Query 001076
Match_columns 1163
No_of_seqs 590 out of 2985
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 09:49:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001076.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001076hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 1.5E-57 5.2E-62 563.9 9.8 431 644-1162 239-691 (806)
2 4b4t_J 26S protease regulatory 100.0 2.8E-38 9.4E-43 365.1 24.9 216 944-1162 143-362 (405)
3 4b4t_I 26S protease regulatory 100.0 2.1E-37 7.3E-42 358.9 19.7 217 943-1162 176-396 (437)
4 4b4t_H 26S protease regulatory 100.0 1.1E-36 3.7E-41 355.9 23.2 217 943-1162 203-423 (467)
5 4b4t_M 26S protease regulatory 100.0 6.6E-37 2.3E-41 357.6 20.8 218 942-1162 174-395 (434)
6 4b4t_L 26S protease subunit RP 100.0 9.1E-37 3.1E-41 356.7 20.4 217 943-1162 175-395 (437)
7 4b4t_K 26S protease regulatory 100.0 4.1E-36 1.4E-40 350.6 22.5 217 943-1162 166-387 (428)
8 1ypw_A Transitional endoplasmi 100.0 2.4E-38 8.4E-43 396.0 -0.8 430 645-1162 240-691 (806)
9 3cf2_A TER ATPase, transitiona 100.0 8.7E-33 3E-37 343.0 15.2 215 944-1162 199-415 (806)
10 1xwi_A SKD1 protein; VPS4B, AA 100.0 3.7E-30 1.3E-34 290.2 25.2 215 944-1162 7-223 (322)
11 3eie_A Vacuolar protein sortin 100.0 1.7E-29 5.7E-34 283.9 21.2 215 944-1162 13-228 (322)
12 2qp9_X Vacuolar protein sortin 100.0 4.6E-29 1.6E-33 284.8 20.8 218 941-1162 43-261 (355)
13 3cf0_A Transitional endoplasmi 100.0 4.4E-29 1.5E-33 278.2 15.1 216 944-1162 10-229 (301)
14 2zan_A Vacuolar protein sortin 100.0 2.1E-28 7.3E-33 287.3 20.4 219 940-1162 125-345 (444)
15 2x8a_A Nuclear valosin-contain 100.0 3.8E-28 1.3E-32 268.2 17.7 214 945-1162 6-226 (274)
16 3d8b_A Fidgetin-like protein 1 99.9 1.1E-26 3.7E-31 265.1 22.6 216 944-1162 79-295 (357)
17 2ce7_A Cell division protein F 99.9 9.9E-27 3.4E-31 275.2 21.9 216 943-1162 10-229 (476)
18 3h4m_A Proteasome-activating n 99.9 2.5E-26 8.4E-31 251.5 22.4 215 945-1162 13-231 (285)
19 1lv7_A FTSH; alpha/beta domain 99.9 2.2E-26 7.5E-31 249.1 20.9 216 943-1162 6-225 (257)
20 3vfd_A Spastin; ATPase, microt 99.9 1.8E-26 6.1E-31 265.7 21.5 217 943-1162 109-326 (389)
21 3b9p_A CG5977-PA, isoform A; A 99.9 3.4E-26 1.2E-30 252.1 22.1 218 942-1162 14-233 (297)
22 2qz4_A Paraplegin; AAA+, SPG7, 99.9 6.1E-26 2.1E-30 244.4 20.1 214 945-1162 2-222 (262)
23 3hu3_A Transitional endoplasmi 99.9 2.5E-26 8.6E-31 273.0 18.6 213 946-1162 201-415 (489)
24 1ixz_A ATP-dependent metallopr 99.9 2.3E-24 7.9E-29 232.9 20.6 217 942-1162 9-229 (254)
25 2dhr_A FTSH; AAA+ protein, hex 99.9 1.1E-24 3.9E-29 259.0 17.6 215 944-1162 26-244 (499)
26 2r62_A Cell division protease 99.9 1.7E-26 5.7E-31 250.9 -1.8 219 941-1162 3-226 (268)
27 1iy2_A ATP-dependent metallopr 99.9 4.7E-23 1.6E-27 226.3 23.0 215 944-1162 35-253 (278)
28 1ypw_A Transitional endoplasmi 99.9 3E-22 1E-26 251.0 16.2 215 944-1162 199-415 (806)
29 3t15_A Ribulose bisphosphate c 99.9 3.4E-22 1.2E-26 222.3 14.7 174 981-1160 33-222 (293)
30 1r6b_X CLPA protein; AAA+, N-t 99.9 1.9E-21 6.5E-26 241.8 18.3 418 642-1161 206-707 (758)
31 4b4t_J 26S protease regulatory 99.9 5.9E-22 2E-26 229.2 11.4 232 449-916 143-391 (405)
32 4b4t_I 26S protease regulatory 99.8 1.3E-21 4.3E-26 227.3 11.5 234 447-916 175-425 (437)
33 4b4t_M 26S protease regulatory 99.8 2.7E-21 9.1E-26 226.2 10.1 234 447-916 174-424 (434)
34 3pxi_A Negative regulator of g 99.8 3.1E-20 1E-24 231.2 19.6 192 949-1161 491-716 (758)
35 4b4t_H 26S protease regulatory 99.8 9E-21 3.1E-25 222.0 12.8 232 448-915 203-451 (467)
36 4b4t_L 26S protease subunit RP 99.8 7.2E-21 2.4E-25 222.7 10.4 233 448-916 175-424 (437)
37 4b4t_K 26S protease regulatory 99.8 3.3E-20 1.1E-24 216.8 13.0 231 447-913 165-413 (428)
38 1qvr_A CLPB protein; coiled co 99.8 2.7E-18 9.3E-23 216.5 21.1 197 949-1162 558-812 (854)
39 2c9o_A RUVB-like 1; hexameric 99.8 1.1E-20 3.9E-25 222.3 -2.4 199 945-1162 33-260 (456)
40 3syl_A Protein CBBX; photosynt 99.7 1.6E-17 5.5E-22 183.4 17.1 202 950-1162 32-255 (309)
41 1ofh_A ATP-dependent HSL prote 99.7 6.3E-17 2.2E-21 177.7 15.8 212 950-1161 16-265 (310)
42 1gxc_A CHK2, CDS1, serine/thre 99.7 5.4E-17 1.9E-21 164.3 13.2 108 132-240 28-145 (149)
43 1d2n_A N-ethylmaleimide-sensit 99.7 6.8E-17 2.3E-21 176.4 11.9 202 950-1161 34-241 (272)
44 3pfi_A Holliday junction ATP-d 99.7 1.1E-15 3.6E-20 171.4 18.8 180 946-1154 26-220 (338)
45 1lgp_A Cell cycle checkpoint p 99.7 2.6E-16 8.8E-21 152.5 10.2 105 132-239 2-114 (116)
46 3uk6_A RUVB-like 2; hexameric 99.6 2E-15 6.9E-20 170.7 18.0 192 945-1162 40-303 (368)
47 3hws_A ATP-dependent CLP prote 99.6 3.9E-16 1.4E-20 177.7 12.2 212 951-1162 17-315 (363)
48 1xwi_A SKD1 protein; VPS4B, AA 99.6 1.6E-15 5.4E-20 171.0 14.3 138 682-883 86-234 (322)
49 1jbk_A CLPB protein; beta barr 99.6 1.2E-15 4.2E-20 153.6 10.5 158 946-1128 19-194 (195)
50 3m6a_A ATP-dependent protease 99.6 1.3E-15 4.4E-20 183.4 12.1 166 949-1132 81-266 (543)
51 1hqc_A RUVB; extended AAA-ATPa 99.6 1.2E-14 4E-19 161.4 17.1 189 946-1155 9-205 (324)
52 3eie_A Vacuolar protein sortin 99.6 4.7E-15 1.6E-19 166.5 12.0 219 447-884 11-240 (322)
53 4fcw_A Chaperone protein CLPB; 99.6 9.8E-15 3.4E-19 161.1 14.1 196 950-1162 18-271 (311)
54 1g41_A Heat shock protein HSLU 99.6 1.1E-15 3.8E-20 179.3 6.6 167 950-1128 16-188 (444)
55 3u61_B DNA polymerase accessor 99.6 3.7E-14 1.3E-18 158.2 18.5 179 945-1159 22-214 (324)
56 2qp9_X Vacuolar protein sortin 99.6 6.7E-15 2.3E-19 168.0 12.5 229 435-883 33-272 (355)
57 2chg_A Replication factor C sm 99.6 2.3E-13 7.9E-18 140.1 21.5 174 946-1156 14-199 (226)
58 1njg_A DNA polymerase III subu 99.5 3.2E-13 1.1E-17 140.3 21.9 179 946-1161 20-227 (250)
59 1l8q_A Chromosomal replication 99.5 1.3E-13 4.4E-18 154.2 18.9 188 945-1160 7-206 (324)
60 2p65_A Hypothetical protein PF 99.5 1.6E-14 5.5E-19 145.6 10.5 150 946-1120 19-187 (187)
61 2x8a_A Nuclear valosin-contain 99.5 2.4E-14 8.4E-19 158.0 12.1 167 682-916 84-266 (274)
62 3pxg_A Negative regulator of g 99.5 2.1E-14 7.3E-19 169.7 12.4 170 946-1155 177-366 (468)
63 2zan_A Vacuolar protein sortin 99.5 1.3E-14 4.5E-19 170.4 9.9 229 435-883 116-356 (444)
64 1r6b_X CLPA protein; AAA+, N-t 99.5 3.6E-14 1.2E-18 176.5 14.1 185 946-1154 183-389 (758)
65 3pvs_A Replication-associated 99.5 1.2E-13 4.2E-18 162.6 17.1 173 946-1158 23-212 (447)
66 1um8_A ATP-dependent CLP prote 99.5 1.6E-13 5.5E-18 156.8 17.3 212 950-1161 22-331 (376)
67 1qvr_A CLPB protein; coiled co 99.5 3.8E-14 1.3E-18 178.9 12.9 183 946-1153 167-371 (854)
68 1sxj_A Activator 1 95 kDa subu 99.5 8.4E-14 2.9E-18 166.4 14.9 199 945-1158 35-249 (516)
69 2v1u_A Cell division control p 99.5 3.8E-13 1.3E-17 151.5 18.7 189 948-1155 18-243 (387)
70 2z4s_A Chromosomal replication 99.5 2.7E-13 9.2E-18 159.2 17.6 190 945-1160 101-304 (440)
71 2qby_B CDC6 homolog 3, cell di 99.5 6.5E-13 2.2E-17 150.3 19.5 177 949-1151 20-232 (384)
72 3pxi_A Negative regulator of g 99.5 8.4E-14 2.9E-18 173.5 12.4 168 946-1153 177-364 (758)
73 2r44_A Uncharacterized protein 99.5 1.7E-13 5.8E-18 153.4 13.2 160 949-1134 27-200 (331)
74 2chq_A Replication factor C sm 99.5 6.4E-13 2.2E-17 146.2 16.7 180 944-1156 12-199 (319)
75 1sxj_B Activator 1 37 kDa subu 99.5 1.1E-12 3.7E-17 144.6 18.5 178 945-1159 17-207 (323)
76 2jqj_A DNA damage response pro 99.5 2.8E-13 9.7E-18 137.3 12.7 110 127-240 11-126 (151)
77 3bos_A Putative DNA replicatio 99.5 2.5E-12 8.5E-17 135.1 20.3 178 946-1160 25-215 (242)
78 1g6g_A Protein kinase RAD53; b 99.4 3.4E-13 1.2E-17 132.9 12.2 100 132-235 3-119 (127)
79 1sxj_D Activator 1 41 kDa subu 99.4 9.3E-13 3.2E-17 147.4 16.9 178 945-1159 33-233 (353)
80 1g8p_A Magnesium-chelatase 38 99.4 5.6E-13 1.9E-17 149.2 14.6 165 945-1130 20-230 (350)
81 3i6u_A CDS1, serine/threonine- 99.4 3.6E-13 1.2E-17 156.0 12.0 109 131-240 7-125 (419)
82 1jr3_A DNA polymerase III subu 99.4 3.5E-12 1.2E-16 143.8 19.5 174 946-1155 13-215 (373)
83 1iqp_A RFCS; clamp loader, ext 99.4 3.6E-12 1.2E-16 140.7 18.7 180 945-1157 21-208 (327)
84 2qby_A CDC6 homolog 1, cell di 99.4 7.1E-12 2.4E-16 140.8 19.6 190 947-1157 18-241 (386)
85 3te6_A Regulatory protein SIR3 99.4 3.2E-12 1.1E-16 144.3 16.5 159 951-1134 22-213 (318)
86 3b9p_A CG5977-PA, isoform A; A 99.4 3.7E-12 1.2E-16 140.2 16.1 257 437-916 5-274 (297)
87 2bjv_A PSP operon transcriptio 99.4 1.2E-12 4.2E-17 142.0 12.0 160 946-1133 3-195 (265)
88 3d8b_A Fidgetin-like protein 1 99.4 4.3E-12 1.5E-16 144.8 16.7 255 439-916 70-336 (357)
89 1fnn_A CDC6P, cell division co 99.4 2.1E-11 7.1E-16 137.9 21.5 182 948-1151 16-228 (389)
90 1sxj_E Activator 1 40 kDa subu 99.4 9.6E-12 3.3E-16 139.8 17.4 181 945-1159 10-235 (354)
91 3hu3_A Transitional endoplasmi 99.3 1.8E-13 6.2E-18 162.8 3.4 230 644-958 239-486 (489)
92 1in4_A RUVB, holliday junction 99.3 3.4E-11 1.2E-15 136.0 20.7 181 946-1155 22-217 (334)
93 4h87_A Kanadaptin; FHA domain 99.3 4.3E-12 1.5E-16 125.8 10.5 87 146-234 34-129 (130)
94 3vfd_A Spastin; ATPase, microt 99.3 4.6E-12 1.6E-16 145.8 11.9 85 435-527 97-181 (389)
95 1ojl_A Transcriptional regulat 99.3 2.7E-12 9.4E-17 143.5 8.9 157 950-1134 3-192 (304)
96 1sxj_C Activator 1 40 kDa subu 99.3 8.5E-11 2.9E-15 132.5 18.9 175 945-1156 21-207 (340)
97 1a5t_A Delta prime, HOLB; zinc 99.3 2.2E-10 7.5E-15 129.4 21.9 170 953-1159 6-203 (334)
98 3nbx_X ATPase RAVA; AAA+ ATPas 99.2 8.5E-12 2.9E-16 148.8 9.8 160 950-1132 23-196 (500)
99 3co5_A Putative two-component 99.2 3.4E-12 1.2E-16 126.9 5.4 131 950-1119 5-140 (143)
100 2pie_A E3 ubiquitin-protein li 99.2 1.9E-11 6.5E-16 122.2 10.7 101 131-236 7-117 (138)
101 1g3g_A Protien kinase SPK1; FH 99.2 4.3E-11 1.5E-15 123.1 13.6 101 131-235 30-147 (164)
102 3n70_A Transport activator; si 99.2 1.1E-11 3.7E-16 123.4 8.7 132 950-1120 2-143 (145)
103 2c9o_A RUVB-like 1; hexameric 99.2 1.8E-12 6.3E-17 152.5 2.1 98 1044-1158 296-407 (456)
104 3va4_A Mediator of DNA damage 99.2 5.4E-11 1.8E-15 118.3 10.8 102 129-236 19-126 (132)
105 1lv7_A FTSH; alpha/beta domain 99.2 9E-11 3.1E-15 126.7 13.0 73 446-526 4-77 (257)
106 3cf0_A Transitional endoplasmi 99.2 1E-12 3.5E-17 146.2 -2.7 171 644-884 50-241 (301)
107 1qu5_A Protein kinase SPK1; FH 99.2 5.9E-11 2E-15 124.0 9.5 101 133-234 28-145 (182)
108 3h4m_A Proteasome-activating n 99.2 1E-10 3.5E-15 127.7 11.7 71 449-526 12-83 (285)
109 2dhr_A FTSH; AAA+ protein, hex 99.1 5.6E-11 1.9E-15 141.7 8.9 117 703-882 122-254 (499)
110 1uht_A Expressed protein; FHA 99.1 1.8E-10 6E-15 111.9 10.4 93 130-227 8-105 (118)
111 3f9v_A Minichromosome maintena 99.1 1.8E-11 6E-16 149.0 3.0 173 950-1134 296-492 (595)
112 2ce7_A Cell division protein F 99.1 2.5E-11 8.5E-16 144.0 3.9 170 645-882 51-239 (476)
113 2qz4_A Paraplegin; AAA+, SPG7, 99.1 3.7E-10 1.3E-14 121.2 12.6 70 450-527 2-72 (262)
114 2gno_A DNA polymerase III, gam 99.1 1.1E-09 3.8E-14 122.9 16.6 142 953-1132 1-152 (305)
115 1dmz_A Protein (protein kinase 99.1 2.9E-10 1E-14 116.2 10.3 100 134-234 5-121 (158)
116 1r21_A Antigen KI-67; beta san 99.1 2.7E-10 9.3E-15 112.2 9.0 96 131-236 9-108 (128)
117 3hx1_A SLR1951 protein; P74513 99.1 3.6E-10 1.2E-14 112.1 9.8 84 146-236 24-114 (131)
118 3els_A PRE-mRNA leakage protei 99.1 3.7E-10 1.3E-14 115.5 9.9 88 146-234 49-156 (158)
119 3po8_A RV0020C protein, putati 99.0 6.8E-10 2.3E-14 104.7 10.8 74 144-225 15-89 (100)
120 2xt9_B Putative signal transdu 99.0 1.2E-09 4.1E-14 105.7 11.7 84 143-237 22-106 (115)
121 2csw_A Ubiquitin ligase protei 99.0 3.7E-10 1.3E-14 113.8 8.3 99 132-235 16-124 (145)
122 2jpe_A Nuclear inhibitor of pr 99.0 2.4E-10 8.3E-15 114.4 6.1 85 146-234 48-135 (140)
123 1g41_A Heat shock protein HSLU 99.0 6.7E-09 2.3E-13 122.0 18.3 85 1045-1129 252-346 (444)
124 2kb3_A Oxoglutarate dehydrogen 99.0 1.9E-09 6.5E-14 108.5 11.5 81 145-236 59-140 (143)
125 1mzk_A Kinase associated prote 99.0 1E-09 3.6E-14 109.7 8.8 79 153-237 33-120 (139)
126 3cmw_A Protein RECA, recombina 99.0 8.6E-10 2.9E-14 146.1 10.6 153 943-1098 1014-1217(1706)
127 2r62_A Cell division protease 98.9 1.1E-10 3.7E-15 126.5 1.0 71 444-522 1-72 (268)
128 2kfu_A RV1827 PThr 22; FHA dom 98.9 3.8E-09 1.3E-13 108.4 12.0 82 145-237 68-150 (162)
129 1w5s_A Origin recognition comp 98.9 9.8E-09 3.4E-13 117.0 15.9 188 949-1151 22-250 (412)
130 3elv_A PRE-mRNA leakage protei 98.9 2.6E-09 9E-14 113.0 9.8 81 146-227 96-193 (205)
131 3gqs_A Adenylate cyclase-like 98.9 5.2E-09 1.8E-13 99.8 10.1 81 146-235 18-101 (106)
132 4ejq_A Kinesin-like protein KI 98.9 6.1E-09 2.1E-13 106.0 10.8 95 136-235 40-143 (154)
133 3oun_A Putative uncharacterize 98.9 6.2E-09 2.1E-13 106.2 10.2 72 146-225 79-151 (157)
134 1wln_A Afadin; beta sandwich, 98.8 1.1E-08 3.9E-13 99.7 10.8 81 147-236 31-114 (120)
135 3k1j_A LON protease, ATP-depen 98.8 7.6E-09 2.6E-13 126.0 10.2 49 945-1009 37-85 (604)
136 4akg_A Glutathione S-transfera 98.8 2.1E-08 7E-13 138.3 14.7 139 985-1134 1268-1433(2695)
137 2ff4_A Probable regulatory pro 98.8 2E-08 6.9E-13 116.0 12.4 95 130-235 285-380 (388)
138 3fm8_A Kinesin-like protein KI 98.8 4.8E-08 1.6E-12 96.1 12.1 98 129-234 23-122 (124)
139 1ny5_A Transcriptional regulat 98.7 2.6E-08 8.8E-13 115.1 11.0 164 950-1134 138-327 (387)
140 3ec2_A DNA replication protein 98.7 2.1E-08 7.2E-13 102.4 8.8 98 945-1055 6-112 (180)
141 3uv0_A Mutator 2, isoform B; F 98.6 1.2E-07 4.1E-12 89.1 10.0 70 143-220 11-81 (102)
142 2fna_A Conserved hypothetical 98.6 6.7E-07 2.3E-11 99.2 17.8 177 947-1155 11-244 (357)
143 2w58_A DNAI, primosome compone 98.6 6.8E-08 2.3E-12 100.1 9.1 100 944-1055 20-127 (202)
144 1ixz_A ATP-dependent metallopr 98.6 6E-09 2E-13 112.2 0.7 170 645-882 51-239 (254)
145 2qen_A Walker-type ATPase; unk 98.6 1.2E-06 4.2E-11 96.9 18.7 181 947-1155 10-240 (350)
146 2kjq_A DNAA-related protein; s 98.6 2.3E-07 8E-12 93.3 11.6 106 984-1118 36-147 (149)
147 2brf_A Bifunctional polynucleo 98.5 3.1E-07 1E-11 88.4 10.1 95 134-234 9-105 (110)
148 3dzd_A Transcriptional regulat 98.5 1.7E-07 5.8E-12 107.6 9.7 164 950-1134 130-318 (368)
149 3kt9_A Aprataxin; FHA domain, 98.5 4.4E-07 1.5E-11 86.3 10.7 95 134-234 4-99 (102)
150 1iy2_A ATP-dependent metallopr 98.5 4.9E-08 1.7E-12 106.9 4.1 170 645-882 75-263 (278)
151 3t15_A Ribulose bisphosphate c 98.4 1.4E-08 4.9E-13 112.7 -1.5 157 643-870 36-222 (293)
152 1yj5_C 5' polynucleotide kinas 98.4 1.1E-06 3.9E-11 87.4 10.6 97 133-235 8-106 (143)
153 2krk_A 26S protease regulatory 98.4 1.7E-07 5.8E-12 86.4 3.5 75 826-916 9-83 (86)
154 4akg_A Glutathione S-transfera 98.4 2.1E-06 7E-11 118.8 15.5 131 985-1128 646-789 (2695)
155 2vhj_A Ntpase P4, P4; non- hyd 98.3 3.5E-07 1.2E-11 103.4 5.5 112 985-1105 124-241 (331)
156 1ujx_A Polynucleotide kinase 3 98.3 7.6E-07 2.6E-11 86.6 6.7 96 133-234 15-112 (119)
157 3f8t_A Predicted ATPase involv 98.3 4.8E-07 1.6E-11 106.6 6.1 152 951-1122 215-384 (506)
158 2r2a_A Uncharacterized protein 98.3 8.2E-07 2.8E-11 93.8 7.2 129 985-1123 6-157 (199)
159 2qgz_A Helicase loader, putati 98.2 9.6E-07 3.3E-11 99.0 7.1 70 984-1055 152-226 (308)
160 4egx_A Kinesin-like protein KI 98.2 5.5E-06 1.9E-10 86.7 10.7 96 136-236 70-174 (184)
161 3kw6_A 26S protease regulatory 98.2 8.1E-07 2.8E-11 79.8 3.2 72 826-914 1-73 (78)
162 3vlf_B 26S protease regulatory 98.1 1.7E-06 5.7E-11 79.9 4.3 71 829-916 2-73 (88)
163 1tue_A Replication protein E1; 98.0 1.2E-05 4.1E-10 85.6 9.6 126 985-1137 59-210 (212)
164 3aji_B S6C, proteasome (prosom 98.0 3E-06 1E-10 76.9 4.3 72 829-916 2-73 (83)
165 3kw6_A 26S protease regulatory 98.0 3.1E-06 1.1E-10 76.0 4.3 46 1117-1162 1-46 (78)
166 3vkg_A Dynein heavy chain, cyt 98.0 1.7E-05 5.7E-10 110.7 13.4 139 985-1134 1305-1471(3245)
167 2krk_A 26S protease regulatory 97.9 3.7E-06 1.3E-10 77.4 3.1 47 1116-1162 8-54 (86)
168 3vkg_A Dynein heavy chain, cyt 97.8 7.8E-05 2.7E-09 104.2 15.2 131 985-1128 605-749 (3245)
169 1u0j_A DNA replication protein 97.8 2.6E-05 9E-10 86.0 8.0 119 984-1131 104-250 (267)
170 3huf_A DNA repair and telomere 97.8 5.5E-05 1.9E-09 84.5 9.6 81 146-228 15-107 (325)
171 3cmu_A Protein RECA, recombina 97.7 5.6E-05 1.9E-09 102.0 10.4 113 982-1096 1425-1561(2050)
172 2dzn_B 26S protease regulatory 97.7 2.2E-05 7.7E-10 71.2 3.9 68 831-914 1-68 (82)
173 4a0e_A YSCD, type III secretio 97.6 0.00015 5E-09 71.1 8.7 77 142-226 14-91 (123)
174 3vlf_B 26S protease regulatory 97.6 2.7E-05 9.2E-10 71.8 3.3 43 1120-1162 2-44 (88)
175 1wv3_A Similar to DNA segregat 97.5 0.00011 3.6E-09 79.9 7.6 65 151-223 91-159 (238)
176 1ye8_A Protein THEP1, hypothet 97.5 0.00052 1.8E-08 70.9 12.5 28 986-1013 2-29 (178)
177 3cmw_A Protein RECA, recombina 97.5 0.00012 4.2E-09 97.7 9.7 76 985-1060 1432-1526(1706)
178 1jr3_D DNA polymerase III, del 97.5 0.00081 2.8E-08 75.5 14.1 142 985-1152 19-176 (343)
179 3aji_B S6C, proteasome (prosom 97.5 5.2E-05 1.8E-09 68.7 3.5 43 1120-1162 2-44 (83)
180 1z6t_A APAF-1, apoptotic prote 97.3 0.003 1E-07 75.8 16.3 165 949-1154 124-321 (591)
181 3syl_A Protein CBBX; photosynt 97.2 0.00013 4.6E-09 80.0 3.9 131 645-822 69-216 (309)
182 2cvh_A DNA repair and recombin 97.2 0.0024 8.1E-08 66.1 12.1 37 983-1019 19-55 (220)
183 1xp8_A RECA protein, recombina 97.1 0.003 1E-07 72.6 13.2 75 983-1057 73-166 (366)
184 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.0045 1.5E-07 64.2 13.1 34 984-1017 23-59 (235)
185 2r8r_A Sensor protein; KDPD, P 97.0 0.0037 1.3E-07 67.4 12.3 125 985-1126 7-172 (228)
186 3sfz_A APAF-1, apoptotic pepti 97.0 0.0097 3.3E-07 76.8 17.6 166 949-1153 124-320 (1249)
187 1n0w_A DNA repair protein RAD5 96.9 0.0027 9.2E-08 66.8 10.1 75 984-1058 24-134 (243)
188 2orw_A Thymidine kinase; TMTK, 96.9 0.00082 2.8E-08 69.7 5.7 30 986-1015 5-37 (184)
189 2zr9_A Protein RECA, recombina 96.9 0.004 1.4E-07 71.0 11.8 74 983-1056 60-152 (349)
190 1qhx_A CPT, protein (chloramph 96.9 0.0016 5.6E-08 65.4 7.6 34 985-1018 4-37 (178)
191 3hr8_A Protein RECA; alpha and 96.9 0.0035 1.2E-07 71.8 11.0 75 983-1057 60-153 (356)
192 1svm_A Large T antigen; AAA+ f 96.8 0.00029 9.8E-09 81.4 1.9 63 983-1057 168-230 (377)
193 2dzn_B 26S protease regulatory 96.8 0.0001 3.5E-09 66.9 -1.8 41 1122-1162 1-41 (82)
194 3trf_A Shikimate kinase, SK; a 96.7 0.00093 3.2E-08 67.8 3.9 33 984-1016 5-37 (185)
195 1d2n_A N-ethylmaleimide-sensit 96.6 0.00019 6.5E-09 77.9 -1.6 98 642-747 63-177 (272)
196 2iut_A DNA translocase FTSK; n 96.6 0.025 8.5E-07 68.5 15.9 75 1044-1129 344-420 (574)
197 1u94_A RECA protein, recombina 96.6 0.0089 3E-07 68.4 11.5 75 983-1057 62-155 (356)
198 2a5y_B CED-4; apoptosis; HET: 96.6 0.023 8E-07 68.1 15.6 165 952-1153 131-329 (549)
199 2b8t_A Thymidine kinase; deoxy 96.5 0.012 4.1E-07 63.1 11.7 70 985-1055 13-101 (223)
200 3upu_A ATP-dependent DNA helic 96.5 0.0045 1.5E-07 72.8 9.0 23 986-1008 47-69 (459)
201 1v5w_A DMC1, meiotic recombina 96.5 0.0078 2.7E-07 68.2 10.5 75 983-1057 121-233 (343)
202 3cmu_A Protein RECA, recombina 96.5 0.0041 1.4E-07 84.3 9.3 77 981-1057 729-824 (2050)
203 2z43_A DNA repair and recombin 96.5 0.0049 1.7E-07 69.2 8.5 75 983-1057 106-217 (324)
204 3vaa_A Shikimate kinase, SK; s 96.4 0.0018 6.1E-08 67.1 4.0 33 984-1016 25-57 (199)
205 3uk6_A RUVB-like 2; hexameric 96.4 0.0019 6.5E-08 72.6 4.4 125 704-882 189-313 (368)
206 3kb2_A SPBC2 prophage-derived 96.3 0.0023 7.8E-08 63.6 4.2 31 986-1016 3-33 (173)
207 2ehv_A Hypothetical protein PH 96.3 0.017 5.8E-07 60.8 11.2 35 983-1017 29-67 (251)
208 3io5_A Recombination and repai 96.3 0.01 3.5E-07 67.2 9.7 73 986-1058 30-126 (333)
209 2dr3_A UPF0273 protein PH0284; 96.3 0.016 5.5E-07 60.9 10.5 35 983-1017 22-59 (247)
210 2iyv_A Shikimate kinase, SK; t 96.2 0.0022 7.6E-08 65.0 3.6 31 986-1016 4-34 (184)
211 2ius_A DNA translocase FTSK; n 96.2 0.046 1.6E-06 65.5 15.2 75 1045-1130 299-375 (512)
212 4a74_A DNA repair and recombin 96.2 0.017 5.7E-07 60.1 10.0 26 983-1008 24-49 (231)
213 1via_A Shikimate kinase; struc 96.2 0.0023 7.9E-08 64.6 3.4 31 986-1016 6-36 (175)
214 3iij_A Coilin-interacting nucl 96.2 0.0027 9.3E-08 64.3 3.9 32 985-1016 12-43 (180)
215 3dm5_A SRP54, signal recogniti 96.2 0.031 1E-06 65.8 13.1 73 983-1055 99-194 (443)
216 2p5t_B PEZT; postsegregational 96.1 0.014 4.9E-07 62.8 9.4 38 983-1020 31-68 (253)
217 1zuh_A Shikimate kinase; alpha 96.1 0.0029 9.8E-08 63.3 3.7 32 985-1016 8-39 (168)
218 2rhm_A Putative kinase; P-loop 96.1 0.0031 1.1E-07 64.0 3.9 32 985-1016 6-37 (193)
219 3lda_A DNA repair protein RAD5 96.1 0.015 5E-07 67.7 9.9 76 983-1058 177-288 (400)
220 3m6a_A ATP-dependent protease 96.1 0.00038 1.3E-08 83.8 -3.6 50 698-748 169-235 (543)
221 1y63_A LMAJ004144AAA protein; 96.0 0.0032 1.1E-07 64.5 3.5 32 985-1016 11-43 (184)
222 1e6c_A Shikimate kinase; phosp 96.0 0.0034 1.2E-07 62.7 3.4 31 986-1016 4-34 (173)
223 3lw7_A Adenylate kinase relate 96.0 0.0033 1.1E-07 62.0 3.2 29 986-1015 3-31 (179)
224 1aky_A Adenylate kinase; ATP:A 96.0 0.0039 1.3E-07 65.4 3.9 32 984-1015 4-35 (220)
225 1tev_A UMP-CMP kinase; ploop, 96.0 0.0038 1.3E-07 63.2 3.7 31 985-1015 4-34 (196)
226 2cdn_A Adenylate kinase; phosp 96.0 0.0043 1.5E-07 64.0 4.2 32 985-1016 21-52 (201)
227 2ze6_A Isopentenyl transferase 96.0 0.0041 1.4E-07 67.4 4.2 32 986-1017 3-34 (253)
228 3pxg_A Negative regulator of g 95.9 0.00076 2.6E-08 79.7 -1.8 95 642-748 200-302 (468)
229 1vma_A Cell division protein F 95.9 0.073 2.5E-06 59.6 14.2 72 983-1054 103-197 (306)
230 1gvn_B Zeta; postsegregational 95.9 0.017 5.7E-07 63.9 8.9 36 984-1019 33-68 (287)
231 2c95_A Adenylate kinase 1; tra 95.9 0.0042 1.5E-07 63.1 3.8 32 985-1016 10-41 (196)
232 3bh0_A DNAB-like replicative h 95.9 0.052 1.8E-06 60.7 12.9 35 983-1017 67-104 (315)
233 3a4m_A L-seryl-tRNA(SEC) kinas 95.8 0.015 5.2E-07 63.0 7.9 36 985-1020 5-43 (260)
234 1kag_A SKI, shikimate kinase I 95.8 0.0062 2.1E-07 60.9 4.4 30 985-1014 5-34 (173)
235 2pt5_A Shikimate kinase, SK; a 95.7 0.0049 1.7E-07 61.3 3.5 31 986-1016 2-32 (168)
236 3t61_A Gluconokinase; PSI-biol 95.7 0.0065 2.2E-07 62.7 4.3 33 984-1016 18-50 (202)
237 2fz4_A DNA repair protein RAD2 95.7 0.032 1.1E-06 59.8 9.8 31 986-1016 110-140 (237)
238 2bwj_A Adenylate kinase 5; pho 95.7 0.0053 1.8E-07 62.6 3.5 32 985-1016 13-44 (199)
239 1pzn_A RAD51, DNA repair and r 95.7 0.028 9.7E-07 63.9 9.8 37 983-1019 130-175 (349)
240 3kl4_A SRP54, signal recogniti 95.6 0.13 4.4E-06 60.4 15.4 73 983-1055 96-191 (433)
241 3dl0_A Adenylate kinase; phosp 95.6 0.0054 1.9E-07 63.9 3.4 31 986-1016 2-32 (216)
242 1sxj_A Activator 1 95 kDa subu 95.6 0.22 7.5E-06 59.4 17.6 50 480-531 65-114 (516)
243 1qf9_A UMP/CMP kinase, protein 95.6 0.0058 2E-07 61.7 3.5 32 985-1016 7-38 (194)
244 3fb4_A Adenylate kinase; psych 95.6 0.0058 2E-07 63.6 3.5 31 986-1016 2-32 (216)
245 3cm0_A Adenylate kinase; ATP-b 95.6 0.0075 2.6E-07 61.0 4.3 31 985-1015 5-35 (186)
246 2r6a_A DNAB helicase, replicat 95.6 0.035 1.2E-06 65.2 10.5 35 983-1017 202-240 (454)
247 2zts_A Putative uncharacterize 95.6 0.057 2E-06 56.6 11.2 35 983-1017 29-67 (251)
248 3jvv_A Twitching mobility prot 95.6 0.017 5.8E-07 66.1 7.5 69 985-1053 124-206 (356)
249 1kht_A Adenylate kinase; phosp 95.6 0.0053 1.8E-07 62.0 3.0 30 985-1014 4-38 (192)
250 1ak2_A Adenylate kinase isoenz 95.6 0.007 2.4E-07 64.3 4.0 31 985-1015 17-47 (233)
251 2i3b_A HCR-ntpase, human cance 95.6 0.054 1.8E-06 56.4 10.6 23 986-1008 3-25 (189)
252 1zd8_A GTP:AMP phosphotransfer 95.5 0.006 2.1E-07 64.3 3.4 31 985-1015 8-38 (227)
253 1ukz_A Uridylate kinase; trans 95.5 0.0074 2.5E-07 62.1 3.9 32 985-1016 16-47 (203)
254 3tlx_A Adenylate kinase 2; str 95.5 0.0074 2.5E-07 64.9 4.0 34 983-1016 28-61 (243)
255 2i1q_A DNA repair and recombin 95.5 0.018 6.1E-07 64.2 7.2 74 984-1057 98-218 (322)
256 2vli_A Antibiotic resistance p 95.5 0.007 2.4E-07 61.0 3.4 29 985-1013 6-34 (183)
257 1nlf_A Regulatory protein REPA 95.5 0.055 1.9E-06 58.9 10.7 24 985-1008 31-54 (279)
258 2q6t_A DNAB replication FORK h 95.4 0.05 1.7E-06 63.6 11.1 36 983-1018 199-238 (444)
259 1ly1_A Polynucleotide kinase; 95.4 0.0073 2.5E-07 60.4 3.3 30 985-1014 3-33 (181)
260 1knq_A Gluconate kinase; ALFA/ 95.4 0.0096 3.3E-07 59.8 4.2 30 985-1014 9-38 (175)
261 3be4_A Adenylate kinase; malar 95.4 0.0069 2.3E-07 63.6 3.2 31 985-1015 6-36 (217)
262 2pbr_A DTMP kinase, thymidylat 95.4 0.013 4.4E-07 59.3 5.0 32 986-1017 2-36 (195)
263 1cr0_A DNA primase/helicase; R 95.4 0.064 2.2E-06 58.7 10.9 35 983-1017 34-72 (296)
264 1zp6_A Hypothetical protein AT 95.3 0.0086 2.9E-07 60.8 3.6 37 984-1020 9-45 (191)
265 3e1s_A Exodeoxyribonuclease V, 95.3 0.011 3.7E-07 71.8 5.0 32 985-1016 205-239 (574)
266 1g5t_A COB(I)alamin adenosyltr 95.3 0.097 3.3E-06 55.2 11.3 116 986-1117 30-178 (196)
267 1zak_A Adenylate kinase; ATP:A 95.2 0.0068 2.3E-07 63.6 2.5 31 985-1015 6-36 (222)
268 1e4v_A Adenylate kinase; trans 95.2 0.0095 3.2E-07 62.2 3.5 30 986-1015 2-31 (214)
269 2ga8_A Hypothetical 39.9 kDa p 95.2 0.011 3.6E-07 67.9 4.1 30 985-1014 25-54 (359)
270 2pez_A Bifunctional 3'-phospho 95.2 0.018 6.2E-07 58.2 5.4 36 984-1019 5-43 (179)
271 3sr0_A Adenylate kinase; phosp 95.1 0.014 4.9E-07 61.6 4.5 29 986-1014 2-30 (206)
272 4eun_A Thermoresistant glucoki 95.0 0.018 6.1E-07 59.6 4.9 31 984-1014 29-59 (200)
273 3bgw_A DNAB-like replicative h 95.0 0.098 3.3E-06 61.5 11.8 37 982-1018 195-234 (444)
274 3crm_A TRNA delta(2)-isopenten 95.0 0.014 4.9E-07 66.0 4.4 34 985-1018 6-39 (323)
275 1q57_A DNA primase/helicase; d 95.0 0.083 2.8E-06 62.7 11.2 36 983-1018 241-280 (503)
276 3umf_A Adenylate kinase; rossm 95.0 0.017 5.9E-07 61.7 4.8 31 984-1014 29-59 (217)
277 2eyu_A Twitching motility prot 95.0 0.035 1.2E-06 60.7 7.2 69 985-1053 26-108 (261)
278 2jaq_A Deoxyguanosine kinase; 94.9 0.017 5.7E-07 58.9 4.2 29 986-1014 2-30 (205)
279 2z0h_A DTMP kinase, thymidylat 94.8 0.023 7.7E-07 57.8 4.9 31 987-1017 3-36 (197)
280 1jbk_A CLPB protein; beta barr 94.8 0.036 1.2E-06 54.8 6.3 98 645-746 45-160 (195)
281 2if2_A Dephospho-COA kinase; a 94.8 0.013 4.3E-07 60.4 3.0 30 986-1016 3-32 (204)
282 3b6e_A Interferon-induced heli 94.8 0.073 2.5E-06 54.5 8.7 24 985-1008 49-72 (216)
283 1nks_A Adenylate kinase; therm 94.8 0.012 4.1E-07 59.4 2.7 34 986-1019 3-39 (194)
284 2xb4_A Adenylate kinase; ATP-b 94.8 0.019 6.5E-07 60.6 4.4 30 986-1015 2-31 (223)
285 2v54_A DTMP kinase, thymidylat 94.7 0.02 6.8E-07 58.6 4.4 33 985-1017 5-38 (204)
286 1cke_A CK, MSSA, protein (cyti 94.7 0.02 7E-07 59.7 4.4 30 985-1014 6-35 (227)
287 3ake_A Cytidylate kinase; CMP 94.6 0.025 8.4E-07 58.0 4.6 31 986-1016 4-34 (208)
288 2ewv_A Twitching motility prot 94.6 0.041 1.4E-06 63.2 6.9 71 983-1053 135-219 (372)
289 1uf9_A TT1252 protein; P-loop, 94.5 0.017 5.9E-07 58.9 3.2 32 984-1016 8-39 (203)
290 2plr_A DTMP kinase, probable t 94.4 0.038 1.3E-06 56.6 5.5 32 985-1016 5-38 (213)
291 3uie_A Adenylyl-sulfate kinase 94.4 0.039 1.3E-06 57.0 5.6 38 983-1020 24-64 (200)
292 2grj_A Dephospho-COA kinase; T 94.4 0.02 6.9E-07 59.8 3.4 31 986-1016 14-44 (192)
293 1vt4_I APAF-1 related killer D 94.4 0.26 9E-06 63.6 13.9 43 952-1007 131-173 (1221)
294 3a8t_A Adenylate isopentenyltr 94.3 0.018 6.2E-07 65.5 3.1 35 985-1019 41-75 (339)
295 2wwf_A Thymidilate kinase, put 94.3 0.014 4.9E-07 60.1 2.1 29 984-1012 10-38 (212)
296 1p9r_A General secretion pathw 94.3 0.16 5.4E-06 59.4 10.9 69 985-1053 168-246 (418)
297 3pfi_A Holliday junction ATP-d 94.2 0.012 4E-07 65.5 1.2 117 645-819 57-193 (338)
298 4e22_A Cytidylate kinase; P-lo 94.2 0.04 1.4E-06 59.5 5.3 31 984-1014 27-57 (252)
299 1jjv_A Dephospho-COA kinase; P 94.1 0.02 6.9E-07 59.1 2.8 29 986-1015 4-32 (206)
300 3nwj_A ATSK2; P loop, shikimat 94.0 0.027 9.3E-07 61.3 3.7 32 985-1016 49-80 (250)
301 2bbw_A Adenylate kinase 4, AK4 94.0 0.036 1.2E-06 59.2 4.6 31 984-1014 27-57 (246)
302 3r20_A Cytidylate kinase; stru 94.0 0.04 1.4E-06 59.5 4.8 30 985-1014 10-39 (233)
303 1nn5_A Similar to deoxythymidy 94.0 0.019 6.5E-07 59.2 2.1 31 985-1015 10-43 (215)
304 1uj2_A Uridine-cytidine kinase 93.9 0.053 1.8E-06 58.2 5.6 37 985-1021 23-67 (252)
305 2yvu_A Probable adenylyl-sulfa 93.8 0.069 2.4E-06 54.2 5.9 36 984-1019 13-51 (186)
306 3pie_A 5'->3' exoribonuclease 93.7 0.036 1.2E-06 71.2 4.3 75 583-667 1050-1124(1155)
307 2px0_A Flagellar biosynthesis 93.7 0.22 7.5E-06 55.4 10.2 36 983-1018 104-143 (296)
308 2p65_A Hypothetical protein PF 93.7 0.029 1E-06 55.6 2.8 61 682-746 95-161 (187)
309 1xx6_A Thymidine kinase; NESG, 93.6 0.22 7.7E-06 51.9 9.6 69 985-1055 9-93 (191)
310 3foz_A TRNA delta(2)-isopenten 93.6 0.04 1.4E-06 62.1 4.1 34 985-1018 11-44 (316)
311 2h92_A Cytidylate kinase; ross 93.6 0.037 1.3E-06 57.5 3.6 32 985-1016 4-35 (219)
312 1vht_A Dephospho-COA kinase; s 93.5 0.034 1.2E-06 58.0 3.2 31 985-1016 5-35 (218)
313 2pt7_A CAG-ALFA; ATPase, prote 93.5 0.058 2E-06 60.9 5.3 69 985-1053 172-250 (330)
314 4gp7_A Metallophosphoesterase; 93.4 0.22 7.4E-06 50.3 8.7 19 985-1003 10-28 (171)
315 1w36_D RECD, exodeoxyribonucle 93.3 0.16 5.4E-06 62.0 9.1 24 985-1008 165-188 (608)
316 1q3t_A Cytidylate kinase; nucl 93.3 0.067 2.3E-06 56.8 5.1 31 985-1015 17-47 (236)
317 3d3q_A TRNA delta(2)-isopenten 93.3 0.042 1.4E-06 62.6 3.6 33 985-1017 8-40 (340)
318 1ltq_A Polynucleotide kinase; 93.2 0.032 1.1E-06 61.0 2.5 32 985-1016 3-35 (301)
319 1ofh_A ATP-dependent HSL prote 93.0 0.064 2.2E-06 58.2 4.5 138 644-820 51-212 (310)
320 2f6r_A COA synthase, bifunctio 93.0 0.052 1.8E-06 59.7 3.8 31 985-1016 76-106 (281)
321 2gxq_A Heat resistant RNA depe 93.0 0.28 9.7E-06 50.0 9.0 23 985-1007 39-62 (207)
322 1qde_A EIF4A, translation init 93.0 0.38 1.3E-05 49.8 10.1 61 945-1008 13-76 (224)
323 1w4r_A Thymidine kinase; type 92.9 0.52 1.8E-05 49.6 11.0 32 985-1016 21-55 (195)
324 2qt1_A Nicotinamide riboside k 92.9 0.039 1.3E-06 57.1 2.4 32 985-1016 22-54 (207)
325 3zvl_A Bifunctional polynucleo 92.8 0.074 2.5E-06 61.8 4.9 32 984-1015 258-289 (416)
326 2qor_A Guanylate kinase; phosp 92.8 0.06 2E-06 55.8 3.7 26 984-1009 12-37 (204)
327 1m7g_A Adenylylsulfate kinase; 92.8 0.08 2.7E-06 55.1 4.6 35 985-1019 26-64 (211)
328 3exa_A TRNA delta(2)-isopenten 92.8 0.059 2E-06 60.8 3.8 34 985-1018 4-37 (322)
329 3fdi_A Uncharacterized protein 92.7 0.069 2.4E-06 55.9 4.1 29 986-1014 8-36 (201)
330 4a1f_A DNAB helicase, replicat 92.6 0.29 9.8E-06 55.7 9.2 36 982-1017 44-82 (338)
331 1vec_A ATP-dependent RNA helic 92.4 0.27 9.3E-06 50.1 8.0 18 985-1002 41-58 (206)
332 2oap_1 GSPE-2, type II secreti 92.3 0.1 3.4E-06 62.6 5.3 69 985-1053 261-343 (511)
333 3eph_A TRNA isopentenyltransfe 92.3 0.07 2.4E-06 62.1 3.8 33 985-1017 3-35 (409)
334 3llm_A ATP-dependent RNA helic 92.3 0.65 2.2E-05 49.1 11.0 21 985-1005 77-97 (235)
335 1sky_E F1-ATPase, F1-ATP synth 92.2 0.29 9.9E-06 58.0 8.9 24 985-1008 152-175 (473)
336 1hqc_A RUVB; extended AAA-ATPa 92.2 0.26 8.8E-06 54.0 8.0 89 644-747 39-148 (324)
337 2yhs_A FTSY, cell division pro 92.2 1.2 4.1E-05 53.2 14.1 26 983-1008 292-317 (503)
338 2qmh_A HPR kinase/phosphorylas 92.1 0.057 1.9E-06 57.3 2.5 34 984-1018 34-67 (205)
339 2bdt_A BH3686; alpha-beta prot 92.1 0.096 3.3E-06 53.2 4.1 25 986-1010 4-28 (189)
340 1rz3_A Hypothetical protein rb 92.1 0.3 1E-05 50.5 7.9 35 985-1019 23-60 (201)
341 2j37_W Signal recognition part 92.0 0.3 1E-05 58.4 8.8 73 983-1055 100-195 (504)
342 2axn_A 6-phosphofructo-2-kinas 92.0 0.18 6.3E-06 60.4 7.0 35 985-1019 36-73 (520)
343 2j9r_A Thymidine kinase; TK1, 92.0 0.52 1.8E-05 50.3 9.7 30 987-1016 31-63 (214)
344 2xxa_A Signal recognition part 91.9 0.33 1.1E-05 56.9 8.8 72 983-1054 99-194 (433)
345 1j8m_F SRP54, signal recogniti 91.8 0.53 1.8E-05 52.3 10.0 72 984-1055 98-192 (297)
346 2z4s_A Chromosomal replication 91.8 0.16 5.4E-06 59.5 6.0 25 492-518 130-154 (440)
347 1zu4_A FTSY; GTPase, signal re 91.8 1.5 5.2E-05 49.2 13.7 35 983-1017 104-141 (320)
348 1ls1_A Signal recognition part 91.6 0.82 2.8E-05 50.6 11.3 73 983-1055 97-192 (295)
349 2j41_A Guanylate kinase; GMP, 91.6 0.093 3.2E-06 53.6 3.4 24 985-1008 7-30 (207)
350 4fcw_A Chaperone protein CLPB; 91.6 0.28 9.5E-06 53.5 7.3 41 703-746 118-169 (311)
351 1t6n_A Probable ATP-dependent 91.5 1.2 4E-05 46.0 11.7 23 985-1007 52-74 (220)
352 4b3f_X DNA-binding protein smu 91.5 0.72 2.5E-05 56.4 11.6 48 954-1017 191-241 (646)
353 1kgd_A CASK, peripheral plasma 91.5 0.12 4E-06 52.6 3.9 25 985-1009 6-30 (180)
354 3tau_A Guanylate kinase, GMP k 91.3 0.1 3.5E-06 54.4 3.4 26 984-1009 8-33 (208)
355 3asz_A Uridine kinase; cytidin 91.3 0.11 3.8E-06 53.5 3.6 29 985-1013 7-37 (211)
356 1ex7_A Guanylate kinase; subst 91.3 0.15 5.3E-06 53.0 4.6 25 985-1009 2-26 (186)
357 2xau_A PRE-mRNA-splicing facto 91.2 0.73 2.5E-05 57.8 11.4 23 985-1007 110-132 (773)
358 2ffh_A Protein (FFH); SRP54, s 90.9 0.95 3.2E-05 53.0 11.3 73 983-1055 97-192 (425)
359 3tr0_A Guanylate kinase, GMP k 90.9 0.15 5.1E-06 52.1 4.0 25 985-1009 8-32 (205)
360 2v3c_C SRP54, signal recogniti 90.8 0.17 6E-06 59.2 5.0 35 984-1018 99-136 (432)
361 1x6v_B Bifunctional 3'-phospho 90.7 0.17 5.9E-06 62.0 5.0 35 985-1019 53-90 (630)
362 2chg_A Replication factor C sm 90.6 0.54 1.8E-05 47.4 7.9 41 703-746 101-141 (226)
363 1tf7_A KAIC; homohexamer, hexa 90.6 0.8 2.7E-05 54.6 10.6 72 984-1055 281-383 (525)
364 3e70_C DPA, signal recognition 90.6 0.54 1.9E-05 53.1 8.6 26 983-1008 128-153 (328)
365 3te6_A Regulatory protein SIR3 90.5 0.77 2.6E-05 51.7 9.7 60 687-749 116-175 (318)
366 3pvs_A Replication-associated 90.4 0.38 1.3E-05 56.6 7.4 86 645-745 52-142 (447)
367 3gmt_A Adenylate kinase; ssgci 90.4 0.19 6.5E-06 54.2 4.5 31 985-1015 9-39 (230)
368 3hdt_A Putative kinase; struct 90.3 0.17 5.9E-06 54.1 4.0 30 985-1014 15-44 (223)
369 3lxx_A GTPase IMAP family memb 90.2 1.3 4.4E-05 46.7 10.6 23 985-1007 30-52 (239)
370 3c8u_A Fructokinase; YP_612366 90.1 0.16 5.5E-06 52.8 3.5 27 983-1009 21-47 (208)
371 3u61_B DNA polymerase accessor 90.1 0.33 1.1E-05 53.5 6.2 93 645-747 50-146 (324)
372 3lxw_A GTPase IMAP family memb 90.0 0.65 2.2E-05 49.8 8.2 24 984-1007 21-44 (247)
373 1gtv_A TMK, thymidylate kinase 89.9 0.093 3.2E-06 54.0 1.5 24 986-1009 2-25 (214)
374 1lvg_A Guanylate kinase, GMP k 89.8 0.18 6.2E-06 52.2 3.5 25 985-1009 5-29 (198)
375 3ice_A Transcription terminati 89.6 0.82 2.8E-05 53.1 9.1 24 985-1008 175-198 (422)
376 3a00_A Guanylate kinase, GMP k 89.6 0.2 6.7E-06 51.1 3.6 24 986-1009 3-26 (186)
377 1njg_A DNA polymerase III subu 89.5 1 3.4E-05 45.8 8.9 54 690-746 111-165 (250)
378 3hws_A ATP-dependent CLP prote 89.3 0.36 1.2E-05 54.5 5.9 67 461-529 20-86 (363)
379 3iuy_A Probable ATP-dependent 89.3 0.89 3E-05 47.3 8.4 17 985-1001 58-74 (228)
380 3h1t_A Type I site-specific re 89.2 0.67 2.3E-05 55.7 8.4 24 985-1008 199-222 (590)
381 3thx_B DNA mismatch repair pro 89.1 0.99 3.4E-05 57.7 10.2 22 985-1006 674-695 (918)
382 3bos_A Putative DNA replicatio 89.0 0.36 1.2E-05 49.8 5.2 26 492-519 52-77 (242)
383 2gza_A Type IV secretion syste 89.0 0.4 1.4E-05 54.7 6.0 69 985-1053 176-262 (361)
384 2v1u_A Cell division control p 88.9 1.4 4.9E-05 48.8 10.4 57 689-747 117-177 (387)
385 1tf7_A KAIC; homohexamer, hexa 88.9 1.6 5.5E-05 52.0 11.3 35 983-1017 38-76 (525)
386 1c9k_A COBU, adenosylcobinamid 88.8 0.23 7.7E-06 51.7 3.4 32 987-1019 2-33 (180)
387 1r8s_A ADP-ribosylation factor 88.8 2.5 8.4E-05 40.7 10.8 23 986-1008 2-24 (164)
388 4eaq_A DTMP kinase, thymidylat 88.8 0.41 1.4E-05 50.9 5.5 31 985-1015 27-59 (229)
389 1a7j_A Phosphoribulokinase; tr 88.6 0.17 5.7E-06 56.1 2.4 37 985-1021 6-45 (290)
390 3ney_A 55 kDa erythrocyte memb 88.4 0.28 9.6E-06 51.6 3.9 25 985-1009 20-44 (197)
391 3p32_A Probable GTPase RV1496/ 88.4 0.9 3.1E-05 51.4 8.3 32 985-1016 80-114 (355)
392 3tbk_A RIG-I helicase domain; 88.3 1.6 5.4E-05 51.0 10.6 23 985-1007 20-42 (555)
393 1l8q_A Chromosomal replication 88.1 0.41 1.4E-05 52.9 5.2 33 492-526 37-72 (324)
394 2oxc_A Probable ATP-dependent 88.0 1.5 5.2E-05 45.8 9.3 23 985-1007 62-85 (230)
395 1m8p_A Sulfate adenylyltransfe 87.9 0.36 1.2E-05 58.5 4.9 35 985-1019 397-435 (573)
396 1q0u_A Bstdead; DEAD protein, 87.8 1.2 4.3E-05 46.0 8.3 17 985-1001 42-58 (219)
397 1zd9_A ADP-ribosylation factor 87.7 1.8 6.1E-05 43.4 9.2 23 985-1007 23-45 (188)
398 2gj8_A MNME, tRNA modification 87.6 0.73 2.5E-05 45.9 6.2 24 984-1007 4-27 (172)
399 2fwr_A DNA repair protein RAD2 87.5 0.42 1.4E-05 55.5 5.0 32 986-1017 110-141 (472)
400 3fe2_A Probable ATP-dependent 87.5 1.3 4.4E-05 46.8 8.3 17 985-1001 67-83 (242)
401 3k53_A Ferrous iron transport 87.4 0.75 2.6E-05 49.7 6.6 23 985-1007 4-26 (271)
402 2jeo_A Uridine-cytidine kinase 87.3 0.39 1.3E-05 51.2 4.2 27 985-1011 26-52 (245)
403 3b9q_A Chloroplast SRP recepto 87.3 0.67 2.3E-05 51.6 6.3 26 983-1008 99-124 (302)
404 1htw_A HI0065; nucleotide-bind 87.3 0.4 1.4E-05 48.4 4.1 24 985-1008 34-57 (158)
405 1znw_A Guanylate kinase, GMP k 87.3 0.37 1.3E-05 49.9 4.0 25 985-1009 21-45 (207)
406 1z6g_A Guanylate kinase; struc 87.2 0.36 1.2E-05 50.8 3.8 24 985-1008 24-47 (218)
407 2wjg_A FEOB, ferrous iron tran 87.1 1.1 3.8E-05 44.5 7.2 23 985-1007 8-30 (188)
408 3thx_A DNA mismatch repair pro 87.1 1.6 5.5E-05 55.9 10.3 21 985-1005 663-683 (934)
409 1xjc_A MOBB protein homolog; s 87.0 0.64 2.2E-05 47.7 5.4 32 985-1016 5-39 (169)
410 3tqf_A HPR(Ser) kinase; transf 86.6 0.5 1.7E-05 49.1 4.4 29 984-1013 16-44 (181)
411 1p5z_B DCK, deoxycytidine kina 86.5 0.19 6.6E-06 54.1 1.3 30 984-1013 24-54 (263)
412 2ged_A SR-beta, signal recogni 86.5 0.7 2.4E-05 46.3 5.4 25 984-1008 48-72 (193)
413 4edh_A DTMP kinase, thymidylat 86.4 0.63 2.1E-05 49.2 5.2 32 985-1016 7-41 (213)
414 2ocp_A DGK, deoxyguanosine kin 86.3 0.47 1.6E-05 50.3 4.1 28 985-1012 3-31 (241)
415 1wp9_A ATP-dependent RNA helic 86.1 1.8 6.2E-05 48.9 9.1 31 986-1016 25-59 (494)
416 1odf_A YGR205W, hypothetical 3 86.1 0.8 2.7E-05 50.7 6.0 26 984-1009 31-56 (290)
417 1s96_A Guanylate kinase, GMP k 86.0 0.47 1.6E-05 50.4 3.9 25 985-1009 17-41 (219)
418 2zj8_A DNA helicase, putative 86.0 3.1 0.00011 51.3 11.8 19 984-1002 39-57 (720)
419 2wji_A Ferrous iron transport 85.9 1.1 3.7E-05 44.1 6.3 22 985-1006 4-25 (165)
420 4i1u_A Dephospho-COA kinase; s 85.6 0.41 1.4E-05 50.9 3.2 130 986-1130 11-152 (210)
421 2v9p_A Replication protein E1; 85.5 0.51 1.7E-05 52.9 4.1 26 983-1008 125-150 (305)
422 3def_A T7I23.11 protein; chlor 85.5 2.2 7.6E-05 45.8 9.1 24 985-1008 37-60 (262)
423 1fzq_A ADP-ribosylation factor 85.5 1.9 6.4E-05 43.1 8.0 24 984-1007 16-39 (181)
424 2gk6_A Regulator of nonsense t 85.5 0.71 2.4E-05 56.4 5.6 23 986-1008 197-219 (624)
425 1bif_A 6-phosphofructo-2-kinas 85.4 0.29 9.9E-06 57.6 2.2 32 985-1016 40-74 (469)
426 1g8f_A Sulfate adenylyltransfe 85.4 1.4 4.6E-05 52.9 7.9 26 985-1010 396-421 (511)
427 3iby_A Ferrous iron transport 85.2 1.1 3.7E-05 48.5 6.4 23 985-1007 2-24 (256)
428 2orv_A Thymidine kinase; TP4A 85.2 2.6 8.8E-05 45.6 9.2 32 985-1016 20-54 (234)
429 2og2_A Putative signal recogni 84.9 1.1 3.7E-05 51.3 6.5 26 983-1008 156-181 (359)
430 3lnc_A Guanylate kinase, GMP k 84.9 0.34 1.1E-05 51.0 2.2 24 985-1008 28-52 (231)
431 3dz8_A RAS-related protein RAB 84.9 5.1 0.00017 40.0 10.9 24 985-1008 24-47 (191)
432 2va8_A SSO2462, SKI2-type heli 84.9 3.7 0.00013 50.4 11.8 20 984-1003 46-65 (715)
433 1sq5_A Pantothenate kinase; P- 84.8 0.47 1.6E-05 52.6 3.4 25 985-1009 81-105 (308)
434 1um8_A ATP-dependent CLP prote 84.8 0.31 1.1E-05 55.2 2.0 68 462-531 27-109 (376)
435 3kta_A Chromosome segregation 84.7 0.52 1.8E-05 47.3 3.4 24 986-1009 28-51 (182)
436 2qby_A CDC6 homolog 1, cell di 84.4 5.9 0.0002 43.7 12.1 56 689-746 115-172 (386)
437 1g8p_A Magnesium-chelatase 38 84.2 4.9 0.00017 44.2 11.3 52 450-520 20-71 (350)
438 2dyk_A GTP-binding protein; GT 84.1 0.61 2.1E-05 44.9 3.5 23 985-1007 2-24 (161)
439 2gks_A Bifunctional SAT/APS ki 84.0 1.5 5.3E-05 52.7 7.6 35 985-1019 373-410 (546)
440 3oiy_A Reverse gyrase helicase 84.0 1.8 6.1E-05 49.2 7.8 20 985-1004 37-56 (414)
441 1z06_A RAS-related protein RAB 83.8 4.5 0.00015 40.3 9.9 23 985-1007 21-43 (189)
442 1rj9_A FTSY, signal recognitio 83.8 0.7 2.4E-05 51.6 4.2 25 984-1008 102-126 (304)
443 2f7s_A C25KG, RAS-related prot 83.8 4.3 0.00015 41.4 9.9 23 985-1007 26-48 (217)
444 3fmp_B ATP-dependent RNA helic 83.7 1.3 4.3E-05 51.6 6.5 18 984-1001 131-148 (479)
445 1wb9_A DNA mismatch repair pro 83.7 5.1 0.00018 50.5 12.4 24 984-1007 607-630 (800)
446 3a1s_A Iron(II) transport prot 83.6 1.5 5.2E-05 47.4 6.7 22 985-1006 6-27 (258)
447 2qm8_A GTPase/ATPase; G protei 83.6 1.9 6.6E-05 48.6 7.8 24 985-1008 56-79 (337)
448 3aez_A Pantothenate kinase; tr 83.5 0.69 2.4E-05 51.8 4.0 26 984-1009 90-115 (312)
449 3b1v_A Ferrous iron uptake tra 83.5 1.4 4.9E-05 48.1 6.5 22 985-1006 4-25 (272)
450 1ko7_A HPR kinase/phosphatase; 83.3 0.68 2.3E-05 52.1 3.9 30 983-1013 143-172 (314)
451 1nrj_B SR-beta, signal recogni 83.3 0.75 2.6E-05 47.2 3.9 25 984-1008 12-36 (218)
452 3v9p_A DTMP kinase, thymidylat 83.2 0.78 2.7E-05 49.1 4.1 32 985-1016 26-64 (227)
453 1np6_A Molybdopterin-guanine d 83.2 0.67 2.3E-05 47.6 3.5 24 985-1008 7-30 (174)
454 1upt_A ARL1, ADP-ribosylation 83.1 0.85 2.9E-05 44.3 4.1 24 984-1007 7-30 (171)
455 2p67_A LAO/AO transport system 83.0 2.6 8.8E-05 47.5 8.5 25 984-1008 56-80 (341)
456 2e87_A Hypothetical protein PH 83.0 5.4 0.00019 44.9 11.2 24 984-1007 167-190 (357)
457 4ag6_A VIRB4 ATPase, type IV s 82.8 1.1 3.6E-05 51.2 5.3 33 984-1016 35-70 (392)
458 3cr8_A Sulfate adenylyltranfer 82.8 0.57 1.9E-05 56.6 3.1 36 985-1020 370-409 (552)
459 2v6i_A RNA helicase; membrane, 82.5 1.1 3.9E-05 51.9 5.5 21 985-1005 3-24 (431)
460 1z2a_A RAS-related protein RAB 82.4 0.79 2.7E-05 44.3 3.5 23 985-1007 6-28 (168)
461 2qtf_A Protein HFLX, GTP-bindi 82.3 2.4 8.2E-05 48.4 8.0 23 985-1007 180-202 (364)
462 3tmk_A Thymidylate kinase; pho 82.3 1.1 3.9E-05 47.5 4.9 32 985-1016 6-37 (216)
463 3i8s_A Ferrous iron transport 82.2 2.2 7.5E-05 46.4 7.3 23 985-1007 4-26 (274)
464 3dkp_A Probable ATP-dependent 82.2 2.1 7.3E-05 44.9 7.0 17 985-1001 67-83 (245)
465 3tqc_A Pantothenate kinase; bi 82.1 1.1 3.6E-05 50.7 4.8 26 984-1009 92-117 (321)
466 2wjy_A Regulator of nonsense t 82.0 1.2 4E-05 56.3 5.6 23 986-1008 373-395 (800)
467 1u8z_A RAS-related protein RAL 81.9 0.82 2.8E-05 44.0 3.4 24 985-1008 5-28 (168)
468 2f9l_A RAB11B, member RAS onco 81.8 0.77 2.6E-05 46.6 3.3 23 985-1007 6-28 (199)
469 1kao_A RAP2A; GTP-binding prot 81.7 0.86 2.9E-05 43.8 3.5 24 985-1008 4-27 (167)
470 2ce2_X GTPase HRAS; signaling 81.7 0.81 2.8E-05 43.8 3.3 24 985-1008 4-27 (166)
471 2wsm_A Hydrogenase expression/ 81.5 0.95 3.3E-05 46.6 3.9 25 985-1009 31-55 (221)
472 2cbz_A Multidrug resistance-as 81.4 0.76 2.6E-05 49.2 3.2 25 984-1008 31-55 (237)
473 3lv8_A DTMP kinase, thymidylat 81.4 1.1 3.9E-05 48.2 4.6 32 985-1016 28-63 (236)
474 3la6_A Tyrosine-protein kinase 81.3 7.7 0.00026 42.6 11.3 54 955-1018 73-130 (286)
475 3tif_A Uncharacterized ABC tra 81.3 0.77 2.6E-05 49.1 3.2 25 984-1008 31-55 (235)
476 1ek0_A Protein (GTP-binding pr 81.3 0.92 3.1E-05 43.8 3.5 24 985-1008 4-27 (170)
477 4a2p_A RIG-I, retinoic acid in 81.3 3.9 0.00013 47.8 9.5 23 985-1007 23-45 (556)
478 2hf9_A Probable hydrogenase ni 81.2 1.5 5.3E-05 45.2 5.4 24 985-1008 39-62 (226)
479 1oix_A RAS-related protein RAB 81.2 0.78 2.7E-05 46.5 3.1 24 985-1008 30-53 (191)
480 2lkc_A Translation initiation 81.2 1.1 3.9E-05 43.8 4.1 24 983-1006 7-30 (178)
481 3vkw_A Replicase large subunit 81.0 1.3 4.3E-05 52.3 5.1 22 985-1006 162-183 (446)
482 1z0j_A RAB-22, RAS-related pro 80.7 0.97 3.3E-05 43.7 3.5 24 985-1008 7-30 (170)
483 1yrb_A ATP(GTP)binding protein 80.6 1.7 6E-05 45.9 5.7 33 985-1017 15-49 (262)
484 1ky3_A GTP-binding protein YPT 80.6 0.95 3.2E-05 44.3 3.4 24 985-1008 9-32 (182)
485 2hup_A RAS-related protein RAB 80.4 5.4 0.00019 40.5 9.1 23 985-1007 30-52 (201)
486 2onk_A Molybdate/tungstate ABC 80.4 0.95 3.3E-05 48.7 3.6 24 985-1008 25-48 (240)
487 1lw7_A Transcriptional regulat 80.4 0.97 3.3E-05 51.2 3.8 27 985-1011 171-197 (365)
488 2f1r_A Molybdopterin-guanine d 80.4 0.7 2.4E-05 47.3 2.4 24 985-1008 3-26 (171)
489 2pcj_A ABC transporter, lipopr 80.3 0.72 2.5E-05 48.9 2.6 24 985-1008 31-54 (224)
490 1wms_A RAB-9, RAB9, RAS-relate 80.3 1 3.4E-05 44.1 3.5 23 985-1007 8-30 (177)
491 3e2i_A Thymidine kinase; Zn-bi 80.3 5.9 0.0002 42.4 9.5 30 987-1016 31-63 (219)
492 1z08_A RAS-related protein RAB 80.1 1 3.6E-05 43.6 3.4 23 985-1007 7-29 (170)
493 1g16_A RAS-related protein SEC 80.1 0.99 3.4E-05 43.7 3.3 23 985-1007 4-26 (170)
494 3l9o_A ATP-dependent RNA helic 80.0 3 0.0001 54.4 8.7 21 985-1005 200-220 (1108)
495 1ewq_A DNA mismatch repair pro 80.0 2.4 8.1E-05 53.2 7.4 23 985-1007 577-599 (765)
496 2nzj_A GTP-binding protein REM 80.0 1 3.4E-05 44.0 3.3 22 985-1006 5-26 (175)
497 2xtp_A GTPase IMAP family memb 80.0 3.2 0.00011 44.1 7.5 24 984-1007 22-45 (260)
498 1mv5_A LMRA, multidrug resista 79.9 0.89 3E-05 48.8 3.1 26 983-1008 27-52 (243)
499 3bc1_A RAS-related protein RAB 79.8 1.1 3.6E-05 44.4 3.5 23 985-1007 12-34 (195)
500 1r2q_A RAS-related protein RAB 79.8 1.1 3.8E-05 43.2 3.5 23 985-1007 7-29 (170)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.5e-57 Score=563.91 Aligned_cols=431 Identities=30% Similarity=0.461 Sum_probs=329.5
Q ss_pred eeeeecCCCCCCCCCC--CCCCCCCC-cccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcC-
Q 001076 644 IGVRFDRSIPEGNNLG--GFCEDDHG-FFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG- 719 (1163)
Q Consensus 644 vgV~Fd~~~~~~~~l~--~~c~~~~~-ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~- 719 (1163)
-||+|.+|+++||++- ..|..-.. ||.-.+... .++|.++.+..++.+|+.+.. ++|+||||||||.+..+
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l--~sk~~gese~~lr~lF~~A~~---~~PsIIfIDEiDal~~~r 313 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI--MSKLAGESESNLRKAFEEAEK---NAPAIIFIDELDAIAPKR 313 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHH--HSSCTTHHHHHHHHHHHHHTT---SCSEEEEEESGGGTCCTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHh--hcccchHHHHHHHHHHHHHHH---cCCeEEEEehhccccccc
Confidence 4899999999999987 22322223 443223222 489999999999999988765 89999999999995542
Q ss_pred ---ChhhHHHHHHHHhcC------CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCccccccccccc
Q 001076 720 ---NNDAYGALKSKLENL------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKET 790 (1163)
Q Consensus 720 ---~~~~~~~i~s~L~~L------~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~ 790 (1163)
+.+...++++.|+.+ +++|+||++||+++. |||
T Consensus 314 ~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~----------------------LD~---------------- 355 (806)
T 3cf2_A 314 EKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS----------------------IDP---------------- 355 (806)
T ss_dssp TTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTT----------------------SCT----------------
T ss_pred CCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhh----------------------cCH----------------
Confidence 456667777777655 569999999997665 444
Q ss_pred hHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhhhhcCCC-CcccccchhhcccCCchhh
Q 001076 791 PKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEG 867 (1163)
Q Consensus 791 ~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~sgad 867 (1163)
||+| ||++++++++|+.++|.+|+++|+.-. .+ .+++|..||..|.||+|+|
T Consensus 356 -----------------------ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~--~~~~dvdl~~lA~~T~GfsgaD 410 (806)
T 3cf2_A 356 -----------------------ALRRFGRFDREVDIGIPDATGRLEILQIHTKNM--KLADDVDLEQVANETHGHVGAD 410 (806)
T ss_dssp -----------------------TTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSS--EECTTCCHHHHHHHCCSCCHHH
T ss_pred -----------------------HHhCCcccceEEecCCCCHHHHHHHHHHHhcCC--CCCcccCHHHHHHhcCCCCHHH
Confidence 7777 999999999999999999999997622 22 7889999999999999999
Q ss_pred hhhHHhHHhhhhhhhcCCCCCC-CCcc-cccccchhhhHHHHHhhhhhhhhhhhhhhcccchhHHHHHHhcCCCCCCCCC
Q 001076 868 VEKIVGWALSHHFMHCSEAPGK-DAKL-KISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIG 945 (1163)
Q Consensus 868 Ie~Lv~~Aas~Al~r~~~qi~~-~~kl-~Id~~sI~v~~~dF~~al~eikp~~~slk~lv~~~e~ek~ll~~iip~~e~~ 945 (1163)
|+.||.+|+..|+.|..+.+.. .... .-..+++.+...||..++.++.|...+ .. ....+.
T Consensus 411 L~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r----------------~~-~~~~p~ 473 (806)
T 3cf2_A 411 LAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALR----------------ET-VVEVPQ 473 (806)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCC----------------CC-CCBCCC
T ss_pred HHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccc----------------cc-cccCCC
Confidence 9999999999999987654322 1111 112245667778898888777653211 01 112236
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1025 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~ 1025 (1163)
++|++|+|++++++.|.+.+.+|+.+|+.|.+.++ .++++||||||||||||++|++||++++.+|+.++.++++++|+
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~-~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~v 552 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 552 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCC-CCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTC
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCC-CCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcccc
Confidence 78999999999999999999999999999998774 56699999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhccCCeEEEEccccccccCCCCc--chHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCC
Q 001076 1026 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1103 (1163)
Q Consensus 1026 Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~--~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld 1103 (1163)
|++|+.++.+|..|+++.||||||||||.|++.|... ......++++++||..|+++... .+|+||+|||+|+.||
T Consensus 553 Gese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~--~~V~vi~aTN~p~~lD 630 (806)
T 3cf2_A 553 GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDIID 630 (806)
T ss_dssp SSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS--SSEEEECC-CCSSSSC
T ss_pred chHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC--CCEEEEEeCCCchhCC
Confidence 9999999999999999999999999999999887532 33456778999999999998654 6799999999999999
Q ss_pred HHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1104 EAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1104 ~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
++++| ||+++|+|++|+.++|.+||+.++++..+..++|++.||++|+||||+||+.+|
T Consensus 631 ~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~ 691 (806)
T 3cf2_A 631 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 691 (806)
T ss_dssp HHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHH
T ss_pred HhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHH
Confidence 99999 999999999999999999999999999888999999999999999999999987
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-38 Score=365.06 Aligned_cols=216 Identities=35% Similarity=0.607 Sum_probs=201.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 001076 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1163)
Q Consensus 944 ~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~ 1023 (1163)
+.++|+||+|+++++++|++.+.+|+.+|++|.+.++ .|++|+|||||||||||+||+|+|++++.+|+.++++++.++
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi-~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk 221 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI-AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK 221 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcc
Confidence 4789999999999999999999999999999998875 566999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCc--chHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCC
Q 001076 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1163)
Q Consensus 1024 ~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~--~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~ 1101 (1163)
|+|++++.++.+|..|+.++||||||||||.+++++... .......+++++||..||++.. ..+|+||||||+|+.
T Consensus 222 ~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 222 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET--SKNIKIIMATNRLDI 299 (405)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC--CCCEEEEEEESCSSS
T ss_pred ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC--CCCeEEEeccCChhh
Confidence 999999999999999999999999999999999877542 3344567788999999999864 368999999999999
Q ss_pred CCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1102 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1102 Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
||++++| ||++.|+|++|+.++|.+||+.++.+..+..++|+..||+.|+||||+||+.+|
T Consensus 300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~ 362 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVC 362 (405)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHH
T ss_pred CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHH
Confidence 9999999 999999999999999999999999999999999999999999999999999988
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-37 Score=358.95 Aligned_cols=217 Identities=36% Similarity=0.645 Sum_probs=200.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 001076 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1163)
Q Consensus 943 e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s 1022 (1163)
.+.++|+||+|+++++++|++.+.+|+.+|+.|.+.++ .+++|||||||||||||+||+|||++++++|+.++++++.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi-~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI-KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC-CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 34789999999999999999999999999999998875 45699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCc--chHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCC
Q 001076 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1163)
Q Consensus 1023 ~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~--~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1163)
+|+|++++.++.+|..|++.+||||||||||.+++.|... ........++++||..+|++... .+|+||||||+++
T Consensus 255 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~--~~ViVIaATNrpd 332 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR--GDVKVIMATNKIE 332 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS--SSEEEEEEESCST
T ss_pred ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC--CCEEEEEeCCChh
Confidence 9999999999999999999999999999999999887432 22335567788999999987543 6799999999999
Q ss_pred CCCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1101 ~Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
.||++++| ||++.|+|++|+.++|.+||+.++.+..+..++|++.||..|+||||+||+.+|
T Consensus 333 ~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~ 396 (437)
T 4b4t_I 333 TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMC 396 (437)
T ss_dssp TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHH
T ss_pred hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHH
Confidence 99999999 999999999999999999999999999988999999999999999999999987
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=355.90 Aligned_cols=217 Identities=34% Similarity=0.607 Sum_probs=201.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 001076 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1163)
Q Consensus 943 e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s 1022 (1163)
.+.++|+||+|++++++.|++.+.+|+.+|+.|.+.++ .|++|||||||||||||+||+|||++++++|+.++++++.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi-~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI-DPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC-CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 34689999999999999999999999999999998774 56699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCc--chHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCC
Q 001076 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1163)
Q Consensus 1023 ~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~--~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1163)
+|+|++++.++.+|..|+.++||||||||||.++..|... ........++++++..|++... ..+|+||+|||+++
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~ViVIaATNrpd 359 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP--RGNIKVMFATNRPN 359 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC--TTTEEEEEECSCTT
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC--CCcEEEEeCCCCcc
Confidence 9999999999999999999999999999999999877543 3344566788899999998764 36899999999999
Q ss_pred CCCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1101 ~Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
.||++++| ||++.|+|++|+.++|.+||+.++.+..+..+++++.||++|+||||+||+.||
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~ 423 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVC 423 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHH
T ss_pred cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHH
Confidence 99999999 999999999999999999999999999988999999999999999999999998
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-37 Score=357.57 Aligned_cols=218 Identities=33% Similarity=0.600 Sum_probs=202.1
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001076 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1163)
Q Consensus 942 ~e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~ 1021 (1163)
..+.++|+||+|++++++.|.+.+.+|+.+|+.|.+.++ .+++|||||||||||||+||+|||++++++|+.++++++.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~-~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI-RAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 345789999999999999999999999999999998875 4569999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcc--hHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCC
Q 001076 1022 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1163)
Q Consensus 1022 s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~--~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p 1099 (1163)
++|+|++++.++.+|..|+++.||||||||||.+++.|.... .......++++|+..|+++... .+|+||||||+|
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~--~~ViVIaaTNrp 330 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD--DRVKVLAATNRV 330 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS--CSSEEEEECSSC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC--CCEEEEEeCCCc
Confidence 999999999999999999999999999999999998875433 2345567889999999998653 679999999999
Q ss_pred CCCCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1100 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1100 ~~Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
+.||++++| ||++.|+|++|+.++|.+||+.++.+..+..+++++.||+.|+||||+||+.+|
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~ 395 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVT 395 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHH
T ss_pred hhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHH
Confidence 999999999 999999999999999999999999999988999999999999999999999997
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-37 Score=356.67 Aligned_cols=217 Identities=39% Similarity=0.687 Sum_probs=200.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 001076 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1163)
Q Consensus 943 e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s 1022 (1163)
.+.++|+||+|++++++.|.+.+.+|+.+|++|.+.++ .|++|||||||||||||+||+|||++++++|+.++++++.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~-~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI-KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 34789999999999999999999999999999998885 56799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcc--hHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCC
Q 001076 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1163)
Q Consensus 1023 ~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~--~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1163)
+|.|+++..++.+|..|+.+.||||||||||.++++|.... .......++++||..|+++... .+|+||+|||+|+
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~vivI~ATNrp~ 331 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL--GQTKIIMATNRPD 331 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT--TSSEEEEEESSTT
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC--CCeEEEEecCCch
Confidence 99999999999999999999999999999999998774432 2345567889999999998643 6799999999999
Q ss_pred CCCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1101 ~Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
.||++++| ||++.|+|++|+.++|.+||+.++.+..+..++|+..||+.|+||||+||+.+|
T Consensus 332 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~ 395 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCA 395 (437)
T ss_dssp SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHH
T ss_pred hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHH
Confidence 99999998 699999999999999999999999999888999999999999999999999987
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-36 Score=350.59 Aligned_cols=217 Identities=38% Similarity=0.627 Sum_probs=200.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 001076 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1163)
Q Consensus 943 e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s 1022 (1163)
.+.++|+||+|++++++.|.+.+.+|+.+|+.|.+.++ .+++|+|||||||||||+||+|||++++++|+.++++++.+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~-~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI-DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 34689999999999999999999999999999998885 56699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCc--chHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCC
Q 001076 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1163)
Q Consensus 1023 ~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~--~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1163)
+|+|+++..++.+|..|+.+.||||||||||.+++.|... .......+++++|+..|+|+... .+|+||||||+++
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~--~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS--TNVKVIMATNRAD 322 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS--CSEEEEEEESCSS
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC--CCEEEEEecCChh
Confidence 9999999999999999999999999999999999877432 22335577899999999998654 6799999999999
Q ss_pred CCCHHHHh--ccCcEEEec-CCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1101 DLDEAVVR--RLPRRLMVN-LPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1101 ~Ld~aLlr--RFd~vI~I~-~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
.||++++| ||++.|+|+ +|+.++|..||+.++.+..+..++|++.||..|+||||+||+.+|
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~ 387 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIM 387 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHH
T ss_pred hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHH
Confidence 99999999 999999995 899999999999999999988999999999999999999999988
No 8
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=2.4e-38 Score=396.03 Aligned_cols=430 Identities=30% Similarity=0.469 Sum_probs=314.7
Q ss_pred eeeecCCCCCCCCCCCC--CCCCCCccccccccccc-CCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcC--
Q 001076 645 GVRFDRSIPEGNNLGGF--CEDDHGFFCTASSLRLD-SSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG-- 719 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~~~--c~~~~~ff~~~~~~~~d-~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~-- 719 (1163)
+|.+-+|.++||++-.. |..-...|.... |.+ .+.|.++.+..+..+|+.+.. ..|.|||+||||.++..
T Consensus 240 ~vLL~Gp~GtGKTtLarala~~l~~~~i~v~--~~~l~~~~~g~~~~~l~~vf~~a~~---~~p~il~iDEid~l~~~~~ 314 (806)
T 1ypw_A 240 GILLYGPPGTGKTLIARAVANETGAFFFLIN--GPEIMSKLAGESESNLRKAFEEAEK---NAPAIIFIDELDAIAPKRE 314 (806)
T ss_dssp EEEECSCTTSSHHHHHHHHHHTTTCEEEEEE--HHHHSSSSTTHHHHHHHHHHHHHHH---HCSEEEEEESGGGTSCTTS
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCcEEEEE--chHhhhhhhhhHHHHHHHHHHHHHh---cCCcEEEeccHHHhhhccc
Confidence 57778899999987621 111122232221 112 367888888889999988876 78999999999996652
Q ss_pred --ChhhHHHHHHHHhcC------CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCccccccccccch
Q 001076 720 --NNDAYGALKSKLENL------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETP 791 (1163)
Q Consensus 720 --~~~~~~~i~s~L~~L------~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~~ 791 (1163)
+.++...++..|..+ +..|+||+++|+++. +|+
T Consensus 315 ~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~----------------------ld~----------------- 355 (806)
T 1ypw_A 315 KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS----------------------IDP----------------- 355 (806)
T ss_dssp CCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTT----------------------SCT-----------------
T ss_pred cccchHHHHHHHHHHHHhhhhcccccEEEecccCCchh----------------------cCH-----------------
Confidence 345555555555544 458999999996543 333
Q ss_pred HHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhhhhcCCC-CcccccchhhcccCCchhhh
Q 001076 792 KALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGV 868 (1163)
Q Consensus 792 ~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~sgadI 868 (1163)
+++| ||++++++++|+...|.+|+++|.. ...+ .+.++..++..+.+|.++++
T Consensus 356 ----------------------al~r~gRf~~~i~i~~p~~~~r~~il~~~~~--~~~l~~~~~l~~la~~t~g~~g~dl 411 (806)
T 1ypw_A 356 ----------------------ALRRFGRFDREVDIGIPDATGRLEILQIHTK--NMKLADDVDLEQVANETHGHVGADL 411 (806)
T ss_dssp ----------------------TTTSTTSSCEEECCCCCCHHHHHHHHHHTTT--TSCCCTTCCTHHHHHSCSSCCHHHH
T ss_pred ----------------------HHhcccccccccccCCCCHHHHHHHHHHHHh--cCCCcccchhHHHHHhhcCcchHHH
Confidence 2222 4444455555555556666666643 2222 66789999999999999999
Q ss_pred hhHHhHHhhhhhhhcCCCCCCC-Ccc-cccccchhhhHHHHHhhhhhhhhhhhhhhcccchhHHHHHHhcCCCCCCCCCC
Q 001076 869 EKIVGWALSHHFMHCSEAPGKD-AKL-KISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGV 946 (1163)
Q Consensus 869 e~Lv~~Aas~Al~r~~~qi~~~-~kl-~Id~~sI~v~~~dF~~al~eikp~~~slk~lv~~~e~ek~ll~~iip~~e~~~ 946 (1163)
..+|..|+..++.+....+... ..+ ......+.+...+|..++....+.. ... ........
T Consensus 412 ~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~----------------~~~-~~~~~~~v 474 (806)
T 1ypw_A 412 AALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSA----------------LRE-TVVEVPQV 474 (806)
T ss_dssp HHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCC----------------CCC-CCCCCCCC
T ss_pred HHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCchh----------------hhh-hcccCccc
Confidence 9999999998887654322110 000 0000112222333333322221100 000 11123367
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccccc
Q 001076 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG 1026 (1163)
Q Consensus 947 tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~G 1026 (1163)
+|++++|++++++.|.+++.+++.+++.|...++ .++.++||+||||||||+||++||++++.+|+.++++++.+.|+|
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g 553 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFG 553 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCC-CCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTT
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHHhcCC-CCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcC
Confidence 8999999999999999999999999988877664 455789999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhccCCeEEEEccccccccCCCCc--chHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCH
Q 001076 1027 EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1104 (1163)
Q Consensus 1027 e~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~--~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~ 1104 (1163)
+.+..++.+|..|+...|+||||||||.|+..+... .......+++++|+..|++... ..+++||+|||.++.|++
T Consensus 554 ~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~--~~~v~vI~tTN~~~~ld~ 631 (806)
T 1ypw_A 554 ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDP 631 (806)
T ss_dssp TSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--------CCBCCCCCBSCGGGSC
T ss_pred ccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccc--cCCeEEEEecCCcccCCH
Confidence 999999999999999999999999999998776542 3345778899999999998754 368999999999999999
Q ss_pred HHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1105 AVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1105 aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
+++| ||+..|+++.|+.++|.+||+.++.+..+..++++..|++.|+||||+||+.+|
T Consensus 632 allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~ 691 (806)
T 1ypw_A 632 AILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 691 (806)
T ss_dssp TTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHH
T ss_pred HHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHH
Confidence 9999 999999999999999999999999988888889999999999999999999887
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.98 E-value=8.7e-33 Score=342.98 Aligned_cols=215 Identities=42% Similarity=0.671 Sum_probs=200.1
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 001076 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1163)
Q Consensus 944 ~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~ 1023 (1163)
..++|+||+|+++++++|++.+.+|+.+|++|.+.++ +|++|||||||||||||+||++||++++.+|+.+++++++++
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~-~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCC-CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCC-CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 4679999999999999999999999999999998774 567999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCC
Q 001076 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1103 (1163)
Q Consensus 1024 ~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld 1103 (1163)
|.|+.++.++.+|..|++++|+||||||||.|++.+.... .+..++++++|+..|+++... .+|+||+|||+++.||
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~-~~~~~riv~~LL~~mdg~~~~--~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSID 354 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC-CTTHHHHHHHHHTHHHHCCGG--GCEEEEEECSSTTTSC
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC-ChHHHHHHHHHHHHHhccccc--CCEEEEEecCChhhcC
Confidence 9999999999999999999999999999999998775432 344577899999999998654 6799999999999999
Q ss_pred HHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1104 EAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1104 ~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
++++| ||++.|+++.|+.++|.+||+.++.+..+..++++..||.+|+||+|+||+.||
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv 415 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHH
T ss_pred HHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHH
Confidence 99999 999999999999999999999999998888999999999999999999999987
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.97 E-value=3.7e-30 Score=290.18 Aligned_cols=215 Identities=44% Similarity=0.788 Sum_probs=195.2
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecccccc
Q 001076 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITS 1022 (1163)
Q Consensus 944 ~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL-g~pfi~Id~seL~s 1022 (1163)
+.++|++|+|++++++.|.+.+.+|+.++++|... ..|++++||+||||||||+||+++|+++ +.+|+.++++++.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT--CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCC--CCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 36789999999999999999999999999999743 5677899999999999999999999999 99999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCC
Q 001076 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1102 (1163)
Q Consensus 1023 ~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~L 1102 (1163)
.|.|..++.++.+|..++...|+||||||||.+.+.+... ......+++++|+..++++.. ...+++||+|||.++.+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~-~~~~v~vI~atn~~~~l 162 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVL 162 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-CTTHHHHHHHHHHHHHHCSSS-CCTTEEEEEEESCTTTS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc-cchHHHHHHHHHHHHHhcccc-cCCCEEEEEecCCcccC
Confidence 9999999999999999999999999999999998766543 345667888999999998753 24789999999999999
Q ss_pred CHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1103 DEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1103 d~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
+++++|||+.++++++|+.++|.+||+.++.+.... .+.++..||+.|+||+|+||+.||
T Consensus 163 d~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 163 DSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp CHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999999999999999999999876653 788999999999999999999987
No 11
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.96 E-value=1.7e-29 Score=283.93 Aligned_cols=215 Identities=45% Similarity=0.785 Sum_probs=191.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 001076 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1163)
Q Consensus 944 ~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~ 1023 (1163)
..++|++|+|++.+++.|.+.+.+|+.+++.|... ..++++|||+||||||||+||+++|++++.+|+.++++++.+.
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 90 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN--RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 90 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTT--CCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcC--CCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc
Confidence 46789999999999999999999999999998764 4677899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCC
Q 001076 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1103 (1163)
Q Consensus 1024 ~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld 1103 (1163)
+.|..+..++.+|..++...|+||||||||.|.+.+.. .......++.++++..++++.. ...+++||+|||.++.|+
T Consensus 91 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vi~atn~~~~ld 168 (322)
T 3eie_A 91 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE-GESEASRRIKTELLVQMNGVGN-DSQGVLVLGATNIPWQLD 168 (322)
T ss_dssp TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC-------CCTHHHHHHHHHHHGGGGT-SCCCEEEEEEESCGGGSC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCC-CcchHHHHHHHHHHHHhccccc-cCCceEEEEecCChhhCC
Confidence 99999999999999999999999999999999866533 2334556788889999988753 346899999999999999
Q ss_pred HHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1104 EAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1104 ~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
+++++||+..+++++|+.++|.+||+.++.+.... .+.++..|+.+|+||+|+||..||
T Consensus 169 ~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 169 SAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp HHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred HHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999999999999999999999887644 788999999999999999999887
No 12
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.96 E-value=4.6e-29 Score=284.85 Aligned_cols=218 Identities=44% Similarity=0.773 Sum_probs=186.9
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 001076 941 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1020 (1163)
Q Consensus 941 ~~e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL 1020 (1163)
......+|++|+|++.+++.|.+.+.+++.+++.|... ..++++|||+||||||||+||+++|++++.+|+.++++++
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l 120 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN--RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 120 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSS--CCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcC--CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 34456799999999999999999999999999999763 4677899999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCC
Q 001076 1021 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1163)
Q Consensus 1021 ~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1163)
.+.+.|..+..++.+|..++...|+||||||||.|.+.+.. ......+.+.++|+..++++.. ...+++||+|||.++
T Consensus 121 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~-~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vI~atn~~~ 198 (355)
T 2qp9_X 121 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE-GESEASRRIKTELLVQMNGVGN-DSQGVLVLGATNIPW 198 (355)
T ss_dssp HSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-------CTHHHHHHHHHHHHHHHCC----CCEEEEEEESCGG
T ss_pred hhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCC-CcchHHHHHHHHHHHHhhcccc-cCCCeEEEeecCCcc
Confidence 99999999999999999999999999999999999866543 2344667788899999987643 236799999999999
Q ss_pred CCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCC-CChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1101 DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1101 ~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l-~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
.|+++++|||+..+++++|+.++|.+||+.++..... ..+.++..||+.|+||+|+||+.||
T Consensus 199 ~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 199 QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp GSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999999999999999999999999988764 3788999999999999999999987
No 13
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.96 E-value=4.4e-29 Score=278.20 Aligned_cols=216 Identities=43% Similarity=0.721 Sum_probs=190.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 001076 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1163)
Q Consensus 944 ~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~ 1023 (1163)
..++|++|+|++++++.|.+.+.+++.+++.|...++ .+++++||+||||||||+||+++|++++.+|+.++++++.+.
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC-CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 3578999999999999999999999999999987664 456899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCc--chHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCC
Q 001076 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1163)
Q Consensus 1024 ~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~--~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~ 1101 (1163)
++|..+..++.+|..|....|+||||||||.|...+... .......+++++|+..++++.. ..+++||+|||.++.
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~--~~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDI 166 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT--TSSEEEEEEESCGGG
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC--CCCEEEEEecCCccc
Confidence 999999999999999999999999999999987543211 0011223566778888887653 367999999999999
Q ss_pred CCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1102 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1102 Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
++++++| ||+.+++++.|+.++|.+|++.++.+..+..++++..|+.+|+||+|+||+.+|
T Consensus 167 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~ 229 (301)
T 3cf0_A 167 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 229 (301)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHH
T ss_pred cChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHH
Confidence 9999999 999999999999999999999999988877889999999999999999999987
No 14
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.96 E-value=2.1e-28 Score=287.33 Aligned_cols=219 Identities=44% Similarity=0.771 Sum_probs=186.5
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecc
Q 001076 940 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMS 1018 (1163)
Q Consensus 940 p~~e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL-g~pfi~Id~s 1018 (1163)
......++|++|+|++.+++.|.+.+.+|+.++++|... ..++++|||+||||||||+||+++|+++ +.+|+.++++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~ 202 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS 202 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGG--GCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhcc--CCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHH
Confidence 334457899999999999999999999999999988743 4567899999999999999999999999 9999999999
Q ss_pred ccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCC
Q 001076 1019 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1098 (1163)
Q Consensus 1019 eL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~ 1098 (1163)
++.+.|.|..+..++.+|..++...|+||||||||.|.+.+... .....+++.++|+..++++.. ...+++||+|||.
T Consensus 203 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~lL~~l~~~~~-~~~~v~vI~atn~ 280 (444)
T 2zan_A 203 DLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNI 280 (444)
T ss_dssp ---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC-CCGGGHHHHHHHHTTTTCSSC-CCSSCEEEEEESC
T ss_pred HHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc-cccHHHHHHHHHHHHHhCccc-CCCCEEEEecCCC
Confidence 99999999999999999999999999999999999998766443 334567788999999988753 2468999999999
Q ss_pred CCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCC-CChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1099 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1099 p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l-~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
++.++++++|||+.++.+++|+.++|..||+.++..... ..+.++..||..|+||+|+||..||
T Consensus 281 ~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 281 PWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp GGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred ccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999999999999999999999999987664 3788999999999999999999987
No 15
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.95 E-value=3.8e-28 Score=268.24 Aligned_cols=214 Identities=41% Similarity=0.683 Sum_probs=179.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~ 1024 (1163)
.++|+||+|++++++.|.+.+.+|+.+++.|...++. +++|+||+||||||||+|+++||.+++.+++.+++.++...+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~-~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLV-TPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCC-CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCC-CCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 5789999999999999999999999999999887754 447899999999999999999999999999999999999888
Q ss_pred ccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCH
Q 001076 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1104 (1163)
Q Consensus 1025 ~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~ 1104 (1163)
.++.+..++.+|+.++...|+|+|+||||.++..+... ......++.++++..|++... ...++++++||.|+.||+
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~-~~~~~~~~~~~~l~~Lsgg~~--~~~~i~ia~tn~p~~LD~ 161 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR-ETGASVRVVNQLLTEMDGLEA--RQQVFIMAATNRPDIIDP 161 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC----------CTTHHHHHHHHHHTCCS--TTCEEEEEEESCGGGSCH
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC-cchHHHHHHHHHHHhhhcccc--cCCEEEEeecCChhhCCH
Confidence 99999999999999988999999999999987554321 122334577888999988753 367999999999999999
Q ss_pred HHHh--ccCcEEEecCCCHHHHHHHHHHHHhh---CCCCChhhHHHHHHHc--CCCCHHHHHhhc
Q 001076 1105 AVVR--RLPRRLMVNLPDAPNREKIIRVILAK---EELASDVDLEGIANMA--DGYSGSDLKVDY 1162 (1163)
Q Consensus 1105 aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k---~~l~~dvdl~~LA~~T--eGySgaDLk~Lv 1162 (1163)
+++| ||++.|++++|+.++|.+||+.+++. ..+..++++..||..| +||||+||+.||
T Consensus 162 al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~ 226 (274)
T 2x8a_A 162 AILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALV 226 (274)
T ss_dssp HHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHH
T ss_pred hhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHH
Confidence 9999 99999999999999999999999854 3456789999999875 599999999987
No 16
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.1e-26 Score=265.12 Aligned_cols=216 Identities=47% Similarity=0.824 Sum_probs=188.0
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 001076 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1163)
Q Consensus 944 ~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~ 1023 (1163)
...+|++|+|++.+++.|.+.+.+++.+++.|... ..++++|||+||||||||+||+++|++++.+|+.++++++...
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL--RGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGG--GSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhc--cCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 35789999999999999999999998888887654 3567899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCC
Q 001076 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1103 (1163)
Q Consensus 1024 ~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld 1103 (1163)
+.|..+..++.+|..+....|+||||||||.|...+.. ..+.....++++|+..+++.......+++||+|||.++.++
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~ 235 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD-GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEID 235 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC-CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCC
Confidence 99999999999999999999999999999999866543 23445677888999999887655567899999999999999
Q ss_pred HHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCC-CChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1104 EAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1104 ~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l-~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
+++++||+..++++.|+.++|.+|++.++....+ ..+.++..|++.++||+++||+.||
T Consensus 236 ~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 236 EAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999999999999999999999987654 3678899999999999999999987
No 17
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.94 E-value=9.9e-27 Score=275.24 Aligned_cols=216 Identities=41% Similarity=0.638 Sum_probs=187.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 001076 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1163)
Q Consensus 943 e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s 1022 (1163)
....+|++|+|++++++.+.+.+.. +..+..|.+.+. ++++++||+||||||||+||++||.+++.+|+.++++++..
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~-~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~ 87 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGA-RMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVE 87 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTC-CCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTT
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCC-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHH
Confidence 5578999999999999999998875 567778877664 45588999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCc--chHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCC
Q 001076 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1163)
Q Consensus 1023 ~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~--~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1163)
.+.|..+..++.+|..|+...|+||||||||.+...+... +.......+++.|+..++++.. +.+++||++||.++
T Consensus 88 ~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~--~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 88 LFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS--KEGIIVMAATNRPD 165 (476)
T ss_dssp CCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG--GGTEEEEEEESCGG
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC--CCCEEEEEecCChh
Confidence 9999999999999999999999999999999997665421 2223345677888888887653 35799999999999
Q ss_pred CCCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1101 ~Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
.++++++| ||++.+.|+.|+.++|.+|++.++.+..+..++++..||..|.||+|+||+++|
T Consensus 166 ~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv 229 (476)
T 2ce7_A 166 ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLV 229 (476)
T ss_dssp GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHH
Confidence 99999998 999999999999999999999999988888888999999999999999999886
No 18
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=2.5e-26 Score=251.48 Aligned_cols=215 Identities=43% Similarity=0.732 Sum_probs=190.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~ 1024 (1163)
..+|++|+|++++++.|.+++..++..++.|...++. ++.++||+||||||||+||+++|++++.+++.+++.++...+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 91 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIE-PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKF 91 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCC-CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCS
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCC-CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhc
Confidence 5689999999999999999999999999999887643 457899999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCc--chHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCC
Q 001076 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1102 (1163)
Q Consensus 1025 ~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~--~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~L 1102 (1163)
.|..+..+..+|..++...|+||||||||.+..++... .........+..++..+++... ..+++||+|||.++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 92 IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA--RGDVKIIGATNRPDIL 169 (285)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS--SSSEEEEEECSCGGGB
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEeCCCchhc
Confidence 99999999999999999999999999999998665432 1222334556667777766543 3579999999999999
Q ss_pred CHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1103 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1103 d~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
++++++ ||+.++.++.|+.++|.+|++.++....+..+.++..|+..+.||+++||+.+|
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~ 231 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAIC 231 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHH
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHH
Confidence 999999 999999999999999999999999888888888999999999999999999886
No 19
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.94 E-value=2.2e-26 Score=249.13 Aligned_cols=216 Identities=40% Similarity=0.629 Sum_probs=183.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 001076 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1163)
Q Consensus 943 e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s 1022 (1163)
....+|++|+|++.+++.+.+.+.. +.+++.|...+. .+++++||+||||||||+||+++|+.++.+++.+++.++..
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCC-CCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 3467899999999999999988764 666666665553 34578999999999999999999999999999999999998
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCc--chHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCC
Q 001076 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1163)
Q Consensus 1023 ~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~--~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1163)
.+.+..+..++.+|..+....|+||||||||.+...+... ........+++.++..++++.. +.+++||+|||.++
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRPD 161 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS--SSCEEEEEEESCTT
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc--CCCEEEEEeeCCch
Confidence 8999999999999999999899999999999997655321 1223344667788888887643 46799999999999
Q ss_pred CCCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1101 ~Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
.+++++++ ||+..+.+++|+.++|.+|++.++.+..+.++.++..++..+.||+++||+.+|
T Consensus 162 ~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~ 225 (257)
T 1lv7_A 162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLV 225 (257)
T ss_dssp TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHH
Confidence 99999998 999999999999999999999999888888888899999999999999999876
No 20
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.94 E-value=1.8e-26 Score=265.71 Aligned_cols=217 Identities=49% Similarity=0.850 Sum_probs=178.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 001076 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1163)
Q Consensus 943 e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s 1022 (1163)
....+|++|+|++.+++.|.+++..++.+++.|... ..+.++|||+||||||||+||++||++++.+|+.+++.++.+
T Consensus 109 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 109 GTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGL--RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS 186 (389)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGG--GCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--
T ss_pred CCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhccc--CCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc
Confidence 346789999999999999999999998888888754 356689999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCC
Q 001076 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1102 (1163)
Q Consensus 1023 ~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~L 1102 (1163)
.+.|..+..++.+|..++...|+||||||||.|+..+.. ........+.+.|+..+++.......+++||+|||.++.|
T Consensus 187 ~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l 265 (389)
T 3vfd_A 187 KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQEL 265 (389)
T ss_dssp -----CHHHHHHHHHHHHHSSSEEEEEETGGGGC---------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCC-ccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhc
Confidence 999999999999999999999999999999999765532 2334456778888888887765556789999999999999
Q ss_pred CHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCC-CChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1103 DEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1103 d~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l-~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
++++++||+.+++++.|+.++|.+||+.++..... ..+.++..|+..++||+++||..||
T Consensus 266 ~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 266 DEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp CHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999999999999999999999987654 3667899999999999999999876
No 21
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.94 E-value=3.4e-26 Score=252.12 Aligned_cols=218 Identities=50% Similarity=0.833 Sum_probs=185.3
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001076 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1163)
Q Consensus 942 ~e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~ 1021 (1163)
.....+|++|+|++.+++.+.+.+..++.+++.|... ..++.++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 91 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGL--RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLT 91 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGG--GCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcC--CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHh
Confidence 3456789999999999999999999998888888643 35678999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCccc-CCCCEEEEEEeCCCC
Q 001076 1022 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-DKERVLVLAATNRPF 1100 (1163)
Q Consensus 1022 s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k-~~~~VlVIaTTN~p~ 1100 (1163)
..+.+..+..++.+|..+....|+||||||||.+...+... .......+.+.|+..+++.... ...+++||++||.++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 92 SKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS-EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp SSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC------CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC-cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 99999999999999999999999999999999998665431 1223345667778777776532 235799999999999
Q ss_pred CCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCC-CChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1101 DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1101 ~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l-~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
.+++++++||+..+.+++|+.++|..|++.++.+... ..+.++..|+..+.||+++||+.||
T Consensus 171 ~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 171 ELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp GBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999999999999999999999999987654 3677899999999999999998876
No 22
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.94 E-value=6.1e-26 Score=244.36 Aligned_cols=214 Identities=35% Similarity=0.549 Sum_probs=168.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~ 1024 (1163)
..+|++|+|++++++.+.+.+.. +..++.|...+. .+++++||+||||||||++|+++|++++.+++.++++++...+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGA-KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHH-HHCCC------C-CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 46899999999999999998765 666677766554 3457899999999999999999999999999999999998888
Q ss_pred ccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcc---hHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCC
Q 001076 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG---EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1163)
Q Consensus 1025 ~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~---~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~ 1101 (1163)
.+..+..++.+|..+....|+||||||||.+...+.... ........++.++..+++... ..+++||+|||.++.
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vi~~tn~~~~ 157 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT--TDHVIVLASTNRADI 157 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT--TCCEEEEEEESCGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC--CCCEEEEecCCChhh
Confidence 888889999999999999999999999999976543211 012223456677777776543 368999999999999
Q ss_pred CCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChh--hHHHHHHHcCCCCHHHHHhhc
Q 001076 1102 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDV--DLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1102 Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dv--dl~~LA~~TeGySgaDLk~Lv 1162 (1163)
+++++++ ||+..++++.|+.++|.+|++.++.+..+..+. .+..|+..+.||+++||+.+|
T Consensus 158 ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 158 LDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp GGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred cCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 9999999 999999999999999999999999887765443 358899999999999999876
No 23
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.94 E-value=2.5e-26 Score=272.96 Aligned_cols=213 Identities=42% Similarity=0.686 Sum_probs=193.5
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1025 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~ 1025 (1163)
.+|++|+|++.+++.|.+.+..++.+++.|...+. .++.+|||+||||||||++|++||++++.+|+.++|+++.+.++
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~ 279 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCT
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhc
Confidence 57899999999999999999999999999988764 45589999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHH
Q 001076 1026 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEA 1105 (1163)
Q Consensus 1026 Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~a 1105 (1163)
|+.+..++.+|..|.+..|+||||||||.|.+.+... ..+....+.+.|+..+++... ..+++||+|||.++.|+++
T Consensus 280 g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~-~~~~~~~~~~~LL~~ld~~~~--~~~v~vIaaTn~~~~Ld~a 356 (489)
T 3hu3_A 280 GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDPA 356 (489)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC-CCHHHHHHHHHHHHHHHHSCT--TSCEEEEEEESCGGGBCGG
T ss_pred chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc-cchHHHHHHHHHHHHhhcccc--CCceEEEEecCCccccCHH
Confidence 9999999999999999999999999999998766432 234556788888888887643 4689999999999999999
Q ss_pred HHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1106 VVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1106 Llr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
+++ ||+..++++.|+.++|.+||+.++....+..+.++..|+..+.||+++||..||
T Consensus 357 l~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~ 415 (489)
T 3hu3_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415 (489)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred HhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHH
Confidence 999 999999999999999999999999988888888999999999999999999986
No 24
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.92 E-value=2.3e-24 Score=232.87 Aligned_cols=217 Identities=38% Similarity=0.607 Sum_probs=181.0
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001076 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1163)
Q Consensus 942 ~e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~ 1021 (1163)
..+..+|++++|+++++..+.+.+.. +..+..+...++. .+++++|+||||||||+|+++|+..++.+++.+++.++.
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~-~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGAR-IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCC-CCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCC-CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 34568999999999999999887765 4556666665543 447899999999999999999999999999999998888
Q ss_pred cccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCc--chHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCC
Q 001076 1022 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1163)
Q Consensus 1022 s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~--~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p 1099 (1163)
..+.+.....+..+|+.+....|+++||||||.+...+... ........+++.++..+++... ...++++++||.|
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~--~~~~i~~a~t~~p 164 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRP 164 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT--TCCEEEEEEESCG
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC--CCCEEEEEccCCc
Confidence 77788888889999999988889999999999887554321 1223445677888888887643 3568999999999
Q ss_pred CCCCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1100 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1100 ~~Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
+.++++++| ||+..+.++.|+.++|.+||+.+.....+..+.++..||..|+||+|+||+.+|
T Consensus 165 ~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~ 229 (254)
T 1ixz_A 165 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLL 229 (254)
T ss_dssp GGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred hhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHH
Confidence 999999998 899999999999999999999998887777888999999999999999999886
No 25
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.92 E-value=1.1e-24 Score=259.04 Aligned_cols=215 Identities=39% Similarity=0.617 Sum_probs=186.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 001076 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1163)
Q Consensus 944 ~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~ 1023 (1163)
...+|++|+|+++++..+.+.+.. +..+..|...++ ..++++||+||||||||+||++||.+++.+|+.++++++...
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~-~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGA-RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 103 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSC-CCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh
Confidence 467899999999999999998765 556777776654 445789999999999999999999999999999999999888
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCc--chHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCC
Q 001076 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1163)
Q Consensus 1024 ~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~--~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~ 1101 (1163)
+.+.....++.+|+.++...|+||||||||.+...+... .........++.++..+++... +..+++|++||.|+.
T Consensus 104 ~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~--~~~viviAatn~p~~ 181 (499)
T 2dhr_A 104 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDI 181 (499)
T ss_dssp CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS--SCCCEEEECCSCGGG
T ss_pred hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc--CccEEEEEecCChhh
Confidence 889888899999999988899999999999987655321 1233445678889999988753 367899999999999
Q ss_pred CCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1102 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1102 Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
||++++| ||+++|.|+.|+.++|.+||+.++....+.+++++..||..|.||+|+||+++|
T Consensus 182 LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv 244 (499)
T 2dhr_A 182 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLL 244 (499)
T ss_dssp SCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHH
T ss_pred cCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHH
Confidence 9999998 899999999999999999999998887788889999999999999999999886
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.91 E-value=1.7e-26 Score=250.95 Aligned_cols=219 Identities=38% Similarity=0.599 Sum_probs=179.1
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 001076 941 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1020 (1163)
Q Consensus 941 ~~e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL 1020 (1163)
+.....+|++|+|++.+++.+.+.+.. +.+++.|...+. .+++++||+||||||||+||+++|++++.+|+.+++..+
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 80 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSF 80 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSC-CCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCC-CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHH
Confidence 344567899999999999999998764 677788776553 345789999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcch---HHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeC
Q 001076 1021 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE---HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1097 (1163)
Q Consensus 1021 ~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~---~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN 1097 (1163)
...+.|..+..++.+|..+....|+||||||||.|...+..... ......+++.++..+++... ...+++||+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vi~ttn 159 (268)
T 2r62_A 81 IEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS-ENAPVIVLAATN 159 (268)
T ss_dssp TTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC-SCSCCEEEECBS
T ss_pred HHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc-CCCCEEEEEecC
Confidence 88888888777888999999989999999999999754421100 00011234556666666543 235699999999
Q ss_pred CCCCCCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1098 RPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1098 ~p~~Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
.++.+++++++ ||+..+.++.|+.++|.+||+.++....+..+.++..|+..++||+|+||+.+|
T Consensus 160 ~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~ 226 (268)
T 2r62_A 160 RPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANII 226 (268)
T ss_dssp CCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHH
T ss_pred CchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999 999999999999999999999999887777788899999999999999999876
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.91 E-value=4.7e-23 Score=226.28 Aligned_cols=215 Identities=39% Similarity=0.613 Sum_probs=179.3
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 001076 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1163)
Q Consensus 944 ~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~ 1023 (1163)
...+|++++|++++++.+.+.+.. +..+..+...++. .+++++|+||||||||+|+++|+..++.+++.+++.++...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~-~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGAR-IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 112 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCC-CCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCC-CCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHH
Confidence 467899999999999999887764 4455666655543 34679999999999999999999999999999999888777
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCc--chHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCC
Q 001076 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1163)
Q Consensus 1024 ~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~--~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~ 1101 (1163)
+.+.....+..+|+.+....|+++|+||||.+...+... .........++.++..+++... ...++++++||.|+.
T Consensus 113 ~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~--~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDI 190 (278)
T ss_dssp TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT--TCCEEEEEEESCTTS
T ss_pred HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC--CCCEEEEEecCCchh
Confidence 777777889999999998889999999999886544321 1123345667788888887643 356899999999999
Q ss_pred CCHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1102 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1102 Ld~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
++++++| ||+..+.++.|+.++|.+||+.++....+..++++..||..++||+++||+.+|
T Consensus 191 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~ 253 (278)
T 1iy2_A 191 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLL 253 (278)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHH
Confidence 9999998 899999999999999999999998887777888999999999999999999876
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.87 E-value=3e-22 Score=250.99 Aligned_cols=215 Identities=41% Similarity=0.673 Sum_probs=194.0
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccc
Q 001076 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1163)
Q Consensus 944 ~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~ 1023 (1163)
..++|++|+|++++++.|.+.+.+++.++++|...++ .++.+|||+||||||||+||++||.+++.+|+.+++.++.+.
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i-~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCC-CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 3578999999999999999999999999999987764 455899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCC
Q 001076 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1103 (1163)
Q Consensus 1024 ~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld 1103 (1163)
+.++.+..++.+|..+....|+||||||||.++..+... ..+...++...++..+++.... ..+++|+|||.++.++
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~-~~~~~~~~~~~Ll~ll~g~~~~--~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSID 354 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC-CSHHHHHHHHHHHHHHHSSCTT--SCCEEEEECSCTTTSC
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc-cchHHHHHHHHHHHHhhhhccc--ccEEEecccCCchhcC
Confidence 999999999999999999999999999999998765432 2345567788888888887543 6799999999999999
Q ss_pred HHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1104 EAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1104 ~aLlr--RFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
+++++ ||+..+.+..|+.++|.+|++.++.+..+..+.++..++..++||+++|+..+|
T Consensus 355 ~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~ 415 (806)
T 1ypw_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415 (806)
T ss_dssp TTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHH
T ss_pred HHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHH
Confidence 99998 999999999999999999999999998888888999999999999999998875
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.87 E-value=3.4e-22 Score=222.35 Aligned_cols=174 Identities=20% Similarity=0.296 Sum_probs=132.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHH----hccCCeEEEEccccccc
Q 001076 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSML 1056 (1163)
Q Consensus 981 ~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A----~k~~PsILfIDEID~L~ 1056 (1163)
.+++.++||+||||||||+||++||++++.+|+.++++++.+.+.|.++..++++|..| ++..|+||||||||.+.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 34568999999999999999999999999999999999999999999999999999999 57789999999999998
Q ss_pred cCCCCcch-HHHHHHHHHHHHHHhcCCc---------ccCCCCEEEEEEeCCCCCCCHHHHh--ccCcEEEecCCCHHHH
Q 001076 1057 GRRENPGE-HEAMRKMKNEFMVNWDGLR---------TKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNR 1124 (1163)
Q Consensus 1057 g~r~s~~~-~eal~~il~~LL~~Ldgl~---------~k~~~~VlVIaTTN~p~~Ld~aLlr--RFd~vI~I~~Pd~eeR 1124 (1163)
+++..... ......+.+.|+..+++.. .....+++||+|||.++.++++++| ||+..+. .|+.++|
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r 190 (293)
T 3t15_A 113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 190 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHH
T ss_pred CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHH
Confidence 64432111 1123356677777776443 1134679999999999999999997 8987675 6899999
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHh
Q 001076 1125 EKIIRVILAKEELASDVDLEGIANMADGYSGSDLKV 1160 (1163)
Q Consensus 1125 ~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~ 1160 (1163)
.+|++.++... ++++..++..++||+++||..
T Consensus 191 ~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 191 IGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence 99999988654 456888999999999998864
No 30
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.86 E-value=1.9e-21 Score=241.76 Aligned_cols=418 Identities=16% Similarity=0.148 Sum_probs=236.4
Q ss_pred CceeeeecCCCCCCCCCCCC-------CCC------CCC-cccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeE
Q 001076 642 SKIGVRFDRSIPEGNNLGGF-------CED------DHG-FFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLI 707 (1163)
Q Consensus 642 ~kvgV~Fd~~~~~~~~l~~~-------c~~------~~~-ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~I 707 (1163)
.+-.|.|-+|.|+|||.-.. |.. +.. |....+++- ...++.++.+..++.+++.+.. .++.|
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~-~~~~~~g~~e~~l~~~~~~~~~---~~~~i 281 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL-AGTKYRGDFEKRFKALLKQLEQ---DTNSI 281 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----CCCCCSSCHHHHHHHHHHHHSS---SSCEE
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh-ccccccchHHHHHHHHHHHHHh---cCCeE
Confidence 35578899999999986511 110 111 111111111 1145667777777777766644 67899
Q ss_pred EEEcchhhhhcCCh--hhHHHHHHHHhcC--CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCcccc
Q 001076 708 VFVKDIEKSLTGNN--DAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRL 783 (1163)
Q Consensus 708 Iffddid~~La~~~--~~~~~i~s~L~~L--~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~ 783 (1163)
|||||+|.++.... .-...+...|..+ +|++++||+++..+..+-- -+||
T Consensus 282 L~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~-----------------~~d~--------- 335 (758)
T 1r6b_X 282 LFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIF-----------------EKDR--------- 335 (758)
T ss_dssp EEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCC-----------------CCTT---------
T ss_pred EEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhhh-----------------hcCH---------
Confidence 99999999543110 0111223344333 6899999999854320000 0122
Q ss_pred ccccccchHHHHHhhhccccceeecCCchhHHHHHHHHHHHHhhhhhhccchhhHHHhhhhcCCCCcccccchhhcccC-
Q 001076 784 HDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQT- 862 (1163)
Q Consensus 784 ~~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~LpdlkgR~~Il~IHT~l~~~~L~~vdLeeLa~~tkg- 862 (1163)
+|.++|. .|.+.+|..+.+...+...... +...|.+ .+.+..+..++....+
T Consensus 336 ------------aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~----------~~~~~~v----~~~~~al~~~~~~s~~~ 388 (758)
T 1r6b_X 336 ------------ALARRFQ-KIDITEPSIEETVQIINGLKPK----------YEAHHDV----RYTAKAVRAAVELAVKY 388 (758)
T ss_dssp ------------SSGGGEE-EEECCCCCHHHHHHHHHHHHHH----------HHHHHTC----CCCHHHHHHHHHHHHHH
T ss_pred ------------HHHhCce-EEEcCCCCHHHHHHHHHHHHHH----------HHHhcCC----CCCHHHHHHHHHHhhhh
Confidence 2555676 6889999877765433321110 0111111 1222233333333332
Q ss_pred -----CchhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhhhhhhh--hhhh-hhhcccchhHHHHHH
Q 001076 863 -----LTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESK--SLKK-SLKDVVTENEFEKKL 934 (1163)
Q Consensus 863 -----~sgadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~dF~~al~eik--p~~~-slk~lv~~~e~ek~l 934 (1163)
+++ .+-.++.+|...+... +.. .....+ ...++..+..... |... ...+......++..+
T Consensus 389 i~~~~lp~-~~i~lld~a~~~~~~~--~~~--~~~~~v-------~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l 456 (758)
T 1r6b_X 389 INDRHLPD-KAIDVIDEAGARARLM--PVS--KRKKTV-------NVADIESVVARIARIPEKSVSQSDRDTLKNLGDRL 456 (758)
T ss_dssp CTTSCTTH-HHHHHHHHHHHHHHHS--SSC--CCCCSC-------CHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHH
T ss_pred cccccCch-HHHHHHHHHHHHHhcc--ccc--ccCCcc-------CHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHH
Confidence 233 3344666665443221 110 111122 3334433322211 1000 000000011111111
Q ss_pred hcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 001076 935 LADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEAGAN 1011 (1163)
Q Consensus 935 l~~iip~~e~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l---~~p~kgVLL~GPPGTGKT~LArALA~eLg~p 1011 (1163)
. .+++|++++++.+...+... ..++ .+|..++||+||||||||++|+++|+.++.+
T Consensus 457 ~-------------~~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~ 515 (758)
T 1r6b_X 457 K-------------MLVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIE 515 (758)
T ss_dssp T-------------TTSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCE
T ss_pred H-------------hhccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 1 25779999999988877532 1122 2455579999999999999999999999999
Q ss_pred EEEEecccccc-----ccccchHHHH-----HHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcC
Q 001076 1012 FINISMSSITS-----KWFGEGEKYV-----KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1081 (1163)
Q Consensus 1012 fi~Id~seL~s-----~~~Ge~E~~I-----r~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldg 1081 (1163)
|+.++|+++.. ..+|....++ ..++...++.+++||||||||.+- ..+++.|+..++.
T Consensus 516 ~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~------------~~~~~~Ll~~le~ 583 (758)
T 1r6b_X 516 LLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH------------PDVFNILLQVMDN 583 (758)
T ss_dssp EEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSC------------HHHHHHHHHHHHH
T ss_pred EEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccC------------HHHHHHHHHHhcC
Confidence 99999998754 2334332222 224455566678999999999762 3455666666653
Q ss_pred Cccc-------CCCCEEEEEEeCCCC-------------------------CCCHHHHhccCcEEEecCCCHHHHHHHHH
Q 001076 1082 LRTK-------DKERVLVLAATNRPF-------------------------DLDEAVVRRLPRRLMVNLPDAPNREKIIR 1129 (1163)
Q Consensus 1082 l~~k-------~~~~VlVIaTTN~p~-------------------------~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk 1129 (1163)
.... +-.+++||+|||... .+.++|++||+.+|.|++|+.+++..|++
T Consensus 584 ~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~ 663 (758)
T 1r6b_X 584 GTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVD 663 (758)
T ss_dssp SEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHH
T ss_pred cEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHH
Confidence 2211 125689999999753 67899999999999999999999999999
Q ss_pred HHHhhC-------C--C-CChhhHHHHHHHcC--CCCHHHHHhh
Q 001076 1130 VILAKE-------E--L-ASDVDLEGIANMAD--GYSGSDLKVD 1161 (1163)
Q Consensus 1130 ~ll~k~-------~--l-~~dvdl~~LA~~Te--GySgaDLk~L 1161 (1163)
.++.+. . + .++..++.|++... .|...+|+.+
T Consensus 664 ~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~ 707 (758)
T 1r6b_X 664 KFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARV 707 (758)
T ss_dssp HHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHH
T ss_pred HHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHH
Confidence 988642 1 1 24555777776552 4555566554
No 31
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=5.9e-22 Score=229.16 Aligned_cols=232 Identities=18% Similarity=0.178 Sum_probs=180.4
Q ss_pred ccccccccccccchhHHHHHHHhhhhhhcccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001076 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1163)
Q Consensus 449 ~~vsf~~FPYylse~Tk~~L~~~~~~hLk~~~~~-k~~~~l~~~s~rILLsgpagsE~Yqe~LaKALA~~f~a~LLilDs 527 (1163)
-+|||++ --=-|+.|..|..+.-.-|+|+++. +|+. +..+.|||.||||| -.-+||||+|++++++++.++.
T Consensus 143 p~v~~~d--IgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGT--GKTllAkAiA~e~~~~f~~v~~ 215 (405)
T 4b4t_J 143 PDSTYDM--VGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGT--GKTLLARAVAHHTDCKFIRVSG 215 (405)
T ss_dssp CSCCGGG--SCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSS--SHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCCHHH--hCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCC--CHHHHHHHHHHhhCCCceEEEh
Confidence 3678887 3334889999999998889998754 4553 23478999999994 6899999999999999887764
Q ss_pred cCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCcccccCCceee
Q 001076 528 LLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKF 607 (1163)
Q Consensus 528 ~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~ 607 (1163)
+.+
T Consensus 216 s~l----------------------------------------------------------------------------- 218 (405)
T 4b4t_J 216 AEL----------------------------------------------------------------------------- 218 (405)
T ss_dssp GGG-----------------------------------------------------------------------------
T ss_pred HHh-----------------------------------------------------------------------------
Confidence 111
Q ss_pred eccCCCCcccCCCCCCCCCcccCeeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhhH
Q 001076 608 VGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDK 687 (1163)
Q Consensus 608 ~g~~~~~~~~~~~~~~p~~g~rg~v~~~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~~~d~s~~~~~~~ 687 (1163)
.++|+|+.+
T Consensus 219 -----------------------------------------------------------------------~sk~vGese 227 (405)
T 4b4t_J 219 -----------------------------------------------------------------------VQKYIGEGS 227 (405)
T ss_dssp -----------------------------------------------------------------------SCSSTTHHH
T ss_pred -----------------------------------------------------------------------hccccchHH
Confidence 356888999
Q ss_pred HHHHHHHHHHHhhccCCCeEEEEcchhhhhcCC----h---hhHHHHHHH-HhcC-----CCCEEEEEeccccccccccC
Q 001076 688 LAINELFEVALNESKSSPLIVFVKDIEKSLTGN----N---DAYGALKSK-LENL-----PSNVVVIGSHTQLDSRKEKS 754 (1163)
Q Consensus 688 ~~l~~l~evl~~e~k~~P~IIffddid~~La~~----~---~~~~~i~s~-L~~L-----~g~VivIgs~~~~d~~~~~~ 754 (1163)
..++.+|+.+.. +.|+||||||||.++.++ . .-..++... |..| .++|+|||+||+++.
T Consensus 228 ~~vr~lF~~Ar~---~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~----- 299 (405)
T 4b4t_J 228 RMVRELFVMARE---HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI----- 299 (405)
T ss_dssp HHHHHHHHHHHH---TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS-----
T ss_pred HHHHHHHHHHHH---hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh-----
Confidence 999999998877 899999999999965531 1 111222222 2223 448999999997665
Q ss_pred CCCCceeeccCCchhhhccccCCCCccccccccccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhc
Q 001076 755 HPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKG 832 (1163)
Q Consensus 755 ~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpdlkg 832 (1163)
||| ||+| ||++++++++|+.++
T Consensus 300 -----------------LDp---------------------------------------AllRpGRfD~~I~i~lPd~~~ 323 (405)
T 4b4t_J 300 -----------------LDP---------------------------------------ALLRPGRIDRKIEFPPPSVAA 323 (405)
T ss_dssp -----------------SCH---------------------------------------HHHSTTSSCCEEECCCCCHHH
T ss_pred -----------------CCH---------------------------------------hHcCCCcCceEEEcCCcCHHH
Confidence 444 8999 999999999999999
Q ss_pred cchhhHHHhhhhcCCC-CcccccchhhcccCCchhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhhh
Q 001076 833 QSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQ 911 (1163)
Q Consensus 833 R~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~dF~~al 911 (1163)
|.+|+++|+.. -++ .+++|+.||..|.||+||||+.||++|+..|+++.. ..++..||+.|+
T Consensus 324 R~~Il~~~~~~--~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~---------------~~vt~~Df~~Al 386 (405)
T 4b4t_J 324 RAEILRIHSRK--MNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERR---------------IHVTQEDFELAV 386 (405)
T ss_dssp HHHHHHHHHTT--SBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC---------------SBCCHHHHHHHH
T ss_pred HHHHHHHHhcC--CCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC---------------CCcCHHHHHHHH
Confidence 99999999762 233 678999999999999999999999999999987532 135678888887
Q ss_pred hhhhh
Q 001076 912 SESKS 916 (1163)
Q Consensus 912 ~eikp 916 (1163)
.++.+
T Consensus 387 ~~v~~ 391 (405)
T 4b4t_J 387 GKVMN 391 (405)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 76643
No 32
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.3e-21 Score=227.30 Aligned_cols=234 Identities=18% Similarity=0.185 Sum_probs=181.4
Q ss_pred ccccccccccccccchhHHHHHHHhhhhhhcccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 001076 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1163)
Q Consensus 447 ~~~~vsf~~FPYylse~Tk~~L~~~~~~hLk~~~~~-k~~~~l~~~s~rILLsgpagsE~Yqe~LaKALA~~f~a~LLil 525 (1163)
+.-+|||++.= ==|+.|..|..+.-..|+|+++. +|+. +..+.|||.|||| .-.-+||||+|++++++++.+
T Consensus 175 ~~p~v~~~DIg--Gld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPG--TGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 175 KSPTESYSDIG--GLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPG--TGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp SSCCCCGGGTC--SCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTT--TTHHHHHHHHHHHHTCEEEEE
T ss_pred cCCCCcceecC--cHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCC--chHHHHHHHHHHHhCCCEEEE
Confidence 34568888732 24889999999998889998754 4553 3347899999999 578999999999999998877
Q ss_pred eccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCcccccCCce
Q 001076 526 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 605 (1163)
Q Consensus 526 Ds~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 605 (1163)
+.+.+
T Consensus 248 ~~s~l--------------------------------------------------------------------------- 252 (437)
T 4b4t_I 248 VGSEL--------------------------------------------------------------------------- 252 (437)
T ss_dssp ESGGG---------------------------------------------------------------------------
T ss_pred EHHHh---------------------------------------------------------------------------
Confidence 64211
Q ss_pred eeeccCCCCcccCCCCCCCCCcccCeeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchh
Q 001076 606 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 685 (1163)
Q Consensus 606 k~~g~~~~~~~~~~~~~~p~~g~rg~v~~~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~~~d~s~~~~~ 685 (1163)
.++|+|+
T Consensus 253 -------------------------------------------------------------------------~sk~vGe 259 (437)
T 4b4t_I 253 -------------------------------------------------------------------------IQKYLGD 259 (437)
T ss_dssp -------------------------------------------------------------------------CCSSSSH
T ss_pred -------------------------------------------------------------------------hhccCch
Confidence 3568888
Q ss_pred hHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcCC--------hhhHHHHHHHHhcC-----CCCEEEEEeccccccccc
Q 001076 686 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKE 752 (1163)
Q Consensus 686 ~~~~l~~l~evl~~e~k~~P~IIffddid~~La~~--------~~~~~~i~s~L~~L-----~g~VivIgs~~~~d~~~~ 752 (1163)
.+..++.+|+.+.+ +.|+||||||||.++..+ .+....+-..|..+ .++|+||++||+++.
T Consensus 260 sek~ir~lF~~Ar~---~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~--- 333 (437)
T 4b4t_I 260 GPRLCRQIFKVAGE---NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIET--- 333 (437)
T ss_dssp HHHHHHHHHHHHHH---TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTT---
T ss_pred HHHHHHHHHHHHHh---cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhh---
Confidence 99999999999877 899999999999965522 12222222223333 458999999997666
Q ss_pred cCCCCCceeeccCCchhhhccccCCCCccccccccccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhh
Q 001076 753 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETL 830 (1163)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpdl 830 (1163)
||| ||+| ||++++++++||.
T Consensus 334 -------------------LDp---------------------------------------ALlRpGRfD~~I~v~lPd~ 355 (437)
T 4b4t_I 334 -------------------LDP---------------------------------------ALIRPGRIDRKILFENPDL 355 (437)
T ss_dssp -------------------CCT---------------------------------------TSSCTTTEEEEECCCCCCH
T ss_pred -------------------cCH---------------------------------------HHhcCCceeEEEEcCCcCH
Confidence 555 7888 9999999999999
Q ss_pred hccchhhHHHhhhhcCCC-CcccccchhhcccCCchhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHHHHHh
Q 001076 831 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 909 (1163)
Q Consensus 831 kgR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~dF~~ 909 (1163)
++|.+|+++|+. .-++ .+++|+.||..|.||+||||+.||++|+..|+++... .+...||..
T Consensus 356 ~~R~~Il~~~l~--~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~---------------~It~eDf~~ 418 (437)
T 4b4t_I 356 STKKKILGIHTS--KMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRM---------------QVTAEDFKQ 418 (437)
T ss_dssp HHHHHHHHHHHT--TSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCS---------------CBCHHHHHH
T ss_pred HHHHHHHHHHhc--CCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC---------------ccCHHHHHH
Confidence 999999999976 2234 6789999999999999999999999999999975321 246678888
Q ss_pred hhhhhhh
Q 001076 910 IQSESKS 916 (1163)
Q Consensus 910 al~eikp 916 (1163)
|...+.+
T Consensus 419 Al~rv~~ 425 (437)
T 4b4t_I 419 AKERVMK 425 (437)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 8766543
No 33
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.7e-21 Score=226.20 Aligned_cols=234 Identities=17% Similarity=0.169 Sum_probs=182.9
Q ss_pred ccccccccccccccchhHHHHHHHhhhhhhcccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 001076 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1163)
Q Consensus 447 ~~~~vsf~~FPYylse~Tk~~L~~~~~~hLk~~~~~-k~~~~l~~~s~rILLsgpagsE~Yqe~LaKALA~~f~a~LLil 525 (1163)
+.-+|||++ -.--+..|..|..+.-..|+|++.. +++. +..+.|||.|||| .-.-+||||+|++++++++.+
T Consensus 174 ~~p~~t~~d--igGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPG--TGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 174 EKPTETYSD--VGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPG--TGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp SSCSCCGGG--SCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTT--SSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCChHh--cCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCC--CCHHHHHHHHHHHhCCCEEEE
Confidence 566789988 4667999999999999899998753 4543 3458899999999 467899999999999998877
Q ss_pred eccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCcccccCCce
Q 001076 526 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 605 (1163)
Q Consensus 526 Ds~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 605 (1163)
+.+.+
T Consensus 247 ~~s~l--------------------------------------------------------------------------- 251 (434)
T 4b4t_M 247 AAPQL--------------------------------------------------------------------------- 251 (434)
T ss_dssp EGGGG---------------------------------------------------------------------------
T ss_pred ehhhh---------------------------------------------------------------------------
Confidence 64211
Q ss_pred eeeccCCCCcccCCCCCCCCCcccCeeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchh
Q 001076 606 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 685 (1163)
Q Consensus 606 k~~g~~~~~~~~~~~~~~p~~g~rg~v~~~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~~~d~s~~~~~ 685 (1163)
.++|+|+
T Consensus 252 -------------------------------------------------------------------------~~~~vGe 258 (434)
T 4b4t_M 252 -------------------------------------------------------------------------VQMYIGE 258 (434)
T ss_dssp -------------------------------------------------------------------------CSSCSSH
T ss_pred -------------------------------------------------------------------------hhcccch
Confidence 3457888
Q ss_pred hHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcCCh--------hhHHHHHHHHhcC-----CCCEEEEEeccccccccc
Q 001076 686 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTGNN--------DAYGALKSKLENL-----PSNVVVIGSHTQLDSRKE 752 (1163)
Q Consensus 686 ~~~~l~~l~evl~~e~k~~P~IIffddid~~La~~~--------~~~~~i~s~L~~L-----~g~VivIgs~~~~d~~~~ 752 (1163)
.+..++.+|+.+.. +.|+||||||||.++.++. .....+...|..| .++|+|||+||+++.
T Consensus 259 se~~ir~lF~~A~~---~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~--- 332 (434)
T 4b4t_M 259 GAKLVRDAFALAKE---KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV--- 332 (434)
T ss_dssp HHHHHHHHHHHHHH---HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC---
T ss_pred HHHHHHHHHHHHHh---cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh---
Confidence 89999999998877 8999999999999666321 1111222233333 338999999997666
Q ss_pred cCCCCCceeeccCCchhhhccccCCCCccccccccccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhh
Q 001076 753 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETL 830 (1163)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpdl 830 (1163)
||| ||+| ||++++++++|+.
T Consensus 333 -------------------LD~---------------------------------------AllRpGRfD~~I~i~lPd~ 354 (434)
T 4b4t_M 333 -------------------LDP---------------------------------------ALLRSGRLDRKIEFPLPSE 354 (434)
T ss_dssp -------------------CCT---------------------------------------TTCSTTSEEEEEECCCCCH
T ss_pred -------------------cCH---------------------------------------hHhcCCceeEEEEeCCcCH
Confidence 555 7777 9999999999999
Q ss_pred hccchhhHHHhhhhcCCC-CcccccchhhcccCCchhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHHHHHh
Q 001076 831 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 909 (1163)
Q Consensus 831 kgR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~dF~~ 909 (1163)
++|.+|+++|+.. -.+ .+++|+.||..|.||+|+||+.||++|+..|+++... .+...||..
T Consensus 355 ~~R~~Il~~~~~~--~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~---------------~i~~~Df~~ 417 (434)
T 4b4t_M 355 DSRAQILQIHSRK--MTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQS---------------SVKHEDFVE 417 (434)
T ss_dssp HHHHHHHHHHHHH--SCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCS---------------SBCHHHHHH
T ss_pred HHHHHHHHHHhcC--CCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC---------------CcCHHHHHH
Confidence 9999999999762 233 6789999999999999999999999999999875321 245678888
Q ss_pred hhhhhhh
Q 001076 910 IQSESKS 916 (1163)
Q Consensus 910 al~eikp 916 (1163)
++.++++
T Consensus 418 Al~~v~~ 424 (434)
T 4b4t_M 418 GISEVQA 424 (434)
T ss_dssp HHHSCSS
T ss_pred HHHHHhC
Confidence 8777654
No 34
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.83 E-value=3.1e-20 Score=231.24 Aligned_cols=192 Identities=17% Similarity=0.228 Sum_probs=132.3
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccc
Q 001076 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWF 1025 (1163)
Q Consensus 949 ddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~~~ 1025 (1163)
.+++|++.+++.+.+.+...... .....+|..++||+||||||||++|+++|+.+ +.+|+.++|+++...+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~-----~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~ 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAG-----LKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHS 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTT-----CSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcc-----cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccc
Confidence 46899999999998888642210 00112343469999999999999999999998 78999999999887665
Q ss_pred cchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcc-------cCCCCEEEEEEeCC
Q 001076 1026 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-------KDKERVLVLAATNR 1098 (1163)
Q Consensus 1026 Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~-------k~~~~VlVIaTTN~ 1098 (1163)
.. ...++...++.+++||||||||.+- ..+++.|+..++.... ....+++||+|||.
T Consensus 566 ~~----~~~l~~~~~~~~~~vl~lDEi~~~~------------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 566 TS----GGQLTEKVRRKPYSVVLLDAIEKAH------------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp CC-------CHHHHHHCSSSEEEEECGGGSC------------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred cc----cchhhHHHHhCCCeEEEEeCccccC------------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 54 2233444555677999999999772 2344555555543211 12357899999997
Q ss_pred CCC------------CCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhC-------CC---CChhhHHHHHHHcC--CCC
Q 001076 1099 PFD------------LDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-------EL---ASDVDLEGIANMAD--GYS 1154 (1163)
Q Consensus 1099 p~~------------Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~-------~l---~~dvdl~~LA~~Te--GyS 1154 (1163)
+.. +.++|++||+.+|.|++|+.+++.+|++.++... .. .++..++.|++... .+.
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~ 709 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYG 709 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTT
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCC
Confidence 554 8899999999999999999999999999988652 11 13444566655422 344
Q ss_pred HHHHHhh
Q 001076 1155 GSDLKVD 1161 (1163)
Q Consensus 1155 gaDLk~L 1161 (1163)
..+|+.+
T Consensus 710 ~R~L~~~ 716 (758)
T 3pxi_A 710 ARPLRRA 716 (758)
T ss_dssp TTTHHHH
T ss_pred ChHHHHH
Confidence 4555543
No 35
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=9e-21 Score=221.99 Aligned_cols=232 Identities=18% Similarity=0.126 Sum_probs=180.3
Q ss_pred cccccccccccccchhHHHHHHHhhhhhhcccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001076 448 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1163)
Q Consensus 448 ~~~vsf~~FPYylse~Tk~~L~~~~~~hLk~~~~~-k~~~~l~~~s~rILLsgpagsE~Yqe~LaKALA~~f~a~LLilD 526 (1163)
.-+|||++ ----|..|..|..+....|+|++.. +|+- ...+.|||.||||| -.-+||||+|++++++++.++
T Consensus 203 ~P~vt~~D--IgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi---~pprGILLyGPPGT--GKTlLAkAiA~e~~~~fi~vs 275 (467)
T 4b4t_H 203 KPDVTYSD--VGGCKDQIEKLREVVELPLLSPERFATLGI---DPPKGILLYGPPGT--GKTLCARAVANRTDATFIRVI 275 (467)
T ss_dssp SCSCCCSS--CTTCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCSEEEECSCTTS--SHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCHHH--hccHHHHHHHHHHHHHHHhcCHHHHHHCCC---CCCCceEeeCCCCC--cHHHHHHHHHhccCCCeEEEE
Confidence 34688888 4556889999999998899998754 4553 34678999999994 678999999999999887776
Q ss_pred ccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCcccccCCcee
Q 001076 527 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 606 (1163)
Q Consensus 527 s~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk 606 (1163)
.+.+
T Consensus 276 ~s~L---------------------------------------------------------------------------- 279 (467)
T 4b4t_H 276 GSEL---------------------------------------------------------------------------- 279 (467)
T ss_dssp GGGG----------------------------------------------------------------------------
T ss_pred hHHh----------------------------------------------------------------------------
Confidence 4211
Q ss_pred eeccCCCCcccCCCCCCCCCcccCeeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhh
Q 001076 607 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 686 (1163)
Q Consensus 607 ~~g~~~~~~~~~~~~~~p~~g~rg~v~~~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~~~d~s~~~~~~ 686 (1163)
.++|+|+.
T Consensus 280 ------------------------------------------------------------------------~sk~vGes 287 (467)
T 4b4t_H 280 ------------------------------------------------------------------------VQKYVGEG 287 (467)
T ss_dssp ------------------------------------------------------------------------CCCSSSHH
T ss_pred ------------------------------------------------------------------------hcccCCHH
Confidence 35578888
Q ss_pred HHHHHHHHHHHHhhccCCCeEEEEcchhhhhcCC----hhhH---HH-HHHHHhcC-----CCCEEEEEecccccccccc
Q 001076 687 KLAINELFEVALNESKSSPLIVFVKDIEKSLTGN----NDAY---GA-LKSKLENL-----PSNVVVIGSHTQLDSRKEK 753 (1163)
Q Consensus 687 ~~~l~~l~evl~~e~k~~P~IIffddid~~La~~----~~~~---~~-i~s~L~~L-----~g~VivIgs~~~~d~~~~~ 753 (1163)
+..++.+|+.+.. +.|+||||||||.++.++ ...+ .. +-..|..+ .++|+||++||+++.
T Consensus 288 ek~ir~lF~~Ar~---~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~---- 360 (467)
T 4b4t_H 288 ARMVRELFEMART---KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNT---- 360 (467)
T ss_dssp HHHHHHHHHHHHH---TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTS----
T ss_pred HHHHHHHHHHHHh---cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCccc----
Confidence 9999999998877 899999999999966532 1111 11 22222222 458999999997665
Q ss_pred CCCCCceeeccCCchhhhccccCCCCccccccccccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhh
Q 001076 754 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLK 831 (1163)
Q Consensus 754 ~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpdlk 831 (1163)
||| ||+| ||++++++++|+.+
T Consensus 361 ------------------LDp---------------------------------------ALlRpGRFD~~I~i~lPd~~ 383 (467)
T 4b4t_H 361 ------------------LDP---------------------------------------ALLRPGRIDRKVEFSLPDLE 383 (467)
T ss_dssp ------------------BCH---------------------------------------HHHSTTTCCEEECCCCCCHH
T ss_pred ------------------CCh---------------------------------------hhhccccccEEEEeCCcCHH
Confidence 444 8999 99999999999999
Q ss_pred ccchhhHHHhhhhcCCC-CcccccchhhcccCCchhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhh
Q 001076 832 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGI 910 (1163)
Q Consensus 832 gR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~dF~~a 910 (1163)
+|.+|+++|+.. -++ .+++++.||..|.||+|+||+.||++|+..|+++... .+...||..+
T Consensus 384 ~R~~Ilk~~l~~--~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~---------------~it~~Df~~A 446 (467)
T 4b4t_H 384 GRANIFRIHSKS--MSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK---------------VATEKDFLKA 446 (467)
T ss_dssp HHHHHHHHHHTT--SCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCS---------------SBCHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCC---------------ccCHHHHHHH
Confidence 999999999762 234 6789999999999999999999999999999976432 2456788888
Q ss_pred hhhhh
Q 001076 911 QSESK 915 (1163)
Q Consensus 911 l~eik 915 (1163)
+.++.
T Consensus 447 l~kV~ 451 (467)
T 4b4t_H 447 VDKVI 451 (467)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76664
No 36
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.82 E-value=7.2e-21 Score=222.75 Aligned_cols=233 Identities=17% Similarity=0.150 Sum_probs=180.0
Q ss_pred cccccccccccccchhHHHHHHHhhhhhhcccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001076 448 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1163)
Q Consensus 448 ~~~vsf~~FPYylse~Tk~~L~~~~~~hLk~~~~~-k~~~~l~~~s~rILLsgpagsE~Yqe~LaKALA~~f~a~LLilD 526 (1163)
.-+|||++ .---|..|..|..+.-.-|+|++.. +|+. +..+.|||.|||| .-.-+||||||++++++++.++
T Consensus 175 ~p~v~~~d--igGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPG--tGKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 175 QGEITFDG--IGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPG--TGKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp SCSSCSGG--GCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTT--SSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCChhH--hCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCC--CcHHHHHHHHHHHhCCCEEEEe
Confidence 45788887 3456889999999988889998754 4553 3457899999999 5789999999999999988776
Q ss_pred ccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCcccccCCcee
Q 001076 527 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 606 (1163)
Q Consensus 527 s~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk 606 (1163)
.+.+
T Consensus 248 ~s~l---------------------------------------------------------------------------- 251 (437)
T 4b4t_L 248 ASGI---------------------------------------------------------------------------- 251 (437)
T ss_dssp GGGT----------------------------------------------------------------------------
T ss_pred hhhh----------------------------------------------------------------------------
Confidence 4211
Q ss_pred eeccCCCCcccCCCCCCCCCcccCeeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhh
Q 001076 607 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 686 (1163)
Q Consensus 607 ~~g~~~~~~~~~~~~~~p~~g~rg~v~~~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~~~d~s~~~~~~ 686 (1163)
.++|+|+.
T Consensus 252 ------------------------------------------------------------------------~sk~~Ges 259 (437)
T 4b4t_L 252 ------------------------------------------------------------------------VDKYIGES 259 (437)
T ss_dssp ------------------------------------------------------------------------CCSSSSHH
T ss_pred ------------------------------------------------------------------------ccccchHH
Confidence 35577888
Q ss_pred HHHHHHHHHHHHhhccCCCeEEEEcchhhhhcCC-------h-hhHHHHHHHHhcC-----CCCEEEEEecccccccccc
Q 001076 687 KLAINELFEVALNESKSSPLIVFVKDIEKSLTGN-------N-DAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEK 753 (1163)
Q Consensus 687 ~~~l~~l~evl~~e~k~~P~IIffddid~~La~~-------~-~~~~~i~s~L~~L-----~g~VivIgs~~~~d~~~~~ 753 (1163)
+..++.+|+.+.. ++|+||||||||.++.++ . .....+-..|..+ .++|+||++||+++.
T Consensus 260 e~~ir~~F~~A~~---~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~---- 332 (437)
T 4b4t_L 260 ARIIREMFAYAKE---HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT---- 332 (437)
T ss_dssp HHHHHHHHHHHHH---SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS----
T ss_pred HHHHHHHHHHHHh---cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh----
Confidence 8899999988877 999999999999965521 1 1221222223333 348999999997666
Q ss_pred CCCCCceeeccCCchhhhccccCCCCccccccccccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhh
Q 001076 754 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLK 831 (1163)
Q Consensus 754 ~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpdlk 831 (1163)
||| ||+| ||++++++++|+..
T Consensus 333 ------------------LDp---------------------------------------AllRpGRfD~~I~i~lPd~~ 355 (437)
T 4b4t_L 333 ------------------LDP---------------------------------------ALLRPGRLDRKVEIPLPNEA 355 (437)
T ss_dssp ------------------SCT---------------------------------------TTTSTTSEEEEECCCCCCHH
T ss_pred ------------------hCH---------------------------------------HHhCCCccceeeecCCcCHH
Confidence 555 6777 79999999999999
Q ss_pred ccchhhHHHhhhhcCCC-CcccccchhhcccCCchhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhh
Q 001076 832 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGI 910 (1163)
Q Consensus 832 gR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~dF~~a 910 (1163)
+|..|+++|+... .+ .+++|+.||..|.||+|+||+.||.+|+.+|+++... .+...||..+
T Consensus 356 ~R~~Il~~~~~~~--~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~---------------~i~~~d~~~A 418 (437)
T 4b4t_L 356 GRLEIFKIHTAKV--KKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRD---------------HINPDDLMKA 418 (437)
T ss_dssp HHHHHHHHHHHTS--CBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCS---------------SBCHHHHHHH
T ss_pred HHHHHHHHHhcCC--CCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC---------------CCCHHHHHHH
Confidence 9999999997621 23 6789999999999999999999999999999875321 2456788888
Q ss_pred hhhhhh
Q 001076 911 QSESKS 916 (1163)
Q Consensus 911 l~eikp 916 (1163)
+.++.+
T Consensus 419 l~~v~~ 424 (437)
T 4b4t_L 419 VRKVAE 424 (437)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776654
No 37
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=3.3e-20 Score=216.77 Aligned_cols=231 Identities=19% Similarity=0.219 Sum_probs=179.9
Q ss_pred ccccccccccccccchhHHHHHHHhhhhhhcccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 001076 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1163)
Q Consensus 447 ~~~~vsf~~FPYylse~Tk~~L~~~~~~hLk~~~~~-k~~~~l~~~s~rILLsgpagsE~Yqe~LaKALA~~f~a~LLil 525 (1163)
+.-+|||++ -.=-+..|.-|..+....|+|+++. +++. +..+.|||.|||| .-.-+||||+|++++++++.+
T Consensus 165 ~~p~v~~~d--igGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPG--tGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 165 EKPDVTYAD--VGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPG--TGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp SSCSCCGGG--SCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTT--TTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCHHH--hccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCC--CCHHHHHHHHHHHhCCCeEEE
Confidence 345688888 5556899999999999999998754 4553 3356799999999 578999999999999988877
Q ss_pred eccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCcccccCCce
Q 001076 526 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 605 (1163)
Q Consensus 526 Ds~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 605 (1163)
+.+.+
T Consensus 238 ~~~~l--------------------------------------------------------------------------- 242 (428)
T 4b4t_K 238 NGSEF--------------------------------------------------------------------------- 242 (428)
T ss_dssp EGGGT---------------------------------------------------------------------------
T ss_pred ecchh---------------------------------------------------------------------------
Confidence 64211
Q ss_pred eeeccCCCCcccCCCCCCCCCcccCeeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchh
Q 001076 606 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 685 (1163)
Q Consensus 606 k~~g~~~~~~~~~~~~~~p~~g~rg~v~~~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~~~d~s~~~~~ 685 (1163)
.++|+|+
T Consensus 243 -------------------------------------------------------------------------~~~~~Ge 249 (428)
T 4b4t_K 243 -------------------------------------------------------------------------VHKYLGE 249 (428)
T ss_dssp -------------------------------------------------------------------------CCSSCSH
T ss_pred -------------------------------------------------------------------------hccccch
Confidence 3457788
Q ss_pred hHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcCC-------hhhHHHHHHHHh----cC--CCCEEEEEeccccccccc
Q 001076 686 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN-------NDAYGALKSKLE----NL--PSNVVVIGSHTQLDSRKE 752 (1163)
Q Consensus 686 ~~~~l~~l~evl~~e~k~~P~IIffddid~~La~~-------~~~~~~i~s~L~----~L--~g~VivIgs~~~~d~~~~ 752 (1163)
.+..++.+|+.+.. +.|+||||||||.++.++ +....++++.|+ .+ ..+|+||++||+++.
T Consensus 250 ~e~~ir~lF~~A~~---~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~--- 323 (428)
T 4b4t_K 250 GPRMVRDVFRLARE---NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADT--- 323 (428)
T ss_dssp HHHHHHHHHHHHHH---TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSS---
T ss_pred hHHHHHHHHHHHHH---cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh---
Confidence 88999999998876 899999999999966532 222334444433 33 448999999997665
Q ss_pred cCCCCCceeeccCCchhhhccccCCCCccccccccccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHh-hhh
Q 001076 753 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERD-VET 829 (1163)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~-Lpd 829 (1163)
||| ||+| ||+++++++ +|+
T Consensus 324 -------------------LD~---------------------------------------AllRpGRfd~~I~~p~lPd 345 (428)
T 4b4t_K 324 -------------------LDP---------------------------------------ALLRPGRLDRKIEFPSLRD 345 (428)
T ss_dssp -------------------CCH---------------------------------------HHHSSSSEEEEEECCSSCC
T ss_pred -------------------cCh---------------------------------------hhhcCCcceEEEEcCCCCC
Confidence 554 8988 999999995 999
Q ss_pred hhccchhhHHHhhhhcCCC-CcccccchhhcccCCchhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHHHHH
Q 001076 830 LKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQ 908 (1163)
Q Consensus 830 lkgR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~dF~ 908 (1163)
..+|..|+++|+. ..++ .+++|+.||..|.||+|+||+.+|++|+..|+++... .+...||+
T Consensus 346 ~~~R~~Il~~~~~--~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~---------------~i~~~d~~ 408 (428)
T 4b4t_K 346 RRERRLIFGTIAS--KMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRY---------------VILQSDLE 408 (428)
T ss_dssp HHHHHHHHHHHHH--SSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCS---------------SBCHHHHH
T ss_pred HHHHHHHHHHHhc--CCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC---------------CCCHHHHH
Confidence 9999999999976 2234 6789999999999999999999999999999975321 24567887
Q ss_pred hhhhh
Q 001076 909 GIQSE 913 (1163)
Q Consensus 909 ~al~e 913 (1163)
.|...
T Consensus 409 ~A~~~ 413 (428)
T 4b4t_K 409 EAYAT 413 (428)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77544
No 38
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.78 E-value=2.7e-18 Score=216.53 Aligned_cols=197 Identities=17% Similarity=0.251 Sum_probs=136.6
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc--
Q 001076 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-- 1023 (1163)
Q Consensus 949 ddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~-- 1023 (1163)
.+++|++.+++.+...+...... . ..-.+|..++||+||||||||++|++|++.+ +.+|+.++|+++...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g---~--~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~ 632 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAG---L--KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 632 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGG---C--SCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGG
T ss_pred cccCCcHHHHHHHHHHHHHHhcc---c--CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhH
Confidence 46899999999998887542110 0 0112344689999999999999999999999 889999999876532
Q ss_pred ---cccchHHHH-----HHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCccc-------CCC
Q 001076 1024 ---WFGEGEKYV-----KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DKE 1088 (1163)
Q Consensus 1024 ---~~Ge~E~~I-----r~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k-------~~~ 1088 (1163)
.+|....++ ..+....++.+++||||||||.+- ..+++.|+..++..... +-.
T Consensus 633 ~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~------------~~~~~~Ll~~l~~~~~~~~~g~~vd~~ 700 (854)
T 1qvr_A 633 VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAH------------PDVFNILLQILDDGRLTDSHGRTVDFR 700 (854)
T ss_dssp GGGC--------------CHHHHHHHCSSEEEEESSGGGSC------------HHHHHHHHHHHTTTEECCSSSCCEECT
T ss_pred HHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccC------------HHHHHHHHHHhccCceECCCCCEeccC
Confidence 333332222 233444455667999999999762 35667777777643211 124
Q ss_pred CEEEEEEeCC--------------------------CCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhC-------
Q 001076 1089 RVLVLAATNR--------------------------PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE------- 1135 (1163)
Q Consensus 1089 ~VlVIaTTN~--------------------------p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~------- 1135 (1163)
+++||+|||. ...+.++|++||+.++.+.+|+.+++..|++.++.+.
T Consensus 701 ~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~ 780 (854)
T 1qvr_A 701 NTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEK 780 (854)
T ss_dssp TEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 7889999997 2357899999999999999999999999999988631
Q ss_pred CC---CChhhHHHHHHHcC--CCCHHHHHhhc
Q 001076 1136 EL---ASDVDLEGIANMAD--GYSGSDLKVDY 1162 (1163)
Q Consensus 1136 ~l---~~dvdl~~LA~~Te--GySgaDLk~Lv 1162 (1163)
.+ .++..++.|+.... .+...+|+.++
T Consensus 781 ~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i 812 (854)
T 1qvr_A 781 RISLELTEAAKDFLAERGYDPVFGARPLRRVI 812 (854)
T ss_dssp TCEEEECHHHHHHHHHHHCBTTTBTSTHHHHH
T ss_pred CceEEECHHHHHHHHHcCCCCCCChHHHHHHH
Confidence 11 24556777887765 56667776653
No 39
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.77 E-value=1.1e-20 Score=222.28 Aligned_cols=199 Identities=21% Similarity=0.235 Sum_probs=137.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecccccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITS 1022 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg--~pfi~Id~seL~s 1022 (1163)
...|++++|++++++.+.+++... ..+ ..+++++||+||||||||++|+++|++++ ++|+.++++++.+
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~~~~~-------~~~--~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVIVELI-------KSK--KMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHH-------HTT--CCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhchhhccCHHHHHHHHHHHHHHH-------HhC--CCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 456899999999999988877532 112 23557999999999999999999999998 9999999999999
Q ss_pred ccccchHHHHHHHHHHH---hccCCeEEEEccccccccCCCCcchHH---HHH---------------HHHHHHHHHhcC
Q 001076 1023 KWFGEGEKYVKAVFSLA---SKIAPSVVFVDEVDSMLGRRENPGEHE---AMR---------------KMKNEFMVNWDG 1081 (1163)
Q Consensus 1023 ~~~Ge~E~~Ir~lF~~A---~k~~PsILfIDEID~L~g~r~s~~~~e---al~---------------~il~~LL~~Ldg 1081 (1163)
.+.|+.+. ++++|..| +...|+||||||||.+++.+....... ... ++.+.++..++.
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99999987 99999999 788899999999999997765431111 101 111234444432
Q ss_pred CcccCCCCEEEEEEeCCCCCCCHHHHh--ccCc--EEEecCCC--HHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCH
Q 001076 1082 LRTKDKERVLVLAATNRPFDLDEAVVR--RLPR--RLMVNLPD--APNREKIIRVILAKEELASDVDLEGIANMADGYSG 1155 (1163)
Q Consensus 1082 l~~k~~~~VlVIaTTN~p~~Ld~aLlr--RFd~--vI~I~~Pd--~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySg 1155 (1163)
.....+..++|++|||.++.++++++| ||+. .+.++.|+ .++|.+|++.+.. .+++.++..|+| |
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--g 253 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--G 253 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC--------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--h
Confidence 222223456666899999999999876 8988 56777774 5778888765542 378999999999 9
Q ss_pred HHHHhhc
Q 001076 1156 SDLKVDY 1162 (1163)
Q Consensus 1156 aDLk~Lv 1162 (1163)
+||..||
T Consensus 254 adl~~l~ 260 (456)
T 2c9o_A 254 QDILSMM 260 (456)
T ss_dssp -------
T ss_pred hHHHHHH
Confidence 9999887
No 40
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.74 E-value=1.6e-17 Score=183.44 Aligned_cols=202 Identities=16% Similarity=0.208 Sum_probs=149.9
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecccc
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSSI 1020 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l--~~p~kgVLL~GPPGTGKT~LArALA~eL-------g~pfi~Id~seL 1020 (1163)
+|+|++.+++.+.+.+..+.. +..+.+.++ ..+..++||+||||||||++|+++|+.+ ..+++.+++.++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 688999999999998876442 333333222 2344579999999999999999999998 348999999999
Q ss_pred ccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCC
Q 001076 1021 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1163)
Q Consensus 1021 ~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1163)
.+.++|..+..+..+|..+ .++||||||||.|+..+.... ....+++.|+..++.. ..+++||+++|...
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~---~~~~~~~~Ll~~l~~~----~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERD---YGQEAIEILLQVMENN----RDDLVVILAGYADR 180 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---C---CTHHHHHHHHHHHHHC----TTTCEEEEEECHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCccc---ccHHHHHHHHHHHhcC----CCCEEEEEeCChHH
Confidence 9999999988888998877 468999999999975443211 1133455566555542 35689999997643
Q ss_pred -----CCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHc------CCC-CHHHHHhhc
Q 001076 1101 -----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA------DGY-SGSDLKVDY 1162 (1163)
Q Consensus 1101 -----~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~T------eGy-SgaDLk~Lv 1162 (1163)
.+++++++||+.++.|+.|+.+++.+|++.++.+..+. ++..+..|+... ..+ .+.+|..++
T Consensus 181 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l 255 (309)
T 3syl_A 181 MENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNAL 255 (309)
T ss_dssp HHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHH
T ss_pred HHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHH
Confidence 35689999999999999999999999999999876543 445566666653 222 256666543
No 41
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.71 E-value=6.3e-17 Score=177.70 Aligned_cols=212 Identities=23% Similarity=0.327 Sum_probs=144.4
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-ccccch
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEG 1028 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s-~~~Ge~ 1028 (1163)
+++|++++++.+...+..++.+..+........++.++||+||||||||++|+++|+.++.+++.+++..+.. .++|..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 4779999999999887654322211110000124578999999999999999999999999999999998765 455533
Q ss_pred -HHHHHHHHHHH-----hccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcc------cCCCCEEEEEEe
Q 001076 1029 -EKYVKAVFSLA-----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDKERVLVLAAT 1096 (1163)
Q Consensus 1029 -E~~Ir~lF~~A-----~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~------k~~~~VlVIaTT 1096 (1163)
+..++.+|..+ ....++||||||||.+...............+.+.|+..+++... ....++++|+++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~ 175 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASG 175 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcC
Confidence 34566666533 112468999999999975543222222223345667666665321 123468888885
Q ss_pred ----CCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHH----HH-------hhCCC---CChhhHHHHHHHcC-------
Q 001076 1097 ----NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV----IL-------AKEEL---ASDVDLEGIANMAD------- 1151 (1163)
Q Consensus 1097 ----N~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~----ll-------~k~~l---~~dvdl~~LA~~Te------- 1151 (1163)
+.+..+++++++||+.++.|+.|+.+++.+|++. ++ ..... .++..++.|++.+.
T Consensus 176 ~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~ 255 (310)
T 1ofh_A 176 AFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTE 255 (310)
T ss_dssp CCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSC
T ss_pred CcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhccccc
Confidence 5678899999999998899999999999999983 22 22221 35566788887773
Q ss_pred CCCHHHHHhh
Q 001076 1152 GYSGSDLKVD 1161 (1163)
Q Consensus 1152 GySgaDLk~L 1161 (1163)
+.....|..+
T Consensus 256 ~g~~R~l~~~ 265 (310)
T 1ofh_A 256 NIGARRLHTV 265 (310)
T ss_dssp CCTTHHHHHH
T ss_pred ccCcHHHHHH
Confidence 3455665554
No 42
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.70 E-value=5.4e-17 Score=164.34 Aligned_cols=108 Identities=25% Similarity=0.384 Sum_probs=97.6
Q ss_pred CccceeccccCCCCceeeecceeEEccCCccceeecCCC---------CCccceEEEEeecC-CcceEEEEEecCCceEE
Q 001076 132 IPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPS---------ISKNLCRLRRIENG-GPSGALLEITGGKGEVE 201 (1163)
Q Consensus 132 ~pW~rL~s~~~~~p~~~i~~~~~t~G~~~~cd~~l~d~~---------~s~~~c~l~~~~~~-g~~~a~le~~~~~G~v~ 201 (1163)
.+||+|+++...++++.+....|+|||+..||+.|+|+. +|..||+|.....+ +...++|+|.|+||| |
T Consensus 28 ~~w~~L~~~~~~~~~i~L~~~~~~IGR~~~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~~~~~~i~D~StNGT-~ 106 (149)
T 1gxc_A 28 APWARLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNGT-F 106 (149)
T ss_dssp -CCEEEEECSTTCCCEEECSSEEEEESSTTCSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEEECCSSCE-E
T ss_pred CeeEEEEEcCCCCceEEECCCCEEecCCCCCCEEECCccccccccCCcCchhheEEEEECCCCceeEEEEEECCCCCe-E
Confidence 499999999999999999999999999999999999995 99999999987542 234689999999999 7
Q ss_pred EcCeecCCCceEEeeCCCEEEEccCCCeeEEeeecCccc
Q 001076 202 VNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDDT 240 (1163)
Q Consensus 202 vNg~~~~k~~~~~L~~gDev~f~~~~~~ayifq~l~~~~ 240 (1163)
|||+++.++..+.|++||+|.|+.....+|+|+++..++
T Consensus 107 VNg~~i~~~~~~~L~~GD~I~lG~~~~~~f~f~d~~~~~ 145 (149)
T 1gxc_A 107 VNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTVDD 145 (149)
T ss_dssp ETTEECCTTCEEECCTTEEEEESSTTCEEEEEEETTCC-
T ss_pred ECCEECCCCCeEECCCCCEEEECCCCCeEEEEEECCccc
Confidence 999999999999999999999999988999999987655
No 43
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.68 E-value=6.8e-17 Score=176.38 Aligned_cols=202 Identities=20% Similarity=0.215 Sum_probs=134.8
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc-cccccch
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKWFGEG 1028 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~-s~~~Ge~ 1028 (1163)
.++|.+...+.+........ ..+.... ..++.++||+||||||||+||+++|+.++.+|+.+++++.. +...+..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~---~~l~~~~-~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLV---QQTKNSD-RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHH---HHHHHCS-SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred CCCCccHHHHHHHHHHHHHH---HHHhccC-CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 46677666555554311100 1111111 34557899999999999999999999999999999987632 1111222
Q ss_pred HHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCH-HHH
Q 001076 1029 EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE-AVV 1107 (1163)
Q Consensus 1029 E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~-aLl 1107 (1163)
...++.+|..+....++||||||||.|++.+.... .....+++.|...+++... ...+++||+|||.++.+++ .++
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~l~~L~~~~~~~~~-~~~~~~ii~ttn~~~~l~~~~l~ 186 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP--RFSNLVLQALLVLLKKAPP-QGRKLLIIGTTSRKDVLQEMEML 186 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT--BCCHHHHHHHHHHTTCCCS-TTCEEEEEEEESCHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh--hHHHHHHHHHHHHhcCccC-CCCCEEEEEecCChhhcchhhhh
Confidence 35678899999888899999999999976543211 1123445555555655432 3467999999999988887 677
Q ss_pred hccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCC----CHHHHHhh
Q 001076 1108 RRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGY----SGSDLKVD 1161 (1163)
Q Consensus 1108 rRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGy----SgaDLk~L 1161 (1163)
+||...+.+ |+..+|.+|.+.+..... .++.++..|++.+.|| ...++.++
T Consensus 187 ~rf~~~i~~--p~l~~r~~i~~i~~~~~~-~~~~~~~~l~~~~~g~~~~g~ir~l~~~ 241 (272)
T 1d2n_A 187 NAFSTTIHV--PNIATGEQLLEALELLGN-FKDKERTTIAQQVKGKKVWIGIKKLLML 241 (272)
T ss_dssp TTSSEEEEC--CCEEEHHHHHHHHHHHTC-SCHHHHHHHHHHHTTSEEEECHHHHHHH
T ss_pred cccceEEcC--CCccHHHHHHHHHHhcCC-CCHHHHHHHHHHhcCCCccccHHHHHHH
Confidence 899877666 455555555555544433 4677899999999998 45555443
No 44
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.66 E-value=1.1e-15 Score=171.44 Aligned_cols=180 Identities=19% Similarity=0.262 Sum_probs=134.5
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1025 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~ 1025 (1163)
.+|++++|++..++.+...+..... . ..+..+|||+||||||||++|+++|+.++.+|+.+++..+.
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~-------~--~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~---- 92 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKK-------R--NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE---- 92 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHH-------T--TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC----
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHh-------c--CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc----
Confidence 4799999999999999988864321 1 22446899999999999999999999999999999987653
Q ss_pred cchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCc--------------ccCCCCEE
Q 001076 1026 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR--------------TKDKERVL 1091 (1163)
Q Consensus 1026 Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~--------------~k~~~~Vl 1091 (1163)
....+..++.. ...+++|||||||.+. . .+.+.|+..++... .....+++
T Consensus 93 --~~~~~~~~~~~--~~~~~vl~lDEi~~l~-----~-------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 93 --KSGDLAAILTN--LSEGDILFIDEIHRLS-----P-------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp --SHHHHHHHHHT--CCTTCEEEEETGGGCC-----H-------HHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred --chhHHHHHHHh--ccCCCEEEEechhhcC-----H-------HHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 12233444432 2457999999999883 1 12223333332211 00112589
Q ss_pred EEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCC
Q 001076 1092 VLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1154 (1163)
Q Consensus 1092 VIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGyS 1154 (1163)
+|++||....+++++++||+.++.++.|+.+++..+++.++....+. ++..+..|+..+.|+.
T Consensus 157 ~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~ 220 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTP 220 (338)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCH
T ss_pred EEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999876643 5566788888777754
No 45
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=99.65 E-value=2.6e-16 Score=152.54 Aligned_cols=105 Identities=27% Similarity=0.465 Sum_probs=92.2
Q ss_pred CccceeccccC--CCCceeeecceeEEccCCccceeecCC-CCCccceEEEEeecCCcceEEEEEecCCceEEEcCeecC
Q 001076 132 IPWARLISQCS--QNSHLSMTGAVFTVGHNRQCDLYLKDP-SISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHP 208 (1163)
Q Consensus 132 ~pW~rL~s~~~--~~p~~~i~~~~~t~G~~~~cd~~l~d~-~~s~~~c~l~~~~~~g~~~a~le~~~~~G~v~vNg~~~~ 208 (1163)
.|||+|+++.. ..+.+.+....++|||+..||+.|.|+ .+|..||+|....++|. ++|+|.|+||| +|||+++.
T Consensus 2 ~~wg~L~~~~~~~~~~~~~l~~~~~~iGR~~~~di~l~~~~~vSr~Ha~i~~~~~~~~--~~l~D~S~NGt-~vng~~l~ 78 (116)
T 1lgp_A 2 QPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDHCRIVVDEKSGQ--VTLEDTSTSGT-VINKLKVV 78 (116)
T ss_dssp CCCEEECCTTCCSSSCCEEECSSEEEEESSTTSSEECTTCTTSCTTCEEEEECTTTCC--EEEEECSSSCC-CCCCCCCC
T ss_pred CCEEEEEEeCCCCCccEEEECCCCEEECCCCCCCEEeCCCCCCChhHeEEEEECCCCe--EEEEECCcCCc-EECCEEcC
Confidence 49999999864 566899999999999999999999885 89999999997644554 78899888999 79999999
Q ss_pred CCceEEeeCCCEEEEccCC-----CeeEEeeecCcc
Q 001076 209 KDSQVVLRGGDELVFSPSG-----KHSYIFQQLSDD 239 (1163)
Q Consensus 209 k~~~~~L~~gDev~f~~~~-----~~ayifq~l~~~ 239 (1163)
++..+.|+.||+|.|+... +.+|+|+++..+
T Consensus 79 ~~~~~~L~~GD~i~~G~~~~~~~~~~~f~f~~~~~~ 114 (116)
T 1lgp_A 79 KKQTCPLQTGDVIYLVYRKNEPEHNVAYLYESLSEK 114 (116)
T ss_dssp CSSCCCCCTTCEEEEECCSSCGGGCEEEECCCSCC-
T ss_pred CCCcEECCCCCEEEEeccCCCCCceEEEEEEccccc
Confidence 9999999999999999875 789999988654
No 46
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.64 E-value=2e-15 Score=170.66 Aligned_cols=192 Identities=19% Similarity=0.204 Sum_probs=135.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecccccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSITS 1022 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~--pfi~Id~seL~s 1022 (1163)
..+|++++|++..++.+..++... ..+ ..+++++||+||||||||++|+++|+.++. +|+.+++..+..
T Consensus 40 ~~~~~~ivG~~~~~~~l~~l~~~~-------~~~--~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 40 RQASQGMVGQLAARRAAGVVLEMI-------REG--KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHH-------HTT--CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred CcchhhccChHHHHHHHHHHHHHH-------HcC--CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 345999999999988876555321 112 223478999999999999999999999974 888888766443
Q ss_pred ccccc-------------------------------------------------hHHHHHHHHHHHhc---------cCC
Q 001076 1023 KWFGE-------------------------------------------------GEKYVKAVFSLASK---------IAP 1044 (1163)
Q Consensus 1023 ~~~Ge-------------------------------------------------~E~~Ir~lF~~A~k---------~~P 1044 (1163)
.+.+. ....++..|..+.. ..|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 33222 23344444444332 126
Q ss_pred eEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEe-----------CCCCCCCHHHHhccCcE
Q 001076 1045 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-----------NRPFDLDEAVVRRLPRR 1113 (1163)
Q Consensus 1045 sILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTT-----------N~p~~Ld~aLlrRFd~v 1113 (1163)
+||||||||.|. ....+.|+..++.. ..+++++++. |.+..+++++++||. .
T Consensus 191 ~vl~IDEi~~l~------------~~~~~~L~~~le~~----~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~-~ 253 (368)
T 3uk6_A 191 GVLFIDEVHMLD------------IESFSFLNRALESD----MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLL-I 253 (368)
T ss_dssp CEEEEESGGGSB------------HHHHHHHHHHTTCT----TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEE-E
T ss_pred ceEEEhhccccC------------hHHHHHHHHHhhCc----CCCeeeeecccceeeeeccCCCCcccCCHHHHhhcc-E
Confidence 899999999883 23344555555432 2356655554 347889999999995 5
Q ss_pred EEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1114 LMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1114 I~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
+.|++|+.+++.+|++..+...++. ++..++.|+..+.|.++.++..++
T Consensus 254 i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 254 VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 8999999999999999998875543 566789999999866777766654
No 47
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.64 E-value=3.9e-16 Score=177.73 Aligned_cols=212 Identities=21% Similarity=0.292 Sum_probs=144.4
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhh-cCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-ccccch
Q 001076 951 IGALENVKDTLKELVMLPLQRPELFC-KGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEG 1028 (1163)
Q Consensus 951 I~Gleevk~~L~e~V~lpl~~pelf~-k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s-~~~Ge~ 1028 (1163)
|+|++.+++.+...+.....+..... ......++.+|||+||||||||++|++||+.++.+|+.++++.+.. .|+|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 57999999999888854332211110 1122335678999999999999999999999999999999998874 377765
Q ss_pred -HHHHHHHHHHH----hccCCeEEEEccccccccCCCCcc--hHHHHHHHHHHHHHHhcCCcc-----------------
Q 001076 1029 -EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRT----------------- 1084 (1163)
Q Consensus 1029 -E~~Ir~lF~~A----~k~~PsILfIDEID~L~g~r~s~~--~~eal~~il~~LL~~Ldgl~~----------------- 1084 (1163)
+..+..+|..+ ....++||||||||.+...+.... .......+.+.|+..|++...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 56777788776 445679999999999976543321 111223467777777774210
Q ss_pred cCCCCEEEEEEeCCC----------CC-----------------------------------CCHHHHhccCcEEEecCC
Q 001076 1085 KDKERVLVLAATNRP----------FD-----------------------------------LDEAVVRRLPRRLMVNLP 1119 (1163)
Q Consensus 1085 k~~~~VlVIaTTN~p----------~~-----------------------------------Ld~aLlrRFd~vI~I~~P 1119 (1163)
-...++++|+++|.. .. +.++|++||+.++.+.+|
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl 256 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNEL 256 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCC
Confidence 012355666666642 11 789999999999999999
Q ss_pred CHHHHHHHHHH----HHhh-------CCC---CChhhHHHHHHH--cCCCCHHHHHhhc
Q 001076 1120 DAPNREKIIRV----ILAK-------EEL---ASDVDLEGIANM--ADGYSGSDLKVDY 1162 (1163)
Q Consensus 1120 d~eeR~eILk~----ll~k-------~~l---~~dvdl~~LA~~--TeGySgaDLk~Lv 1162 (1163)
+.+++.+|+.. ++.+ ... .++..++.|+.. ...+.+.+|++++
T Consensus 257 ~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~i 315 (363)
T 3hws_A 257 SEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIV 315 (363)
T ss_dssp CHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHH
Confidence 99999999886 3322 122 245557777753 3455566676543
No 48
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=170.98 Aligned_cols=138 Identities=17% Similarity=0.262 Sum_probs=104.8
Q ss_pred cchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcC----ChhhHHHHHHHH----hcC---CCCEEEEEeccccccc
Q 001076 682 GDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG----NNDAYGALKSKL----ENL---PSNVVVIGSHTQLDSR 750 (1163)
Q Consensus 682 ~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~----~~~~~~~i~s~L----~~L---~g~VivIgs~~~~d~~ 750 (1163)
|.++.+..++.+|+.+.. .+|.||||||||.+... ..+....++..| ..+ .++|+|||++|+++.
T Consensus 86 ~~g~~~~~~~~lf~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~- 161 (322)
T 1xwi_A 86 WLGESEKLVKNLFQLARE---NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWV- 161 (322)
T ss_dssp SCCSCHHHHHHHHHHHHH---TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTT-
T ss_pred hhhHHHHHHHHHHHHHHh---cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCccc-
Confidence 444456677778877655 78999999999995442 223333444433 333 468999999995432
Q ss_pred cccCCCCCceeeccCCchhhhccccCCCCccccccccccchHHHHHhhhccccceeecCCchhHHHHHHHHHHHHhhhhh
Q 001076 751 KEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETL 830 (1163)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpdl 830 (1163)
|| ++++|||++.+++++|+.
T Consensus 162 ---------------------ld---------------------------------------~al~rRf~~~i~i~~P~~ 181 (322)
T 1xwi_A 162 ---------------------LD---------------------------------------SAIRRRFEKRIYIPLPEP 181 (322)
T ss_dssp ---------------------SC---------------------------------------HHHHHTCCEEEECCCCCH
T ss_pred ---------------------CC---------------------------------------HHHHhhcCeEEEeCCcCH
Confidence 22 278888888888899998
Q ss_pred hccchhhHHHhhhhcCCCCcccccchhhcccCCchhhhhhHHhHHhhhhhhhc
Q 001076 831 KGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 883 (1163)
Q Consensus 831 kgR~~Il~IHT~l~~~~L~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al~r~ 883 (1163)
..|..|+++|.......+++.+++.|+..+.||+|+||+.||+.|+..++++.
T Consensus 182 ~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~ 234 (322)
T 1xwi_A 182 HARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKV 234 (322)
T ss_dssp HHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999987644445688999999999999999999999999999998764
No 49
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.61 E-value=1.2e-15 Score=153.59 Aligned_cols=158 Identities=22% Similarity=0.368 Sum_probs=115.0
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL----------g~pfi~I 1015 (1163)
..|++++|.++..+.+.+.+.. ..+.++||+||||+|||++|+++++.+ +.+++.+
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred ccccccccchHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 3577899999999888887632 123679999999999999999999997 7889999
Q ss_pred eccccc--cccccchHHHHHHHHHHHhc-cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEE
Q 001076 1016 SMSSIT--SKWFGEGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1163)
Q Consensus 1016 d~seL~--s~~~Ge~E~~Ir~lF~~A~k-~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlV 1092 (1163)
++..+. ..+.+.....+..++..+.+ ..+.||||||+|.+........... ...++..++ + ..++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~-~~~~l~~~~---~------~~~~~~ 154 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMD-AGNMLKPAL---A------RGELHC 154 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCC-CHHHHHHHH---H------TTSCCE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHH-HHHHHHHhh---c------cCCeEE
Confidence 988765 34455666677888876644 4578999999999864332111111 112222222 1 246788
Q ss_pred EEEeCCCC-----CCCHHHHhccCcEEEecCCCHHHHHHHH
Q 001076 1093 LAATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKII 1128 (1163)
Q Consensus 1093 IaTTN~p~-----~Ld~aLlrRFd~vI~I~~Pd~eeR~eIL 1128 (1163)
|++||.+. .+++++++||. .+.++.|+.++|.+|+
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 88888765 78999999996 7999999999998875
No 50
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.61 E-value=1.3e-15 Score=183.37 Aligned_cols=166 Identities=23% Similarity=0.345 Sum_probs=118.6
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc------
Q 001076 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS------ 1022 (1163)
Q Consensus 949 ddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s------ 1022 (1163)
.+++|++++++.+.+.+...... . ..+...+||+||||||||+||++||..++.++..+++..+..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~------~--~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g 152 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLT------K--SLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHS------S--SCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------
T ss_pred HHhccHHHHHHHHHHHHHHHHhc------c--cCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhh
Confidence 46899999999998776542211 1 124568999999999999999999999999999999876433
Q ss_pred ---ccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCccc-----------CCC
Q 001076 1023 ---KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-----------DKE 1088 (1163)
Q Consensus 1023 ---~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k-----------~~~ 1088 (1163)
.++|...+.+.+.|..+....| ||||||||.+..... ....+.|+..++..... +..
T Consensus 153 ~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~--------~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~ 223 (543)
T 3m6a_A 153 HRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR--------GDPSSAMLEVLDPEQNSSFSDHYIEETFDLS 223 (543)
T ss_dssp -----------CHHHHHHTTCSSSE-EEEEEESSSCC-----------------CCGGGTCTTTTTBCCCSSSCCCCBCS
T ss_pred HHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc--------cCHHHHHHHHHhhhhcceeecccCCeeeccc
Confidence 4567677777888888876665 999999999853321 11334555555532211 115
Q ss_pred CEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHH
Q 001076 1089 RVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL 1132 (1163)
Q Consensus 1089 ~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll 1132 (1163)
+++||+|||.++.++++|++|| .+|.|+.|+.+++.+|++.++
T Consensus 224 ~v~iI~ttN~~~~l~~aL~~R~-~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 224 KVLFIATANNLATIPGPLRDRM-EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp SCEEEEECSSTTTSCHHHHHHE-EEEECCCCCHHHHHHHHHHTH
T ss_pred ceEEEeccCccccCCHHHHhhc-ceeeeCCCCHHHHHHHHHHHH
Confidence 7899999999999999999999 589999999999999999877
No 51
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.59 E-value=1.2e-14 Score=161.38 Aligned_cols=189 Identities=21% Similarity=0.267 Sum_probs=132.6
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1025 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~ 1025 (1163)
.+|++++|.+..++.+...+..... . ..+..++||+||||||||++|+++++.++.+|+.++++.+..
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~-------~--~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--- 76 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKA-------R--KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--- 76 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHH-------H--CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS---
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHc-------c--CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC---
Confidence 4789999999999999888753211 1 123468999999999999999999999999999999876532
Q ss_pred cchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhc-CCcc------cCCCCEEEEEEeCC
Q 001076 1026 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD-GLRT------KDKERVLVLAATNR 1098 (1163)
Q Consensus 1026 Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ld-gl~~------k~~~~VlVIaTTN~ 1098 (1163)
...+...|..+ ...+++|||||||.+. ...+..+..+++.....+- +... ....++++|++||.
T Consensus 77 ---~~~l~~~l~~~-~~~~~~l~lDEi~~l~-----~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~ 147 (324)
T 1hqc_A 77 ---PGDLAAILANS-LEEGDILFIDEIHRLS-----RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTR 147 (324)
T ss_dssp ---HHHHHHHHTTT-CCTTCEEEETTTTSCC-----HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESC
T ss_pred ---hHHHHHHHHHh-ccCCCEEEEECCcccc-----cchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCC
Confidence 22233333321 2457899999999873 1122222222211100000 0000 01135899999999
Q ss_pred CCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCH
Q 001076 1099 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1163)
Q Consensus 1099 p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySg 1155 (1163)
+..+++.+++||+.++.++.|+.+++.++++.++...++. ++..++.|+..+.|+..
T Consensus 148 ~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r 205 (324)
T 1hqc_A 148 PGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMR 205 (324)
T ss_dssp CSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHH
T ss_pred cccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHH
Confidence 9999999999998899999999999999999998765543 55668889999877653
No 52
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.57 E-value=4.7e-15 Score=166.48 Aligned_cols=219 Identities=20% Similarity=0.212 Sum_probs=163.3
Q ss_pred ccccccccccccccchhHHHHHHHhhhhhhcccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001076 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1163)
Q Consensus 447 ~~~~vsf~~FPYylse~Tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgpagsE~Yqe~LaKALA~~f~a~LLilD 526 (1163)
+.-+++|++ +.-.+..|..|..+....+++.++.+.. ....+.|||.||+| .-..+||||+|+..+++++.++
T Consensus 11 ~~~~~~~~d--i~G~~~~~~~l~~~i~~~~~~~~~~~~~---~~~~~~vLl~GppG--tGKT~la~aia~~~~~~~~~v~ 83 (322)
T 3eie_A 11 EKPNVKWED--VAGLEGAKEALKEAVILPVKFPHLFKGN---RKPTSGILLYGPPG--TGKSYLAKAVATEANSTFFSVS 83 (322)
T ss_dssp ECCCCCGGG--SCSCHHHHHHHHHHTHHHHHCGGGCCTT---CCCCCEEEEECSSS--SCHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCCHHH--hcChHHHHHHHHHHHHHHHhCHHHHhcC---CCCCCeEEEECCCC--CcHHHHHHHHHHHHCCCEEEEc
Confidence 345688888 4567889999999888888887765432 23356899999999 5789999999999876655543
Q ss_pred ccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCcccccCCcee
Q 001076 527 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 606 (1163)
Q Consensus 527 s~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk 606 (1163)
...+
T Consensus 84 ~~~l---------------------------------------------------------------------------- 87 (322)
T 3eie_A 84 SSDL---------------------------------------------------------------------------- 87 (322)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred hHHH----------------------------------------------------------------------------
Confidence 2110
Q ss_pred eeccCCCCcccCCCCCCCCCcccCeeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhh
Q 001076 607 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 686 (1163)
Q Consensus 607 ~~g~~~~~~~~~~~~~~p~~g~rg~v~~~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~~~d~s~~~~~~ 686 (1163)
.++|.++.
T Consensus 88 ------------------------------------------------------------------------~~~~~g~~ 95 (322)
T 3eie_A 88 ------------------------------------------------------------------------VSKWMGES 95 (322)
T ss_dssp ------------------------------------------------------------------------HTTTGGGH
T ss_pred ------------------------------------------------------------------------hhcccchH
Confidence 12244556
Q ss_pred HHHHHHHHHHHHhhccCCCeEEEEcchhhhhcCC--------hhhHHHHHHHHhcC---CCCEEEEEeccccccccccCC
Q 001076 687 KLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENL---PSNVVVIGSHTQLDSRKEKSH 755 (1163)
Q Consensus 687 ~~~l~~l~evl~~e~k~~P~IIffddid~~La~~--------~~~~~~i~s~L~~L---~g~VivIgs~~~~d~~~~~~~ 755 (1163)
+..++.+|+.+.. .+|.||||||||.+..++ ..+...+...|..+ .++|+||+++|+++.
T Consensus 96 ~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~------ 166 (322)
T 3eie_A 96 EKLVKQLFAMARE---NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ------ 166 (322)
T ss_dssp HHHHHHHHHHHHH---TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGG------
T ss_pred HHHHHHHHHHHHh---cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhh------
Confidence 6677778877766 899999999999955422 22333344444433 568999999995433
Q ss_pred CCCceeeccCCchhhhccccCCCCccccccccccchHHHHHhhhccccceeecCCchhHHHHHHHHHHHHhhhhhhccch
Q 001076 756 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSN 835 (1163)
Q Consensus 756 ~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~LpdlkgR~~ 835 (1163)
|| ++++|||++.+++++|+...|.+
T Consensus 167 ----------------ld---------------------------------------~al~~Rf~~~i~~~~p~~~~r~~ 191 (322)
T 3eie_A 167 ----------------LD---------------------------------------SAIRRRFERRIYIPLPDLAARTT 191 (322)
T ss_dssp ----------------SC---------------------------------------HHHHHHCCEEEECCCCCHHHHHH
T ss_pred ----------------CC---------------------------------------HHHHcccCeEEEeCCCCHHHHHH
Confidence 22 27888888888899999999999
Q ss_pred hhHHHhhhhcCCCCcccccchhhcccCCchhhhhhHHhHHhhhhhhhcC
Q 001076 836 IISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCS 884 (1163)
Q Consensus 836 Il~IHT~l~~~~L~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al~r~~ 884 (1163)
|+++|.......+.+.+++.|+..+.||+++||+.||..|+..++++..
T Consensus 192 il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~ 240 (322)
T 3eie_A 192 MFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQ 240 (322)
T ss_dssp HHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999866444456888999999999999999999999999999998753
No 53
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.57 E-value=9.8e-15 Score=161.05 Aligned_cols=196 Identities=16% Similarity=0.217 Sum_probs=131.9
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc---
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--- 1023 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~--- 1023 (1163)
+++|++.+++.+...+...... -..-.+|..++||+||||||||++|+++|+.+ +.+++.++|+.+...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~-----~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAG-----LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHT-----CSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcC-----CCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 4679999999998887642110 00112344579999999999999999999998 667999999875432
Q ss_pred --cccchHHH-----HHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCccc-------CCCC
Q 001076 1024 --WFGEGEKY-----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DKER 1089 (1163)
Q Consensus 1024 --~~Ge~E~~-----Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k-------~~~~ 1089 (1163)
++|....+ ...+.......+.+||||||||.+- ..+.+.|+..++..... +-.+
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~------------~~~~~~Ll~~le~~~~~~~~~~~~~~~~ 160 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH------------PDVFNILLQMLDDGRLTDSHGRTVDFRN 160 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC------------HHHHHHHHHHHHHSEEECTTSCEEECTT
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC------------HHHHHHHHHHHhcCEEEcCCCCEEECCC
Confidence 22211110 0122233344456999999999872 12334444444322111 1147
Q ss_pred EEEEEEeCC--------------------------CCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhC-------C
Q 001076 1090 VLVLAATNR--------------------------PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-------E 1136 (1163)
Q Consensus 1090 VlVIaTTN~--------------------------p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~-------~ 1136 (1163)
+++|+|||. ...++++|++||+.++.+.+|+.+++..|++.++.+. .
T Consensus 161 ~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~ 240 (311)
T 4fcw_A 161 TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKR 240 (311)
T ss_dssp EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTT
T ss_pred cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 889999998 4578899999999999999999999999999988652 1
Q ss_pred ---CCChhhHHHHHHHcC--CCCHHHHHhhc
Q 001076 1137 ---LASDVDLEGIANMAD--GYSGSDLKVDY 1162 (1163)
Q Consensus 1137 ---l~~dvdl~~LA~~Te--GySgaDLk~Lv 1162 (1163)
..++..++.|+.... .+...+|+.++
T Consensus 241 ~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i 271 (311)
T 4fcw_A 241 ISLELTEAAKDFLAERGYDPVFGARPLRRVI 271 (311)
T ss_dssp CEEEECHHHHHHHHHHSCBTTTBTTTHHHHH
T ss_pred cEEEeCHHHHHHHHHhCCCccCCchhHHHHH
Confidence 124556777777665 56667776654
No 54
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.57 E-value=1.1e-15 Score=179.25 Aligned_cols=167 Identities=17% Similarity=0.211 Sum_probs=84.5
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc-ccccc-
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGE- 1027 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s-~~~Ge- 1027 (1163)
+|+|++++++.+...+..+++++.++.......+++++||+||||||||++|+++|+.++.+|+.++++.+.. .|.|.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 5789999999999999887776666554333345678999999999999999999999999999999999887 58885
Q ss_pred hHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEE-eCCCCCCCHHH
Q 001076 1028 GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA-TNRPFDLDEAV 1106 (1163)
Q Consensus 1028 ~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaT-TN~p~~Ld~aL 1106 (1163)
.+..++.+|..|.+. +++||++.+... .......+++++|+..||++... ..+ +++ ||+++.|++++
T Consensus 96 ~e~~lr~lf~~a~~~----~~~De~d~~~~~----~~~~~e~rvl~~LL~~~dg~~~~--~~v--~a~~TN~~~~ld~aL 163 (444)
T 1g41_A 96 VDSIIRDLTDSAMKL----VRQQEIAKNRAR----AEDVAEERILDALLPPAKNQWGE--VEN--HDSHSSTRQAFRKKL 163 (444)
T ss_dssp THHHHHHHHHHHHHH----HHHHHHHSCC---------------------------------------------------
T ss_pred HHHHHHHHHHHHHhc----chhhhhhhhhcc----chhhHHHHHHHHHHHHhhccccc--ccc--ccccccCHHHHHHHH
Confidence 789999999998874 458998876422 23345678999999999998543 223 555 99999999999
Q ss_pred Hh--ccCcEEEecCCCHH-HHHHHH
Q 001076 1107 VR--RLPRRLMVNLPDAP-NREKII 1128 (1163)
Q Consensus 1107 lr--RFd~vI~I~~Pd~e-eR~eIL 1128 (1163)
+| |||+.|+|++|+.. .|.+||
T Consensus 164 ~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 164 REGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp -------------------------
T ss_pred HcCCCcceEEEEcCCCCccchhhhh
Confidence 98 99999999999987 677775
No 55
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.57 E-value=3.7e-14 Score=158.19 Aligned_cols=179 Identities=17% Similarity=0.195 Sum_probs=128.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~ 1024 (1163)
..+|++++|++++++.+.+.+.. ...+..+|++||||||||++|+++|++++.+++.+++++..
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~-------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~--- 85 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSK-------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK--- 85 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHT-------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC---
T ss_pred CCCHHHHhCcHHHHHHHHHHHHc-------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC---
Confidence 35789999999999999988752 23345688899999999999999999999999999986632
Q ss_pred ccchHHHHHHHHHHHhcc-----CCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCC
Q 001076 1025 FGEGEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1163)
Q Consensus 1025 ~Ge~E~~Ir~lF~~A~k~-----~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p 1099 (1163)
...++..+...... .+.||||||+|.+.+ ...+ +.|+..++.. ..++.+|+|||.+
T Consensus 86 ----~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----~~~~-------~~L~~~le~~----~~~~~iI~~~n~~ 146 (324)
T 3u61_B 86 ----IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----AESQ-------RHLRSFMEAY----SSNCSIIITANNI 146 (324)
T ss_dssp ----HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----HHHH-------HHHHHHHHHH----GGGCEEEEEESSG
T ss_pred ----HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----HHHH-------HHHHHHHHhC----CCCcEEEEEeCCc
Confidence 23444444332222 568999999998831 1112 2233323221 1457889999999
Q ss_pred CCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHh-------hCCCC-Ch-hhHHHHHHHcCCCCHHHHH
Q 001076 1100 FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA-------KEELA-SD-VDLEGIANMADGYSGSDLK 1159 (1163)
Q Consensus 1100 ~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~-------k~~l~-~d-vdl~~LA~~TeGySgaDLk 1159 (1163)
..+++++++|| .++.|+.|+.++|.+|++.++. ..++. ++ ..++.|+..+.|.-..-+.
T Consensus 147 ~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 147 DGIIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp GGSCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHH
T ss_pred cccCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999 5899999999998776655443 23332 34 6688899998886655443
No 56
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.57 E-value=6.7e-15 Score=167.98 Aligned_cols=229 Identities=20% Similarity=0.236 Sum_probs=154.1
Q ss_pred hHHHHHhcccCCccccccccccccccchhHHHHHHHhhhhhhcccccccccCCCCCCCCceeecCCCCchHHHHHHHHHH
Q 001076 435 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 514 (1163)
Q Consensus 435 ~k~~l~~~i~~~~~~~vsf~~FPYylse~Tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgpagsE~Yqe~LaKAL 514 (1163)
+++.+...| ..+.-.++|+++ +-.+..|..|..+...++++.++.+. .....+.|||.||+| .-..+||||+
T Consensus 33 ~~~~~~~~~-~~~~~~~~~~di--~G~~~~~~~l~~~v~~~~~~~~~~~~---~~~~~~~iLL~GppG--tGKT~la~al 104 (355)
T 2qp9_X 33 LRGALSSAI-LSEKPNVKWEDV--AGLEGAKEALKEAVILPVKFPHLFKG---NRKPTSGILLYGPPG--TGKSYLAKAV 104 (355)
T ss_dssp ---------------CCCGGGS--CCGGGHHHHHHHHTHHHHHCGGGGCS---SCCCCCCEEEECSTT--SCHHHHHHHH
T ss_pred HHHHHhhhh-cccCCCCCHHHh--CCHHHHHHHHHHHHHHHHhCHHHHhc---CCCCCceEEEECCCC--CcHHHHHHHH
Confidence 344444333 345668899995 55678899999988888888776442 223456799999999 5789999999
Q ss_pred HhhcCCeEEEEeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccc
Q 001076 515 AKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASS 594 (1163)
Q Consensus 515 A~~f~a~LLilDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (1163)
|++++++++.++...+.
T Consensus 105 a~~~~~~~~~v~~~~l~--------------------------------------------------------------- 121 (355)
T 2qp9_X 105 ATEANSTFFSVSSSDLV--------------------------------------------------------------- 121 (355)
T ss_dssp HHHHTCEEEEEEHHHHH---------------------------------------------------------------
T ss_pred HHHhCCCEEEeeHHHHh---------------------------------------------------------------
Confidence 99998776665431110
Q ss_pred CCcccccCCceeeeccCCCCcccCCCCCCCCCcccCeeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCccccccc
Q 001076 595 KNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASS 674 (1163)
Q Consensus 595 ~~~~~~~gdrvk~~g~~~~~~~~~~~~~~p~~g~rg~v~~~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~ 674 (1163)
T Consensus 122 -------------------------------------------------------------------------------- 121 (355)
T 2qp9_X 122 -------------------------------------------------------------------------------- 121 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcC----ChhhHHHHHH----HHhcC---CCCEEEEEe
Q 001076 675 LRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG----NNDAYGALKS----KLENL---PSNVVVIGS 743 (1163)
Q Consensus 675 ~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~----~~~~~~~i~s----~L~~L---~g~VivIgs 743 (1163)
++|.++.+..++.+|+.+.. .+|.||||||||.+... +.+....++. .|..+ ..+|+|||+
T Consensus 122 -----~~~~g~~~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~a 193 (355)
T 2qp9_X 122 -----SKWMGESEKLVKQLFAMARE---NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGA 193 (355)
T ss_dssp -----SCC---CHHHHHHHHHHHHH---TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEE
T ss_pred -----hhhcchHHHHHHHHHHHHHH---cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEee
Confidence 11222334456667766654 78999999999995432 2233333333 33333 458999999
Q ss_pred ccccccccccCCCCCceeeccCCchhhhccccCCCCccccccccccchHHHHHhhhccccceeecCCchhHHHHHHHHHH
Q 001076 744 HTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQL 823 (1163)
Q Consensus 744 ~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~ 823 (1163)
+|+++. ||+ +++|||++.+
T Consensus 194 tn~~~~----------------------ld~---------------------------------------al~rRf~~~i 212 (355)
T 2qp9_X 194 TNIPWQ----------------------LDS---------------------------------------AIRRRFERRI 212 (355)
T ss_dssp ESCGGG----------------------SCH---------------------------------------HHHHTCCEEE
T ss_pred cCCccc----------------------CCH---------------------------------------HHHcccCEEE
Confidence 995433 332 7777887788
Q ss_pred HHhhhhhhccchhhHHHhhhhcCCCCcccccchhhcccCCchhhhhhHHhHHhhhhhhhc
Q 001076 824 ERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 883 (1163)
Q Consensus 824 e~~LpdlkgR~~Il~IHT~l~~~~L~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al~r~ 883 (1163)
++++|+...|..|+++|.......+++.+++.|+..+.||+|+||..||..|+..|+.+.
T Consensus 213 ~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~ 272 (355)
T 2qp9_X 213 YIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 272 (355)
T ss_dssp ECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888886533334578899999999999999999999999999999764
No 57
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.55 E-value=2.3e-13 Score=140.12 Aligned_cols=174 Identities=21% Similarity=0.253 Sum_probs=125.9
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccc
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSI 1020 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL-----g~pfi~Id~seL 1020 (1163)
..|++++|.++.++.+.+.+.. . ...++||+||+|+|||++|+++++.+ ...++.+++...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~----------~----~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVER----------K----NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHT----------T----CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT
T ss_pred CCHHHHcCcHHHHHHHHHHHhC----------C----CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc
Confidence 5688999999999999888752 1 12359999999999999999999986 456888887653
Q ss_pred ccccccchHHHHHHHHHHHh------ccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEE
Q 001076 1021 TSKWFGEGEKYVKAVFSLAS------KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1094 (1163)
Q Consensus 1021 ~s~~~Ge~E~~Ir~lF~~A~------k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIa 1094 (1163)
... ..+...+.... ...+.||||||+|.+.. . ..+.++..++.. ..++.+|+
T Consensus 80 ~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----~-------~~~~l~~~l~~~----~~~~~~i~ 137 (226)
T 2chg_A 80 RGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----D-------AQAALRRTMEMY----SKSCRFIL 137 (226)
T ss_dssp TCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH-----H-------HHHHHHHHHHHT----TTTEEEEE
T ss_pred cCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCH-----H-------HHHHHHHHHHhc----CCCCeEEE
Confidence 321 12222222221 24678999999998731 1 122333333321 25688899
Q ss_pred EeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCHH
Q 001076 1095 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 1156 (1163)
Q Consensus 1095 TTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySga 1156 (1163)
+||.+..+++.+.+||. .+.+++|+.+++.++++.++...+.. ++..+..|+..+.|.-..
T Consensus 138 ~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~ 199 (226)
T 2chg_A 138 SCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRK 199 (226)
T ss_dssp EESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHH
T ss_pred EeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 99999999999999996 89999999999999999988765543 556678888888775543
No 58
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.55 E-value=3.2e-13 Score=140.26 Aligned_cols=179 Identities=24% Similarity=0.275 Sum_probs=128.1
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 1011 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p-------------- 1011 (1163)
..|++++|.+..++.+.+.+.. ...+..+||+||+|+|||+||+++++.++..
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSL-------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHH-------------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 4678999999999999887752 1223579999999999999999999988432
Q ss_pred ----------EEEEeccccccccccchHHHHHHHHHHHh----ccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHH
Q 001076 1012 ----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1077 (1163)
Q Consensus 1012 ----------fi~Id~seL~s~~~Ge~E~~Ir~lF~~A~----k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~ 1077 (1163)
++.++... ......+..++..+. ...+.||||||+|.+. ....+.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~------------~~~~~~l~~ 148 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALLK 148 (250)
T ss_dssp HHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC------------HHHHHHHHH
T ss_pred HHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc------------HHHHHHHHH
Confidence 22222111 112234555555443 2357899999999872 123344454
Q ss_pred HhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCHH
Q 001076 1078 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 1156 (1163)
Q Consensus 1078 ~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySga 1156 (1163)
.++.. ..++.+|++||.+..+.+.+++|+ ..+.+++|+.++..++++.++.+.+.. ++..++.|++.+.| .+.
T Consensus 149 ~l~~~----~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~ 222 (250)
T 1njg_A 149 TLEEP----PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLR 222 (250)
T ss_dssp HHHSC----CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHH
T ss_pred HHhcC----CCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHH
Confidence 44432 357899999999989999999997 789999999999999999998775543 55668899999988 455
Q ss_pred HHHhh
Q 001076 1157 DLKVD 1161 (1163)
Q Consensus 1157 DLk~L 1161 (1163)
++..+
T Consensus 223 ~~~~~ 227 (250)
T 1njg_A 223 DALSL 227 (250)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 59
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.53 E-value=1.3e-13 Score=154.20 Aligned_cols=188 Identities=20% Similarity=0.240 Sum_probs=125.5
Q ss_pred CCCccccc-C--cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001076 945 GVTFDDIG-A--LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1163)
Q Consensus 945 ~~tfddI~-G--leevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~s 1018 (1163)
..+|++++ | .......+...+..+ .....++||+||||||||+||+++++.+ +.+++.+++.
T Consensus 7 ~~~f~~fv~g~~~~~a~~~~~~~~~~~------------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 7 KYTLENFIVGEGNRLAYEVVKEALENL------------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TCCSSSCCCCTTTHHHHHHHHHHHHTT------------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCcccCCCCCcHHHHHHHHHHHHhCc------------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 45788886 4 344455555544321 1123679999999999999999999999 8999999998
Q ss_pred ccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCC
Q 001076 1019 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1098 (1163)
Q Consensus 1019 eL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~ 1098 (1163)
++...+.+.........|..... .+.|||||||+.+.+.+ ..++.+..+++.+. .....+||++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~---~~~~~l~~~l~~~~---------~~~~~iii~~~~~ 141 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE---RTQIEFFHIFNTLY---------LLEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH---HHHHHHHHHHHHHH---------HTTCEEEEEESSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh---HHHHHHHHHHHHHH---------HCCCeEEEEecCC
Confidence 87655444332222233433333 47899999999884211 12233333333222 1134566666666
Q ss_pred CC---CCCHHHHhccC--cEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCHHHHHh
Q 001076 1099 PF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKV 1160 (1163)
Q Consensus 1099 p~---~Ld~aLlrRFd--~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySgaDLk~ 1160 (1163)
+. .+++.+++||. .++.+++ +.++|.+|++.++...++. ++..++.|+..+ |. ..+|..
T Consensus 142 ~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~-~r~l~~ 206 (324)
T 1l8q_A 142 PQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KN-VREIEG 206 (324)
T ss_dssp GGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SS-HHHHHH
T ss_pred hHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CC-HHHHHH
Confidence 65 68899999985 6788998 9999999999999865543 556688899888 54 444433
No 60
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.53 E-value=1.6e-14 Score=145.63 Aligned_cols=150 Identities=21% Similarity=0.384 Sum_probs=108.5
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL----------g~pfi~I 1015 (1163)
..|++++|.+...+.+.+.+.. ....++||+||||||||++|+++++.+ +.+++.+
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSR--------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred cccchhhcchHHHHHHHHHHhC--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 3577899999988888877632 123689999999999999999999997 7889999
Q ss_pred ecccccc--ccccchHHHHHHHHHHHhcc-CCeEEEEccccccccCCC-CcchHHHHHHHHHHHHHHhcCCcccCCCCEE
Q 001076 1016 SMSSITS--KWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRE-NPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 1091 (1163)
Q Consensus 1016 d~seL~s--~~~Ge~E~~Ir~lF~~A~k~-~PsILfIDEID~L~g~r~-s~~~~eal~~il~~LL~~Ldgl~~k~~~~Vl 1091 (1163)
++..+.. .+.+..+..+..++..+... .+.||||||+|.+.+.+. ...... +.+.+...++ ..+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~----~~~~l~~~~~------~~~~~ 154 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALD----AGNILKPMLA------RGELR 154 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCC----THHHHHHHHH------TTCSC
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchH----HHHHHHHHHh------cCCee
Confidence 8877652 34455566777888777665 678999999999964432 111111 1122222222 24678
Q ss_pred EEEEeCCCC-----CCCHHHHhccCcEEEecCCC
Q 001076 1092 VLAATNRPF-----DLDEAVVRRLPRRLMVNLPD 1120 (1163)
Q Consensus 1092 VIaTTN~p~-----~Ld~aLlrRFd~vI~I~~Pd 1120 (1163)
+|+++|.+. .+++++++||. .+.++.|+
T Consensus 155 ii~~~~~~~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 155 CIGATTVSEYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp EEEEECHHHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred EEEecCHHHHHHHHhccHHHHHhcC-cccCCCCC
Confidence 899998764 68999999996 58888885
No 61
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.53 E-value=2.4e-14 Score=157.95 Aligned_cols=167 Identities=14% Similarity=0.160 Sum_probs=116.1
Q ss_pred cchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcCC--------hhhHHHHHHHHhcC--CCCEEEEEecccccccc
Q 001076 682 GDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENL--PSNVVVIGSHTQLDSRK 751 (1163)
Q Consensus 682 ~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~~--------~~~~~~i~s~L~~L--~g~VivIgs~~~~d~~~ 751 (1163)
|.++.+..+..+|+.+.. ..|.|+|+||||.+...+ .++.+.+...|... ...+|+++++|+++.
T Consensus 84 ~~~~~~~~i~~vf~~a~~---~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~-- 158 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKN---SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDI-- 158 (274)
T ss_dssp TTHHHHHHHHHHHHHHHH---TCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGG--
T ss_pred hhhHHHHHHHHHHHHHHh---cCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhh--
Confidence 445556667777776544 789999999999854321 12223333333322 226888899986544
Q ss_pred ccCCCCCceeeccCCchhhhccccCCCCccccccccccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhh
Q 001076 752 EKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVET 829 (1163)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd 829 (1163)
|| +|++| ||++.+++++|+
T Consensus 159 --------------------LD---------------------------------------~al~r~gRfd~~i~~~~P~ 179 (274)
T 2x8a_A 159 --------------------ID---------------------------------------PAILRPGRLDKTLFVGLPP 179 (274)
T ss_dssp --------------------SC---------------------------------------HHHHSTTSSCEEEECCSCC
T ss_pred --------------------CC---------------------------------------HhhcCcccCCeEEEeCCcC
Confidence 33 38888 999999999999
Q ss_pred hhccchhhHHHhhh-hcCCC-Ccccccchhhccc--CCchhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHH
Q 001076 830 LKGQSNIISIRSVL-SRNGL-DCVDLESLCIKDQ--TLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLN 905 (1163)
Q Consensus 830 lkgR~~Il~IHT~l-~~~~L-~~vdLeeLa~~tk--g~sgadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~ 905 (1163)
...|.+|+++|+.. ....+ .+++++.+|..+. ||+|+||+.||++|+..|+++...... .......+.+...
T Consensus 180 ~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~----~~~~~~~~~i~~~ 255 (274)
T 2x8a_A 180 PADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQK----SGNEKGELKVSHK 255 (274)
T ss_dssp HHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC---------------CCBCHH
T ss_pred HHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhcc----ccccccCCeecHH
Confidence 99999999999763 23334 7889999998765 999999999999999999987543211 1112234567889
Q ss_pred HHHhhhhhhhh
Q 001076 906 ILQGIQSESKS 916 (1163)
Q Consensus 906 dF~~al~eikp 916 (1163)
||+.++.+++|
T Consensus 256 df~~al~~~~p 266 (274)
T 2x8a_A 256 HFEEAFKKVRS 266 (274)
T ss_dssp HHHHHHTTCCC
T ss_pred HHHHHHHHhcC
Confidence 99999888766
No 62
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.53 E-value=2.1e-14 Score=169.71 Aligned_cols=170 Identities=20% Similarity=0.327 Sum_probs=125.3
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL----------g~pfi~I 1015 (1163)
..|++++|.++.++.+.+.+.. ....++||+||||||||++|+++|+.+ +.+|+.+
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r--------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSR--------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC--------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CCCCCccCcHHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 4678999999999998887742 123589999999999999999999997 7889999
Q ss_pred eccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEE
Q 001076 1016 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1095 (1163)
Q Consensus 1016 d~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaT 1095 (1163)
++. ..+.|..+..++.+|..+....+.||||| . . . ...+.|+..+ ....+.+|++
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD--~-------~---~----~a~~~L~~~L------~~g~v~vI~a 297 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID--A-------A---I----DASNILKPSL------ARGELQCIGA 297 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C----------------------CCCT------TSSSCEEEEE
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe--C-------c---h----hHHHHHHHhh------cCCCEEEEec
Confidence 987 56778888889999999999889999999 0 1 0 1222232222 2357899999
Q ss_pred eCCCC-----CCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhh----CCC-CChhhHHHHHHHcCCCCH
Q 001076 1096 TNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK----EEL-ASDVDLEGIANMADGYSG 1155 (1163)
Q Consensus 1096 TN~p~-----~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k----~~l-~~dvdl~~LA~~TeGySg 1155 (1163)
||... .+++++++||. +|.|+.|+.+++..|++.++.+ .++ ..+..+..++..+.+|.+
T Consensus 298 t~~~e~~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~ 366 (468)
T 3pxg_A 298 TTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYIS 366 (468)
T ss_dssp CCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhc
Confidence 99886 68999999995 6999999999999999998866 222 256678888888877754
No 63
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.52 E-value=1.3e-14 Score=170.39 Aligned_cols=229 Identities=20% Similarity=0.236 Sum_probs=154.8
Q ss_pred hHHHHHhcccCCccccccccccccccchhHHHHHHHhhhhhhcccccccccCCCCCCCCceeecCCCCchHHHHHHHHHH
Q 001076 435 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 514 (1163)
Q Consensus 435 ~k~~l~~~i~~~~~~~vsf~~FPYylse~Tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgpagsE~Yqe~LaKAL 514 (1163)
+.+.+.+.|+ .+.-.++|+++ .-.+..|..|..+.-..+++.++..- .....+.|||.||+| .-..+|||||
T Consensus 116 ~~~~~~~~i~-~~~~~~~~~di--~G~~~~k~~l~~~v~~p~~~~~~~~~---~~~~~~~vLL~GppG--tGKT~lA~ai 187 (444)
T 2zan_A 116 LQNQLQGAIV-IERPNVKWSDV--AGLEGAKEALKEAVILPIKFPHLFTG---KRTPWRGILLFGPPG--TGKSYLAKAV 187 (444)
T ss_dssp --------CB-CCCCCCCGGGS--CSCHHHHHHHHHHHTHHHHCTTTTSG---GGCCCSEEEEECSTT--SSHHHHHHHH
T ss_pred HHHHhhccee-ccCCCCCHHHh--cCHHHHHHHHHHHHHHHhhCHHHhhc---cCCCCceEEEECCCC--CCHHHHHHHH
Confidence 3444444444 45668899995 45678899999888778888765431 123347899999999 5789999999
Q ss_pred Hhhc-CCeEEEEeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccc
Q 001076 515 AKHF-SARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTAS 593 (1163)
Q Consensus 515 A~~f-~a~LLilDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (1163)
|+.+ +++++.++...+.
T Consensus 188 a~~~~~~~~~~v~~~~l~-------------------------------------------------------------- 205 (444)
T 2zan_A 188 ATEANNSTFFSISSSDLV-------------------------------------------------------------- 205 (444)
T ss_dssp HHHCCSSEEEEECCC-----------------------------------------------------------------
T ss_pred HHHcCCCCEEEEeHHHHH--------------------------------------------------------------
Confidence 9998 5555444432111
Q ss_pred cCCcccccCCceeeeccCCCCcccCCCCCCCCCcccCeeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccc
Q 001076 594 SKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTAS 673 (1163)
Q Consensus 594 ~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~p~~g~rg~v~~~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~ 673 (1163)
T Consensus 206 -------------------------------------------------------------------------------- 205 (444)
T 2zan_A 206 -------------------------------------------------------------------------------- 205 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcC----ChhhHHHHHHHHhcC-------CCCEEEEE
Q 001076 674 SLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG----NNDAYGALKSKLENL-------PSNVVVIG 742 (1163)
Q Consensus 674 ~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~----~~~~~~~i~s~L~~L-------~g~VivIg 742 (1163)
++|.++.+..++.+|+.+.. .+|.||||||||.+... +.+....++..|+.. .++|+|||
T Consensus 206 ------~~~~g~~~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~ 276 (444)
T 2zan_A 206 ------SKWLGESEKLVKNLFQLARE---NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLG 276 (444)
T ss_dssp ------------CCCTHHHHHHHHHH---SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEE
T ss_pred ------hhhcchHHHHHHHHHHHHHH---cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEe
Confidence 11111222234556665544 78999999999995442 233444555555443 35799999
Q ss_pred eccccccccccCCCCCceeeccCCchhhhccccCCCCccccccccccchHHHHHhhhccccceeecCCchhHHHHHHHHH
Q 001076 743 SHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQ 822 (1163)
Q Consensus 743 s~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq 822 (1163)
++|+++. ||| +++|||++.
T Consensus 277 atn~~~~----------------------ld~---------------------------------------al~rRf~~~ 295 (444)
T 2zan_A 277 ATNIPWV----------------------LDS---------------------------------------AIRRRFEKR 295 (444)
T ss_dssp EESCGGG----------------------SCH---------------------------------------HHHTTCCEE
T ss_pred cCCCccc----------------------cCH---------------------------------------HHHhhcceE
Confidence 9995432 222 777788777
Q ss_pred HHHhhhhhhccchhhHHHhhhhcCCCCcccccchhhcccCCchhhhhhHHhHHhhhhhhhc
Q 001076 823 LERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 883 (1163)
Q Consensus 823 ~e~~LpdlkgR~~Il~IHT~l~~~~L~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al~r~ 883 (1163)
+++++|+...|..|+++|.......+.+.+++.|+..+.||+|+||+.||..|+..++++.
T Consensus 296 i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~ 356 (444)
T 2zan_A 296 IYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKV 356 (444)
T ss_dssp EECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHH
T ss_pred EEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888886533334578899999999999999999999999999998764
No 64
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.52 E-value=3.6e-14 Score=176.48 Aligned_cols=185 Identities=21% Similarity=0.337 Sum_probs=138.3
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL----------g~pfi~I 1015 (1163)
..|++++|.++.++.+.+.+.. ....++||+||||||||++|+++|+.+ +..++.+
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~--------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred CCCCCccCCHHHHHHHHHHHhc--------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 3678999999999988887642 134689999999999999999999987 6678888
Q ss_pred eccccc--cccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEE
Q 001076 1016 SMSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1093 (1163)
Q Consensus 1016 d~seL~--s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVI 1093 (1163)
++..+. ..+.|..+..++.+|..+....++||||||+|.|++......... .+.+.|. .+. ....+.+|
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~---~~~~~L~----~~l--~~~~~~~I 319 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQV---DAANLIK----PLL--SSGKIRVI 319 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHH---HHHHHHS----SCS--SSCCCEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchH---HHHHHHH----HHH--hCCCeEEE
Confidence 888776 457788899999999999988899999999999986654322111 1222222 221 23568889
Q ss_pred EEeCCC-----CCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhh----CCC-CChhhHHHHHHHcCCCC
Q 001076 1094 AATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK----EEL-ASDVDLEGIANMADGYS 1154 (1163)
Q Consensus 1094 aTTN~p-----~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k----~~l-~~dvdl~~LA~~TeGyS 1154 (1163)
++||.+ ..+++++.+||. .+.|+.|+.++|.+|++.+... ..+ ..+..+..++..+.||.
T Consensus 320 ~at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i 389 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYI 389 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHC
T ss_pred EEeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhc
Confidence 999863 467899999996 7999999999999999988765 222 34556777777777653
No 65
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.51 E-value=1.2e-13 Score=162.59 Aligned_cols=173 Identities=24% Similarity=0.406 Sum_probs=126.3
Q ss_pred CCcccccCcHHHH---HHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccccc
Q 001076 946 VTFDDIGALENVK---DTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1163)
Q Consensus 946 ~tfddI~Gleevk---~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s 1022 (1163)
.+|++++|++.++ ..|...+.. +. . .++||+||||||||+||++|++.++.+|+.+++...
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~----------~~---~-~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-- 86 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEA----------GH---L-HSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-- 86 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHH----------TC---C-CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC--
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHc----------CC---C-cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC--
Confidence 5789999999998 677776642 21 1 589999999999999999999999999999986442
Q ss_pred ccccchHHHHHHHHHHHhc----cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEe--
Q 001076 1023 KWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-- 1096 (1163)
Q Consensus 1023 ~~~Ge~E~~Ir~lF~~A~k----~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTT-- 1096 (1163)
....++.+|..+.. ..+.||||||||.+... ..+.|+..++. ..+++|++|
T Consensus 87 -----~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~------------~q~~LL~~le~------~~v~lI~att~ 143 (447)
T 3pvs_A 87 -----GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS------------QQDAFLPHIED------GTITFIGATTE 143 (447)
T ss_dssp -----CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------CCHHHHHT------TSCEEEEEESS
T ss_pred -----CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH------------HHHHHHHHHhc------CceEEEecCCC
Confidence 23345666665543 36799999999988311 12234444432 346777666
Q ss_pred CCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhh-------CCC-CChhhHHHHHHHcCCCCHHHH
Q 001076 1097 NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-------EEL-ASDVDLEGIANMADGYSGSDL 1158 (1163)
Q Consensus 1097 N~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k-------~~l-~~dvdl~~LA~~TeGySgaDL 1158 (1163)
|....+++++++|+ .++.+..|+.+++..+++.++.+ ..+ .++..++.|+..+.|....-+
T Consensus 144 n~~~~l~~aL~sR~-~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 144 NPSFELNSALLSRA-RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp CGGGSSCHHHHTTE-EEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred CcccccCHHHhCce-eEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 55568999999999 48889999999999999999876 222 355678888888877655433
No 66
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.51 E-value=1.6e-13 Score=156.82 Aligned_cols=212 Identities=20% Similarity=0.285 Sum_probs=129.7
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhh----------------cCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFC----------------KGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI 1013 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~----------------k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi 1013 (1163)
.|+|++++++.|...+...+.+..... ..+...+..++||+||||||||++|+++|+.++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 467999999999988754333222100 0112345568999999999999999999999999999
Q ss_pred EEeccccc-cccccch-HHHHHHHHHHHh----ccCCeEEEEccccccccCCCCcch--HHHHHHHHHHHHHHhcCCc--
Q 001076 1014 NISMSSIT-SKWFGEG-EKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGE--HEAMRKMKNEFMVNWDGLR-- 1083 (1163)
Q Consensus 1014 ~Id~seL~-s~~~Ge~-E~~Ir~lF~~A~----k~~PsILfIDEID~L~g~r~s~~~--~eal~~il~~LL~~Ldgl~-- 1083 (1163)
.+++..+. ..++|.. +..+..+|..+. ...++||||||||.+...+..... ......+.+.|+..+++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3455543 445666665432 336799999999998654322110 0000124556666665431
Q ss_pred --c-------------cCCCCEEEEEEeCC-----------------------------------------CCCCCHHHH
Q 001076 1084 --T-------------KDKERVLVLAATNR-----------------------------------------PFDLDEAVV 1107 (1163)
Q Consensus 1084 --~-------------k~~~~VlVIaTTN~-----------------------------------------p~~Ld~aLl 1107 (1163)
. -...++++|+|+|. ...+.++|+
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 0 01145678888762 123678999
Q ss_pred hccCcEEEecCCCHHHHHHHHHH----HHhh-------C--CC-CChhhHHHHHHHcC--CCCHHHHHhh
Q 001076 1108 RRLPRRLMVNLPDAPNREKIIRV----ILAK-------E--EL-ASDVDLEGIANMAD--GYSGSDLKVD 1161 (1163)
Q Consensus 1108 rRFd~vI~I~~Pd~eeR~eILk~----ll~k-------~--~l-~~dvdl~~LA~~Te--GySgaDLk~L 1161 (1163)
+||+.++.|++++.++..+|+.. ++.+ . .+ .++..+..|+.... .....+|+.+
T Consensus 262 ~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~ 331 (376)
T 1um8_A 262 GRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAI 331 (376)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHH
T ss_pred cCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHH
Confidence 99999999999999999998862 2221 1 11 24555677777643 2444555543
No 67
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.50 E-value=3.8e-14 Score=178.92 Aligned_cols=183 Identities=22% Similarity=0.365 Sum_probs=124.5
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL----------g~pfi~I 1015 (1163)
..|++++|.++.++.+.+.+.. ....++||+||||||||++|+++|+.+ +.+++.+
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~--------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHC--------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred CCCcccCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 4678899999998888887642 123579999999999999999999998 8899999
Q ss_pred eccccc--cccccchHHHHHHHHHHHhcc-CCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEE
Q 001076 1016 SMSSIT--SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1163)
Q Consensus 1016 d~seL~--s~~~Ge~E~~Ir~lF~~A~k~-~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlV 1092 (1163)
+++.+. ..+.|+.+..++.+|..+... .+.||||||||.|.+.....+.... .+.+...+. ...+.+
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~----~~~L~~~l~------~~~i~~ 302 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDA----GNMLKPALA------RGELRL 302 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-----------------------HHHHH------TTCCCE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHH----HHHHHHHHh------CCCeEE
Confidence 998886 467788889999999999875 6899999999999755433222222 222322232 246788
Q ss_pred EEEeCCCC----CCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhC----CC-CChhhHHHHHHHcCCC
Q 001076 1093 LAATNRPF----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE----EL-ASDVDLEGIANMADGY 1153 (1163)
Q Consensus 1093 IaTTN~p~----~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~----~l-~~dvdl~~LA~~TeGy 1153 (1163)
|++||.+. .+++++.+||+. +.|+.|+.+++.+|++.++... .+ ..+..+..++..+.||
T Consensus 303 I~at~~~~~~~~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~ 371 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRY 371 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCSCCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHH
T ss_pred EEecCchHHhhhccCHHHHhCCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhh
Confidence 89888763 578999999975 9999999999999999887642 22 2455677777777654
No 68
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=8.4e-14 Score=166.40 Aligned_cols=199 Identities=18% Similarity=0.209 Sum_probs=128.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccC-ChhhhhcCCCC--CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQ-RPELFCKGQLT--KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~-~pelf~k~~l~--~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~ 1021 (1163)
..+|++++|++..++.+.+++..... .+..|.+.+.. .+++++||+||||||||++|+++|++++++++.++++++.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~ 114 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVR 114 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 35799999999999999998865321 12223322221 2457899999999999999999999999999999998865
Q ss_pred cccccchH-------HHHHHHHHHH-----hccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCC
Q 001076 1022 SKWFGEGE-------KYVKAVFSLA-----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1089 (1163)
Q Consensus 1022 s~~~Ge~E-------~~Ir~lF~~A-----~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~ 1089 (1163)
........ ..+..+|..+ ....+.||||||||.|..... .. ++.|+..++. .+.+
T Consensus 115 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~-----~~----l~~L~~~l~~----~~~~ 181 (516)
T 1sxj_A 115 SKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR-----GG----VGQLAQFCRK----TSTP 181 (516)
T ss_dssp CHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST-----TH----HHHHHHHHHH----CSSC
T ss_pred hHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH-----HH----HHHHHHHHHh----cCCC
Confidence 43211100 0022233333 234679999999999864321 11 2223322222 1244
Q ss_pred EEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCC-CChhhHHHHHHHcCCCCHHHH
Q 001076 1090 VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSGSDL 1158 (1163)
Q Consensus 1090 VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l-~~dvdl~~LA~~TeGySgaDL 1158 (1163)
+++|+++.....+. .+. |+...+.|+.|+.+++.+++..++.+.++ .++..+..|++.+.|--..-+
T Consensus 182 iIli~~~~~~~~l~-~l~-~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i 249 (516)
T 1sxj_A 182 LILICNERNLPKMR-PFD-RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVI 249 (516)
T ss_dssp EEEEESCTTSSTTG-GGT-TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHH
T ss_pred EEEEEcCCCCccch-hhH-hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHH
Confidence 55555444334444 344 44478999999999999999988876543 244558899999887544333
No 69
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.49 E-value=3.8e-13 Score=151.48 Aligned_cols=189 Identities=20% Similarity=0.187 Sum_probs=130.8
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecc
Q 001076 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMS 1018 (1163)
Q Consensus 948 fddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---------g~pfi~Id~s 1018 (1163)
+++++|.++.++.+...+...+. ...+.+++|+||||||||++|+++++.+ +.+++.+++.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~----------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR----------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS----------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 36789999999999887743221 1234689999999999999999999988 8899999987
Q ss_pred ccccc----------------cccc-hHHHHHHHHHHHhcc-CCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhc
Q 001076 1019 SITSK----------------WFGE-GEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1080 (1163)
Q Consensus 1019 eL~s~----------------~~Ge-~E~~Ir~lF~~A~k~-~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ld 1080 (1163)
..... ..+. ....+..++...... .+.||||||+|.+...+ . ...++..++..+.
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---~----~~~~l~~l~~~~~ 160 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---G----GQDLLYRITRINQ 160 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---T----HHHHHHHHHHGGG
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---C----CChHHHhHhhchh
Confidence 53211 1121 223344555554433 47899999999884221 0 1234444554443
Q ss_pred CCcccCCCCEEEEEEeCCC---CCCCHHHHhccCc-EEEecCCCHHHHHHHHHHHHhh--C-CCCChhhHHHHHHHcC--
Q 001076 1081 GLRTKDKERVLVLAATNRP---FDLDEAVVRRLPR-RLMVNLPDAPNREKIIRVILAK--E-ELASDVDLEGIANMAD-- 1151 (1163)
Q Consensus 1081 gl~~k~~~~VlVIaTTN~p---~~Ld~aLlrRFd~-vI~I~~Pd~eeR~eILk~ll~k--~-~l~~dvdl~~LA~~Te-- 1151 (1163)
.... +.++.+|++||.+ ..+++.+.+||.. .+.+++|+.+++.+|++..+.. . ...++..++.++..+.
T Consensus 161 ~~~~--~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (387)
T 2v1u_A 161 ELGD--RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAARE 238 (387)
T ss_dssp CC-------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSS
T ss_pred hcCC--CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHh
Confidence 3210 3578999999887 7889999999976 8999999999999999998865 1 2234455788888887
Q ss_pred -CCCH
Q 001076 1152 -GYSG 1155 (1163)
Q Consensus 1152 -GySg 1155 (1163)
|...
T Consensus 239 ~G~~r 243 (387)
T 2v1u_A 239 HGDAR 243 (387)
T ss_dssp SCCHH
T ss_pred ccCHH
Confidence 7654
No 70
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.49 E-value=2.7e-13 Score=159.18 Aligned_cols=190 Identities=17% Similarity=0.262 Sum_probs=125.1
Q ss_pred CCCccccc-Cc--HHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe
Q 001076 945 GVTFDDIG-AL--ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINIS 1016 (1163)
Q Consensus 945 ~~tfddI~-Gl--eevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL-----g~pfi~Id 1016 (1163)
..+|++++ |. ......+..+... .+ . ..+++|+||||+|||+||++|++++ +.+++.++
T Consensus 101 ~~tfd~fv~g~~n~~a~~~~~~~a~~----------~~--~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 101 DYTFENFVVGPGNSFAYHAALEVAKH----------PG--R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp TCSGGGCCCCTTTHHHHHHHHHHHHS----------TT--S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCChhhcCCCCchHHHHHHHHHHHhC----------CC--C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 45788877 53 3334444443321 11 1 4689999999999999999999998 88999999
Q ss_pred ccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEe
Q 001076 1017 MSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1096 (1163)
Q Consensus 1017 ~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTT 1096 (1163)
+..+...+.+.........|.......+.|||||||+.+.+.+ ..++.+..+++.+. .....+||+|.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~---~~q~~l~~~l~~l~---------~~~~~iIitt~ 235 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT---GVQTELFHTFNELH---------DSGKQIVICSD 235 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH---HHHHHHHHHHHHHH---------TTTCEEEEEES
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh---HHHHHHHHHHHHHH---------HCCCeEEEEEC
Confidence 8886544433222211223444444478999999999885321 12233333333322 12345556555
Q ss_pred CCCCC---CCHHHHhccC--cEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCHHHHHh
Q 001076 1097 NRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKV 1160 (1163)
Q Consensus 1097 N~p~~---Ld~aLlrRFd--~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySgaDLk~ 1160 (1163)
+.+.. +++.+++||. .++.++.|+.++|..|++..+...++. ++..+..|+..+.| ...++..
T Consensus 236 ~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~ 304 (440)
T 2z4s_A 236 REPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRG 304 (440)
T ss_dssp SCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHH
Confidence 55554 8899999985 789999999999999999998765432 44558889988876 4555544
No 71
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=6.5e-13 Score=150.35 Aligned_cols=177 Identities=18% Similarity=0.225 Sum_probs=126.3
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----------CCcEEEEec
Q 001076 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----------GANFINISM 1017 (1163)
Q Consensus 949 ddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL-----------g~pfi~Id~ 1017 (1163)
++++|.++.++.+...+...+. ...+..++|+||||||||+||+++++++ +.+++.++|
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~----------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK----------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT----------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCChHHHHHHHHHHHHHHHc----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 5789999999999888754322 1234689999999999999999999988 899999997
Q ss_pred cccc-c----------cc-------ccc-hHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHH
Q 001076 1018 SSIT-S----------KW-------FGE-GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1078 (1163)
Q Consensus 1018 seL~-s----------~~-------~Ge-~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~ 1078 (1163)
.... . .. .+. ....+..++..+....+ ||||||+|.+..... .+. ++..++..
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~----~~~---~l~~l~~~ 161 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRG----GDI---VLYQLLRS 161 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTT----SHH---HHHHHHTS
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCC----Cce---eHHHHhcC
Confidence 6543 1 00 111 12334555555544444 999999998853221 111 02223211
Q ss_pred hcCCcccCCCCEEEEEEeCCC---CCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhh---CCCCChhhHHHHHHHcC
Q 001076 1079 WDGLRTKDKERVLVLAATNRP---FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK---EELASDVDLEGIANMAD 1151 (1163)
Q Consensus 1079 Ldgl~~k~~~~VlVIaTTN~p---~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k---~~l~~dvdl~~LA~~Te 1151 (1163)
. .++.||+|||.+ ..+++.+++||..++.|++|+.+++.+|++..+.. ....++..++.+++.+.
T Consensus 162 ~--------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~ 232 (384)
T 2qby_B 162 D--------ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISA 232 (384)
T ss_dssp S--------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHH
T ss_pred C--------cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHH
Confidence 1 568999999887 67899999999889999999999999999998864 12234556788888887
No 72
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.47 E-value=8.4e-14 Score=173.46 Aligned_cols=168 Identities=20% Similarity=0.328 Sum_probs=123.3
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL----------g~pfi~I 1015 (1163)
..|++++|.++.++.+.+.+.. ....++||+||||||||++|+++|+.+ +.+++.+
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~--------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSR--------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC--------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CCCCCccCchHHHHHHHHHHhC--------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 4678999999999999887742 123579999999999999999999997 7888888
Q ss_pred eccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEE
Q 001076 1016 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1095 (1163)
Q Consensus 1016 d~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaT 1095 (1163)
++ ...+.|+.+..++.+|..+....++||||| . . ....+.|+..+ ....+.+|++
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~-------~-------~~~~~~L~~~l------~~~~v~~I~a 297 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID--A-------A-------IDASNILKPSL------ARGELQCIGA 297 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C----------------------CCCT------TSSSCEEEEE
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc--C-------c-------hhHHHHHHHHH------hcCCEEEEeC
Confidence 87 456788888999999999999999999999 1 0 01222222222 2357999999
Q ss_pred eCCCC-----CCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhC----CC-CChhhHHHHHHHcCCC
Q 001076 1096 TNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE----EL-ASDVDLEGIANMADGY 1153 (1163)
Q Consensus 1096 TN~p~-----~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~----~l-~~dvdl~~LA~~TeGy 1153 (1163)
||... .+++++++|| ..|.|+.|+.+++.+||+.+.... .+ ..+..+..++..+.+|
T Consensus 298 t~~~~~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~ 364 (758)
T 3pxi_A 298 TTLDEYRKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRY 364 (758)
T ss_dssp CCTTTTHHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHS
T ss_pred CChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc
Confidence 99887 7999999999 679999999999999999887662 22 2556677777776654
No 73
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.47 E-value=1.7e-13 Score=153.44 Aligned_cols=160 Identities=21% Similarity=0.211 Sum_probs=107.5
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc------ccc
Q 001076 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ITS 1022 (1163)
Q Consensus 949 ddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~se------L~s 1022 (1163)
.+++|++++++.+...+.. ..++||+||||||||+||+++|+.++.+++.+++.. +.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~----------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICT----------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHH----------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred cceeCcHHHHHHHHHHHHc----------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 4678999999888776631 147999999999999999999999999999988732 221
Q ss_pred ccccchHHHHHHHHHHHhccC---CeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCC
Q 001076 1023 KWFGEGEKYVKAVFSLASKIA---PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1163)
Q Consensus 1023 ~~~Ge~E~~Ir~lF~~A~k~~---PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p 1099 (1163)
....... ...| ..+.. .+|||||||+.+- ...+..+...+++....+.+.....+.+++||+|+|+.
T Consensus 91 ~~~~~~~---~~~~--~~~~g~l~~~vl~iDEi~~~~-----~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 91 TMIYNQH---KGNF--EVKKGPVFSNFILADEVNRSP-----AKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp EEEEETT---TTEE--EEEECTTCSSEEEEETGGGSC-----HHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred ceeecCC---CCce--EeccCcccccEEEEEccccCC-----HHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 1110000 0000 00111 3799999999872 22222332332222212223222234578899999864
Q ss_pred C-----CCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhh
Q 001076 1100 F-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1134 (1163)
Q Consensus 1100 ~-----~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k 1134 (1163)
+ .+++++++||+..+.++.|+.++|.+|++..+..
T Consensus 161 ~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 161 EQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp CCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred cccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 3 3899999999888999999999999999998764
No 74
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.46 E-value=6.4e-13 Score=146.18 Aligned_cols=180 Identities=21% Similarity=0.231 Sum_probs=128.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecc
Q 001076 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMS 1018 (1163)
Q Consensus 944 ~~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL-----g~pfi~Id~s 1018 (1163)
...+|++++|++.+++.+...+.. ... .++||+||||+|||++|+++++.+ +.+++.++++
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 77 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYVER-------------KNI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTTTT-------------TCC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETT
T ss_pred CCCCHHHHhCCHHHHHHHHHHHhC-------------CCC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCc
Confidence 346799999999999988776531 112 349999999999999999999987 4568888887
Q ss_pred ccccccccchHHHHHHHHHHH-h-ccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEe
Q 001076 1019 SITSKWFGEGEKYVKAVFSLA-S-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1096 (1163)
Q Consensus 1019 eL~s~~~Ge~E~~Ir~lF~~A-~-k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTT 1096 (1163)
+..+ .......+....... . ...+.||||||+|.+. ....+.|+..++. ...++++|++|
T Consensus 78 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~------------~~~~~~L~~~le~----~~~~~~~i~~~ 139 (319)
T 2chq_A 78 DERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT------------ADAQAALRRTMEM----YSKSCRFILSC 139 (319)
T ss_dssp STTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC------------HHHHHTTGGGTSS----SSSSEEEEEEE
T ss_pred cccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC------------HHHHHHHHHHHHh----cCCCCeEEEEe
Confidence 6432 111122222222111 1 1347899999999873 1223444444443 23578899999
Q ss_pred CCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCHH
Q 001076 1097 NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 1156 (1163)
Q Consensus 1097 N~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySga 1156 (1163)
|.+..+.+.+.+|+ .++.+.+|+.+++.+++..++.+.++. ++..++.|+..+.|.-..
T Consensus 140 ~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~ 199 (319)
T 2chq_A 140 NYVSRIIEPIQSRC-AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRK 199 (319)
T ss_dssp SCGGGSCHHHHTTC-EEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHH
T ss_pred CChhhcchHHHhhC-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 99999999999999 489999999999999999998876653 556678888877775443
No 75
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=1.1e-12 Score=144.59 Aligned_cols=178 Identities=18% Similarity=0.176 Sum_probs=129.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSS 1019 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL-----g~pfi~Id~se 1019 (1163)
..+|++++|++..++.+...+.. .+. .++||+||+|+|||++|+++++.+ +.+++.+++++
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 82 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKD-------------GNM-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD 82 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHS-------------CCC-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred CCCHHHHHCCHHHHHHHHHHHHc-------------CCC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc
Confidence 35688999999999999888742 122 249999999999999999999986 45688888765
Q ss_pred cccccccchHHHHHHHHHHHh-------ccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEE
Q 001076 1020 ITSKWFGEGEKYVKAVFSLAS-------KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1163)
Q Consensus 1020 L~s~~~Ge~E~~Ir~lF~~A~-------k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlV 1092 (1163)
..+ ...++.++.... ...+.||||||+|.+. . ...+.|+..++. ....+.+
T Consensus 83 ~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~-----~-------~~~~~L~~~le~----~~~~~~~ 140 (323)
T 1sxj_B 83 DRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT-----A-------GAQQALRRTMEL----YSNSTRF 140 (323)
T ss_dssp CCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC-----H-------HHHHTTHHHHHH----TTTTEEE
T ss_pred ccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCC-----H-------HHHHHHHHHHhc----cCCCceE
Confidence 321 234444444433 2247899999999873 1 112233333332 2256788
Q ss_pred EEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCHHHHH
Q 001076 1093 LAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLK 1159 (1163)
Q Consensus 1093 IaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySgaDLk 1159 (1163)
|++||.+..+.+.+.+|+ .++.+++|+.++..++++.++...++. ++..+..|+..+.|....-+.
T Consensus 141 il~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~ 207 (323)
T 1sxj_B 141 AFACNQSNKIIEPLQSQC-AILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAIN 207 (323)
T ss_dssp EEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHH
T ss_pred EEEeCChhhchhHHHhhc-eEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 889999999999999998 489999999999999999988765543 556688899999887655444
No 76
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=99.46 E-value=2.8e-13 Score=137.34 Aligned_cols=110 Identities=24% Similarity=0.382 Sum_probs=87.8
Q ss_pred CCCCCCccceeccccC-CCCceeee-cceeEEccCCccceeecCCCCCccceEEEEee--cC--CcceEEEEEecCCceE
Q 001076 127 KVGSRIPWARLISQCS-QNSHLSMT-GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIE--NG--GPSGALLEITGGKGEV 200 (1163)
Q Consensus 127 ~~~~~~pW~rL~s~~~-~~p~~~i~-~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~--~~--g~~~a~le~~~~~G~v 200 (1163)
......||++|+.... ....+.+. +..|+|||+..||+.|.|+.+|..||+|.... .+ ....++|+|.|+|||
T Consensus 11 ~~~~~~~~~~L~~~~~~~g~~~~l~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~DlS~NGT- 89 (151)
T 2jqj_A 11 PSSEYTCLGHLVNLIPGKEQKVEITNRNVTTIGRSRSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNGT- 89 (151)
T ss_dssp CSSSCCEEEEEEEEETTEEEEEEEECCSCEEEESSTTSSEECCCTTCCTTSEEEEEEEEEETTEEEEEEEEEECCSSCE-
T ss_pred CCCCCCceEEEEEecCCCceEEEEcCCCeEEeCCCCCCCEEECCCCCccccCEEEEecccCCcCcCCEEEEEECCCCCe-
Confidence 3456679999999875 34477787 48999999999999999999999999999731 01 122488999999999
Q ss_pred EEcCeecCCCceEEeeCCCEEEEccCCCeeEEeeecCccc
Q 001076 201 EVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDDT 240 (1163)
Q Consensus 201 ~vNg~~~~k~~~~~L~~gDev~f~~~~~~ayifq~l~~~~ 240 (1163)
+|||+++.++ .+.|++||+|.|+.. ..|+|.-.....
T Consensus 90 ~VNg~~i~~~-~~~L~~GD~I~lG~~--~~~~f~~~~~~~ 126 (151)
T 2jqj_A 90 FINGNRLVKK-DYILKNGDRIVFGKS--CSFLFKYASSSS 126 (151)
T ss_dssp EETTEECCSS-CEEECSSEEEEETTT--EEEEEEECSSCC
T ss_pred EECCEEcCCC-ceECCCCCEEEECCC--cEEEEEEcCCCc
Confidence 7999999999 999999999999873 356666444333
No 77
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.46 E-value=2.5e-12 Score=135.15 Aligned_cols=178 Identities=17% Similarity=0.143 Sum_probs=117.4
Q ss_pred CCcccccC---cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 001076 946 VTFDDIGA---LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1163)
Q Consensus 946 ~tfddI~G---leevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~se 1019 (1163)
.+|+++++ ...+.+.+..++.. ....++||+||||||||+||+++++++ +.+++.+++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASG--------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHT--------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CChhhccCCCCCHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 57888876 24566666655531 123689999999999999999999887 48899999887
Q ss_pred cccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeC-C
Q 001076 1020 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN-R 1098 (1163)
Q Consensus 1020 L~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN-~ 1098 (1163)
+....... +. ....+.||||||++.+... ......+..+++.+.. ...+.+|++++ .
T Consensus 91 ~~~~~~~~--------~~--~~~~~~vliiDe~~~~~~~---~~~~~~l~~~l~~~~~---------~~~~~ii~~~~~~ 148 (242)
T 3bos_A 91 HASISTAL--------LE--GLEQFDLICIDDVDAVAGH---PLWEEAIFDLYNRVAE---------QKRGSLIVSASAS 148 (242)
T ss_dssp GGGSCGGG--------GT--TGGGSSEEEEETGGGGTTC---HHHHHHHHHHHHHHHH---------HCSCEEEEEESSC
T ss_pred HHHHHHHH--------HH--hccCCCEEEEeccccccCC---HHHHHHHHHHHHHHHH---------cCCCeEEEEcCCC
Confidence 65443211 11 1134789999999987321 0112223333332221 12333444444 3
Q ss_pred CC---CCCHHHHhccC--cEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCHHHHHh
Q 001076 1099 PF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKV 1160 (1163)
Q Consensus 1099 p~---~Ld~aLlrRFd--~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySgaDLk~ 1160 (1163)
+. .+.+.+.+||. .++.++.|+.+++.++++.++...++. ++..++.|+..+.| ...++..
T Consensus 149 ~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~ 215 (242)
T 3bos_A 149 PMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFD 215 (242)
T ss_dssp TTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHH
T ss_pred HHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHH
Confidence 43 45688999985 799999999999999999999865543 55667888888876 4445443
No 78
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.45 E-value=3.4e-13 Score=132.90 Aligned_cols=100 Identities=25% Similarity=0.286 Sum_probs=88.8
Q ss_pred CccceeccccCCCCceeeecc-------------eeEEccCCccceeecCC-CCCccceEEEEeecCCcceEEEEEecCC
Q 001076 132 IPWARLISQCSQNSHLSMTGA-------------VFTVGHNRQCDLYLKDP-SISKNLCRLRRIENGGPSGALLEITGGK 197 (1163)
Q Consensus 132 ~pW~rL~s~~~~~p~~~i~~~-------------~~t~G~~~~cd~~l~d~-~~s~~~c~l~~~~~~g~~~a~le~~~~~ 197 (1163)
..||||.++..++|++.+... .++|||+..||+.|+|+ .+|..||+|...+ +|. ++|+|.|+|
T Consensus 3 ~~~~~L~~~~~~~p~~~l~~~~~~i~~~~~~~~~~~~IGR~~~~di~l~~~~~vSr~Ha~i~~~~-~g~--~~l~DlS~N 79 (127)
T 1g6g_A 3 NIVCRVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGE-DGN--LLLNDISTN 79 (127)
T ss_dssp EEEEEEEESSSSSCCEEEEECHHHHHHCCSSCCEEEEEESSTTSSEECCSCTTSCSSCEEEEECT-TSC--EEEEECCSS
T ss_pred ceEEEEEECCCCCCceEeeccccceeeeeecCCCCEEECCCCCCCEEeCCCCCCChhHeEEEECC-CCc--EEEEECCcC
Confidence 479999999999999999877 99999999999999998 5999999999742 344 889999999
Q ss_pred ceEEEcCeecCCCceEEeeCCCEEEEccCC---CeeEEeee
Q 001076 198 GEVEVNGNVHPKDSQVVLRGGDELVFSPSG---KHSYIFQQ 235 (1163)
Q Consensus 198 G~v~vNg~~~~k~~~~~L~~gDev~f~~~~---~~ayifq~ 235 (1163)
|| +|||+++.++..+.|+.||+|.|+... ...|+|+.
T Consensus 80 GT-~vNg~~l~~~~~~~L~~Gd~I~lG~~~~~~~i~f~~~~ 119 (127)
T 1g6g_A 80 GT-WLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIFI 119 (127)
T ss_dssp CC-EETTEECCTTCCEECCTTCEEEECTTSGGGCEEEEEEE
T ss_pred Ce-EECCEEcCCCCeEEcCCCCEEEECCCccCceEEEEEEe
Confidence 99 799999999999999999999999864 45688764
No 79
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.44 E-value=9.3e-13 Score=147.39 Aligned_cols=178 Identities=19% Similarity=0.246 Sum_probs=125.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC------CcEEEEecc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG------ANFINISMS 1018 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg------~pfi~Id~s 1018 (1163)
..+|++++|++++++.+...+.. + .+ .++||+||||+|||++|+++++.++ ..++.++++
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~----------~---~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKS----------A---NL-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTC----------T---TC-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred CCCHHHhhCCHHHHHHHHHHHhc----------C---CC-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 35789999999999988887642 1 12 3599999999999999999998864 468888876
Q ss_pred ccccccccchHHHHHHHHHHHh----------------ccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCC
Q 001076 1019 SITSKWFGEGEKYVKAVFSLAS----------------KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1082 (1163)
Q Consensus 1019 eL~s~~~Ge~E~~Ir~lF~~A~----------------k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl 1082 (1163)
+..+ ...++..+.... ...+.||||||+|.+. .. ..+.|+..++..
T Consensus 99 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~-----~~-------~~~~Ll~~le~~ 160 (353)
T 1sxj_D 99 DERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT-----AD-------AQSALRRTMETY 160 (353)
T ss_dssp SCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC-----HH-------HHHHHHHHHHHT
T ss_pred cccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC-----HH-------HHHHHHHHHHhc
Confidence 6421 112222111111 1245799999999883 11 123333333322
Q ss_pred cccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCC-CChhhHHHHHHHcCCCCHHHHH
Q 001076 1083 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSGSDLK 1159 (1163)
Q Consensus 1083 ~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l-~~dvdl~~LA~~TeGySgaDLk 1159 (1163)
..+..+|+++|.+..+.+.+++|+. .+.+.+|+.++...+++..+...++ .++..++.|+..+.|.-..-+.
T Consensus 161 ----~~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 161 ----SGVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp ----TTTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHH
T ss_pred ----CCCceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 2356777888999999999999994 8999999999999999998876654 3566788999999887554333
No 80
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.44 E-value=5.6e-13 Score=149.24 Aligned_cols=165 Identities=20% Similarity=0.269 Sum_probs=98.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------c------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------N------ 1011 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~-------p------ 1011 (1163)
..+|++++|++.+++.+...+.. ....++||+||||||||++|+++++.++. +
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~--------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVD--------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHC--------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCchhccChHHHHHHHHHHhhC--------------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 46799999999987765443321 01246999999999999999999999862 2
Q ss_pred --------------------EEEEeccccccccccchHHHHHHHHHHHh---------ccCCeEEEEccccccccCCCCc
Q 001076 1012 --------------------FINISMSSITSKWFGEGEKYVKAVFSLAS---------KIAPSVVFVDEVDSMLGRRENP 1062 (1163)
Q Consensus 1012 --------------------fi~Id~seL~s~~~Ge~E~~Ir~lF~~A~---------k~~PsILfIDEID~L~g~r~s~ 1062 (1163)
++.+.........+|.. .+...|..+. ...++||||||||.+. .
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~-----~ 158 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLE-----D 158 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC-----H
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCC-----H
Confidence 12111111011111110 0111222221 1136899999999873 1
Q ss_pred chHHHHHHHHHHHHHHh--cCCcccCCCCEEEEEEeCCCC-CCCHHHHhccCcEEEecCC-CHHHHHHHHHH
Q 001076 1063 GEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLP-DAPNREKIIRV 1130 (1163)
Q Consensus 1063 ~~~eal~~il~~LL~~L--dgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRFd~vI~I~~P-d~eeR~eILk~ 1130 (1163)
..+..+..+++.-...+ .+.....+.++++|+|+|... .+++++++||+.++.++.| +.++|.+|++.
T Consensus 159 ~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 159 HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHH
Confidence 12222222221100001 111111124799999999744 8999999999888999998 67778788876
No 81
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.42 E-value=3.6e-13 Score=156.04 Aligned_cols=109 Identities=25% Similarity=0.389 Sum_probs=99.0
Q ss_pred CCccceeccccCCCCceeeecceeEEccCCccceeecCCCC---------CccceEEEEe-ecCCcceEEEEEecCCceE
Q 001076 131 RIPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPSI---------SKNLCRLRRI-ENGGPSGALLEITGGKGEV 200 (1163)
Q Consensus 131 ~~pW~rL~s~~~~~p~~~i~~~~~t~G~~~~cd~~l~d~~~---------s~~~c~l~~~-~~~g~~~a~le~~~~~G~v 200 (1163)
..|||+|.+....++.+++....|+|||+..||+.|+|+.+ |..||+|++. ..++..+++|+|.|+|||
T Consensus 7 ~~~~g~l~~~~~~~~~~~l~~~~~~iGR~~~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~~~~i~D~S~nGt- 85 (419)
T 3i6u_A 7 PAPWARLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNGT- 85 (419)
T ss_dssp CCCSEEEEECSSSSCCEEECSSEEEEESSTTSSEETTCTTGGGCSGGGGSCTTCEEEECCEETTTEECCEEEECCSSCE-
T ss_pred CCCceEeeecCCCCCceEecCCCEEecCCCccCEEECCcccccccccccccccceEEEEEcCCCCceEEEEEECCcCCc-
Confidence 34999999999999999999999999999999999999986 9999999765 345566799999999999
Q ss_pred EEcCeecCCCceEEeeCCCEEEEccCCCeeEEeeecCccc
Q 001076 201 EVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDDT 240 (1163)
Q Consensus 201 ~vNg~~~~k~~~~~L~~gDev~f~~~~~~ayifq~l~~~~ 240 (1163)
+|||+.++|+.+.+|++||+|.|+...++.|+|+++..+.
T Consensus 86 ~vn~~~~~~~~~~~l~~~d~i~~~~~~~~~~~~~~~~~~~ 125 (419)
T 3i6u_A 86 FVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTVDD 125 (419)
T ss_dssp EETTEECCTTCEEECCTTEEEEESSTTCEEEEEEESCSSC
T ss_pred eECcccccCCCcccCCCCCEeeeeccccceEEEecccccc
Confidence 6999999999999999999999999999999999886443
No 82
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.42 E-value=3.5e-12 Score=143.83 Aligned_cols=174 Identities=24% Similarity=0.276 Sum_probs=126.7
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 1011 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p-------------- 1011 (1163)
.+|++++|++..++.+...+.. .+.+..+||+||+|+|||++|+++++.++..
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~-------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 79 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSL-------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHH-------------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHH
T ss_pred CchhhccCcHHHHHHHHHHHHh-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 4688999999999999888742 1233568999999999999999999998542
Q ss_pred ----------EEEEeccccccccccchHHHHHHHHHHHhc----cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHH
Q 001076 1012 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1077 (1163)
Q Consensus 1012 ----------fi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k----~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~ 1077 (1163)
++.++...- .....++.++..+.. ..+.||||||+|.+. ....+.|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~------------~~~~~~Ll~ 141 (373)
T 1jr3_A 80 REIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALLK 141 (373)
T ss_dssp HHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC------------HHHHHHHHH
T ss_pred HHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhc------------HHHHHHHHH
Confidence 233332210 111235566665543 346899999999872 122344555
Q ss_pred HhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCH
Q 001076 1078 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1163)
Q Consensus 1078 ~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySg 1155 (1163)
.++. ...++++|++|+.+..+.+.+++|+ .++.+.+|+.++..++++.++.+.++. ++..+..|+..+.|.-.
T Consensus 142 ~le~----~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r 215 (373)
T 1jr3_A 142 TLEE----PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLR 215 (373)
T ss_dssp HHHS----CCSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHH
T ss_pred HHhc----CCCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHH
Confidence 5543 2356888989988889999999998 789999999999999999998776544 45567889999988544
No 83
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.41 E-value=3.6e-12 Score=140.66 Aligned_cols=180 Identities=23% Similarity=0.284 Sum_probs=125.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEeccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 1019 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg-----~pfi~Id~se 1019 (1163)
..+|++++|++++++.+...+.. + +. .++||+||||+|||++|+++++.+. ..++.+++++
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~----------~---~~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKT----------G---SM-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD 86 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHH----------T---CC-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred CCCHHHhhCCHHHHHHHHHHHHc----------C---CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc
Confidence 35788999999999999887752 1 12 3599999999999999999999873 4577888765
Q ss_pred cccccccchHHHHHHHHHHH--hccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeC
Q 001076 1020 ITSKWFGEGEKYVKAVFSLA--SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1097 (1163)
Q Consensus 1020 L~s~~~Ge~E~~Ir~lF~~A--~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN 1097 (1163)
..+. ......+....... ....+.||||||+|.+. .. ..+.|+..++.. ...+.+|+++|
T Consensus 87 ~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----~~-------~~~~L~~~le~~----~~~~~~i~~~~ 148 (327)
T 1iqp_A 87 ERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALT-----QD-------AQQALRRTMEMF----SSNVRFILSCN 148 (327)
T ss_dssp HHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-----HH-------HHHHHHHHHHHT----TTTEEEEEEES
T ss_pred cCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-----HH-------HHHHHHHHHHhc----CCCCeEEEEeC
Confidence 3221 11111122111100 11357899999999873 11 123333333321 24678888999
Q ss_pred CCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCHHH
Q 001076 1098 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSD 1157 (1163)
Q Consensus 1098 ~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySgaD 1157 (1163)
.+..+.+.+.+|+. .+.+++|+.++..++++.++...++. ++..++.|+..+.|....-
T Consensus 149 ~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~ 208 (327)
T 1iqp_A 149 YSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRA 208 (327)
T ss_dssp CGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHH
T ss_pred CccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHH
Confidence 99999999999995 89999999999999999998776543 5566888888888755443
No 84
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.39 E-value=7.1e-12 Score=140.82 Aligned_cols=190 Identities=17% Similarity=0.221 Sum_probs=130.1
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh------CCcEEEEecccc
Q 001076 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------GANFINISMSSI 1020 (1163)
Q Consensus 947 tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL------g~pfi~Id~seL 1020 (1163)
.+++++|.++..+.+.+.+...+. ...+..++|+||+|+|||+|++++++.+ +.+++.+++...
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~----------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR----------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG----------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 346899999999999887643211 1234679999999999999999999988 889999997642
Q ss_pred cc------c----------cccc-hHHHHHHHHHHHhccC-CeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCC
Q 001076 1021 TS------K----------WFGE-GEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1082 (1163)
Q Consensus 1021 ~s------~----------~~Ge-~E~~Ir~lF~~A~k~~-PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl 1082 (1163)
.. . ..+. .......++....... |.||||||++.+...... .++..++..++..
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~--------~~l~~l~~~~~~~ 159 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND--------DILYKLSRINSEV 159 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS--------THHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC--------HHHHHHhhchhhc
Confidence 21 0 0111 2233445555554443 899999999988633211 2334444444433
Q ss_pred cccCCCCEEEEEEeCCC---CCCCHHHHhccC-cEEEecCCCHHHHHHHHHHHHhhC---CCCChhhHHHHHHHcC---C
Q 001076 1083 RTKDKERVLVLAATNRP---FDLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAKE---ELASDVDLEGIANMAD---G 1152 (1163)
Q Consensus 1083 ~~k~~~~VlVIaTTN~p---~~Ld~aLlrRFd-~vI~I~~Pd~eeR~eILk~ll~k~---~l~~dvdl~~LA~~Te---G 1152 (1163)
...++.+|++|+.+ ..+++.+.+||. ..+.+++++.++..+|++..+... ....+..+..++..+. |
T Consensus 160 ---~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G 236 (386)
T 2qby_A 160 ---NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHG 236 (386)
T ss_dssp ---CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTC
T ss_pred ---CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 23578999999876 467888888886 489999999999999999987642 2235556777888887 7
Q ss_pred CCHHH
Q 001076 1153 YSGSD 1157 (1163)
Q Consensus 1153 ySgaD 1157 (1163)
+...-
T Consensus 237 ~~r~~ 241 (386)
T 2qby_A 237 DARRA 241 (386)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 65543
No 85
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.39 E-value=3.2e-12 Score=144.33 Aligned_cols=159 Identities=9% Similarity=0.081 Sum_probs=112.9
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecccc
Q 001076 951 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSI 1020 (1163)
Q Consensus 951 I~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL----------g~pfi~Id~seL 1020 (1163)
+.+.++..+.+..++...+. ...+.++||+||||||||++++++++++ .+.++.++|..+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~----------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~ 91 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM----------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL 91 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC
T ss_pred cCCHHHHHHHHHHHHHHHhc----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc
Confidence 34666777777666643221 2245789999999999999999999998 467889998764
Q ss_pred ccc----------c------ccchHHHHHHHHHHH--hccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCC
Q 001076 1021 TSK----------W------FGEGEKYVKAVFSLA--SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1082 (1163)
Q Consensus 1021 ~s~----------~------~Ge~E~~Ir~lF~~A--~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl 1082 (1163)
.+. . .+.....+..+|... .+..+.||||||||.|. .+..+ ..|+... .
T Consensus 92 ~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-------~q~~L----~~l~~~~-~- 158 (318)
T 3te6_A 92 AGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-------SEKIL----QYFEKWI-S- 158 (318)
T ss_dssp C--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-------CTHHH----HHHHHHH-H-
T ss_pred CCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-------cchHH----HHHHhcc-c-
Confidence 322 1 233456778888875 45568999999999985 12333 3333221 1
Q ss_pred cccCCCCEEEEEEeCCCCCCC----HHHHhccC-cEEEecCCCHHHHHHHHHHHHhh
Q 001076 1083 RTKDKERVLVLAATNRPFDLD----EAVVRRLP-RRLMVNLPDAPNREKIIRVILAK 1134 (1163)
Q Consensus 1083 ~~k~~~~VlVIaTTN~p~~Ld----~aLlrRFd-~vI~I~~Pd~eeR~eILk~ll~k 1134 (1163)
....+++||+++|..+..+ +.+.+||. .+|.|++++.++..+|++..+..
T Consensus 159 --~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 159 --SKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp --CSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred --ccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 1346899999999876544 34567886 68999999999999999998876
No 86
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.38 E-value=3.7e-12 Score=140.17 Aligned_cols=257 Identities=16% Similarity=0.166 Sum_probs=164.3
Q ss_pred HHHHhcccCCccccccccccccccchhHHHHHHHhhhhhhcccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHh
Q 001076 437 DSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAK 516 (1163)
Q Consensus 437 ~~l~~~i~~~~~~~vsf~~FPYylse~Tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgpagsE~Yqe~LaKALA~ 516 (1163)
+.+.+.+++ +.-.++|+++ +=.+..+..|..+....+++++... .+....+.|||.||+| .-..+||||+|+
T Consensus 5 ~~~~~~~~~-~~~~~~~~~i--~G~~~~~~~l~~~i~~~~~~~~~~~---~~~~~~~~vll~Gp~G--tGKT~la~~la~ 76 (297)
T 3b9p_A 5 QLILDEIVE-GGAKVEWTDI--AGQDVAKQALQEMVILPSVRPELFT---GLRAPAKGLLLFGPPG--NGKTLLARAVAT 76 (297)
T ss_dssp HHHHTTTBC-CSSCCCGGGS--CCCHHHHHHHHHHTHHHHHCGGGSC---GGGCCCSEEEEESSSS--SCHHHHHHHHHH
T ss_pred HHHHHHhcc-CCCCCCHHHh--CChHHHHHHHHHHHHhhhhCHHHHh---cCCCCCCeEEEECcCC--CCHHHHHHHHHH
Confidence 344455554 3457899984 4568889999888877777765432 2334567899999999 578999999999
Q ss_pred hcCCeEEEEeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCC
Q 001076 517 HFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKN 596 (1163)
Q Consensus 517 ~f~a~LLilDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (1163)
.++.+++-++...+.+
T Consensus 77 ~~~~~~~~i~~~~l~~---------------------------------------------------------------- 92 (297)
T 3b9p_A 77 ECSATFLNISAASLTS---------------------------------------------------------------- 92 (297)
T ss_dssp HTTCEEEEEESTTTSS----------------------------------------------------------------
T ss_pred HhCCCeEEeeHHHHhh----------------------------------------------------------------
Confidence 8776655443211110
Q ss_pred cccccCCceeeeccCCCCcccCCCCCCCCCcccCeeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCccccccccc
Q 001076 597 YTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLR 676 (1163)
Q Consensus 597 ~~~~~gdrvk~~g~~~~~~~~~~~~~~p~~g~rg~v~~~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~~ 676 (1163)
T Consensus 93 -------------------------------------------------------------------------------- 92 (297)
T 3b9p_A 93 -------------------------------------------------------------------------------- 92 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcCC--------hhhHHHHHHHHhcCC-----CCEEEEEe
Q 001076 677 LDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENLP-----SNVVVIGS 743 (1163)
Q Consensus 677 ~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~~--------~~~~~~i~s~L~~L~-----g~VivIgs 743 (1163)
.|.++....++.+|+.+.. .+|.||||||+|.++..+ ..+...+...++.+. ++|+||++
T Consensus 93 ----~~~~~~~~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~ 165 (297)
T 3b9p_A 93 ----KYVGDGEKLVRALFAVARH---MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAA 165 (297)
T ss_dssp ----SSCSCHHHHHHHHHHHHHH---TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEE
T ss_pred ----cccchHHHHHHHHHHHHHH---cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEee
Confidence 0111223455566666554 789999999999965532 223334445555553 46999999
Q ss_pred ccccccccccCCCCCceeeccCCchhhhccccCCCCccccccccccchHHHHHhhhccccceeecCCchhHHHHHHHHHH
Q 001076 744 HTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQL 823 (1163)
Q Consensus 744 ~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~ 823 (1163)
+|+++. ||+ +++|||+..+
T Consensus 166 tn~~~~----------------------l~~---------------------------------------~l~~R~~~~i 184 (297)
T 3b9p_A 166 TNRPQE----------------------LDE---------------------------------------AALRRFTKRV 184 (297)
T ss_dssp ESCGGG----------------------BCH---------------------------------------HHHHHCCEEE
T ss_pred cCChhh----------------------CCH---------------------------------------HHHhhCCeEE
Confidence 995433 222 5555666556
Q ss_pred HHhhhhhhccchhhHHHhhhhcCCCCcccccchhhcccCCchhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhh
Q 001076 824 ERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYG 903 (1163)
Q Consensus 824 e~~LpdlkgR~~Il~IHT~l~~~~L~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~ 903 (1163)
++++|+...|..|++.+.......+++.+++.++..+.||++++|+.||..|+..++++......+ .........+.
T Consensus 185 ~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~---~~~~~~~~~i~ 261 (297)
T 3b9p_A 185 YVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVK---CLDISAMRAIT 261 (297)
T ss_dssp ECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-----------CCCCCCCC
T ss_pred EeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcc---cccccccCCcC
Confidence 666666666666666654433345677889999999999999999999999999998765321111 11111223456
Q ss_pred HHHHHhhhhhhhh
Q 001076 904 LNILQGIQSESKS 916 (1163)
Q Consensus 904 ~~dF~~al~eikp 916 (1163)
..+|..++..+++
T Consensus 262 ~~d~~~a~~~~~~ 274 (297)
T 3b9p_A 262 EQDFHSSLKRIRR 274 (297)
T ss_dssp HHHHHHHTTSCCC
T ss_pred HHHHHHHHHHcCC
Confidence 7788777666544
No 87
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.38 E-value=1.2e-12 Score=141.98 Aligned_cols=160 Identities=19% Similarity=0.183 Sum_probs=95.9
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecccccc
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITS 1022 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg---~pfi~Id~seL~s 1022 (1163)
.+|++++|.+..++.+.+.+..... ...+|||+||||||||++|+++++.+. .+|+.++|+.+..
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~------------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~ 70 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP------------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE 70 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT------------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC------------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh
Confidence 4788999999998888877653211 225799999999999999999999884 7899999987632
Q ss_pred c-----cccchHHHH-------HHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCC-------c
Q 001076 1023 K-----WFGEGEKYV-------KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-------R 1083 (1163)
Q Consensus 1023 ~-----~~Ge~E~~I-------r~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl-------~ 1083 (1163)
. .+|...... ...|..+ ..++||||||+.+- ...+ ..|+..++.. .
T Consensus 71 ~~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~-----~~~q-------~~Ll~~l~~~~~~~~g~~ 135 (265)
T 2bjv_A 71 NLLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP-----MMVQ-------EKLLRVIEYGELERVGGS 135 (265)
T ss_dssp HHHHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSC-----HHHH-------HHHHHHHHHCEECCCCC-
T ss_pred hHHHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcC-----HHHH-------HHHHHHHHhCCeecCCCc
Confidence 2 122111100 1123222 35899999999883 1122 2233333211 1
Q ss_pred ccCCCCEEEEEEeCCC-------CCCCHHHHhccCcEEEecCCCHHHH----HHHHHHHHh
Q 001076 1084 TKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNR----EKIIRVILA 1133 (1163)
Q Consensus 1084 ~k~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~I~~Pd~eeR----~eILk~ll~ 1133 (1163)
.....++.||+|||.+ ..+.+.+.+||.. +.+..|+..+| ..++++++.
T Consensus 136 ~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~-~~i~lp~L~~R~~di~~l~~~~l~ 195 (265)
T 2bjv_A 136 QPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAF-DVVQLPPLRERESDIMLMAEYFAI 195 (265)
T ss_dssp -CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCS-EEEECCCGGGCHHHHHHHHHHHHH
T ss_pred ccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcC-cEEeCCChhhhhHHHHHHHHHHHH
Confidence 1112468899999974 3578999999953 56666666554 445555543
No 88
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.38 E-value=4.3e-12 Score=144.76 Aligned_cols=255 Identities=14% Similarity=0.150 Sum_probs=160.6
Q ss_pred HHhcccCCccccccccccccccchhHHHHHHHhhhhhhcccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhc
Q 001076 439 LQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF 518 (1163)
Q Consensus 439 l~~~i~~~~~~~vsf~~FPYylse~Tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgpagsE~Yqe~LaKALA~~f 518 (1163)
+.+.+++. .-.++|+++ +-.+..+..|....-..+++.+..+ .+....+.|||.||+| .-..+||||+|+.+
T Consensus 70 i~~~i~~~-~~~~~~~~i--~G~~~~~~~l~~~i~~~~~~~~~~~---~~~~~~~~vLl~GppG--tGKT~la~aia~~~ 141 (357)
T 3d8b_A 70 IMNEIMDH-GPPVNWEDI--AGVEFAKATIKEIVVWPMLRPDIFT---GLRGPPKGILLFGPPG--TGKTLIGKCIASQS 141 (357)
T ss_dssp HHHHTBCC-SCCCCGGGS--CSCHHHHHHHHHHTHHHHHCTTTSC---GGGSCCSEEEEESSTT--SSHHHHHHHHHHHT
T ss_pred HHhhcccC-CCCCCHHHh--CChHHHHHHHHHHHHHHhhChHhHh---hccCCCceEEEECCCC--CCHHHHHHHHHHHc
Confidence 34444443 346889884 6678888888888776777766432 2234567899999999 68899999999988
Q ss_pred CCeEEEEeccCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccccCCcc
Q 001076 519 SARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYT 598 (1163)
Q Consensus 519 ~a~LLilDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (1163)
+.+++.++...+.
T Consensus 142 ~~~~~~i~~~~l~------------------------------------------------------------------- 154 (357)
T 3d8b_A 142 GATFFSISASSLT------------------------------------------------------------------- 154 (357)
T ss_dssp TCEEEEEEGGGGC-------------------------------------------------------------------
T ss_pred CCeEEEEehHHhh-------------------------------------------------------------------
Confidence 7665544432111
Q ss_pred cccCCceeeeccCCCCcccCCCCCCCCCcccCeeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCccccccccccc
Q 001076 599 FKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLD 678 (1163)
Q Consensus 599 ~~~gdrvk~~g~~~~~~~~~~~~~~p~~g~rg~v~~~~e~n~~~kvgV~Fd~~~~~~~~l~~~c~~~~~ff~~~~~~~~d 678 (1163)
T Consensus 155 -------------------------------------------------------------------------------- 154 (357)
T 3d8b_A 155 -------------------------------------------------------------------------------- 154 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcCC----hhhH----HHHHHHHhcC----CCCEEEEEeccc
Q 001076 679 SSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN----NDAY----GALKSKLENL----PSNVVVIGSHTQ 746 (1163)
Q Consensus 679 ~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~~----~~~~----~~i~s~L~~L----~g~VivIgs~~~ 746 (1163)
++|.++.+..++.+|+.+.. .+|.||||||||.+...+ .+.. +.+...|+.+ ..+|+||+++|+
T Consensus 155 -~~~~g~~~~~~~~~~~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~ 230 (357)
T 3d8b_A 155 -SKWVGEGEKMVRALFAVARC---QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNR 230 (357)
T ss_dssp -CSSTTHHHHHHHHHHHHHHH---TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESC
T ss_pred -ccccchHHHHHHHHHHHHHh---cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCC
Confidence 11333345556666666654 789999999999965432 2222 2333333332 358999999995
Q ss_pred cccccccCCCCCceeeccCCchhhhccccCCCCccccccccccchHHHHHhhhccccceeecCCchhHHHHHHHHHHHHh
Q 001076 747 LDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERD 826 (1163)
Q Consensus 747 ~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~ 826 (1163)
++. ||+ +++|||.+.++++
T Consensus 231 ~~~----------------------l~~---------------------------------------~l~~Rf~~~i~i~ 249 (357)
T 3d8b_A 231 PQE----------------------IDE---------------------------------------AARRRLVKRLYIP 249 (357)
T ss_dssp GGG----------------------BCH---------------------------------------HHHTTCCEEEECC
T ss_pred hhh----------------------CCH---------------------------------------HHHhhCceEEEeC
Confidence 332 222 4445555555555
Q ss_pred hhhhhccchhhHHHhhhhcCCCCcccccchhhcccCCchhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHHH
Q 001076 827 VETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNI 906 (1163)
Q Consensus 827 LpdlkgR~~Il~IHT~l~~~~L~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~d 906 (1163)
+|+...|..|++.+.......+.+.+++.|+..+.||++++|..||..|...++++...... ..........+...+
T Consensus 250 ~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~---~~~~~~~~~~i~~~d 326 (357)
T 3d8b_A 250 LPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADI---ATITPDQVRPIAYID 326 (357)
T ss_dssp CCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC-------------CCCBCHHH
T ss_pred CcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhh---ccccccccCCcCHHH
Confidence 55555555666555433333467788999999999999999999999999988875432111 111112223457788
Q ss_pred HHhhhhhhhh
Q 001076 907 LQGIQSESKS 916 (1163)
Q Consensus 907 F~~al~eikp 916 (1163)
|..++.+++|
T Consensus 327 ~~~al~~~~p 336 (357)
T 3d8b_A 327 FENAFRTVRP 336 (357)
T ss_dssp HHHHHHHHGG
T ss_pred HHHHHHhcCC
Confidence 8888777765
No 89
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.37 E-value=2.1e-11 Score=137.85 Aligned_cols=182 Identities=15% Similarity=0.082 Sum_probs=126.6
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCc--eEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccc
Q 001076 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCK--GILLFGPPGTGKTMLAKAVATEA----GANFINISMSSIT 1021 (1163)
Q Consensus 948 fddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~k--gVLL~GPPGTGKT~LArALA~eL----g~pfi~Id~seL~ 1021 (1163)
+++++|.++.++.+...+...+. + ..+. .++|+||+|+|||+|++++++.+ +.+++.++|....
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~-------~---~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLR-------N---PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHH-------S---TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred CCCCCChHHHHHHHHHHHHHHHc-------C---CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 36799999999999888754221 1 1223 79999999999999999999998 6789999976532
Q ss_pred cc---------c-------ccc-hHHHHHHHHHHHhc-cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCc
Q 001076 1022 SK---------W-------FGE-GEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1083 (1163)
Q Consensus 1022 s~---------~-------~Ge-~E~~Ir~lF~~A~k-~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~ 1083 (1163)
.. . .+. .......+...... ..|.||||||++.+ . ...+..|+..+....
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----~-------~~~~~~L~~~~~~~~ 153 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----A-------PDILSTFIRLGQEAD 153 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----C-------HHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----c-------hHHHHHHHHHHHhCC
Confidence 10 0 011 12222333333322 35889999999977 1 223444444443322
Q ss_pred ccCCCCEEEEEEeCCC---CCCCHHHHhccCc-EEEecCCCHHHHHHHHHHHHhh---CCCCChhhHHHHHHHcC
Q 001076 1084 TKDKERVLVLAATNRP---FDLDEAVVRRLPR-RLMVNLPDAPNREKIIRVILAK---EELASDVDLEGIANMAD 1151 (1163)
Q Consensus 1084 ~k~~~~VlVIaTTN~p---~~Ld~aLlrRFd~-vI~I~~Pd~eeR~eILk~ll~k---~~l~~dvdl~~LA~~Te 1151 (1163)
.....++.||+++|.+ ..+++.+.+||.. .+.+++++.++..++++..+.. ....++..++.++..+.
T Consensus 154 ~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (389)
T 1fnn_A 154 KLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITG 228 (389)
T ss_dssp HHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHS
T ss_pred CCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 1111478999999887 6788999999875 8999999999999999998865 23346677889999994
No 90
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.35 E-value=9.6e-12 Score=139.82 Aligned_cols=181 Identities=14% Similarity=0.208 Sum_probs=121.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~-------------- 1010 (1163)
..+|++++|++.+++.+...+.. . .+.+. +||+||+|+|||++++++++++..
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~---------~---~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQ---------P---RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTC---------T---TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred CCCHHHhcCCHHHHHHHHHHHhh---------C---CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 46799999999998888765510 1 12223 999999999999999999996511
Q ss_pred ---------------cEEEEeccccccccccchHHHHHHHHHHHh--------------ccCCeEEEEccccccccCCCC
Q 001076 1011 ---------------NFINISMSSITSKWFGEGEKYVKAVFSLAS--------------KIAPSVVFVDEVDSMLGRREN 1061 (1163)
Q Consensus 1011 ---------------pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~--------------k~~PsILfIDEID~L~g~r~s 1061 (1163)
+++.++..... ......++..+..+. ...|.||+|||++.| +
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L-----~ 147 (354)
T 1sxj_E 77 TASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL-----T 147 (354)
T ss_dssp ---------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS-----C
T ss_pred ccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc-----C
Confidence 12222221110 000112444444332 225679999999986 1
Q ss_pred cchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-C-
Q 001076 1062 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-S- 1139 (1163)
Q Consensus 1062 ~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~- 1139 (1163)
.. ..+.++..++.. ..+..+|.+|+.+..+.+.+++|+ .++.|++|+.+++.++++.++.+.++. +
T Consensus 148 ~~-------~~~~L~~~le~~----~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (354)
T 1sxj_E 148 KD-------AQAALRRTMEKY----SKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERIQLET 215 (354)
T ss_dssp HH-------HHHHHHHHHHHS----TTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCEECC
T ss_pred HH-------HHHHHHHHHHhh----cCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCc
Confidence 11 122333333322 135788888999999999999999 889999999999999999998776643 4
Q ss_pred hhhHHHHHHHcCCCCHHHHH
Q 001076 1140 DVDLEGIANMADGYSGSDLK 1159 (1163)
Q Consensus 1140 dvdl~~LA~~TeGySgaDLk 1159 (1163)
+..+..|+..+.|-...-+.
T Consensus 216 ~~~l~~i~~~~~G~~r~a~~ 235 (354)
T 1sxj_E 216 KDILKRIAQASNGNLRVSLL 235 (354)
T ss_dssp SHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHH
Confidence 56788999999886554443
No 91
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.35 E-value=1.8e-13 Score=162.78 Aligned_cols=230 Identities=17% Similarity=0.229 Sum_probs=139.8
Q ss_pred eeeeecCCCCCCCCCCC--CCCCCCCccccccccccc-CCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcCC
Q 001076 644 IGVRFDRSIPEGNNLGG--FCEDDHGFFCTASSLRLD-SSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN 720 (1163)
Q Consensus 644 vgV~Fd~~~~~~~~l~~--~c~~~~~ff~~~~~~~~d-~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~~ 720 (1163)
-||.|.+|.|+||++-. .+......|.... |-+ .+.|.++.+..++.+|+.+.. .+|.||||||||.+..++
T Consensus 239 ~~vLL~GppGtGKT~lAraia~~~~~~fv~vn--~~~l~~~~~g~~~~~~~~~f~~A~~---~~p~iLfLDEId~l~~~~ 313 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVANETGAFFFLIN--GPEIMSKLAGESESNLRKAFEEAEK---NAPAIIFIDELDAIAPKR 313 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSEEEEEE--HHHHHTSCTTHHHHHHHHHHHHHHH---TCSEEEEEESHHHHCBCT
T ss_pred CcEEEECcCCCCHHHHHHHHHHHhCCCEEEEE--chHhhhhhcchhHHHHHHHHHHHHh---cCCcEEEecchhhhcccc
Confidence 46888899999999872 1221223232222 211 277889888889888888766 889999999999965532
Q ss_pred ----hhhHHHHHHHHhcC------CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCccccccccccc
Q 001076 721 ----NDAYGALKSKLENL------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKET 790 (1163)
Q Consensus 721 ----~~~~~~i~s~L~~L------~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~~~ 790 (1163)
.+....++..|+.+ +++|+||+++|+++. ||+
T Consensus 314 ~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~----------------------Ld~---------------- 355 (489)
T 3hu3_A 314 EKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS----------------------IDP---------------- 355 (489)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGG----------------------BCG----------------
T ss_pred ccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccc----------------------cCH----------------
Confidence 44444555555433 559999999996443 333
Q ss_pred hHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhhhhcCCC-CcccccchhhcccCCchhh
Q 001076 791 PKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEG 867 (1163)
Q Consensus 791 ~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~sgad 867 (1163)
+++| ||.+.+++++|+...|.+|+++|.. .-.+ .+.++..++..+.||++++
T Consensus 356 -----------------------al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~--~~~l~~~~~l~~la~~t~g~s~~d 410 (489)
T 3hu3_A 356 -----------------------ALRRFGRFDREVDIGIPDATGRLEILQIHTK--NMKLADDVDLEQVANETHGHVGAD 410 (489)
T ss_dssp -----------------------GGGSTTSSCEEEECCCCCHHHHHHHHHHHTT--TSCBCTTCCHHHHHHTCTTCCHHH
T ss_pred -----------------------HHhCCCcCceEEEeCCCCHHHHHHHHHHHHh--cCCCcchhhHHHHHHHccCCcHHH
Confidence 3333 5555566666666667778887754 2233 6778999999999999999
Q ss_pred hhhHHhHHhhhhhhhcCCCCCCC-Ccc-cccccchhhhHHHHHhhhhhhhhhhhhhhcccchhHHHHHHhcCCCCCCCCC
Q 001076 868 VEKIVGWALSHHFMHCSEAPGKD-AKL-KISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIG 945 (1163)
Q Consensus 868 Ie~Lv~~Aas~Al~r~~~qi~~~-~kl-~Id~~sI~v~~~dF~~al~eikp~~~slk~lv~~~e~ek~ll~~iip~~e~~ 945 (1163)
|+.||..|+..++++..+.+... ... ......+.+...+|+.++.++.|... .+ + ...-+.
T Consensus 411 L~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~--re--------------~-~~e~p~ 473 (489)
T 3hu3_A 411 LAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSAL--RE--------------T-VVEVPQ 473 (489)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHH--HG--------------G-GC----
T ss_pred HHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhh--hc--------------c-cccCCC
Confidence 99999999999998765543221 111 11123455678899888877765321 11 1 112236
Q ss_pred CCcccccCcHHHH
Q 001076 946 VTFDDIGALENVK 958 (1163)
Q Consensus 946 ~tfddI~Gleevk 958 (1163)
++|+||+|.....
T Consensus 474 v~W~dig~~~~~~ 486 (489)
T 3hu3_A 474 VTWEDIGGRSHHH 486 (489)
T ss_dssp -------------
T ss_pred CCHHHcCCCcccc
Confidence 8999999987543
No 92
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.33 E-value=3.4e-11 Score=135.99 Aligned_cols=181 Identities=23% Similarity=0.270 Sum_probs=125.9
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccc
Q 001076 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1025 (1163)
Q Consensus 946 ~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~ 1025 (1163)
.+|++++|++.+++.+...+..... + ..++.+++|+||||+|||+||++||+.++.++...+.+.+..
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~------~---~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~--- 89 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKM------R---GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--- 89 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHH------H---TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS---
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHh------c---CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC---
Confidence 4788999999888888776643110 0 124467999999999999999999999999887766544321
Q ss_pred cchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCc-------cc-------CCCCEE
Q 001076 1026 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TK-------DKERVL 1091 (1163)
Q Consensus 1026 Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~-------~k-------~~~~Vl 1091 (1163)
...+..++.. .....|+||||++.+.. ...+ .++..+.... .. .-.++.
T Consensus 90 ---~~~l~~~~~~--~~~~~v~~iDE~~~l~~-----~~~e-------~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 90 ---QGDMAAILTS--LERGDVLFIDEIHRLNK-----AVEE-------LLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp ---HHHHHHHHHH--CCTTCEEEEETGGGCCH-----HHHH-------HHHHHHHTSCCCC---------------CCCE
T ss_pred ---HHHHHHHHHH--ccCCCEEEEcchhhcCH-----HHHH-------HHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 1223333322 22467999999998841 1111 1121111110 00 113467
Q ss_pred EEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCH
Q 001076 1092 VLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1163)
Q Consensus 1092 VIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySg 1155 (1163)
++++|+.+..|++.+++||...+.+++++.+++.+|++......++. ++..+..||..+.|...
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R 217 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPR 217 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChH
Confidence 78899999999999999998889999999999999999988765543 55668889999888654
No 93
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=99.32 E-value=4.3e-12 Score=125.79 Aligned_cols=87 Identities=22% Similarity=0.294 Sum_probs=70.8
Q ss_pred ceeee-cceeEEccCCccceeecCCCCCccceEEEEeec-------CCcceEEEEEe-cCCceEEEcCeecCCCceEEee
Q 001076 146 HLSMT-GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIEN-------GGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLR 216 (1163)
Q Consensus 146 ~~~i~-~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~-------~g~~~a~le~~-~~~G~v~vNg~~~~k~~~~~L~ 216 (1163)
.+.+. ++.|+|||+..||+.|+|+.+|..||.|..-.. ......+|+|. |+||| ||||+++.+++.+.|+
T Consensus 34 ~~~L~~~~~~~IGR~~~~di~l~~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~Dl~StNGT-~vNg~ri~~~~~~~L~ 112 (130)
T 4h87_A 34 TRSLKGTSYCLFGRLSGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGT-FLNKTRIPPRTYCRVH 112 (130)
T ss_dssp EEECTTCSEEEEESSTTSSEECCCTTSCSSCEEEEEBCCCCCC------CCEEEEECSCSSCE-EETTEECCTTCCEECC
T ss_pred eEEeCCCceEEEcCCcCCCEEeCCCCcchhcEEEEEecccCccceeccCCcceEeeCCCCCce-EECCEECCCCceeECC
Confidence 44554 367999999999999999999999999964211 11123778886 78999 7999999999999999
Q ss_pred CCCEEEEccCCCeeEEee
Q 001076 217 GGDELVFSPSGKHSYIFQ 234 (1163)
Q Consensus 217 ~gDev~f~~~~~~ayifq 234 (1163)
.||+|.|+.+.+ .||||
T Consensus 113 ~GD~I~~G~str-~yvl~ 129 (130)
T 4h87_A 113 VGHVVRFGGSTR-LFILQ 129 (130)
T ss_dssp TTCEEEETTCSE-EEEEE
T ss_pred CCCEEEECCceE-EEEEc
Confidence 999999998877 59987
No 94
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.31 E-value=4.6e-12 Score=145.82 Aligned_cols=85 Identities=21% Similarity=0.262 Sum_probs=61.5
Q ss_pred hHHHHHhcccCCccccccccccccccchhHHHHHHHhhhhhhcccccccccCCCCCCCCceeecCCCCchHHHHHHHHHH
Q 001076 435 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 514 (1163)
Q Consensus 435 ~k~~l~~~i~~~~~~~vsf~~FPYylse~Tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgpagsE~Yqe~LaKAL 514 (1163)
+.+.+.+.++++ .-.++|++ ++=.+..+..|.......+.+.++.. .+....+.|||.||+| .-..+||+|+
T Consensus 97 ~~~~~~~~~~~~-~~~~~~~~--iiG~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~vLL~GppG--tGKT~la~ai 168 (389)
T 3vfd_A 97 LANLIMNEIVDN-GTAVKFDD--IAGQDLAKQALQEIVILPSLRPELFT---GLRAPARGLLLFGPPG--NGKTMLAKAV 168 (389)
T ss_dssp CCTTGGGTTBCC-SCCCCGGG--SCSCHHHHHHHHHHTHHHHHCTTTSC---GGGCCCSEEEEESSTT--SCHHHHHHHH
T ss_pred HHHHHHhhhhcc-CCCCChHH--hCCHHHHHHHHHHHHHHhccCHHHhc---ccCCCCceEEEECCCC--CCHHHHHHHH
Confidence 334445556654 35688998 45578888888888877777765532 2234467899999999 5789999999
Q ss_pred HhhcCCeEEEEec
Q 001076 515 AKHFSARLLIVDS 527 (1163)
Q Consensus 515 A~~f~a~LLilDs 527 (1163)
|+.++.+++.++.
T Consensus 169 a~~~~~~~~~v~~ 181 (389)
T 3vfd_A 169 AAESNATFFNISA 181 (389)
T ss_dssp HHHTTCEEEEECS
T ss_pred HHhhcCcEEEeeH
Confidence 9998877766654
No 95
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.30 E-value=2.7e-12 Score=143.53 Aligned_cols=157 Identities=18% Similarity=0.286 Sum_probs=102.2
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc----
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS---- 1022 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s---- 1022 (1163)
+++|.+..++.+.+.+.... ....+|||+||||||||++|++|++.+ +.+|+.++|+.+..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA------------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC------------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHh------------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 57888888888888775321 223579999999999999999999976 68999999987532
Q ss_pred -ccccchH----H---HHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCc-------ccCC
Q 001076 1023 -KWFGEGE----K---YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDK 1087 (1163)
Q Consensus 1023 -~~~Ge~E----~---~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~-------~k~~ 1087 (1163)
.++|... . .....|..|. .++||||||+.|. .. +...|+..++... ....
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~-----~~-------~q~~Ll~~l~~~~~~~~g~~~~~~ 135 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDIS-----PL-------MQVRLLRAIQEREVQRVGSNQTIS 135 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCC-----HH-------HHHHHHHHHHSSBCCBTTBCCCCB
T ss_pred HHhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCC-----HH-------HHHHHHHHHhcCEeeecCCccccc
Confidence 2222110 0 1123455543 4799999999882 11 2223333333211 1123
Q ss_pred CCEEEEEEeCCC-------CCCCHHHHhccCcEEEecCCCHHHH----HHHHHHHHhh
Q 001076 1088 ERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNR----EKIIRVILAK 1134 (1163)
Q Consensus 1088 ~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~I~~Pd~eeR----~eILk~ll~k 1134 (1163)
.++.||+|||.. ..+.+.+..||. ++.+..|+..+| ..++++++.+
T Consensus 136 ~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~ 192 (304)
T 1ojl_A 136 VDVRLIAATHRDLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADHFLRR 192 (304)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHHHHHH
T ss_pred CCeEEEEecCccHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHHHHHH
Confidence 568999999975 357788888985 666777775554 4466666543
No 96
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.27 E-value=8.5e-11 Score=132.48 Aligned_cols=175 Identities=22% Similarity=0.274 Sum_probs=121.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEeccc
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 1019 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg-----~pfi~Id~se 1019 (1163)
..+|++++|++.+++.|...+.. + +. .++||+||||+|||++|+++|+.+. ..++.++.++
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~----------g---~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 86 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDE----------G---KL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD 86 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHT----------T---CC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc----------C---CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc
Confidence 35788999999999998887742 2 12 2499999999999999999999973 2466777654
Q ss_pred cccccccchHHHHHHHHHHHh------ccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEE
Q 001076 1020 ITSKWFGEGEKYVKAVFSLAS------KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1093 (1163)
Q Consensus 1020 L~s~~~Ge~E~~Ir~lF~~A~------k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVI 1093 (1163)
.. + ...++..+.... ...+.|++|||+|.|. ... .+.|+..++.. ...+.+|
T Consensus 87 ~~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~-----~~~-------~~~L~~~le~~----~~~~~~i 144 (340)
T 1sxj_C 87 DR----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT-----NAA-------QNALRRVIERY----TKNTRFC 144 (340)
T ss_dssp CC----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC-----HHH-------HHHHHHHHHHT----TTTEEEE
T ss_pred cc----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC-----HHH-------HHHHHHHHhcC----CCCeEEE
Confidence 21 1 122333332221 1236899999999883 112 22333333322 2456778
Q ss_pred EEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCC-ChhhHHHHHHHcCCCCHH
Q 001076 1094 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 1156 (1163)
Q Consensus 1094 aTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~-~dvdl~~LA~~TeGySga 1156 (1163)
.+||.+..+.+++++|+ .++.+..++.++..+++..++...++. ++..+..++..+.|--..
T Consensus 145 l~~n~~~~i~~~i~sR~-~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 145 VLANYAHKLTPALLSQC-TRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRR 207 (340)
T ss_dssp EEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHH
T ss_pred EEecCccccchhHHhhc-eeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 88999999999999999 488999999999999999888655432 455678888888775443
No 97
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.26 E-value=2.2e-10 Score=129.41 Aligned_cols=170 Identities=16% Similarity=0.138 Sum_probs=120.1
Q ss_pred CcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---------------------
Q 001076 953 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN--------------------- 1011 (1163)
Q Consensus 953 Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~p--------------------- 1011 (1163)
-+++..+.+...+.. .+.+..+||+||+|+|||++|+++|+.+...
T Consensus 6 w~~~~~~~l~~~i~~-------------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~ 72 (334)
T 1a5t_A 6 WLRPDFEKLVASYQA-------------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGT 72 (334)
T ss_dssp GGHHHHHHHHHHHHT-------------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHc-------------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 356667777766642 2344679999999999999999999998542
Q ss_pred ---EEEEeccccccccccchHHHHHHHHHHHhcc----CCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcc
Q 001076 1012 ---FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT 1084 (1163)
Q Consensus 1012 ---fi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~----~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~ 1084 (1163)
++.++..+- ........++.++..+... ...|++|||+|.|. ....+.|+..++.
T Consensus 73 ~~d~~~~~~~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~------------~~a~naLLk~lEe--- 134 (334)
T 1a5t_A 73 HPDYYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT------------DAAANALLKTLEE--- 134 (334)
T ss_dssp CTTEEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC------------HHHHHHHHHHHTS---
T ss_pred CCCEEEEecccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcC------------HHHHHHHHHHhcC---
Confidence 333332200 0012234567777776543 36899999999883 1234556666654
Q ss_pred cCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHH
Q 001076 1085 KDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLK 1159 (1163)
Q Consensus 1085 k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk 1159 (1163)
.+.++++|.+||.++.+.+++++|+ .++.|++|+.++..++++... ..++..+..++..+.|.-+.-+.
T Consensus 135 -p~~~~~~Il~t~~~~~l~~ti~SRc-~~~~~~~~~~~~~~~~L~~~~----~~~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 135 -PPAETWFFLATREPERLLATLRSRC-RLHYLAPPPEQYAVTWLSREV----TMSQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp -CCTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHC----CCCHHHHHHHHHHTTTCHHHHHH
T ss_pred -CCCCeEEEEEeCChHhCcHHHhhcc-eeeeCCCCCHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 2356888889999999999999999 689999999999999888765 23556678889988886655444
No 98
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.25 E-value=8.5e-12 Score=148.78 Aligned_cols=160 Identities=17% Similarity=0.164 Sum_probs=95.3
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecc-----cccc
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMS-----SITS 1022 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg--~pfi~Id~s-----eL~s 1022 (1163)
.|+|++++++.+...+.. ..+|||+||||||||+||++||+.++ .+|..+.+. ++++
T Consensus 23 ~ivGq~~~i~~l~~al~~----------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G 86 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS----------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 86 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH----------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHC
T ss_pred hhHHHHHHHHHHHHHHhc----------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcC
Confidence 467999998887665531 14899999999999999999999884 456655553 2222
Q ss_pred ccccchHHHHHHHHHHHhcc---CCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCC
Q 001076 1023 KWFGEGEKYVKAVFSLASKI---APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1163)
Q Consensus 1023 ~~~Ge~E~~Ir~lF~~A~k~---~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p 1099 (1163)
.+.+.... -...|..+.+. .++|||||||+.+ ++..+..+..++++....+.|.....+.++ +|+|||..
T Consensus 87 ~~~~~~~~-~~g~~~~~~~g~l~~~~IL~IDEI~r~-----~~~~q~~LL~~lee~~v~i~G~~~~~~~~~-iI~ATN~l 159 (500)
T 3nbx_X 87 PLSIQALK-DEGRYERLTSGYLPEAEIVFLDEIWKA-----GPAILNTLLTAINERQFRNGAHVEKIPMRL-LVAASNEL 159 (500)
T ss_dssp CBC-----------CBCCTTSGGGCSEEEEESGGGC-----CHHHHHHHHHHHHSSEEECSSSEEECCCCE-EEEEESSC
T ss_pred cccHHHHh-hchhHHhhhccCCCcceeeeHHhHhhh-----cHHHHHHHHHHHHHHhccCCCCcCCcchhh-hhhccccC
Confidence 22211110 12233322221 4679999999866 222222222222222212233333333444 56677753
Q ss_pred C---CCCHHHHhccCcEEEecCCCH-HHHHHHHHHHH
Q 001076 1100 F---DLDEAVVRRLPRRLMVNLPDA-PNREKIIRVIL 1132 (1163)
Q Consensus 1100 ~---~Ld~aLlrRFd~vI~I~~Pd~-eeR~eILk~ll 1132 (1163)
. .+.+++++||...+.++.|+. +++..|++...
T Consensus 160 pe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 160 PEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp CCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred CCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhccc
Confidence 2 255799999988899999986 77888887654
No 99
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.25 E-value=3.4e-12 Score=126.91 Aligned_cols=131 Identities=13% Similarity=0.146 Sum_probs=86.1
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchH
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGE 1029 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~Ge~E 1029 (1163)
+++|.+..++.+.+.+.... ....+|||+||||||||++|+++++... +|+.++|..+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~------------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~----- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA------------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM----- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH------------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-----
T ss_pred CceeCCHHHHHHHHHHHHHh------------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-----
Confidence 57788888888888775321 1235799999999999999999999888 99999998865443
Q ss_pred HHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCC-CC----CCH
Q 001076 1030 KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-FD----LDE 1104 (1163)
Q Consensus 1030 ~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p-~~----Ld~ 1104 (1163)
...+|..+. .++|||||||.+- ...+..+ +..++.. ...++.+|+|||.+ .. +.+
T Consensus 67 --~~~~~~~a~---~~~l~lDei~~l~-----~~~q~~L-------l~~l~~~---~~~~~~iI~~tn~~~~~~~~~~~~ 126 (143)
T 3co5_A 67 --PMELLQKAE---GGVLYVGDIAQYS-----RNIQTGI-------TFIIGKA---ERCRVRVIASCSYAAGSDGISCEE 126 (143)
T ss_dssp --HHHHHHHTT---TSEEEEEECTTCC-----HHHHHHH-------HHHHHHH---TTTTCEEEEEEEECTTTC--CHHH
T ss_pred --hhhHHHhCC---CCeEEEeChHHCC-----HHHHHHH-------HHHHHhC---CCCCEEEEEecCCCHHHHHhCccH
Confidence 455666654 4899999999882 2222222 2222211 13567888888754 33 445
Q ss_pred HHHhccCcEEEecCC
Q 001076 1105 AVVRRLPRRLMVNLP 1119 (1163)
Q Consensus 1105 aLlrRFd~vI~I~~P 1119 (1163)
.+..||.. +.+.+|
T Consensus 127 ~L~~rl~~-~~i~lP 140 (143)
T 3co5_A 127 KLAGLFSE-SVVRIP 140 (143)
T ss_dssp HHHHHSSS-EEEEEC
T ss_pred HHHHHhcC-cEEeCC
Confidence 66667633 344444
No 100
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=99.24 E-value=1.9e-11 Score=122.16 Aligned_cols=101 Identities=19% Similarity=0.198 Sum_probs=85.2
Q ss_pred CCccceeccccCCCCceeee-cceeEEccCCccceeecCCC----CCccceEEEEeecCCcceEEEEEe-cCCceEEEcC
Q 001076 131 RIPWARLISQCSQNSHLSMT-GAVFTVGHNRQCDLYLKDPS----ISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNG 204 (1163)
Q Consensus 131 ~~pW~rL~s~~~~~p~~~i~-~~~~t~G~~~~cd~~l~d~~----~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg 204 (1163)
..+|+ |.........+.+. ...++|||+..||+.|.|+. +|..||+|...+ +|. ++|+|. |+||| +|||
T Consensus 7 ~~~w~-l~~~G~~~~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~-~g~--~~l~Dl~S~NGT-~vNg 81 (138)
T 2pie_A 7 GRSWC-LRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNP-EGQ--WTIMDNKSLNGV-WLNR 81 (138)
T ss_dssp CEEEE-EEETTCSSCBEEECTTCCEEEESSSSSSEECCCSSCTTSSCSSCEEEEECT-TSC--EEEEECSCSSCE-EETT
T ss_pred CccEE-EEEeCCCCCEEEecCCCeEEECCCCCCCEEeCCCCcCCCCChhHeEEEEcC-CCc--EEEEECCCCCCe-EECC
Confidence 34896 77777667788887 78899999999999999999 999999998742 444 889998 89999 7999
Q ss_pred eecCCCceEEeeCCCEEEEccC----CCeeEEeeec
Q 001076 205 NVHPKDSQVVLRGGDELVFSPS----GKHSYIFQQL 236 (1163)
Q Consensus 205 ~~~~k~~~~~L~~gDev~f~~~----~~~ayifq~l 236 (1163)
+++.++..+.|+.||+|.|+.. ....|.|+..
T Consensus 82 ~~l~~~~~~~L~~GD~I~lG~~~~~~~~~~f~~~~~ 117 (138)
T 2pie_A 82 ARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVT 117 (138)
T ss_dssp EECCTTCCEECCTTCEEEESCCCTTCSSCSEEEEEE
T ss_pred EEcCCCCcEECCCCCEEEECCCCCCCceEEEEEEec
Confidence 9999999999999999999985 3356777654
No 101
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=99.24 E-value=4.3e-11 Score=123.07 Aligned_cols=101 Identities=25% Similarity=0.296 Sum_probs=85.3
Q ss_pred CCccceeccccCCCCceeeecc-------------eeEEccCCccceeecCC-CCCccceEEEEeecCCcceEEEEEecC
Q 001076 131 RIPWARLISQCSQNSHLSMTGA-------------VFTVGHNRQCDLYLKDP-SISKNLCRLRRIENGGPSGALLEITGG 196 (1163)
Q Consensus 131 ~~pW~rL~s~~~~~p~~~i~~~-------------~~t~G~~~~cd~~l~d~-~~s~~~c~l~~~~~~g~~~a~le~~~~ 196 (1163)
...|++|+-..-..+...+.-. .|+|||+..||+.|+|+ .+|..||+|...+ +|. .+|+|.|+
T Consensus 30 ~~~~~~L~v~~G~~~g~~~~l~~~~v~~~~~~~~~~~~IGR~~~~di~l~d~~~vSr~Ha~I~~~~-~g~--~~l~DlS~ 106 (164)
T 1g3g_A 30 ENIVCRVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGE-DGN--LLLNDIST 106 (164)
T ss_dssp SSCCEEEECSSSSSCCEEECCCHHHHHHCSSSCCEEEEEESSSSSSEECCCCTTTTSSCEEEEECS-TTC--EEEEECCS
T ss_pred CCccEEEEEecCCCCCeEEEeccccccccccccCCcEEECCCCCCCEEeCCcCCcChhHEEEEECC-CCC--EEEEECCC
Confidence 4579999988877776555543 89999999999999998 5999999999742 444 88999999
Q ss_pred CceEEEcCeecCCCceEEeeCCCEEEEccC---CCeeEEeee
Q 001076 197 KGEVEVNGNVHPKDSQVVLRGGDELVFSPS---GKHSYIFQQ 235 (1163)
Q Consensus 197 ~G~v~vNg~~~~k~~~~~L~~gDev~f~~~---~~~ayifq~ 235 (1163)
||| +|||+++.++..+.|+.||+|.|+.. ....|+|..
T Consensus 107 NGT-~vNg~~i~~~~~~~L~~GD~I~iG~~~~~~~~~f~~~~ 147 (164)
T 1g3g_A 107 NGT-WLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIFI 147 (164)
T ss_dssp SCE-EETTEEECTTEEEECCTTCEEEESCSSTTSCEEEEEEE
T ss_pred CCe-EECCEEcCCCCceEcCCCCEEEECCCCCCCcEEEEEEe
Confidence 999 79999999999999999999999987 345788774
No 102
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.24 E-value=1.1e-11 Score=123.42 Aligned_cols=132 Identities=8% Similarity=0.099 Sum_probs=88.8
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccccc
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFG 1026 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~~~G 1026 (1163)
+++|.+...+.+.+.+.... ....+|||+||||||||++|++|++.. +.+|+ ++|..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a------------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~--- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS------------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA--- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT------------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS---
T ss_pred CceeCCHHHHHHHHHHHHHh------------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc---
Confidence 56788888888888775321 123579999999999999999999987 78999 999886554
Q ss_pred chHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCC-------
Q 001076 1027 EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP------- 1099 (1163)
Q Consensus 1027 e~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p------- 1099 (1163)
......|..+. .++|||||||.|- .. ....++..+.. ...++.+|+|||.+
T Consensus 66 ---~~~~~~~~~a~---~g~l~ldei~~l~-----~~-------~q~~Ll~~l~~----~~~~~~~I~~t~~~~~~~~~~ 123 (145)
T 3n70_A 66 ---PQLNDFIALAQ---GGTLVLSHPEHLT-----RE-------QQYHLVQLQSQ----EHRPFRLIGIGDTSLVELAAS 123 (145)
T ss_dssp ---SCHHHHHHHHT---TSCEEEECGGGSC-----HH-------HHHHHHHHHHS----SSCSSCEEEEESSCHHHHHHH
T ss_pred ---hhhhcHHHHcC---CcEEEEcChHHCC-----HH-------HHHHHHHHHhh----cCCCEEEEEECCcCHHHHHHc
Confidence 23445566553 4799999999882 11 12233333322 23567889999874
Q ss_pred CCCCHHHHhccCcEEEecCCC
Q 001076 1100 FDLDEAVVRRLPRRLMVNLPD 1120 (1163)
Q Consensus 1100 ~~Ld~aLlrRFd~vI~I~~Pd 1120 (1163)
..+.+.+..|+. .+.+..|.
T Consensus 124 ~~~~~~L~~rl~-~~~i~lPp 143 (145)
T 3n70_A 124 NHIIAELYYCFA-MTQIACLP 143 (145)
T ss_dssp SCCCHHHHHHHH-HHEEECCC
T ss_pred CCCCHHHHHHhc-CCEEeCCC
Confidence 356777777763 33444443
No 103
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.22 E-value=1.8e-12 Score=152.53 Aligned_cols=98 Identities=17% Similarity=0.255 Sum_probs=69.5
Q ss_pred CeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEE---------eC---CCCCCCHHHHhccC
Q 001076 1044 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA---------TN---RPFDLDEAVVRRLP 1111 (1163)
Q Consensus 1044 PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaT---------TN---~p~~Ld~aLlrRFd 1111 (1163)
|.|+||||+|.|- ....+.|+..++.- ..+++|++| ++ .+..+++.+++||.
T Consensus 296 ~~VliIDEa~~l~------------~~a~~aLlk~lEe~----~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~ 359 (456)
T 2c9o_A 296 PGVLFVDEVHMLD------------IECFTYLHRALESS----IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVM 359 (456)
T ss_dssp ECEEEEESGGGCB------------HHHHHHHHHHTTST----TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEE
T ss_pred ceEEEEechhhcC------------HHHHHHHHHHhhcc----CCCEEEEecCCccccccccccccccccCChhHHhhcc
Confidence 3699999999882 33556666666542 244655565 32 27789999999995
Q ss_pred cEEEecCCCHHHHHHHHHHHHhhCCC-CChhhHHHHHHHc-CCCCHHHH
Q 001076 1112 RRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMA-DGYSGSDL 1158 (1163)
Q Consensus 1112 ~vI~I~~Pd~eeR~eILk~ll~k~~l-~~dvdl~~LA~~T-eGySgaDL 1158 (1163)
. +.+++++.++..++++..+...++ .++..+..|+..+ .|--...+
T Consensus 360 ~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~ 407 (456)
T 2c9o_A 360 I-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSV 407 (456)
T ss_dssp E-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHH
T ss_pred e-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHH
Confidence 4 799999999999999998865544 3556678888887 66433333
No 104
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=99.19 E-value=5.4e-11 Score=118.26 Aligned_cols=102 Identities=18% Similarity=0.220 Sum_probs=83.5
Q ss_pred CCCCccceeccccCCC---CceeeecceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcC
Q 001076 129 GSRIPWARLISQCSQN---SHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNG 204 (1163)
Q Consensus 129 ~~~~pW~rL~s~~~~~---p~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg 204 (1163)
....|||+|.-..... ..+.+....++|||+..||+.|+|+.+|..||+|.....++. .+|+|. |+||| ||||
T Consensus 19 ~~~~p~g~L~v~~g~~~~g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~i~~~~~~~~--~~l~Dl~S~NGT-~vNg 95 (132)
T 3va4_A 19 SHMEPIGQLRLFSGTHGPERDFPLYLGKNVVGRSPDCSVALPFPSISKQHAVIEISAWNKA--PILQDCGSLNGT-QIVK 95 (132)
T ss_dssp -CCCCSEEEEECCBTTBSCEEEEECSEEEEEESSTTSSEECCCTTSCTTCEEEEECSTTSC--CEEEECSCSSCE-EETT
T ss_pred ccCCCcEEEEEEeCCCCCceEEEECCCCEEEccCCCCCEEeCCCCcChhHEEEEEEcCCCE--EEEEECCCCCCe-EECC
Confidence 4456999999876544 367788889999999999999999999999999997644554 678888 77999 7999
Q ss_pred ee--cCCCceEEeeCCCEEEEccCCCeeEEeeec
Q 001076 205 NV--HPKDSQVVLRGGDELVFSPSGKHSYIFQQL 236 (1163)
Q Consensus 205 ~~--~~k~~~~~L~~gDev~f~~~~~~ayifq~l 236 (1163)
++ +.++..+.|+.||+|.|+. ..+.|..+
T Consensus 96 ~~i~l~~~~~~~L~~GD~I~lG~---~~l~f~~~ 126 (132)
T 3va4_A 96 PPRVLPPGVSHRLRDQELILFAD---FPCQYHRL 126 (132)
T ss_dssp TTEEECTTCCEECCTTCEEEETT---EEEEEEEC
T ss_pred EEcccCCCCEEECCCCCEEEECC---EEEEEEEC
Confidence 98 6888999999999999964 45566643
No 105
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.18 E-value=9e-11 Score=126.73 Aligned_cols=73 Identities=22% Similarity=0.314 Sum_probs=47.5
Q ss_pred CccccccccccccccchhHHHHHHHhhhhhhcccc-cccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEE
Q 001076 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNN-FAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 524 (1163)
Q Consensus 446 ~~~~~vsf~~FPYylse~Tk~~L~~~~~~hLk~~~-~~k~~~~l~~~s~rILLsgpagsE~Yqe~LaKALA~~f~a~LLi 524 (1163)
.+...++|+++ +-.+..|..|....- .+++.+ +.+++.. ..+.|||.||+| .-..+||||||+.++++++.
T Consensus 4 ~~~~~~~~~~i--~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~---~~~~vll~G~~G--tGKT~la~~la~~~~~~~~~ 75 (257)
T 1lv7_A 4 EDQIKTTFADV--AGCDEAKEEVAELVE-YLREPSRFQKLGGK---IPKGVLMVGPPG--TGKTLLAKAIAGEAKVPFFT 75 (257)
T ss_dssp ECSSCCCGGGS--CSCHHHHHHTHHHHH-HHHCGGGC-----C---CCCEEEEECCTT--SCHHHHHHHHHHHHTCCEEE
T ss_pred ccCCCCCHHHh--cCcHHHHHHHHHHHH-HHhCHHHHHHcCCC---CCCeEEEECcCC--CCHHHHHHHHHHHcCCCEEE
Confidence 35567888884 556777777766543 244432 2223222 234599999999 56899999999998877655
Q ss_pred Ee
Q 001076 525 VD 526 (1163)
Q Consensus 525 lD 526 (1163)
++
T Consensus 76 i~ 77 (257)
T 1lv7_A 76 IS 77 (257)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 106
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.18 E-value=1e-12 Score=146.23 Aligned_cols=171 Identities=18% Similarity=0.255 Sum_probs=115.5
Q ss_pred eeeeecCCCCCCCCCC-----CCCCCCCCcccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhc
Q 001076 644 IGVRFDRSIPEGNNLG-----GFCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT 718 (1163)
Q Consensus 644 vgV~Fd~~~~~~~~l~-----~~c~~~~~ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La 718 (1163)
-||.|.+|+|+||++- +.+. ..|+.-.+..- .++|.++.+..++.+|+.+.. ..|.||||||||.+..
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~~l--~~~~~g~~~~~~~~~f~~a~~---~~p~il~iDEid~l~~ 122 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPEL--LTMWFGESEANVREIFDKARQ---AAPCVLFFDELDSIAK 122 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHHHH--HHHHHTTCTTHHHHHHHHHHH---TCSEEEEECSTTHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhHHH--HhhhcCchHHHHHHHHHHHHh---cCCeEEEEEChHHHhh
Confidence 3788899999999876 2221 22332111111 256778887888888887766 7899999999999543
Q ss_pred C-----------ChhhHHHHHHHHhcC--CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCcccccc
Q 001076 719 G-----------NNDAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHD 785 (1163)
Q Consensus 719 ~-----------~~~~~~~i~s~L~~L--~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~ 785 (1163)
. ..+....+...|+.+ ..+|+||+++|+++. ||+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~----------------------ld~----------- 169 (301)
T 3cf0_A 123 ARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI----------------------IDP----------- 169 (301)
T ss_dssp HHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGG----------------------SCG-----------
T ss_pred ccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccc----------------------cCh-----------
Confidence 1 122334455555555 348999999996544 343
Q ss_pred ccccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhhhhcCCC-CcccccchhhcccC
Q 001076 786 RSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQT 862 (1163)
Q Consensus 786 r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg 862 (1163)
+++| ||++.+++++|+...|..|++.|.. ..++ .+++++.++..+.+
T Consensus 170 ----------------------------al~r~gRf~~~i~i~~p~~~~r~~il~~~l~--~~~~~~~~~~~~la~~~~g 219 (301)
T 3cf0_A 170 ----------------------------AILRPGRLDQLIYIPLPDEKSRVAILKANLR--KSPVAKDVDLEFLAKMTNG 219 (301)
T ss_dssp ----------------------------GGGSTTSSCEEEECCCCCHHHHHHHHHHHHT--TSCBCSSCCHHHHHHTCSS
T ss_pred ----------------------------HHhcCCccceEEecCCcCHHHHHHHHHHHHc--cCCCCccchHHHHHHHcCC
Confidence 3333 4444555555555556666666543 2233 57789999999999
Q ss_pred CchhhhhhHHhHHhhhhhhhcC
Q 001076 863 LTTEGVEKIVGWALSHHFMHCS 884 (1163)
Q Consensus 863 ~sgadIe~Lv~~Aas~Al~r~~ 884 (1163)
|+|+||+.+|..|+..++.+..
T Consensus 220 ~sg~dl~~l~~~a~~~a~~~~~ 241 (301)
T 3cf0_A 220 FSGADLTEICQRACKLAIRESI 241 (301)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987653
No 107
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.16 E-value=5.9e-11 Score=124.04 Aligned_cols=101 Identities=20% Similarity=0.296 Sum_probs=78.1
Q ss_pred ccceeccccCC--CCceeeecce--eEEccCCccceeecCCCCCccceEEEEee-cCCc----------ceEEEEEecCC
Q 001076 133 PWARLISQCSQ--NSHLSMTGAV--FTVGHNRQCDLYLKDPSISKNLCRLRRIE-NGGP----------SGALLEITGGK 197 (1163)
Q Consensus 133 pW~rL~s~~~~--~p~~~i~~~~--~t~G~~~~cd~~l~d~~~s~~~c~l~~~~-~~g~----------~~a~le~~~~~ 197 (1163)
.|..|.+.... .+.+.+.... |+|||+..||+.|+|+.+|..||.|.... ..|. ...+|+|.|+|
T Consensus 28 ~~l~L~~~~~~~~~~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~DlStN 107 (182)
T 1qu5_A 28 RFLTLKPLPDSIIQESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGTN 107 (182)
T ss_dssp CCEEECCCTTSSSCSCCCBTTCCSSEEESSSTTSSSCCCCTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECCCSSS
T ss_pred cEEEEEeCCCCCcceEEEEcCCCceEEECCCCCCCEEECCCCcChHHeEEEEecCccccccccccccccceEEEEECCcC
Confidence 44444444322 3466777655 99999999999999999999999999763 1121 45899999999
Q ss_pred ceEEEcCeecCCCceEEeeCCCEEEEccC--CCeeEEee
Q 001076 198 GEVEVNGNVHPKDSQVVLRGGDELVFSPS--GKHSYIFQ 234 (1163)
Q Consensus 198 G~v~vNg~~~~k~~~~~L~~gDev~f~~~--~~~ayifq 234 (1163)
|| ||||+++.++..++|+.||+|.|+.. |...++|.
T Consensus 108 GT-~VNg~ri~~~~~~~L~~GD~I~l~~d~~G~~~l~f~ 145 (182)
T 1qu5_A 108 VS-YLNNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFK 145 (182)
T ss_dssp CC-EETTEECCSSEEEECCTTBCCEEEEEGGGTEEEECC
T ss_pred Ce-EECCEEcCCCcceEcCCCCEEEEEEcCCCCEEEEEE
Confidence 99 79999999999999999999999433 44455554
No 108
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.15 E-value=1e-10 Score=127.70 Aligned_cols=71 Identities=25% Similarity=0.196 Sum_probs=52.6
Q ss_pred ccccccccccccchhHHHHHHHhhhhhhcccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001076 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1163)
Q Consensus 449 ~~vsf~~FPYylse~Tk~~L~~~~~~hLk~~~~~-k~~~~l~~~s~rILLsgpagsE~Yqe~LaKALA~~f~a~LLilD 526 (1163)
-+++|++ .+--+..+..|.......+++.+.. +++. ...+.|||.||+| .-..+||||||+.++.+++.++
T Consensus 12 ~~~~~~~--i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~ll~G~~G--tGKT~la~~la~~~~~~~~~v~ 83 (285)
T 3h4m_A 12 PNVRYED--IGGLEKQMQEIREVVELPLKHPELFEKVGI---EPPKGILLYGPPG--TGKTLLAKAVATETNATFIRVV 83 (285)
T ss_dssp CCCCGGG--SCSCHHHHHHHHHHTHHHHHCHHHHHHHCC---CCCSEEEEESSSS--SSHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCHHH--hcCHHHHHHHHHHHHHHHhhCHHHHHhcCC---CCCCeEEEECCCC--CcHHHHHHHHHHHhCCCEEEEe
Confidence 3678888 4567888888888887777776544 3332 2345699999999 5788999999999877665554
No 109
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.13 E-value=5.6e-11 Score=141.67 Aligned_cols=117 Identities=25% Similarity=0.365 Sum_probs=87.1
Q ss_pred CCCeEEEEcchhhhhcC--------ChhhHHHHHHHHhcCC-----CCEEEEEeccccccccccCCCCCceeeccCCchh
Q 001076 703 SSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENLP-----SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQT 769 (1163)
Q Consensus 703 ~~P~IIffddid~~La~--------~~~~~~~i~s~L~~L~-----g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~ 769 (1163)
..|.||||||||.+... +++....+...|..|. ..+|||+++|+++.
T Consensus 122 ~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~-------------------- 181 (499)
T 2dhr_A 122 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI-------------------- 181 (499)
T ss_dssp SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGG--------------------
T ss_pred cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhh--------------------
Confidence 67899999999994321 2333334444444443 36889999996443
Q ss_pred hhccccCCCCccccccccccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhhhhcCC
Q 001076 770 ALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNG 847 (1163)
Q Consensus 770 ~lldp~~pd~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~l~~~~ 847 (1163)
||+ +|+| ||++++++++|++++|.+|+++|.. ...
T Consensus 182 --LD~---------------------------------------aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~ 218 (499)
T 2dhr_A 182 --LDP---------------------------------------ALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKP 218 (499)
T ss_dssp --SCT---------------------------------------TTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSC
T ss_pred --cCc---------------------------------------ccccccccceEEecCCCCHHHHHHHHHHHHh--cCC
Confidence 444 4555 7888888888999999999998854 334
Q ss_pred C-CcccccchhhcccCCchhhhhhHHhHHhhhhhhh
Q 001076 848 L-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 882 (1163)
Q Consensus 848 L-~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al~r 882 (1163)
+ .++++..++..+.||+|+||+.+|..|+.++..+
T Consensus 219 l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~ 254 (499)
T 2dhr_A 219 LAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 254 (499)
T ss_dssp CCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTT
T ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 5 6788999999999999999999999999988753
No 110
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.12 E-value=1.8e-10 Score=111.92 Aligned_cols=93 Identities=22% Similarity=0.269 Sum_probs=76.5
Q ss_pred CCCccceeccccCCC--Cceeeec-ceeEEccC-CccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcC
Q 001076 130 SRIPWARLISQCSQN--SHLSMTG-AVFTVGHN-RQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNG 204 (1163)
Q Consensus 130 ~~~pW~rL~s~~~~~--p~~~i~~-~~~t~G~~-~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg 204 (1163)
...||.+|.-..-.. ..+.+.. ..|+|||. ..||+.|+|+.+|..||+|... ++. ++|+|. +.||| +|||
T Consensus 8 ~~~p~l~L~v~~g~~~g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~--~~~--~~l~Dl~S~nGT-~vng 82 (118)
T 1uht_A 8 MVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESD--SGN--WVIQDLGSSNGT-LLNS 82 (118)
T ss_dssp CCSCEEEEEESSSTTTTCBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEEC--SSS--EEEECCCCSSCC-EESS
T ss_pred CCCCeEEEEEEeCCCCCcEEEECCCCEEEEcCCCCCCCEEeCCCCCchHHeEEEEE--CCE--EEEEECCCCCCe-EECC
Confidence 345788887754222 2556665 68999999 8999999999999999999975 333 899999 68999 7999
Q ss_pred eecCCCceEEeeCCCEEEEccCC
Q 001076 205 NVHPKDSQVVLRGGDELVFSPSG 227 (1163)
Q Consensus 205 ~~~~k~~~~~L~~gDev~f~~~~ 227 (1163)
+++.++..+.|+.||+|.|+...
T Consensus 83 ~~l~~~~~~~L~~gd~i~lG~~~ 105 (118)
T 1uht_A 83 NALDPETSVNLGDGDVIKLGEYT 105 (118)
T ss_dssp SBCCTTCEEECCTTEEEEETTTE
T ss_pred EECCCCCeEEcCCCCEEEECCeE
Confidence 99999999999999999997653
No 111
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.10 E-value=1.8e-11 Score=149.03 Aligned_cols=173 Identities=20% Similarity=0.285 Sum_probs=101.1
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe----ccccccccc
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS----MSSITSKWF 1025 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id----~seL~s~~~ 1025 (1163)
.|.|++.+++.+...+.. ..+..+.. ...+...+|||+||||||||+||+++|+.++..++... +..+.....
T Consensus 296 ~I~G~e~vk~al~~~l~~--g~~~~~~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 296 SIYGHWELKEALALALFG--GVPKVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp TTSCCHHHHHHHTTTTTC--CCCEETTT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred hhcChHHHHHHHHHHHhC--CCcccccC-CCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 577999888777433221 10000000 11222347999999999999999999999976655432 222322211
Q ss_pred cchHH----HHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhc--CCcccCCCCEEEEEEeCCC
Q 001076 1026 GEGEK----YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD--GLRTKDKERVLVLAATNRP 1099 (1163)
Q Consensus 1026 Ge~E~----~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ld--gl~~k~~~~VlVIaTTN~p 1099 (1163)
..... .....+..| ..+||||||||.+ ....+..+..++++....+. |.....+.++.||||||+.
T Consensus 373 ~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l-----~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~ 444 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLA---DGGIAVIDEIDKM-----RDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPK 444 (595)
T ss_dssp SGGGTSSCSEEECHHHHH---SSSEECCTTTTCC-----CSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCT
T ss_pred eccccccccccCCeeEec---CCCcEEeehhhhC-----CHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCc
Confidence 11000 001123333 3489999999987 22223322222221111111 2222335688999999997
Q ss_pred C-------------CCCHHHHhccCc-EEEecCCCHHHHHHHHHHHHhh
Q 001076 1100 F-------------DLDEAVVRRLPR-RLMVNLPDAPNREKIIRVILAK 1134 (1163)
Q Consensus 1100 ~-------------~Ld~aLlrRFd~-vI~I~~Pd~eeR~eILk~ll~k 1134 (1163)
. .|++++++||+. .+..+.|+.+ ...|+++++..
T Consensus 445 ~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 445 FGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp TCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred CCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 6 899999999985 4555777777 88888887764
No 112
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.10 E-value=2.5e-11 Score=143.95 Aligned_cols=170 Identities=21% Similarity=0.292 Sum_probs=120.7
Q ss_pred eeeecCCCCCCCCCCCCC--CC-CCCcccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcCC-
Q 001076 645 GVRFDRSIPEGNNLGGFC--ED-DHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN- 720 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~~~c--~~-~~~ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~~- 720 (1163)
||.+-+|+++||++-..+ .. +..||.-..... ...|.+.....++.+|+.+.. ..|.||||||||.+...+
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~--~~~~~g~~~~~~r~lf~~A~~---~~p~ILfIDEid~l~~~r~ 125 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEANVPFFHISGSDF--VELFVGVGAARVRDLFAQAKA---HAPCIVFIDEIDAVGRHRG 125 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGT--TTCCTTHHHHHHHHHHHHHHH---TCSEEEEEETGGGTCCC--
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHH--HHHHhcccHHHHHHHHHHHHh---cCCCEEEEechhhhhhhcc
Confidence 688888999999876211 11 122443223333 356888777778887777765 789999999999943321
Q ss_pred ----------hhhHHHHHHHHhcC--CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCccccccccc
Q 001076 721 ----------NDAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSK 788 (1163)
Q Consensus 721 ----------~~~~~~i~s~L~~L--~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~ 788 (1163)
.+..+.|...|+.+ ..+|+||+++|+++. |||
T Consensus 126 ~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~----------------------Ld~-------------- 169 (476)
T 2ce7_A 126 AGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDI----------------------LDP-------------- 169 (476)
T ss_dssp -------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGG----------------------SCG--------------
T ss_pred cccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhh----------------------hch--------------
Confidence 12333344444433 348999999996543 343
Q ss_pred cchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhhhhcCCC-CcccccchhhcccCCch
Q 001076 789 ETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTT 865 (1163)
Q Consensus 789 ~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~sg 865 (1163)
+++| ||++++++++|+.++|.+|+++|.. ..++ .++++..++..+.||+|
T Consensus 170 -------------------------allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~--~~~l~~~v~l~~la~~t~G~sg 222 (476)
T 2ce7_A 170 -------------------------ALLRPGRFDKKIVVDPPDMLGRKKILEIHTR--NKPLAEDVNLEIIAKRTPGFVG 222 (476)
T ss_dssp -------------------------GGGSTTSSCEEEECCCCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCH
T ss_pred -------------------------hhcccCcceeEeecCCCCHHHHHHHHHHHHH--hCCCcchhhHHHHHHhcCCCcH
Confidence 5555 7888888888999999999998865 2244 67789999999999999
Q ss_pred hhhhhHHhHHhhhhhhh
Q 001076 866 EGVEKIVGWALSHHFMH 882 (1163)
Q Consensus 866 adIe~Lv~~Aas~Al~r 882 (1163)
+||+.+|..|+..+..+
T Consensus 223 adL~~lv~~Aal~A~~~ 239 (476)
T 2ce7_A 223 ADLENLVNEAALLAARE 239 (476)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999988754
No 113
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.09 E-value=3.7e-10 Score=121.20 Aligned_cols=70 Identities=26% Similarity=0.240 Sum_probs=46.4
Q ss_pred cccccccccccchhHHHHHHHhhhhhhcccc-cccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001076 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNN-FAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1163)
Q Consensus 450 ~vsf~~FPYylse~Tk~~L~~~~~~hLk~~~-~~k~~~~l~~~s~rILLsgpagsE~Yqe~LaKALA~~f~a~LLilDs 527 (1163)
+++|+++ +-.+..|..|...... +++.+ |..++. ...+-|||.||+| .-..+||||||++++.+++.++.
T Consensus 2 ~~~~~~i--~G~~~~~~~l~~~~~~-~~~~~~~~~~g~---~~~~~vll~G~~G--tGKT~la~~la~~~~~~~~~~~~ 72 (262)
T 2qz4_A 2 GVSFKDV--AGMHEAKLEVREFVDY-LKSPERFLQLGA---KVPKGALLLGPPG--CGKTLLAKAVATEAQVPFLAMAG 72 (262)
T ss_dssp CCCTTSS--CSCHHHHHHHHHHHHH-HHCCC------C---CCCCEEEEESCTT--SSHHHHHHHHHHHHTCCEEEEET
T ss_pred CCCHHHh--CCHHHHHHHHHHHHHH-HHCHHHHHHcCC---CCCceEEEECCCC--CCHHHHHHHHHHHhCCCEEEech
Confidence 5778874 4457778877766543 44432 333432 3346799999999 57899999999998777665554
No 114
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.09 E-value=1.1e-09 Score=122.87 Aligned_cols=142 Identities=13% Similarity=0.177 Sum_probs=103.6
Q ss_pred CcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh------CCcEEEEecccccccccc
Q 001076 953 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------GANFINISMSSITSKWFG 1026 (1163)
Q Consensus 953 Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL------g~pfi~Id~seL~s~~~G 1026 (1163)
|++++.+.|...+.. + + .+.+||+||||+|||++|+++|+.+ ...|+.++... . .
T Consensus 1 g~~~~~~~L~~~i~~----------~---~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~--~ 61 (305)
T 2gno_A 1 GAKDQLETLKRIIEK----------S---E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---E--N 61 (305)
T ss_dssp ---CHHHHHHHHHHT----------C---S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---S--C
T ss_pred ChHHHHHHHHHHHHC----------C---C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---C--C
Confidence 566777778777742 1 2 3589999999999999999999874 34677777542 0 1
Q ss_pred chHHHHHHHHHHHhccC----CeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCC
Q 001076 1027 EGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1102 (1163)
Q Consensus 1027 e~E~~Ir~lF~~A~k~~----PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~L 1102 (1163)
..-..++.++..+...+ ..|+||||+|.|. ....+.|+..++. .+..+++|.+|+.+..+
T Consensus 62 ~~id~ir~li~~~~~~p~~~~~kvviIdead~lt------------~~a~naLLk~LEe----p~~~t~fIl~t~~~~kl 125 (305)
T 2gno_A 62 IGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT------------QQAANAFLKALEE----PPEYAVIVLNTRRWHYL 125 (305)
T ss_dssp BCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC------------HHHHHHTHHHHHS----CCTTEEEEEEESCGGGS
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEeccHHHhC------------HHHHHHHHHHHhC----CCCCeEEEEEECChHhC
Confidence 22335777887776543 4699999999883 1234556666654 23567888888889999
Q ss_pred CHHHHhccCcEEEecCCCHHHHHHHHHHHH
Q 001076 1103 DEAVVRRLPRRLMVNLPDAPNREKIIRVIL 1132 (1163)
Q Consensus 1103 d~aLlrRFd~vI~I~~Pd~eeR~eILk~ll 1132 (1163)
.+++++| ++.|.+|+.++..++++..+
T Consensus 126 ~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 126 LPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp CHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred hHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 9999999 79999999999999888875
No 115
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=99.08 E-value=2.9e-10 Score=116.19 Aligned_cols=100 Identities=20% Similarity=0.295 Sum_probs=76.6
Q ss_pred cceeccccC--CCCceeeecce--eEEccCCccceeecCCCCCccceEEEEee-cCCc----------ceEEEEEecCCc
Q 001076 134 WARLISQCS--QNSHLSMTGAV--FTVGHNRQCDLYLKDPSISKNLCRLRRIE-NGGP----------SGALLEITGGKG 198 (1163)
Q Consensus 134 W~rL~s~~~--~~p~~~i~~~~--~t~G~~~~cd~~l~d~~~s~~~c~l~~~~-~~g~----------~~a~le~~~~~G 198 (1163)
|=.|.+... ....+.|.... |+|||+..||+.|+|+.+|..||+|.... ..|. ...+|+|.|+||
T Consensus 5 ~l~L~p~~~~~~~~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~DlStNG 84 (158)
T 1dmz_A 5 FLTLKPLPDSIIQESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGTNV 84 (158)
T ss_dssp CEEEEECTTSSCCCCEEETTSCSCEEEESSTTSSEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEECSTTC
T ss_pred EEEEEeCCCCccceEEEEcCCCceEEECCCCCCCEEeCCCCcChHHeEEEEecCccccccccccccccccEEEEECCcCC
Confidence 444444432 23466676655 99999999999999999999999999754 1121 357999999999
Q ss_pred eEEEcCeecCCCceEEeeCCCEEEEccC--CCeeEEee
Q 001076 199 EVEVNGNVHPKDSQVVLRGGDELVFSPS--GKHSYIFQ 234 (1163)
Q Consensus 199 ~v~vNg~~~~k~~~~~L~~gDev~f~~~--~~~ayifq 234 (1163)
| ||||+++.++..+.|+.||+|.|+.. |+..+.|.
T Consensus 85 T-~VNg~ri~~~~~~~L~~GD~I~l~~d~~G~~~l~f~ 121 (158)
T 1dmz_A 85 S-YLNNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFK 121 (158)
T ss_dssp C-EETTEECCSSEEEECCSSCCEESCCCTTTTCCCCEE
T ss_pred e-EECCEEcCCCceEEcCCCCEEEEeecCCCCEEEEEE
Confidence 9 79999999999999999999999433 33344444
No 116
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=99.06 E-value=2.7e-10 Score=112.19 Aligned_cols=96 Identities=23% Similarity=0.404 Sum_probs=79.0
Q ss_pred CCccceeccccC---CCCceeeecceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcCee
Q 001076 131 RIPWARLISQCS---QNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNV 206 (1163)
Q Consensus 131 ~~pW~rL~s~~~---~~p~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~~ 206 (1163)
..||++|+-... .-..+.+....|+|||+..||+.|.|+.+|..||+|... ++. ++|+|. |.||| +|||+.
T Consensus 9 ~~~~~~L~v~~~~~~~g~~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~i~~~--~~~--~~l~Dl~S~nGt-~vNg~~ 83 (128)
T 1r21_A 9 MWPTRRLVTIKRSGVDGPHFPLSLSTCLFGRGIECDIRIQLPVVSKQHCKIEIH--EQE--AILHNFSSTNPT-QVNGSV 83 (128)
T ss_dssp CCCCEEEEEEEETTEEEEEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEEC--SSC--EEECCCCSSSCC-EETTEE
T ss_pred CCCceEEEEEeCCCCCceEEEECCCCEEECCCCCCCEEECCCCCChhHEEEEEE--CCE--EEEEECCCCCCE-EECCEE
Confidence 347888887542 223577778999999999999999999999999999975 333 889999 57999 799999
Q ss_pred cCCCceEEeeCCCEEEEccCCCeeEEeeec
Q 001076 207 HPKDSQVVLRGGDELVFSPSGKHSYIFQQL 236 (1163)
Q Consensus 207 ~~k~~~~~L~~gDev~f~~~~~~ayifq~l 236 (1163)
+.+ .+.|+.||+|.|+ ...|.|...
T Consensus 84 i~~--~~~L~~Gd~i~iG---~~~~~~~~~ 108 (128)
T 1r21_A 84 IDE--PVRLKHGDVITII---DRSFRYENE 108 (128)
T ss_dssp CSS--CEECCTTEEEECS---SCEEEEEEC
T ss_pred CCC--cEEcCCCCEEEEC---CEEEEEEeC
Confidence 984 7899999999996 457777754
No 117
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=99.06 E-value=3.6e-10 Score=112.08 Aligned_cols=84 Identities=19% Similarity=0.293 Sum_probs=68.2
Q ss_pred ceeeecceeEEccCCccceeecCCCCCccceEEEEee-cCCcceEEEEEe------cCCceEEEcCeecCCCceEEeeCC
Q 001076 146 HLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIE-NGGPSGALLEIT------GGKGEVEVNGNVHPKDSQVVLRGG 218 (1163)
Q Consensus 146 ~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~-~~g~~~a~le~~------~~~G~v~vNg~~~~k~~~~~L~~g 218 (1163)
.+.+....|+|||+..||+.|+|+.+|..||+|.... ..|....+|+|. |+||| ||||+++.+ +.|+.|
T Consensus 24 ~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl~~~~~~S~NGT-~vNg~~i~~---~~L~~G 99 (131)
T 3hx1_A 24 EVLLTETFYTIGRSPRADIRIKSQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSSVNGL-MINGKKVQE---HIIQTG 99 (131)
T ss_dssp EEEECSSEEEEESSTTSSEECCCSSSCTTCEEEEEC------CCEEEEESCTTSCCCSSCE-EETTEEESE---EECCTT
T ss_pred EEEECCCCEEECCCCCCCEEECCCCcChhheEEEEEccCCCceEEEEEECCCCCCCCCCce-EECCEEeEe---EECCCC
Confidence 5677788999999999999999999999999998763 233334889997 89999 799999986 999999
Q ss_pred CEEEEccCCCeeEEeeec
Q 001076 219 DELVFSPSGKHSYIFQQL 236 (1163)
Q Consensus 219 Dev~f~~~~~~ayifq~l 236 (1163)
|+|.|+... ++|..+
T Consensus 100 D~I~iG~~~---~~~~~~ 114 (131)
T 3hx1_A 100 DEIVMGPQV---SVRYEY 114 (131)
T ss_dssp CEEECSTTC---EEEEEE
T ss_pred CEEEECCEE---EEEEEE
Confidence 999997654 455543
No 118
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=99.05 E-value=3.7e-10 Score=115.50 Aligned_cols=88 Identities=22% Similarity=0.293 Sum_probs=75.1
Q ss_pred ceeee-cceeEEccCC---------------ccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcCeecC
Q 001076 146 HLSMT-GAVFTVGHNR---------------QCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHP 208 (1163)
Q Consensus 146 ~~~i~-~~~~t~G~~~---------------~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~~~~ 208 (1163)
.+.+. +..|+|||+. .||+.|+++.+|..||.|.....++....+|+|. |+||| ||||+++.
T Consensus 49 ~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l~~~~VSr~HA~I~~~~~~~~~~~~l~Dl~StNGT-~VNg~ri~ 127 (158)
T 3els_A 49 RYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGT-CLNNVVIP 127 (158)
T ss_dssp EEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCSSCEEEEEEEETTEEEEEEEECSCSSCC-EETTEECC
T ss_pred EEEecCCCceEeccccccccccccccccccccCCEEcCCCCCCcccEEEEEEccCCeeEEEEEeCCCCCcc-EECCEEcC
Confidence 55665 4789999994 5999999999999999998876555556889999 88999 79999999
Q ss_pred CCceEEeeCCCEEEEccCC---CeeEEee
Q 001076 209 KDSQVVLRGGDELVFSPSG---KHSYIFQ 234 (1163)
Q Consensus 209 k~~~~~L~~gDev~f~~~~---~~ayifq 234 (1163)
++..+.|+.||+|.|+.+. ..-++|.
T Consensus 128 ~~~~~~L~~GD~I~~G~s~~~~~~elvF~ 156 (158)
T 3els_A 128 GARYIELRSGDVLTLSEFEEDNDYELIFM 156 (158)
T ss_dssp TTCCEECCTTEEEESSSCGGGCCEEEEEE
T ss_pred CCceEEcCCCCEEEECCCCCCCCEEEEEE
Confidence 9999999999999999875 4666665
No 119
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=99.05 E-value=6.8e-10 Score=104.73 Aligned_cols=74 Identities=20% Similarity=0.272 Sum_probs=64.4
Q ss_pred CCceeeecceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcCeecCCCceEEeeCCCEEE
Q 001076 144 NSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELV 222 (1163)
Q Consensus 144 ~p~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~~~~k~~~~~L~~gDev~ 222 (1163)
-..+.+....++|||+..||+.|+|+.+|..||+|... ++. .+|+|. |.||| +|||+++. .+.|+.||+|.
T Consensus 15 g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~--~~~--~~l~Dl~S~nGt-~vng~~i~---~~~L~~gd~i~ 86 (100)
T 3po8_A 15 GRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWD--GQV--ALLADLNSTNGT-TVNNAPVQ---EWQLADGDVIR 86 (100)
T ss_dssp CCEEECCSEEEEEESSTTCSEECCCTTSCSSCEEEEEC--SSC--EEEEECSCSSCC-EETTEECS---EEECCTTCEEE
T ss_pred CcEEEECCCCEEEeCCCCCCEECCCCCcChhhCEEEEe--CCE--EEEEECCCCCCE-EECCEECc---eEECCCCCEEE
Confidence 34567778889999999999999999999999999974 333 799999 67999 79999997 68999999999
Q ss_pred Ecc
Q 001076 223 FSP 225 (1163)
Q Consensus 223 f~~ 225 (1163)
|+.
T Consensus 87 iG~ 89 (100)
T 3po8_A 87 LGH 89 (100)
T ss_dssp ETT
T ss_pred ECC
Confidence 975
No 120
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=99.03 E-value=1.2e-09 Score=105.75 Aligned_cols=84 Identities=21% Similarity=0.316 Sum_probs=70.4
Q ss_pred CCCceeeecceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcCeecCCCceEEeeCCCEE
Q 001076 143 QNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDEL 221 (1163)
Q Consensus 143 ~~p~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~~~~k~~~~~L~~gDev 221 (1163)
.-..+.+....++|||+..||+.|+|+.+|..||+|... ++. ++|+|. |.||| +|||+.+. .+.|+.||+|
T Consensus 22 ~g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~--~~~--~~l~Dl~S~nGt-~vng~~i~---~~~L~~gd~i 93 (115)
T 2xt9_B 22 AGSRFLLDQPTTSAGRHPDSDIFLDDVTVSRRHAEFRLE--GGE--FQVVDVGSLNGT-YVNREPVD---SAVLANGDEV 93 (115)
T ss_dssp TTCEEEECSSEEEEESSTTSSEECCSTTSCSSCEEEEEE--TTE--EEEEECSCSSCE-EETTEECS---EEEECTTCEE
T ss_pred CCeEEEECCCCEEECCCCCCCEEeCCcccChhheEEEEE--CCE--EEEEECCCCCCe-EECCEEcc---eEECCCCCEE
Confidence 345677788899999999999999999999999999975 343 899999 78999 79999997 6899999999
Q ss_pred EEccCCCeeEEeeecC
Q 001076 222 VFSPSGKHSYIFQQLS 237 (1163)
Q Consensus 222 ~f~~~~~~ayifq~l~ 237 (1163)
.|+. ..+.|+..+
T Consensus 94 ~iG~---~~l~~~~~~ 106 (115)
T 2xt9_B 94 QIGK---FRLVFLTGP 106 (115)
T ss_dssp EETT---EEEEEEC--
T ss_pred EECC---EEEEEEeCC
Confidence 9964 567776543
No 121
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=99.02 E-value=3.7e-10 Score=113.77 Aligned_cols=99 Identities=18% Similarity=0.190 Sum_probs=79.0
Q ss_pred CccceeccccCCCCceeee-cceeEEccCCccceeecCCC----CCccceEEEEeecCCcceEEEEEe-cCCceEEEcCe
Q 001076 132 IPWARLISQCSQNSHLSMT-GAVFTVGHNRQCDLYLKDPS----ISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGN 205 (1163)
Q Consensus 132 ~pW~rL~s~~~~~p~~~i~-~~~~t~G~~~~cd~~l~d~~----~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~ 205 (1163)
..|+-+ ........+.+. ...|+|||+..||+.|+|+. +|..||+|...+ +|. .+|+|. |+||| ||||+
T Consensus 16 ~~w~L~-~~G~~~~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~-~g~--~~l~Dl~S~NGT-~vNg~ 90 (145)
T 2csw_A 16 RSWCLR-RVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNP-EGQ--WTIMDNKSLNGV-WLNRA 90 (145)
T ss_dssp EEEEEC-CTTCSCCBEECCTTCCEEEESSTTSSEECCCSSCGGGSCTTCEEEEECT-TSC--EEEEBSSCSSCE-EESSC
T ss_pred ccEEEE-EeCCCCCeEEeCCCCcEEECCCCCCCEEECCCCcCCCCChhHeEEEEcC-CCe--EEEEECCCCCCe-EECCE
Confidence 378844 444455566664 57899999999999999999 999999999742 344 789995 88999 79999
Q ss_pred ecCCCceEEeeCCCEEEEccC----CCeeEEeee
Q 001076 206 VHPKDSQVVLRGGDELVFSPS----GKHSYIFQQ 235 (1163)
Q Consensus 206 ~~~k~~~~~L~~gDev~f~~~----~~~ayifq~ 235 (1163)
++.++..+.|++||+|.|+.. ....|.|+.
T Consensus 91 ~i~~~~~~~L~~GD~I~iG~~~~~g~~~~f~~~~ 124 (145)
T 2csw_A 91 RLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEV 124 (145)
T ss_dssp BCCBTCCEECCSSCCEEESCCCTTCSSCSCCCCE
T ss_pred ECCCCccEECCCCCEEEECCCCCCCceEEEEEEe
Confidence 999999999999999999985 224455543
No 122
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=99.00 E-value=2.4e-10 Score=114.36 Aligned_cols=85 Identities=15% Similarity=0.185 Sum_probs=71.2
Q ss_pred ceeeec-ceeEEccCCc-cceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcCeecCCCceEEeeCCCEEE
Q 001076 146 HLSMTG-AVFTVGHNRQ-CDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELV 222 (1163)
Q Consensus 146 ~~~i~~-~~~t~G~~~~-cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~~~~k~~~~~L~~gDev~ 222 (1163)
.+.+.. ..|+|||+.. ||+.|.|+.+|..||+|.....++. .+|+|. |+||| ||||+++.++..+.|+.||+|.
T Consensus 48 ~~~l~~~~~~~IGR~~~~~di~l~d~~VSr~Ha~i~~~~~~~~--~~l~Dl~S~NGT-~vNg~~l~~~~~~~L~~gd~i~ 124 (140)
T 2jpe_A 48 KLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKR--VFLIDLNSTHGT-FLGHIRLEPHKPQQIPIDSTVS 124 (140)
T ss_dssp EECCSSCSBCCBSSCTTTSSSCCCCSSSCTTSBEEEEBSSSCC--EEEECCSCSSCE-ESSSCEECSSSCCEECTTCCBB
T ss_pred EEEeCCCCeEEecCCCccCCEEeCCCCcChhheEEEEECCCCc--EEEEECCCCCCe-EECCEECCCCccEECCCCCEEE
Confidence 455555 3599999998 9999999999999999997643344 789997 88999 7999999999999999999999
Q ss_pred EccCCCeeEEee
Q 001076 223 FSPSGKHSYIFQ 234 (1163)
Q Consensus 223 f~~~~~~ayifq 234 (1163)
|+.... .|+|+
T Consensus 125 ~G~~~~-~f~~~ 135 (140)
T 2jpe_A 125 FGASTR-AYTLR 135 (140)
T ss_dssp CSSCCC-CBCCB
T ss_pred ECCceE-EEEEe
Confidence 987654 36554
No 123
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.99 E-value=6.7e-09 Score=122.03 Aligned_cols=85 Identities=25% Similarity=0.445 Sum_probs=61.1
Q ss_pred eEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCccc------CCCCEEEEEEe----CCCCCCCHHHHhccCcEE
Q 001076 1045 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------DKERVLVLAAT----NRPFDLDEAVVRRLPRRL 1114 (1163)
Q Consensus 1045 sILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k------~~~~VlVIaTT----N~p~~Ld~aLlrRFd~vI 1114 (1163)
+|||+||||.+.....+....-...-+.+.||..+++.... +..+|++|+|. +.+.++-|+|+.||+.++
T Consensus 252 ~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i 331 (444)
T 1g41_A 252 GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRV 331 (444)
T ss_dssp CEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEE
T ss_pred CeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceee
Confidence 69999999999754322111122223566788888774321 34689999997 244556689999999999
Q ss_pred EecCCCHHHHHHHHH
Q 001076 1115 MVNLPDAPNREKIIR 1129 (1163)
Q Consensus 1115 ~I~~Pd~eeR~eILk 1129 (1163)
.++.++.++..+|+.
T Consensus 332 ~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 332 ELTALSAADFERILT 346 (444)
T ss_dssp ECCCCCHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHH
Confidence 999999999999993
No 124
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=98.98 E-value=1.9e-09 Score=108.54 Aligned_cols=81 Identities=20% Similarity=0.294 Sum_probs=69.3
Q ss_pred CceeeecceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcCeecCCCceEEeeCCCEEEE
Q 001076 145 SHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELVF 223 (1163)
Q Consensus 145 p~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~~~~k~~~~~L~~gDev~f 223 (1163)
..+.+....++|||+..||+.|+|+.+|..||+|... ++. ++|+|. |.||| ||||+++. .+.|+.||+|.|
T Consensus 59 ~~~~L~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~--~~~--~~l~DlgS~NGT-~VNg~~i~---~~~L~~GD~I~i 130 (143)
T 2kb3_A 59 ARFLLDQPTTTAGRHPESDIFLDDVTVSRRHAEFRIN--EGE--FEVVDVGSLNGT-YVNREPRN---AQVMQTGDEIQI 130 (143)
T ss_dssp CEEEECSSEEEESSCTTCSBCCCCSSCCSSSEEEEEE--TTE--EEEEESCCSSCC-EETTEECS---EEECCTTEEEEE
T ss_pred eEEEeCCCCeeccCCCCCCEEeCCCCcChhhEEEEEE--CCE--EEEEECCCcCCe-EECCEEcc---eEECCCCCEEEE
Confidence 4566777899999999999999999999999999984 443 889999 68999 79999997 689999999999
Q ss_pred ccCCCeeEEeeec
Q 001076 224 SPSGKHSYIFQQL 236 (1163)
Q Consensus 224 ~~~~~~ayifq~l 236 (1163)
+. ..+.|+..
T Consensus 131 G~---~~l~f~~~ 140 (143)
T 2kb3_A 131 GK---FRLVFLAG 140 (143)
T ss_dssp TT---EEEEEEEC
T ss_pred CC---EEEEEEeC
Confidence 64 56777653
No 125
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=98.96 E-value=1e-09 Score=109.69 Aligned_cols=79 Identities=19% Similarity=0.200 Sum_probs=67.8
Q ss_pred eeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcCeecCC--------CceEEeeCCCEEEE
Q 001076 153 VFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPK--------DSQVVLRGGDELVF 223 (1163)
Q Consensus 153 ~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~~~~k--------~~~~~L~~gDev~f 223 (1163)
.|+|||+..||+.|+|+.+|..||+|.....++. .+|+|. |+||| ||||+.+.+ +..+.|+.||+|.|
T Consensus 33 ~~~IGR~~~~di~l~d~~VSr~Ha~i~~~~~~~~--~~l~DlgS~NGT-~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~i 109 (139)
T 1mzk_A 33 PVKLGRVSPSDLALKDSEVSGKHAQITWNSTKFK--WELVDMGSLNGT-LVNSHSISHPDLGSRKWGNPVELASDDIITL 109 (139)
T ss_dssp SEEEESSSSCSEECCCTTSSSEEEEEEEETTTTE--EEEEETTCSSCC-EETTEESSCCCTTTCCCCCCEECCTTEEEEC
T ss_pred eEEeeCCCCCCEEeCCCCCChHHcEEEEECCCCE--EEEEECCCCCCE-EECCEECcCcccccccCCceEECCCCCEEEE
Confidence 7999999999999999999999999997644333 899999 68999 799999995 78999999999999
Q ss_pred ccCCCeeEEeeecC
Q 001076 224 SPSGKHSYIFQQLS 237 (1163)
Q Consensus 224 ~~~~~~ayifq~l~ 237 (1163)
+.. .++|..+.
T Consensus 110 G~~---~~~~~~~~ 120 (139)
T 1mzk_A 110 GTT---TKVYVRIS 120 (139)
T ss_dssp SSS---CEEEEEEE
T ss_pred CCE---EEEEEEcC
Confidence 654 56666554
No 126
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.96 E-value=8.6e-10 Score=146.10 Aligned_cols=153 Identities=20% Similarity=0.235 Sum_probs=106.8
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCC----------hhhhhc------CCC---------CCCCce--EEEEcCCCC
Q 001076 943 DIGVTFDDIGALENVKDTLKELVMLPLQR----------PELFCK------GQL---------TKPCKG--ILLFGPPGT 995 (1163)
Q Consensus 943 e~~~tfddI~Gleevk~~L~e~V~lpl~~----------pelf~k------~~l---------~~p~kg--VLL~GPPGT 995 (1163)
+..++|++++|+++.++.+.+.+.+++.+ ++.|.. .++ .-++++ +||||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 44578999999999999999999998843 455654 111 113345 999999999
Q ss_pred hHHHHHHHHHHHh---CCcEEEEeccccc------------cccccc----hHHHHHHHHHHHhccCCeEEEEccccccc
Q 001076 996 GKTMLAKAVATEA---GANFINISMSSIT------------SKWFGE----GEKYVKAVFSLASKIAPSVVFVDEVDSML 1056 (1163)
Q Consensus 996 GKT~LArALA~eL---g~pfi~Id~seL~------------s~~~Ge----~E~~Ir~lF~~A~k~~PsILfIDEID~L~ 1056 (1163)
|||+||+++|.+. |-+.+.++..+.. ++|+++ .|+.++.+|..|+...|++||+|+|+.|+
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999999877 5666666665533 667777 89999999999999999999999999998
Q ss_pred cCCC-----CcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCC
Q 001076 1057 GRRE-----NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1098 (1163)
Q Consensus 1057 g~r~-----s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~ 1098 (1163)
+.++ .........+++++++..++++... .+|+|| +||+
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~--~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ--SNTLLI-FINQ 1217 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHH--TTCEEE-EEEC
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhcc--CCeEEE-Eecc
Confidence 7632 1111244556788888888876543 567777 5554
No 127
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.94 E-value=1.1e-10 Score=126.53 Aligned_cols=71 Identities=24% Similarity=0.345 Sum_probs=47.5
Q ss_pred cCCccccccccccccccchhHHHHHHHhhhhhhcccc-cccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeE
Q 001076 444 LGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNN-FAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 522 (1163)
Q Consensus 444 ~~~~~~~vsf~~FPYylse~Tk~~L~~~~~~hLk~~~-~~k~~~~l~~~s~rILLsgpagsE~Yqe~LaKALA~~f~a~L 522 (1163)
++.+...++|+++ +-.+..+..|..... .+++.+ +.+++... .+.|||.||+| .-..+||||||+.++.++
T Consensus 1 i~~~~~~~~~~~i--~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~---~~~vll~G~~G--tGKT~la~~la~~~~~~~ 72 (268)
T 2r62_A 1 INAEKPNVRFKDM--AGNEEAKEEVVEIVD-FLKYPERYANLGAKI---PKGVLLVGPPG--TGKTLLAKAVAGEAHVPF 72 (268)
T ss_dssp CCCCCCCCCSTTS--SSCTTTHHHHHHHHH-HHHCHHHHHHHSCCC---CSCCCCBCSSC--SSHHHHHHHHHHHHTCCC
T ss_pred CCccCCCCCHHHh--CCcHHHHHHHHHHHH-HHHChHHHHHCCCCC---CceEEEECCCC--CcHHHHHHHHHHHhCCCE
Confidence 3456778899984 445677777776543 355443 22333322 34499999999 578999999999886643
No 128
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=98.94 E-value=3.8e-09 Score=108.45 Aligned_cols=82 Identities=21% Similarity=0.288 Sum_probs=69.4
Q ss_pred CceeeecceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcCeecCCCceEEeeCCCEEEE
Q 001076 145 SHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELVF 223 (1163)
Q Consensus 145 p~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~~~~k~~~~~L~~gDev~f 223 (1163)
..+.+....++|||+..||+.|+|+.+|..||+|... ++. ++|+|. |.||| ||||+++. .+.|+.||+|.|
T Consensus 68 ~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~--~~~--~~l~DlgS~NGT-~VNg~~i~---~~~L~~GD~I~i 139 (162)
T 2kfu_A 68 SRFLLDQAITSAGRHPDSDIFLDDVTVSRRHAEFRLE--NNE--FNVVDVGSLNGT-YVNREPVD---SAVLANGDEVQI 139 (162)
T ss_dssp CEEETTSSEEEEESCSSSSEESTTTSSSSCSEEEEEE--TTE--EEEECCCCSSCE-EETTBCCS---EEECCSSCEEEE
T ss_pred eEEEECCCCEEECCCCCCCEEECCCCcChhhEEEEEE--CCE--EEEEECCCCCCe-EECCEEcc---eEECCCCCEEEE
Confidence 3566677899999999999999999999999999985 443 899999 68999 79999997 589999999999
Q ss_pred ccCCCeeEEeeecC
Q 001076 224 SPSGKHSYIFQQLS 237 (1163)
Q Consensus 224 ~~~~~~ayifq~l~ 237 (1163)
+. ..++|..-+
T Consensus 140 G~---~~l~f~~~~ 150 (162)
T 2kfu_A 140 GK---FRLVFLTGP 150 (162)
T ss_dssp TT---EEEEEECSC
T ss_pred CC---EEEEEEeCC
Confidence 64 567776433
No 129
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.92 E-value=9.8e-09 Score=117.01 Aligned_cols=188 Identities=15% Similarity=0.125 Sum_probs=117.4
Q ss_pred ccccCcHHHHHHHHHHH-HcccCChhhhhcCCCCCCCceEEE--EcCCCChHHHHHHHHHHHh---------CCcEEEEe
Q 001076 949 DDIGALENVKDTLKELV-MLPLQRPELFCKGQLTKPCKGILL--FGPPGTGKTMLAKAVATEA---------GANFINIS 1016 (1163)
Q Consensus 949 ddI~Gleevk~~L~e~V-~lpl~~pelf~k~~l~~p~kgVLL--~GPPGTGKT~LArALA~eL---------g~pfi~Id 1016 (1163)
++++|.++..+.|.+.+ ..... + ....+..++| +||+|+|||+|++++++.+ ++.++.++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~-------~-~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLS-------G-AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHT-------S-SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCChHHHHHHHHHHHhHHHhc-------C-CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 57889999988888877 43211 1 0023357899 9999999999999999876 56778888
Q ss_pred cccccc------cc---c-------cc-hHHHHHHHHHHHh-ccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHH
Q 001076 1017 MSSITS------KW---F-------GE-GEKYVKAVFSLAS-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1078 (1163)
Q Consensus 1017 ~seL~s------~~---~-------Ge-~E~~Ir~lF~~A~-k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~ 1078 (1163)
+..... .. + +. .......+..... ...|.||+|||++.+..... ...+.+ ..++..
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--~~~~~l----~~l~~~ 167 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--IAAEDL----YTLLRV 167 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--SCHHHH----HHHHTH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--cchHHH----HHHHHH
Confidence 743110 00 0 11 1122233332222 24578999999998853210 012222 222222
Q ss_pred hcCCcccCC--CCEEEEEEeCCCC---CCC---HHHHhccCcEEEecCCCHHHHHHHHHHHHhhC---CCCChhhHHHHH
Q 001076 1079 WDGLRTKDK--ERVLVLAATNRPF---DLD---EAVVRRLPRRLMVNLPDAPNREKIIRVILAKE---ELASDVDLEGIA 1147 (1163)
Q Consensus 1079 Ldgl~~k~~--~~VlVIaTTN~p~---~Ld---~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~---~l~~dvdl~~LA 1147 (1163)
+.... ... .++.||++++.+. .++ +.+.++|...+.+++++.++..+|++..+... ...++..+..++
T Consensus 168 ~~~~~-~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~ 246 (412)
T 1w5s_A 168 HEEIP-SRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELIS 246 (412)
T ss_dssp HHHSC-CTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHH
T ss_pred HHhcc-cCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHH
Confidence 22221 012 5788998887654 233 55667887779999999999999998876532 223556688899
Q ss_pred HHcC
Q 001076 1148 NMAD 1151 (1163)
Q Consensus 1148 ~~Te 1151 (1163)
..+.
T Consensus 247 ~~~~ 250 (412)
T 1w5s_A 247 DVYG 250 (412)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 9998
No 130
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=98.91 E-value=2.6e-09 Score=113.01 Aligned_cols=81 Identities=21% Similarity=0.283 Sum_probs=70.2
Q ss_pred ceeee-cceeEEccCC---------------ccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcCeecC
Q 001076 146 HLSMT-GAVFTVGHNR---------------QCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHP 208 (1163)
Q Consensus 146 ~~~i~-~~~~t~G~~~---------------~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~~~~ 208 (1163)
.+.|. .+.|+|||+. .||+.|+++.+|..||.|.....++....+|+|. |+||| ||||++|.
T Consensus 96 ~~~L~~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~~~~~~~~l~DLgStNGT-fVNG~rI~ 174 (205)
T 3elv_A 96 RYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGT-CLNNVVIP 174 (205)
T ss_dssp EEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEETTEEEEEEEECSCSSCC-EETTEECC
T ss_pred EEEecCCCceeecccccccccccccccccCccceEEeCCCCCCcccEEEEEecCCCceeEEEEeCCCCCCC-eECCEECC
Confidence 56664 5899999984 4999999999999999998665555555788997 88999 79999999
Q ss_pred CCceEEeeCCCEEEEccCC
Q 001076 209 KDSQVVLRGGDELVFSPSG 227 (1163)
Q Consensus 209 k~~~~~L~~gDev~f~~~~ 227 (1163)
++..+.|+.||+|.|+.+.
T Consensus 175 ~~~~~~L~~GD~I~fG~s~ 193 (205)
T 3elv_A 175 GARYIELRSGDVLTLSEFE 193 (205)
T ss_dssp BTSCEECCTTCEEESSSSG
T ss_pred CCceeECCCCCEEEECCCC
Confidence 9999999999999999875
No 131
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=98.89 E-value=5.2e-09 Score=99.77 Aligned_cols=81 Identities=19% Similarity=0.299 Sum_probs=66.5
Q ss_pred ceeeec-ceeEEccCC-ccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcCeecCCCceEEeeCCCEEE
Q 001076 146 HLSMTG-AVFTVGHNR-QCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELV 222 (1163)
Q Consensus 146 ~~~i~~-~~~t~G~~~-~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~~~~k~~~~~L~~gDev~ 222 (1163)
.+.+.. ..|+|||+. .||+.|.|+.+|..||+|.... +|. .+|+|. |+||| +|||+++.+ .+.|+.||+|.
T Consensus 18 ~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~-~~~--~~l~Dl~S~nGt-~vng~~i~~--~~~L~~Gd~i~ 91 (106)
T 3gqs_A 18 EFHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIIIGN-DNS--VLIEDLGSKNGV-IVEGRKIEH--QSTLSANQVVA 91 (106)
T ss_dssp EEEECTTCEEEEESCTTTCSEECCCTTSCSSCEEEEECT-TSC--EEEEECSCSSCC-EETTEECSS--EEECCTTCCEE
T ss_pred EEEECCCCEEEEeECCCcCCEEeCCCCcchhhcEEEECC-CCc--EEEEECcCCCCe-EECCEECCC--CeECCCCCEEE
Confidence 455665 469999999 7999999999999999999752 233 789999 77899 799999987 67999999999
Q ss_pred EccCCCeeEEeee
Q 001076 223 FSPSGKHSYIFQQ 235 (1163)
Q Consensus 223 f~~~~~~ayifq~ 235 (1163)
|+. ..+.|..
T Consensus 92 ~G~---~~~~~~~ 101 (106)
T 3gqs_A 92 LGT---TLFLLVD 101 (106)
T ss_dssp ETT---EEEEEEE
T ss_pred ECC---EEEEEEc
Confidence 964 4566653
No 132
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=98.87 E-value=6.1e-09 Score=106.04 Aligned_cols=95 Identities=23% Similarity=0.390 Sum_probs=74.1
Q ss_pred eecccc--CCCCceeee---cceeEEccCC---ccceeecCCCCCccceEEEEeecCCc-ceEEEEEecCCceEEEcCee
Q 001076 136 RLISQC--SQNSHLSMT---GAVFTVGHNR---QCDLYLKDPSISKNLCRLRRIENGGP-SGALLEITGGKGEVEVNGNV 206 (1163)
Q Consensus 136 rL~s~~--~~~p~~~i~---~~~~t~G~~~---~cd~~l~d~~~s~~~c~l~~~~~~g~-~~a~le~~~~~G~v~vNg~~ 206 (1163)
-|+.++ ++-..+-+| ....+|||.. .||+.|.++.||..||.|.....++. .+++++..++||| ||||+.
T Consensus 40 hLvnLn~Dp~ls~~lvy~L~~g~t~IGR~~~~~~~DI~L~~~~Vs~~H~~i~~~~~~~~~~~~~~d~~S~ngt-~VNG~~ 118 (154)
T 4ejq_A 40 HLVNLNEDPLMSECLLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADT-YVNGKK 118 (154)
T ss_dssp EEEECCCCTTCSSEEEEECCSEEEEEECSSCSSCCSEECCCTTCCSEEEEEEEECTTSSSCEEEEEECTTCCE-EETTEE
T ss_pred eEEEecCCcccCceEEEEeCCCCEEEcCCCCCCCCCEEECCCCcccccEEEEEecCCCceeEEEEecCCCCce-EECCEE
Confidence 455554 233344444 5789999975 79999999999999999998755443 4677888899999 799999
Q ss_pred cCCCceEEeeCCCEEEEccCCCeeEEeee
Q 001076 207 HPKDSQVVLRGGDELVFSPSGKHSYIFQQ 235 (1163)
Q Consensus 207 ~~k~~~~~L~~gDev~f~~~~~~ayifq~ 235 (1163)
|.+ .+.|++||+|.|+. .|.|.|.+
T Consensus 119 i~~--~~~L~~GD~I~~G~--~~~Frf~~ 143 (154)
T 4ejq_A 119 VTE--PSILRSGNRIIMGK--SHVFRFNH 143 (154)
T ss_dssp CCS--CEECCTTCEEEETT--TEEEEEEC
T ss_pred cCC--ceECCCCCEEEECC--cEEEEEcC
Confidence 954 68999999999973 46788875
No 133
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=98.86 E-value=6.2e-09 Score=106.25 Aligned_cols=72 Identities=19% Similarity=0.244 Sum_probs=63.3
Q ss_pred ceeeecceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcCeecCCCceEEeeCCCEEEEc
Q 001076 146 HLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELVFS 224 (1163)
Q Consensus 146 ~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~~~~k~~~~~L~~gDev~f~ 224 (1163)
.+.|....++|||+..||+.|+|+.+|..||+|.... +. ++|+|. |+||| +|||+++. .+.|+.||+|.|+
T Consensus 79 ~~~L~~~~~~IGR~~~~dI~L~d~~VSr~HA~I~~~~--~~--~~l~DlgStNGT-~VNG~~i~---~~~L~~GD~I~lG 150 (157)
T 3oun_A 79 TYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWDG--QV--ALLADLNSTNGT-TVNNAPVQ---EWQLADGDVIRLG 150 (157)
T ss_dssp EEECCSEEEEEESSTTCSEECCCTTSCTTCEEEEECS--SC--EEEEECSCSSCC-EETTEECS---EEECCTTCEEEET
T ss_pred EEEECCCcEEEEeCCCCCEEeCCCCcChhHEEEEEEC--CE--EEEEECCCCCCe-EECCEECc---eEECCCCCEEEEC
Confidence 5667778899999999999999999999999999743 33 889999 67999 79999996 6899999999996
Q ss_pred c
Q 001076 225 P 225 (1163)
Q Consensus 225 ~ 225 (1163)
.
T Consensus 151 ~ 151 (157)
T 3oun_A 151 H 151 (157)
T ss_dssp T
T ss_pred C
Confidence 4
No 134
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=98.84 E-value=1.1e-08 Score=99.67 Aligned_cols=81 Identities=22% Similarity=0.339 Sum_probs=67.6
Q ss_pred eeeecceeEEcc--CCccceeecCCCCCccceEEEEeecCCcceEEEEEec-CCceEEEcCeecCCCceEEeeCCCEEEE
Q 001076 147 LSMTGAVFTVGH--NRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVHPKDSQVVLRGGDELVF 223 (1163)
Q Consensus 147 ~~i~~~~~t~G~--~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~~-~~G~v~vNg~~~~k~~~~~L~~gDev~f 223 (1163)
..+....++||| +..||+.|.++.+|..||.|... ++. ++|++.+ +||| ||||+++.+ .+.|+.||+|.|
T Consensus 31 ~~L~~~~~~IGr~r~~~~di~l~~~~vSr~Ha~i~~~--~~~--~~l~dl~S~ngt-~vNg~~i~~--~~~L~~GD~I~i 103 (120)
T 1wln_A 31 YRLQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNM--DGV--VTVTPRSMDAET-YVDGQRISE--TTMLQSGMRLQF 103 (120)
T ss_dssp EECCSEEEECSSSCCSTTCCCCCCTTCCSSCEEEEES--SSC--EEEEESCSSSCE-EETSCBCSS--CEEECTTCEEEE
T ss_pred EEECCCCEEECCCCCCCCcEEECCCCCchhheEEEEc--CCE--EEEEECCCCCCE-EECCEEcCC--CEECCCCCEEEE
Confidence 556678899996 47999999999999999999974 443 8899995 7899 799999983 689999999999
Q ss_pred ccCCCeeEEeeec
Q 001076 224 SPSGKHSYIFQQL 236 (1163)
Q Consensus 224 ~~~~~~ayifq~l 236 (1163)
+.. +.|.|...
T Consensus 104 G~~--~~~~f~~p 114 (120)
T 1wln_A 104 GTS--HVFKFVDP 114 (120)
T ss_dssp TTT--EEEEEECS
T ss_pred CCc--eEEEEECC
Confidence 763 67778743
No 135
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.80 E-value=7.6e-09 Score=125.99 Aligned_cols=49 Identities=31% Similarity=0.429 Sum_probs=41.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 1009 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg 1009 (1163)
...|++++|++.+++.+...+.. ...+||+||||||||+||++||..+.
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~----------------g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQ----------------KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHT----------------TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccccceEECchhhHhhccccccC----------------CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 35688999999999888777641 14799999999999999999999884
No 136
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.78 E-value=2.1e-08 Score=138.27 Aligned_cols=139 Identities=23% Similarity=0.393 Sum_probs=93.4
Q ss_pred ceEEEEcCCCChHHHHHHHH-HHHhCCcEEEEeccccccccccchHHHHHHHHHHH-h--------------ccCCeEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAV-ATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA-S--------------KIAPSVVF 1048 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArAL-A~eLg~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A-~--------------k~~PsILf 1048 (1163)
++|||+||||||||++|+.+ +...+.+++.++++...+. ..+...+... . ...+.|||
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlF 1341 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLF 1341 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCCCceEEEE
Confidence 68999999999999999554 4444788888887664421 2333333322 1 11246999
Q ss_pred EccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccC------CCCEEEEEEeCCC-----CCCCHHHHhccCcEEEec
Q 001076 1049 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD------KERVLVLAATNRP-----FDLDEAVVRRLPRRLMVN 1117 (1163)
Q Consensus 1049 IDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~------~~~VlVIaTTN~p-----~~Ld~aLlrRFd~vI~I~ 1117 (1163)
||||+.-...+. +.+. ...++.+++. ..++.... -.++.+|||+|++ ..|+++|+||| .++.++
T Consensus 1342 iDEinmp~~d~y--g~q~-~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~i~ 1416 (2695)
T 4akg_A 1342 CDEINLPKLDKY--GSQN-VVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AILYLG 1416 (2695)
T ss_dssp EETTTCSCCCSS--SCCH-HHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEEECC
T ss_pred eccccccccccc--Cchh-HHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEEEeC
Confidence 999985322211 2222 2233344432 22322111 1368999999998 48999999999 899999
Q ss_pred CCCHHHHHHHHHHHHhh
Q 001076 1118 LPDAPNREKIIRVILAK 1134 (1163)
Q Consensus 1118 ~Pd~eeR~eILk~ll~k 1134 (1163)
.|+.+++..|+..++..
T Consensus 1417 ~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1417 YPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp CCTTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998864
No 137
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=98.78 E-value=2e-08 Score=115.98 Aligned_cols=95 Identities=20% Similarity=0.277 Sum_probs=79.5
Q ss_pred CCCccceeccccCCCCceeeecceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcCeecC
Q 001076 130 SRIPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHP 208 (1163)
Q Consensus 130 ~~~pW~rL~s~~~~~p~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~~~~ 208 (1163)
...||..|+.... -..+.+....++|||+..||+.|+|+.+|..||+|... ++. ++|+|. |+||| ||||+++.
T Consensus 285 ~~~~~~~l~~~~~-g~~~~l~~~~~~iGR~~~~di~l~~~~vSr~Ha~i~~~--~~~--~~l~Dl~S~nGt-~vng~~i~ 358 (388)
T 2ff4_A 285 GQQAVAYLHDIAS-GRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDT--GTN--YVINDLRSSNGV-HVQHERIR 358 (388)
T ss_dssp SSBCCCEEEETTT-CCEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEEC--SSC--EEEEECSCSSCC-EETTEECS
T ss_pred CCCCeEEEEECCC-CcEEEECCCCEEEecCCCCeEEECCCccChhHeEEEEE--CCE--EEEEECCCCCCe-EECCEECC
Confidence 3469999988533 35788888999999999999999999999999999874 333 889996 78999 79999995
Q ss_pred CCceEEeeCCCEEEEccCCCeeEEeee
Q 001076 209 KDSQVVLRGGDELVFSPSGKHSYIFQQ 235 (1163)
Q Consensus 209 k~~~~~L~~gDev~f~~~~~~ayifq~ 235 (1163)
..+.|++||+|.|+. ..++|..
T Consensus 359 --~~~~L~~gd~i~~G~---~~~~~~~ 380 (388)
T 2ff4_A 359 --SAVTLNDGDHIRICD---HEFTFQI 380 (388)
T ss_dssp --SEEEECTTCEEEETT---EEEEEEC
T ss_pred --CceECCCCCEEEECC---EEEEEEe
Confidence 589999999999964 5677763
No 138
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=98.75 E-value=4.8e-08 Score=96.11 Aligned_cols=98 Identities=16% Similarity=0.220 Sum_probs=71.9
Q ss_pred CCCCccceeccccCCCCceeee--cceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEecCCceEEEcCee
Q 001076 129 GSRIPWARLISQCSQNSHLSMT--GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNV 206 (1163)
Q Consensus 129 ~~~~pW~rL~s~~~~~p~~~i~--~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~~~~G~v~vNg~~ 206 (1163)
....|.=-.|.-..+...+.++ ++..+|||...||+.|.++.+|..||.|...+ +|. ++|++.++||| +|||+.
T Consensus 23 ~~~~PhLvnLn~Dp~~s~~l~y~L~~~t~IGR~~~~DI~L~~~~Vs~~Ha~I~~~~-~g~--~~l~dl~~ngt-~VNG~~ 98 (124)
T 3fm8_A 23 GDDKCFLVNLNADPALNELLVYYLKEHTLIGSANSQDIQLCGMGILPEHCIIDITS-EGQ--VMLTPQKNTRT-FVNGSS 98 (124)
T ss_dssp ----CEEEETTCCTTSSCCCEEECCSEEEEESSTTCSEECCSTTCCSSCEEEEECT-TSC--EEEEECTTCCE-EETTEE
T ss_pred cCCccEEEEeCCCCccCceEEEECCCCeEECCCCCCCEEECCCCeecceEEEEECC-CCe--EEEEECCCCCE-EECCEE
Confidence 4444543333333344444444 45789999999999999999999999998642 344 78999999998 799999
Q ss_pred cCCCceEEeeCCCEEEEccCCCeeEEee
Q 001076 207 HPKDSQVVLRGGDELVFSPSGKHSYIFQ 234 (1163)
Q Consensus 207 ~~k~~~~~L~~gDev~f~~~~~~ayifq 234 (1163)
|.+ .+.|+.||.|.|+. .+.|.|-
T Consensus 99 V~~--~~~L~~GD~I~lG~--~~~FrFn 122 (124)
T 3fm8_A 99 VSS--PIQLHHGDRILWGN--NHFFRLN 122 (124)
T ss_dssp CCS--CEEECTTCEEEETT--TEEEEEE
T ss_pred cCC--cEECCCCCEEEECC--CeEEEEE
Confidence 974 78999999999974 3566664
No 139
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.73 E-value=2.6e-08 Score=115.08 Aligned_cols=164 Identities=21% Similarity=0.268 Sum_probs=99.1
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc----
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS---- 1022 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s---- 1022 (1163)
.++|.....+.+.+.+... ......|||+|++||||+++|++|.... +.+|+.+||+.+..
T Consensus 138 ~~ig~s~~m~~l~~~i~~~------------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKI------------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHH------------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred hhhhccHHhhHHHHHHHHh------------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 4566666666766665431 1223569999999999999999998877 47999999987532
Q ss_pred -ccccchHH-------HHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEE
Q 001076 1023 -KWFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1094 (1163)
Q Consensus 1023 -~~~Ge~E~-------~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIa 1094 (1163)
..+|...+ .....|..|.. ++||||||+.| +...+..+.+++++-...--|.......++.||+
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l-----~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~ 277 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGEL-----SLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILA 277 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGC-----CHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEE
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEE
Confidence 22232111 11234555543 89999999988 2233333333222211001111111235789999
Q ss_pred EeCCC-------CCCCHHHHhccCcEEEecCCCHHHH----HHHHHHHHhh
Q 001076 1095 ATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNR----EKIIRVILAK 1134 (1163)
Q Consensus 1095 TTN~p-------~~Ld~aLlrRFd~vI~I~~Pd~eeR----~eILk~ll~k 1134 (1163)
|||.. ..+.+.+..|+ .++.+..|...+| ..++++++.+
T Consensus 278 at~~~l~~~~~~g~fr~dl~~rl-~~~~i~lPpLreR~~Di~~l~~~~l~~ 327 (387)
T 1ny5_A 278 ATNRNIKELVKEGKFREDLYYRL-GVIEIEIPPLRERKEDIIPLANHFLKK 327 (387)
T ss_dssp EESSCHHHHHHTTSSCHHHHHHH-TTEEEECCCGGGCHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHcCCccHHHHHhh-cCCeecCCcchhccccHHHHHHHHHHH
Confidence 99973 46777788787 3566777776555 4455555543
No 140
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.72 E-value=2.1e-08 Score=102.39 Aligned_cols=98 Identities=18% Similarity=0.199 Sum_probs=59.3
Q ss_pred CCCcccccCc----HHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEe
Q 001076 945 GVTFDDIGAL----ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINIS 1016 (1163)
Q Consensus 945 ~~tfddI~Gl----eevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL----g~pfi~Id 1016 (1163)
..+|+++.+. .++.+.+.+++.. .. ..+..+++|+||+|+|||+|++++++.+ |..++.++
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHN----------FN-PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHS----------CC-GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHh----------cc-ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4578887763 3344444444432 11 1123679999999999999999999887 77777788
Q ss_pred ccccccccccchHH-HHHHHHHHHhccCCeEEEEcccccc
Q 001076 1017 MSSITSKWFGEGEK-YVKAVFSLASKIAPSVVFVDEVDSM 1055 (1163)
Q Consensus 1017 ~seL~s~~~Ge~E~-~Ir~lF~~A~k~~PsILfIDEID~L 1055 (1163)
+.++...+...... ....++.. -..|.+|+|||++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 75 TKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS
T ss_pred HHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC
Confidence 77655332111000 00011111 125789999999843
No 141
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=98.62 E-value=1.2e-07 Score=89.08 Aligned_cols=70 Identities=11% Similarity=0.193 Sum_probs=59.6
Q ss_pred CCCceeee-cceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEecCCceEEEcCeecCCCceEEeeCCCE
Q 001076 143 QNSHLSMT-GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDE 220 (1163)
Q Consensus 143 ~~p~~~i~-~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~~~~G~v~vNg~~~~k~~~~~L~~gDe 220 (1163)
.-|.+.+. ...|++||+++|+|+|+||++|..|+.|.+.++| .|+- .+.||+|||||+++ ..+.|..||-
T Consensus 11 ~~p~v~l~~~~~~rIGR~~~~~l~LddpsVs~~HAti~~~~~G----~~~l-~S~nGtVFVNGqrv---~~~~I~~gDt 81 (102)
T 3uv0_A 11 GLPAILLKADTIYRIGRQKGLEISIADESMELAHATACILRRG----VVRL-AALVGKIFVNDQEE---TVVDIGMENA 81 (102)
T ss_dssp TSCCEECCTTCCEEEESSTTSTEECCCTTSCTTCEEEEEEETT----EEEE-EESSSCEEETTEEE---SEEEECGGGC
T ss_pred CcccEEeecCcEEEEcCCCCCcEEECCcccccceEEEEecCCc----eEEE-EeccCcEEECCEEe---eeEEccCCcc
Confidence 44555555 4789999999999999999999999999988666 4443 49999999999999 5899999998
No 142
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.62 E-value=6.7e-07 Score=99.18 Aligned_cols=177 Identities=15% Similarity=0.144 Sum_probs=109.9
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc-----
Q 001076 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT----- 1021 (1163)
Q Consensus 947 tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~----- 1021 (1163)
....++|.++..+.|.+ +. . ..++|+||+|+|||+|++.++++++..++.+++....
T Consensus 11 ~~~~~~gR~~el~~L~~-l~---------------~--~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR---------------A--PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI 72 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC---------------S--SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCC
T ss_pred CHHHhcChHHHHHHHHH-hc---------------C--CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCC
Confidence 44578899988888876 52 1 3799999999999999999999998778888875420
Q ss_pred c--ccc------------------------------c---c------hHHHHHHHHHHHhcc--CCeEEEEccccccccC
Q 001076 1022 S--KWF------------------------------G---E------GEKYVKAVFSLASKI--APSVVFVDEVDSMLGR 1058 (1163)
Q Consensus 1022 s--~~~------------------------------G---e------~E~~Ir~lF~~A~k~--~PsILfIDEID~L~g~ 1058 (1163)
+ ... + . ....+..++....+. .|.+|+|||++.+...
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 73 SYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKL 152 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGC
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhcc
Confidence 0 000 0 0 011233444433332 3899999999977431
Q ss_pred CCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCC---------HHHHhccCcEEEecCCCHHHHHHHHH
Q 001076 1059 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD---------EAVVRRLPRRLMVNLPDAPNREKIIR 1129 (1163)
Q Consensus 1059 r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld---------~aLlrRFd~vI~I~~Pd~eeR~eILk 1129 (1163)
. ...... .+..+... . .++.+|.|++....+. ..+..|+...+.+.+.+.++..+++.
T Consensus 153 ~-~~~~~~----~l~~~~~~---~-----~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~ 219 (357)
T 2fna_A 153 R-GVNLLP----ALAYAYDN---L-----KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLR 219 (357)
T ss_dssp T-TCCCHH----HHHHHHHH---C-----TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHH
T ss_pred C-chhHHH----HHHHHHHc---C-----CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHH
Confidence 1 111111 22222221 1 2577777776432111 12333555689999999999999999
Q ss_pred HHHhhCCCCChhhHHHHHHHcCCCCH
Q 001076 1130 VILAKEELASDVDLEGIANMADGYSG 1155 (1163)
Q Consensus 1130 ~ll~k~~l~~dvdl~~LA~~TeGySg 1155 (1163)
..+...+...+. ...+...|.|+..
T Consensus 220 ~~~~~~~~~~~~-~~~i~~~t~G~P~ 244 (357)
T 2fna_A 220 RGFQEADIDFKD-YEVVYEKIGGIPG 244 (357)
T ss_dssp HHHHHHTCCCCC-HHHHHHHHCSCHH
T ss_pred HHHHHcCCCCCc-HHHHHHHhCCCHH
Confidence 877643333222 2788899998754
No 143
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.61 E-value=6.8e-08 Score=100.13 Aligned_cols=100 Identities=18% Similarity=0.260 Sum_probs=60.8
Q ss_pred CCCCcccccCcHH----HHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 001076 944 IGVTFDDIGALEN----VKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINIS 1016 (1163)
Q Consensus 944 ~~~tfddI~Glee----vk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id 1016 (1163)
...+|+++.+... +.+.+..++.. ......+.+++|+||+|||||+||+++++.+ +.+++.++
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAE----------YEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHH----------CCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHH----------hhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3457888887543 33333333321 1001123689999999999999999999988 78888888
Q ss_pred ccccccccccch-HHHHHHHHHHHhccCCeEEEEcccccc
Q 001076 1017 MSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1163)
Q Consensus 1017 ~seL~s~~~Ge~-E~~Ir~lF~~A~k~~PsILfIDEID~L 1055 (1163)
++++........ ...+..++..... +.+||||||+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 90 VPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred hHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 877654322110 0011222333222 359999999754
No 144
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.60 E-value=6e-09 Score=112.25 Aligned_cols=170 Identities=23% Similarity=0.285 Sum_probs=104.0
Q ss_pred eeeecCCCCCCCCCCCC--CCC-CCCcccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcC--
Q 001076 645 GVRFDRSIPEGNNLGGF--CED-DHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG-- 719 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~~~--c~~-~~~ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~-- 719 (1163)
||.+-+|.+.||+.-.. |.. ..+|+.-.+..- .+.|.+.....+..+|+.+.. ..|.|+|+||||.+...
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~---~~~~i~~~Deid~l~~~~~ 125 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF--VEMFVGVGAARVRDLFETAKR---HAPCIVFIDEIDAVGRKRG 125 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH--HHSCTTHHHHHHHHHHHHHTT---SSSEEEEEETHHHHHC---
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH--HHHHhhHHHHHHHHHHHHHHh---cCCeEEEehhhhhhhcccC
Confidence 57777899999986511 111 122222111111 123455555566666666543 68999999999995432
Q ss_pred ------ChhhHHHHHHHHhcCCC-----CEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCccccccccc
Q 001076 720 ------NNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSK 788 (1163)
Q Consensus 720 ------~~~~~~~i~s~L~~L~g-----~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~ 788 (1163)
+.+....+...|..|.| .+|+++++++++. ||+
T Consensus 126 ~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~----------------------ld~-------------- 169 (254)
T 1ixz_A 126 SGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI----------------------LDP-------------- 169 (254)
T ss_dssp ------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGG----------------------SCG--------------
T ss_pred ccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchh----------------------CCH--------------
Confidence 22223333334444422 4777788885443 444
Q ss_pred cchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhhhhcCCC-CcccccchhhcccCCch
Q 001076 789 ETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTT 865 (1163)
Q Consensus 789 ~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~sg 865 (1163)
+++| ||++.+++++|+.+.|.+|++.|.. ...+ .++++..++..+.||++
T Consensus 170 -------------------------~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~ 222 (254)
T 1ixz_A 170 -------------------------ALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVG 222 (254)
T ss_dssp -------------------------GGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCH
T ss_pred -------------------------HHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCcccCHHHHHHHcCCCCH
Confidence 3333 5555556666666666666666543 2234 56788999999999999
Q ss_pred hhhhhHHhHHhhhhhhh
Q 001076 866 EGVEKIVGWALSHHFMH 882 (1163)
Q Consensus 866 adIe~Lv~~Aas~Al~r 882 (1163)
+||+.+|..|+.+|..+
T Consensus 223 ~dl~~~~~~a~~~a~~~ 239 (254)
T 1ixz_A 223 ADLENLLNEAALLAARE 239 (254)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988754
No 145
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.58 E-value=1.2e-06 Score=96.94 Aligned_cols=181 Identities=17% Similarity=0.171 Sum_probs=110.5
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc-----
Q 001076 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT----- 1021 (1163)
Q Consensus 947 tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~----- 1021 (1163)
.-..++|.+...+.|.+.+.. + ..++|+||+|+|||+|++.+++..+ ++.+++....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~----------~------~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~ 71 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN----------Y------PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGH 71 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH----------C------SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTC
T ss_pred ChHhcCChHHHHHHHHHHHhc----------C------CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccC
Confidence 345788999999999887641 1 4799999999999999999999986 6666654321
Q ss_pred -------c---cccc-------------------------chHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHH
Q 001076 1022 -------S---KWFG-------------------------EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHE 1066 (1163)
Q Consensus 1022 -------s---~~~G-------------------------e~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~e 1066 (1163)
. ..++ .....+..+...+....|.+|+|||++.+..... ... .
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~-~~~-~ 149 (350)
T 2qen_A 72 ITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS-RGG-K 149 (350)
T ss_dssp BCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-TTT-H
T ss_pred CCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-cch-h
Confidence 0 0000 1111222222333333489999999998742100 001 1
Q ss_pred HHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCC---------CHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCC
Q 001076 1067 AMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL---------DEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL 1137 (1163)
Q Consensus 1067 al~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~L---------d~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l 1137 (1163)
.....+..+. +.. .++.+|.|+.....+ ...+..|+...+.+.+.+.++-.+++...+...+.
T Consensus 150 ~~~~~L~~~~---~~~-----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~ 221 (350)
T 2qen_A 150 ELLALFAYAY---DSL-----PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL 221 (350)
T ss_dssp HHHHHHHHHH---HHC-----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHH---Hhc-----CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 1112222222 221 356777776542111 11233355568999999999999999988765443
Q ss_pred C-ChhhHHHHHHHcCCCCH
Q 001076 1138 A-SDVDLEGIANMADGYSG 1155 (1163)
Q Consensus 1138 ~-~dvdl~~LA~~TeGySg 1155 (1163)
. ++..+..+...|.|+-.
T Consensus 222 ~~~~~~~~~i~~~tgG~P~ 240 (350)
T 2qen_A 222 DVPENEIEEAVELLDGIPG 240 (350)
T ss_dssp CCCHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHhCCCHH
Confidence 2 45667888999998764
No 146
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.58 E-value=2.3e-07 Score=93.25 Aligned_cols=106 Identities=23% Similarity=0.319 Sum_probs=69.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCC
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE 1060 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~ 1060 (1163)
...++|+||+|+|||+|+++++..+ |..++.++..++... +....+.||+|||++.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~---- 96 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG---- 96 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC----
Confidence 3579999999999999999999988 777888888776543 112357899999998752
Q ss_pred CcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeC-CCCCCC--HHHHhccCcEEEecC
Q 001076 1061 NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN-RPFDLD--EAVVRRLPRRLMVNL 1118 (1163)
Q Consensus 1061 s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN-~p~~Ld--~aLlrRFd~vI~I~~ 1118 (1163)
...++.+..+++.+... ...++|.|+| .+..+. +.+.+|+..-..+.+
T Consensus 97 -~~~~~~l~~li~~~~~~---------g~~~iiits~~~p~~l~~~~~L~SRl~~g~~~~l 147 (149)
T 2kjq_A 97 -NEEQALLFSIFNRFRNS---------GKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEV 147 (149)
T ss_dssp -SHHHHHHHHHHHHHHHH---------TCCEEEEEESSCTTTSSCCHHHHHHGGGSEECCC
T ss_pred -hHHHHHHHHHHHHHHHc---------CCcEEEEECCCCHHHccccHHHHHHHhcCeeEEe
Confidence 12233444444443321 1222444555 454333 889999865554443
No 147
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=98.53 E-value=3.1e-07 Score=88.35 Aligned_cols=95 Identities=15% Similarity=0.134 Sum_probs=80.0
Q ss_pred cceeccccCCCCceeee--cceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEecCCceEEEcCeecCCCc
Q 001076 134 WARLISQCSQNSHLSMT--GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDS 211 (1163)
Q Consensus 134 W~rL~s~~~~~p~~~i~--~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~~~~G~v~vNg~~~~k~~ 211 (1163)
-|.|.|+...+|.|.|. ....+|||+.- ..+.|...|..||+|+-.-.++. +.+-+.|.|++ +|||+++.|+.
T Consensus 9 ~c~L~~~~~~~~~I~Lp~~~g~~viGR~p~--t~I~DkrcSR~hv~L~ad~~~~~--v~vk~lG~Np~-~vng~~l~k~~ 83 (110)
T 2brf_A 9 RLWLESPPGEAPPIFLPSDGQALVLGRGPL--TQVTDRKCSRTQVELVADPETRT--VAVKQLGVNPS-TTGTQELKPGL 83 (110)
T ss_dssp EEEEECSTTSSCCEECCSTTCCEEECSBTT--TTBCCTTSCSSCEEEEEETTTTE--EEEEECSSSCC-EEC-CBCCTTC
T ss_pred EEEEEeCCCCCCcEEeccCCCCEEEcCCCC--cccccccceeeeEEEEEecCCCE--EEEEEcccCCc-EECCEEcCCCC
Confidence 47899999999999995 68999999994 45899999999999995534444 66789999999 59999999999
Q ss_pred eEEeeCCCEEEEccCCCeeEEee
Q 001076 212 QVVLRGGDELVFSPSGKHSYIFQ 234 (1163)
Q Consensus 212 ~~~L~~gDev~f~~~~~~ayifq 234 (1163)
.+.|++||.+.+ .+++|.|-++
T Consensus 84 ~~~L~~GD~leL-l~g~y~~~v~ 105 (110)
T 2brf_A 84 EGSLGVGDTLYL-VNGLHPLTLR 105 (110)
T ss_dssp EEEEETTCEEEE-ETTEEEEEEE
T ss_pred EEEecCCCEEEE-ccCCeEEEEE
Confidence 999999999987 5778777655
No 148
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.52 E-value=1.7e-07 Score=107.65 Aligned_cols=164 Identities=23% Similarity=0.313 Sum_probs=97.2
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEeccccccc----
Q 001076 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSITSK---- 1023 (1163)
Q Consensus 950 dI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eLg~--pfi~Id~seL~s~---- 1023 (1163)
.++|.......+.+.+... . .....+||+|++||||+.+|+++....+. .|+.+||..+-..
T Consensus 130 ~~ig~s~~~~~~~~~~~~~-------a-----~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~ 197 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKI-------A-----KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAES 197 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHH-------H-----TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHH
T ss_pred cccccchHHHHHHhhhhhh-------h-----ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHH
Confidence 4667777777666655421 1 11246999999999999999999988743 3999999875322
Q ss_pred -cccchHH-------HHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEE
Q 001076 1024 -WFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1095 (1163)
Q Consensus 1024 -~~Ge~E~-------~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaT 1095 (1163)
.+|...+ .-...|..|. .++||||||+.| +...+..+.+++++-...--|.......++.+|++
T Consensus 198 ~lfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~a 269 (368)
T 3dzd_A 198 ELFGHEKGAFTGALTRKKGKLELAD---QGTLFLDEVGEL-----DQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISA 269 (368)
T ss_dssp HHHEECSCSSSSCCCCEECHHHHTT---TSEEEEETGGGS-----CHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEE
T ss_pred HhcCccccccCCcccccCChHhhcC---CCeEEecChhhC-----CHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEe
Confidence 2221111 1123455554 379999999988 32333333222222110001111111246889999
Q ss_pred eCCC-------CCCCHHHHhccCcEEEecCCCHHHH----HHHHHHHHhh
Q 001076 1096 TNRP-------FDLDEAVVRRLPRRLMVNLPDAPNR----EKIIRVILAK 1134 (1163)
Q Consensus 1096 TN~p-------~~Ld~aLlrRFd~vI~I~~Pd~eeR----~eILk~ll~k 1134 (1163)
||.. ..+.+.|..|+. ++.+..|...+| ..++++++.+
T Consensus 270 t~~~l~~~v~~g~fr~dL~~rl~-~~~i~lPpLreR~~Di~~l~~~~l~~ 318 (368)
T 3dzd_A 270 TNKNLEEEIKKGNFREDLYYRLS-VFQIYLPPLRERGKDVILLAEYFLKK 318 (368)
T ss_dssp ESSCHHHHHHTTSSCHHHHHHHT-SEEEECCCGGGSTTHHHHHHHHHHHH
T ss_pred cCCCHHHHHHcCCccHHHHHHhC-CeEEeCCChhhchhhHHHHHHHHHHH
Confidence 9863 466778888883 566666665554 5566666654
No 149
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=98.51 E-value=4.4e-07 Score=86.26 Aligned_cols=95 Identities=20% Similarity=0.271 Sum_probs=79.4
Q ss_pred cceeccccCCCCceeee-cceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEecCCceEEEcCeecCCCce
Q 001076 134 WARLISQCSQNSHLSMT-GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQ 212 (1163)
Q Consensus 134 W~rL~s~~~~~p~~~i~-~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~~~~G~v~vNg~~~~k~~~ 212 (1163)
=|-|.|+....|.+.+. +...+|||+..|.+ .|...|..||+|+-...+|. +.+-+.|.|++ +|||+.+.|+..
T Consensus 4 ~c~L~~~~~~~~~I~L~~g~~v~iGR~p~t~I--~DkrcSR~h~~L~~~~~~g~--v~vk~lg~Np~-~vng~~l~k~~~ 78 (102)
T 3kt9_A 4 VCWLVRQDSRHQRIRLPHLEAVVIGRGPETKI--TDKKCSRQQVQLKAECNKGY--VKVKQVGVNPT-SIDSVVIGKDQE 78 (102)
T ss_dssp EEEEEETTSTTCEEECCBTCEEEECSSTTTCC--CCTTSCSSCEEEEEETTTTE--EEEEECSSSCC-EETTEECCBTCE
T ss_pred eEEEEecCCCCCcEEcCCCCcEEeccCCcccc--ccCcccCcceEEEEecCCCE--EEEEECcCCCC-eECCEEcCCCCe
Confidence 37799998888888886 46788999998855 79999999999997755553 67889999999 599999999999
Q ss_pred EEeeCCCEEEEccCCCeeEEee
Q 001076 213 VVLRGGDELVFSPSGKHSYIFQ 234 (1163)
Q Consensus 213 ~~L~~gDev~f~~~~~~ayifq 234 (1163)
+.|++||.|.+ .+++|.|-++
T Consensus 79 ~~L~~GD~l~L-l~~~~~~~v~ 99 (102)
T 3kt9_A 79 VKLQPGQVLHM-VNELYPYIVE 99 (102)
T ss_dssp EEECTTCCEEE-ETTEEEEEEE
T ss_pred EEeCCCCEEEE-ccCCceEEEE
Confidence 99999999877 4667766543
No 150
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.49 E-value=4.9e-08 Score=106.92 Aligned_cols=170 Identities=23% Similarity=0.285 Sum_probs=106.2
Q ss_pred eeeecCCCCCCCCCCCC--CCC-CCCcccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcC--
Q 001076 645 GVRFDRSIPEGNNLGGF--CED-DHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG-- 719 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~~~--c~~-~~~ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~-- 719 (1163)
||.+-+|.+.||+.-.. |.. ..+|+.-.+..- ...+.+.....+..+|+.+.. ..|.|+|+||||.+...
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~---~~~~i~~iDeid~l~~~~~ 149 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF--VEMFVGVGAARVRDLFETAKR---HAPCIVFIDEIDAVGRKRG 149 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH--HHSTTTHHHHHHHHHHHHHHT---SCSEEEEEETHHHHHCC--
T ss_pred eEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHH--HHHHhhHHHHHHHHHHHHHHh---cCCcEEehhhhHhhhcccc
Confidence 67888899999986511 111 122222111110 123444555556666766544 78999999999984332
Q ss_pred ------ChhhHHHHHHHHhcCCC-----CEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCccccccccc
Q 001076 720 ------NNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSK 788 (1163)
Q Consensus 720 ------~~~~~~~i~s~L~~L~g-----~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~~ 788 (1163)
+.+....+...|..|.| .+|+++++++++. ||+
T Consensus 150 ~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~----------------------ld~-------------- 193 (278)
T 1iy2_A 150 SGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI----------------------LDP-------------- 193 (278)
T ss_dssp ------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTS----------------------SCH--------------
T ss_pred cccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchh----------------------CCH--------------
Confidence 22334444455555544 4777788885433 333
Q ss_pred cchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhhhhcCCC-CcccccchhhcccCCch
Q 001076 789 ETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTT 865 (1163)
Q Consensus 789 ~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~sg 865 (1163)
+++| ||++.+++++|+.+.|.+|++.|.. ...+ .++++..++..+.||++
T Consensus 194 -------------------------~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~ 246 (278)
T 1iy2_A 194 -------------------------ALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVG 246 (278)
T ss_dssp -------------------------HHHSTTSSCCEEECCCCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCH
T ss_pred -------------------------hHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc--cCCCCcccCHHHHHHHcCCCCH
Confidence 4444 5666666666666666667666543 2234 56788899999999999
Q ss_pred hhhhhHHhHHhhhhhhh
Q 001076 866 EGVEKIVGWALSHHFMH 882 (1163)
Q Consensus 866 adIe~Lv~~Aas~Al~r 882 (1163)
+||+.+|..|+.++..+
T Consensus 247 ~dl~~l~~~a~~~a~~~ 263 (278)
T 1iy2_A 247 ADLENLLNEAALLAARE 263 (278)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999888753
No 151
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.45 E-value=1.4e-08 Score=112.69 Aligned_cols=157 Identities=11% Similarity=0.062 Sum_probs=98.0
Q ss_pred ceeeeecCCCCCCCCCCCC--CCC-CCCccc-ccccccccCCCcchhhHHHHHHHHHHHHhhcc-CCCeEEEEcchhhhh
Q 001076 643 KIGVRFDRSIPEGNNLGGF--CED-DHGFFC-TASSLRLDSSLGDEVDKLAINELFEVALNESK-SSPLIVFVKDIEKSL 717 (1163)
Q Consensus 643 kvgV~Fd~~~~~~~~l~~~--c~~-~~~ff~-~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k-~~P~IIffddid~~L 717 (1163)
..||.|.+|+|+|||.-.. |.. +..|+. +.+.+ .++|.++....++.+|+.+.+..+ .+|.||||||||++.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l---~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGEL---ESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHH---HCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHh---hhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 3588899999999997621 111 112221 11232 367999999999999988876555 789999999999955
Q ss_pred cCCh----------hhHHHHHHHHhcC-------------CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccc
Q 001076 718 TGNN----------DAYGALKSKLENL-------------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDL 774 (1163)
Q Consensus 718 a~~~----------~~~~~i~s~L~~L-------------~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp 774 (1163)
.+.. .+.+.|...|+.. ..+|+||+++|+++. ||+
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~----------------------ld~ 170 (293)
T 3t15_A 113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFST----------------------LYA 170 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC------------------------C
T ss_pred CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCccc----------------------CCH
Confidence 4222 2334444444311 247999999996544 333
Q ss_pred cCCCCccccccccccchHHHHHhhhccccceeecCCchhHHHH--HHHHHHHHhhhhhhccchhhHHHhhhhcCCCCccc
Q 001076 775 AFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVD 852 (1163)
Q Consensus 775 ~~pd~~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~LpdlkgR~~Il~IHT~l~~~~L~~vd 852 (1163)
|++| ||++.++ +|+.+.|.+|++.|.. . ...+
T Consensus 171 ---------------------------------------al~R~~R~d~~i~--~P~~~~r~~Il~~~~~--~---~~~~ 204 (293)
T 3t15_A 171 ---------------------------------------PLIRDGRMEKFYW--APTREDRIGVCTGIFR--T---DNVP 204 (293)
T ss_dssp ---------------------------------------HHHHHHHEEEEEE--CCCHHHHHHHHHHHHG--G---GCCC
T ss_pred ---------------------------------------HHhCCCCCceeEe--CcCHHHHHHHHHHhcc--C---CCCC
Confidence 6666 7776665 5777778888775532 2 2345
Q ss_pred ccchhhcccCCchhhhhh
Q 001076 853 LESLCIKDQTLTTEGVEK 870 (1163)
Q Consensus 853 LeeLa~~tkg~sgadIe~ 870 (1163)
++.++..+.+|++++|+-
T Consensus 205 ~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 205 AEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHhCCCCcccHHH
Confidence 777888889999999874
No 152
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=98.39 E-value=1.1e-06 Score=87.42 Aligned_cols=97 Identities=15% Similarity=0.089 Sum_probs=83.0
Q ss_pred ccceeccccCCCCceeee--cceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEecCCceEEEcCeecCCC
Q 001076 133 PWARLISQCSQNSHLSMT--GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKD 210 (1163)
Q Consensus 133 pW~rL~s~~~~~p~~~i~--~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~~~~G~v~vNg~~~~k~ 210 (1163)
+-|.|.++...+|.|.|. ....+|||+. ...+.|...|..||+|+-.-.+|. +.+=..|.|++ +|||+.+.|+
T Consensus 8 ~~c~L~p~d~~~~~I~Lp~~~g~vvIGRgP--et~ItDkRcSR~qv~L~ad~~~g~--V~Vk~lG~NP~-~vng~~L~k~ 82 (143)
T 1yj5_C 8 GRLWLQSPTGGPPPIFLPSDGQALVLGRGP--LTQVTDRKCSRNQVELIADPESRT--VAVKQLGVNPS-TVGVHELKPG 82 (143)
T ss_dssp EEEEEECCTTSCCCEECCTTTCEEEECSBT--TTTBCCSSSCSSCEEEEEETTTTE--EEEEECSSSCC-EETTEECCTT
T ss_pred CeEEEEecCCCCCcEEeccCCCCEEEcCCC--ccccccccccceeEEEEEecCCCe--EEEEEcccCCc-EECCEEecCC
Confidence 678999999999999995 6899999999 456899999999999995433333 56779999999 5999999999
Q ss_pred ceEEeeCCCEEEEccCCCeeEEeee
Q 001076 211 SQVVLRGGDELVFSPSGKHSYIFQQ 235 (1163)
Q Consensus 211 ~~~~L~~gDev~f~~~~~~ayifq~ 235 (1163)
..+.|++||.|.+ ..|.|.|-+.-
T Consensus 83 ~~~~L~~GD~LeL-l~g~y~f~V~f 106 (143)
T 1yj5_C 83 LSGSLSLGDVLYL-VNGLYPLTLRW 106 (143)
T ss_dssp CEEEECTTCEEES-SSSCSEEEEEE
T ss_pred CEEEecCCCEEEE-ecCCceEEEEe
Confidence 9999999999977 67888887764
No 153
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.35 E-value=1.7e-07 Score=86.38 Aligned_cols=75 Identities=8% Similarity=-0.043 Sum_probs=61.4
Q ss_pred hhhhhhccchhhHHHhhhhcCCCCcccccchhhcccCCchhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHH
Q 001076 826 DVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLN 905 (1163)
Q Consensus 826 ~LpdlkgR~~Il~IHT~l~~~~L~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~ 905 (1163)
..||.++|.+|+++|+..+... .+++|+.||..|.||+||||+.||++|+..++++.. ..+...
T Consensus 9 ~~Pd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~---------------~~I~~~ 72 (86)
T 2krk_A 9 SHPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR---------------VHVTQE 72 (86)
T ss_dssp CCCCHHHHHHHHHHHTTTSEEC-TTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTC---------------SEECHH
T ss_pred CCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcC---------------CCCCHH
Confidence 3589999999999998733222 689999999999999999999999999999997642 246778
Q ss_pred HHHhhhhhhhh
Q 001076 906 ILQGIQSESKS 916 (1163)
Q Consensus 906 dF~~al~eikp 916 (1163)
||..++..+++
T Consensus 73 df~~Al~~v~p 83 (86)
T 2krk_A 73 DFEMAVAKVMQ 83 (86)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHcc
Confidence 88888776654
No 154
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.35 E-value=2.1e-06 Score=118.84 Aligned_cols=131 Identities=18% Similarity=0.215 Sum_probs=96.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcch
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1064 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~ 1064 (1163)
.++++.||+|||||++++++|+.+|.+++.++|.+-+. ...+..+|..+.... +++++|||+++ .+..
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~-----~~ev 713 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRL-----DEKV 713 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSS-----CHHH
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhc-----ChHH
Confidence 57999999999999999999999999999999987543 245677787776654 89999999976 3333
Q ss_pred HHHHHHHHHHHHHHh---------cCCcccCCCCEEEEEEeCC----CCCCCHHHHhccCcEEEecCCCHHHHHHHH
Q 001076 1065 HEAMRKMKNEFMVNW---------DGLRTKDKERVLVLAATNR----PFDLDEAVVRRLPRRLMVNLPDAPNREKII 1128 (1163)
Q Consensus 1065 ~eal~~il~~LL~~L---------dgl~~k~~~~VlVIaTTN~----p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eIL 1128 (1163)
...+...+..++..+ .|....-+.++.|++|.|+ ...|++++.+|| +.+.+..|+.+...+|+
T Consensus 714 Ls~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~ 789 (2695)
T 4akg_A 714 LSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSF-REFSMKSPQSGTIAEMI 789 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTE-EEEECCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhhe-EEEEeeCCCHHHHHHHH
Confidence 333333333332222 1211223457788899984 568999999999 78999999998887775
No 155
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.31 E-value=3.5e-07 Score=103.41 Aligned_cols=112 Identities=15% Similarity=0.238 Sum_probs=67.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc--EEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGAN--FINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP 1062 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~p--fi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~ 1062 (1163)
..+||+||||+|||+||.++|...|.+ |+.+...+.++.+....+..+..++....+.. +||||+|+.+.......
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~ 201 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGN 201 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccccccc
Confidence 457999999999999999999876544 55553244333333455666666776666655 99999999985433220
Q ss_pred ----chHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHH
Q 001076 1063 ----GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEA 1105 (1163)
Q Consensus 1063 ----~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~a 1105 (1163)
.....+++++..|...+.. .++.+|+++|. ...+++
T Consensus 202 s~~G~v~~~lrqlL~~L~~~~k~------~gvtVIlttnp-~s~dea 241 (331)
T 2vhj_A 202 TTSGGISRGAFDLLSDIGAMAAS------RGCVVIASLNP-TSNDDK 241 (331)
T ss_dssp -----CCHHHHHHHHHHHHHHHH------HTCEEEEECCC-SSCSSS
T ss_pred cccchHHHHHHHHHHHHHHHHhh------CCCEEEEEeCC-cccchh
Confidence 0122344444444433321 34678888884 444433
No 156
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=98.30 E-value=7.6e-07 Score=86.63 Aligned_cols=96 Identities=16% Similarity=0.106 Sum_probs=81.6
Q ss_pred ccceeccccCCCCceeee--cceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEecCCceEEEcCeecCCC
Q 001076 133 PWARLISQCSQNSHLSMT--GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKD 210 (1163)
Q Consensus 133 pW~rL~s~~~~~p~~~i~--~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~~~~G~v~vNg~~~~k~ 210 (1163)
.-|.|.++...+|.|.|. ....+|||+.- ..+.|...|..||+|+-.-.++. +.+-..|.|++ +|||+++.|+
T Consensus 15 ~~c~L~~~~~~~~~I~Lp~~~g~~viGRgp~--t~I~DkrcSR~qv~L~ad~~~~~--v~vk~lG~NP~-~vng~~l~k~ 89 (119)
T 1ujx_A 15 GRLWLQSPTGGPPPIFLPSDGQALVLGRGPL--TQVTDRKCSRNQVELIADPESRT--VAVKQLGVNPS-TVGVQELKPG 89 (119)
T ss_dssp CCEEEECCSSSCCCCCCCTTSCCEEESBBTT--TTBCCTTSCTTSEEEEEETTTTE--EEEEECSSSCC-BSSSSBCCTT
T ss_pred ceEEEEeCCCCCCcEEeccCCCCEEEcCCCC--cccccccccceeEEEEEecCCCE--EEEEEcccCCc-EECCEEecCC
Confidence 568999999999999995 68999999994 56799999999999995433333 66779999999 5999999999
Q ss_pred ceEEeeCCCEEEEccCCCeeEEee
Q 001076 211 SQVVLRGGDELVFSPSGKHSYIFQ 234 (1163)
Q Consensus 211 ~~~~L~~gDev~f~~~~~~ayifq 234 (1163)
..+.|++||.+.+ ..+.|.|-++
T Consensus 90 ~~~~L~~GD~l~L-l~g~y~~~v~ 112 (119)
T 1ujx_A 90 LSGSLSLGDVLYL-VNGLYPLTLR 112 (119)
T ss_dssp CEEEEETTCCCBC-BTTBSCCEEE
T ss_pred CEEEecCCCEEEE-ecCCeEEEEE
Confidence 9999999999877 5788888665
No 157
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.29 E-value=4.8e-07 Score=106.63 Aligned_cols=152 Identities=19% Similarity=0.142 Sum_probs=88.1
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHH-HHHhCCcEEEEe-cc---ccccccc
Q 001076 951 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAV-ATEAGANFINIS-MS---SITSKWF 1025 (1163)
Q Consensus 951 I~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArAL-A~eLg~pfi~Id-~s---eL~s~~~ 1025 (1163)
|.|++.++..|.-.+.-.... .+...+|||.|+||+ ||+||+++ ++.+....+... ++ .+.....
T Consensus 215 I~G~e~vK~aLll~L~GG~~k---------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK---------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLK 284 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS---------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc---------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEE
Confidence 569999888776555311100 111237999999999 99999999 665533322211 11 1111100
Q ss_pred cc-hHHHHHHHHHHHhccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCC----
Q 001076 1026 GE-GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---- 1100 (1163)
Q Consensus 1026 Ge-~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~---- 1100 (1163)
+. .-..-.+.+..|. .+|+|||||+.+ +...+.++.+.+++-...+.|. .-+.++.||||+|+.+
T Consensus 285 ~~tG~~~~~G~l~LAd---gGvl~lDEIn~~-----~~~~qsaLlEaMEe~~VtI~G~--~lparf~VIAA~NP~~~yd~ 354 (506)
T 3f8t_A 285 EDRGWALRAGAAVLAD---GGILAVDHLEGA-----PEPHRWALMEAMDKGTVTVDGI--ALNARCAVLAAINPGEQWPS 354 (506)
T ss_dssp ESSSEEEEECHHHHTT---TSEEEEECCTTC-----CHHHHHHHHHHHHHSEEEETTE--EEECCCEEEEEECCCC--CC
T ss_pred cCCCcccCCCeeEEcC---CCeeehHhhhhC-----CHHHHHHHHHHHhCCcEEECCE--EcCCCeEEEEEeCcccccCC
Confidence 00 0000012333443 389999999977 4445556666555544444554 3457899999999865
Q ss_pred -------CCCHHHHhccCcEEEe-cCCCHH
Q 001076 1101 -------DLDEAVVRRLPRRLMV-NLPDAP 1122 (1163)
Q Consensus 1101 -------~Ld~aLlrRFd~vI~I-~~Pd~e 1122 (1163)
.|++++++|||..+.+ +.|+.+
T Consensus 355 ~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e 384 (506)
T 3f8t_A 355 DPPIARIDLDQDFLSHFDLIAFLGVDPRPG 384 (506)
T ss_dssp SCGGGGCCSCHHHHTTCSEEEETTC-----
T ss_pred CCCccccCCChHHhhheeeEEEecCCCChh
Confidence 7889999999865443 555543
No 158
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.28 E-value=8.2e-07 Score=93.84 Aligned_cols=129 Identities=15% Similarity=0.199 Sum_probs=80.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH--------hC-CcEEEEeccccccccc----------cchHH--HHHHHHHHH--hc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATE--------AG-ANFINISMSSITSKWF----------GEGEK--YVKAVFSLA--SK 1041 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~e--------Lg-~pfi~Id~seL~s~~~----------Ge~E~--~Ir~lF~~A--~k 1041 (1163)
.-.|++|+||+|||++|.+++.. .| .+++..++.++....+ ..... ....++..+ ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 35799999999999999886544 34 6776677665543222 11100 112233321 22
Q ss_pred cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCH
Q 001076 1042 IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDA 1121 (1163)
Q Consensus 1042 ~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~ 1121 (1163)
...+||+|||++.+++.+.... +.. .++..+.. .....+-||.+|+.+..|+..+++|+...+++..|..
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~--e~~-----rll~~l~~---~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGS--KIP-----ENVQWLNT---HRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKM 155 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTC--CCC-----HHHHGGGG---TTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECSS
T ss_pred cCceEEEEEChhhhccCccccc--hhH-----HHHHHHHh---cCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCccc
Confidence 3478999999999986542111 111 13333332 2234567788888899999999999999999887654
Q ss_pred HH
Q 001076 1122 PN 1123 (1163)
Q Consensus 1122 ee 1123 (1163)
..
T Consensus 156 ~~ 157 (199)
T 2r2a_A 156 GM 157 (199)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 159
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.24 E-value=9.6e-07 Score=98.98 Aligned_cols=70 Identities=24% Similarity=0.329 Sum_probs=46.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccccccccch-HHHHHHHHHHHhccCCeEEEEcccccc
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL----g~pfi~Id~seL~s~~~Ge~-E~~Ir~lF~~A~k~~PsILfIDEID~L 1055 (1163)
..+++|+||||||||+||.+||+++ +.+++.+++++++..+.... ...+..++.... ...|||||||+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 4689999999999999999999865 48888888877654332211 111111222222 3469999999654
No 160
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=98.18 E-value=5.5e-06 Score=86.70 Aligned_cols=96 Identities=24% Similarity=0.391 Sum_probs=72.3
Q ss_pred eecccc--CCCCceeee---cceeEEccC---CccceeecCCCCCccceEEEEeecCC-cceEEEEEecCCceEEEcCee
Q 001076 136 RLISQC--SQNSHLSMT---GAVFTVGHN---RQCDLYLKDPSISKNLCRLRRIENGG-PSGALLEITGGKGEVEVNGNV 206 (1163)
Q Consensus 136 rL~s~~--~~~p~~~i~---~~~~t~G~~---~~cd~~l~d~~~s~~~c~l~~~~~~g-~~~a~le~~~~~G~v~vNg~~ 206 (1163)
-|+.++ ++...+.+| ...-+|||. ..||+.|.++.|+..||.|.....++ ..++.|+...++.| +|||+.
T Consensus 70 hLvnLn~Dp~ls~~l~y~L~~g~t~VGr~~~~~~~dI~L~G~~I~~~Hc~i~~~~~~~~~~~vtl~p~~~a~t-~VNG~~ 148 (184)
T 4egx_A 70 HLVNLNEDPLMSECLLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADT-YVNGKK 148 (184)
T ss_dssp EEEECCCCTTCSSCSEEECCSEEEEEECSSSSSCCSEECCSTTCCSEEEEEEEECCSSCSCEEEEEECTTCCE-EETTEE
T ss_pred eEEeccCCcccCceEEEEECCCcCcCCCCCcCCCCeEEECccccccccEEEEEcCCCCceEEEEEeeCCCCeE-EEcCEE
Confidence 355554 233344444 356899985 46999999999999999999765443 34678888766655 899999
Q ss_pred cCCCceEEeeCCCEEEEccCCCeeEEeeec
Q 001076 207 HPKDSQVVLRGGDELVFSPSGKHSYIFQQL 236 (1163)
Q Consensus 207 ~~k~~~~~L~~gDev~f~~~~~~ayifq~l 236 (1163)
|.. .+.|++||.|+|+ .+|.|.|.+.
T Consensus 149 I~~--~~~L~~GDrI~lG--~~h~Frfn~P 174 (184)
T 4egx_A 149 VTE--PSILRSGNRIIMG--KSHVFRFNHP 174 (184)
T ss_dssp CCS--CEECCTTCEEEET--TTEEEEEECH
T ss_pred ccc--cEEcCCCCEEEEC--CCCEEEECCh
Confidence 964 6889999999997 4688998753
No 161
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.15 E-value=8.1e-07 Score=79.82 Aligned_cols=72 Identities=10% Similarity=-0.006 Sum_probs=59.2
Q ss_pred hhhhhhccchhhHHHhhhhcCCC-CcccccchhhcccCCchhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhH
Q 001076 826 DVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGL 904 (1163)
Q Consensus 826 ~LpdlkgR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~ 904 (1163)
+||+.++|.+|+++|+.-. ++ .+++++.||..|.||+|+||+.+|++|+..++++.. ..+..
T Consensus 1 plPd~~~R~~Il~~~l~~~--~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~---------------~~i~~ 63 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKM--NLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR---------------VHVTQ 63 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTS--EECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC---------------SEECH
T ss_pred CcCCHHHHHHHHHHHhcCC--CCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC---------------CCCCH
Confidence 5899999999999997622 23 688999999999999999999999999999997632 23567
Q ss_pred HHHHhhhhhh
Q 001076 905 NILQGIQSES 914 (1163)
Q Consensus 905 ~dF~~al~ei 914 (1163)
.||..++.++
T Consensus 64 ~d~~~Al~~v 73 (78)
T 3kw6_A 64 EDFEMAVAKV 73 (78)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7888776655
No 162
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.10 E-value=1.7e-06 Score=79.92 Aligned_cols=71 Identities=14% Similarity=0.028 Sum_probs=58.3
Q ss_pred hhhccchhhHHHhhhhcCCC-CcccccchhhcccCCchhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHHHH
Q 001076 829 TLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL 907 (1163)
Q Consensus 829 dlkgR~~Il~IHT~l~~~~L-~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~dF 907 (1163)
|.++|.+|+++|+.-. ++ .+++|+.||..|.||+||||..||++|+..++++... .+...||
T Consensus 2 d~~~R~~Il~~~~~~~--~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~---------------~i~~~df 64 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSM--SVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK---------------VATEKDF 64 (88)
T ss_dssp CSSHHHHHHHHHHTTS--CBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCS---------------SBCHHHH
T ss_pred CHHHHHHHHHHHHCCC--CCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccc---------------cCCHHHH
Confidence 4578999999998632 23 6899999999999999999999999999999987432 2567889
Q ss_pred Hhhhhhhhh
Q 001076 908 QGIQSESKS 916 (1163)
Q Consensus 908 ~~al~eikp 916 (1163)
..++..+.+
T Consensus 65 ~~Al~~v~~ 73 (88)
T 3vlf_B 65 LKAVDKVIS 73 (88)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhc
Confidence 888777653
No 163
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.02 E-value=1.2e-05 Score=85.58 Aligned_cols=126 Identities=16% Similarity=0.176 Sum_probs=71.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcch
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1064 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~ 1064 (1163)
+++||+||||||||++|.++|+.+.-.++.+..... ..+ +..+. ...||+|||++.-
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s-~f~-----------l~~l~--~~kIiiLDEad~~--------- 115 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTS-HFW-----------LEPLT--DTKVAMLDDATTT--------- 115 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSS-CGG-----------GGGGT--TCSSEEEEEECHH---------
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccc-hhh-----------hcccC--CCCEEEEECCCch---------
Confidence 579999999999999999999998655443221110 000 11111 1349999999721
Q ss_pred HHHHHHHHH-HHHHHhcCCc----ccCC-----CCEEEEEEeCCC---CCCCHHHHhccCcEEEecCC------------
Q 001076 1065 HEAMRKMKN-EFMVNWDGLR----TKDK-----ERVLVLAATNRP---FDLDEAVVRRLPRRLMVNLP------------ 1119 (1163)
Q Consensus 1065 ~eal~~il~-~LL~~Ldgl~----~k~~-----~~VlVIaTTN~p---~~Ld~aLlrRFd~vI~I~~P------------ 1119 (1163)
..+.+. .+...++|-. .+-+ ....+|.|||.. +..-..+.+|+ .++.++.|
T Consensus 116 ---~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi-~~f~F~~~~p~~~~g~p~~~ 191 (212)
T 1tue_A 116 ---CWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRI-TVFEFPNAFPFDKNGNPVYE 191 (212)
T ss_dssp ---HHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSC-EEEECCSCCCBCTTSCBSCC
T ss_pred ---hHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhE-EEEEcCCCCCCCCCCCeeEE
Confidence 122222 3344455531 1111 134677788873 22336788887 46666532
Q ss_pred -CHHHHHHHHHHHHhhCCC
Q 001076 1120 -DAPNREKIIRVILAKEEL 1137 (1163)
Q Consensus 1120 -d~eeR~eILk~ll~k~~l 1137 (1163)
+.+.-..+|+.+..+..+
T Consensus 192 ~~~~~wk~ff~~~~~~l~l 210 (212)
T 1tue_A 192 INDKNWKCFFERTWSRLDL 210 (212)
T ss_dssp CCHHHHHHHHHHHTGGGTC
T ss_pred eCcchHHHHHHHHHHhcCC
Confidence 356667777777655443
No 164
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.02 E-value=3e-06 Score=76.94 Aligned_cols=72 Identities=10% Similarity=0.000 Sum_probs=58.4
Q ss_pred hhhccchhhHHHhhhhcCCCCcccccchhhcccCCchhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHHHHH
Q 001076 829 TLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQ 908 (1163)
Q Consensus 829 dlkgR~~Il~IHT~l~~~~L~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~dF~ 908 (1163)
|.++|.+|+++|+...... .+++++.||..|.||+||||+.+|++|+..++++.. ..+...+|.
T Consensus 2 d~~~R~~Il~~~l~~~~~~-~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~---------------~~i~~~df~ 65 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLS-EEVDLEDYVARPDKISGADINSICQESGMLAVRENR---------------YIVLAKDFE 65 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBC-TTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCC---------------SSBCHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc---------------CCcCHHHHH
Confidence 4578999999998633221 688999999999999999999999999999987542 245678898
Q ss_pred hhhhhhhh
Q 001076 909 GIQSESKS 916 (1163)
Q Consensus 909 ~al~eikp 916 (1163)
.++.+++|
T Consensus 66 ~Al~~~~p 73 (83)
T 3aji_B 66 KAYKTVIK 73 (83)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHcc
Confidence 88877765
No 165
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.02 E-value=3.1e-06 Score=75.97 Aligned_cols=46 Identities=26% Similarity=0.401 Sum_probs=43.8
Q ss_pred cCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1117 NLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1117 ~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
++|+.++|.+||+.++.+..+..++|+..||..|+||||+||+.+|
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~ 46 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVC 46 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHH
Confidence 5899999999999999998888899999999999999999999987
No 166
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.02 E-value=1.7e-05 Score=110.75 Aligned_cols=139 Identities=21% Similarity=0.362 Sum_probs=89.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEeccccccccccchHHHHHHHHHHH---hc-------------cCCeEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITSKWFGEGEKYVKAVFSLA---SK-------------IAPSVV 1047 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL-g~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A---~k-------------~~PsIL 1047 (1163)
++|||+||||||||+++...+..+ +.+++.++++.-.. ...+.+.+... ++ ....||
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 579999999999998776654444 77788888766432 12333333310 01 112599
Q ss_pred EEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcc------cCCCCEEEEEEeCCC-----CCCCHHHHhccCcEEEe
Q 001076 1048 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDKERVLVLAATNRP-----FDLDEAVVRRLPRRLMV 1116 (1163)
Q Consensus 1048 fIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~------k~~~~VlVIaTTN~p-----~~Ld~aLlrRFd~vI~I 1116 (1163)
|||||+.- ....-+.+.. ..++.+++.. .++.. ..-.++.+|||.|++ ..|++.|+||| .++.+
T Consensus 1379 FiDDiNmp--~~D~yGtQ~~-ielLrqlld~-~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F-~vi~i 1453 (3245)
T 3vkg_A 1379 FCDEINLP--STDKYGTQRV-ITFIRQMVEK-GGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA-PILLV 1453 (3245)
T ss_dssp EETTTTCC--CCCTTSCCHH-HHHHHHHHHH-SEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC-CEEEC
T ss_pred EecccCCC--CccccccccH-HHHHHHHHHc-CCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc-eEEEe
Confidence 99999832 2221122222 2333344332 11111 112578999999987 57999999999 67999
Q ss_pred cCCCHHHHHHHHHHHHhh
Q 001076 1117 NLPDAPNREKIIRVILAK 1134 (1163)
Q Consensus 1117 ~~Pd~eeR~eILk~ll~k 1134 (1163)
+.|+.++...|+..++..
T Consensus 1454 ~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1454 DFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999998887654
No 167
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=97.93 E-value=3.7e-06 Score=77.42 Aligned_cols=47 Identities=26% Similarity=0.393 Sum_probs=44.4
Q ss_pred ecCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1116 VNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1116 I~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
-.+|+.++|.+||+.++++..+..++|++.||+.|+||||+||+.||
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~ 54 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVC 54 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHH
Confidence 35899999999999999998888899999999999999999999998
No 168
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.85 E-value=7.8e-05 Score=104.24 Aligned_cols=131 Identities=18% Similarity=0.202 Sum_probs=92.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcch
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1064 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~~ 1064 (1163)
.+..+.||+|||||.+++.+|+.+|.+++.++|.+-+. ...+.++|..+... .+..++|||+++ ....
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl-----~~~v 672 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRL-----EERI 672 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSS-----CHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcC-----CHHH
Confidence 46789999999999999999999999999999987543 23566777776654 578999999987 2222
Q ss_pred HHHHHHHHHHHHHH---------hc-CCcccCCCCEEEEEEeCC----CCCCCHHHHhccCcEEEecCCCHHHHHHHH
Q 001076 1065 HEAMRKMKNEFMVN---------WD-GLRTKDKERVLVLAATNR----PFDLDEAVVRRLPRRLMVNLPDAPNREKII 1128 (1163)
Q Consensus 1065 ~eal~~il~~LL~~---------Ld-gl~~k~~~~VlVIaTTN~----p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eIL 1128 (1163)
...+...+..+... +. |-..+-+..+.|++|.|+ ...|++.+..|| +.+.+..|+.+...+|+
T Consensus 673 LSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lF-r~v~m~~Pd~~~i~ei~ 749 (3245)
T 3vkg_A 673 LSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLF-RSMAMIKPDREMIAQVM 749 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTE-EEEECCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhc-EEEEEeCCCHHHHHHHH
Confidence 22222212211111 11 222223456788889885 468999999999 78999999988877764
No 169
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.82 E-value=2.6e-05 Score=86.00 Aligned_cols=119 Identities=20% Similarity=0.293 Sum_probs=68.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEccccccccCCCCcc
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG 1063 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g~r~s~~ 1063 (1163)
.++|||+||||||||++|.+||+.++. +-.++... .. ..|..+ ....|+++||.... ..
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~--~~----------f~l~~~--~~k~i~l~Ee~~~~------~d 162 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTN--EN----------FPFNDC--VDKMVIWWEEGKMT------AK 162 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTC--SS----------CTTGGG--SSCSEEEECSCCEE------TT
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc-cceeeccc--cc----------cccccc--cccEEEEeccccch------hH
Confidence 357999999999999999999998654 22222211 00 011111 22356667776533 11
Q ss_pred hHHHHHHHHHHHHHHhcCCc----ccCC-----CCEEEEEEeCC-C----------CCCCHHHHhccCcEEEec------
Q 001076 1064 EHEAMRKMKNEFMVNWDGLR----TKDK-----ERVLVLAATNR-P----------FDLDEAVVRRLPRRLMVN------ 1117 (1163)
Q Consensus 1064 ~~eal~~il~~LL~~Ldgl~----~k~~-----~~VlVIaTTN~-p----------~~Ld~aLlrRFd~vI~I~------ 1117 (1163)
....++.++ +|.. .+.. .+..||.|||. + +...+.|.+|+ .++.|.
T Consensus 163 ~~~~lr~i~-------~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~-~~f~F~~~~p~~ 234 (267)
T 1u0j_A 163 VVESAKAIL-------GGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRM-FKFELTRRLDHD 234 (267)
T ss_dssp THHHHHHHH-------TTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTE-EEEECCSCCCTT
T ss_pred HHHHHHHHh-------CCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhE-EEEECCCcCCcc
Confidence 223333322 2111 1111 34567778876 1 24558899887 667776
Q ss_pred --CCCHHHHHHHHHHH
Q 001076 1118 --LPDAPNREKIIRVI 1131 (1163)
Q Consensus 1118 --~Pd~eeR~eILk~l 1131 (1163)
..+.++...+|+..
T Consensus 235 ~~~lt~~~~~~f~~w~ 250 (267)
T 1u0j_A 235 FGKVTKQEVKDFFRWA 250 (267)
T ss_dssp SCCCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH
Confidence 66788888888844
No 170
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=97.77 E-value=5.5e-05 Score=84.51 Aligned_cols=81 Identities=20% Similarity=0.202 Sum_probs=61.5
Q ss_pred ceeeecceeEEccCCccc---eeecCCCCCccceEEEEee-------cCCcceEEEEEe-cCCceEEEcCeecCCCceEE
Q 001076 146 HLSMTGAVFTVGHNRQCD---LYLKDPSISKNLCRLRRIE-------NGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVV 214 (1163)
Q Consensus 146 ~~~i~~~~~t~G~~~~cd---~~l~d~~~s~~~c~l~~~~-------~~g~~~a~le~~-~~~G~v~vNg~~~~k~~~~~ 214 (1163)
.+.+....|+|||...++ +.++|+++|..|+.|+-.. ..+....+|+|. |.||| +|||+++. ++++.
T Consensus 15 r~~L~pg~YlIGR~~~~~~~lI~idD~SISRqHA~I~v~~v~~~dg~~~~~~~l~I~DLgSknGT-fVNGerI~-~~~~~ 92 (325)
T 3huf_A 15 SRILFPGTYIVGRNVSDDSSHIQVISKSISKRHARFTILTPSEKDYFTGGPCEFEVKDLDTKFGT-KVNEKVVG-QNGDS 92 (325)
T ss_dssp CEEECSEEEEEESSCCCBTTEEECCCTTSCSSCEEEEECCCCHHHHHHCCCCCEEEEECSCSSCE-EETTEECC-TTCEE
T ss_pred EEEecCCeEEECCCCCccCceeecCCCCccccceEEEEecccccccccCCcceEEEEECCCCCCE-EECCEECC-Cceee
Confidence 344566669999976633 5889999999999997531 122445889996 67799 69999995 55677
Q ss_pred ee-CCCEEEEccCCC
Q 001076 215 LR-GGDELVFSPSGK 228 (1163)
Q Consensus 215 L~-~gDev~f~~~~~ 228 (1163)
|. .||+|.|+....
T Consensus 93 L~~dgd~I~fG~~~~ 107 (325)
T 3huf_A 93 YKEKDLKIQLGKCPF 107 (325)
T ss_dssp ECSSEEEEEETTCSS
T ss_pred ecCCCCEEEecCCcc
Confidence 75 699999998755
No 171
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.73 E-value=5.6e-05 Score=102.02 Aligned_cols=113 Identities=20% Similarity=0.243 Sum_probs=73.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc----ccc------------ccchHHHHHHHHHHHhcc
Q 001076 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----SKW------------FGEGEKYVKAVFSLASKI 1042 (1163)
Q Consensus 982 ~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~----s~~------------~Ge~E~~Ir~lF~~A~k~ 1042 (1163)
.+...++|+||||||||+||.+++.++ |..+..++....+ ... ....|+.+..++..++..
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~ 1504 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 1504 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcC
Confidence 445789999999999999999998776 6677777766432 111 234567788888888889
Q ss_pred CCeEEEEccccccccCC---C--CcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEe
Q 001076 1043 APSVVFVDEVDSMLGRR---E--NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1096 (1163)
Q Consensus 1043 ~PsILfIDEID~L~g~r---~--s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTT 1096 (1163)
.|++||||+|+.+++.. + .........+++.+++..|.+.... .+++||+|.
T Consensus 1505 ~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~--~~v~VI~tN 1561 (2050)
T 3cmu_A 1505 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ--SNTLLIFIN 1561 (2050)
T ss_dssp CCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHT--TTCEEEEEE
T ss_pred CCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHh--CCcEEEEEc
Confidence 99999999999887531 0 0000001123445555555544332 456666554
No 172
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.68 E-value=2.2e-05 Score=71.23 Aligned_cols=68 Identities=15% Similarity=0.035 Sum_probs=44.0
Q ss_pred hccchhhHHHhhhhcCCCCcccccchhhcccCCchhhhhhHHhHHhhhhhhhcCCCCCCCCcccccccchhhhHHHHHhh
Q 001076 831 KGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGI 910 (1163)
Q Consensus 831 kgR~~Il~IHT~l~~~~L~~vdLeeLa~~tkg~sgadIe~Lv~~Aas~Al~r~~~qi~~~~kl~Id~~sI~v~~~dF~~a 910 (1163)
++|.+|+++|+..... -.+++|+.||..|.||+||||..+|++|+..++.+.. ..+...||..+
T Consensus 1 ~~R~~Il~~~l~~~~~-~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~---------------~~i~~~df~~A 64 (82)
T 2dzn_B 1 MERRLIFGTIASKMSL-APEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR---------------YVILQSDLEEA 64 (82)
T ss_dssp -------------CEE-CTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTC---------------SEECHHHHHHH
T ss_pred CHHHHHHHHHHcCCCC-CCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc---------------CCcCHHHHHHH
Confidence 4689999999863221 1678999999999999999999999999999998632 13567888888
Q ss_pred hhhh
Q 001076 911 QSES 914 (1163)
Q Consensus 911 l~ei 914 (1163)
+.++
T Consensus 65 l~~v 68 (82)
T 2dzn_B 65 YATQ 68 (82)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 7665
No 173
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=97.60 E-value=0.00015 Score=71.07 Aligned_cols=77 Identities=21% Similarity=0.206 Sum_probs=64.0
Q ss_pred CCCCceeeecceeEEccCC-ccceeecCCCCCccceEEEEeecCCcceEEEEEecCCceEEEcCeecCCCceEEeeCCCE
Q 001076 142 SQNSHLSMTGAVFTVGHNR-QCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDE 220 (1163)
Q Consensus 142 ~~~p~~~i~~~~~t~G~~~-~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~~~~G~v~vNg~~~~k~~~~~L~~gDe 220 (1163)
-.--.+++....|+||.+. .|||.|.|+.++..||.|...+++ .+|. -+.||+ ||||..+.-+. .|..|+-
T Consensus 14 ~~G~~l~L~~~~~~IGs~~~~~DLvL~D~~Vs~~H~~L~~~~~g----~~L~-~s~ngt-~vdG~~v~~~~--~L~~g~~ 85 (123)
T 4a0e_A 14 HRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEG----IRLT-DSAEPL-LQEGLPVPLGT--LLRAGSC 85 (123)
T ss_dssp GTTCEEEECSEEEEEESCTTTCSEECCCTTSCSSCEEEEEETTE----EEEE-EESSCC-EETTEECCTTC--BCCTTSC
T ss_pred CCCcEEEcCCCcEEECCCCCCCCEEEeCCCccceeEEEEECCCe----EEEE-eccCCE-EECCEEccccc--ccCCCCE
Confidence 3444788999999999999 999999999999999999987655 6665 666777 79999988765 8999998
Q ss_pred EEEccC
Q 001076 221 LVFSPS 226 (1163)
Q Consensus 221 v~f~~~ 226 (1163)
+.++..
T Consensus 86 l~lG~~ 91 (123)
T 4a0e_A 86 LEVGFL 91 (123)
T ss_dssp EEETTE
T ss_pred EEEccE
Confidence 877544
No 174
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=97.60 E-value=2.7e-05 Score=71.79 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1120 DAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1120 d~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
+.++|.+||+.++.+.++..++|+..||+.|+||||+||+.||
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~ 44 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVC 44 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHH
Confidence 5689999999999999988999999999999999999999998
No 175
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=97.55 E-value=0.00011 Score=79.93 Aligned_cols=65 Identities=14% Similarity=0.180 Sum_probs=50.3
Q ss_pred cceeEEccCCccceeecCCCCCccceEEEEeecC--CcceEEEEEec-CCceEEEcCeecCCCceEEee-CCCEEEE
Q 001076 151 GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENG--GPSGALLEITG-GKGEVEVNGNVHPKDSQVVLR-GGDELVF 223 (1163)
Q Consensus 151 ~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~--g~~~a~le~~~-~~G~v~vNg~~~~k~~~~~L~-~gDev~f 223 (1163)
...+||||+..||+.++|+ ++ .+.++.. ++ |. .+||+.+ +||+|||||+++... ..|+ .||+|.|
T Consensus 91 ~~~itIG~~~~~dI~l~~~--~~-~~~~~~~-~~~~~~--~~l~~l~s~ngtvyvNg~~i~~~--~~L~~~GD~I~i 159 (238)
T 1wv3_A 91 QDTMTIGPNAYDDMVIQSL--MN-AIIIKDF-QSIQES--QYVRIVHDKNTDVYINYELQEQL--TNKAYIGDHIYV 159 (238)
T ss_dssp CSEEEEESSTTSSEECTTC--SS-CEEEECG-GGHHHH--CEEEEECCTTCCEEETTEECCSS--EEEEETTCEEEE
T ss_pred CceEEEeCCCCCeEEeCCC--ee-EEEEecc-cCcCCc--EEEEEccCCCCCEEECCEEeccc--eeccCCcCEEEE
Confidence 3499999999999999998 33 3444432 11 23 5789987 889999999999654 4799 9999988
No 176
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.55 E-value=0.00052 Score=70.85 Aligned_cols=28 Identities=39% Similarity=0.663 Sum_probs=24.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFI 1013 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi 1013 (1163)
.+.|.||+|+|||+|++.|+..+++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 5789999999999999999998875543
No 177
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.54 E-value=0.00012 Score=97.67 Aligned_cols=76 Identities=26% Similarity=0.346 Sum_probs=59.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc----------------cccccccchHHHHHHHHHHHhccCCe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS----------------ITSKWFGEGEKYVKAVFSLASKIAPS 1045 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~se----------------L~s~~~Ge~E~~Ir~lF~~A~k~~Ps 1045 (1163)
+-|+++||+|+|||+||-.++.+. |-....++... |.-......|+.+.-+...++...++
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~ 1511 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1511 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCC
Confidence 349999999999999988775433 77777777643 22334566688888899999999999
Q ss_pred EEEEccccccccCCC
Q 001076 1046 VVFVDEVDSMLGRRE 1060 (1163)
Q Consensus 1046 ILfIDEID~L~g~r~ 1060 (1163)
+|+||.|..|.++..
T Consensus 1512 ~vvvDsv~al~~~~e 1526 (1706)
T 3cmw_A 1512 VIVVDSVAALTPKAE 1526 (1706)
T ss_dssp EEEESCSTTCCCTTT
T ss_pred EEEEccHHhCCcccc
Confidence 999999999987654
No 178
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.49 E-value=0.00081 Score=75.51 Aligned_cols=142 Identities=15% Similarity=0.148 Sum_probs=90.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CC-cEEEEeccccccccccchHHHHHHHHHHHh----ccCCeEEEEccccc-c
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GA-NFINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDS-M 1055 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~-pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~----k~~PsILfIDEID~-L 1055 (1163)
+.+||+||+|.||++.++++++.+ ++ ++..+... + +..++.++..+. ....-||+|||+|. +
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl 89 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------P--NTDWNAIFSLCQAMSLFASRQTLLLLLPENGP 89 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------T--TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCC
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------C--CCCHHHHHHHhcCcCCccCCeEEEEECCCCCC
Confidence 579999999999999999998876 33 22222111 1 112344444443 23467999999997 5
Q ss_pred ccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCC------CCCCHHHHhccCcEEEecCCCHHHHHHHHH
Q 001076 1056 LGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP------FDLDEAVVRRLPRRLMVNLPDAPNREKIIR 1129 (1163)
Q Consensus 1056 ~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p------~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk 1129 (1163)
. .. ..+.|+..++..+ ..+++|.+++.. ..+.+++.+|. .++.+..++..+....++
T Consensus 90 ~-----~~-------~~~aLl~~le~p~----~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 90 N-----AA-------INEQLLTLTGLLH----DDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp C-----TT-------HHHHHHHHHTTCB----TTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTHHHHHHH
T ss_pred C-----hH-------HHHHHHHHHhcCC----CCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHHHHHHHH
Confidence 2 11 2334444454322 334444444432 34567778887 689999999999999999
Q ss_pred HHHhhCCCC-ChhhHHHHHHHcCC
Q 001076 1130 VILAKEELA-SDVDLEGIANMADG 1152 (1163)
Q Consensus 1130 ~ll~k~~l~-~dvdl~~LA~~TeG 1152 (1163)
..+.+.++. ++..+..|+..+.|
T Consensus 153 ~~~~~~g~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 153 ARAKQLNLELDDAANQVLCYCYEG 176 (343)
T ss_dssp HHHHHTTCEECHHHHHHHHHSSTT
T ss_pred HHHHHcCCCCCHHHHHHHHHHhch
Confidence 998877654 44556677776665
No 179
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=97.48 E-value=5.2e-05 Score=68.71 Aligned_cols=43 Identities=30% Similarity=0.411 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1120 DAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1120 d~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
+.++|.+||+.++++..+.+++|+..||..|+||||+||+.+|
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~ 44 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSIC 44 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHH
Confidence 6789999999999998888899999999999999999999987
No 180
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.27 E-value=0.003 Score=75.80 Aligned_cols=165 Identities=13% Similarity=0.109 Sum_probs=93.5
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH-----hCC--cEEEEecccc-
Q 001076 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE-----AGA--NFINISMSSI- 1020 (1163)
Q Consensus 949 ddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~e-----Lg~--pfi~Id~seL- 1020 (1163)
..++|.+...+.|.+.+... ....+-|+|+|++|+|||+||..+++. ..+ .++.++....
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~ 191 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL------------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 191 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS------------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC
T ss_pred CeecccHHHHHHHHHHHhcc------------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc
Confidence 46899999999998877420 112356899999999999999998642 222 2444443221
Q ss_pred ----cccc------cc-----------chHHHHHHHHHHH-hccCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHH
Q 001076 1021 ----TSKW------FG-----------EGEKYVKAVFSLA-SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1078 (1163)
Q Consensus 1021 ----~s~~------~G-----------e~E~~Ir~lF~~A-~k~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~ 1078 (1163)
.... .+ ..+.....+.... .+..|.+|+||+++.. . .+.
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~----------~--------~l~- 252 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----------W--------VLK- 252 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH----------H--------HHH-
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH----------H--------HHH-
Confidence 0000 00 1111222222222 2236899999999732 1 111
Q ss_pred hcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEe---cCCCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCC
Q 001076 1079 WDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMV---NLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYS 1154 (1163)
Q Consensus 1079 Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I---~~Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGyS 1154 (1163)
.+ ..+..||.||........ . + ...+.+ ...+.++-.++|.................|++.|+|.-
T Consensus 253 --~l----~~~~~ilvTsR~~~~~~~-~--~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 253 --AF----DSQCQILLTTRDKSVTDS-V--M-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP 321 (591)
T ss_dssp --TT----CSSCEEEEEESCGGGGTT-C--C-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCH
T ss_pred --Hh----cCCCeEEEECCCcHHHHh-c--C-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCc
Confidence 11 134577778865432110 0 0 233444 36788888899988775421112345688899998764
No 181
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.24 E-value=0.00013 Score=80.05 Aligned_cols=131 Identities=13% Similarity=0.037 Sum_probs=80.5
Q ss_pred eeeecCCCCCCCCCCC-----CC-CCC---C-Cc-ccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcch
Q 001076 645 GVRFDRSIPEGNNLGG-----FC-EDD---H-GF-FCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDI 713 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~~-----~c-~~~---~-~f-f~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddi 713 (1163)
.|.|-+|+|+||+... .+ ..+ . .| ++....+ .+.|.+.....+..+|+.. .+.||||||+
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l---~~~~~g~~~~~~~~~~~~~------~~~vl~iDEi 139 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL---VGQYIGHTAPKTKEVLKRA------MGGVLFIDEA 139 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT---CCSSTTCHHHHHHHHHHHH------TTSEEEEETG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh---hhhcccccHHHHHHHHHhc------CCCEEEEECh
Confidence 5788889999998762 11 111 1 12 2222222 3567777766666666544 4679999999
Q ss_pred hhhhcC------ChhhHHHHHHHHhcCCCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCcccccccc
Q 001076 714 EKSLTG------NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRS 787 (1163)
Q Consensus 714 d~~La~------~~~~~~~i~s~L~~L~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~~r~ 787 (1163)
|.+... ..+....|...|+.-+++++||++++.... +.---++|
T Consensus 140 d~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~-----------------~~~~~~~~------------- 189 (309)
T 3syl_A 140 YYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRM-----------------ENFFQSNP------------- 189 (309)
T ss_dssp GGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHH-----------------HHHHHHST-------------
T ss_pred hhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHH-----------------HHHHhhCH-------------
Confidence 995432 345556677777777778999998874211 00000122
Q ss_pred ccchHHHHHhhhccccceeecCCchhHHHHHHHHH
Q 001076 788 KETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQ 822 (1163)
Q Consensus 788 ~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq 822 (1163)
.|-.+|...|.+++|.++.+..-+...
T Consensus 190 --------~l~~R~~~~i~~~~~~~~~~~~il~~~ 216 (309)
T 3syl_A 190 --------GFRSRIAHHIEFPDYSDEELFEIAGHM 216 (309)
T ss_dssp --------THHHHEEEEEEECCCCHHHHHHHHHHH
T ss_pred --------HHHHhCCeEEEcCCcCHHHHHHHHHHH
Confidence 255577788899999888877655443
No 182
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.16 E-value=0.0024 Score=66.14 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=30.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~se 1019 (1163)
+..-++|+||+|+|||+|+..+|...+.+++.++...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 3356899999999999999999986677888887654
No 183
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.09 E-value=0.003 Score=72.57 Aligned_cols=75 Identities=27% Similarity=0.314 Sum_probs=51.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc----c------------cchHHHHHHHHHHHhccC
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW----F------------GEGEKYVKAVFSLASKIA 1043 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~~----~------------Ge~E~~Ir~lF~~A~k~~ 1043 (1163)
+..-++|+||||+|||+||..+|..+ +.+++.++...-...+ . ...+..+..+....+...
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~ 152 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGA 152 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCC
Confidence 33568999999999999999988765 6788888865422111 1 122333333333444567
Q ss_pred CeEEEEcccccccc
Q 001076 1044 PSVVFVDEVDSMLG 1057 (1163)
Q Consensus 1044 PsILfIDEID~L~g 1057 (1163)
+.+|+||.+..|..
T Consensus 153 ~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 153 IDVVVVDSVAALTP 166 (366)
T ss_dssp CSEEEEECTTTCCC
T ss_pred CCEEEEeChHHhcc
Confidence 89999999999974
No 184
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.07 E-value=0.0045 Score=64.22 Aligned_cols=34 Identities=32% Similarity=0.439 Sum_probs=26.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~ 1017 (1163)
..-++|.||+|+|||+|++.++..+ +..++.++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 3568999999999999999998654 556665554
No 185
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.03 E-value=0.0037 Score=67.45 Aligned_cols=125 Identities=21% Similarity=0.269 Sum_probs=73.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc--------cccccc----------cc--hHHHHHHHHHHHhc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS--------ITSKWF----------GE--GEKYVKAVFSLASK 1041 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~se--------L~s~~~----------Ge--~E~~Ir~lF~~A~k 1041 (1163)
..|++.|++|+|||+++-.+|..+ |..++.++... +..... +. .+..+..+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~---- 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK---- 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH----
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh----
Confidence 469999999999999999998876 77777666532 111100 00 1122333322
Q ss_pred cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCC------------------CCCCC
Q 001076 1042 IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR------------------PFDLD 1103 (1163)
Q Consensus 1042 ~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~------------------p~~Ld 1103 (1163)
..|.+|+|||+-..-..... .......+ ..+ +. ..+=|++|+|. .+.++
T Consensus 83 ~~pdlvIVDElG~~~~~~~r--~~~~~qDV-~~~---l~-------sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vp 149 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPGSR--HTKRWQDI-QEL---LA-------AGIDVYTTVNVQHLESLNDQVRGITGVQVRETLP 149 (228)
T ss_dssp HCCSEEEESCTTCBCCTTCS--SSBHHHHH-HHH---HH-------TTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBC
T ss_pred cCCCEEEEeCCCCCCcccch--hHHHHHHH-HHH---Hc-------CCCCEEEEccccccccHHHHHHHHcCCCcCCcCc
Confidence 35899999999754111100 00111111 121 11 34566777762 35677
Q ss_pred HHHHhccCcEEEecCCCHHHHHH
Q 001076 1104 EAVVRRLPRRLMVNLPDAPNREK 1126 (1163)
Q Consensus 1104 ~aLlrRFd~vI~I~~Pd~eeR~e 1126 (1163)
..++.+.+.+..++.|..+-+.+
T Consensus 150 d~~~~~a~~v~lvD~~p~~l~~r 172 (228)
T 2r8r_A 150 DWVLQEAFDLVLIDLPPRELLER 172 (228)
T ss_dssp HHHHHTCSEEEEBCCCHHHHHHH
T ss_pred cHHHhhCCeEEEecCCHHHHHHH
Confidence 88888888888888887664444
No 186
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.96 E-value=0.0097 Score=76.75 Aligned_cols=166 Identities=11% Similarity=0.079 Sum_probs=97.1
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---C--C--cEEEEeccccc
Q 001076 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---G--A--NFINISMSSIT 1021 (1163)
Q Consensus 949 ddI~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g--~--pfi~Id~seL~ 1021 (1163)
..++|.++..+.|.+.+... ....+-|.|+|+.|+|||+||+.+++.. . + .++.++.+...
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~------------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKL------------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD 191 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTT------------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC
T ss_pred ceeccHHHHHHHHHHHHhhc------------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC
Confidence 46899999999999887421 1123568999999999999999987652 1 2 23345443310
Q ss_pred ------------cc---------cccchHHHHHHHHHHHhc--cCCeEEEEccccccccCCCCcchHHHHHHHHHHHHHH
Q 001076 1022 ------------SK---------WFGEGEKYVKAVFSLASK--IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1078 (1163)
Q Consensus 1022 ------------s~---------~~Ge~E~~Ir~lF~~A~k--~~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~ 1078 (1163)
.. ........+...+..... .++.+|+||+++... .
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~---------------------~ 250 (1249)
T 3sfz_A 192 KSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW---------------------V 250 (1249)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH---------------------H
T ss_pred chHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH---------------------H
Confidence 00 000111222233332222 347899999997430 1
Q ss_pred hcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecC-CCHHHHHHHHHHHHhhCCCCChhhHHHHHHHcCCC
Q 001076 1079 WDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL-PDAPNREKIIRVILAKEELASDVDLEGIANMADGY 1153 (1163)
Q Consensus 1079 Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~-Pd~eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGy 1153 (1163)
++.+ .....||.||..+...... ......+.+.. .+.++-.++|..+.....-.......+|++.+.|.
T Consensus 251 ~~~~----~~~~~ilvTtR~~~~~~~~--~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl 320 (1249)
T 3sfz_A 251 LKAF----DNQCQILLTTRDKSVTDSV--MGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS 320 (1249)
T ss_dssp HTTT----CSSCEEEEEESSTTTTTTC--CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC
T ss_pred HHhh----cCCCEEEEEcCCHHHHHhh--cCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC
Confidence 1222 1345788888765432110 11234577775 88888888888776443322234467888888775
No 187
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.93 E-value=0.0027 Score=66.78 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=48.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH--h-------CCcEEEEecccccc--------cccc----------------chH-
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATE--A-------GANFINISMSSITS--------KWFG----------------EGE- 1029 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~e--L-------g~pfi~Id~seL~s--------~~~G----------------e~E- 1029 (1163)
..-++|+||+|+|||+|+..++.. + +...+.++...... ..++ ..+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDH 103 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHHH
Confidence 356899999999999999999985 2 45677777654100 0001 011
Q ss_pred --HHHHHHHHHHhccCCeEEEEccccccccC
Q 001076 1030 --KYVKAVFSLASKIAPSVVFVDEVDSMLGR 1058 (1163)
Q Consensus 1030 --~~Ir~lF~~A~k~~PsILfIDEID~L~g~ 1058 (1163)
..+..+...+....|.+|+||++..++..
T Consensus 104 ~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 104 QTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 12233444455578999999999988743
No 188
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.90 E-value=0.00082 Score=69.68 Aligned_cols=30 Identities=17% Similarity=0.069 Sum_probs=23.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEE
Q 001076 986 GILLFGPPGTGKTMLAKAVATEA---GANFINI 1015 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eL---g~pfi~I 1015 (1163)
-++++||+|+|||+++..++..+ +..++.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 47899999999999987776654 5555443
No 189
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.89 E-value=0.004 Score=71.00 Aligned_cols=74 Identities=23% Similarity=0.326 Sum_probs=50.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc----ccc------------chHHHHHHHHHHHhccC
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----WFG------------EGEKYVKAVFSLASKIA 1043 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~----~~G------------e~E~~Ir~lF~~A~k~~ 1043 (1163)
+..-++|+||||+|||+||..++..+ +..++.++....... ..| ..+..+..+...+....
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGA 139 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCC
Confidence 33569999999999999999998665 667777776542211 111 22333333444455667
Q ss_pred CeEEEEccccccc
Q 001076 1044 PSVVFVDEVDSML 1056 (1163)
Q Consensus 1044 PsILfIDEID~L~ 1056 (1163)
|.+|+||++..++
T Consensus 140 ~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 140 LDIIVIDSVAALV 152 (349)
T ss_dssp CSEEEEECGGGCC
T ss_pred CCEEEEcChHhhc
Confidence 9999999999986
No 190
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.88 E-value=0.0016 Score=65.43 Aligned_cols=34 Identities=15% Similarity=0.338 Sum_probs=30.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 1018 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~s 1018 (1163)
.-|+|+|+||+|||++|++|++.++.+|+.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 4689999999999999999999999999887654
No 191
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.86 E-value=0.0035 Score=71.82 Aligned_cols=75 Identities=24% Similarity=0.260 Sum_probs=51.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc----------------cccchHHHHHHHHHHHhccC
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----------------WFGEGEKYVKAVFSLASKIA 1043 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~----------------~~Ge~E~~Ir~lF~~A~k~~ 1043 (1163)
+..-++|+||||+|||+|+..++..+ +..++.++....... .....+..+..+....+...
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGV 139 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcC
Confidence 33558999999999999999998775 667778886542210 11122333333333444567
Q ss_pred CeEEEEcccccccc
Q 001076 1044 PSVVFVDEVDSMLG 1057 (1163)
Q Consensus 1044 PsILfIDEID~L~g 1057 (1163)
+.+|+||.+..|++
T Consensus 140 ~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 140 VDLIVVDSVAALVP 153 (356)
T ss_dssp CSEEEEECTTTCCC
T ss_pred CCeEEehHhhhhcC
Confidence 89999999998874
No 192
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.85 E-value=0.00029 Score=81.38 Aligned_cols=63 Identities=27% Similarity=0.378 Sum_probs=42.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccccccccchHHHHHHHHHHHhccCCeEEEEcccccccc
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLG 1057 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID~L~g 1057 (1163)
+...++|+||+|+|||+|+++|+...+..++.+..+.- . . -|....-.+..++++||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~--~--------~--~~~lg~~~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD--R--------L--NFELGVAIDQFLVVFEDVKGTGG 230 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT--T--------H--HHHHGGGTTCSCEEETTCCCSTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch--h--------H--HHHHHHhcchhHHHHHHHHHHHH
Confidence 44679999999999999999999988776655332220 0 0 01111222446789999998754
No 193
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=96.81 E-value=0.0001 Score=66.88 Aligned_cols=41 Identities=27% Similarity=0.327 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhCCCCChhhHHHHHHHcCCCCHHHHHhhc
Q 001076 1122 PNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKVDY 1162 (1163)
Q Consensus 1122 eeR~eILk~ll~k~~l~~dvdl~~LA~~TeGySgaDLk~Lv 1162 (1163)
++|.+||+.++++..+..++|+..||..|+||||+||+.+|
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~ 41 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIM 41 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHH
Confidence 47999999999998888899999999999999999999997
No 194
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.67 E-value=0.00093 Score=67.80 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=29.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
.+.|+|+|++|+|||++|+.||+.++++|+..|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 357999999999999999999999999988665
No 195
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.63 E-value=0.00019 Score=77.90 Aligned_cols=98 Identities=20% Similarity=0.225 Sum_probs=56.6
Q ss_pred CceeeeecCCCCCCCCCCCCC--CC-CCCcccccccccccCCCcchhhH----HHHHHHHHHHHhhccCCCeEEEEcchh
Q 001076 642 SKIGVRFDRSIPEGNNLGGFC--ED-DHGFFCTASSLRLDSSLGDEVDK----LAINELFEVALNESKSSPLIVFVKDIE 714 (1163)
Q Consensus 642 ~kvgV~Fd~~~~~~~~l~~~c--~~-~~~ff~~~~~~~~d~s~~~~~~~----~~l~~l~evl~~e~k~~P~IIffddid 714 (1163)
..-+|.|.+|.|+||+....+ .. +..|+ .. .| .+.|.+..+ ..++.+|+.+.. .++.||||||||
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~-~i--~~--~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~vl~iDEid 134 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFI-KI--CS--PDKMIGFSETAKCQAMKKIFDDAYK---SQLSCVVVDDIE 134 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEE-EE--EC--GGGCTTCCHHHHHHHHHHHHHHHHT---SSEEEEEECCHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEE-EE--eC--HHHhcCCchHHHHHHHHHHHHHHHh---cCCcEEEEEChh
Confidence 446899999999999876211 11 11122 11 12 123433332 345555555433 789999999999
Q ss_pred hhhcC-------ChhhHHHHHHHHhcC---CCCEEEEEecccc
Q 001076 715 KSLTG-------NNDAYGALKSKLENL---PSNVVVIGSHTQL 747 (1163)
Q Consensus 715 ~~La~-------~~~~~~~i~s~L~~L---~g~VivIgs~~~~ 747 (1163)
.++.. +..+...|...+..+ ..+++||+++|++
T Consensus 135 ~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~ 177 (272)
T 1d2n_A 135 RLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRK 177 (272)
T ss_dssp HHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCH
T ss_pred hhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCCh
Confidence 95441 344444444444443 2378899999854
No 196
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.58 E-value=0.025 Score=68.53 Aligned_cols=75 Identities=17% Similarity=0.268 Sum_probs=52.8
Q ss_pred CeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCC--CCCHHHHhccCcEEEecCCCH
Q 001076 1044 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--DLDEAVVRRLPRRLMVNLPDA 1121 (1163)
Q Consensus 1044 PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~--~Ld~aLlrRFd~vI~I~~Pd~ 1121 (1163)
+-+|+|||+..|+.... ......+..+...- ....|-+|.+|.+|. .++..++.-|..+|.+...+.
T Consensus 344 ~ivvVIDE~~~L~~~~~-----~~~~~~L~~Iar~G------Ra~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~ 412 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVG-----KKVEELIARIAQKA------RAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSK 412 (574)
T ss_dssp EEEEEESCCTTHHHHTC-----HHHHHHHHHHHHHC------TTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCH
T ss_pred cEEEEEeCHHHHhhhhh-----HHHHHHHHHHHHHH------hhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCH
Confidence 36899999998863211 12223333343322 225688999998887 889999999999999999998
Q ss_pred HHHHHHHH
Q 001076 1122 PNREKIIR 1129 (1163)
Q Consensus 1122 eeR~eILk 1129 (1163)
.+...|+.
T Consensus 413 ~Dsr~ILd 420 (574)
T 2iut_A 413 IDSRTILD 420 (574)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 88877763
No 197
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.57 E-value=0.0089 Score=68.44 Aligned_cols=75 Identities=27% Similarity=0.339 Sum_probs=49.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccccc----ccc------------chHHHHHHHHHHHhccC
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----WFG------------EGEKYVKAVFSLASKIA 1043 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~----~~G------------e~E~~Ir~lF~~A~k~~ 1043 (1163)
+..-++|+|+||+|||+||..+|..+ +.+++.++....... ..| ..+.....+-..++...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~ 141 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 141 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccC
Confidence 33568999999999999999998765 678888887432110 011 11222222222334567
Q ss_pred CeEEEEcccccccc
Q 001076 1044 PSVVFVDEVDSMLG 1057 (1163)
Q Consensus 1044 PsILfIDEID~L~g 1057 (1163)
+.+|+||.+..|..
T Consensus 142 ~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 142 VDVIVVDSVAALTP 155 (356)
T ss_dssp CSEEEEECGGGCCC
T ss_pred CCEEEEcCHHHhcc
Confidence 89999999998863
No 198
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.56 E-value=0.023 Score=68.13 Aligned_cols=165 Identities=13% Similarity=0.040 Sum_probs=90.7
Q ss_pred cCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH----HhC--CcE-EEEeccccc---
Q 001076 952 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT----EAG--ANF-INISMSSIT--- 1021 (1163)
Q Consensus 952 ~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~----eLg--~pf-i~Id~seL~--- 1021 (1163)
+|.+..++.|.+.+... . ....+-|.|+|+.|+|||+||+.+++ ... +.. +.++.+...
T Consensus 131 ~GR~~~~~~l~~~L~~~---------~--~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~ 199 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---------C--DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKS 199 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---------T--TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTH
T ss_pred CCchHHHHHHHHHHhcc---------c--CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCC
Confidence 49999999998887421 0 11235689999999999999999997 232 221 233333210
Q ss_pred ---------ccccc--------c----hHHHHHHHHHHHhcc-CCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHh
Q 001076 1022 ---------SKWFG--------E----GEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1079 (1163)
Q Consensus 1022 ---------s~~~G--------e----~E~~Ir~lF~~A~k~-~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~L 1079 (1163)
..... . ....+...+...-.. +..+|+||+++.. .. + .+.
T Consensus 200 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~----------~~---~--~~~--- 261 (549)
T 2a5y_B 200 TFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE----------ET---I--RWA--- 261 (549)
T ss_dssp HHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH----------HH---H--HHH---
T ss_pred HHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc----------hh---h--ccc---
Confidence 00000 0 011122333333334 3799999999743 11 1 111
Q ss_pred cCCcccCCCCEEEEEEeCCCCCCCHHHHhccCcEEEecCCCHHHHHHHHHHHHhhCCCCCh--hhHHHHHHHcCCC
Q 001076 1080 DGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASD--VDLEGIANMADGY 1153 (1163)
Q Consensus 1080 dgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~~Pd~eeR~eILk~ll~k~~l~~d--vdl~~LA~~TeGy 1153 (1163)
.. ....||.||........ .......+.++..+.++-.++|...........+ .....|++.+.|.
T Consensus 262 -~~-----~gs~ilvTTR~~~v~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~Gl 329 (549)
T 2a5y_B 262 -QE-----LRLRCLVTTRDVEISNA--ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN 329 (549)
T ss_dssp -HH-----TTCEEEEEESBGGGGGG--CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC
T ss_pred -cc-----CCCEEEEEcCCHHHHHH--cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCC
Confidence 10 23467788865322110 0012246888899999988888887433221111 1356677777764
No 199
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.55 E-value=0.012 Score=63.15 Aligned_cols=70 Identities=17% Similarity=0.145 Sum_probs=43.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc-------cccccccch-----HHHHHHHHHHHhc----cCCe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS-------ITSKWFGEG-----EKYVKAVFSLASK----IAPS 1045 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~se-------L~s~~~Ge~-----E~~Ir~lF~~A~k----~~Ps 1045 (1163)
.-++++|++|+|||+++..++..+ |..++.+.... +.+. .|.. -.....++..+.. ..+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 347999999999999998888776 56666653211 1111 1110 0112345555544 3578
Q ss_pred EEEEcccccc
Q 001076 1046 VVFVDEVDSM 1055 (1163)
Q Consensus 1046 ILfIDEID~L 1055 (1163)
+|+|||+..+
T Consensus 92 vViIDEaQ~l 101 (223)
T 2b8t_A 92 VIGIDEVQFF 101 (223)
T ss_dssp EEEECSGGGS
T ss_pred EEEEecCccC
Confidence 9999999865
No 200
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.54 E-value=0.0045 Score=72.76 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001076 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eL 1008 (1163)
.+||.|+||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998877
No 201
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.50 E-value=0.0078 Score=68.22 Aligned_cols=75 Identities=20% Similarity=0.240 Sum_probs=49.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecccccc--------cccc----------------chH
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITS--------KWFG----------------EGE 1029 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL---------g~pfi~Id~seL~s--------~~~G----------------e~E 1029 (1163)
+..-++|+||||+|||+||..+|... +..+++++....+. ..+| ..+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e 200 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSE 200 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHH
Confidence 33458999999999999999999873 45677787654211 0000 111
Q ss_pred ---HHHHHHHHHHhc--cCCeEEEEcccccccc
Q 001076 1030 ---KYVKAVFSLASK--IAPSVVFVDEVDSMLG 1057 (1163)
Q Consensus 1030 ---~~Ir~lF~~A~k--~~PsILfIDEID~L~g 1057 (1163)
..+..+...+.. ..+.+|+||.+..|+.
T Consensus 201 ~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 201 HQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp HHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 122233444555 6789999999999874
No 202
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.49 E-value=0.0041 Score=84.35 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=55.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccccc----cc--------chHHHHHHHHHHHhc----
Q 001076 981 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW----FG--------EGEKYVKAVFSLASK---- 1041 (1163)
Q Consensus 981 ~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s~~----~G--------e~E~~Ir~lF~~A~k---- 1041 (1163)
..+..-++|+|+||+|||+||..+|..+ +.+++.++.......+ +| ..+..+..++..+++
T Consensus 729 l~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~ 808 (2050)
T 3cmu_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 808 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhc
Confidence 3455679999999999999999999877 5579999886644332 22 112234455554443
Q ss_pred cCCeEEEEcccccccc
Q 001076 1042 IAPSVVFVDEVDSMLG 1057 (1163)
Q Consensus 1042 ~~PsILfIDEID~L~g 1057 (1163)
..|++||||.|..+..
T Consensus 809 ~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 809 GAVDVIVVDSVAALTP 824 (2050)
T ss_dssp TCCSEEEESCGGGCCC
T ss_pred cCCCEEEEcchhhhcc
Confidence 6899999999999874
No 203
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.48 E-value=0.0049 Score=69.20 Aligned_cols=75 Identities=24% Similarity=0.312 Sum_probs=50.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecccccc--------cccc----------------chH
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITS--------KWFG----------------EGE 1029 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL---------g~pfi~Id~seL~s--------~~~G----------------e~E 1029 (1163)
+..-++|+||||+|||+||..+|... +..++.++....+. ..+| ..+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 33568999999999999999999875 55778887654210 0000 112
Q ss_pred ---HHHHHHHHHHhc-cCCeEEEEcccccccc
Q 001076 1030 ---KYVKAVFSLASK-IAPSVVFVDEVDSMLG 1057 (1163)
Q Consensus 1030 ---~~Ir~lF~~A~k-~~PsILfIDEID~L~g 1057 (1163)
..+..+...+.+ ..+.+|+||.+..++.
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 123344445555 6789999999998863
No 204
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.38 E-value=0.0018 Score=67.08 Aligned_cols=33 Identities=39% Similarity=0.533 Sum_probs=29.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
...|+|.|++|+|||++++.||..++++++..|
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 357999999999999999999999999987654
No 205
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.37 E-value=0.0019 Score=72.60 Aligned_cols=125 Identities=10% Similarity=0.080 Sum_probs=72.5
Q ss_pred CCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCcccc
Q 001076 704 SPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRL 783 (1163)
Q Consensus 704 ~P~IIffddid~~La~~~~~~~~i~s~L~~L~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~ 783 (1163)
.|.||||||+|. |. .+..+.|...|+.....+++|++...... + +.... + .|+.+.
T Consensus 189 ~~~vl~IDEi~~-l~--~~~~~~L~~~le~~~~~~~ii~t~~~~~~-----------i---~~t~~---~--~~~~l~-- 244 (368)
T 3uk6_A 189 IPGVLFIDEVHM-LD--IESFSFLNRALESDMAPVLIMATNRGITR-----------I---RGTSY---Q--SPHGIP-- 244 (368)
T ss_dssp CBCEEEEESGGG-SB--HHHHHHHHHHTTCTTCCEEEEEESCSEEE-----------C---BTSSC---E--EETTCC--
T ss_pred cCceEEEhhccc-cC--hHHHHHHHHHhhCcCCCeeeeecccceee-----------e---eccCC---C--CcccCC--
Confidence 388999999999 43 34555666677766667777766542110 0 00000 0 011111
Q ss_pred ccccccchHHHHHhhhccccceeecCCchhHHHHHHHHHHHHhhhhhhccchhhHHHhhhhcCCCCcccccchhhcccCC
Q 001076 784 HDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTL 863 (1163)
Q Consensus 784 ~~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~LpdlkgR~~Il~IHT~l~~~~L~~vdLeeLa~~tkg~ 863 (1163)
.+|-.+|.. |.+++|.++.+...+.+.+.. ....+++..++.++..+.+.
T Consensus 245 -----------~~l~sR~~~-i~~~~~~~~e~~~il~~~~~~------------------~~~~~~~~~l~~l~~~~~~G 294 (368)
T 3uk6_A 245 -----------IDLLDRLLI-VSTTPYSEKDTKQILRIRCEE------------------EDVEMSEDAYTVLTRIGLET 294 (368)
T ss_dssp -----------HHHHTTEEE-EEECCCCHHHHHHHHHHHHHH------------------TTCCBCHHHHHHHHHHHHHS
T ss_pred -----------HHHHhhccE-EEecCCCHHHHHHHHHHHHHH------------------cCCCCCHHHHHHHHHHhcCC
Confidence 235555554 788888877776544332211 12234556667777776645
Q ss_pred chhhhhhHHhHHhhhhhhh
Q 001076 864 TTEGVEKIVGWALSHHFMH 882 (1163)
Q Consensus 864 sgadIe~Lv~~Aas~Al~r 882 (1163)
+..++..+|..|+..|..+
T Consensus 295 ~~r~~~~ll~~a~~~A~~~ 313 (368)
T 3uk6_A 295 SLRYAIQLITAASLVCRKR 313 (368)
T ss_dssp CHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 6677888999988888653
No 206
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.33 E-value=0.0023 Score=63.61 Aligned_cols=31 Identities=29% Similarity=0.222 Sum_probs=28.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
-|+|.|++|+|||++++.|++.++++++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5899999999999999999999999887655
No 207
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.33 E-value=0.017 Score=60.81 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=25.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHH--HH--hCCcEEEEec
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVA--TE--AGANFINISM 1017 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA--~e--Lg~pfi~Id~ 1017 (1163)
+..-+.|.||+|+|||+|++.++ .. .+...+.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 33568999999999999999988 33 2444444443
No 208
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.31 E-value=0.01 Score=67.19 Aligned_cols=73 Identities=14% Similarity=0.139 Sum_probs=47.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecccccc----cc------------ccchHHHHHHHHHH---Hhc
Q 001076 986 GILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS----KW------------FGEGEKYVKAVFSL---ASK 1041 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eL-----g~pfi~Id~seL~s----~~------------~Ge~E~~Ir~lF~~---A~k 1041 (1163)
-++|+||||+|||+|+-.++..+ +..++.++..+-.. .. ....++..-.+... .+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 58999999999999988776544 56788888754211 00 11223320112222 355
Q ss_pred cCCeEEEEccccccccC
Q 001076 1042 IAPSVVFVDEVDSMLGR 1058 (1163)
Q Consensus 1042 ~~PsILfIDEID~L~g~ 1058 (1163)
..|.+|+||-|..|+.+
T Consensus 110 ~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 110 GEKVVVFIDSLGNLASK 126 (333)
T ss_dssp TCCEEEEEECSTTCBCC
T ss_pred cCceEEEEecccccccc
Confidence 67999999999999853
No 209
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.27 E-value=0.016 Score=60.85 Aligned_cols=35 Identities=31% Similarity=0.486 Sum_probs=26.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~ 1017 (1163)
+..-++|.||||+|||+|+..+|... +..++.++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 33568999999999999998887654 566666654
No 210
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.23 E-value=0.0022 Score=65.02 Aligned_cols=31 Identities=26% Similarity=0.615 Sum_probs=28.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
.|+|.|+||+|||++|+.|++.+|++++..|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 5999999999999999999999999987654
No 211
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.21 E-value=0.046 Score=65.50 Aligned_cols=75 Identities=16% Similarity=0.269 Sum_probs=49.9
Q ss_pred eEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCC--CCCHHHHhccCcEEEecCCCHH
Q 001076 1045 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--DLDEAVVRRLPRRLMVNLPDAP 1122 (1163)
Q Consensus 1045 sILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~--~Ld~aLlrRFd~vI~I~~Pd~e 1122 (1163)
-+|+|||...|+.. .......++..+...-. ...+-+|.+|.++. .++..++..|..+|.+...+..
T Consensus 299 ivlvIDE~~~ll~~-----~~~~~~~~l~~Lar~gR------a~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~ 367 (512)
T 2ius_A 299 IVVLVDEFADLMMT-----VGKKVEELIARLAQKAR------AAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKI 367 (512)
T ss_dssp EEEEEETHHHHHHH-----HHHHHHHHHHHHHHHCG------GGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHH
T ss_pred EEEEEeCHHHHHhh-----hhHHHHHHHHHHHHHhh------hCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHH
Confidence 38999999877521 11122223333322211 13577788888776 6888888899999999999988
Q ss_pred HHHHHHHH
Q 001076 1123 NREKIIRV 1130 (1163)
Q Consensus 1123 eR~eILk~ 1130 (1163)
+...|+..
T Consensus 368 dsr~ilg~ 375 (512)
T 2ius_A 368 DSRTILDQ 375 (512)
T ss_dssp HHHHHHSS
T ss_pred HHHHhcCC
Confidence 88877653
No 212
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.18 E-value=0.017 Score=60.09 Aligned_cols=26 Identities=35% Similarity=0.383 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
+..-+.|.||+|+|||+|++.|+...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 33568999999999999999999754
No 213
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.18 E-value=0.0023 Score=64.58 Aligned_cols=31 Identities=32% Similarity=0.571 Sum_probs=27.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
.|+|.|+||+|||++|+.||+.++++|+..|
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEccc
Confidence 5899999999999999999999998887543
No 214
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.18 E-value=0.0027 Score=64.27 Aligned_cols=32 Identities=47% Similarity=0.838 Sum_probs=28.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
..|+|+|+||+|||++++.|++.++++++..+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 56999999999999999999999998887553
No 215
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.15 E-value=0.031 Score=65.84 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=51.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc--------------------ccccchHHHHHHHHHHH
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS--------------------KWFGEGEKYVKAVFSLA 1039 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s--------------------~~~Ge~E~~Ir~lF~~A 1039 (1163)
++.-|++.|++|+|||+++..||..+ |..+..+++..... .....+...+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999998877 66776666543210 01123344556677777
Q ss_pred hccCCeEEEEcccccc
Q 001076 1040 SKIAPSVVFVDEVDSM 1055 (1163)
Q Consensus 1040 ~k~~PsILfIDEID~L 1055 (1163)
......+|+||...++
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7777899999988654
No 216
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.12 E-value=0.014 Score=62.85 Aligned_cols=38 Identities=32% Similarity=0.355 Sum_probs=32.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1020 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL 1020 (1163)
.+..++|.|+||+|||++|+.|+..++..++.++...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 34679999999999999999999999877777776554
No 217
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.12 E-value=0.0029 Score=63.35 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=29.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
..|+|.|++|+|||++++.||..+|++|+..|
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 46999999999999999999999999987654
No 218
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.10 E-value=0.0031 Score=64.01 Aligned_cols=32 Identities=34% Similarity=0.460 Sum_probs=28.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
.-|+|.|+||+|||++++.|+..++++++..|
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D 37 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLPLLSKD 37 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEecHH
Confidence 56899999999999999999999998877643
No 219
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.09 E-value=0.015 Score=67.67 Aligned_cols=76 Identities=22% Similarity=0.265 Sum_probs=47.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecccccc--------ccccc----------------h-
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITS--------KWFGE----------------G- 1028 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL---------g~pfi~Id~seL~s--------~~~Ge----------------~- 1028 (1163)
+..-++|+||+|+|||+|+..++-.. +...++++...... ..+|- .
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCChH
Confidence 33568999999999999999876443 23477777654210 00110 0
Q ss_pred --HHHHHHHHHHHhccCCeEEEEccccccccC
Q 001076 1029 --EKYVKAVFSLASKIAPSVVFVDEVDSMLGR 1058 (1163)
Q Consensus 1029 --E~~Ir~lF~~A~k~~PsILfIDEID~L~g~ 1058 (1163)
...+..+...+....|.+|+||++-.++..
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 112233344445568999999999988753
No 220
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.06 E-value=0.00038 Score=83.83 Aligned_cols=50 Identities=20% Similarity=0.377 Sum_probs=26.7
Q ss_pred Hhhcc-CCCeEEEEcchhhhhcC-ChhhHHHHHHHHhcCC---------------CCEEEEEeccccc
Q 001076 698 LNESK-SSPLIVFVKDIEKSLTG-NNDAYGALKSKLENLP---------------SNVVVIGSHTQLD 748 (1163)
Q Consensus 698 ~~e~k-~~P~IIffddid~~La~-~~~~~~~i~s~L~~L~---------------g~VivIgs~~~~d 748 (1163)
+..+. .+| ||||||||.+... +.+..+.|...|+... .++++|+++|+.+
T Consensus 169 ~~~a~~~~~-vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~ 235 (543)
T 3m6a_A 169 MKKAGKLNP-VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLA 235 (543)
T ss_dssp HHTTCSSSE-EEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTT
T ss_pred HHHhhccCC-EEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccc
Confidence 34444 566 9999999994332 3333333333333211 5689999998543
No 221
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.01 E-value=0.0032 Score=64.46 Aligned_cols=32 Identities=41% Similarity=0.713 Sum_probs=28.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH-hCCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATE-AGANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~e-Lg~pfi~Id 1016 (1163)
..|+|+|++|+|||++++.++.. +|++++.+|
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 56999999999999999999999 788776554
No 222
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.96 E-value=0.0034 Score=62.65 Aligned_cols=31 Identities=26% Similarity=0.558 Sum_probs=27.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
.|+|.|++|+|||++|+.|++.++++++..|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 5899999999999999999999998877543
No 223
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.96 E-value=0.0033 Score=61.99 Aligned_cols=29 Identities=45% Similarity=0.690 Sum_probs=26.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
-|+|.|+||+|||++|+.| +.+|++++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5899999999999999999 8889987764
No 224
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.96 E-value=0.0039 Score=65.40 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=28.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
+..|+|.|+||+|||++|+.||+.++++++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 35799999999999999999999999877654
No 225
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.96 E-value=0.0038 Score=63.17 Aligned_cols=31 Identities=19% Similarity=0.422 Sum_probs=27.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
.-|+|.|+||+|||++|+.|++.++++++..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 5689999999999999999999999877654
No 226
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.95 E-value=0.0043 Score=64.05 Aligned_cols=32 Identities=38% Similarity=0.601 Sum_probs=28.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
..|+|+|+||+|||++|+.|++.++++++.++
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 45999999999999999999999999876653
No 227
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.95 E-value=0.0041 Score=67.40 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=29.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~Id~ 1017 (1163)
-++|.||+|+|||+||++||..++.+++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47999999999999999999999999888774
No 228
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.93 E-value=0.00076 Score=79.69 Aligned_cols=95 Identities=15% Similarity=0.114 Sum_probs=48.1
Q ss_pred CceeeeecCCCCCCCCCCCC-----CCCCCC--cccccccccccC-CCcchhhHHHHHHHHHHHHhhccCCCeEEEEcch
Q 001076 642 SKIGVRFDRSIPEGNNLGGF-----CEDDHG--FFCTASSLRLDS-SLGDEVDKLAINELFEVALNESKSSPLIVFVKDI 713 (1163)
Q Consensus 642 ~kvgV~Fd~~~~~~~~l~~~-----c~~~~~--ff~~~~~~~~d~-s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddi 713 (1163)
.+-.|.|-+|+|+||+.-.. ...+.- .++...-..+|. .+|.|+.+..+..+|+.+.. ..|.|||+|
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~~~~~~~~~~~~---~~~~iLfiD-- 274 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIRQ---AGNIILFID-- 274 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHHHHHHT---CCCCEEEEC--
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHHHHHHHHHHHHh---cCCeEEEEe--
Confidence 34568899999999997611 100000 001111111222 45666666667777776655 689999999
Q ss_pred hhhhcCChhhHHHHHHHHhcCCCCEEEEEeccccc
Q 001076 714 EKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQLD 748 (1163)
Q Consensus 714 d~~La~~~~~~~~i~s~L~~L~g~VivIgs~~~~d 748 (1163)
+..+..+.|+..|. +|+++|||++|..+
T Consensus 275 -----~~~~a~~~L~~~L~--~g~v~vI~at~~~e 302 (468)
T 3pxg_A 275 -----AAIDASNILKPSLA--RGELQCIGATTLDE 302 (468)
T ss_dssp -----C--------CCCTT--SSSCEEEEECCTTT
T ss_pred -----CchhHHHHHHHhhc--CCCEEEEecCCHHH
Confidence 33444444444443 88999999999644
No 229
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.91 E-value=0.073 Score=59.63 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=45.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-------cc-------------ccchHHHHHHHHHHH
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------KW-------------FGEGEKYVKAVFSLA 1039 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s-------~~-------------~Ge~E~~Ir~lF~~A 1039 (1163)
++.-++|.||+|+|||+++..||..+ +..+..+++..... .| .+.....+...+..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 44568999999999999999998776 55555555422110 01 112222233345555
Q ss_pred hccCCeEEEEccccc
Q 001076 1040 SKIAPSVVFVDEVDS 1054 (1163)
Q Consensus 1040 ~k~~PsILfIDEID~ 1054 (1163)
....+.+|+||+.-.
T Consensus 183 ~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 183 LARNKDVVIIDTAGR 197 (306)
T ss_dssp HHTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCc
Confidence 667789999998853
No 230
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.90 E-value=0.017 Score=63.93 Aligned_cols=36 Identities=39% Similarity=0.506 Sum_probs=29.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~se 1019 (1163)
+.-|+|.||||+|||++|+.++.+++..++.+++..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~ 68 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDT 68 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechH
Confidence 356899999999999999999999855556666533
No 231
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.90 E-value=0.0042 Score=63.15 Aligned_cols=32 Identities=22% Similarity=0.451 Sum_probs=28.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
.-|+|.|+||+|||++|+.|++.++++++..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 56999999999999999999999998876554
No 232
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.89 E-value=0.052 Score=60.68 Aligned_cols=35 Identities=23% Similarity=0.159 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~ 1017 (1163)
+..-++|.|+||+|||+||..+|... +.+++.+++
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 43559999999999999999998665 567777765
No 233
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.80 E-value=0.015 Score=62.97 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=30.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH---hCCcEEEEecccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATE---AGANFINISMSSI 1020 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~e---Lg~pfi~Id~seL 1020 (1163)
.-|+|.|+||+|||++|+.|+.. .|.+++.++...+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 46899999999999999999998 6888887765443
No 234
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.79 E-value=0.0062 Score=60.88 Aligned_cols=30 Identities=30% Similarity=0.695 Sum_probs=26.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~ 1014 (1163)
..|.|.||+|+|||++++.||..++.+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 469999999999999999999999987654
No 235
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.74 E-value=0.0049 Score=61.29 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=27.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
.|+|+|++|+|||++|+.|++.++++++..|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 4899999999999999999999999887544
No 236
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.70 E-value=0.0065 Score=62.70 Aligned_cols=33 Identities=30% Similarity=0.524 Sum_probs=28.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
+.-|+|.|++|+|||++|+.|+..+|+.++..|
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 356999999999999999999999998776543
No 237
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.69 E-value=0.032 Score=59.76 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
.+||+||+|+|||.+|.+++..++..++.+-
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~ 140 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVV 140 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 5999999999999999999988877666654
No 238
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.69 E-value=0.0053 Score=62.58 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=28.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
.-|+|.|+||+|||++|+.|++.++++++..+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 44 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTG 44 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 46999999999999999999999997766543
No 239
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.67 E-value=0.028 Score=63.90 Aligned_cols=37 Identities=30% Similarity=0.336 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 1019 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL---------g~pfi~Id~se 1019 (1163)
+..-++|+||+|+|||+|+..++... +-.+++++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 33558999999999999999999876 23557777643
No 240
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.64 E-value=0.13 Score=60.45 Aligned_cols=73 Identities=19% Similarity=0.098 Sum_probs=48.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc----------ccc----------ccchHHHHHHHHHHH
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----------SKW----------FGEGEKYVKAVFSLA 1039 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~----------s~~----------~Ge~E~~Ir~lF~~A 1039 (1163)
++.-++|.||+|+|||+++..||..+ |..+..+++.... ... ...+..........+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 34668999999999999999998776 6666665543211 000 011233344556666
Q ss_pred hccCCeEEEEcccccc
Q 001076 1040 SKIAPSVVFVDEVDSM 1055 (1163)
Q Consensus 1040 ~k~~PsILfIDEID~L 1055 (1163)
.+..+.+|+||...++
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 6677899999998654
No 241
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.63 E-value=0.0054 Score=63.88 Aligned_cols=31 Identities=26% Similarity=0.527 Sum_probs=27.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
.|+|+|+||+|||++|+.|++.++++++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHH
Confidence 4899999999999999999999998877653
No 242
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.62 E-value=0.22 Score=59.38 Aligned_cols=50 Identities=22% Similarity=0.280 Sum_probs=39.0
Q ss_pred ccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEeccCCC
Q 001076 480 NFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP 531 (1163)
Q Consensus 480 ~~~k~~~~l~~~s~rILLsgpagsE~Yqe~LaKALA~~f~a~LLilDs~~~~ 531 (1163)
.+.+.+.+-.+..+.|||+||+| .-..+||+|||+.++.+++.++.+++.
T Consensus 65 ~~~~~g~~~~~~~~~lLL~GppG--tGKTtla~~la~~l~~~~i~in~s~~~ 114 (516)
T 1sxj_A 65 SFKHAGKDGSGVFRAAMLYGPPG--IGKTTAAHLVAQELGYDILEQNASDVR 114 (516)
T ss_dssp TTCCCCTTSTTSCSEEEEECSTT--SSHHHHHHHHHHHTTCEEEEECTTSCC
T ss_pred hccccCccCCCCCcEEEEECCCC--CCHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 34445544445668999999999 689999999999999998888875543
No 243
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.62 E-value=0.0058 Score=61.65 Aligned_cols=32 Identities=19% Similarity=0.426 Sum_probs=28.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
.-|+|.|+||+|||++|+.|++.++++++..+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 38 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSAG 38 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeHH
Confidence 46899999999999999999999998776553
No 244
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.61 E-value=0.0058 Score=63.57 Aligned_cols=31 Identities=29% Similarity=0.475 Sum_probs=27.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
.|+|.|+||+|||++|+.|++.++++++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHH
Confidence 4899999999999999999999998887653
No 245
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.61 E-value=0.0075 Score=61.01 Aligned_cols=31 Identities=32% Similarity=0.654 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
..|+|.|+||+|||++++.|++.++++++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 4589999999999999999999999877654
No 246
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.61 E-value=0.035 Score=65.17 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 1017 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL----g~pfi~Id~ 1017 (1163)
+..-++|.|+||+|||+|+..+|..+ |.+++.++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 44568999999999999999987654 567877775
No 247
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.60 E-value=0.057 Score=56.61 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=26.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH----hCCcEEEEec
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATE----AGANFINISM 1017 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~e----Lg~pfi~Id~ 1017 (1163)
+..-++|+|+||+|||+||..+|.. .+.+++.++.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 3345899999999999999887643 2667777664
No 248
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.58 E-value=0.017 Score=66.09 Aligned_cols=69 Identities=17% Similarity=0.244 Sum_probs=45.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc-ccc---------cccccchHHHHHHHHHHHhccCCeEEEEc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMS-SIT---------SKWFGEGEKYVKAVFSLASKIAPSVVFVD 1050 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL----g~pfi~Id~s-eL~---------s~~~Ge~E~~Ir~lF~~A~k~~PsILfID 1050 (1163)
.-++|.||+|+|||+|.++++..+ +..++.+.-+ ++. ....+.....+...+..|-...|.||++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 358999999999999999998776 3344443211 111 01111111234456777788999999999
Q ss_pred ccc
Q 001076 1051 EVD 1053 (1163)
Q Consensus 1051 EID 1053 (1163)
|+-
T Consensus 204 Ep~ 206 (356)
T 3jvv_A 204 EMR 206 (356)
T ss_dssp CCC
T ss_pred CCC
Confidence 994
No 249
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.58 E-value=0.0053 Score=61.97 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=26.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-----CcEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG-----ANFIN 1014 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg-----~pfi~ 1014 (1163)
.-|+|.|+||+|||++++.|+..++ ++++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 4689999999999999999999987 66553
No 250
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.57 E-value=0.007 Score=64.28 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=28.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
..|+|.|+||+|||++|+.||+.++++++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 5699999999999999999999999887665
No 251
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.56 E-value=0.054 Score=56.40 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001076 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eL 1008 (1163)
.+.|.||+|+|||+|++.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48899999999999999999876
No 252
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.54 E-value=0.006 Score=64.33 Aligned_cols=31 Identities=19% Similarity=0.434 Sum_probs=28.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
..|+|.|+||+|||++|+.|++.++++++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 5699999999999999999999999887654
No 253
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.51 E-value=0.0074 Score=62.13 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=28.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
.-|+|.|++|+|||++++.|++.++++++..+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 46899999999999999999999998776554
No 254
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.51 E-value=0.0074 Score=64.85 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=29.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
++..|+|+||||+|||++|+.|++.++++++..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecH
Confidence 4467999999999999999999999988776553
No 255
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.49 E-value=0.018 Score=64.21 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=48.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---------------C----CcEEEEeccccc-cc-------ccc----------
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA---------------G----ANFINISMSSIT-SK-------WFG---------- 1026 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL---------------g----~pfi~Id~seL~-s~-------~~G---------- 1026 (1163)
..-++|+||||+|||+||..+|... | ..+++++...-+ .. .+|
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l 177 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNT 177 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHTE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcCE
Confidence 3458999999999999999998763 2 567777765421 00 000
Q ss_pred ------chH---HHHHHHHHHHhc-cCCeEEEEcccccccc
Q 001076 1027 ------EGE---KYVKAVFSLASK-IAPSVVFVDEVDSMLG 1057 (1163)
Q Consensus 1027 ------e~E---~~Ir~lF~~A~k-~~PsILfIDEID~L~g 1057 (1163)
..+ ..+..+.....+ ..+.+|+||.+..|+.
T Consensus 178 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 178 FVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp EEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 111 122334444555 6689999999998863
No 256
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.46 E-value=0.007 Score=60.95 Aligned_cols=29 Identities=31% Similarity=0.440 Sum_probs=23.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFI 1013 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi 1013 (1163)
.-|+|.|+||+|||++|+.|++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46899999999999999999999999887
No 257
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.46 E-value=0.055 Score=58.93 Aligned_cols=24 Identities=38% Similarity=0.476 Sum_probs=21.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
.-++|+||+|+|||+|+..++..+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998654
No 258
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.45 E-value=0.05 Score=63.63 Aligned_cols=36 Identities=28% Similarity=0.340 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 1018 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL----g~pfi~Id~s 1018 (1163)
+..-++|.|+||+|||+||..+|... |.+++.+++.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 44558999999999999999887654 5678777753
No 259
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.41 E-value=0.0073 Score=60.37 Aligned_cols=30 Identities=40% Similarity=0.550 Sum_probs=24.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHH-HhCCcEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVAT-EAGANFIN 1014 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~-eLg~pfi~ 1014 (1163)
.-|+|.|+||+|||++|+.|++ .+++.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 4589999999999999999998 45554443
No 260
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.41 E-value=0.0096 Score=59.81 Aligned_cols=30 Identities=33% Similarity=0.553 Sum_probs=26.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~ 1014 (1163)
..++|.|++|+|||++++.|+..+|..++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 568999999999999999999999876654
No 261
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.40 E-value=0.0069 Score=63.62 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=28.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
..|+|.|+||+|||++|+.||+.++++++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4699999999999999999999999887765
No 262
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.36 E-value=0.013 Score=59.30 Aligned_cols=32 Identities=28% Similarity=0.132 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001076 986 GILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~ 1017 (1163)
-|.|+|++|+|||++++.|++.+ |++++..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 37899999999999999999998 999988763
No 263
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.36 E-value=0.064 Score=58.75 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=26.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 1017 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL----g~pfi~Id~ 1017 (1163)
+..-++|.||||+|||+|++.||..+ |.+++.++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 33568999999999999999998765 445655543
No 264
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.33 E-value=0.0086 Score=60.84 Aligned_cols=37 Identities=30% Similarity=0.498 Sum_probs=31.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1020 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~seL 1020 (1163)
..-+.|.||+|+|||+|++.|+...+...+.++..++
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 3568999999999999999999988778888876543
No 265
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.32 E-value=0.011 Score=71.84 Aligned_cols=32 Identities=41% Similarity=0.486 Sum_probs=26.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id 1016 (1163)
..++|+|+||||||+++.+++..+ +..++.+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 468999999999999999998765 66665543
No 266
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.25 E-value=0.097 Score=55.20 Aligned_cols=116 Identities=17% Similarity=0.170 Sum_probs=69.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc---------ccccc-----------cc-c-----hHHHHHHHH
Q 001076 986 GILLFGPPGTGKTMLAKAVATEA---GANFINISMSS---------ITSKW-----------FG-E-----GEKYVKAVF 1036 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~se---------L~s~~-----------~G-e-----~E~~Ir~lF 1036 (1163)
.|++++++|.|||++|-++|.++ |..+..+..-. ++..+ .- . .+......+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 59999999999999999998776 77776663211 22221 00 0 123445555
Q ss_pred HHHhcc----CCeEEEEccccccccCCCCcchHHHHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCCHHHHhccCc
Q 001076 1037 SLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPR 1112 (1163)
Q Consensus 1037 ~~A~k~----~PsILfIDEID~L~g~r~s~~~~eal~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~ 1112 (1163)
..+++. ...+|+|||+-..+.-..-+ ..+++..+.. .+...-||.|+|.+ +++++..-|.
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~l~---------~~ev~~~l~~----Rp~~~~vIlTGr~a---p~~l~e~AD~ 173 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDYLP---------LEEVISALNA----RPGHQTVIITGRGC---HRDILDLADT 173 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSSC---------HHHHHHHHHT----SCTTCEEEEECSSC---CHHHHHHCSE
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCCCC---------HHHHHHHHHh----CcCCCEEEEECCCC---cHHHHHhCcc
Confidence 555543 46899999996532111110 1122223322 23567888899874 5677776666
Q ss_pred EEEec
Q 001076 1113 RLMVN 1117 (1163)
Q Consensus 1113 vI~I~ 1117 (1163)
+-++.
T Consensus 174 VTem~ 178 (196)
T 1g5t_A 174 VSELR 178 (196)
T ss_dssp EEECC
T ss_pred eeeec
Confidence 65554
No 267
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.23 E-value=0.0068 Score=63.61 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
..|+|.|+||+|||++++.||+.++.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 5699999999999999999999999866543
No 268
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.21 E-value=0.0095 Score=62.23 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
.|+|.|+||+|||++|+.|++.++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999999887665
No 269
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.19 E-value=0.011 Score=67.90 Aligned_cols=30 Identities=23% Similarity=0.551 Sum_probs=27.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~ 1014 (1163)
..++|.|++|+|||+++++||..++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 469999999999999999999999988844
No 270
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.18 E-value=0.018 Score=58.18 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=31.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~se 1019 (1163)
..-|.|+|++|+|||++++.++..+ |++++.++...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 3568999999999999999999988 99999888543
No 271
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.09 E-value=0.014 Score=61.63 Aligned_cols=29 Identities=41% Similarity=0.678 Sum_probs=26.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~ 1014 (1163)
.|+|.||||+||++.|+.||+.+|++.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 47899999999999999999999987654
No 272
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.04 E-value=0.018 Score=59.59 Aligned_cols=31 Identities=35% Similarity=0.686 Sum_probs=26.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eLg~pfi~ 1014 (1163)
..-+.|.||+|+|||+|++.|+..+|..++.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 3569999999999999999999999765543
No 273
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.03 E-value=0.098 Score=61.49 Aligned_cols=37 Identities=24% Similarity=0.181 Sum_probs=29.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001076 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1163)
Q Consensus 982 ~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~s 1018 (1163)
.+..-++|.|+||+|||+||..+|... |.++..+++.
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 344559999999999999999987665 6788877653
No 274
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.00 E-value=0.014 Score=65.99 Aligned_cols=34 Identities=35% Similarity=0.556 Sum_probs=30.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 1018 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~s 1018 (1163)
+.|+|.||+|+|||+||..||+.++..++.+|.-
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 4689999999999999999999999999988753
No 275
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.99 E-value=0.083 Score=62.65 Aligned_cols=36 Identities=11% Similarity=0.047 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 1018 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL----g~pfi~Id~s 1018 (1163)
+..-++|.|+||+|||+||..+|... |.+++.++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 33568999999999999999998765 5577777753
No 276
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.99 E-value=0.017 Score=61.65 Aligned_cols=31 Identities=26% Similarity=0.465 Sum_probs=27.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eLg~pfi~ 1014 (1163)
++-|+|.||||+||++.|+.|++.++++.+.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 3568899999999999999999999887653
No 277
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.97 E-value=0.035 Score=60.71 Aligned_cols=69 Identities=26% Similarity=0.383 Sum_probs=42.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecc-c-cc--------cccccchHHHHHHHHHHHhccCCeEEEEc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG----ANFINISMS-S-IT--------SKWFGEGEKYVKAVFSLASKIAPSVVFVD 1050 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg----~pfi~Id~s-e-L~--------s~~~Ge~E~~Ir~lF~~A~k~~PsILfID 1050 (1163)
.-++|.||+|+|||+|+++++..+. -.++...-+ + +. ...+|.....++..+..+-...|.+|++|
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illlD 105 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVG 105 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEES
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEeC
Confidence 4689999999999999999987652 223222211 0 00 00111111233555666666789999999
Q ss_pred ccc
Q 001076 1051 EVD 1053 (1163)
Q Consensus 1051 EID 1053 (1163)
|+-
T Consensus 106 Ep~ 108 (261)
T 2eyu_A 106 EMR 108 (261)
T ss_dssp CCC
T ss_pred CCC
Confidence 983
No 278
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.89 E-value=0.017 Score=58.93 Aligned_cols=29 Identities=24% Similarity=0.578 Sum_probs=26.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~ 1014 (1163)
.|.|.|++|+|||++++.|++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 48899999999999999999999987654
No 279
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.82 E-value=0.023 Score=57.77 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=27.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001076 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA~eL---g~pfi~Id~ 1017 (1163)
|.|.|++|+|||++++.|++.+ |++++...-
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 7899999999999999999999 999886654
No 280
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.80 E-value=0.036 Score=54.81 Aligned_cols=98 Identities=10% Similarity=0.058 Sum_probs=58.6
Q ss_pred eeeecCCCCCCCCCCC-----C--CC------CCCCcccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEc
Q 001076 645 GVRFDRSIPEGNNLGG-----F--CE------DDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVK 711 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~~-----~--c~------~~~~ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffd 711 (1163)
+|.+-+|.+.||+... . |. .+..+++-.....+....+.+.....++.+++.+.. ..+|.|||||
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vl~iD 122 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAK--QEGNVILFID 122 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHH--STTTEEEEEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhh--cCCCeEEEEe
Confidence 5677788999997651 1 10 111111111011111245666666677777776643 3679999999
Q ss_pred chhhhhcC-----ChhhHHHHHHHHhcCCCCEEEEEeccc
Q 001076 712 DIEKSLTG-----NNDAYGALKSKLENLPSNVVVIGSHTQ 746 (1163)
Q Consensus 712 did~~La~-----~~~~~~~i~s~L~~L~g~VivIgs~~~ 746 (1163)
|+|.+... ..++.+.|...+. .+++++|++++.
T Consensus 123 e~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~~~ 160 (195)
T 1jbk_A 123 ELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTL 160 (195)
T ss_dssp TGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEECH
T ss_pred CHHHHhccCcccchHHHHHHHHHhhc--cCCeEEEEeCCH
Confidence 99995432 3556667776665 567888888874
No 281
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.79 E-value=0.013 Score=60.44 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
.|.|.|++|+|||++++.|+. +|++++..|
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 589999999999999999999 887776654
No 282
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.79 E-value=0.073 Score=54.48 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=19.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
+.+++.+|+|+|||.++..++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999887776543
No 283
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.78 E-value=0.012 Score=59.36 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC---CcEEEEeccc
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAG---ANFINISMSS 1019 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg---~pfi~Id~se 1019 (1163)
-|+|.|+||+|||++++.|++.++ .++..++..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 589999999999999999999885 4455555444
No 284
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.78 E-value=0.019 Score=60.63 Aligned_cols=30 Identities=33% Similarity=0.557 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
.|+|.|+||+|||++++.|++.++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 489999999999999999999999876554
No 285
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.74 E-value=0.02 Score=58.61 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=29.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEec
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA-GANFINISM 1017 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL-g~pfi~Id~ 1017 (1163)
.-|.|.|++|+|||++++.|++.+ |++++.++.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 569999999999999999999998 688887664
No 286
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.73 E-value=0.02 Score=59.68 Aligned_cols=30 Identities=33% Similarity=0.483 Sum_probs=27.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~ 1014 (1163)
..|.|.||+|+|||++++.|+..+|++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468999999999999999999999987764
No 287
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.58 E-value=0.025 Score=58.01 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=28.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
-|.|.|++|+|||++++.||..+|++++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 6899999999999999999999998887654
No 288
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.58 E-value=0.041 Score=63.16 Aligned_cols=71 Identities=25% Similarity=0.355 Sum_probs=44.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecc-cc--------ccc-cccchHHHHHHHHHHHhccCCeEEE
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEAG----ANFINISMS-SI--------TSK-WFGEGEKYVKAVFSLASKIAPSVVF 1048 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eLg----~pfi~Id~s-eL--------~s~-~~Ge~E~~Ir~lF~~A~k~~PsILf 1048 (1163)
+...++|.||+|+|||+++++|+..+. -.++.+..+ ++ ... .+|.....+...+..+....|.+|+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~il 214 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 214 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEE
Confidence 334689999999999999999987662 334333321 10 000 0111112334556666677899999
Q ss_pred Ecccc
Q 001076 1049 VDEVD 1053 (1163)
Q Consensus 1049 IDEID 1053 (1163)
+||+-
T Consensus 215 ldE~~ 219 (372)
T 2ewv_A 215 VGEMR 219 (372)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 99993
No 289
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.52 E-value=0.017 Score=58.92 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=27.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
+..|.|.|++|+|||++++.|++. |++++..|
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 356999999999999999999998 87776544
No 290
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.41 E-value=0.038 Score=56.59 Aligned_cols=32 Identities=19% Similarity=0.074 Sum_probs=26.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc--EEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGAN--FINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~p--fi~Id 1016 (1163)
.-|+|.|+||+|||++|+.|++.++.. ++..+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 38 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTE 38 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEec
Confidence 468999999999999999999998763 55443
No 291
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.39 E-value=0.039 Score=57.01 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=29.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 1020 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL 1020 (1163)
++.-|.|.||+|+|||++++.|+..+ |...+.++...+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 33568999999999999999999988 655556665443
No 292
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.39 E-value=0.02 Score=59.77 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
-|.|+|++|+|||++++.++..+|++++..|
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 4899999999999999999999998887654
No 293
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.36 E-value=0.26 Score=63.59 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=34.2
Q ss_pred cCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 001076 952 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 952 ~Gleevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
+|.+..++.|.+.+.. . ...+-|.|+|+.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~----------~---d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLE----------L---RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHH----------C---CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhc----------c---CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 7899999998887742 0 12356899999999999999999864
No 294
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.32 E-value=0.018 Score=65.53 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=31.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~se 1019 (1163)
+-|+|.||+|+|||+|+..||+.++..++..|.-.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 46899999999999999999999999998887543
No 295
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.31 E-value=0.014 Score=60.06 Aligned_cols=29 Identities=24% Similarity=0.156 Sum_probs=24.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcE
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEAGANF 1012 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eLg~pf 1012 (1163)
+.-|+|+|++|+|||++++.|++.++.++
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 35699999999999999999999885443
No 296
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.26 E-value=0.16 Score=59.41 Aligned_cols=69 Identities=22% Similarity=0.276 Sum_probs=41.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC---cEEEEecc-cccc-----ccccch-HHHHHHHHHHHhccCCeEEEEcccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGA---NFINISMS-SITS-----KWFGEG-EKYVKAVFSLASKIAPSVVFVDEVD 1053 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~---pfi~Id~s-eL~s-----~~~Ge~-E~~Ir~lF~~A~k~~PsILfIDEID 1053 (1163)
.-++|.||+|+|||++.++++..+.. .++.+.-+ ++.- ..+... .-........+-+..|.+|++.||-
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 35899999999999999999988842 34443321 1100 001110 0112334445556789999999863
No 297
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.19 E-value=0.012 Score=65.52 Aligned_cols=117 Identities=15% Similarity=0.181 Sum_probs=64.1
Q ss_pred eeeecCCCCCCCCCCCC--CCCCCCcccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcCChh
Q 001076 645 GVRFDRSIPEGNNLGGF--CEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGNND 722 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~~~--c~~~~~ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~~~~ 722 (1163)
.|.|.+|.|+||+.... +..-..-|......+++ ....+.. .+.. ..++.+|||||||. +. .+
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~-------~~~~~~~---~~~~--~~~~~vl~lDEi~~-l~--~~ 121 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE-------KSGDLAA---ILTN--LSEGDILFIDEIHR-LS--PA 121 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-------SHHHHHH---HHHT--CCTTCEEEEETGGG-CC--HH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc-------chhHHHH---HHHh--ccCCCEEEEechhh-cC--HH
Confidence 58888999999997621 11111123222222211 1112222 2222 25788999999999 43 23
Q ss_pred hHHHHHHHHhcCCC------------------CEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCCccccc
Q 001076 723 AYGALKSKLENLPS------------------NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLH 784 (1163)
Q Consensus 723 ~~~~i~s~L~~L~g------------------~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~~~~~~ 784 (1163)
....|...|+.-.. ++++|+++|+... ++
T Consensus 122 ~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~----------------------l~----------- 168 (338)
T 3pfi_A 122 IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGM----------------------LS----------- 168 (338)
T ss_dssp HHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGG----------------------SC-----------
T ss_pred HHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccc----------------------cC-----------
Confidence 33334444543210 3788888884221 22
Q ss_pred cccccchHHHHHhhhccccceeecCCchhHHHHHH
Q 001076 785 DRSKETPKALKQISRLFPNKVTIQLPQDEALLSDW 819 (1163)
Q Consensus 785 ~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRf 819 (1163)
.+|-.+|...|.+.+|..+.+...+
T Consensus 169 ----------~~L~~R~~~~i~l~~~~~~e~~~il 193 (338)
T 3pfi_A 169 ----------NPLRDRFGMQFRLEFYKDSELALIL 193 (338)
T ss_dssp ----------HHHHTTCSEEEECCCCCHHHHHHHH
T ss_pred ----------HHHHhhcCEEeeCCCcCHHHHHHHH
Confidence 2355567778899999877765433
No 298
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.18 E-value=0.04 Score=59.48 Aligned_cols=31 Identities=32% Similarity=0.472 Sum_probs=27.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eLg~pfi~ 1014 (1163)
...|.|.||+|+|||++++.||+.+|+.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 3468999999999999999999999987763
No 299
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.15 E-value=0.02 Score=59.07 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
-|.|.|++|+|||++++.|+. +|++++..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 578999999999999999998 88887643
No 300
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.05 E-value=0.027 Score=61.32 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=29.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
..|.|.|++|+|||++++.||..+|++|+..+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 47999999999999999999999999887654
No 301
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.04 E-value=0.036 Score=59.17 Aligned_cols=31 Identities=26% Similarity=0.605 Sum_probs=27.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eLg~pfi~ 1014 (1163)
+.-+.|.||+|+|||++++.|++.+|...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 3579999999999999999999999876553
No 302
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.96 E-value=0.04 Score=59.47 Aligned_cols=30 Identities=30% Similarity=0.618 Sum_probs=27.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~ 1014 (1163)
..+.|.||+|+|||++++.|++.++++++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 469999999999999999999999987754
No 303
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.96 E-value=0.019 Score=59.18 Aligned_cols=31 Identities=16% Similarity=0.112 Sum_probs=25.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG---ANFINI 1015 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg---~pfi~I 1015 (1163)
.-|+|+|++|+|||++++.|++.++ +++..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 5699999999999999999999874 454433
No 304
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.90 E-value=0.053 Score=58.21 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=30.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcE--------EEEeccccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANF--------INISMSSIT 1021 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pf--------i~Id~seL~ 1021 (1163)
.-|.|.|++|+|||++|+.|+..+++++ +.+++.++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 4689999999999999999999999873 356766654
No 305
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.77 E-value=0.069 Score=54.20 Aligned_cols=36 Identities=28% Similarity=0.282 Sum_probs=29.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~se 1019 (1163)
..-|+|.|++|+|||++++.++..+ +.++..++...
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 3568999999999999999999887 55566666443
No 306
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=93.68 E-value=0.036 Score=71.21 Aligned_cols=75 Identities=28% Similarity=0.352 Sum_probs=59.2
Q ss_pred CCCCCCccccccCCcccccCCceeeeccCCCCcccCCCCCCCCCcccCeeeeccccCCCCceeeeecCCCCCCCCCCCCC
Q 001076 583 ALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFC 662 (1163)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~p~~g~rg~v~~~~e~n~~~kvgV~Fd~~~~~~~~l~~~c 662 (1163)
+..++..+..-+.+++|.-||||.||..+. .-+.|.||.|+-.--.+..--+-|.||.|.-.|+||++-|
T Consensus 1050 allkP~~a~~~L~~Q~F~LGDRVv~VqdsG----------~VPl~~kGTVVGi~~~~~~~~ldVvFD~~F~~G~tlggrc 1119 (1155)
T 3pie_A 1050 AILNAESSYVLLRSQRFHLGDRVMYIQDSG----------KVPLHSKGTVVGYTSIGKNVSIQVLFDNEIIAGNNFGGRL 1119 (1155)
T ss_pred HeeCHHHhhccccCCcccCCCeEEEecCCC----------CCccccceEEEEEecCCCceEEEEEeccCccCCCcccccc
Confidence 344554455556789999999999998644 2468999999877554545569999999999999999999
Q ss_pred CCCCC
Q 001076 663 EDDHG 667 (1163)
Q Consensus 663 ~~~~~ 667 (1163)
++..|
T Consensus 1120 s~~RG 1124 (1155)
T 3pie_A 1120 QTRRG 1124 (1155)
T ss_pred ccccc
Confidence 98776
No 307
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.68 E-value=0.22 Score=55.39 Aligned_cols=36 Identities=31% Similarity=0.394 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 1018 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL----g~pfi~Id~s 1018 (1163)
++.-++|.||+|+|||+++..||..+ |..+..+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 44679999999999999999998665 5566666653
No 308
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.65 E-value=0.029 Score=55.63 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=43.0
Q ss_pred cchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhh-----c-CChhhHHHHHHHHhcCCCCEEEEEeccc
Q 001076 682 GDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSL-----T-GNNDAYGALKSKLENLPSNVVVIGSHTQ 746 (1163)
Q Consensus 682 ~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~L-----a-~~~~~~~~i~s~L~~L~g~VivIgs~~~ 746 (1163)
+.+.....++.+++.+... .+|.||||||+|.+. . .+.++.+.|...++ .+++++|++++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~--~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~--~~~~~ii~~~~~ 161 (187)
T 2p65_A 95 YRGDFEERLKSILKEVQDA--EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLA--RGELRCIGATTV 161 (187)
T ss_dssp SHHHHHHHHHHHHHHHHHT--TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHH--TTCSCEEEEECH
T ss_pred chhHHHHHHHHHHHHHHhc--CCceEEEEeCHHHhcccccccccchHHHHHHHHHHh--cCCeeEEEecCH
Confidence 4455555667776666541 479999999999954 2 23667777777766 578889998884
No 309
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.63 E-value=0.22 Score=51.94 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=41.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc--------ccccccccch-----HHHHHHHHHHHhccCCeEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS--------SITSKWFGEG-----EKYVKAVFSLASKIAPSVVF 1048 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~s--------eL~s~~~Ge~-----E~~Ir~lF~~A~k~~PsILf 1048 (1163)
.=.+++||.|+|||+.+..+++.+ +..++.+... .+.+. .|.. -.....++..+.. ...+|+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~-~g~~~~a~~~~~~~~i~~~~~~-~~dvVi 86 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSH-MGEKEQAVAIKNSREILKYFEE-DTEVIA 86 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECT-TSCEEECEEESSSTHHHHHCCT-TCSEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhh-cCCceeeEeeCCHHHHHHHHhc-cCCEEE
Confidence 347999999999999888887776 6666555311 11111 1100 0001244544432 357999
Q ss_pred Ecccccc
Q 001076 1049 VDEVDSM 1055 (1163)
Q Consensus 1049 IDEID~L 1055 (1163)
|||+..+
T Consensus 87 IDEaqfl 93 (191)
T 1xx6_A 87 IDEVQFF 93 (191)
T ss_dssp ECSGGGS
T ss_pred EECCCCC
Confidence 9999865
No 310
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.63 E-value=0.04 Score=62.08 Aligned_cols=34 Identities=32% Similarity=0.535 Sum_probs=30.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 1018 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~s 1018 (1163)
+-++|.||+|+|||+||..+|+.++..++..|.-
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 4689999999999999999999999888887753
No 311
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.58 E-value=0.037 Score=57.54 Aligned_cols=32 Identities=34% Similarity=0.537 Sum_probs=28.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
..|.|.|++|+|||++++.|+..+|++++..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 46899999999999999999999998876543
No 312
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.54 E-value=0.034 Score=57.96 Aligned_cols=31 Identities=35% Similarity=0.459 Sum_probs=26.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
.-|.|.|++|+|||++++.|+. +|++++..|
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D 35 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDAD 35 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEcc
Confidence 4689999999999999999998 888776543
No 313
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.50 E-value=0.058 Score=60.90 Aligned_cols=69 Identities=20% Similarity=0.345 Sum_probs=45.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccc-cc----cc---cccchHHHHHHHHHHHhccCCeEEEEcccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSS-IT----SK---WFGEGEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg--~pfi~Id~se-L~----s~---~~Ge~E~~Ir~lF~~A~k~~PsILfIDEID 1053 (1163)
..++|.||+|+|||+|+++|+.... .-.+.++... +. .. ++.......+..+..|....|.+|++||+-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 4699999999999999999998773 2345554322 11 00 110012234456666777899999999985
No 314
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.36 E-value=0.22 Score=50.33 Aligned_cols=19 Identities=37% Similarity=0.684 Sum_probs=17.1
Q ss_pred ceEEEEcCCCChHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKA 1003 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArA 1003 (1163)
.-+.|.||+|+|||+|+++
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4589999999999999994
No 315
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.34 E-value=0.16 Score=62.00 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
+-++++|+||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 469999999999999888776554
No 316
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.32 E-value=0.067 Score=56.77 Aligned_cols=31 Identities=29% Similarity=0.560 Sum_probs=27.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
..|.|.|++|+|||++++.|+..+|++++..
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 4689999999999999999999999887653
No 317
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.29 E-value=0.042 Score=62.61 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=29.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~ 1017 (1163)
.-|+|.||+|+|||+||..||..++..++..|.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 358999999999999999999999977776664
No 318
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.22 E-value=0.032 Score=61.00 Aligned_cols=32 Identities=38% Similarity=0.493 Sum_probs=26.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA-GANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL-g~pfi~Id 1016 (1163)
.-|+|.|+||+|||++|+.|+..+ ++.++..|
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D 35 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc
Confidence 458999999999999999999974 66655443
No 319
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.04 E-value=0.064 Score=58.20 Aligned_cols=138 Identities=13% Similarity=0.097 Sum_probs=71.1
Q ss_pred eeeeecCCCCCCCCCCCC--CCCCCCcccccccccccCCCcchhh-HHHHHHHHHHHHhh-cc-CCCeEEEEcchhhhhc
Q 001076 644 IGVRFDRSIPEGNNLGGF--CEDDHGFFCTASSLRLDSSLGDEVD-KLAINELFEVALNE-SK-SSPLIVFVKDIEKSLT 718 (1163)
Q Consensus 644 vgV~Fd~~~~~~~~l~~~--c~~~~~ff~~~~~~~~d~s~~~~~~-~~~l~~l~evl~~e-~k-~~P~IIffddid~~La 718 (1163)
.+|.|.+|+|+||+.-.. +..-...|.......+-..+|.+.+ ...++.+++..... .+ ..+.||||||||.+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~ 130 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICK 130 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCc
Confidence 368888999999986511 1111111222211111112455532 34566665532100 01 3478999999999443
Q ss_pred CC----hh-----hHHHHHHHHhcC----------CCCEEEEEeccccccccccCCCCCceeeccCCchhhhccccCCCC
Q 001076 719 GN----ND-----AYGALKSKLENL----------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDN 779 (1163)
Q Consensus 719 ~~----~~-----~~~~i~s~L~~L----------~g~VivIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~lldp~~pd~ 779 (1163)
.. .+ +.+.|...|+.. ..++++|++++.... .|+.
T Consensus 131 ~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------------~~~~ 184 (310)
T 1ofh_A 131 KGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVA--------------------------RPSD 184 (310)
T ss_dssp CSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSS--------------------------CGGG
T ss_pred cccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccC--------------------------Cccc
Confidence 22 11 133444455532 236788887652111 0111
Q ss_pred ccccccccccchHHHHHhhhccccceeecCCchhHHHHHHH
Q 001076 780 FSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWK 820 (1163)
Q Consensus 780 ~~~~~~r~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRfe 820 (1163)
+. .++-.+|...|.+++|.++.+..-++
T Consensus 185 l~-------------~~l~~R~~~~i~~~~~~~~~~~~il~ 212 (310)
T 1ofh_A 185 LI-------------PELQGRLPIRVELTALSAADFERILT 212 (310)
T ss_dssp SC-------------HHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred CC-------------HHHHhhCCceEEcCCcCHHHHHHHHH
Confidence 11 34667788778999998887765443
No 320
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.02 E-value=0.052 Score=59.72 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=26.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
.-|.|+|++|+|||++|+.|+ .+|++++..|
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~D 106 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDSD 106 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEHH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEehh
Confidence 459999999999999999999 6888776543
No 321
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=92.95 E-value=0.28 Score=49.96 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=17.4
Q ss_pred ceEEEEcCCCChHHHHH-HHHHHH
Q 001076 985 KGILLFGPPGTGKTMLA-KAVATE 1007 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LA-rALA~e 1007 (1163)
+.+++.+|+|+|||..+ ..+...
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 46999999999999863 334444
No 322
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=92.95 E-value=0.38 Score=49.83 Aligned_cols=61 Identities=21% Similarity=0.205 Sum_probs=32.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHH-HHHHHHHh
Q 001076 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTML-AKAVATEA 1008 (1163)
Q Consensus 945 ~~tfddI~Gleevk~~L~e~V~lpl~~pelf~k~~l--~~p~kgVLL~GPPGTGKT~L-ArALA~eL 1008 (1163)
..+|+++.-.+.+.+.+.+.- +..+..+....+ ....+.+++.+|+|+|||.. +-.+.+.+
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYG---FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cCChhhcCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 346777766666666665532 111111110000 01125699999999999986 33444433
No 323
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.95 E-value=0.52 Score=49.65 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=25.8
Q ss_pred ceEEEEcCCCChHH-HHHHHHHHHh--CCcEEEEe
Q 001076 985 KGILLFGPPGTGKT-MLAKAVATEA--GANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT-~LArALA~eL--g~pfi~Id 1016 (1163)
.=.+++||.|+||| .|.+++.+.. +..++.+.
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 34799999999999 7888887655 67777776
No 324
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.87 E-value=0.039 Score=57.07 Aligned_cols=32 Identities=28% Similarity=0.271 Sum_probs=26.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA-GANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL-g~pfi~Id 1016 (1163)
.-|.|.|++|+|||++++.|+..+ ++.++..|
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 458999999999999999999987 66555443
No 325
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.84 E-value=0.074 Score=61.85 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=27.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
+.-|+|+|+||+|||++|+.++..+++.++..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~ 289 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNR 289 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECCG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEcc
Confidence 35589999999999999999999998766543
No 326
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.82 E-value=0.06 Score=55.76 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=23.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEAG 1009 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eLg 1009 (1163)
+.-++|.||+|+|||+|++.|+..++
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 35699999999999999999999884
No 327
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.77 E-value=0.08 Score=55.11 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=29.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSS 1019 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL----g~pfi~Id~se 1019 (1163)
.-|+|.|++|+|||++++.|+..+ |.+++.++...
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 568999999999999999999876 46677777543
No 328
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.75 E-value=0.059 Score=60.83 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=29.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 1018 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~s 1018 (1163)
+-|+|.||+|+|||+||..||+.++..++..|.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 3588999999999999999999998888777654
No 329
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.74 E-value=0.069 Score=55.89 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~ 1014 (1163)
-|.|.|++|+|||++++.||+.+|++|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58999999999999999999999999984
No 330
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.60 E-value=0.29 Score=55.69 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=29.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001076 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1163)
Q Consensus 982 ~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~ 1017 (1163)
.+..-++|.|+||+|||+||..+|..+ +.++..+++
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 344559999999999999999998765 677777765
No 331
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=92.41 E-value=0.27 Score=50.14 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=15.2
Q ss_pred ceEEEEcCCCChHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAK 1002 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LAr 1002 (1163)
+.+++.+|+|+|||..+.
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 579999999999997443
No 332
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.33 E-value=0.1 Score=62.56 Aligned_cols=69 Identities=26% Similarity=0.409 Sum_probs=45.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccc-ccc---cc--------ccchHHHHHHHHHHHhccCCeEEEEc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSS-ITS---KW--------FGEGEKYVKAVFSLASKIAPSVVFVD 1050 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg--~pfi~Id~se-L~s---~~--------~Ge~E~~Ir~lF~~A~k~~PsILfID 1050 (1163)
..++|.||+|+|||+++++++..+. ...+.+.... +.. .+ ++...-.+..+...+.+..|.+|+++
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivg 340 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVG 340 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeC
Confidence 4699999999999999999998773 3455554332 210 00 01111234455666777899999999
Q ss_pred ccc
Q 001076 1051 EVD 1053 (1163)
Q Consensus 1051 EID 1053 (1163)
|+-
T Consensus 341 Eir 343 (511)
T 2oap_1 341 EVR 343 (511)
T ss_dssp CCC
T ss_pred CcC
Confidence 984
No 333
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.33 E-value=0.07 Score=62.11 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=29.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~ 1017 (1163)
+-|+|.||+|+|||+||..||..++..++..|.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 458999999999999999999999988777654
No 334
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.31 E-value=0.65 Score=49.07 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=17.0
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVA 1005 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA 1005 (1163)
..+++.||+|+|||++...++
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 479999999999998655543
No 335
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.24 E-value=0.29 Score=58.01 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
..++|+|++|+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 469999999999999999887654
No 336
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=92.20 E-value=0.26 Score=54.04 Aligned_cols=89 Identities=17% Similarity=0.176 Sum_probs=46.2
Q ss_pred eeeeecCCCCCCCCCCCC--CCC-CCCcccccccccccCCCcchhhHHHHHHHHHHHHhhccCCCeEEEEcchhhhhcCC
Q 001076 644 IGVRFDRSIPEGNNLGGF--CED-DHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN 720 (1163)
Q Consensus 644 vgV~Fd~~~~~~~~l~~~--c~~-~~~ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k~~P~IIffddid~~La~~ 720 (1163)
..|.|.+|.|+||+.-.. +.. +..|+ ....-+ +. . ...+++.+.. +-.++.+||+||||. +..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~~~~~-~~~~~~--~~---~-----~~~l~~~l~~-~~~~~~~l~lDEi~~-l~~- 104 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELGVNLR-VTSGPA--IE---K-----PGDLAAILAN-SLEEGDILFIDEIHR-LSR- 104 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHTCCEE-EECTTT--CC---S-----HHHHHHHHTT-TCCTTCEEEETTTTS-CCH-
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCEE-EEeccc--cC---C-----hHHHHHHHHH-hccCCCEEEEECCcc-ccc-
Confidence 468888999999987621 110 11122 122111 11 1 1233343322 225678999999998 442
Q ss_pred hhhHHHHHHHHhcCC------------------CCEEEEEecccc
Q 001076 721 NDAYGALKSKLENLP------------------SNVVVIGSHTQL 747 (1163)
Q Consensus 721 ~~~~~~i~s~L~~L~------------------g~VivIgs~~~~ 747 (1163)
+....|...|+... .++++|+++|+.
T Consensus 105 -~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~ 148 (324)
T 1hqc_A 105 -QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRP 148 (324)
T ss_dssp -HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCC
T ss_pred -chHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCc
Confidence 12233334444321 257888888853
No 337
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.18 E-value=1.2 Score=53.20 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
++.-++|.|++|+|||+|++.|+..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 33568999999999999999999876
No 338
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.14 E-value=0.057 Score=57.30 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=28.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMS 1018 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id~s 1018 (1163)
.++|+|.||+|+|||+||..+++... .++..|.-
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~ 67 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDRV 67 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchh
Confidence 46799999999999999999998876 66665543
No 339
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.11 E-value=0.096 Score=53.20 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=21.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGA 1010 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~ 1010 (1163)
-++|.||+|+|||+|++.|+...+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4789999999999999999986643
No 340
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.08 E-value=0.3 Score=50.50 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=28.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~se 1019 (1163)
.-+.|.|++|+|||++++.|+..+ +.+++.++...
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 458999999999999999999876 67777665443
No 341
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.02 E-value=0.3 Score=58.42 Aligned_cols=73 Identities=15% Similarity=0.063 Sum_probs=45.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc-------------------cc-cccchHHHHHHHHHHH
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-------------------SK-WFGEGEKYVKAVFSLA 1039 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~-------------------s~-~~Ge~E~~Ir~lF~~A 1039 (1163)
++..|+|.|++|+|||+++..||..+ |..+..+++.... .. ....+...+...+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 44679999999999999999999776 6666666652110 00 0011222334445555
Q ss_pred hccCCeEEEEcccccc
Q 001076 1040 SKIAPSVVFVDEVDSM 1055 (1163)
Q Consensus 1040 ~k~~PsILfIDEID~L 1055 (1163)
.+....++|||-...+
T Consensus 180 ~~~~~DvvIIDTpG~~ 195 (504)
T 2j37_W 180 KNENFEIIIVDTSGRH 195 (504)
T ss_dssp HHTTCCEEEEEECCCC
T ss_pred HHCCCcEEEEeCCCCc
Confidence 5456689999987654
No 342
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.02 E-value=0.18 Score=60.35 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=28.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~se 1019 (1163)
.-|+|.|.||+|||++|+.|++.+ +.....++..+
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 458999999999999999999998 44555566544
No 343
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.99 E-value=0.52 Score=50.33 Aligned_cols=30 Identities=13% Similarity=0.047 Sum_probs=23.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 001076 987 ILLFGPPGTGKTMLAKAVATEA---GANFINIS 1016 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA~eL---g~pfi~Id 1016 (1163)
.+++|+.|+|||+.+-.++..+ |..++.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 5799999999999888877665 66766664
No 344
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.85 E-value=0.33 Score=56.90 Aligned_cols=72 Identities=19% Similarity=0.184 Sum_probs=47.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccccc----------------cc----cchHHHHHHHHHH
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSK----------------WF----GEGEKYVKAVFSL 1038 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL----g~pfi~Id~seL~s~----------------~~----Ge~E~~Ir~lF~~ 1038 (1163)
+++.|++.|++|+|||+++..||..+ |..+.-+++...... +. ..+...+...+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45679999999999999999888665 677777776532110 00 0123333556666
Q ss_pred HhccCCeEEEEccccc
Q 001076 1039 ASKIAPSVVFVDEVDS 1054 (1163)
Q Consensus 1039 A~k~~PsILfIDEID~ 1054 (1163)
+.+....+|+||=..+
T Consensus 179 ~~~~~~D~VIIDTpG~ 194 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGR 194 (433)
T ss_dssp HHHTTCSEEEEECCCC
T ss_pred HHhCCCCEEEEECCCc
Confidence 6655668999997643
No 345
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.81 E-value=0.53 Score=52.33 Aligned_cols=72 Identities=19% Similarity=0.073 Sum_probs=47.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-------cc------------c-cchHHHHHHHHHHHh
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------KW------------F-GEGEKYVKAVFSLAS 1040 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s-------~~------------~-Ge~E~~Ir~lF~~A~ 1040 (1163)
+.-+++.|++|+|||+++..+|..+ +..+..+++..... .+ . ..+...+......++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4568899999999999999998776 66666666532110 00 0 122333455666666
Q ss_pred ccCCeEEEEcccccc
Q 001076 1041 KIAPSVVFVDEVDSM 1055 (1163)
Q Consensus 1041 k~~PsILfIDEID~L 1055 (1163)
+....+|+||=.-.+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 556789999987544
No 346
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=91.79 E-value=0.16 Score=59.51 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=21.8
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhc
Q 001076 492 CPRILLSGPAGSEIYQETLAKALAKHF 518 (1163)
Q Consensus 492 s~rILLsgpagsE~Yqe~LaKALA~~f 518 (1163)
.+-+||.||+| .-..+||+|+|+++
T Consensus 130 ~~~lll~Gp~G--~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVG--LGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSS--SSHHHHHHHHHHHH
T ss_pred CCeEEEECCCC--CCHHHHHHHHHHHH
Confidence 45799999999 68889999999887
No 347
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.77 E-value=1.5 Score=49.21 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~ 1017 (1163)
++.-++|.|++|+|||+++..||..+ +..+..+++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 44668999999999999999998776 566666654
No 348
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.65 E-value=0.82 Score=50.64 Aligned_cols=73 Identities=21% Similarity=0.180 Sum_probs=46.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-------c--------cc-----cchHHHHHHHHHHH
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------K--------WF-----GEGEKYVKAVFSLA 1039 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s-------~--------~~-----Ge~E~~Ir~lF~~A 1039 (1163)
++.-+.|.|++|+|||+++..+|..+ +..+..+++..... . .+ ..+....+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 44568899999999999999998776 55666555421000 0 00 01222334556666
Q ss_pred hccCCeEEEEcccccc
Q 001076 1040 SKIAPSVVFVDEVDSM 1055 (1163)
Q Consensus 1040 ~k~~PsILfIDEID~L 1055 (1163)
....+.+|+||+--.+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 5567899999998543
No 349
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.61 E-value=0.093 Score=53.62 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=22.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
.-+.|.||+|+|||++++.|+..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999876
No 350
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.60 E-value=0.28 Score=53.46 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=27.6
Q ss_pred CCCeEEEEcchhhhhcCChhhHHHHHHHHhcCC-----------CCEEEEEeccc
Q 001076 703 SSPLIVFVKDIEKSLTGNNDAYGALKSKLENLP-----------SNVVVIGSHTQ 746 (1163)
Q Consensus 703 ~~P~IIffddid~~La~~~~~~~~i~s~L~~L~-----------g~VivIgs~~~ 746 (1163)
....||||||+|. +. .+..+.|...|+.-. .++++|+++|.
T Consensus 118 ~~~~vl~lDEi~~-l~--~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~ 169 (311)
T 4fcw_A 118 RPYSVILFDAIEK-AH--PDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNL 169 (311)
T ss_dssp CSSEEEEEETGGG-SC--HHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEEST
T ss_pred CCCeEEEEeChhh-cC--HHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEeccc
Confidence 4458999999999 43 344455555555432 37888888885
No 351
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=91.53 E-value=1.2 Score=46.03 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=17.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
+.+++.+|+|+|||..+-..+-.
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHH
Confidence 46999999999999865554433
No 352
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.49 E-value=0.72 Score=56.43 Aligned_cols=48 Identities=25% Similarity=0.346 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001076 954 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1163)
Q Consensus 954 leevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~ 1017 (1163)
.+.+++.+...+.. + .-.||+||||||||+++..+...+ +..+..+..
T Consensus 191 N~~Q~~AV~~al~~--------------~--~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 191 DTSQKEAVLFALSQ--------------K--ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp CHHHHHHHHHHHHC--------------S--SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CHHHHHHHHHHhcC--------------C--CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 46677777666531 1 246999999999998555544333 555555543
No 353
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.48 E-value=0.12 Score=52.62 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=22.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG 1009 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg 1009 (1163)
.-+.|.||+|+|||+|++.|+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999998763
No 354
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.33 E-value=0.1 Score=54.36 Aligned_cols=26 Identities=35% Similarity=0.463 Sum_probs=23.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEAG 1009 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eLg 1009 (1163)
+.-+.|.||+|+|||+|++.|+..+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35589999999999999999998874
No 355
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.30 E-value=0.11 Score=53.54 Aligned_cols=29 Identities=34% Similarity=0.421 Sum_probs=25.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFI 1013 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg--~pfi 1013 (1163)
.-+.|.||+|+|||+|++.|+..++ +.++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v 37 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGERVALL 37 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGGGEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 4589999999999999999999887 4443
No 356
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.26 E-value=0.15 Score=53.05 Aligned_cols=25 Identities=40% Similarity=0.624 Sum_probs=22.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG 1009 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg 1009 (1163)
+.|+|.||+|+|||+|++.|.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3599999999999999999988764
No 357
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=91.15 E-value=0.73 Score=57.81 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=19.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
..+++.||+|+|||+++..++..
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999977776544
No 358
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.93 E-value=0.95 Score=52.99 Aligned_cols=73 Identities=21% Similarity=0.150 Sum_probs=45.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccccc-------c---------cc-c---chHHHHHHHHHHH
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------K---------WF-G---EGEKYVKAVFSLA 1039 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL~s-------~---------~~-G---e~E~~Ir~lF~~A 1039 (1163)
++..++|.|++|+|||+++..+|..+ +..+..+++..... . +. + .+...+...+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 45668999999999999999999877 55666665432110 0 00 0 1122335566666
Q ss_pred hccCCeEEEEcccccc
Q 001076 1040 SKIAPSVVFVDEVDSM 1055 (1163)
Q Consensus 1040 ~k~~PsILfIDEID~L 1055 (1163)
+.....+|+||=.-++
T Consensus 177 ~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 177 RLEARDLILVDTAGRL 192 (425)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HHCCCCEEEEcCCCcc
Confidence 5455679999966443
No 359
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=90.87 E-value=0.15 Score=52.07 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG 1009 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg 1009 (1163)
.-+.|.||+|+|||+|++.|+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999998763
No 360
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.85 E-value=0.17 Score=59.24 Aligned_cols=35 Identities=34% Similarity=0.336 Sum_probs=28.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~s 1018 (1163)
+..|+|.|++|+|||+++..||..+ |..+..+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 4579999999999999999998876 5666666654
No 361
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=90.71 E-value=0.17 Score=62.00 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=31.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~se 1019 (1163)
.-|+|+|.+|+|||++|++|++.+ |.+++.+|...
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 459999999999999999999999 99999987433
No 362
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.63 E-value=0.54 Score=47.41 Aligned_cols=41 Identities=27% Similarity=0.329 Sum_probs=30.4
Q ss_pred CCCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEEeccc
Q 001076 703 SSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQ 746 (1163)
Q Consensus 703 ~~P~IIffddid~~La~~~~~~~~i~s~L~~L~g~VivIgs~~~ 746 (1163)
.++.||||||+|. +. .+....|...|+....++++|++++.
T Consensus 101 ~~~~vliiDe~~~-l~--~~~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADA-LT--ADAQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGG-SC--HHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhh-cC--HHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 6799999999999 43 23345566777777778888888773
No 363
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.62 E-value=0.8 Score=54.64 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=47.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc----ccc---------------ccc---------chHHHH
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----TSK---------------WFG---------EGEKYV 1032 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~seL----~s~---------------~~G---------e~E~~I 1032 (1163)
..-++|.||+|+|||+|++.++... |-.++.+...+- ... ... ...+..
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~q 360 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHL 360 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHHHH
Confidence 3568999999999999999998665 445555543221 000 000 123345
Q ss_pred HHHHHHHhccCCeEEEEcccccc
Q 001076 1033 KAVFSLASKIAPSVVFVDEVDSM 1055 (1163)
Q Consensus 1033 r~lF~~A~k~~PsILfIDEID~L 1055 (1163)
+.++..+....|.+|+||=+..|
T Consensus 361 ~~~~a~~l~~~p~llilDp~~~L 383 (525)
T 1tf7_A 361 QIIKSEINDFKPARIAIDSLSAL 383 (525)
T ss_dssp HHHHHHHHTTCCSEEEEECHHHH
T ss_pred HHHHHHHHhhCCCEEEEcChHHH
Confidence 55666777788999999966655
No 364
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.60 E-value=0.54 Score=53.09 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
++.-+.|.||+|+|||++++.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44568999999999999999999876
No 365
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=90.51 E-value=0.77 Score=51.71 Aligned_cols=60 Identities=13% Similarity=0.045 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhhccCCCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEEecccccc
Q 001076 687 KLAINELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQLDS 749 (1163)
Q Consensus 687 ~~~l~~l~evl~~e~k~~P~IIffddid~~La~~~~~~~~i~s~L~~L~g~VivIgs~~~~d~ 749 (1163)
...|+.+|+.+. ..+..|.|||+||||.+. +|+-+|..+. ....-.++++|||..|.+|.
T Consensus 116 ~~~L~~~f~~~~-~~~~~~~ii~lDE~d~l~-~q~~L~~l~~-~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 116 LEALNFYITNVP-KAKKRKTLILIQNPENLL-SEKILQYFEK-WISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHHHHSC-GGGSCEEEEEEECCSSSC-CTHHHHHHHH-HHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHHHHHhh-hccCCceEEEEecHHHhh-cchHHHHHHh-cccccCCcEEEEEEecCccc
Confidence 344555555431 134789999999999955 6665555443 22222558999988886554
No 366
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=90.39 E-value=0.38 Score=56.57 Aligned_cols=86 Identities=16% Similarity=0.197 Sum_probs=48.4
Q ss_pred eeeecCCCCCCCCCCCC--CCCCCCcccccccccccCCCcchhhHHHHHHHHHHHHhhcc-CCCeEEEEcchhhhhcC--
Q 001076 645 GVRFDRSIPEGNNLGGF--CEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESK-SSPLIVFVKDIEKSLTG-- 719 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~~~--c~~~~~ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k-~~P~IIffddid~~La~-- 719 (1163)
.|.|-+|+|+|||.-.. +.....-|...... ..... .++.+++.+..... .++.||||||||. |.+
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~----~~~~~----~ir~~~~~a~~~~~~~~~~iLfIDEI~~-l~~~~ 122 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYANADVERISAV----TSGVK----EIREAIERARQNRNAGRRTILFVDEVHR-FNKSQ 122 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCEEEEEETT----TCCHH----HHHHHHHHHHHHHHTTCCEEEEEETTTC-C----
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeEEEEec----cCCHH----HHHHHHHHHHHhhhcCCCcEEEEeChhh-hCHHH
Confidence 79999999999997621 11111112222211 11122 34444544443322 5789999999999 553
Q ss_pred ChhhHHHHHHHHhcCCCCEEEEEecc
Q 001076 720 NNDAYGALKSKLENLPSNVVVIGSHT 745 (1163)
Q Consensus 720 ~~~~~~~i~s~L~~L~g~VivIgs~~ 745 (1163)
|+.+ ...|+ .|.|++||+++
T Consensus 123 q~~L----L~~le--~~~v~lI~att 142 (447)
T 3pvs_A 123 QDAF----LPHIE--DGTITFIGATT 142 (447)
T ss_dssp --CC----HHHHH--TTSCEEEEEES
T ss_pred HHHH----HHHHh--cCceEEEecCC
Confidence 3333 34444 48999999987
No 367
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.38 E-value=0.19 Score=54.19 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=27.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~I 1015 (1163)
..+-|.|+||+|||++|+.|++.++++++..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 4588999999999999999999999887754
No 368
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=90.26 E-value=0.17 Score=54.06 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~ 1014 (1163)
.-|.|.|++|+|||++|+.||+.+|++|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 358999999999999999999999999865
No 369
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.18 E-value=1.3 Score=46.68 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
..|+|.|++|+|||+|..+|...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 56999999999999999999754
No 370
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=90.08 E-value=0.16 Score=52.75 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEAG 1009 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eLg 1009 (1163)
+..-+.|.||+|+|||+|++.|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 335689999999999999999998874
No 371
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=90.07 E-value=0.33 Score=53.49 Aligned_cols=93 Identities=12% Similarity=0.088 Sum_probs=52.3
Q ss_pred eeeecCCCCCCCCCCCC--CCCCCCcccccccccccCCCcchhhHHHHHHHHHHHHhhcc--CCCeEEEEcchhhhhcCC
Q 001076 645 GVRFDRSIPEGNNLGGF--CEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESK--SSPLIVFVKDIEKSLTGN 720 (1163)
Q Consensus 645 gV~Fd~~~~~~~~l~~~--c~~~~~ff~~~~~~~~d~s~~~~~~~~~l~~l~evl~~e~k--~~P~IIffddid~~La~~ 720 (1163)
.+.|-+|.|+||+.... |..-..-|.... | +. .+ ...++.+++....... .++-|||+||+|. |.+
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l~~~~~~i~--~---~~-~~--~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~-l~~- 119 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDVNADMMFVN--G---SD-CK--IDFVRGPLTNFASAASFDGRQKVIVIDEFDR-SGL- 119 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHTTEEEEEEE--T---TT-CC--HHHHHTHHHHHHHBCCCSSCEEEEEEESCCC-GGG-
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc--c---cc-cC--HHHHHHHHHHHHhhcccCCCCeEEEEECCcc-cCc-
Confidence 47788889999987622 111111111111 1 11 11 2234443333332111 3789999999999 542
Q ss_pred hhhHHHHHHHHhcCCCCEEEEEecccc
Q 001076 721 NDAYGALKSKLENLPSNVVVIGSHTQL 747 (1163)
Q Consensus 721 ~~~~~~i~s~L~~L~g~VivIgs~~~~ 747 (1163)
.+..+.|...|+...+++++|+++|..
T Consensus 120 ~~~~~~L~~~le~~~~~~~iI~~~n~~ 146 (324)
T 3u61_B 120 AESQRHLRSFMEAYSSNCSIIITANNI 146 (324)
T ss_dssp HHHHHHHHHHHHHHGGGCEEEEEESSG
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence 234456777777777888889888843
No 372
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=89.97 E-value=0.65 Score=49.76 Aligned_cols=24 Identities=21% Similarity=0.530 Sum_probs=20.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
...|+|.|.+|+|||+|+.+|...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 357999999999999999998643
No 373
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.92 E-value=0.093 Score=53.99 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=22.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAG 1009 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg 1009 (1163)
-|.|.|++|+|||++++.|+..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999884
No 374
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=89.75 E-value=0.18 Score=52.21 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=22.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG 1009 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg 1009 (1163)
+.+.|.||+|+|||+|++.|+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5699999999999999999998763
No 375
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=89.63 E-value=0.82 Score=53.14 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=21.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
..++|+||+|+|||+|++.|++..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHH
Confidence 579999999999999999998764
No 376
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=89.60 E-value=0.2 Score=51.14 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=21.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAG 1009 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg 1009 (1163)
-+.|.||+|+|||+|++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999998763
No 377
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.55 E-value=1 Score=45.83 Aligned_cols=54 Identities=17% Similarity=0.327 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhc-cCCCeEEEEcchhhhhcCChhhHHHHHHHHhcCCCCEEEEEeccc
Q 001076 690 INELFEVALNES-KSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQ 746 (1163)
Q Consensus 690 l~~l~evl~~e~-k~~P~IIffddid~~La~~~~~~~~i~s~L~~L~g~VivIgs~~~ 746 (1163)
++.+++.+.... ..+|.+|+|||+|. +. .+....|...|+....++++|+++++
T Consensus 111 ~~~~~~~~~~~~~~~~~~vlviDe~~~-l~--~~~~~~l~~~l~~~~~~~~~i~~t~~ 165 (250)
T 1njg_A 111 TRDLLDNVQYAPARGRFKVYLIDEVHM-LS--RHSFNALLKTLEEPPEHVKFLLATTD 165 (250)
T ss_dssp HHHHHHSCCCSCSSSSSEEEEEETGGG-SC--HHHHHHHHHHHHSCCTTEEEEEEESC
T ss_pred HHHHHHHhhhchhcCCceEEEEECccc-cc--HHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 344444443322 25789999999999 32 34455667777777778888888774
No 378
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=89.31 E-value=0.36 Score=54.47 Aligned_cols=67 Identities=25% Similarity=0.326 Sum_probs=52.4
Q ss_pred chhHHHHHHHhhhhhhcccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEeccC
Q 001076 461 SDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (1163)
Q Consensus 461 se~Tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgpagsE~Yqe~LaKALA~~f~a~LLilDs~~ 529 (1163)
.+..+..|..+...|.+...............+.|||.||+| .-..+||||||+.++.+++.++.+.
T Consensus 20 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppG--tGKT~la~~ia~~~~~~~~~~~~~~ 86 (363)
T 3hws_A 20 QEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTG--SGKTLLAETLARLLDVPFTMADATT 86 (363)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTT--SSHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCC--CCHHHHHHHHHHHcCCCEEEechHH
Confidence 366777788888777776544444445555678899999999 5789999999999999999998754
No 379
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=89.26 E-value=0.89 Score=47.31 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=14.7
Q ss_pred ceEEEEcCCCChHHHHH
Q 001076 985 KGILLFGPPGTGKTMLA 1001 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LA 1001 (1163)
+.+++.+|+|+|||..+
T Consensus 58 ~~~l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSY 74 (228)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 47999999999999843
No 380
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=89.20 E-value=0.67 Score=55.69 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=20.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
.++||++|+|+|||..+-.++..+
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEecCCCChHHHHHHHHHHH
Confidence 578999999999999887777654
No 381
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=89.13 E-value=0.99 Score=57.70 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVAT 1006 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~ 1006 (1163)
.-++|.||.|+|||++.+.++.
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHH
Confidence 4589999999999999998863
No 382
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=89.02 E-value=0.36 Score=49.82 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=21.7
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhcC
Q 001076 492 CPRILLSGPAGSEIYQETLAKALAKHFS 519 (1163)
Q Consensus 492 s~rILLsgpagsE~Yqe~LaKALA~~f~ 519 (1163)
.+.|||+||+| .-..+||+++|+.+.
T Consensus 52 ~~~~ll~G~~G--~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 52 VQAIYLWGPVK--SGRTHLIHAACARAN 77 (242)
T ss_dssp CSEEEEECSTT--SSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCC--CCHHHHHHHHHHHHH
Confidence 47799999999 578889999997765
No 383
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.01 E-value=0.4 Score=54.66 Aligned_cols=69 Identities=22% Similarity=0.344 Sum_probs=44.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecc-cccc----c---ccc-c-------hHHHHHHHHHHHhccCCeE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMS-SITS----K---WFG-E-------GEKYVKAVFSLASKIAPSV 1046 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg--~pfi~Id~s-eL~s----~---~~G-e-------~E~~Ir~lF~~A~k~~PsI 1046 (1163)
..++|.||+|+|||+|+++|+.... .-.+.++.. ++.. . ++- . ....++..+..+.+..|.+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~ 255 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTR 255 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCE
Confidence 4699999999999999999998773 234444421 1110 0 110 0 1123455666777778999
Q ss_pred EEEcccc
Q 001076 1047 VFVDEVD 1053 (1163)
Q Consensus 1047 LfIDEID 1053 (1163)
++++|+.
T Consensus 256 ~l~~e~r 262 (361)
T 2gza_A 256 ILLAELR 262 (361)
T ss_dssp EEESCCC
T ss_pred EEEcCch
Confidence 9999985
No 384
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=88.95 E-value=1.4 Score=48.79 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhccCCCeEEEEcchhhhhcC--ChhhHHHHHHHHhcC--CCCEEEEEecccc
Q 001076 689 AINELFEVALNESKSSPLIVFVKDIEKSLTG--NNDAYGALKSKLENL--PSNVVVIGSHTQL 747 (1163)
Q Consensus 689 ~l~~l~evl~~e~k~~P~IIffddid~~La~--~~~~~~~i~s~L~~L--~g~VivIgs~~~~ 747 (1163)
.++.+++.+.. ..+|.|||+||+|.+... ..+....+...+..+ .+++++|++++..
T Consensus 117 ~~~~l~~~l~~--~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 117 VYERLVKRLSR--LRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHHHHHTT--SCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHHHHHHhc--cCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 34555555432 356999999999996544 344444444444444 5689999999854
No 385
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=88.87 E-value=1.6 Score=52.03 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=24.6
Q ss_pred CCceEEEEcCCCChHHHHHHHH--HHHh--CCcEEEEec
Q 001076 983 PCKGILLFGPPGTGKTMLAKAV--ATEA--GANFINISM 1017 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArAL--A~eL--g~pfi~Id~ 1017 (1163)
+..-++|.||+|+|||+|++.+ +... +-.-+.++.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 3356999999999999999994 3332 334455544
No 386
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=88.84 E-value=0.23 Score=51.70 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=28.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 001076 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1163)
Q Consensus 987 VLL~GPPGTGKT~LArALA~eLg~pfi~Id~se 1019 (1163)
+|++|++|+|||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 799999999999999999988 88888887654
No 387
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.83 E-value=2.5 Score=40.73 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001076 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eL 1008 (1163)
.|+|.|++|+|||+|..++...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999997653
No 388
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.79 E-value=0.41 Score=50.95 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=26.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINI 1015 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg--~pfi~I 1015 (1163)
.-|.|.|++|+|||++++.|++.++ ..++..
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 4589999999999999999999986 566544
No 389
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.63 E-value=0.17 Score=56.07 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=26.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEeccccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSIT 1021 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg---~pfi~Id~seL~ 1021 (1163)
.-|.|.||+|+|||++|+.+++.++ ..+..+++..+.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 3589999999999999999999875 555666655543
No 390
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=88.43 E-value=0.28 Score=51.60 Aligned_cols=25 Identities=24% Similarity=0.569 Sum_probs=22.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG 1009 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg 1009 (1163)
+-+.|.||+|+|||+|+++|+....
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999998764
No 391
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=88.37 E-value=0.9 Score=51.44 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=26.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id 1016 (1163)
..|.|.|+||+|||+|+.+++..+ |..+..++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 569999999999999999998876 55554444
No 392
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=88.33 E-value=1.6 Score=50.99 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=18.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
+.+|+.+|+|+|||..+-..+..
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~ 42 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEH 42 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 47999999999999876555433
No 393
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=88.09 E-value=0.41 Score=52.90 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=26.8
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhc---CCeEEEEe
Q 001076 492 CPRILLSGPAGSEIYQETLAKALAKHF---SARLLIVD 526 (1163)
Q Consensus 492 s~rILLsgpagsE~Yqe~LaKALA~~f---~a~LLilD 526 (1163)
.+-+||.||+| .-..+||+++|+++ +.+++.++
T Consensus 37 ~~~lll~G~~G--tGKT~la~~i~~~~~~~~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVG--TGKTHLLQAAGNEAKKRGYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSS--SSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEECCCC--CcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 46799999999 57889999999988 66666554
No 394
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=88.03 E-value=1.5 Score=45.78 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=17.2
Q ss_pred ceEEEEcCCCChHHHHH-HHHHHH
Q 001076 985 KGILLFGPPGTGKTMLA-KAVATE 1007 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LA-rALA~e 1007 (1163)
+.+++.+|+|+|||..+ -.+...
T Consensus 62 ~~~l~~a~TGsGKT~~~~l~~l~~ 85 (230)
T 2oxc_A 62 LDLIVQAKSGTGKTCVFSTIALDS 85 (230)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHHHHH
Confidence 57999999999999853 333344
No 395
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=87.88 E-value=0.36 Score=58.53 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=30.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEeccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG----ANFINISMSS 1019 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg----~pfi~Id~se 1019 (1163)
.-|+|.|.+|+|||++|++|++.++ .+++.+|...
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 5689999999999999999999985 7888888544
No 396
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=87.81 E-value=1.2 Score=45.96 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=14.8
Q ss_pred ceEEEEcCCCChHHHHH
Q 001076 985 KGILLFGPPGTGKTMLA 1001 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LA 1001 (1163)
+.+++.+|+|+|||..+
T Consensus 42 ~~~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAY 58 (219)
T ss_dssp CCEEEECCSSHHHHHHH
T ss_pred CCEEEECCCCChHHHHH
Confidence 46999999999999853
No 397
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=87.75 E-value=1.8 Score=43.41 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
..|+|.|++|+|||+|..++...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999854
No 398
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.61 E-value=0.73 Score=45.95 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=21.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
...|+|.|++|+|||+|..+++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356999999999999999999864
No 399
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=87.47 E-value=0.42 Score=55.49 Aligned_cols=32 Identities=25% Similarity=0.244 Sum_probs=26.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~Id~ 1017 (1163)
.+||.+|+|+|||..+-.++..++..++.+-.
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P 141 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 141 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEES
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEEC
Confidence 59999999999999988888877776666543
No 400
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=87.47 E-value=1.3 Score=46.76 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=14.8
Q ss_pred ceEEEEcCCCChHHHHH
Q 001076 985 KGILLFGPPGTGKTMLA 1001 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LA 1001 (1163)
+.+++.+|+|+|||..+
T Consensus 67 ~~~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSY 83 (242)
T ss_dssp CCEEEEECTTSCHHHHH
T ss_pred CCEEEECCCcCHHHHHH
Confidence 47999999999999853
No 401
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=87.45 E-value=0.75 Score=49.72 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
..|.|.|++|+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999754
No 402
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=87.34 E-value=0.39 Score=51.19 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=24.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGAN 1011 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~p 1011 (1163)
.-+-|.||.|+|||+|++.|+..+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 458899999999999999999988754
No 403
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=87.33 E-value=0.67 Score=51.64 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
++.-+.|.||.|+|||++++.||..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999999876
No 404
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=87.30 E-value=0.4 Score=48.40 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=22.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
.-+.|.||.|+|||+|++.|+..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999999987
No 405
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=87.28 E-value=0.37 Score=49.90 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=22.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG 1009 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg 1009 (1163)
.-+.|.||+|+|||+|++.|+..+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998874
No 406
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=87.19 E-value=0.36 Score=50.82 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=22.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
.-+.|.||+|+|||+|++.|+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458999999999999999999876
No 407
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.11 E-value=1.1 Score=44.47 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
..|+|.|++|+|||+|..+++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999863
No 408
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=87.09 E-value=1.6 Score=55.89 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=18.9
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVA 1005 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA 1005 (1163)
.-++|+||.|+|||++.+.++
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999984
No 409
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=86.96 E-value=0.64 Score=47.74 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=25.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id 1016 (1163)
+-+.|.|++|+|||+|+..|+..+ |..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 468999999999999999998876 55554443
No 410
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=86.63 E-value=0.5 Score=49.13 Aligned_cols=29 Identities=28% Similarity=0.507 Sum_probs=24.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEAGANFI 1013 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eLg~pfi 1013 (1163)
..++||.|++|+|||++|.++... |..++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 468999999999999999999874 55543
No 411
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=86.52 E-value=0.19 Score=54.10 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=25.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-CCcEE
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA-GANFI 1013 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL-g~pfi 1013 (1163)
+.-|.|.|++|+|||++++.|++.+ +..++
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 3568999999999999999999998 54444
No 412
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=86.51 E-value=0.7 Score=46.26 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
...|+|.|++|+|||+|..++....
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999997653
No 413
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.45 E-value=0.63 Score=49.23 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=26.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id 1016 (1163)
.-|.|.|++|+|||++++.|++.+ +++++...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 458999999999999999999888 56776554
No 414
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.34 E-value=0.47 Score=50.30 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=24.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCcE
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA-GANF 1012 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL-g~pf 1012 (1163)
.-|.|.|++|+|||++++.|++.+ +..+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~~~~~ 31 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence 458999999999999999999999 5443
No 415
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=86.12 E-value=1.8 Score=48.85 Aligned_cols=31 Identities=29% Similarity=0.513 Sum_probs=23.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh----CCcEEEEe
Q 001076 986 GILLFGPPGTGKTMLAKAVATEA----GANFINIS 1016 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eL----g~pfi~Id 1016 (1163)
++|+.+|+|+|||..+-.++... +..++.+-
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~ 59 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLA 59 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEEC
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 79999999999999877775554 44554443
No 416
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=86.08 E-value=0.8 Score=50.72 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=23.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEAG 1009 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eLg 1009 (1163)
+.-|.|.|++|+|||+|++.|+..++
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35689999999999999999998885
No 417
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=86.00 E-value=0.47 Score=50.39 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG 1009 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg 1009 (1163)
.-+.|.||+|+|||+|.+.|+....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4589999999999999999998764
No 418
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=85.97 E-value=3.1 Score=51.34 Aligned_cols=19 Identities=37% Similarity=0.553 Sum_probs=16.4
Q ss_pred CceEEEEcCCCChHHHHHH
Q 001076 984 CKGILLFGPPGTGKTMLAK 1002 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LAr 1002 (1163)
...+|+.||+|+|||..+.
T Consensus 39 ~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAE 57 (720)
T ss_dssp TCEEEEECCGGGCHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 3689999999999998763
No 419
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=85.93 E-value=1.1 Score=44.10 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVAT 1006 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~ 1006 (1163)
..+.|.|++|+|||+|...++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999975
No 420
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=85.57 E-value=0.41 Score=50.88 Aligned_cols=130 Identities=20% Similarity=0.240 Sum_probs=66.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc--ccccccccchHHHHHHHHHHHhccCCeEEEEc-cccccc-cC-C-
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMS--SITSKWFGEGEKYVKAVFSLASKIAPSVVFVD-EVDSML-GR-R- 1059 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg~pfi~Id~s--eL~s~~~Ge~E~~Ir~lF~~A~k~~PsILfID-EID~L~-g~-r- 1059 (1163)
.|-|+|..|+|||++++.++. +|++++..|.- +++. .-+..-..+...|-...-.. | ++|+=. +. -
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~-~~~~~~~~i~~~fG~~~~~~------dg~ldR~~L~~~vF 82 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITA-PAGLAMPAIEQTFGPAFVAA------DGSLDRARMRALIF 82 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTS-TTCTTHHHHHHHHCGGGBCT------TSSBCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhc-CCcHHHHHHHHHhChhhcCC------CCCCcHHHHHHHHh
Confidence 589999999999999999988 99998876631 1111 01122223333332111000 0 122100 00 0
Q ss_pred CCcchHH-----HHHHHHHHHHHHhcCCcccCCCCEEEEEEeCCCCCCC-HHHHhccCcEEEecCCCHHHHHHHHHH
Q 001076 1060 ENPGEHE-----AMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD-EAVVRRLPRRLMVNLPDAPNREKIIRV 1130 (1163)
Q Consensus 1060 ~s~~~~e-----al~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld-~aLlrRFd~vI~I~~Pd~eeR~eILk~ 1130 (1163)
.++.... .+..+...+...+... ..+++|+- -|-.+. ..+...|+.+|.+..|......++.+.
T Consensus 83 ~d~~~~~~L~~i~HP~I~~~~~~~~~~~----~~~~vv~d---~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~R 152 (210)
T 4i1u_A 83 SDEDARRRLEAITHPLIRAETEREARDA----QGPYVIFV---VPLLVESRNWKARCDRVLVVDCPVDTQIARVMQR 152 (210)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHTC----CSSSEEEE---CTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhHHHHHHHHHHHHhc----CCCEEEEE---EecccccCCccccCCeEEEEECCHHHHHHHHHhc
Confidence 0011111 2223333444444332 23444442 344455 667778999999999876666666543
No 421
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=85.54 E-value=0.51 Score=52.89 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
+...+.|+||+|+|||+|++.|+..+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34569999999999999999999887
No 422
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=85.53 E-value=2.2 Score=45.80 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
..|+|.|.+|+|||+|..++...-
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999997543
No 423
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=85.50 E-value=1.9 Score=43.11 Aligned_cols=24 Identities=46% Similarity=0.552 Sum_probs=20.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
...|+|.|++|+|||+|..++...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999999998754
No 424
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=85.46 E-value=0.71 Score=56.39 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=18.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001076 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eL 1008 (1163)
.+||.||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999777765543
No 425
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=85.45 E-value=0.29 Score=57.61 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=26.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC---cEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGA---NFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~---pfi~Id 1016 (1163)
..|+|.|.||+|||++++.+++.++. +...++
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 56999999999999999999998753 444444
No 426
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=85.40 E-value=1.4 Score=52.88 Aligned_cols=26 Identities=15% Similarity=0.023 Sum_probs=24.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGA 1010 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~ 1010 (1163)
..|+|.|.+|+|||++|++||+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 56999999999999999999999975
No 427
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=85.21 E-value=1.1 Score=48.47 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=20.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
+.|+|.|.||+|||+|..++...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999999754
No 428
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=85.17 E-value=2.6 Score=45.58 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=22.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id 1016 (1163)
.=.+++|+.|+|||+.+-.++... |..++.+.
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 336999999999998655555444 55555554
No 429
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=84.95 E-value=1.1 Score=51.34 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
++.-++|.||.|+|||++++.||..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 34568999999999999999999876
No 430
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=84.89 E-value=0.34 Score=50.99 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=15.6
Q ss_pred ceEEEEcCCCChHHHHHHHHH-HHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVA-TEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA-~eL 1008 (1163)
.-+.|.||+|+|||+|++.|+ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 458999999999999999999 765
No 431
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.89 E-value=5.1 Score=40.01 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
-.|+|.|++|+|||+|+..+....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 469999999999999999998765
No 432
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=84.87 E-value=3.7 Score=50.43 Aligned_cols=20 Identities=40% Similarity=0.723 Sum_probs=17.0
Q ss_pred CceEEEEcCCCChHHHHHHH
Q 001076 984 CKGILLFGPPGTGKTMLAKA 1003 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArA 1003 (1163)
...+|+.||+|+|||+.+..
T Consensus 46 ~~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEcCCCCcHHHHHHH
Confidence 36799999999999997743
No 433
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=84.84 E-value=0.47 Score=52.65 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG 1009 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg 1009 (1163)
.-+.|.||+|+|||+|++.|+..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 434
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=84.78 E-value=0.31 Score=55.17 Aligned_cols=68 Identities=29% Similarity=0.419 Sum_probs=51.3
Q ss_pred hhHHHHHHHhhhhhhcccccccc---------------cCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001076 462 DITKNVLIASTYVHLKCNNFAKY---------------ASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1163)
Q Consensus 462 e~Tk~~L~~~~~~hLk~~~~~k~---------------~~~l~~~s~rILLsgpagsE~Yqe~LaKALA~~f~a~LLilD 526 (1163)
+..|..|..+.+-|+++.....+ ........+.|||.||+| .-..+|||+||+.++.++..+|
T Consensus 27 ~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~G--tGKT~la~~la~~l~~~~~~~~ 104 (376)
T 1um8_A 27 EQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTG--SGKTLMAQTLAKHLDIPIAISD 104 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTT--SSHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCC--CCHHHHHHHHHHHhCCCEEEec
Confidence 78888898888888776442110 012344567899999999 5788999999999999999998
Q ss_pred ccCCC
Q 001076 527 SLLLP 531 (1163)
Q Consensus 527 s~~~~ 531 (1163)
...+.
T Consensus 105 ~~~~~ 109 (376)
T 1um8_A 105 ATSLT 109 (376)
T ss_dssp GGGCC
T ss_pred chhhh
Confidence 76553
No 435
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=84.72 E-value=0.52 Score=47.27 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 001076 986 GILLFGPPGTGKTMLAKAVATEAG 1009 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eLg 1009 (1163)
-.+|+||.|+|||+|+.+|+-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 479999999999999999998774
No 436
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=84.39 E-value=5.9 Score=43.68 Aligned_cols=56 Identities=14% Similarity=0.231 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhccCCCeEEEEcchhhhhcCC-hhhHHHHHHHHhcC-CCCEEEEEeccc
Q 001076 689 AINELFEVALNESKSSPLIVFVKDIEKSLTGN-NDAYGALKSKLENL-PSNVVVIGSHTQ 746 (1163)
Q Consensus 689 ~l~~l~evl~~e~k~~P~IIffddid~~La~~-~~~~~~i~s~L~~L-~g~VivIgs~~~ 746 (1163)
.++.+++.+.. ...|.||+|||++.+...+ .++...+...+..+ ..++.+|++++.
T Consensus 115 ~~~~l~~~l~~--~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 115 LYRRLVKAVRD--YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHHHHHHT--CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHHhc--cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 45555665543 2459999999999966543 55655666666655 447888888874
No 437
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=84.18 E-value=4.9 Score=44.18 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=35.2
Q ss_pred cccccccccccchhHHHHHHHhhhhhhcccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCC
Q 001076 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSA 520 (1163)
Q Consensus 450 ~vsf~~FPYylse~Tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgpagsE~Yqe~LaKALA~~f~a 520 (1163)
..+|++| +-.++.+..|..+.... ..+-|||.||+| .-..+|||+||+.++-
T Consensus 20 ~~~f~~i--~G~~~~~~~l~~~~~~~---------------~~~~vLl~G~~G--tGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 20 VFPFSAI--VGQEDMKLALLLTAVDP---------------GIGGVLVFGDRG--TGKSTAVRALAALLPE 71 (350)
T ss_dssp CCCGGGS--CSCHHHHHHHHHHHHCG---------------GGCCEEEECCGG--GCTTHHHHHHHHHSCC
T ss_pred CCCchhc--cChHHHHHHHHHHhhCC---------------CCceEEEECCCC--ccHHHHHHHHHHhCcc
Confidence 3567774 44455666654444321 123499999999 5788999999999864
No 438
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=84.13 E-value=0.61 Score=44.86 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
..|++.|++|+|||+|+.++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999764
No 439
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=83.98 E-value=1.5 Score=52.74 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=29.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id~se 1019 (1163)
.-|+|+|++|+|||++|+.|++.+ |.++..++...
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 468999999999999999999887 45777777544
No 440
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=83.95 E-value=1.8 Score=49.20 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=15.9
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAV 1004 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArAL 1004 (1163)
+.+++.+|+|+|||..+-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 47999999999999844333
No 441
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=83.79 E-value=4.5 Score=40.29 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
..|+|.|++|+|||+|..++...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 56999999999999999998754
No 442
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=83.78 E-value=0.7 Score=51.56 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
+.-+.|.||+|+|||++++.||..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3568999999999999999999876
No 443
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=83.78 E-value=4.3 Score=41.40 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
..|+|.|++|+|||+|..++...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999998753
No 444
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=83.67 E-value=1.3 Score=51.61 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=15.6
Q ss_pred CceEEEEcCCCChHHHHH
Q 001076 984 CKGILLFGPPGTGKTMLA 1001 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LA 1001 (1163)
.+.+|+.||+|+|||..+
T Consensus 131 ~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 131 PQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCEEEEECCSSSSHHHHH
T ss_pred CCcEEEEcCCCCchhHHH
Confidence 368999999999999853
No 445
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=83.66 E-value=5.1 Score=50.48 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=20.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
..-++|+||.|+|||++.+.|+..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 346899999999999999998754
No 446
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=83.62 E-value=1.5 Score=47.37 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=19.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVAT 1006 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~ 1006 (1163)
..|+|.|+||+|||+|..++..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 4699999999999999999975
No 447
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=83.61 E-value=1.9 Score=48.56 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
.-+.|.||||+|||+|.++|+..+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999998765
No 448
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=83.50 E-value=0.69 Score=51.76 Aligned_cols=26 Identities=19% Similarity=0.094 Sum_probs=22.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEAG 1009 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eLg 1009 (1163)
+.-+.|.||+|+|||+|++.|+..+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcc
Confidence 34589999999999999999998773
No 449
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=83.50 E-value=1.4 Score=48.10 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=20.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVAT 1006 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~ 1006 (1163)
..|.|.|+||+|||+|..++..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 4689999999999999999975
No 450
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=83.31 E-value=0.68 Score=52.13 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=24.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFI 1013 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eLg~pfi 1013 (1163)
...++||.|++|+|||++|.++... |..++
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 3478999999999999999999875 55554
No 451
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=83.30 E-value=0.75 Score=47.18 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=22.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
...|+|.|++|+|||+|+.+++...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999998764
No 452
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=83.23 E-value=0.78 Score=49.15 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=23.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA-------GANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL-------g~pfi~Id 1016 (1163)
.-|.|.|++|+|||++++.|++.+ |.+++...
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 458999999999999999999887 66665544
No 453
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=83.20 E-value=0.67 Score=47.58 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
+-+.|.|++|+|||+|+..++..+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 468999999999999999998775
No 454
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=83.13 E-value=0.85 Score=44.28 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
...|++.|++|+|||+|..++...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999753
No 455
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=83.02 E-value=2.6 Score=47.46 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
...+.|.|++|+|||+|+..++..+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999998765
No 456
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=82.98 E-value=5.4 Score=44.93 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=21.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
...++|.|++|+|||+|..+++..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999754
No 457
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=82.84 E-value=1.1 Score=51.22 Aligned_cols=33 Identities=27% Similarity=0.457 Sum_probs=26.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINIS 1016 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL---g~pfi~Id 1016 (1163)
..++++.||+|+|||++++.++..+ +..++.+|
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 3579999999999999999987654 55665565
No 458
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=82.77 E-value=0.57 Score=56.65 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=29.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecccc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG----ANFINISMSSI 1020 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg----~pfi~Id~seL 1020 (1163)
..+.|.|++|+|||+|+++|+..++ ..+..++...+
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5689999999999999999999984 34555666544
No 459
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=82.53 E-value=1.1 Score=51.91 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=16.8
Q ss_pred ceEEEEcCCCChHHHHH-HHHH
Q 001076 985 KGILLFGPPGTGKTMLA-KAVA 1005 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LA-rALA 1005 (1163)
+.+|+.||+|+|||..+ .++.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999965 4443
No 460
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=82.37 E-value=0.79 Score=44.27 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
..|++.|++|+|||+|+.++...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 461
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=82.34 E-value=2.4 Score=48.42 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=19.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
+.|.|.|++|+|||+|..+++..
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 34899999999999999999743
No 462
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=82.25 E-value=1.1 Score=47.54 Aligned_cols=32 Identities=28% Similarity=0.223 Sum_probs=26.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~pfi~Id 1016 (1163)
.-|.|.|++|+|||++++.+++.++.+...+.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ 37 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCKLLK 37 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccceEEE
Confidence 45899999999999999999999987544443
No 463
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=82.23 E-value=2.2 Score=46.39 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
..|+|.|.+|+|||+|..++...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999754
No 464
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=82.20 E-value=2.1 Score=44.90 Aligned_cols=17 Identities=35% Similarity=0.640 Sum_probs=14.7
Q ss_pred ceEEEEcCCCChHHHHH
Q 001076 985 KGILLFGPPGTGKTMLA 1001 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LA 1001 (1163)
+.+++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 46999999999999853
No 465
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=82.09 E-value=1.1 Score=50.67 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=23.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEAG 1009 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eLg 1009 (1163)
+.-+.|.||+|+|||+|++.|+..++
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34589999999999999999998875
No 466
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=82.00 E-value=1.2 Score=56.27 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=18.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001076 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 986 gVLL~GPPGTGKT~LArALA~eL 1008 (1163)
-+||.||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 57999999999999777765543
No 467
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=81.91 E-value=0.82 Score=43.96 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=21.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
..|++.|++|+|||+|..++...-
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 579999999999999999998643
No 468
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=81.82 E-value=0.77 Score=46.63 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
..++|.|++|+|||+|.+.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 469
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=81.74 E-value=0.86 Score=43.76 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
..|+|.|++|+|||+|..++....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999987543
No 470
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=81.68 E-value=0.81 Score=43.77 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
..|++.|++|+|||+|+.++....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 369999999999999999998653
No 471
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=81.51 E-value=0.95 Score=46.58 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=22.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAG 1009 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg 1009 (1163)
..++|.|++|+|||+|+..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999998863
No 472
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=81.43 E-value=0.76 Score=49.25 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
..-+.|.||.|+|||+|++.|+...
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998665
No 473
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=81.37 E-value=1.1 Score=48.16 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=25.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCc-EEEEe
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA---GAN-FINIS 1016 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL---g~p-fi~Id 1016 (1163)
.-|.|.|++|+|||++++.|+..+ +++ ++.+.
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~r 63 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTR 63 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeec
Confidence 458999999999999999999887 566 44443
No 474
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=81.33 E-value=7.7 Score=42.64 Aligned_cols=54 Identities=13% Similarity=0.232 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcC-CCChHHHHHHHHHHHh---CCcEEEEecc
Q 001076 955 ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGP-PGTGKTMLAKAVATEA---GANFINISMS 1018 (1163)
Q Consensus 955 eevk~~L~e~V~lpl~~pelf~k~~l~~p~kgVLL~GP-PGTGKT~LArALA~eL---g~pfi~Id~s 1018 (1163)
.+..+.|+..+..... ..+.+-|+++|+ +|+|||++|..+|..+ |..++-+|+.
T Consensus 73 ~Ea~r~lrt~l~~~~~----------~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D 130 (286)
T 3la6_A 73 IEAIRSLRTSLHFAMM----------QAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCD 130 (286)
T ss_dssp HHHHHHHHHHHHHHST----------TTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHHHHHHHHHHhhhcc----------CCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEecc
Confidence 4556666655543111 223456777765 7999999999988776 7788888764
No 475
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=81.31 E-value=0.77 Score=49.12 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
..-+.|.||.|+|||+|.+.|+...
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3458999999999999999998655
No 476
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=81.26 E-value=0.92 Score=43.80 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
..|++.|++|+|||+|..++....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999997543
No 477
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=81.25 E-value=3.9 Score=47.82 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=18.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
+.+|+.+|+|+|||..+-..+..
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~ 45 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEH 45 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHH
Confidence 46999999999999876555433
No 478
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=81.19 E-value=1.5 Score=45.16 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
..|+|.|.+|+|||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 568999999999999999999876
No 479
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=81.16 E-value=0.78 Score=46.53 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
..+.|.|++|+|||+|.+.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999998754
No 480
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=81.16 E-value=1.1 Score=43.81 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHH
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVAT 1006 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~ 1006 (1163)
....|+|.|++|+|||+|..++..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345799999999999999999975
No 481
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=81.00 E-value=1.3 Score=52.30 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=18.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVAT 1006 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~ 1006 (1163)
+-.++.|+||+|||++...++.
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCC
T ss_pred cEEEEEcCCCCCHHHHHHHHhc
Confidence 4479999999999999888764
No 482
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=80.71 E-value=0.97 Score=43.71 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
..|++.|++|+|||+|..++....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998654
No 483
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=80.65 E-value=1.7 Score=45.90 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=26.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEec
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA--GANFINISM 1017 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL--g~pfi~Id~ 1017 (1163)
.-+++.|.+|+|||+++..+|..+ |..+..+++
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 458999999999999999998776 666666653
No 484
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=80.57 E-value=0.95 Score=44.33 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
..|++.|++|+|||+|...+....
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 579999999999999999987643
No 485
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=80.41 E-value=5.4 Score=40.48 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
..|+|.|++|+|||+|+..+...
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 46999999999999999998643
No 486
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=80.41 E-value=0.95 Score=48.70 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=21.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
.-+.|.||.|+|||+|.+.|+...
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999998765
No 487
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=80.39 E-value=0.97 Score=51.22 Aligned_cols=27 Identities=22% Similarity=0.429 Sum_probs=24.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEAGAN 1011 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eLg~p 1011 (1163)
..+.|.||+|+|||+|++.|+..+...
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 568999999999999999999987654
No 488
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=80.39 E-value=0.7 Score=47.27 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
..+.|.|++|+|||+|++.|+..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999887
No 489
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=80.34 E-value=0.72 Score=48.93 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001076 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
.-+.|.||.|+|||+|.+.|+...
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999998655
No 490
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=80.34 E-value=1 Score=44.12 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
..|+|.|++|+|||+|..++...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999754
No 491
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=80.30 E-value=5.9 Score=42.42 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=20.1
Q ss_pred EEEEcCCCChHHH-HHHHHHHHh--CCcEEEEe
Q 001076 987 ILLFGPPGTGKTM-LAKAVATEA--GANFINIS 1016 (1163)
Q Consensus 987 VLL~GPPGTGKT~-LArALA~eL--g~pfi~Id 1016 (1163)
.+++||.|+|||+ |.+.+-+.. +..++.+.
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 5999999999999 555543222 55555443
No 492
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=80.08 E-value=1 Score=43.61 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
..|++.|++|+|||+|..++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999865
No 493
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=80.07 E-value=0.99 Score=43.67 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
..|++.|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999998743
No 494
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=80.05 E-value=3 Score=54.39 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=17.2
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVA 1005 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA 1005 (1163)
..+|+.||+|+|||..+...+
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i 220 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAI 220 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHH
Confidence 579999999999998765443
No 495
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=80.02 E-value=2.4 Score=53.23 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
.-++|.||.|+|||++.+.++..
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 45899999999999999998754
No 496
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=80.01 E-value=1 Score=43.95 Aligned_cols=22 Identities=45% Similarity=0.690 Sum_probs=19.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVAT 1006 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~ 1006 (1163)
..|+|.|++|+|||+|..++..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4699999999999999999864
No 497
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=79.95 E-value=3.2 Score=44.07 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 001076 984 CKGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 984 ~kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
...|+|.|++|+|||+|..++...
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999754
No 498
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=79.93 E-value=0.89 Score=48.78 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001076 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1163)
Q Consensus 983 p~kgVLL~GPPGTGKT~LArALA~eL 1008 (1163)
+..-+.|.||.|+|||+|.+.|+...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33458999999999999999998654
No 499
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=79.84 E-value=1.1 Score=44.38 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
..|+|.|++|+|||+|+.++...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 500
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=79.77 E-value=1.1 Score=43.22 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001076 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1163)
Q Consensus 985 kgVLL~GPPGTGKT~LArALA~e 1007 (1163)
..|+|.|++|+|||+|..++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999863
Done!