetical protein; Provisional
Probab=95.50 E-value=0.014 Score=61.61 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=29.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
++.-|+|.|++|+|||++|+.|++.++.+++.+|
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 3456899999999999999999999998877654
No 427
>PRK02496 adk adenylate kinase; Provisional
Probab=95.50 E-value=0.012 Score=61.85 Aligned_cols=31 Identities=29% Similarity=0.532 Sum_probs=27.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
..++|.||||+|||++|+.||..++++++.+
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 3589999999999999999999999887765
No 428
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.50 E-value=0.026 Score=61.07 Aligned_cols=112 Identities=19% Similarity=0.276 Sum_probs=60.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcch
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1064 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~ 1064 (1163)
.-++|.|+.|+|||++.+.|+.+. + .+. +.. ... ...+..+ . .--||.|||++.+. ...
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~----~-~d~--~~~--~~~-kd~~~~l---~---~~~iveldEl~~~~-----k~~ 111 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEY----F-SDS--IND--FDD-KDFLEQL---Q---GKWIVELDELDGLS-----KKD 111 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHh----c-cCc--ccc--CCC-cHHHHHH---H---HhHheeHHHHhhcc-----hhh
Confidence 458999999999999999996662 1 111 100 000 1111111 1 11488999999763 122
Q ss_pred HHHHHHHHHHHHHHhcCC----cccCCCCEEEEEEeCCCCCCC-HHHHhccCcEEEecC
Q 001076 1065 HEAMRKMKNEFMVNWDGL----RTKDKERVLVLAATNRPFDLD-EAVVRRLPRRLMVNL 1118 (1163)
Q Consensus 1065 ~eal~~il~~LL~~Ldgl----~~k~~~~VlVIaTTN~p~~Ld-~aLlrRFd~vI~I~~ 1118 (1163)
.+.++.++..-...++.. ...-++..++|||||..+-|. +.--||| ..|.+..
T Consensus 112 ~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf-~~v~v~~ 169 (198)
T PF05272_consen 112 VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRF-WPVEVSK 169 (198)
T ss_pred HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEE-EEEEEcC
Confidence 233333332222222111 112245778899999987555 4456788 5666654
No 429
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.50 E-value=0.026 Score=62.55 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=28.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 001076 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 1020 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL 1020 (1163)
|+|+|+||+|||++|+++++.+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999988 567777765433
No 430
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.49 E-value=0.12 Score=53.75 Aligned_cols=68 Identities=25% Similarity=0.276 Sum_probs=43.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-------cc---c----------cchHHHHHHHHHHHhccC
Q 001076 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------KW---F----------GEGEKYVKAVFSLASKIA 1043 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s-------~~---~----------Ge~E~~Ir~lF~~A~k~~ 1043 (1163)
+++.|+||+|||+++..+|..+ +..+..+++..... .| . ......+......+....
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREEN 82 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhCC
Confidence 6899999999999999998776 66677666543211 00 0 111223334444455556
Q ss_pred CeEEEEccccc
Q 001076 1044 PSVVFVDEVDS 1054 (1163)
Q Consensus 1044 PsILfIDEID~ 1054 (1163)
..+|+||....
T Consensus 83 ~d~viiDt~g~ 93 (173)
T cd03115 83 FDVVIVDTAGR 93 (173)
T ss_pred CCEEEEECccc
Confidence 67888888753
No 431
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=95.45 E-value=0.033 Score=70.85 Aligned_cols=80 Identities=26% Similarity=0.449 Sum_probs=66.3
Q ss_pred cceeEEcc---CCccceeecCCCCCccceEEEEeecCCcceEEEEEecCCceEEEcCeecCCCceEEeeCCCEEEEccCC
Q 001076 151 GAVFTVGH---NRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSG 227 (1163)
Q Consensus 151 ~~~~t~G~---~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~~~~G~v~vNg~~~~k~~~~~L~~gDev~f~~~~ 227 (1163)
.-+=+||| +..-|+.|.++.|---||.|++. +|.-|+.|+-...--| |||||.|.- ...|+.||.|+|+ +
T Consensus 476 eG~TrVG~~~a~~~~DI~LsG~~I~~qHC~i~~~--~g~~~vtl~p~e~aet-yVNGk~v~e--p~qL~~GdRiilG--~ 548 (1221)
T KOG0245|consen 476 EGETRVGREDASSRQDIVLSGQLIREQHCSIRNE--GGNDVVTLEPCEDAET-YVNGKLVTE--PTQLRSGDRIILG--G 548 (1221)
T ss_pred cCceecCCCCcccCCceEecchhhhhhceEEEec--CCCceEEeccCCccce-eEccEEcCC--cceeccCCEEEEc--C
Confidence 45668995 34559999999999999999986 4444888988877756 899999976 6789999999995 6
Q ss_pred CeeEEeeecC
Q 001076 228 KHSYIFQQLS 237 (1163)
Q Consensus 228 ~~ayifq~l~ 237 (1163)
+|.|.|-+..
T Consensus 549 ~H~frfn~P~ 558 (1221)
T KOG0245|consen 549 NHVFRFNHPE 558 (1221)
T ss_pred ceeEEecCHH
Confidence 8999998873
No 432
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.44 E-value=0.037 Score=56.83 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=28.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 001076 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA~eL---g~pfi~Id~se 1019 (1163)
++|+|+||+|||++|+.|+..+ +...+.++...
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~ 37 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDN 37 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 6899999999999999999998 77777776543
No 433
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.43 E-value=0.096 Score=62.25 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=45.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc-------ccc---------ccchHHHHHHHHHHHhc-cC
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-------SKW---------FGEGEKYVKAVFSLASK-IA 1043 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~-------s~~---------~Ge~E~~Ir~lF~~A~k-~~ 1043 (1163)
++.|+|.||+|+|||+++..||..+ +..+..+++.... ..| ....+..+......+.. ..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 3679999999999999999998777 4455545543211 001 11233344454444443 24
Q ss_pred CeEEEEcccccc
Q 001076 1044 PSVVFVDEVDSM 1055 (1163)
Q Consensus 1044 PsILfIDEID~L 1055 (1163)
..+||||-..+.
T Consensus 321 ~DvVLIDTaGRs 332 (436)
T PRK11889 321 VDYILIDTAGKN 332 (436)
T ss_pred CCEEEEeCcccc
Confidence 689999988654
No 434
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.43 E-value=0.025 Score=65.83 Aligned_cols=69 Identities=23% Similarity=0.359 Sum_probs=47.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC--cEEEE-ecccccc-----------cc--ccchHHHHHHHHHHHhccCCeEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGA--NFINI-SMSSITS-----------KW--FGEGEKYVKAVFSLASKIAPSVVF 1048 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~--pfi~I-d~seL~s-----------~~--~Ge~E~~Ir~lF~~A~k~~PsILf 1048 (1163)
.+||++|++|+|||+++++++..... .++.+ +..++.- .. .+...-....++..+.+..|.+|+
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~Ii 240 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRII 240 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeEE
Confidence 57999999999999999999988842 33333 1122210 00 111122456788889999999999
Q ss_pred Ecccc
Q 001076 1049 VDEVD 1053 (1163)
Q Consensus 1049 IDEID 1053 (1163)
+.|+-
T Consensus 241 vGEiR 245 (332)
T PRK13900 241 VGELR 245 (332)
T ss_pred EEecC
Confidence 99995
No 435
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.43 E-value=0.015 Score=60.83 Aligned_cols=31 Identities=26% Similarity=0.495 Sum_probs=27.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
+-|+|.||||+|||++|+.|++.+|+.++..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 4689999999999999999999998776544
No 436
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.11 Score=61.45 Aligned_cols=96 Identities=22% Similarity=0.370 Sum_probs=67.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEeccccc------c--------ccccchHHHHHHHHHHHhccCCeE
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSIT------S--------KWFGEGEKYVKAVFSLASKIAPSV 1046 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL--g~pfi~Id~seL~------s--------~~~Ge~E~~Ir~lF~~A~k~~PsI 1046 (1163)
|..-+||-|.||.|||+|.-.++..+ ..+++++...+-. . ...-..|..+..+...+...+|.+
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~l 171 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDL 171 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCE
Confidence 43458999999999999888887776 2378888876521 1 111224556778888888999999
Q ss_pred EEEccccccccCC--CCcchHHHHHHHHHHHHHH
Q 001076 1047 VFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMVN 1078 (1163)
Q Consensus 1047 LfIDEID~L~g~r--~s~~~~eal~~il~~LL~~ 1078 (1163)
++||-|..++... ..++.-...+..-.+|+..
T Consensus 172 vVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~ 205 (456)
T COG1066 172 VVIDSIQTLYSEEITSAPGSVSQVREVAAELMRL 205 (456)
T ss_pred EEEeccceeecccccCCCCcHHHHHHHHHHHHHH
Confidence 9999999998554 2344445566666666654
No 437
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.36 E-value=0.076 Score=55.89 Aligned_cols=73 Identities=26% Similarity=0.439 Sum_probs=42.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh-------------CCcEEEEeccccc-----------ccc-------c---------
Q 001076 986 GILLFGPPGTGKTMLAKAVATEA-------------GANFINISMSSIT-----------SKW-------F--------- 1025 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eL-------------g~pfi~Id~seL~-----------s~~-------~--------- 1025 (1163)
-++|+||+|+|||+++..++..+ +..++.+++..-. ..+ +
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 113 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCI 113 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccc
Confidence 48999999999999988887655 2356667653310 000 0
Q ss_pred --------c-chHHHHHHHHHHHhc-cCCeEEEEccccccccC
Q 001076 1026 --------G-EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGR 1058 (1163)
Q Consensus 1026 --------G-e~E~~Ir~lF~~A~k-~~PsILfIDEID~L~g~ 1058 (1163)
+ ..+..+..+...+.. ..+.+|+||.+..+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 114 RLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp ---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 0 012234456666666 67899999999999865
No 438
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.34 E-value=0.014 Score=62.98 Aligned_cols=29 Identities=41% Similarity=0.748 Sum_probs=26.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 987 ILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
|+|.||||+|||++|+.||..+|++++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 89999999999999999999999877664
No 439
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.34 E-value=0.33 Score=56.41 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=44.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-------cc--------c----c-chHHHHHHHHHHH
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------KW--------F----G-EGEKYVKAVFSLA 1039 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s-------~~--------~----G-e~E~~Ir~lF~~A 1039 (1163)
++.-++|.||+|+|||+++..||..+ +..+.-+++..... .| + + .+...+...+..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999998877 55555555432110 00 0 0 1111222333444
Q ss_pred hccCCeEEEEcccccc
Q 001076 1040 SKIAPSVVFVDEVDSM 1055 (1163)
Q Consensus 1040 ~k~~PsILfIDEID~L 1055 (1163)
....-.+|+||=..++
T Consensus 193 ~~~~~D~ViIDTaGr~ 208 (318)
T PRK10416 193 KARGIDVLIIDTAGRL 208 (318)
T ss_pred HhCCCCEEEEeCCCCC
Confidence 5556689999988755
No 440
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.33 E-value=0.039 Score=58.64 Aligned_cols=69 Identities=30% Similarity=0.498 Sum_probs=45.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecc-cccc---ccc----------cchHHHHHHHHHHHhccCCeEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMS-SITS---KWF----------GEGEKYVKAVFSLASKIAPSVVF 1048 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg--~pfi~Id~s-eL~s---~~~----------Ge~E~~Ir~lF~~A~k~~PsILf 1048 (1163)
..++|.||+|+|||+++++++..+. ...+.+.-. ++.. .+. +........++..+.+..|.+|+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~ 105 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRII 105 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEE
Confidence 5799999999999999999998763 222322211 1100 000 11123456677778888999999
Q ss_pred Ecccc
Q 001076 1049 VDEVD 1053 (1163)
Q Consensus 1049 IDEID 1053 (1163)
+.||-
T Consensus 106 igEir 110 (186)
T cd01130 106 VGEVR 110 (186)
T ss_pred EEccC
Confidence 99994
No 441
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.33 E-value=0.016 Score=62.84 Aligned_cols=30 Identities=40% Similarity=0.699 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
.|+++||||+|||++|+.||+.++++++.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 489999999999999999999999777664
No 442
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.32 E-value=0.042 Score=57.97 Aligned_cols=29 Identities=34% Similarity=0.458 Sum_probs=25.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 987 ILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
|.|+|++|+|||++++.+++ +|++++..|
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D 30 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDAD 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecC
Confidence 68999999999999999999 888776655
No 443
>PRK04328 hypothetical protein; Provisional
Probab=95.30 E-value=0.16 Score=56.65 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=25.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~ 1017 (1163)
+...+|++|+||+|||.|+..++.+. |-+.+.++.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 34568999999999999998876542 555555543
No 444
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.27 E-value=0.16 Score=54.51 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.7
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVA 1005 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA 1005 (1163)
..++|+||.|+|||++.+.|+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 569999999999999999998
No 445
>PLN02200 adenylate kinase family protein
Probab=95.27 E-value=0.02 Score=63.46 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=29.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~ 1021 (1163)
+.-|+|.|+||+|||++|+.||+.+|+.. +++.++.
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gdll 78 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGDLL 78 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccHHH
Confidence 35689999999999999999999998765 5555554
No 446
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.24 E-value=0.16 Score=55.19 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=27.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~s 1018 (1163)
..-++|.|+||+|||.++..++... |-+++.++..
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 3568999999999999999887553 6677666653
No 447
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.23 E-value=0.015 Score=56.45 Aligned_cols=22 Identities=45% Similarity=0.647 Sum_probs=21.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 001076 987 ILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA~eL 1008 (1163)
|+|.|+||+|||++|+.|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999988
No 448
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.18 E-value=0.013 Score=75.37 Aligned_cols=99 Identities=17% Similarity=0.170 Sum_probs=52.8
Q ss_pred eeeecCCCCCCCCCCCC--CCCCCCcc--ccccccc--cc----CCCcchhhHHHHHHHHHHHHhhcc-CCCeEEEEcch
Q 001076 645 GVRFDRSIPEGNNLGGF--CEDDHGFF--CTASSLR--LD----SSLGDEVDKLAINELFEVALNESK-SSPLIVFVKDI 713 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~~~--c~~~~~ff--~~~~~~~--~d----~s~~~~~~~~~l~~l~evl~~e~k-~~P~IIffddi 713 (1163)
.+.|-+|+|+|||.... +..-..-| ++.+... -+ ...|.+...-.+...| .++. .+| |||||||
T Consensus 349 ~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l----~~~~~~~~-villDEi 423 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGL----KKAKTKNP-LFLLDEI 423 (775)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHH----HHhCcCCC-EEEEech
Confidence 47788899999987622 22111211 1111111 00 1345544322232222 2333 566 7899999
Q ss_pred hhhhcC-ChhhHHHHHHHHhc-----C----------CCCEEEEEeccccc
Q 001076 714 EKSLTG-NNDAYGALKSKLEN-----L----------PSNVVVIGSHTQLD 748 (1163)
Q Consensus 714 d~~La~-~~~~~~~i~s~L~~-----L----------~g~VivIgs~~~~d 748 (1163)
|++..+ +++.++.|-..|+. + .+++++|+++|..+
T Consensus 424 dk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~ 474 (775)
T TIGR00763 424 DKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSID 474 (775)
T ss_pred hhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCch
Confidence 995443 55666666666542 1 14788898888543
No 449
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.10 E-value=0.22 Score=63.26 Aligned_cols=155 Identities=20% Similarity=0.242 Sum_probs=88.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEeccc-------cccc-------c---ccc-------------hHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA--GANFINISMSS-------ITSK-------W---FGE-------------GEKYV 1032 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL--g~pfi~Id~se-------L~s~-------~---~Ge-------------~E~~I 1032 (1163)
+=+||.-|.|.|||+|+...+..+ +..+..+++.+ +.+. + .+. .+..+
T Consensus 38 RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~ 117 (894)
T COG2909 38 RLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLL 117 (894)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHH
Confidence 458999999999999999998644 45554444433 1100 0 111 12244
Q ss_pred HHHHHH-HhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccC
Q 001076 1033 KAVFSL-ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP 1111 (1163)
Q Consensus 1033 r~lF~~-A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd 1111 (1163)
..+|.+ +....|.++|||+.+.+- ++.-++ .+.-|+.. .+.++.+|.||...-.+.-+-+|-=+
T Consensus 118 ~~L~~Ela~~~~pl~LVlDDyHli~----~~~l~~----~l~fLl~~-------~P~~l~lvv~SR~rP~l~la~lRlr~ 182 (894)
T COG2909 118 SSLLNELASYEGPLYLVLDDYHLIS----DPALHE----ALRFLLKH-------APENLTLVVTSRSRPQLGLARLRLRD 182 (894)
T ss_pred HHHHHHHHhhcCceEEEeccccccC----cccHHH----HHHHHHHh-------CCCCeEEEEEeccCCCCcccceeehh
Confidence 555543 455689999999999772 222233 33334433 23678888888442222211111001
Q ss_pred cEEEec----CCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHH
Q 001076 1112 RRLMVN----LPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGS 1156 (1163)
Q Consensus 1112 ~vI~I~----~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySga 1156 (1163)
..++|. ..+.++-.++|+..... -.+..++..|-..|+|..++
T Consensus 183 ~llEi~~~~Lrf~~eE~~~fl~~~~~l--~Ld~~~~~~L~~~teGW~~a 229 (894)
T COG2909 183 ELLEIGSEELRFDTEEAAAFLNDRGSL--PLDAADLKALYDRTEGWAAA 229 (894)
T ss_pred hHHhcChHhhcCChHHHHHHHHHcCCC--CCChHHHHHHHhhcccHHHH
Confidence 112221 23678888888776522 13567788999999987653
No 450
>PRK10263 DNA translocase FtsK; Provisional
Probab=95.09 E-value=0.17 Score=67.15 Aligned_cols=75 Identities=16% Similarity=0.271 Sum_probs=48.7
Q ss_pred eEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCC--CCCHHHHhccCcEEEecCCCHH
Q 001076 1045 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--DLDEAVVRRLPRRLMVNLPDAP 1122 (1163)
Q Consensus 1045 sILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~--~Ld~aLlrRFd~vI~I~~Pd~e 1122 (1163)
-||+|||+..|+.... ......+..+...= ....|-+|.+|.+|. .|...++.-|..+|.|..-+..
T Consensus 1142 IVVIIDE~AdLm~~~~-----kevE~lI~rLAqkG------RAaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS~~ 1210 (1355)
T PRK10263 1142 IVVLVDEFADLMMTVG-----KKVEELIARLAQKA------RAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKI 1210 (1355)
T ss_pred EEEEEcChHHHHhhhh-----HHHHHHHHHHHHHh------hhcCeEEEEEecCcccccchHHHHhhccceEEEEcCCHH
Confidence 4899999988753211 11222222222211 125688888898875 5666677789999999998888
Q ss_pred HHHHHHHH
Q 001076 1123 NREKIIRV 1130 (1163)
Q Consensus 1123 eR~eILk~ 1130 (1163)
+-..||..
T Consensus 1211 DSrtILd~ 1218 (1355)
T PRK10263 1211 DSRTILDQ 1218 (1355)
T ss_pred HHHHhcCC
Confidence 87777654
No 451
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.04 E-value=0.035 Score=63.84 Aligned_cols=69 Identities=23% Similarity=0.423 Sum_probs=45.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEe-cccccc---cc----c-----cchHHHHHHHHHHHhccCCeEEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGA--NFINIS-MSSITS---KW----F-----GEGEKYVKAVFSLASKIAPSVVFV 1049 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~--pfi~Id-~seL~s---~~----~-----Ge~E~~Ir~lF~~A~k~~PsILfI 1049 (1163)
..++|.||+|+|||+|+++++..+.. ..+.+. ..++.. .+ . +...-....++..+.+..|.+|++
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii~ 224 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRIIL 224 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeEEE
Confidence 68999999999999999999987732 222222 111110 00 0 111224566777888899999999
Q ss_pred cccc
Q 001076 1050 DEVD 1053 (1163)
Q Consensus 1050 DEID 1053 (1163)
||+-
T Consensus 225 gE~r 228 (308)
T TIGR02788 225 GELR 228 (308)
T ss_pred eccC
Confidence 9995
No 452
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.04 E-value=0.08 Score=57.57 Aligned_cols=23 Identities=52% Similarity=0.716 Sum_probs=21.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001076 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eL 1008 (1163)
=|+|+|+||+|||++|+.+|+++
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 38999999999999999999999
No 453
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.02 E-value=0.19 Score=54.78 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=25.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~ 1017 (1163)
+...++|.|+||+|||+|+..++.+. +-+.+.++.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 34669999999999999999876543 555555553
No 454
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.01 E-value=0.024 Score=61.86 Aligned_cols=36 Identities=42% Similarity=0.563 Sum_probs=27.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~ 1021 (1163)
-++|+||+|||||.+|-++|+..|.|++..|.-...
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y 38 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCY 38 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecc
Confidence 379999999999999999999999999999965543
No 455
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.00 E-value=0.34 Score=53.47 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=18.7
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 001076 987 ILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA~e 1007 (1163)
-||+||+|+|||+|+..+|..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999988764
No 456
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.97 E-value=0.048 Score=63.23 Aligned_cols=69 Identities=25% Similarity=0.426 Sum_probs=46.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe-ccccc---cc---cccchHHHHHHHHHHHhccCCeEEEEccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINIS-MSSIT---SK---WFGEGEKYVKAVFSLASKIAPSVVFVDEV 1052 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL-----g~pfi~Id-~seL~---s~---~~Ge~E~~Ir~lF~~A~k~~PsILfIDEI 1052 (1163)
.++|+.|++|+|||+++++++... ...++.+. ..++. .. +....+-....++..+.+..|..|++.||
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGEi 228 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGEV 228 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 589999999999999999999874 12233222 12221 01 11112234677888899999999999999
Q ss_pred c
Q 001076 1053 D 1053 (1163)
Q Consensus 1053 D 1053 (1163)
-
T Consensus 229 R 229 (319)
T PRK13894 229 R 229 (319)
T ss_pred C
Confidence 4
No 457
>PRK04182 cytidylate kinase; Provisional
Probab=94.97 E-value=0.023 Score=58.81 Aligned_cols=30 Identities=37% Similarity=0.655 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
.|+|.|++|+|||++|+.||+.+|++++..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~ 31 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSA 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecH
Confidence 489999999999999999999999988753
No 458
>PRK14527 adenylate kinase; Provisional
Probab=94.95 E-value=0.022 Score=60.51 Aligned_cols=31 Identities=35% Similarity=0.655 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
.-++++||||+|||++|+.||+.+++..+..
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 5699999999999999999999998876654
No 459
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.94 E-value=0.053 Score=56.70 Aligned_cols=38 Identities=29% Similarity=0.369 Sum_probs=32.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s 1022 (1163)
.-|+|+|.+|+|||+||++|.+.+ |.+++.+|...+..
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 358999999999999999999887 88999999776553
No 460
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.93 E-value=0.022 Score=59.62 Aligned_cols=28 Identities=36% Similarity=0.676 Sum_probs=26.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001076 987 ILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA~eLg~pfi~ 1014 (1163)
|-+.||||+|||++|+.||..+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6789999999999999999999999986
No 461
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.92 E-value=0.078 Score=56.88 Aligned_cols=40 Identities=28% Similarity=0.482 Sum_probs=30.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecccccc
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITS 1022 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL-g~pfi~Id~seL~s 1022 (1163)
.|.-+++.|+||+|||+++..+...+ +-.++.+|..++..
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ 54 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence 34668999999999999999999988 78888888777553
No 462
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.91 E-value=0.034 Score=65.03 Aligned_cols=69 Identities=22% Similarity=0.448 Sum_probs=46.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEe-cccccc---c-----c----ccchHHHHHHHHHHHhccCCeEEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGA--NFINIS-MSSITS---K-----W----FGEGEKYVKAVFSLASKIAPSVVFV 1049 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~--pfi~Id-~seL~s---~-----~----~Ge~E~~Ir~lF~~A~k~~PsILfI 1049 (1163)
.++|+.||+|+|||+++++++..... .++.+. ..++.- . + .+...-....++..+.+..|.+|++
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~Iiv 242 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRILL 242 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeEEE
Confidence 57999999999999999999988742 233321 111110 0 0 0111224567888888999999999
Q ss_pred cccc
Q 001076 1050 DEVD 1053 (1163)
Q Consensus 1050 DEID 1053 (1163)
.|+-
T Consensus 243 GEiR 246 (344)
T PRK13851 243 GEMR 246 (344)
T ss_pred EeeC
Confidence 9994
No 463
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.90 E-value=0.058 Score=61.51 Aligned_cols=71 Identities=24% Similarity=0.418 Sum_probs=48.3
Q ss_pred ce-EEEEcCCCChHHHHHHHHHHHhC----CcEEEEecc-c---------cccccccchHHHHHHHHHHHhccCCeEEEE
Q 001076 985 KG-ILLFGPPGTGKTMLAKAVATEAG----ANFINISMS-S---------ITSKWFGEGEKYVKAVFSLASKIAPSVVFV 1049 (1163)
Q Consensus 985 kg-VLL~GPPGTGKT~LArALA~eLg----~pfi~Id~s-e---------L~s~~~Ge~E~~Ir~lF~~A~k~~PsILfI 1049 (1163)
+| ||++||+|+|||+...++..+.+ .+.+.+--+ + +...-+|............|-+..|.||++
T Consensus 125 ~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlv 204 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILV 204 (353)
T ss_pred CceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEE
Confidence 34 89999999999998888877774 334444211 1 112234444555566677788889999999
Q ss_pred cccccc
Q 001076 1050 DEVDSM 1055 (1163)
Q Consensus 1050 DEID~L 1055 (1163)
-|+-.+
T Consensus 205 GEmRD~ 210 (353)
T COG2805 205 GEMRDL 210 (353)
T ss_pred eccccH
Confidence 999643
No 464
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.90 E-value=0.034 Score=64.97 Aligned_cols=23 Identities=52% Similarity=0.642 Sum_probs=21.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001076 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eL 1008 (1163)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47999999999999999999988
No 465
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.88 E-value=0.12 Score=66.02 Aligned_cols=99 Identities=21% Similarity=0.276 Sum_probs=55.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---C--CcEEEEeccc----cccccccchHHHHHHHHHHH----------hccCCeE
Q 001076 986 GILLFGPPGTGKTMLAKAVATEA---G--ANFINISMSS----ITSKWFGEGEKYVKAVFSLA----------SKIAPSV 1046 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eL---g--~pfi~Id~se----L~s~~~Ge~E~~Ir~lF~~A----------~k~~PsI 1046 (1163)
-++|.|+||||||++++++...+ + .+++-+.... -+....|.....+..++... ......+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 58999999999999999987655 4 3444333211 11222233334444444321 1134579
Q ss_pred EEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCC
Q 001076 1047 VFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1163)
Q Consensus 1047 LfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~ 1101 (1163)
|+|||+..+- ..++..++..+ . ...++++++=.+..-.
T Consensus 420 lIvDEaSMvd------------~~~~~~Ll~~~---~--~~~rlilvGD~~QLps 457 (720)
T TIGR01448 420 LIVDESSMMD------------TWLALSLLAAL---P--DHARLLLVGDTDQLPS 457 (720)
T ss_pred EEEeccccCC------------HHHHHHHHHhC---C--CCCEEEEECccccccC
Confidence 9999997551 12333444332 2 2367888887765433
No 466
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.88 E-value=0.051 Score=63.04 Aligned_cols=69 Identities=23% Similarity=0.348 Sum_probs=46.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEe-cccccc------ccccchHHHHHHHHHHHhccCCeEEEEccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG-----ANFINIS-MSSITS------KWFGEGEKYVKAVFSLASKIAPSVVFVDEV 1052 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg-----~pfi~Id-~seL~s------~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEI 1052 (1163)
.++|+.|++|+|||+++++++.... ..++.+. ..++.- .+.....-....++..+.+..|.+|++.||
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 5799999999999999999998762 2333332 222211 011111224567788888999999999999
Q ss_pred c
Q 001076 1053 D 1053 (1163)
Q Consensus 1053 D 1053 (1163)
-
T Consensus 225 R 225 (323)
T PRK13833 225 R 225 (323)
T ss_pred C
Confidence 4
No 467
>PRK01184 hypothetical protein; Provisional
Probab=94.83 E-value=0.025 Score=59.48 Aligned_cols=29 Identities=34% Similarity=0.535 Sum_probs=25.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
-|+|+|+||+|||++++ +++++|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 58999999999999987 789999888665
No 468
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.82 E-value=0.12 Score=53.68 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=42.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecccccc--------ccccc----hH-HHHHHHHHHHhccCCeEE
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSITS--------KWFGE----GE-KYVKAVFSLASKIAPSVV 1047 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eLg~--pfi~Id~seL~s--------~~~Ge----~E-~~Ir~lF~~A~k~~PsIL 1047 (1163)
+...+.|.||.|+|||+|.+.|+..... --+.++...+.. ..++. +. +.-+-.+..|--..|.||
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLL 104 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEE
Confidence 4456899999999999999999876521 112333221110 00110 11 122224555666789999
Q ss_pred EEcccc
Q 001076 1048 FVDEVD 1053 (1163)
Q Consensus 1048 fIDEID 1053 (1163)
++||--
T Consensus 105 llDEP~ 110 (163)
T cd03216 105 ILDEPT 110 (163)
T ss_pred EEECCC
Confidence 999985
No 469
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.82 E-value=0.11 Score=59.95 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 1019 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---------g~pfi~Id~se 1019 (1163)
.-++|+||||+|||.++..+|... +..+++++...
T Consensus 103 ~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 103 SITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred cEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 458999999999999999998653 33677777654
No 470
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.82 E-value=0.079 Score=61.85 Aligned_cols=59 Identities=22% Similarity=0.307 Sum_probs=43.8
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEe
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINIS 1016 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL-g~pfi~Id 1016 (1163)
++.|+++.++++..++...-+ +....-+-++|.||+|+|||+|++.|-+.+ .++++.+.
T Consensus 62 ~~~G~~~~i~~lV~~fk~AA~--------g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~ 121 (358)
T PF08298_consen 62 EFYGMEETIERLVNYFKSAAQ--------GLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLK 121 (358)
T ss_pred cccCcHHHHHHHHHHHHHHHh--------ccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEec
Confidence 789999999999998764221 222222458999999999999999998887 44555553
No 471
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.79 E-value=0.036 Score=59.03 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=17.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 001076 987 ILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA~eL 1008 (1163)
.++.||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999998666665554
No 472
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=94.79 E-value=0.084 Score=62.78 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG 1009 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg 1009 (1163)
..++|.||+|+|||+|++.|++...
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 4699999999999999999999863
No 473
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.77 E-value=0.028 Score=57.83 Aligned_cols=29 Identities=41% Similarity=0.702 Sum_probs=26.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 987 ILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
|.|+|++|+|||++|+.+++.++++++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999997654
No 474
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.76 E-value=0.17 Score=60.83 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=47.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc--------------c-cccc-----chHHHHHHHHHHH
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT--------------S-KWFG-----EGEKYVKAVFSLA 1039 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~--------------s-~~~G-----e~E~~Ir~lF~~A 1039 (1163)
++.-|+|+|++|+|||+++..||..+ |..+.-+++.... . .++. .+.......+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 34568999999999999999998777 6666666653311 0 0011 1122334455556
Q ss_pred hccCCeEEEEcccccc
Q 001076 1040 SKIAPSVVFVDEVDSM 1055 (1163)
Q Consensus 1040 ~k~~PsILfIDEID~L 1055 (1163)
+.....+||||=..++
T Consensus 179 ~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 179 KKENFDIIIVDTSGRH 194 (429)
T ss_pred HhCCCCEEEEECCCCC
Confidence 5556789999988654
No 475
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.74 E-value=0.27 Score=58.94 Aligned_cols=130 Identities=18% Similarity=0.264 Sum_probs=64.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecccccc-------cc---cc---chHHHHHHHHHHHhccCCeEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITS-------KW---FG---EGEKYVKAVFSLASKIAPSVV 1047 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL----g~pfi~Id~seL~s-------~~---~G---e~E~~Ir~lF~~A~k~~PsIL 1047 (1163)
.-++|.||+|+|||+++..+|..+ |..+..+++..... .| .+ .....+..+...+......+|
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 458999999999999999998654 44454444433110 00 01 011113333444444556889
Q ss_pred EEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcc-cCCCCEEEEEEeCCCCCCCHHHHh--ccC-cEEEecCCCHHH
Q 001076 1048 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-KDKERVLVLAATNRPFDLDEAVVR--RLP-RRLMVNLPDAPN 1123 (1163)
Q Consensus 1048 fIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~-k~~~~VlVIaTTN~p~~Ld~aLlr--RFd-~vI~I~~Pd~ee 1123 (1163)
+||=..+. +.....+ .++...++.... .....++|+.+|...+.+...+.. .++ ..+.+...|...
T Consensus 304 LIDTaGr~------~rd~~~l----~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLDEt~ 373 (432)
T PRK12724 304 LIDTAGYS------HRNLEQL----ERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEAD 373 (432)
T ss_pred EEeCCCCC------ccCHHHH----HHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcccCCC
Confidence 99965422 1111222 222222222111 122567777777666555433322 221 235555555544
Q ss_pred H
Q 001076 1124 R 1124 (1163)
Q Consensus 1124 R 1124 (1163)
+
T Consensus 374 ~ 374 (432)
T PRK12724 374 F 374 (432)
T ss_pred C
Confidence 4
No 476
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.73 E-value=0.39 Score=51.07 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=21.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
+..-+.|.||.|+|||+|.++++..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 3356899999999999999999643
No 477
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.72 E-value=0.11 Score=58.07 Aligned_cols=92 Identities=14% Similarity=0.087 Sum_probs=53.2
Q ss_pred eeeecCCCCCCCCCCCCC-----------CCCCCcccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcch
Q 001076 645 GVRFDRSIPEGNNLGGFC-----------EDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDI 713 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~~~c-----------~~~~~ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddi 713 (1163)
.|.|.+|+|+|||.-+.. ..++-+.|...++ .+.|.++....++.+|+.+ .+-||||||+
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l---~~~~~g~~~~~~~~~~~~a------~~~VL~IDE~ 114 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADL---VGEYIGHTAQKTREVIKKA------LGGVLFIDEA 114 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHh---hhhhccchHHHHHHHHHhc------cCCEEEEech
Confidence 478889999999865211 1111112222222 3567777766565555432 3469999999
Q ss_pred hhhhcC-C----hhhHHHHHHHHhcCCCCEEEEEecc
Q 001076 714 EKSLTG-N----NDAYGALKSKLENLPSNVVVIGSHT 745 (1163)
Q Consensus 714 d~~La~-~----~~~~~~i~s~L~~L~g~VivIgs~~ 745 (1163)
|.+..+ + .+....+...++..++++++|++.+
T Consensus 115 ~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~ 151 (261)
T TIGR02881 115 YSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGY 151 (261)
T ss_pred hhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCC
Confidence 994322 1 1233345555566677888877654
No 478
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.71 E-value=0.19 Score=64.37 Aligned_cols=73 Identities=23% Similarity=0.287 Sum_probs=47.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH---hCCcEEEEecccccc----------------ccccchHHHHHHHHHHHhccCCe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATE---AGANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKIAPS 1045 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~e---Lg~pfi~Id~seL~s----------------~~~Ge~E~~Ir~lF~~A~k~~Ps 1045 (1163)
.-++|+||+|+|||+|+..++.. .|-.++.++..+-.. ......|..+..+-.......+.
T Consensus 61 siteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~ 140 (790)
T PRK09519 61 RVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALD 140 (790)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCCe
Confidence 45899999999999999765433 366777777544211 01112233333333334556789
Q ss_pred EEEEcccccccc
Q 001076 1046 VVFVDEVDSMLG 1057 (1163)
Q Consensus 1046 ILfIDEID~L~g 1057 (1163)
+|+||-|..|+.
T Consensus 141 LVVIDSI~aL~~ 152 (790)
T PRK09519 141 IVVIDSVAALVP 152 (790)
T ss_pred EEEEcchhhhcc
Confidence 999999999985
No 479
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.68 E-value=0.16 Score=61.98 Aligned_cols=73 Identities=21% Similarity=0.223 Sum_probs=51.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc----c----------cccc--------------cchHHHH
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----T----------SKWF--------------GEGEKYV 1032 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL----~----------s~~~--------------Ge~E~~I 1032 (1163)
..-+||.||||+|||+|+..++... |-+.+++...+- . ..+. ...+..+
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~~ 342 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLEDHL 342 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHHHH
Confidence 3569999999999999999987765 556666654331 0 0000 0124566
Q ss_pred HHHHHHHhccCCeEEEEccccccc
Q 001076 1033 KAVFSLASKIAPSVVFVDEVDSML 1056 (1163)
Q Consensus 1033 r~lF~~A~k~~PsILfIDEID~L~ 1056 (1163)
..+.+.+....|.+|+||-|..+.
T Consensus 343 ~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 343 QIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHcCCCEEEEcCHHHHH
Confidence 777778888889999999998774
No 480
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.66 E-value=0.18 Score=57.90 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=27.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 1019 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---------g~pfi~Id~se 1019 (1163)
.-++|+||||+|||+|+..+|... +-.+++++..+
T Consensus 96 ~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 96 AITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 447999999999999999998663 23678888655
No 481
>PLN02674 adenylate kinase
Probab=94.65 E-value=0.032 Score=62.32 Aligned_cols=32 Identities=28% Similarity=0.486 Sum_probs=27.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
...|+|.||||+||+++|+.||+.++++++..
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~ 62 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLAT 62 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEch
Confidence 46799999999999999999999998766543
No 482
>PTZ00202 tuzin; Provisional
Probab=94.65 E-value=0.52 Score=56.79 Aligned_cols=60 Identities=12% Similarity=0.187 Sum_probs=46.1
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 001076 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS 1018 (1163)
Q Consensus 948 fddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~s 1018 (1163)
..++.|.+.....|...+.. .... .+.-++|+|++|+|||+|++.++..++.+.+.+|..
T Consensus 261 ~~~FVGReaEla~Lr~VL~~----------~d~~-~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRR----------LDTA-HPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhc----------cCCC-CceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 34788999999999887742 1111 224579999999999999999999999777777654
No 483
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.65 E-value=0.16 Score=57.82 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=27.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----C-CcEEEEeccc
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA----G-ANFINISMSS 1019 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL----g-~pfi~Id~se 1019 (1163)
+..++|.||+|+|||+++..||..+ | ..+..+++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3568999999999999999888765 3 5665565543
No 484
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.63 E-value=0.03 Score=57.17 Aligned_cols=32 Identities=38% Similarity=0.658 Sum_probs=25.8
Q ss_pred EEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 001076 989 LFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1163)
Q Consensus 989 L~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s 1022 (1163)
|.||||+|||++|+.||+++|+. .+++.+++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~--~is~~~llr 32 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV--HISVGDLLR 32 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE--EEEHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc--eechHHHHH
Confidence 68999999999999999999765 455555543
No 485
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.57 E-value=0.031 Score=63.25 Aligned_cols=32 Identities=38% Similarity=0.481 Sum_probs=26.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA-GANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL-g~pfi~Id 1016 (1163)
.-|+|.|+||+|||++|+.|++.+ ++.++..|
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D 35 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNRD 35 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEecc
Confidence 358999999999999999999999 66555443
No 486
>PRK06696 uridine kinase; Validated
Probab=94.57 E-value=0.039 Score=60.29 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=31.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~ 1021 (1163)
.-|.|.|++|+|||+||+.|+..+ |.+++.+.+.++.
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 568999999999999999999998 7788887766644
No 487
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.55 E-value=0.026 Score=59.70 Aligned_cols=30 Identities=37% Similarity=0.594 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
.++++|.||+|||++++.|+ .+|.+++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 48999999999999999999 9999988765
No 488
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.48 E-value=0.062 Score=58.57 Aligned_cols=24 Identities=50% Similarity=0.674 Sum_probs=19.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
.-+.+.||.|||||+||-+.|-++
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 368999999999999999998666
No 489
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.47 E-value=0.035 Score=57.34 Aligned_cols=27 Identities=41% Similarity=0.634 Sum_probs=21.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFI 1013 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi 1013 (1163)
.|.|+|++|||||+|+++|+.. |++++
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 3789999999999999999998 88876
No 490
>PRK10867 signal recognition particle protein; Provisional
Probab=94.47 E-value=0.35 Score=58.44 Aligned_cols=73 Identities=23% Similarity=0.277 Sum_probs=47.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccccc---------------cc-----cchHHHHHHHHHH
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSK---------------WF-----GEGEKYVKAVFSL 1038 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL----g~pfi~Id~seL~s~---------------~~-----Ge~E~~Ir~lF~~ 1038 (1163)
++.-++++|++|+|||+++..+|..+ |..+..+++...... ++ ..+..........
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 34679999999999999888777654 566666665421110 01 1233344456666
Q ss_pred HhccCCeEEEEcccccc
Q 001076 1039 ASKIAPSVVFVDEVDSM 1055 (1163)
Q Consensus 1039 A~k~~PsILfIDEID~L 1055 (1163)
++.....+|+||=..++
T Consensus 179 a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 179 AKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHhcCCCEEEEeCCCCc
Confidence 66667789999988755
No 491
>PRK12608 transcription termination factor Rho; Provisional
Probab=94.30 E-value=0.094 Score=61.87 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=22.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
.++||+||+|+|||+|++.+++.+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999999887
No 492
>PRK14526 adenylate kinase; Provisional
Probab=94.27 E-value=0.043 Score=59.90 Aligned_cols=29 Identities=34% Similarity=0.696 Sum_probs=26.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~ 1014 (1163)
.++|+||||+|||++++.||..++++++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 48999999999999999999999877654
No 493
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.25 E-value=0.089 Score=59.67 Aligned_cols=68 Identities=26% Similarity=0.355 Sum_probs=37.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc--c-cc-ccchHHHHHHHHH----HHhccCCeEEEEcccccc
Q 001076 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT--S-KW-FGEGEKYVKAVFS----LASKIAPSVVFVDEVDSM 1055 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~--s-~~-~Ge~E~~Ir~lF~----~A~k~~PsILfIDEID~L 1055 (1163)
|+|+|-||+|||++|+.|+..+ +..++.++-..+. . .| -...|+.++..+. .+- ....||++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~l-s~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERAL-SKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHH-TT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhh-ccCeEEEEeCCchH
Confidence 7999999999999999998876 6777777744433 1 11 1233555554332 222 23478889988754
No 494
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=94.23 E-value=0.14 Score=58.65 Aligned_cols=85 Identities=22% Similarity=0.257 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHH
Q 001076 954 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVK 1033 (1163)
Q Consensus 954 leevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~Ge~E~~Ir 1033 (1163)
..+.++-+.+++-..+... ....+-++|+|+.|+|||++...|...+|-..+.+..+..+.. .+..
T Consensus 54 d~~~~~~l~~~lg~~L~~~--------~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~-~~~~----- 119 (304)
T TIGR01613 54 DNELIEYLQRVIGYSLTGN--------YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNE-FQEH----- 119 (304)
T ss_pred CHHHHHHHHHHHhHHhcCC--------CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhh-ccCC-----
Confidence 3455666666665433321 1223568999999999999999998888765543332222222 1110
Q ss_pred HHHHHHhccCCeEEEEcccc
Q 001076 1034 AVFSLASKIAPSVVFVDEVD 1053 (1163)
Q Consensus 1034 ~lF~~A~k~~PsILfIDEID 1053 (1163)
-|..+.-...-++++||++
T Consensus 120 -~f~~a~l~gk~l~~~~E~~ 138 (304)
T TIGR01613 120 -RFGLARLEGKRAVIGDEVQ 138 (304)
T ss_pred -CchhhhhcCCEEEEecCCC
Confidence 1444444455788999986
No 495
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.23 E-value=0.15 Score=53.34 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=28.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~se 1019 (1163)
.-+.|.|+||+|||++|+.|+..+ +..+..++...
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 468999999999999999999887 44566666543
No 496
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=94.19 E-value=0.42 Score=49.69 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVAT 1006 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~ 1006 (1163)
+.++|+||.|+|||.+.++++-
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999753
No 497
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=94.16 E-value=0.081 Score=61.47 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=29.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 1018 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~s 1018 (1163)
..|.|.|++|+|||+|++.|+..++.+++.--..
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R 196 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAR 196 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhH
Confidence 4799999999999999999999999988654433
No 498
>PLN02199 shikimate kinase
Probab=94.16 E-value=0.048 Score=62.38 Aligned_cols=32 Identities=28% Similarity=0.519 Sum_probs=30.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
.+|+|.|.+|+|||++++.+|+.+|++|+..|
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 58999999999999999999999999998877
No 499
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.15 E-value=0.097 Score=61.64 Aligned_cols=69 Identities=17% Similarity=0.210 Sum_probs=43.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC------CcEEEEec-ccccccc------------ccchHHHHHHHHHHHhccCCe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG------ANFINISM-SSITSKW------------FGEGEKYVKAVFSLASKIAPS 1045 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg------~pfi~Id~-seL~s~~------------~Ge~E~~Ir~lF~~A~k~~Ps 1045 (1163)
.-||++||+|+|||+++++++..+. ..++.+.- .++.-.. .+............+.+..|.
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd 214 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKPH 214 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCCC
Confidence 4599999999999999999998762 23433321 1111000 111111234455567788999
Q ss_pred EEEEcccc
Q 001076 1046 VVFVDEVD 1053 (1163)
Q Consensus 1046 ILfIDEID 1053 (1163)
+|++.|+.
T Consensus 215 ~i~vGEiR 222 (358)
T TIGR02524 215 AILVGEAR 222 (358)
T ss_pred EEeeeeeC
Confidence 99999985
No 500
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.15 E-value=0.12 Score=57.94 Aligned_cols=110 Identities=15% Similarity=0.222 Sum_probs=60.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccccc---------cccccc------------------hH
Q 001076 986 GILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSIT---------SKWFGE------------------GE 1029 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eL---------g~pfi~Id~seL~---------s~~~Ge------------------~E 1029 (1163)
=.=|+||||+|||.|+-.+|-.. +..+++||...-+ ..+--. -.
T Consensus 40 itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~ 119 (256)
T PF08423_consen 40 ITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELL 119 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHH
T ss_pred EEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHH
Confidence 36799999999999999887654 3457888864411 110000 11
Q ss_pred HHHHHHHHHHhccCCeEEEEccccccccCCCCc-chHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeC
Q 001076 1030 KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP-GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1097 (1163)
Q Consensus 1030 ~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~-~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN 1097 (1163)
..+..+-.......-.+|+||-|-.++...... .....-...+..++..+..+..+ .++.||.|..
T Consensus 120 ~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~~--~~iaVvvTNq 186 (256)
T PF08423_consen 120 ELLEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLARK--YNIAVVVTNQ 186 (256)
T ss_dssp HHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHHH--TT-EEEEEEE
T ss_pred HHHHHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHh--CCceEEeece
Confidence 122222223334567899999999988533211 11111123444555445444333 5677776653
Done!