BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001077
(1162 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O04716|MSH6_ARATH DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana GN=MSH6 PE=1
SV=2
Length = 1324
Score = 1484 bits (3842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 775/1206 (64%), Positives = 917/1206 (76%), Gaps = 67/1206 (5%)
Query: 1 MAPGKRQNNGRSPLVNPQRQITSFFSKSNSPSPSPTISKLNPNKSNSNP----------- 49
MAP +RQ +GRSPLVN QRQITSFF KS S S SP+ S + P
Sbjct: 1 MAPSRRQISGRSPLVNQQRQITSFFGKSASSSSSPSPSPSPSLSNKKTPKSNNPNPKSPS 60
Query: 50 ------------NPNPNSNSNRTPSPSPSPTTPSPLQSNPKKSRLVIGQTPSPPPSTPAA 97
NPNP+SN SPSP P TPSP+QS KK LVIGQTPSPP S
Sbjct: 61 PSPSPPKKTPKLNPNPSSNLP-ARSPSPGPDTPSPVQSKFKKPLLVIGQTPSPPQSV--- 116
Query: 98 AKSYGEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEWV 157
+YG++V+ K++RVYWPLDK WY+G V +DK KH+V+Y+DGE+E LDLGKEK EWV
Sbjct: 117 VITYGDEVVGKQVRVYWPLDKKWYDGSVTFYDKGEGKHVVEYEDGEEESLDLGKEKTEWV 176
Query: 158 --QESVSLLKRLRR--DSFKKVVVE--DDEEMENVEDEISDDRSDSSDDDWNKNVGKEDV 211
++S RL+R + +KVV + DD EM NVE++ SD S +D W KNVGKE
Sbjct: 177 VGEKSGDRFNRLKRGASALRKVVTDSDDDVEMGNVEEDKSDGDDSSDED-WGKNVGKEVC 235
Query: 212 -SEDEEVDLVDEQE-----------------NKVLR--GRKRKSS------GVKKSKSDG 245
SE+++V+LVDE E N+V + RKRK+S G KKSK+D
Sbjct: 236 ESEEDDVELVDENEMDEEELVEEKDEETSKVNRVSKTDSRKRKTSEVTKSGGEKKSKTDT 295
Query: 246 NAVNADFKSPIIKPVKIFG-SDKLSNGF-DNPVMGDVSERFSAREADKFHFLGPDRRDAK 303
+ FK+ +++P K G +D++ G DN + GD RF AR+++KF FLG DRRDAK
Sbjct: 296 GTILKGFKASVVEPAKKIGQADRVVKGLEDNVLDGDALARFGARDSEKFRFLGVDRRDAK 355
Query: 304 RRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHV 363
RRRP D YDPRTLYLPPDF++ L+ GQ+QWWEFK+KHMDKV+FFKMGKFYELFEMDAHV
Sbjct: 356 RRRPTDENYDPRTLYLPPDFVKKLTGGQRQWWEFKAKHMDKVVFFKMGKFYELFEMDAHV 415
Query: 364 GAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSK 423
GAKELD+QYMKGEQPHCGFPE+NFS+N+EKL RKGYRVLVVEQTETP+QLE RRKE GSK
Sbjct: 416 GAKELDIQYMKGEQPHCGFPEKNFSVNIEKLVRKGYRVLVVEQTETPDQLEQRRKETGSK 475
Query: 424 DKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVAT 483
DKVVKRE+CAVVTKGTLT+GE+L NPDASYLMALTE +S + + + FG+C+VDVAT
Sbjct: 476 DKVVKREVCAVVTKGTLTDGEMLLTNPDASYLMALTEGGESLTNPTAEHNFGVCLVDVAT 535
Query: 484 SRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLS 543
+IILGQ DD DCS L CLLSE+RPVEIIKPA +LS TER I+R TRNPLVN+LVPLS
Sbjct: 536 QKIILGQFKDDQDCSALSCLLSEMRPVEIIKPAKVLSYATERTIVRQTRNPLVNNLVPLS 595
Query: 544 EFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQ 603
EFWD+E T+ E+ IY RI + + + + + GDG + LP +LSEL + +GS
Sbjct: 596 EFWDSEKTIYEVGIIYKRINCQP---SSAYSSEGKILGDGSSFLPKMLSELATEDKNGSL 652
Query: 604 VLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENS 663
LSALGG ++YL+++FLDE+LLRFAKFE LP F ++ +K +MVLDA ALENLE+FENS
Sbjct: 653 ALSALGGAIYYLRQAFLDESLLRFAKFESLPYCDFSNVNEKQHMVLDAAALENLEIFENS 712
Query: 664 RSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEF 723
R+G SGTLYAQLN C+TA GKRLL+TWLARPLYN+ LI+ERQDAVA LRG N P++LEF
Sbjct: 713 RNGGYSGTLYAQLNQCITASGKRLLKTWLARPLYNTELIKERQDAVAILRGENLPYSLEF 772
Query: 724 RKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACS 783
RK+LSRLPDMERL+AR+F+S EA+GRN +KVVLYED AKKQ+QEFIS L GCE M +ACS
Sbjct: 773 RKSLSRLPDMERLIARMFSSIEASGRNGDKVVLYEDTAKKQVQEFISTLRGCETMAEACS 832
Query: 784 SLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYD 843
SL AIL++ SR+L H+LTPG+ LP I S +K+FKDAFDWVEA+NSGR+IPH G D +YD
Sbjct: 833 SLRAILKHDTSRRLLHLLTPGQSLPNISSSIKYFKDAFDWVEAHNSGRVIPHEGADEEYD 892
Query: 844 SACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSS 903
ACK V+E E+SL KHLKEQRKLLGD SI YVT+GKD YLLEVPESL GSVP DYEL SS
Sbjct: 893 CACKTVEEFESSLKKHLKEQRKLLGDASINYVTVGKDEYLLEVPESLSGSVPHDYELCSS 952
Query: 904 KKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDA 963
KKG RYWTP IKKLL ELSQA+SEKESALKSI QRLIG+FCEH KWRQ+V+ATAELD
Sbjct: 953 KKGVSRYWTPTIKKLLKELSQAKSEKESALKSISQRLIGRFCEHQEKWRQLVSATAELDV 1012
Query: 964 LISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGG 1023
LISLA ASD YEG CRPVI S S+ P++SA LGHPVLR DSLG+G FVPN++ IGG
Sbjct: 1013 LISLAFASDSYEGVRCRPVISGSTSDGVPHLSATGLGHPVLRGDSLGRGSFVPNNVKIGG 1072
Query: 1024 HGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHI 1083
ASFILLTGPNMGGKSTLLRQVCLAVILAQ+GADVPAE FE+SPVD+I VRMGAKDHI
Sbjct: 1073 AEKASFILLTGPNMGGKSTLLRQVCLAVILAQIGADVPAETFEVSPVDKICVRMGAKDHI 1132
Query: 1084 MAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA--VFSSGFQSLAGSQ 1141
MAGQSTFLTELSETA+ML+SATRNSLVVLDELGRGT+TSDGQAIA V + +
Sbjct: 1133 MAGQSTFLTELSETAVMLTSATRNSLVVLDELGRGTATSDGQAIAESVLEHFIEKVQCRG 1192
Query: 1142 FLSTLF 1147
F ST +
Sbjct: 1193 FFSTHY 1198
>sp|P54276|MSH6_MOUSE DNA mismatch repair protein Msh6 OS=Mus musculus GN=Msh6 PE=1 SV=3
Length = 1358
Score = 598 bits (1541), Expect = e-169, Method: Compositional matrix adjust.
Identities = 393/1054 (37%), Positives = 567/1054 (53%), Gaps = 94/1054 (8%)
Query: 152 EKIEWVQESVSLLKRLRRDSFKKVVVEDDE-EMENVEDEIS-DDRSDSSDDDWNKNVGKE 209
E E Q SV +R R K+ V+ D E ++ + E D + + S DD + VG
Sbjct: 226 ESEEEAQPSVQGPRRSSRQVKKRRVISDSESDIGGSDVEFKPDTKQEGSSDDASSGVGDS 285
Query: 210 DVSEDEEVDLVDEQENKVLRGRKRKSSGVKKS--KSDGNAVNADFKSPIIKPVKIFGSDK 267
D E++ + K R + +KS K G+A A +PI+ K
Sbjct: 286 D---SEDLGTFGKGAPKRKRAMVAQGGLRRKSLKKETGSAKRA---TPILSETK-----S 334
Query: 268 LSNGFDNPVMGDVSERFSAREADK------FH----FLGPD-RRDAKRRRPGDVYYDPRT 316
+ F P + S D +H +L P+ RRD RRRP ++P T
Sbjct: 335 TLSAFSAPQNSESQTHVSGGGNDSSGPTVWYHETLEWLKPEKRRDEHRRRPDHPEFNPTT 394
Query: 317 LYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGE 376
LY+P +FL + + G ++WW+ KS++ D VIF+K+GKFYEL+ MDA +G EL L +MKG
Sbjct: 395 LYVPEEFLNSCTPGMRKWWQLKSQNFDLVIFYKVGKFYELYHMDAVIGVSELGLIFMKGN 454
Query: 377 QPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKG--SK-DKVVKREICA 433
H GFPE F + L +KGY+V VEQTETPE +E R ++ SK D+VV+REIC
Sbjct: 455 WAHSGFPEIAFGRFSDSLVQKGYKVARVEQTETPEMMEARCRKMAHVSKFDRVVRREICR 514
Query: 434 VVTKGTLTEGELLSANPD---ASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQ 490
++TKGT T +L +P + YL++L E + + + R +G+C VD + + +GQ
Sbjct: 515 IITKGTQTYS-VLDGDPSENYSRYLLSLKEKEEETSGHT--RVYGVCFVDTSLGKFFIGQ 571
Query: 491 VMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAET 550
DD CS L++ PV+I+ LS ET+ + + L L+P S+FWDA
Sbjct: 572 FSDDRHCSRFRTLVAHYPPVQILFEKGNLSTETKTVLKGSLSSCLQEGLIPGSQFWDATK 631
Query: 551 TVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDS--------GS 602
T+ +L + N GD T LP +L + S DS
Sbjct: 632 TL------------RTLLEGGYFTGN----GDSSTVLPLVLKGMTSESDSVGLTPGEESE 675
Query: 603 QVLSALGGTLFYLKKSFLDETLLRFAKFE------------LLPCSGFGDMAKKPYMVLD 650
LSALGG +FYLKK +D+ LL A FE + P + F +++ MVLD
Sbjct: 676 LALSALGGIVFYLKKCLIDQELLSMANFEEYFPLDSDTVSTVKPGAVFTKASQR--MVLD 733
Query: 651 APALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVA 710
A L NLE+F N +G + GTL +L+ C T FGKRLL+ WL PL + I +R DAV
Sbjct: 734 AVTLNNLEIFLNGTNGSTEGTLLERLDTCHTPFGKRLLKQWLCAPLCSPSAISDRLDAVE 793
Query: 711 GLRGVNQPFALEFRKALSRLPDMERLLARLF-ASSEANGRNS--NKVVLYEDA--AKKQL 765
L V E L +LPD+ERLL+++ S +N ++ ++YE+ +KK++
Sbjct: 794 DLMAVPDKVT-EVADLLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKI 852
Query: 766 QEFISALHGCELMDQACSSLGAILENTESRQLHHILT-----PGKGLPAIVSILKHFKDA 820
+F+SAL G ++M + L + S+ L ++T P P + + L+ + A
Sbjct: 853 IDFLSALEGFKVMCKVSGLLEEVAGGFTSKTLKQVVTLQSKSPKGRFPDLTAELQRWDTA 912
Query: 821 FDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKD 880
FD +A +G I P G D DYD A ++E E SL ++L +QR LG SI Y IG++
Sbjct: 913 FDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLDKQRSRLGCKSIVYWGIGRN 972
Query: 881 LYLLEVPESLRG-SVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQR 939
Y LE+PE+ ++P +YEL+S+KKG RYWT I+K L L AE ++++LK ++R
Sbjct: 973 RYQLEIPENFATRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDTSLKDCMRR 1032
Query: 940 LIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSL 999
L F ++H W+ V A LD L+ LA S +GP CRP I+ + P++ K
Sbjct: 1033 LFCNFDKNHKDWQSAVECIAVLDVLLCLANYSQGGDGPMCRPEIVLPGEDTHPFLEFKGS 1092
Query: 1000 GHPVLRSDSLGKGEFVPNDITIGG------HGNASFILLTGPNMGGKSTLLRQVCLAVIL 1053
HP + G +F+PNDI IG HG A +L+TGPNMGGKSTL+RQ L ++
Sbjct: 1093 RHPCITKTFFGD-DFIPNDILIGCEEEAEEHGKAYCVLVTGPNMGGKSTLIRQAGLLAVM 1151
Query: 1054 AQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLD 1113
AQ+G VPAE ++PVDR+F R+GA D IM+G+STF ELSETA +L AT +SLV++D
Sbjct: 1152 AQLGCYVPAEKCRLTPVDRVFTRLGASDRIMSGESTFFVELSETASILRHATAHSLVLVD 1211
Query: 1114 ELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLF 1147
ELGRGT+T DG AIA ++ + LA + TLF
Sbjct: 1212 ELGRGTATFDGTAIA--NAVVKELAETIKCRTLF 1243
>sp|P52701|MSH6_HUMAN DNA mismatch repair protein Msh6 OS=Homo sapiens GN=MSH6 PE=1 SV=2
Length = 1360
Score = 584 bits (1506), Expect = e-165, Method: Compositional matrix adjust.
Identities = 377/1013 (37%), Positives = 559/1013 (55%), Gaps = 73/1013 (7%)
Query: 190 ISDDRSD--SSDDDWNKNVGKEDVSEDEEVDLVDEQEN-------KVLRGRKRKSSG--- 237
ISD SD SD ++ + KE+ S DE V + E+ KV R RKR +G
Sbjct: 251 ISDSESDIGGSDVEFKPDT-KEEGSSDEISSGVGDSESEGLNSPVKVARKRKRMVTGNGS 309
Query: 238 VKKSKSDGNAVNADFKSPII-----KPVKIFGSDKLSNGFDNPVMG-DVSERFSAREADK 291
+K+ S +A ++ I ++ F + + S + G D S R + +
Sbjct: 310 LKRKSSRKETPSATKQATSISSETKNTLRAFSAPQNSESQAHVSGGGDDSSRPTVWYHET 369
Query: 292 FHFLGPD-RRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKM 350
+L + RRD RRRP +D TLY+P DFL + + G ++WW+ KS++ D VI +K+
Sbjct: 370 LEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKV 429
Query: 351 GKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETP 410
GKFYEL+ MDA +G EL L +MKG H GFPE F + L +KGY+V VEQTETP
Sbjct: 430 GKFYELYHMDALIGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETP 489
Query: 411 EQLELRRKEKG---SKDKVVKREICAVVTKGTLTEGELLSANPD---ASYLMALTESNQS 464
E +E R ++ D+VV+REIC ++TKGT T +L +P + YL++L E +
Sbjct: 490 EMMEARCRKMAHISKYDRVVRREICRIITKGTQTYS-VLEGDPSENYSKYLLSLKEKEED 548
Query: 465 PASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETE 524
+ + R +G+C VD + + +GQ DD CS L++ PV+++ LS ET+
Sbjct: 549 SSGHT--RAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETK 606
Query: 525 RAILRHTRNPLVNDLVPLSEFWDAETTV---LEIKNIYNRITAESLNKADSNVANSQAEG 581
+ L L+P S+FWDA T+ LE + +++ + +E
Sbjct: 607 TILKSSLSCSLQEGLIPGSQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMTSES 666
Query: 582 DGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFE--------LL 633
D + PG SEL LSALGG +FYLKK +D+ LL A FE +
Sbjct: 667 DSIGLTPGEKSEL---------ALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTV 717
Query: 634 PCSGFGDMAKKPY--MVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTW 691
+ G + K Y MVLDA L NLE+F N +G + GTL +++ C T FGKRLL+ W
Sbjct: 718 STTRSGAIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQW 777
Query: 692 LARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLF-ASSEANGRN 750
L PL N I +R DA+ L V + E + L +LPD+ERLL+++ S +N
Sbjct: 778 LCAPLCNHYAINDRLDAIEDLMVVPDKIS-EVVELLKKLPDLERLLSKIHNVGSPLKSQN 836
Query: 751 S--NKVVLYEDA--AKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILT---- 802
++ ++YE+ +KK++ +F+SAL G ++M + + + + +S+ L +++
Sbjct: 837 HPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISLQTK 896
Query: 803 -PGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLK 861
P P + L + AFD +A +G I P G D DYD A ++E E SL ++L+
Sbjct: 897 NPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLE 956
Query: 862 EQRKLLGDTSITYVTIGKDLYLLEVPESLRG-SVPRDYELRSSKKGFFRYWTPNIKKLLG 920
+QR +G +I Y IG++ Y LE+PE+ ++P +YEL+S+KKG RYWT I+K L
Sbjct: 957 KQRNRIGCRTIVYWGIGRNRYQLEIPENFTTRNLPEEYELKSTKKGCKRYWTKTIEKKLA 1016
Query: 921 ELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCR 980
L AE ++ +LK ++RL F +++ W+ V A LD L+ LA S +GP CR
Sbjct: 1017 NLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCR 1076
Query: 981 PVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGG------HGNASFILLTG 1034
PVIL + P++ K HP + G +F+PNDI IG +G A +L+TG
Sbjct: 1077 PVILLP-EDTPPFLELKGSRHPCITKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTG 1134
Query: 1035 PNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTEL 1094
PNMGGKSTL+RQ L ++AQ+G VPAE+ ++P+DR+F R+GA D IM+G+STF EL
Sbjct: 1135 PNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVEL 1194
Query: 1095 SETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLF 1147
SETA +L AT +SLV++DELGRGT+T DG AIA ++ + LA + TLF
Sbjct: 1195 SETASILMHATAHSLVLVDELGRGTATFDGTAIA--NAVVKELAETIKCRTLF 1245
>sp|Q9VUM0|MSH6_DROME Probable DNA mismatch repair protein Msh6 OS=Drosophila melanogaster
GN=Msh6 PE=1 SV=2
Length = 1190
Score = 481 bits (1239), Expect = e-134, Method: Compositional matrix adjust.
Identities = 324/900 (36%), Positives = 474/900 (52%), Gaps = 76/900 (8%)
Query: 291 KFHFLGPDR-RDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFK 349
K FL PD+ +D + RRP YD TL++P FL LS G +QWW KS + D V+FFK
Sbjct: 224 KLEFLQPDKIKDKEGRRPDHPDYDKSTLHVPEKFLNGLSPGVRQWWVLKSDNYDCVLFFK 283
Query: 350 MGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTET 409
+GKFYEL+ MDA VG EL YM+GE H GFPE +F L +G++V VEQTET
Sbjct: 284 VGKFYELYHMDADVGVNELGFTYMRGEFAHSGFPEISFDKMSTILVDRGFKVARVEQTET 343
Query: 410 PEQLELRRKE-KGSK-DKVVKREICAVVTKGTLTEGELLSANPDA--SYLMALTESNQSP 465
P+ + R K K +K DKVV REIC + +GT G P+ +Y++A+ E ++
Sbjct: 344 PDMMTERCKRIKATKFDKVVAREICQITNRGTQVFGSQCKIGPNHQPNYMLAIVEKDEGT 403
Query: 466 ASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETER 525
S+ +G+C +D + LG+ DD +CS L L+S PV + + LS T++
Sbjct: 404 CSR-----YGVCFIDTSIGDFHLGEFEDDKNCSRLLTLVSHHMPVLFLNEKSALSQRTQQ 458
Query: 526 AILRHTRNPLVNDLVPLS--EFWDAETTVLEIKNIYNRITAESLNKADSN----VANSQA 579
I+R ++ + VP + AE T +K + R A +D N + Q+
Sbjct: 459 -IVRTVLGGILKEPVPGNGKHACSAEKT---LKLLAERYYAGP--GSDDNWPLVLRTMQS 512
Query: 580 EGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFEL-LPCSGF 638
+ D L P D+ L ALG +F++ K L+ +L A+++L +P
Sbjct: 513 DMDHLGLTPN---------DNYKLALKALGQCIFFIHKCKLEPKVLPMARYQLYVPPDQL 563
Query: 639 GDMA-------KKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTW 691
D ++ +MVLDA L NL + S L + L+HC T FGKRLL W
Sbjct: 564 ADAKPAVASTLRRSHMVLDATTLSNLRIIGEEHS------LLSTLDHCCTKFGKRLLHHW 617
Query: 692 LARPLYNSGLIRERQDAVAGLRGVNQPFAL-EFRKALSRLPDMERLLAR--LFASSEANG 748
L P + +I+ERQDA+ L + P L E R L+ +PD ER LA+ LF + +
Sbjct: 618 LCAPSCDVSVIKERQDAIGEL--IRMPTELQEVRALLAPMPDFERNLAQIHLFGNKQIKQ 675
Query: 749 RNS--NKVVLYEDAA--KKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPG 804
+ ++ +L+E+ K++LQ F++ L G + + ++ + T +++ + G
Sbjct: 676 MDHPDSRAILFEEKLYNKQKLQGFMAVLKGFNDLTK-LPTMFHQCKTTLLKRITQLPESG 734
Query: 805 KGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQR 864
P + L++F AFD A +G I P G+D +YD+A + E+E L +L EQ
Sbjct: 735 GSFPDLSKELQYFATAFDHDAAAKTGVIAPQAGMDAEYDAAMDSIGEVEKRLKTYLVEQE 794
Query: 865 KLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKG---FFRYWTPNIKKLLGE 921
+ G ITY K Y L+VPES + Y L KG RY T + LL +
Sbjct: 795 RHFG-CRITYFGSDKKRYQLDVPESHASKANKSYTLEGQTKGKKPSRRYTTAETRALLKD 853
Query: 922 LSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGP---T 978
+ AE + LK + +RL +F H+++W+Q + A LD L SLA Y G
Sbjct: 854 MQHAEDTRNMVLKDLARRLFEKFSNHYDQWKQCIDCVANLDVLGSLAE----YAGQQMVI 909
Query: 979 CRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMG 1038
C P ++ ++P+I + HP + + ++PN + +G A LLTGPNMG
Sbjct: 910 CVPELVSDA--DQPFIQLEEGYHPCANAST-----YIPNGLELGTASEAPLSLLTGPNMG 962
Query: 1039 GKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETA 1098
GKSTL+R+V L VI+AQ+GA +PA +S VDRIF R+GA+D I+AG STFL EL+ET+
Sbjct: 963 GKSTLMREVGLLVIMAQIGAHIPAASCRLSLVDRIFTRLGAQDDILAGHSTFLVELNETS 1022
Query: 1099 LMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGF-QSLAGSQFLSTLFIKCNAVDCFQ 1157
L+L AT +SLV+LDELGRGT+T DG AIA F +L ST + N +D F
Sbjct: 1023 LILKHATCHSLVLLDELGRGTATYDGTAIAASVVNFLANLKCRTLFSTHYH--NLIDFFH 1080
>sp|Q55GU9|MSH6_DICDI DNA mismatch repair protein Msh6 OS=Dictyostelium discoideum GN=msh6
PE=3 SV=1
Length = 1260
Score = 441 bits (1133), Expect = e-122, Method: Compositional matrix adjust.
Identities = 284/875 (32%), Positives = 461/875 (52%), Gaps = 89/875 (10%)
Query: 312 YDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQ 371
YD RTL++P L S ++Q+W+ KSK+ D V+FFK GKFYEL+E DA +G ++L L+
Sbjct: 345 YDKRTLHIPASCLSKFSPFERQFWDIKSKNYDTVVFFKKGKFYELYESDADIGHQQLHLK 404
Query: 372 YM-KGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKG---SKDKVV 427
+ G PE +F+ KL G++V V+Q ET + R+ EKG KD ++
Sbjct: 405 LTDRVNMRMVGVPEMSFNHWASKLIHLGHKVAKVDQMETSIGMAKRQNEKGGRNKKDSII 464
Query: 428 KREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRII 487
+RE+ +++T GTL + ++++ + ++YLMA+ E+ D+ +G+C VDV+
Sbjct: 465 QRELTSILTAGTLLDEQMIT-DQTSTYLMAIKENEY-------DKQYGVCFVDVSIGEFY 516
Query: 488 LGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILR--HTRNPLVNDLVPLSEF 545
L + DD + LL ++ P EI+ SP+T + R T P++N + L E+
Sbjct: 517 LCTIQDDDNRMQFETLLLQMMPKEIVYEKGATSPKTISIMKRVLSTVKPVMNARLSL-EY 575
Query: 546 WDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVL 605
WD T+ I + T E+L + + ++
Sbjct: 576 WDPTDTMERITQLCGGKTPETLCQMKNE----------------------------EYLM 607
Query: 606 SALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRS 665
ALGG + YL + +++ A+F+ G+ M+LD L NLE+F NS
Sbjct: 608 GALGGCISYLMDIKIGNSVVEQARFKRFNPLDIGNS-----MILDGQCLVNLEIFNNSTD 662
Query: 666 GDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRK 725
G + GTL+ ++ C TAFGKR+ R W+ RPL N I +RQ A+ LR + P L+
Sbjct: 663 GSTEGTLFKLMDRCTTAFGKRMFRQWICRPLANKNAIVDRQKAIEFLR--DSPETLQKVT 720
Query: 726 A-LSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQ-----EFISALH--GCEL 777
A L++LPD+ER++AR+ A + + + +++ K L+ E I ++H C
Sbjct: 721 AILNKLPDLERMIARIRAQTSKISDLISVLNHFDNIHSKLLELLDEAEQIESIHLRSCLF 780
Query: 778 MDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGG 837
MD + + + ++ G P + ++ + +F +E + R++P G
Sbjct: 781 MDNQQDNDDI---DEQENSNNNNNIRYSGYPNLKPYIERVRKSFT-IEQD---RVVPSKG 833
Query: 838 VDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRD 897
+ +++D ++ +E S KHL+EQ+ I Y +GK++Y +E+P + +P
Sbjct: 834 LFLEFDQCLGNIQSLEQSFAKHLEEQKAHFKCNKIEYKHMGKEIYQIEIPVAFTKKLPAG 893
Query: 898 YELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAA 957
+ L+SS RY +P + K L L + E K +L++++ F + N ++ +
Sbjct: 894 FSLKSSSSKVNRYHSPFVTKNLTSLLEERDTYEVLSKEVLKKILSNFAIYFNHFQIAITK 953
Query: 958 TAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPN 1017
++LD L+SL S CRP+ + S ++ +I K + HP + S S +F+PN
Sbjct: 954 LSQLDCLLSLYKVSFQSSIQMCRPLFVSS--DQRGFIDVKDMRHPCIYSKS--GDDFIPN 1009
Query: 1018 DITIGGHGNA-SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVR 1076
DI++ N S ++LTGPNMGGKSTLLRQ C+ VI+AQ+G V A E+S VDRIF R
Sbjct: 1010 DISLNTENNPPSLMVLTGPNMGGKSTLLRQSCILVIMAQMGCYVSASSCEMSIVDRIFTR 1069
Query: 1077 MGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA-------- 1128
+GA D+I+AGQSTF+ EL+ET+ +L AT+ SLV+LDELGRGTST DG +IA
Sbjct: 1070 LGANDNILAGQSTFMVELAETSAVLKYATKRSLVILDELGRGTSTFDGYSIAYSVLNYLA 1129
Query: 1129 -------VFSSGFQSLAGS----QFLSTLFIKCNA 1152
+F++ +QSLA +ST ++ C+
Sbjct: 1130 TKVQSMCIFATHYQSLAYEPTVRDLISTAYMTCHV 1164
>sp|O74502|MSH6_SCHPO DNA mismatch repair protein msh6 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=msh6 PE=1 SV=1
Length = 1254
Score = 439 bits (1129), Expect = e-122, Method: Compositional matrix adjust.
Identities = 323/997 (32%), Positives = 509/997 (51%), Gaps = 99/997 (9%)
Query: 169 RDSFKKVVVEDDEEMENVE-DEISDDRSDSSDDDWNKNVGKEDV-SEDEEVDLVDEQENK 226
+ S K +V DDE + VE D IS+ S++S + ++V S DE+VD +
Sbjct: 217 KGSRHKRIVSDDESDDYVEPDHISEASSEAS-------LPIDEVESMDEDVDGYSDHSVS 269
Query: 227 VLRGRKRKSSGVKKSKSDGNAVNADFKSPIIKPV-KIFGSDKLSNGFDNPVMGDVSERFS 285
V +K S +K S+ + S I P + GS + N V+ +R
Sbjct: 270 VAAPIPKKES--RKESSNSLYESYRLGSQIASPSPSVSGSASPTKSNKNGVLNREEKRRQ 327
Query: 286 AREA------DKFHFLGPDRRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKS 339
EA +++ +L D RDA + R GD YDPRTLY+PP +KQ+W+ K
Sbjct: 328 RMEAFKKENNERYEWL-LDVRDADQNRVGDPNYDPRTLYIPPSAWATFKPFEKQFWKIKK 386
Query: 340 KHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYM-KGEQPHCGFPERNFSMNVEKLARKG 398
MD V+FF+ GKFYEL+E DA +G + L+ + G PE +F + KG
Sbjct: 387 DLMDTVVFFQKGKFYELYENDAAIGHQVFSLKLTDRVNMKMVGIPEASFDYWASQFIAKG 446
Query: 399 YRVLVVEQTETPEQLELRRKEKGSKD-KVVKREICAVVTKGTLTEGELLSANPDASYLMA 457
YR+ V+Q ET E++ +++ K+ KVV+R + V+T GTL + +L+++ ++Y MA
Sbjct: 447 YRIARVDQLETALGKEIKDRQRTQKEEKVVQRGLTQVLTSGTLVDEAMLTSDL-STYCMA 505
Query: 458 LTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPAN 517
+ ES QS + + FGIC +D +T + + DD+ + L LL+++RP E+I +
Sbjct: 506 IKESLQSDNEEPS---FGICFIDTSTGGFHMCEFTDDIHRTKLDTLLTQVRPKELILEKS 562
Query: 518 MLSPETERAILRH-TRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVAN 576
+S ++ RAI + + + N + P +EFWD E EI I +
Sbjct: 563 KISQKSIRAIKYCVSSSSIWNFIKPYTEFWDNERVEREI------IAGDYFK-------- 608
Query: 577 SQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCS 636
+GL P IL +S +SA G +YL++ LD+ + F+ S
Sbjct: 609 -----NGLEGAPKILKSYLS---EKPLAISAFGALFWYLRQLKLDKDMCSMGNFDEYDAS 660
Query: 637 GFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPL 696
+ ++++ L+NLE+F NS G S GTL+ L CVT FGKRL TWL PL
Sbjct: 661 -----QQSTSLLMNGQTLKNLEIFSNSFDGGSEGTLFHLLCRCVTPFGKRLFHTWLCHPL 715
Query: 697 YNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVL 756
+ I R D V L N L +LPD+ERL++R+ A GR+
Sbjct: 716 RSGTAINARLDVVE-LIADNPVIRDTIWGFLHKLPDLERLISRVHA-----GRS------ 763
Query: 757 YEDAAKKQLQEFISALHGCELMDQACSSL-GAILENTESRQLHHILTPGKGLPAIVSILK 815
+ +F+ L G + ++ A L +E E L I+ + P + L+
Sbjct: 764 -------KPADFVRVLEGFQRINSAFDQLREEFMEVAEGTLLGEII---QSAPNMKEELE 813
Query: 816 HFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYV 875
+ AF+W +A+ G P G + +YD++ K E++ L L++ +K L +S+ +
Sbjct: 814 AWTRAFNWQKASEEGVFEPEIGFEAEYDTSQKYQSELKNELYALLEQYKKQLRCSSLNFK 873
Query: 876 TIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKS 935
IGK++Y +EVP ++ VP ++ S K RY+ ++K + +L +AE + +
Sbjct: 874 NIGKEVYQVEVPSDVK--VPVNWCKMSGTKKTNRYYNDELRKKIKKLLEAEELHLAIMSR 931
Query: 936 ILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYIS 995
+ ++ +F ++ +W ++ TA +D SL+ A+ P CRP I++ ++ ++
Sbjct: 932 MQEKFYIRFDSNYEQWLALIKYTASIDCFFSLSQAAAALGEPYCRPEIIE---QKDGHLY 988
Query: 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ 1055
+ L HP + + + FVPND+ +GG + + I+LTGPNM GKSTLLRQVC+AVI+AQ
Sbjct: 989 FEELRHPCINASA--ASTFVPNDVVLGGE-SPNMIVLTGPNMAGKSTLLRQVCIAVIMAQ 1045
Query: 1056 VGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDEL 1115
+G VPA+ I+P+ I+ R+GA D IM+ +STF+ ELSET +L SLV+LDEL
Sbjct: 1046 LGCWVPAKRASITPMTSIYTRLGANDDIMSARSTFMVELSETKKILDECGPKSLVILDEL 1105
Query: 1116 GRGTSTSDGQAIA---------------VFSSGFQSL 1137
GRGTST DG AIA FS+ +QSL
Sbjct: 1106 GRGTSTYDGHAIAYAVLHHLVSNIGCLGFFSTHYQSL 1142
>sp|Q03834|MSH6_YEAST DNA mismatch repair protein MSH6 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MSH6 PE=1 SV=1
Length = 1242
Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust.
Identities = 283/879 (32%), Positives = 454/879 (51%), Gaps = 87/879 (9%)
Query: 275 PVMGDVSERFSAREADKFHFLGPDRRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQW 334
P S +F+ + +++ +L D RDA+RR D YDPRTLY+P + +KQ+
Sbjct: 260 PSATSKSSKFNKQNEERYQWL-VDERDAQRRPKSDPEYDPRTLYIPSSAWNKFTPFEKQY 318
Query: 335 WEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPH---CGFPERNFSMNV 391
WE KSK D ++FFK GKF+EL+E DA + DL+ G + + G PE +F
Sbjct: 319 WEIKSKMWDCIVFFKKGKFFELYEKDALLANALFDLKIAGGGRANMQLAGIPEMSFEYWA 378
Query: 392 EKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPD 451
+ + GY+V V+Q E+ E+R KG +VKRE+ ++T GTLT+G++L ++
Sbjct: 379 AQFIQMGYKVAKVDQRESMLAKEMREGSKG----IVKRELQCILTSGTLTDGDMLHSDL- 433
Query: 452 ASYLMALTES-----NQSPASQST------DRCFGICVVDVATSRIILGQVMDDLDCSVL 500
A++ +A+ E N++ ST + FG +D AT + + + DD +C+ L
Sbjct: 434 ATFCLAIREEPGNFYNETQLDSSTIVQKLNTKIFGAAFIDTATGELQMLEFEDDSECTKL 493
Query: 501 CCLLSELRPVEIIKPANMLSPETERAI-LRHTRNPLVNDLVPLSEFWDAETTVLEIKNIY 559
L+S++RP+E++ N LS + + N + N++ EF+D + T EI
Sbjct: 494 DTLMSQVRPMEVVMERNNLSTLANKIVKFNSAPNAIFNEVKAGEEFYDCDKTYAEI---- 549
Query: 560 NRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQV-LSALGGTLFYLKKS 618
I++E + + P +L S D+G +V SA GG L+YLK
Sbjct: 550 --ISSEYFSTEED--------------WPEVLK---SYYDTGKKVGFSAFGGLLYYLKWL 590
Query: 619 FLDETLLRFAKFELLPCSGFGDMAKKPY-MVLDAPALENLEVFENSRSGDSSGTLYAQLN 677
LD+ L+ + D K + MVLD L+NLE+F NS G GTL+ N
Sbjct: 591 KLDKNLISMKNIKEY------DFVKSQHSMVLDGITLQNLEIFSNSFDGSDKGTLFKLFN 644
Query: 678 HCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFAL--EFRKALSRLPDMER 735
+T GKR+++ WL PL I R D+V L Q L + S+LPD+ER
Sbjct: 645 RAITPMGKRMMKKWLMHPLLRKNDIESRLDSVDSLL---QDITLREQLEITFSKLPDLER 701
Query: 736 LLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESR 795
+LAR+ S ++ KV+ A + + E +L +L + + E
Sbjct: 702 MLARIH-SRTIKVKDFEKVI----TAFETIIELQDSLKNNDLKGDVSKYISSFPE----- 751
Query: 796 QLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEAS 855
+V +K + +AF+ +A N I+P G D+++D + +++E+E
Sbjct: 752 -------------GLVEAVKSWTNAFERQKAINENIIVPQRGFDIEFDKSMDRIQELEDE 798
Query: 856 LTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNI 915
L + L RK ++I Y GK++Y +E+P S +VP ++ ++ K + RY++ +
Sbjct: 799 LMEILMTYRKQFKCSNIQYKDSGKEIYTIEIPISATKNVPSNWVQMAANKTYKRYYSDEV 858
Query: 916 KKLLGELSQAESEKESALKSILQRLIGQFCEHHNK-WRQMVAATAELDALISLAIASDFY 974
+ L +++A+ ++ + + RL +F H+N W + A + +D L+++ S++
Sbjct: 859 RALARSMAEAKEIHKTLEEDLKNRLCQKFDAHYNTIWMPTIQAISNIDCLLAITRTSEYL 918
Query: 975 EGPTCRPVILDSCSNE-----EPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASF 1029
P+CRP I+D ++ ++ KSL HP + +F+PNDI +G
Sbjct: 919 GAPSCRPTIVDEVDSKTNTQLNGFLKFKSLRHPCFNLGATTAKDFIPNDIELGKE-QPRL 977
Query: 1030 ILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQST 1089
LLTG N GKST+LR C+AVI+AQ+G VP E ++P+DRI R+GA D+IM G+ST
Sbjct: 978 GLLTGANAAGKSTILRMACIAVIMAQMGCYVPCESAVLTPIDRIMTRLGANDNIMQGKST 1037
Query: 1090 FLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
F EL+ET +L AT SL+V+DELGRG S+SDG AIA
Sbjct: 1038 FFVELAETKKILDMATNRSLLVVDELGRGGSSSDGFAIA 1076
>sp|P20585|MSH3_HUMAN DNA mismatch repair protein Msh3 OS=Homo sapiens GN=MSH3 PE=1 SV=4
Length = 1137
Score = 279 bits (713), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 226/815 (27%), Positives = 384/815 (47%), Gaps = 78/815 (9%)
Query: 333 QWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQ-YMKGEQPHCGFPERNFSMNV 391
Q+ E K +H D V+ + G Y F DA + A+EL++ ++ P ++V
Sbjct: 235 QYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLFVHV 294
Query: 392 EKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL------ 445
+L KGY+V VV+QTET + ++ + R++ A+ TK TL ++
Sbjct: 295 RRLVAKGYKVGVVKQTETAA----LKAIGDNRSSLFSRKLTALYTKSTLIGEDVNPLIKL 350
Query: 446 --------LSANPDASYLMALTESNQSPASQSTDRCF-GICVVDVATSRIILGQVMDDLD 496
+ + SYL+ ++E+ ++ + F GI V AT ++ D
Sbjct: 351 DDAVNVDEIMTDTSTSYLLCISENKENVRDKKKGNIFIGIVGVQPATGEVVFDSFQDSAS 410
Query: 497 CSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIK 556
S L +S L+PVE++ P+ LS +TE I R T + +D + V +
Sbjct: 411 RSELETRMSSLQPVELLLPS-ALSEQTEALIHRATSVSVQDDRI----------RVERMD 459
Query: 557 NIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLK 616
NIY + + A + G + GI+ + V+ +L + YLK
Sbjct: 460 NIYFEYS-HAFQAVTEFYAKDTVDIKGSQIISGIV-------NLEKPVICSLAAIIKYLK 511
Query: 617 KSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQL 676
+ L++ L + F+ L +K +M ++ L NLE+ +N + G+L L
Sbjct: 512 EFNLEKMLSKPENFKQLS-------SKMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVL 564
Query: 677 NHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERL 736
+H T+FG+R L+ W+ +PL I R DAV+ + + L +LPD+ER
Sbjct: 565 DHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDIERG 624
Query: 737 LARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQ 796
L ++ ++ + ++ + L+ + QA + A+ + +S
Sbjct: 625 LCSIY---------------HKKCSTQEFFLIVKTLYHLKSEFQAI--IPAVNSHIQSDL 667
Query: 797 LHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASL 856
L ++ +P ++S ++H+ + A + + D+ K+ EI+ +
Sbjct: 668 LRTVILE---IPELLSPVEHYLKILNEQAAKVGDKTELFKDLS-DFPLIKKRKDEIQGVI 723
Query: 857 TK---HLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTP 913
+ HL+E RK+L + S YVT+ +++E+ S +P D+ S K R+ +P
Sbjct: 724 DEIRMHLQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRFHSP 783
Query: 914 NIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDF 973
I + L+Q + + + +F EH++ + V A +D + SLA +
Sbjct: 784 FIVENYRHLNQLREQLVLDCSAEWLDFLEKFSEHYHSLCKAVHHLATVDCIFSLAKVAK- 842
Query: 974 YEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLT 1033
+G CRP + EE I K+ HPV+ + ++VPN+ + + +++T
Sbjct: 843 -QGDYCRPTV-----QEERKIVIKNGRHPVIDVLLGEQDQYVPNNTDLS-EDSERVMIIT 895
Query: 1034 GPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTE 1093
GPNMGGKS+ ++QV L I+AQ+G+ VPAE I VD IF RMGA D+I GQSTF+ E
Sbjct: 896 GPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGQSTFMEE 955
Query: 1094 LSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
L++TA ++ AT SLV+LDELGRGTST DG AIA
Sbjct: 956 LTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIA 990
>sp|Q4P6I8|MSH3_USTMA DNA mismatch repair protein MSH3 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=MSH3 PE=3 SV=1
Length = 1154
Score = 268 bits (686), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 236/835 (28%), Positives = 390/835 (46%), Gaps = 86/835 (10%)
Query: 331 QKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNF--- 387
+KQ E K++H ++ ++G + + DA + +KEL + C FPERN
Sbjct: 238 EKQILELKAEHPGVLLIIEVGYKLKFYGEDARIASKELSIM--------C-FPERNLLTA 288
Query: 388 -------SMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGT- 439
++V++L + G++V VV Q ET L+ K + V R++ A+ T T
Sbjct: 289 MIPVHRLHIHVKRLIQAGHKVGVVRQIETRA---LKAASKNAYTPFV-RKLTALYTASTW 344
Query: 440 ---LTEGELLSANPDASY------LMALTESNQSPASQSTDRCFGICVVDVATSRIILGQ 490
L+ + L+AN +Y LMA+ E ++ +Q+ GI V+V T + Q
Sbjct: 345 VDDLSSLDDLAANMGDAYTNQPKSLMAIVEQSERGNAQADRVSIGIVSVEVNTGHLTYDQ 404
Query: 491 VMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPL-----VNDLVPLSEF 545
D S L ++ L P E++ P + P TE+ I N + L + ++
Sbjct: 405 FSDGHARSELETRIAHLAPAEVLIPPQLTKP-TEKVISYLLGNGADGGVRIERLAAMPDY 463
Query: 546 WDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVL 605
A +V Y ES + +E D + + L D S L
Sbjct: 464 NQAFQSV---TRFYRDRGLESPEVPEVPEVPGSSEADTTR----LATTLADGADKRSSPL 516
Query: 606 SALGGTLFYLKKSFLDETLLRFAKFEL----LPCSGFGDMAKKPYMVLDAPALENLEVFE 661
+L +L L L + + F+L + F + + M+L++ L NLE+F
Sbjct: 517 ISLIVSLPQLSLIALAQIIQHLQAFQLESICTLSTNFRSFSSRTTMLLNSNTLANLEIFR 576
Query: 662 NSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFAL 721
+ G+L L+ C +A G+RLLR W++RPL + ++ER DAV LR
Sbjct: 577 TANEQTERGSLIWLLDKCKSAMGRRLLRKWVSRPLTDIDKLQERLDAVEALRDGKSYVLR 636
Query: 722 EFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQA 781
L LPD+ER LAR+ GR + E + L + Q
Sbjct: 637 RLDSVLHGLPDLERGLARM-----TYGRATPT-------------ELATVLLSLNRVTQE 678
Query: 782 CSSLGAILENTESRQLH-HILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDM 840
+ A T+S + H+L+ G + + L + ANN + +D
Sbjct: 679 FKADEAATWKTQSSLIDTHLLSLASGKQVVQTYLNQI--SIKEARANNKADLY----LDA 732
Query: 841 DYDSACKKVKE----IEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPR 896
D A + K+ I+ L +HL+E RKLL S+ YV++ YL+EV + VP
Sbjct: 733 DVFPAIQASKDNMAIIDGELREHLREIRKLLHRPSLDYVSVAGVDYLVEVRVADAKKVPV 792
Query: 897 DYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCE-HHNKWRQMV 955
++ S+ K R+ TP + +L Q + ++A + R + + C+ + R +V
Sbjct: 793 EWLRVSATKSMVRFHTPEVMRLSKIRDQHKETLDAAAQEAFARFVRELCKSEYVVLRNVV 852
Query: 956 AATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLG--HPVLRSDSLGKGE 1013
A+ A LD L+SLA + RPV L + E + + +G H +L + +
Sbjct: 853 ASLAVLDVLLSLAHVAR--AAGYTRPVFLRQPQDAEASVPVEIIGMRHAIL--EVVSAMP 908
Query: 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRI 1073
++PND+++ + + ILL+G NMGGKS+++R + L +I+AQ+G+ V A++ I D +
Sbjct: 909 YIPNDVSLSTGDSGAAILLSGCNMGGKSSVVRALGLVIIMAQIGSFVAADVARIGVHDAV 968
Query: 1074 FVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
+VRMGA+D + +G+ST++ E+SETA +L S T S+V+LDELGRGTS+ DG +A
Sbjct: 969 YVRMGARDRMFSGRSTYMVEVSETADILGSLTSRSMVILDELGRGTSSRDGYCLA 1023
>sp|Q8RA71|MUTS_THETN DNA mismatch repair protein MutS OS=Thermoanaerobacter tengcongensis
(strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
GN=mutS PE=3 SV=1
Length = 869
Score = 264 bits (675), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 243/813 (29%), Positives = 377/813 (46%), Gaps = 126/813 (15%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYM------KGEQPHCGFPER 385
+Q+ + K K+ D ++FF++G FYE+F DA + AKEL++ + P G P
Sbjct: 11 EQYLKIKEKYKDAILFFRLGDFYEMFYEDAEIAAKELEIALTGRDAGTEERAPMAGVPYH 70
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
++KL +KGY+V + EQ E P K KG +VKR++ + T GT+ E
Sbjct: 71 AADFYIDKLVKKGYKVAICEQLEDPS------KAKG----LVKRDVVRIYTPGTIINPES 120
Query: 446 LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLS 505
+ + +YL+++ + +GIC VDV T + ++ + + + ++
Sbjct: 121 MDEKSN-NYLVSVYREKDN---------YGICAVDVTTGELYATEIKNCKNGKRIYDEIA 170
Query: 506 ELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAE 565
+ P EII L + ++ N VN PL+ ++A + ++E
Sbjct: 171 KYSPSEIISNEEFLKNNKYIKVFKNN-NCAVNAYKPLN--YEASSELIE----------- 216
Query: 566 SLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLL 625
+ D V + E V+ +LG L YLK+ L +T L
Sbjct: 217 --KQFDKKVEELELEDKKF-------------------VIHSLGALLSYLKE--LQKTSL 253
Query: 626 RFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGK 685
+ + + + D YM LD+ A+ NLE+ E++R+ G+L L+ VT G
Sbjct: 254 K----HINKLTLYQD---NSYMGLDSNAIRNLEILESNRNKSKKGSLLGVLDRTVTPMGG 306
Query: 686 RLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSE 745
RLL+ WL PL + I +R DAV L N +E ++ L+++ D+ERL ++
Sbjct: 307 RLLKKWLEEPLIDKDEIEKRLDAVEELFN-NYRERIELKELLNKVYDLERLASK------ 359
Query: 746 ANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGK 805
++Y+ K +FIS +L Q + IL SR L I
Sbjct: 360 ---------IVYQSVTPK---DFIS----IKLSLQNLPKIKNILSKFSSRLLKEIYEKLD 403
Query: 806 GLPAIVSIL-KHFKDAFDWVEANNSGRIIPHGGVDM--DYDSACKKVKEIEASLTKHLKE 862
L + ++ K KD D G II G +M A + K A+L +E
Sbjct: 404 VLQDVYELIDKSIKD--DPSNQLKEGNIIKDGYNEMVDKLRKASTEGKNWIANLEADERE 461
Query: 863 QRKLLGDTSITYVTIGKDL---YLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLL 919
+ T I + IG + Y +EV +S VP Y + + RY TP +K++
Sbjct: 462 K------TGIKNLRIGYNKVFGYYIEVTKSNIPQVPDRYIRKQTLANAERYVTPELKEIE 515
Query: 920 GELSQAES---EKESAL-KSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYE 975
+ AE E E L I +++ Q N + + A +D LIS A ++
Sbjct: 516 ETILGAEEKLIELEYELFNEIREKVELQIVRIQNTAKYI----AIIDVLISFAEVAE--T 569
Query: 976 GPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGP 1035
+P++ + E I K HPV+ +++ FV NDI IG +++TGP
Sbjct: 570 NKYVKPIV-----DYEDRIVIKEGRHPVV--ETISDEGFVANDIDIGPEN--PIMIITGP 620
Query: 1036 NMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELS 1095
NM GKST +RQV L V++AQVG VPA I VD+IF R+GA D I AGQSTF+ E+S
Sbjct: 621 NMAGKSTYMRQVALIVLMAQVGCFVPASYARIGIVDKIFTRVGASDDIFAGQSTFMVEMS 680
Query: 1096 ETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
E A +L SAT SL++LDE+GRGTST DG +IA
Sbjct: 681 EVANILHSATSKSLIILDEVGRGTSTYDGMSIA 713
>sp|A4J5Q6|MUTS_DESRM DNA mismatch repair protein MutS OS=Desulfotomaculum reducens (strain
MI-1) GN=mutS PE=3 SV=1
Length = 868
Score = 263 bits (672), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 249/821 (30%), Positives = 381/821 (46%), Gaps = 128/821 (15%)
Query: 327 LSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYM---KGE---QPHC 380
L+ +Q+ + K +H + ++FF++G FYE+F DA + ++EL++ GE P C
Sbjct: 3 LTPMMQQYLDIKKQHPNTILFFRLGDFYEMFFEDAKLASQELEITLTGRDAGEPERVPMC 62
Query: 381 GFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTL 440
G P + KL KGY+V + EQ E P + KG +VKRE+ V+T GTL
Sbjct: 63 GVPFHAADSYISKLIEKGYKVAICEQVEDP------KVTKG----IVKREVIRVITPGTL 112
Query: 441 TEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVL 500
+G +LS D +YL+A++++ S++ C G+ V D++T + ++ L
Sbjct: 113 MDGSMLS-EKDNNYLVAISQT-------SSNNC-GMAVADLSTGLFQVTEMEGHWSLESL 163
Query: 501 CCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYN 560
+ L P E+ +L+P+ ++ H + + +P + F TT+ E + + +
Sbjct: 164 LDEILRLTPREV-----LLTPDLKK----HEKTVQAFNFLPSTVF----TTLEETQQVSD 210
Query: 561 RITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFL 620
I E LN ++ + C+ A G L YL +
Sbjct: 211 YI--ELLNNQFGQKVSAVYKDRPAVCM-------------------AAGILLQYLINT-- 247
Query: 621 DETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCV 680
K +L + + + YM+LD A NLE+ ++ R GD GTL L+
Sbjct: 248 -------QKRQLNHITEITAYSPRAYMMLDGIARRNLEISKSLRDGDKRGTLLWVLDATK 300
Query: 681 TAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALE-FRKALSRLPDMERLLAR 739
TA G R+L+ WL +PL ++ I+ER DAV L VN E AL ++ D+ERL AR
Sbjct: 301 TAMGGRMLKNWLEQPLIDTLKIQERLDAVEEL--VNSILLREEISGALKQIYDLERLAAR 358
Query: 740 LFASSEANGRNSNKVVLYEDAAKKQLQEFISALHG-CELMDQACSSLGAILENTESRQLH 798
A ANGR+ + AL G E + +L A+ S +L
Sbjct: 359 A-AYGSANGRD------------------MIALRGSLEKLPFIHDALAAV----SSTRLK 395
Query: 799 HILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGV-----DMDYD---SACKKVK 850
I T + L + D A N + GG+ D + D +A + K
Sbjct: 396 RIYTE-------FNTLSDLRKVLDLALAENPPVSLRDGGLIKDGFDQEVDQLRNAARDGK 448
Query: 851 EIEASLTKHLKEQRKLLGDTSITYVTIGKDL---YLLEVPESLRGSVPRDYELRSSKKGF 907
A L KE +T I + +G + Y LEV + VP Y+ R +
Sbjct: 449 TWLAGLEAREKE------NTGIKNLKVGFNKVFGYYLEVTRANLSMVPEYYQRRQTLANA 502
Query: 908 FRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISL 967
R+ TP +K+ + AE ++ + + + ++ A +E+DAL+SL
Sbjct: 503 ERFITPELKEYESMILGAEDRLVELEYNLFVAIRAKVAAEVSSIQKTAALLSEIDALVSL 562
Query: 968 AIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNA 1027
A + RP + D+ I K HPV+ ++ G G FVPND T
Sbjct: 563 AEVA--VRNGFVRPEVTDNG-----IIEIKDGRHPVV-ENTQGLGGFVPND-TYLDIKEE 613
Query: 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQ 1087
L+TGPNMGGKST RQV L V++AQVG+ VPA+ I VDRIF R+GA D + +GQ
Sbjct: 614 RLCLITGPNMGGKSTYQRQVALIVLMAQVGSFVPAQRARIGIVDRIFARVGASDDLTSGQ 673
Query: 1088 STFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
STF+ E+ ET ++ AT SLV++DELGRGTS +G AIA
Sbjct: 674 STFMVEMYETKQIIDHATAKSLVIIDELGRGTSNLEGMAIA 714
>sp|P13705|MSH3_MOUSE DNA mismatch repair protein Msh3 OS=Mus musculus GN=Msh3 PE=2 SV=3
Length = 1091
Score = 261 bits (668), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 226/817 (27%), Positives = 378/817 (46%), Gaps = 86/817 (10%)
Query: 333 QWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQ-YMKGEQPHCGFPERNFSMNV 391
Q+ + K +H D V+ + G Y F DA + A+EL++ ++ P ++V
Sbjct: 193 QYLDMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLFVHV 252
Query: 392 EKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELL----- 446
+L KGY+V VV+QTET + +K V R++ A+ TK TL GE +
Sbjct: 253 RRLVAKGYKVGVVKQTETAALKAI----GDNKSSVFSRKLTALYTKSTLI-GEDVNPLIR 307
Query: 447 ---SANPD-------ASYLMALTESNQSPASQST-DRCFGICVVDVATSRIILGQVMDDL 495
S N D +YL+ + E ++ + + G+ V AT ++ D
Sbjct: 308 LDDSVNIDEVMTDTSTNYLLCIYEEKENIKDKKKGNLSVGVVGVQPATGEVVFDCFQDSA 367
Query: 496 DCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEI 555
L +S L+PVE++ P+++ P TE I R T + +D + + T E
Sbjct: 368 SRLELETRISSLQPVELLLPSDLSEP-TEMLIQRATNVSVRDDRIRVERM---NNTYFEY 423
Query: 556 KNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYL 615
+ + +T A + G L G++ + V+ AL + YL
Sbjct: 424 SHAFQTVT--------EFYAREIVDSQGSQSLSGVI-------NLEKPVICALAAVIRYL 468
Query: 616 KKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQ 675
K+ L++ L + F+ L SG +M ++ L NLE+ +N + G+L
Sbjct: 469 KEFNLEKMLSKPESFKQLS-SGM------EFMRINGTTLRNLEMVQNQTDMKTKGSLLWV 521
Query: 676 LNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMER 735
L+H T+FG+R L+ W+ +PL I R DAV+ + + L +LPD+ER
Sbjct: 522 LDHTKTSFGRRKLKNWVTQPLLKLREINARLDAVSDVLHSESSVFEQIENLLRKLPDVER 581
Query: 736 LLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHG-CELMDQACSSLGAILENTES 794
L ++ K QEF + C+L + + + A+ + +S
Sbjct: 582 GLCSIYHK------------------KCSTQEFFLIVKSLCQLKSELQALMPAVNSHVQS 623
Query: 795 RQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKK---VKE 851
L ++ ++S ++H+ + A + + D+ K+ ++E
Sbjct: 624 DLLRALIV------ELLSPVEHYLKVLNGPAAKVGDKTELFKDLS-DFPLIKKRKNEIQE 676
Query: 852 IEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYW 911
+ S+ L+E RK+L S+ YVT+ +++E+ S +P D+ S K R+
Sbjct: 677 VIHSIQMRLQEFRKILKLPSLQYVTVSGQEFMIEIKNSAVSCIPADWVKVGSTKAVSRFH 736
Query: 912 TPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIAS 971
P I + L+Q + + + F EH++ + V A +D + SLA +
Sbjct: 737 PPFIVESYRRLNQLREQLVLDCNAEWLGFLENFGEHYHTLCKAVDHLATVDCIFSLAKVA 796
Query: 972 DFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFIL 1031
+G CRP + EE I K+ HP++ + +FVPN ++ + ++
Sbjct: 797 K--QGNYCRPTL-----QEEKKIIIKNGRHPMIDVLLGEQDQFVPNSTSLSD--SERVMI 847
Query: 1032 LTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFL 1091
+TGPNMGGKS+ ++QV L I+AQ+G+ VPAE I VD IF RMGA D+I G+STF+
Sbjct: 848 ITGPNMGGKSSYIKQVTLVTIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFM 907
Query: 1092 TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
+L++TA ++ A+ SLV+LDELGRGTST DG AIA
Sbjct: 908 EQLTDTAEIIRRASPQSLVILDELGRGTSTHDGIAIA 944
>sp|Q67NK1|MUTS_SYMTH DNA mismatch repair protein MutS OS=Symbiobacterium thermophilum
(strain T / IAM 14863) GN=mutS PE=3 SV=1
Length = 875
Score = 256 bits (654), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 249/818 (30%), Positives = 366/818 (44%), Gaps = 132/818 (16%)
Query: 333 QWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYM-------KGEQPHCGFPER 385
Q+ + K ++ D ++F+++G FYE F DA + A+EL+L G P G P
Sbjct: 12 QYLQIKEQYPDCILFYRLGDFYETFMDDAELVARELELVLTGRDAGKDMGRVPMAGIPYH 71
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ +L KGY+V + +Q E P +K KG +VKR++ VVT GTL E L
Sbjct: 72 AAEAYIARLIEKGYKVAICDQLEDP------KKAKG----LVKRDVTRVVTPGTLVEPRL 121
Query: 446 LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLS 505
L + ++L A+ S FG+ VVD++T Q+ +L +
Sbjct: 122 LPEKAN-NFLAAIAWSRTG---------FGLAVVDLSTGEFAAAQMNGADSLRLLLEEIG 171
Query: 506 ELRPVEII-KPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITA 564
L P E+I +P P PL + +S F E N Y ++T
Sbjct: 172 RLEPREVILEPGLAAEPSVT--------GPLKASGIAVSVF---EGRHFNHANAYRKLT- 219
Query: 565 ESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETL 624
E G L G E + L + ++L+E
Sbjct: 220 ---------------EHFGTANLSGFGCEDLE-----------LATSAAGAALAYLEE-- 251
Query: 625 LRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFG 684
K L SG YMVLD NLE+ + R G GTL ++ VTA G
Sbjct: 252 --MHKASLGHVSGLAVYYPGDYMVLDPATRRNLELTRSLRDGGRRGTLLWVMDRTVTAMG 309
Query: 685 KRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQP-FALEFRKALSRLPDMERLLARLFAS 743
RLL++WL RPL + I R +AV L V++P + R L + D+ERL R+ A
Sbjct: 310 ARLLKSWLERPLLDLRQIHARHEAVGEL--VHRPVLRADLRALLQEVHDLERLAGRV-AV 366
Query: 744 SEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTP 803
AN R+ A K+ L A S+ LE+ + +L +
Sbjct: 367 GSANARDLV-------ALKQSLV--------------ALPSIRVALEDVRAERLVELRDQ 405
Query: 804 GKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMD-----YDSACKKVKEIEASLTK 858
+ +L +D + A+ + GG+ D D + ++ +A + +
Sbjct: 406 -------LDMLDDVRDLIEHAIADEPPVALTEGGILKDGFHPEVDELRRIARDGKAWIAQ 458
Query: 859 HLKEQRKLLGDTSITYVTIGKDL---YLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNI 915
+R+ T I + IG + Y L V + VP DY + + R+ TP +
Sbjct: 459 VEARERE---RTGIKSLKIGYNKVFGYYLAVTKPNLPLVPPDYIRKQTLANEERFITPEL 515
Query: 916 KKLLGELSQAESEKESALK-----SILQRLIGQFCEHHNKWRQMVAATAELDALISLAIA 970
K+L ++ A +E+ L+ I QR+ + R A AELDAL S A
Sbjct: 516 KELEEKVLHA-AERVMDLEYELFVEIRQRVAAEVTRIQRSAR----AVAELDALASFAEV 570
Query: 971 SDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFI 1030
+ Y CRP++ S + K HPVL + +G FVPND+ + G +
Sbjct: 571 ASLY--GYCRPLVDGST-----VLELKGSRHPVLER-VMEEGAFVPNDLLVDT-GENRVL 621
Query: 1031 LLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTF 1090
L+TGPNMGGKST++RQ LAVILAQ G+ VPAE I VDR+F R+GA D + G+STF
Sbjct: 622 LITGPNMGGKSTVMRQAALAVILAQAGSFVPAESAHIGLVDRVFTRVGASDDLATGRSTF 681
Query: 1091 LTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
+ E++E A +L SAT SLVVLDE+GRGT+T DG +IA
Sbjct: 682 MVEMTEVANILHSATERSLVVLDEVGRGTATFDGLSIA 719
>sp|O65607|MSH3_ARATH DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana GN=MSH3 PE=1
SV=2
Length = 1081
Score = 255 bits (651), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 240/879 (27%), Positives = 392/879 (44%), Gaps = 106/879 (12%)
Query: 325 RNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDL-QYMKGEQPHCGFP 383
R + ++Q E KSK+ D V+ ++G Y F DA + A+ L + +M P
Sbjct: 102 RKYTPLEQQVVELKSKYPDVVLMVEVGYRYRFFGEDAEIAARVLGIYAHMDHNFMTASVP 161
Query: 384 ERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEG 443
+ +V +L GY++ VV+QTET + ++ R + A+ TK TL
Sbjct: 162 TFRLNFHVRRLVNAGYKIGVVKQTETAAI----KSHGANRTGPFFRGLSALYTKATLEAA 217
Query: 444 ELLSAN--------PDASYLMAL------TESNQSPASQSTDRCFGICVVDVATSRIILG 489
E +S +++L+ + +E+ S D G+ V+++T ++
Sbjct: 218 EDISGGCGGEEGFGSQSNFLVCVVDERVKSETLGCGIEMSFDVRVGVVGVEISTGEVVYE 277
Query: 490 QVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEF--WD 547
+ D+ S L ++ L P E++ LS +TE+ ++ H P N V + +
Sbjct: 278 EFNDNFMRSGLEAVILSLSPAELLL-GQPLSQQTEKFLVAHA-GPTSNVRVERASLDCFS 335
Query: 548 AETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSA 607
V E+ ++ +I+A +L D +A G++CL + + + + A
Sbjct: 336 NGNAVDEVISLCEKISAGNLE--DDKEMKLEAAEKGMSCL-----TVHTIMNMPHLTVQA 388
Query: 608 LGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGD 667
L T +LK+ + L + A F ++ M L A L+ LEV +N+ G
Sbjct: 389 LALTFCHLKQFGFERILYQGASFR--------SLSSNTEMTLSANTLQQLEVVKNNSDGS 440
Query: 668 SSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGL--------------- 712
SG+L+ +NH +T +G RLLR W+ PL + LI R DAV+ +
Sbjct: 441 ESGSLFHNMNHTLTVYGSRLLRHWVTHPLCDRNLISARLDAVSEISACMGSHSSSQLSSE 500
Query: 713 -------RGVNQP-FALEFRK---ALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAA 761
R + P F L A+SR D++R + R+F +
Sbjct: 501 LVEEGSERAIVSPEFYLVLSSVLTAMSRSSDIQRGITRIFHRT----------------- 543
Query: 762 KKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKH---FK 818
+ EFI+ + L + LG I +++E R + L ++S++
Sbjct: 544 -AKATEFIAVMEAILLAGKQIQRLG-IKQDSEMRSMQSATVRSTLLRKLISVISSPVVVD 601
Query: 819 DAFDWVEANNSGRIIPHGGVDMDYDS---------ACKKVKEIEASLTKHLKEQRKLLGD 869
+A + A N + +D+ S A + V I L + RK L
Sbjct: 602 NAGKLLSALNKEAAVRGDLLDILITSSDQFPELAEARQAVLVIREKLDSSIASFRKKLAI 661
Query: 870 TSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEK 929
++ ++ + +L+E+P + VP ++ +S K RY P I L EL+ A
Sbjct: 662 RNLEFLQVSGITHLIELP--VDSKVPMNWVKVNSTKKTIRYHPPEIVAGLDELALATEHL 719
Query: 930 ESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSN 989
++ + F ++ ++ V A A LD L SL+ S RP +D C
Sbjct: 720 AIVNRASWDSFLKSFSRYYTDFKAAVQALAALDCLHSLSTLSR--NKNYVRPEFVDDCEP 777
Query: 990 EEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049
E I+ +S HPVL +++ + FVPND + G I+ TGPNMGGKS +RQV L
Sbjct: 778 VE--INIQSGRHPVL--ETILQDNFVPNDTILHAEGEYCQII-TGPNMGGKSCYIRQVAL 832
Query: 1050 AVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSL 1109
I+AQVG+ VPA ++ +D +F RMGA D I G+STFL ELSE + ++ + + SL
Sbjct: 833 ISIMAQVGSFVPASFAKLHVLDGVFTRMGASDSIQHGRSTFLEELSEASHIIRTCSSRSL 892
Query: 1110 VVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFI 1148
V+LDELGRGTST DG AIA + Q L + LF+
Sbjct: 893 VILDELGRGTSTHDGVAIAY--ATLQHLLAEKRCLVLFV 929
>sp|A6RPB6|MSH3_BOTFB DNA mismatch repair protein msh3 OS=Botryotinia fuckeliana (strain
B05.10) GN=msh3 PE=3 SV=2
Length = 1133
Score = 252 bits (644), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 232/842 (27%), Positives = 364/842 (43%), Gaps = 116/842 (13%)
Query: 333 QWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG-----EQP---HCGF-- 382
Q + K KHMD ++ ++G ++ F DA AK L + + G E P H +
Sbjct: 216 QVIDIKRKHMDTLLIVEVGYKFKFFGEDARTAAKVLSIVCIPGKFRFDEHPSESHLNYFA 275
Query: 383 ----PERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKG 438
P ++ ++L GY++ +V QTET +K +++ R++ V TKG
Sbjct: 276 SASIPVHRLPVHAKRLVAAGYKIGIVRQTETAAL----KKAGDNRNAPFVRKLTNVYTKG 331
Query: 439 TL--------TEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQ 490
T T P YL+ +TE+ GI V AT +I
Sbjct: 332 TYIDDIDGLDTTDAPSGGAPATGYLLCITETKAKGWGTDEKVEVGILAVQPATGDVIYDN 391
Query: 491 VMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAI--LRHTRNPLVNDLVPLSEFWDA 548
D L L + P E++ L+ T++ + L + + D + + +
Sbjct: 392 FEDGFMRGELETRLLHIAPCELL-IVGELTKATDKLVQHLSGSSTNVFGDRIRVERVGKS 450
Query: 549 ETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSAL 608
+T E Y+R+ +K ++ +++ A L L +++ + + LSA+
Sbjct: 451 KTMAAES---YSRVAQFYADKLKAHQSSNNAREQEL------LEKVLKLTEPVTICLSAM 501
Query: 609 GGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDS 668
+ ++ + L E + K+ F + + +M+L+ L +LE++ N
Sbjct: 502 ---ITHMTEYGL-EHVFDLTKY-------FQSFSARSHMLLNGNTLTSLEIYTNQTDYTQ 550
Query: 669 SGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLR-GVNQPFALEFRKAL 727
G+L+ L+ T FG+RLLR W+ RPL + + ER AV L+ N P + L
Sbjct: 551 KGSLFWTLDKTQTKFGQRLLRKWVGRPLLDKQRLEERVAAVEELKDNANTPKVDKLNATL 610
Query: 728 SRL-PDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLG 786
+ D+ER L R++ Y + +L + +
Sbjct: 611 REVRSDLERSLLRIY---------------YGKCTRPELLTVLQTMQRI----------- 644
Query: 787 AILENTESRQLHHILTPGKG-------------LPAIVSILKHFKDAFDWVEANNSGR-- 831
+ + H+ TP LPAI I+ F D + A N +
Sbjct: 645 -------ANEFAHVKTPSDAGFESIALNEAVASLPAIGEIVISFLDKINAQAARNDDKYA 697
Query: 832 -IIPHGGVDMDYDSACKKVKEIEASLTKH-LKEQRKLLGDTSITYVTIGKDLYLLEVPES 889
+ H + D C + +E L H + KL T +TYVTI YL+EVP +
Sbjct: 698 FFLEHYETEAIGDHKCG-IGAVEQDLEAHRMVAATKLSKKTPVTYVTIAGIEYLIEVPNT 756
Query: 890 LRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHN 949
+VP + S K R+ TP + K L E Q + SA + + + H+
Sbjct: 757 DLKNVPASWAKISGTKKMSRFHTPEVIKFLRERDQHKESLSSACDAAFSTFLSEISTHYA 816
Query: 950 KWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSL 1009
R ++ A LD L+SLA + C+P S IS HP++ + L
Sbjct: 817 LIRDTISHLATLDCLLSLATVASL--PGYCKPTFTSSTE-----ISVIGGRHPMV--EQL 867
Query: 1010 GKGEFVPNDITIGG---HGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFE 1066
++PND ++ H A +LLTGPNMGGKS+ +RQV L ILAQ+G+ VPAE
Sbjct: 868 LPSAYIPNDTSLSTSPDHTRA--LLLTGPNMGGKSSYVRQVALISILAQIGSYVPAESAR 925
Query: 1067 ISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQA 1126
+ +D I+ RMGA D + QSTF+ ELSETA +L SA SLV+LDELGRGTST DG A
Sbjct: 926 LGLLDGIYTRMGAYDSLFTAQSTFMVELSETASILKSAGPRSLVILDELGRGTSTHDGVA 985
Query: 1127 IA 1128
IA
Sbjct: 986 IA 987
>sp|A7TTQ1|MSH3_VANPO DNA mismatch repair protein MSH3 OS=Vanderwaltozyma polyspora (strain
ATCC 22028 / DSM 70294) GN=MSH3 PE=3 SV=1
Length = 1023
Score = 250 bits (639), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 236/838 (28%), Positives = 386/838 (46%), Gaps = 132/838 (15%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG---------------E 376
+Q + K HMDK++ ++G Y+ F DA + +K L + + G +
Sbjct: 140 QQVKDLKLLHMDKILVIRVGYKYKCFAQDAEIVSKILHIMLIPGKLTIDESNPQDSNYRQ 199
Query: 377 QPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVT 436
+C FP+ +++E L +V VVEQ+ET + SK+ V +R+I V T
Sbjct: 200 FAYCSFPDIRLKVHLETLVHNNLKVAVVEQSETSAIK--KNSNASSKNSVFERKISGVYT 257
Query: 437 KGTLTEGELLSANP-------DASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILG 489
K T S+N ++ +++ +E ++ +S F + V++ + II
Sbjct: 258 KATFGINSAFSSNRKNVLGQYNSIWIINFSEIDKINSS------FFMISVNLNSGEII-- 309
Query: 490 QVMDDLDCSV-----LCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSE 544
D +CS L + L P+E++ + + PE + L + N + L E
Sbjct: 310 --YDTFECSTTSIENLETRIKYLNPIEVLTVSAL--PEKVKLRLHGS-----NSTILLKE 360
Query: 545 FWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQV 604
D + ++E +NK+ + G + S
Sbjct: 361 KEDIDKEIME-----------EINKS-------------------------TKGLNLSAE 384
Query: 605 LSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSR 664
L L L+ + +E LL L + A K +MVL+A A+E+L +F
Sbjct: 385 LFELVPVLYKYLTEYNNEELL-------LISENYKPFASKKHMVLNAAAIESLGIF--GE 435
Query: 665 SGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAV-AGLRGVNQPFALEF 723
G G+L+ L+H T+FG R LR W+ PL + I +R DAV + V+ F
Sbjct: 436 EG-GKGSLFWLLDHTRTSFGSRKLREWILHPLLDKKEIEDRLDAVDCIIHEVSNIFFESL 494
Query: 724 RKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFIS--ALHGCELMDQA 781
K L+ +PD+ R + R+ A G S K + Y KQ++ F LH L Q
Sbjct: 495 NKMLTNVPDLLRTINRI-----AYGTTSRKEIYY---FLKQMKSFSDHFQLHSNYLNSQV 546
Query: 782 CSSLGAILENTESRQLHHILTP-GKGLPAI-VSILKHFKDAFDWVEANNSGRIIPHGGVD 839
S+ G I + S L ++LT GL I + + + +E + ++ ++
Sbjct: 547 VSNDGRI--HKSSALLTNLLTEITSGLKEINIENILSMINVSSVMEKDTYKQVSEFFNLN 604
Query: 840 MDYDSACKKVK------EIEASLTKHLKEQRKLLGDTSITYVTIGKDL--YLLEVPESLR 891
YD A + +K E++ L + L RK+L + Y KD YL+EV +
Sbjct: 605 Y-YDHAEEIIKIQGNINEVKNELAEELSSIRKILKRPHLNY----KDEMDYLIEVRNTQT 659
Query: 892 GSVPRDYELRSSKKGFFRYWTPNIKKLLGELS-QAESEKESALKSILQRLIGQFCEHHNK 950
+P D+ + + K RY TP +KL+ +L Q + + K Q + + +
Sbjct: 660 KGLPSDWIVVNRTKMISRYHTPTSRKLIEKLQYQKDILYQETQKEYFQ-FVKRIKNDYFA 718
Query: 951 WRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLG 1010
+++ A D + LA+AS RPV+ D E +I AK+ +P++ S +
Sbjct: 719 LNKIINHIATYDCI--LALASTSQNMNYVRPVLTD----ESQFIDAKNARNPIIESLDIN 772
Query: 1011 KGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPV 1070
+VPND+ + H F+++TGPNMGGKS+ +RQV L VILAQVG+ VPA+ + S
Sbjct: 773 ---YVPNDVNLS-HSAGKFLIITGPNMGGKSSYIRQVALLVILAQVGSYVPADFMKTSIF 828
Query: 1071 DRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
D+I R+GA D+++ GQSTF EL E ++ + T NSL++LDE+GRGTST DG+AI+
Sbjct: 829 DKILTRIGAYDNLLKGQSTFKVELLEIQNIIKNKTENSLLLLDEVGRGTSTEDGKAIS 886
>sp|Q2UT70|MSH3_ASPOR DNA mismatch repair protein msh3 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=msh3 PE=3 SV=1
Length = 1111
Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 228/841 (27%), Positives = 380/841 (45%), Gaps = 96/841 (11%)
Query: 325 RNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG-----EQPH 379
R L+ +KQ + K KHMD V+ ++G + F DA AKEL++ + G E P
Sbjct: 196 RKLTPMEKQVIDIKRKHMDTVLVVEVGYKFRFFGEDARTAAKELNIVCIPGKFRFDEHPS 255
Query: 380 ---------CGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKRE 430
P ++V++L G++V VV Q ET + +++ R+
Sbjct: 256 EAHLDRFASASIPVHRLHVHVKRLVSAGHKVGVVRQMETAAL----KAAGDNRNAPFGRK 311
Query: 431 ICAVVTKGTLT------EGELLSANPDAS-----YLMALTESNQSPASQSTDRCFGICVV 479
+ + TKGT EG S + + Y++ +TE+N GI V
Sbjct: 312 LTNLYTKGTYIDDMEGLEGSTASMSATGTSMATGYMLCITETNTKGWGNDEKVLVGIVAV 371
Query: 480 DVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAI--LRHTRNPLVN 537
AT I+ + D S + L L P E++ + LS TE+ + L +
Sbjct: 372 QPATGDIVYDEFEDGFMRSEIETRLLHLAPCEVLIVGD-LSKATEKLVQHLSGNKTNAFG 430
Query: 538 DLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELIST 597
D + + A+T E + + AE + K + A + + L L ++++
Sbjct: 431 DEIRVERAPKAKTAAAESHSHVSSFYAERMKKVN---ATNDVQASSL------LQKVLNL 481
Query: 598 GDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENL 657
+ + LS++ + ++ + L E + + K+ F + + +M+L+A L +L
Sbjct: 482 SEQATICLSSM---IKHMSEYGL-EHVFQLTKY-------FQHFSSRSHMLLNANTLNSL 530
Query: 658 EVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQ 717
E++ N + G+L+ L+ T FG+R+LR W+ RPL N + ER DAV L+ + +
Sbjct: 531 EIYHNQTDHSTKGSLFWTLDRTQTRFGQRMLRKWVGRPLLNKLGLEERVDAVEELKNLER 590
Query: 718 PFALEFRKAL-SRL-PDMERLLARLFASS----EANGRNSNKVVLYEDAAKKQLQEFISA 771
+E K L R+ D+E+ L R++ E ++ ++ A +Q
Sbjct: 591 VALVEQMKCLLGRIKTDLEKSLIRVYYGKCTRPELLTLLQTLQMIAQEFAG--VQSPADT 648
Query: 772 LHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWV-EANNSG 830
L+ +A +SL ILE+ + L I D +++ E+ +
Sbjct: 649 GFSSPLISKAVASLPTILEDVV-----------RFLDKINMHAAKNDDKYEFFRESEETD 697
Query: 831 RIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPE-- 888
I H + +E L +H ++LG + YVT+ YL+ V
Sbjct: 698 EITEHK----------LGIGAVEHDLEEHRSTAGEILGKRKVDYVTVAGIEYLIAVENKS 747
Query: 889 -SLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEH 947
S++ VP + S K R+ TP + +LL + Q + + + +
Sbjct: 748 PSIK-KVPASWVKISGTKAVSRFHTPEVIRLLRQRDQHKEALAAGCDKAYATFLAEISAS 806
Query: 948 HNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSD 1007
+ +R V + A LD LISLA ++ +P + I HP++ +
Sbjct: 807 YQSFRDSVQSLATLDCLISLATIAN-------QPGYVKPEYTNHTCIQVDQGRHPMV--E 857
Query: 1008 SLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEI 1067
L +VPNDI + + +L+TGPNMGGKS+ +RQV L I+ Q+G+ VPA ++
Sbjct: 858 QLLLDSYVPNDIDLDSDKTRA-LLVTGPNMGGKSSYVRQVALIAIMGQIGSYVPARSAKL 916
Query: 1068 SPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127
+D +F RMGA D+++AG+STF+ ELSETA +L AT SLV+LDELGRGTST DG AI
Sbjct: 917 GMLDAVFTRMGAFDNMLAGESTFMVELSETADILKQATPRSLVILDELGRGTSTHDGVAI 976
Query: 1128 A 1128
A
Sbjct: 977 A 977
>sp|C1DSR1|MUTS_AZOVD DNA mismatch repair protein MutS OS=Azotobacter vinelandii (strain DJ
/ ATCC BAA-1303) GN=mutS PE=3 SV=1
Length = 855
Score = 245 bits (625), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 250/860 (29%), Positives = 386/860 (44%), Gaps = 166/860 (19%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQ------PHCGFPER 385
+Q+W+ K +H D+++F++MG FYELF DA AK LD+ Q P G P
Sbjct: 12 QQYWKLKREHPDQLMFYRMGDFYELFYEDAKKAAKLLDITLTARGQSAGKSIPMAGIPFH 71
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ + KL + G V + EQ P + V+R++ ++T GT+++ L
Sbjct: 72 SVEGYLAKLVKLGESVAICEQIGDP----------ATTKGPVERQVVRIITPGTVSDEAL 121
Query: 446 LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLS 505
L D N A +R FG+ ++D+ + R + ++ L L
Sbjct: 122 LDERRD----------NLLAAVVGDERLFGLAILDITSGRFNVQEIQG---WENLLAELE 168
Query: 506 ELRPVEIIKPANM---LSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRI 562
L P E++ P + L E R H R P WD + + Y +
Sbjct: 169 RLNPAELLYPDDWPAGLPLEKRRGA--HRRAP-----------WD-----FDFDSAYKSL 210
Query: 563 TAESLNKADSNVANSQAEG---DGLTCLPGILSELISTG-DSGSQVLSALGGTLFYLKKS 618
+ A +G DGL G L++ ++ L L G L+
Sbjct: 211 CQQ--------FATQDLKGFGCDGLGLAIGAAGCLLAYARETQRTALPHLRG----LRHE 258
Query: 619 FLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNH 678
LD+T ++LD + NLE+ N SG TL + ++
Sbjct: 259 RLDDT-----------------------VILDGASRRNLELDVNL-SGGRDNTLQSVIDR 294
Query: 679 CVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALE-FRKALSRLPDMERLL 737
C TA G RLL WL RPL + ++ RQD VA L Q + E + L + D+ER+L
Sbjct: 295 CQTAMGSRLLGRWLNRPLRDRAVLEARQDTVACLL---QDYRFESLQPQLKEIGDVERIL 351
Query: 738 ARLFASSEANGRNSNKVVLYED-AAKKQLQEFISALHGCELMDQACSSLGAILENTESRQ 796
AR+ N R + L + AA QLQ +S L L QA + G I
Sbjct: 352 ARI---GLRNARPRDLARLRDALAALPQLQTALSPLEAPHL--QALA--GNI-------- 396
Query: 797 LHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGV-DMDYDSACKKVKEIEAS 855
+ P + +L+ +N +I GGV YD+ ++ + +
Sbjct: 397 --------RTYPELAELLRR-------AIIDNPPAVIRDGGVLKQGYDAELDELLSLSEN 441
Query: 856 LTKHL------KEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFR 909
+ L ++ R L + + Y I Y +E+P P DY R + KG R
Sbjct: 442 AGQFLMDLEAREKARTGLPNLKVGYNRIHG--YYIELPRVQAEQAPADYIRRQTLKGAER 499
Query: 910 YWTPNIK----KLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALI 965
+ TP +K K L S+A + +++ + +L+ LI Q ++ A AELD L
Sbjct: 500 FITPELKAFEDKALSAKSRALAREKALYEELLEILIAQLA----PLQETATALAELDVLA 555
Query: 966 SLA---IASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIG 1022
+LA + DF RP + EEP + + HPV+ + + FV ND+ +
Sbjct: 556 NLAERALNLDF-----NRPRFV-----EEPCLRIRQGRHPVV--EQVLDTPFVANDLEL- 602
Query: 1023 GHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDH 1082
N +++TGPNMGGKST +RQ L V+LA +G+ VPA+ E+S VDRIF R+G+ D
Sbjct: 603 -DDNTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAQSCELSLVDRIFTRIGSSDD 661
Query: 1083 IMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQF 1142
+ G+STF+ E+SETA +L +A+ SLV++DE+GRGTST DG ++A ++ + LAG +
Sbjct: 662 LAGGRSTFMVEMSETANILHNASERSLVLMDEVGRGTSTFDGLSLAWAAA--EHLAGLRA 719
Query: 1143 LSTLFIKCNAVDCFQLTITA 1162
TLF A F+LT+ A
Sbjct: 720 W-TLF----ATHYFELTVLA 734
>sp|Q3JCL5|MUTS_NITOC DNA mismatch repair protein MutS OS=Nitrosococcus oceani (strain ATCC
19707 / NCIMB 11848) GN=mutS PE=3 SV=1
Length = 863
Score = 244 bits (623), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 241/812 (29%), Positives = 373/812 (45%), Gaps = 127/812 (15%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMK-----GEQ-PHCGFPER 385
+Q+ K+++ + ++ ++MG FYELF DA ++ LD+ GE P G P
Sbjct: 15 QQYLRIKAEYPNTLLLYRMGDFYELFYDDAQRASELLDIALTSRGRSAGEPIPMAGIPYH 74
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ +L R+G V + EQ P KG V+R++ ++T GT+TE L
Sbjct: 75 ALDSYLARLVRQGESVAICEQIGNPA------ASKGP----VERQVVRIITPGTVTEEAL 124
Query: 446 LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLS 505
L A D N A Q FG V+D+ + R + +V + + S
Sbjct: 125 LEARRD----------NLLAALQKEGDVFGFAVLDLCSGRFNILEVASESAAT------S 168
Query: 506 ELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAE 565
EL I+PA +L E IL ++ V +P ++D E+ ++ +
Sbjct: 169 EL---ARIRPAELLVSEDLALILVDSKTEAVVRPLP-PWYFDRESAQRQLCRQF------ 218
Query: 566 SLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLL 625
G L G E + T ++A G L Y++ D
Sbjct: 219 -----------------GTQDLAGFGCEEMKTA------IAAAGCLLHYVQ----DTQRT 251
Query: 626 RFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSS-GTLYAQLNHCVTAFG 684
+F L ++ ++LD NLE+ E S SGDS TL A L+H TA G
Sbjct: 252 QFPHIHALQVE-----RQETSIILDPSTRRNLEL-EESLSGDSGRNTLIAVLDHTATAMG 305
Query: 685 KRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASS 744
RLLR +L RPL + L+++RQ A+A L + + + L + D+ER+L+R
Sbjct: 306 SRLLRRYLHRPLRDQTLLKQRQQALATL--LEGGLSDVLQTLLRGIGDIERILSR----- 358
Query: 745 EANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPG 804
V A + L +F AL + ++ L N +S L +
Sbjct: 359 ----------VALRSARPRDLVQFRQALGLLPKIQESLLQL-----NRDSLLLQSLQEDL 403
Query: 805 KGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGV-DMDYDSACKKVKEIEASLTKHL-KE 862
P + +L+ N +I GGV + +DS +++ + + + L K
Sbjct: 404 GPFPNLHELLQR-------AICENPPVLIRDGGVIALGFDSELDELRHLSGNAGQFLVKL 456
Query: 863 QRKLLGDTSITYVTIGKDL---YLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLL 919
+++ T I + +G + Y LE+ + P DY R + KG RY TP +K
Sbjct: 457 EQRERERTKIPTLKVGYNKVHGYYLEITRAQAHQAPPDYIRRQTLKGAERYITPELK--- 513
Query: 920 GELSQAESEKESAL---KSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEG 976
G Q S +E AL K++ + L+ QF E R A AELD L +LA + E
Sbjct: 514 GFEDQVLSARERALAREKALYEELLEQFMEPLPALRACANALAELDVLHNLAERAKTLE- 572
Query: 977 PTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPN 1036
P++ D +P I + HPV+ + + FVPND+T+ H +++TGPN
Sbjct: 573 -YVAPLLSD-----QPGIFIERGRHPVV--EQTLEDPFVPNDLTL--HEARRMLIITGPN 622
Query: 1037 MGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSE 1096
MGGKST +RQ L V+LA +G+ VPA I P+DRIF R+GA D + G+STF+ E++E
Sbjct: 623 MGGKSTYMRQTALIVLLAHIGSFVPARRAVIGPIDRIFTRIGAADDLAGGRSTFMVEMTE 682
Query: 1097 TALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
TA +L +AT +SLV+LDE+GRGTST DG ++A
Sbjct: 683 TANILHNATEHSLVLLDEVGRGTSTFDGLSLA 714
>sp|Q0CPP9|MSH3_ASPTN DNA mismatch repair protein msh3 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=msh3 PE=3 SV=1
Length = 1117
Score = 244 bits (622), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 222/833 (26%), Positives = 385/833 (46%), Gaps = 87/833 (10%)
Query: 327 LSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG-----EQPH-- 379
L+ ++Q + K KHMDK++ ++G + F DA V AKEL + + G E P
Sbjct: 206 LTPMERQIIDMKRKHMDKILAVQVGYKFRFFGEDARVAAKELSIVCIPGKFRFDEHPSEA 265
Query: 380 -------CGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREIC 432
P ++V++L G++V +V Q ET + +++ R++
Sbjct: 266 HLDRFASASIPVHKLHVHVKRLITAGHKVGIVRQIETAAL----KAAGDNRNAPFVRKLT 321
Query: 433 AVVTKGTLT---EG-----ELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATS 484
V TKGT EG Y++ +TE+N GI V AT
Sbjct: 322 NVYTKGTYIDDMEGLEGPTAGAGTTAATGYMLCITETNAKGWGNDEKVHVGIVAVQPATG 381
Query: 485 RIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAI--LRHTRNPLVNDLVPL 542
I+ D S + L L P E++ + LS +++ + L ++ + D V +
Sbjct: 382 DIVFDDFEDGFMRSEIETRLLHLAPCELLIVGD-LSKASDKLVQHLAGSKMNVFGDKVRV 440
Query: 543 SEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGS 602
++T E + + A+ + A+++ ++QA +L ++++ + S
Sbjct: 441 ERTTKSKTAAAEAHSHVSSFYADKVKSANAS-DDTQASN--------LLQKVLNLPEQVS 491
Query: 603 QVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFEN 662
LS++ + ++ + L E + K+ F + + +M+L+ L +LE+++N
Sbjct: 492 ICLSSM---IKHMTEYGL-EHVFDLTKY-------FQHFSSRSHMLLNGNTLMSLEIYQN 540
Query: 663 SRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALE 722
S G+L+ L+ T FG+RLLR W+ RPL + + ER +A+ L+ + + +E
Sbjct: 541 QTDHSSRGSLFWTLDRTQTRFGQRLLRKWVGRPLLDKSKLEERVNAIEELKSMEKVAMVE 600
Query: 723 -FRKALSRLP-DMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQ 780
+ L + D+E++L R++ Y + +L L G + +
Sbjct: 601 RLKGVLGKAKCDLEKILIRIY---------------YGRCTRPEL------LTGLQTLQM 639
Query: 781 ACSSLGAILENTESRQLHHILTPG-KGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVD 839
G + +S IL LP I+ + F + + A N + +
Sbjct: 640 IAQEFGDVKSPEDSGFTTPILNEAIASLPTILEDVLSFLNKINLHAARNDDKYEFFREAE 699
Query: 840 MDYDSACKK--VKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPE--SLRGSVP 895
D + K + +E L ++ K+LG + I YVT+ YL+EV S VP
Sbjct: 700 ETEDISEHKLGIASVEHELREYQSVAGKILGRSKIQYVTVAGIDYLIEVENNSSYLKRVP 759
Query: 896 RDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMV 955
+ S K R+ +P + KLL + Q + +A L+ + ++ +R V
Sbjct: 760 ASWVKISGTKKLSRFHSPEVIKLLRQRDQHKEALAAACDHAYASLLAEIAANYQPFRDCV 819
Query: 956 AATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFV 1015
+ A +D L+SL+ ++ + +P D+ I + HP++ + L +V
Sbjct: 820 QSLATIDCLLSLSSIAN--QPGYVKPEYADNTC-----IHVEQGRHPMV--EQLLLDSYV 870
Query: 1016 PNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075
PNDI + + +L+TGPNMGGKS+ +RQ+ L I+ QVG+ VPA+ ++ +D +F
Sbjct: 871 PNDINLDSEETRA-LLVTGPNMGGKSSYVRQIALIAIMGQVGSYVPAQSAKLGMLDAVFT 929
Query: 1076 RMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
RMGA D+++AG+STF+ ELSETA +L AT SLV+LDELGRGTST DG AIA
Sbjct: 930 RMGAFDNMLAGESTFMVELSETADILKQATPRSLVILDELGRGTSTHDGVAIA 982
>sp|C0MAS5|MUTS_STRE4 DNA mismatch repair protein MutS OS=Streptococcus equi subsp. equi
(strain 4047) GN=mutS PE=3 SV=1
Length = 851
Score = 243 bits (621), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 234/815 (28%), Positives = 365/815 (44%), Gaps = 135/815 (16%)
Query: 326 NLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQ------PH 379
N+S G +Q+ + K + D + F+MG FYELF DA A+ L++ + P
Sbjct: 5 NVSPGMQQYLDIKKDYPDAFLLFRMGDFYELFYEDAVKAAQILEIGLTSRNKNADNPIPM 64
Query: 380 CGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGT 439
G P + ++ L G++V + EQ E P+Q VVKRE+ V+T GT
Sbjct: 65 AGVPYHSVQQYIDVLIDLGHKVAIAEQMEDPKQ----------AVGVVKREVVQVITPGT 114
Query: 440 LTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSV 499
+ S+ PD+ +N A + +G+ +DV+T D D +
Sbjct: 115 AVD----SSRPDSP-------NNFLVAVDFDGKAYGLSYMDVSTGEFF---ATDLADFAS 160
Query: 500 LCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIY 559
+ + L+ E++ + E E+AIL N L++ E T LE
Sbjct: 161 VKSEIQNLKAKEVLLGFEL--SEEEQAILVKQLNLLLS----------FEMTALE----- 203
Query: 560 NRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSF 619
DS + + Q LT + LSA G L Y+
Sbjct: 204 -----------DSPLIDHQ-----LTAVE----------------LSAAGKLLHYVH--- 228
Query: 620 LDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHC 679
+T LR EL K Y+ + +L++ EN+R+G G+LY L+
Sbjct: 229 --QTQLR----ELSHLQALVHYDIKDYLQMSYATKSSLDLLENARTGKKHGSLYWLLDET 282
Query: 680 VTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRK------ALSRLPDM 733
TA G RLLR W+ RPL S I ERQ+ + Q F F + +L + D+
Sbjct: 283 KTAMGMRLLRAWIDRPLVTSEAILERQEII-------QVFLNAFIERTDLSDSLKGVYDI 335
Query: 734 ERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTE 793
ERL +R+ + G+ + K +L QL ++ + AILE
Sbjct: 336 ERLSSRV-----SFGKANPKDLL-------QLGHTLA----------KVPYIKAILEAFN 373
Query: 794 SRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIE 853
S L ++ LP + +++ D D N G II G D D K ++E
Sbjct: 374 SPYLDKLVNQIDTLPELEHLIRSAIDP-DAPATINEGNII-RTGFDERLDHYRKVMREGT 431
Query: 854 ASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTP 913
+ ++R+ G +++ KD Y V S G VP + +++ K RY T
Sbjct: 432 GWIADIETKERQASGISNLKIDYNKKDGYYFHVTNSNLGMVPDHFFRKATLKNSERYGTA 491
Query: 914 NIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDF 973
+ K+ G++ +A E S I R+ Q + ++ +Q+ A A +D L SLA+ ++
Sbjct: 492 ELAKIEGQMLEAREESSSLEYDIFMRIRAQVETYIDRLQQLAKALATVDVLQSLAVVAE- 550
Query: 974 YEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLT 1033
+ RP+ N+E I+ + H V+ LG E++PN I+ G S L+T
Sbjct: 551 -KNHYVRPLF-----NQESKIAIDNGRHAVVEK-VLGVQEYIPNSISFG--PQTSIQLIT 601
Query: 1034 GPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTE 1093
GPNM GKST +RQ+ L VI+AQ+G+ V AE + D IF R+GA D +++GQSTF+ E
Sbjct: 602 GPNMSGKSTYMRQLALTVIMAQIGSFVAAESASLPLFDAIFTRIGAADDLISGQSTFMVE 661
Query: 1094 LSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
+ E + AT +SL++ DELGRGT+T DG A+A
Sbjct: 662 MMEANHAIKRATPHSLILFDELGRGTATYDGMALA 696
>sp|Q46CE2|MUTS_METBF DNA mismatch repair protein MutS OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=mutS PE=3 SV=1
Length = 900
Score = 243 bits (620), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 251/851 (29%), Positives = 383/851 (45%), Gaps = 127/851 (14%)
Query: 333 QWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYM------KGEQ-PHCGFPER 385
Q++E K + D +IFF+MG FYE F DA AKEL++ GE+ P G P
Sbjct: 11 QYYEAKQAYPDTLIFFRMGDFYESFGEDAKTIAKELEITLTARGKDKSGERMPLAGIPYH 70
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ +L KGY+V + EQ E P +K KG +VKR + VVT GT + +
Sbjct: 71 AIDTYLPRLINKGYKVAICEQLEDP------KKAKG----IVKRGVVRVVTPGTAIDSSM 120
Query: 446 LSANPDAS--YLMALTESNQSPASQSTDRCF--GICVVDVATSRIILGQVMDDLDCSVLC 501
S DAS YLMA+ ++ + F G+ +D++T + Q D + L
Sbjct: 121 FS---DASNNYLMAVAGREIGKPGKNAENEFEIGVSFLDISTGEFLTTQFRDSENFEKLL 177
Query: 502 CLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNR 561
L+ +RP E I P+++ NP L+E A+T V E
Sbjct: 178 SELARMRPSECILPSSLYE------------NP------ALAERLRAQTIVQEFA----- 214
Query: 562 ITAESLNKADSNVANSQAEGDGL------TCLPGILSELISTGDSGSQVLSALGGTLFYL 615
+++ ++ G+ L L G+ E + V SA
Sbjct: 215 ----------PDISGAKEAGERLKNHFRVATLEGMGCENLDFA-----VYSAWAAL---- 255
Query: 616 KKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQ 675
+ T +R EL + + +M+LD+ L NLE+ +N R +LY
Sbjct: 256 --EYAQTTQMR----ELTHINTLRTYSNSEFMILDSVTLRNLEIVKNVRDEGDENSLYRI 309
Query: 676 LNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFA-LEFRKALSRLPDME 734
LNH T G R L+ WL +PL + I R DAV L +P + R LS + D+E
Sbjct: 310 LNHTKTPMGSRALKKWLLKPLLSVEKINYRLDAVEELTA--KPLLRYDLRNWLSDVRDIE 367
Query: 735 RLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTES 794
RL+ R+ NSN ++ ++ E + SL LEN ES
Sbjct: 368 RLVGRVVYG------NSNA------------RDLVALKKSLEALPPVRDSL---LENIES 406
Query: 795 RQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGG-VDMDYDSACKKVKEIE 853
L+ I GL A S L++ + D + + GG + Y++ ++K+I
Sbjct: 407 TILNDIAV---GL-ASFSELENLAEMIDRAIVDEPPISVREGGMIKSGYNAELDELKDIA 462
Query: 854 ASLTKHLKE-QRKLLGDTSITYVTIGKDL---YLLEVPESLRGSVPRDYELRSSKKGFFR 909
++ + + Q+K + I + +G + Y +EV + VP DY + + R
Sbjct: 463 SNSRQWIANFQQKERERSGIKSLKVGYNKIFGYYIEVTNANSSQVPEDYIRKQTMANAER 522
Query: 910 YWTPNIKKLLGELSQAESEKESALK-SILQRLIGQFCEHHNKWRQMVAATAELDALISLA 968
++TP +K+ + A +EK AL+ I ++ H + ++ LD L LA
Sbjct: 523 FFTPELKEKESLILTA-NEKAIALEYEIFTEILQTLSAHSRELQETAERIGTLDVLTDLA 581
Query: 969 IASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNAS 1028
++ RP + D C I + HPV+ ++ G FVPND + N
Sbjct: 582 EVAE--NNNYIRPQLTDDCK-----ILIRDGRHPVV--ENTVHGGFVPNDTEMDCKEN-Q 631
Query: 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQS 1088
F+L+TGPNM GKST +RQ L I+AQVG+ VPA I +D++F R+GA D + +GQS
Sbjct: 632 FLLVTGPNMAGKSTYMRQTALIAIMAQVGSFVPASYASIGIIDQVFTRIGAFDDLASGQS 691
Query: 1089 TFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFI 1148
TF+ E+ E A +L++A+ SLV+LDE+GRGTST DG +IA F G + LF
Sbjct: 692 TFMVEMVELANILNNASPRSLVLLDEIGRGTSTYDGYSIAKAVVEFLHNRGKVGVRALF- 750
Query: 1149 KCNAVDCFQLT 1159
A QLT
Sbjct: 751 ---ATHYHQLT 758
>sp|Q87XW6|MUTS_PSESM DNA mismatch repair protein MutS OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=mutS PE=3 SV=1
Length = 855
Score = 243 bits (620), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 229/819 (27%), Positives = 366/819 (44%), Gaps = 145/819 (17%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQ------PHCGFPER 385
+Q+W+ K++H+D+++F++MG FYE+F DA AK LD+ Q P CG P
Sbjct: 12 QQYWKLKNQHLDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQSIPMCGIPYH 71
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ KL + G V++ EQ P KG D R++ ++T GT+++ L
Sbjct: 72 AAEGYLAKLVKLGESVVICEQIGDPA------TSKGPVD----RQVVRIITPGTISDEAL 121
Query: 446 LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLS 505
L D N A +R FG+ V+D+ + V++ L L
Sbjct: 122 LDERRD----------NLIAAVLGDERLFGLAVLDITSGNF---SVLEIKGWENLLAELE 168
Query: 506 ELRPVEIIKPANM---LSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRI 562
+ PVE++ P + L E R R R P WD E K++ +
Sbjct: 169 RINPVELLIPDDWPQGLPAEKRRGARR--RAP-----------WDFERDSAH-KSLCQQF 214
Query: 563 TAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDE 622
+ + L G CL G E T L L+ LD+
Sbjct: 215 STQDLKGFGCETLTLAIGAAG--CLLGYAKETQRTALPH----------LRSLRHERLDD 262
Query: 623 TLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTA 682
T ++LDA + NLE+ + + SG TL + ++ C TA
Sbjct: 263 T-----------------------VILDAASRRNLEL-DTNLSGGRDNTLQSVMDRCQTA 298
Query: 683 FGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALE-FRKALSRLPDMERLLARLF 741
G RLL WL RPL + +++ RQ ++ + + E + L + D+ER+LAR
Sbjct: 299 MGTRLLTRWLNRPLRDLSILQARQTSITCFL---ERYRFENLQPQLKEIGDIERILAR-- 353
Query: 742 ASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHIL 801
+ +A + L AL + QA + L A L +
Sbjct: 354 -------------IGLRNARPRDLARLRDALSALPELQQAMTDLDA-------PHLQQLA 393
Query: 802 TPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGV-DMDYDSACKKVKEIEASLTKHL 860
P + +L+ + +N +I GGV YD+ +++ + + + L
Sbjct: 394 QTASTYPELADLLQRAIN-------DNPPAVIRDGGVLKTGYDAELDELQSLSENAGQFL 446
Query: 861 KE-QRKLLGDTSITYVTIGKDL---YLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIK 916
+ + + T ++++ +G + Y +E+P P DY R + KG R+ TP +K
Sbjct: 447 IDLEAREKARTGLSHLKVGYNRVHGYFIELPSKQAEQAPADYIRRQTLKGAERFITPELK 506
Query: 917 ----KLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASD 972
K L S+A + ++ +++L+ LIG H + AA AELD L +LA
Sbjct: 507 EFEDKALSAKSRALAREKMLYETLLEDLIG----HLAPLQDTAAALAELDVLSNLA---- 558
Query: 973 FYEGPTCRPVILD-SCSN--EEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASF 1029
R + LD +C EP + + HPV+ + + FV ND+ + +
Sbjct: 559 ------ERALNLDLNCPRFVAEPCMRIEQGRHPVV--EQVLSTPFVANDLALDD--STRM 608
Query: 1030 ILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQST 1089
+++TGPNMGGKST +RQ L V+LA +G+ VPA E+S VDRIF R+G+ D + G+ST
Sbjct: 609 LIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCELSLVDRIFTRIGSSDDLAGGRST 668
Query: 1090 FLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
F+ E+SETA +L +AT SLV++DE+GRGTST DG ++A
Sbjct: 669 FMVEMSETANILHNATDKSLVLMDEVGRGTSTFDGLSLA 707
>sp|P27345|MUTS_AZOVI DNA mismatch repair protein MutS OS=Azotobacter vinelandii GN=mutS
PE=3 SV=1
Length = 855
Score = 241 bits (616), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 249/860 (28%), Positives = 385/860 (44%), Gaps = 166/860 (19%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQ------PHCGFPER 385
+Q+W+ K +H D+++F++MG FYELF DA AK LD+ Q P G P
Sbjct: 12 QQYWKLKREHPDQLMFYRMGDFYELFYEDAKKAAKLLDITLTARGQSAGKSIPMAGIPFH 71
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ + KL + G V + EQ P + V+R++ ++T GT+++ L
Sbjct: 72 SVEGYLAKLVKLGESVAICEQIGDP----------ATTKGPVERQVVRIITPGTVSDEAL 121
Query: 446 LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLS 505
L D N A +R FG+ ++D+ + R + ++ L L
Sbjct: 122 LDERRD----------NLLAAVVGDERLFGLAILDITSGRFNVQEIQG---WENLLAELE 168
Query: 506 ELRPVEIIKPANM---LSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRI 562
L P E++ P + L E R H R P WD + + Y +
Sbjct: 169 RLNPAELLYPDDWPAGLPLEKRRGA--HRRAP-----------WD-----FDFDSAYKSL 210
Query: 563 TAESLNKADSNVANSQAEG---DGLTCLPGILSELISTG-DSGSQVLSALGGTLFYLKKS 618
+ A +G DGL G L++ ++ L L G L+
Sbjct: 211 CQQ--------FATQDLKGFGCDGLGLAIGAAGCLLAYARETQRTALPHLRG----LRHE 258
Query: 619 FLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNH 678
LD+T ++L + NLE+ N SG TL + ++
Sbjct: 259 RLDDT-----------------------VILAGASRRNLELDVNL-SGGRDNTLQSVIDR 294
Query: 679 CVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALE-FRKALSRLPDMERLL 737
C TA G RLL WL RPL + ++ RQD VA L Q + E + L + D+ER+L
Sbjct: 295 CQTAMGSRLLGRWLNRPLRDRAVLEARQDTVACLL---QDYRFESLQPQLKEIGDVERIL 351
Query: 738 ARLFASSEANGRNSNKVVLYED-AAKKQLQEFISALHGCELMDQACSSLGAILENTESRQ 796
AR+ N R + L + AA QLQ +S L L QA + G I
Sbjct: 352 ARI---GLRNARPRDLARLRDALAALPQLQTALSPLEAPHL--QALA--GNI-------- 396
Query: 797 LHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGV-DMDYDSACKKVKEIEAS 855
+ P + +L+ +N +I GGV YD+ ++ + +
Sbjct: 397 --------RTYPELAELLRR-------AIIDNPPAVIRDGGVLKQGYDAELDELLSLSEN 441
Query: 856 LTKHL------KEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFR 909
+ L ++ R L + + Y I Y +E+P P DY R + KG R
Sbjct: 442 AGQFLMDLEAREKARTGLPNLKVGYNRIHG--YYIELPRVQAEQAPADYIRRQTLKGAER 499
Query: 910 YWTPNIK----KLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALI 965
+ TP +K K L S+A + +++ + +L+ LI Q ++ A AELD L
Sbjct: 500 FITPELKAFEDKALSAKSRALAREKALYEELLEILIAQLA----PLQETATALAELDVLA 555
Query: 966 SLA---IASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIG 1022
+LA + DF RP + EEP + + HPV+ + + FV ND+ +
Sbjct: 556 NLAERALNLDF-----NRPRFV-----EEPCLRIRQGRHPVV--EQVLDTPFVANDLEL- 602
Query: 1023 GHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDH 1082
N +++TGPNMGGKST +RQ L V+LA +G+ VPA+ E+S VDRIF R+G+ D
Sbjct: 603 -DDNTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAQSCELSLVDRIFTRIGSSDD 661
Query: 1083 IMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQF 1142
+ G+STF+ E+SETA +L +A+ SLV++DE+GRGTST DG ++A ++ + LAG +
Sbjct: 662 LAGGRSTFMVEMSETANILHNASERSLVLMDEVGRGTSTFDGLSLAWAAA--EHLAGLRA 719
Query: 1143 LSTLFIKCNAVDCFQLTITA 1162
TLF A F+LT+ A
Sbjct: 720 W-TLF----ATHYFELTVLA 734
>sp|Q8KCC0|MUTS_CHLTE DNA mismatch repair protein MutS OS=Chlorobium tepidum (strain ATCC
49652 / DSM 12025 / TLS) GN=mutS PE=3 SV=1
Length = 878
Score = 241 bits (616), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 237/809 (29%), Positives = 362/809 (44%), Gaps = 113/809 (13%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMK------GEQPHCGFPER 385
+Q+ E K ++ ++ F++G FYE F DA + L++ + GE P GFP
Sbjct: 17 RQYLEVKERYPGYLLLFRVGDFYETFLDDAVTVSSALNIVLTRRSNGGAGEIPLAGFPHH 76
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ KL KG++V V +Q E P KG +VKREI +VT G ++
Sbjct: 77 ASEGYIAKLVTKGFKVAVCDQVEDPAL------AKG----IVKREITDIVTPGITYSDKI 126
Query: 446 LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLS 505
L + +YL A+ +P + + G+ VDV T+ M +L L L
Sbjct: 127 LDDRHN-NYLCAV-----APVKRGREHMAGVAFVDVTTAEF----RMTELPLGELKDFLQ 176
Query: 506 ELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAE 565
LRP EI L +R+ + + + S F A T L+ A
Sbjct: 177 SLRPSEI---------------LISSRDKELRESLAKSLFSGALFTTLDEWMFTEEQAAR 221
Query: 566 SLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLL 625
L +++ +G G+ G + I+ G + A G+L YL +
Sbjct: 222 VL---ENHFKTHSLKGFGI---EGYEAGRIAAGVILQYLEEAKQGSLKYLVR-------- 267
Query: 626 RFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGK 685
G + M LD NLE+ + + G +G+L ++ G
Sbjct: 268 ------------IGLVESGETMTLDIQTCRNLEIISSMQDGSLNGSLLEVIDRTKNPMGA 315
Query: 686 RLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALE-FRKALSRLPDMERLLARLFASS 744
RLLR WL PL + R DAV L ++ P E R L + D+ER LAR+ S
Sbjct: 316 RLLRRWLLHPLRKLEPVVRRHDAVGEL--LDAPEMREGIRGMLGGIIDLERALARIATSR 373
Query: 745 EANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPG 804
A +++++ S+L L ++LE ++S +L +
Sbjct: 374 ---------------AMPREVRQLGSSL-------AMIPQLKSLLEGSKSLRLRELALRL 411
Query: 805 KGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKE-Q 863
LP + ++ DA SG + G + Y + +++ I + L E Q
Sbjct: 412 DPLPELAETIEKALDA------EASGTLRDGGYIRAGYHAELDELRAISSGARDRLLEIQ 465
Query: 864 RKLLGDTSITYVTIGKDL---YLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLG 920
++ TSI+ + + + Y +EV + VP YE + + RY P +K+
Sbjct: 466 QQERQRTSISTLKVQYNKVFGYYIEVSRANSDKVPEYYEKKQTLVNAERYTIPALKEYEE 525
Query: 921 ELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCR 980
++ AE + + + Q L E + AA AELD L A +D E CR
Sbjct: 526 KILTAEEKSQLLEHQLFQELCAMIAEQAASIQTTAAALAELDCLACFASCAD--EFGYCR 583
Query: 981 PVILDSCSNEEPYISAKSLGHPVLRSDSLGKGE-FVPNDITIGGHGNASFILLTGPNMGG 1039
PV+ NE +S ++ HPVL LG E +V ND +G +++TGPNM G
Sbjct: 584 PVM-----NEGTELSIRAGRHPVLER-ILGADEPYVANDCQVGS--EQQLLIITGPNMAG 635
Query: 1040 KSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETAL 1099
KS+ LRQV L V+LAQVG VPAE EI VDRIF R+GA D++ +G+STFL E++E A
Sbjct: 636 KSSYLRQVGLVVLLAQVGCFVPAESAEIGLVDRIFTRVGASDNLTSGESTFLVEMNEAAS 695
Query: 1100 MLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
+L++AT SL++LDE+GRGTST DG +IA
Sbjct: 696 ILNNATERSLLLLDEIGRGTSTFDGMSIA 724
>sp|Q2JT35|MUTS_SYNJA DNA mismatch repair protein MutS OS=Synechococcus sp. (strain
JA-3-3Ab) GN=mutS PE=3 SV=1
Length = 882
Score = 241 bits (616), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 247/830 (29%), Positives = 373/830 (44%), Gaps = 128/830 (15%)
Query: 327 LSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMK------GEQPHC 380
L+ + + E K ++ ++ +++G FYE+F DA + ++EL+L G P C
Sbjct: 6 LTPMMQHYVELKRQYPHAILLYRLGDFYEMFFQDAQLVSRELELVLTGREAGAIGRVPMC 65
Query: 381 GFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTL 440
G P F +L KGY + V +Q E +Q KG +V+RE+ V+T GT+
Sbjct: 66 GIPYHAFDRYAAQLVAKGYALAVCDQMEPADQ------AKG----LVRREVTRVITPGTV 115
Query: 441 TEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSR--IILGQVMDDLDCS 498
E ELL A + +YL A+ S + +G+ D++T + G+ + L+
Sbjct: 116 IEEELLQARQN-NYLAAIVRLRGSKQT-----VWGLAYADISTGEFWVCQGEGQEQLEQE 169
Query: 499 VLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNI 558
L+ L+P EI+ P TE + P + PL L +
Sbjct: 170 -----LARLQPAEILLP-------TEEGLGLGLMRP-GDPQAPLG---------LPGQYT 207
Query: 559 YNRITAE--SLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLK 616
Y AE L A N+ + GL L G+ E + + A GG L YL+
Sbjct: 208 YTLRPAEPFELATARENLLQTY----GLRSLEGLGCEGLPLA------IRAAGGLLHYLE 257
Query: 617 KSFLDETLLRFAKFELLPCSGFGDMAKKP--------YMVLDAPALENLEVFENSRSGDS 668
++ K + P G +P Y++LD NLE+ + R G
Sbjct: 258 ET---------QKNLVQPSPQGGHPLLRPPRTYQLTDYLILDTQTRRNLELTQTIREGAF 308
Query: 669 SGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQP-FALEFRKAL 727
G+L L+ TA G R LR WL +PL + IR RQD + L + P L
Sbjct: 309 VGSLLWVLDRSRTAMGGRTLRRWLLQPLRDPEQIRLRQDTIQEL--LESPSLRTRLGSLL 366
Query: 728 SRLPDMERLLARLFASSEANGRNSNKVVLYEDAAK-KQLQEFISA-----LHGCELMDQA 781
L D+ERL R+ AS AN R V L K QL E ++ L + +D A
Sbjct: 367 DSLYDLERLANRV-ASGTANPREL--VALGSSLGKLPQLAELVAEAQTPLLQSLQQVDPA 423
Query: 782 CSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMD 841
LG +E H L P P +++ G I P GVD +
Sbjct: 424 LVDLGHRIE--------HTLLPSP--PPVLT---------------EGGLIRP--GVDAE 456
Query: 842 YDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDL---YLLEVPESLRGSVPRDY 898
D ++V++ + + K +R+ T I + +G + Y L + + VP++Y
Sbjct: 457 LDRLRQQVEQDRHWIAQLEKTERE---RTGIPTLKVGFNKAFGYYLSISRAKAQQVPKEY 513
Query: 899 ELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAAT 958
+ + R+ TP +K+ + A++E + +L + RQ+
Sbjct: 514 IRKQTLTNEERFITPELKEKEARILTAQTEINQREYELFVQLRQEAGSQAAAIRQVAQTL 573
Query: 959 AELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPND 1018
A +DAL LA + +G T RPVI ++ I HPV+ SL +G FVPN
Sbjct: 574 AAVDALFGLAEVA-VQQGYT-RPVI---TADRRLIIEEGR--HPVV-EKSLPQGLFVPNS 625
Query: 1019 ITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMG 1078
+ +G I+LTGPNM GKST LRQ+ L ILAQ+G+ VPA E+ DR+F R+G
Sbjct: 626 VRLGSPHGPDLIVLTGPNMSGKSTYLRQIGLIQILAQMGSFVPARRAELGLCDRVFTRIG 685
Query: 1079 AKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
A D + GQSTF+ E++ETA +L+ A SLV+LDE+GRGT+T DG +IA
Sbjct: 686 AVDDLATGQSTFMVEMNETANILNHAGERSLVLLDEIGRGTATFDGLSIA 735
>sp|Q2JIA6|MUTS_SYNJB DNA mismatch repair protein MutS OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=mutS PE=3 SV=1
Length = 884
Score = 241 bits (614), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 250/830 (30%), Positives = 373/830 (44%), Gaps = 118/830 (14%)
Query: 327 LSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMK------GEQPHC 380
L+ + + E K ++ ++ +++G FYE+F DA ++EL+L G P C
Sbjct: 6 LTPMMQHYVELKRQYPHAILLYRLGDFYEMFFQDAQRVSRELELVLTGREAGAIGRVPMC 65
Query: 381 GFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTL 440
G P F +L KGY + V +Q E +Q KG +V+RE+ V+T GT+
Sbjct: 66 GIPYHAFDRYAAQLVAKGYALAVCDQMEPADQ------AKG----LVRREVTRVITPGTV 115
Query: 441 TEGELLSANPDASYLMA---LTESNQSPASQSTDRCFGICVVDVATSRIILGQV--MDDL 495
E ELL A + +YL A L S Q+P +G+ D++T + Q + L
Sbjct: 116 LEEELLQARQN-NYLAAVVRLKGSKQAPCR------WGLAYADISTGEFWVCQSEGQEQL 168
Query: 496 DCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEI 555
+ L+ L+P E++ P TE + P + PL L
Sbjct: 169 EQE-----LARLQPAEVLLP-------TEEGLGLGLIRP-GDPQKPLG---------LPN 206
Query: 556 KNIYNRITAE--SLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLF 613
+ Y AE L A N+ + GL L G+ E + + A GG L
Sbjct: 207 QYAYTLRPAEPFELAVARENLMQTY----GLRSLEGLGCEGLPLA------VRAAGGLLH 256
Query: 614 YLKKSFLDETLLRFAKFELLPCSGFGDMAKKP--------YMVLDAPALENLEVFENSRS 665
YL+++ + + K L P G P Y++LDA NLE+ + R
Sbjct: 257 YLEETHSPQRCV-APKTLLQPSPQGGHPLLPPPRTYQLTDYLILDAQTRRNLELTQTIRE 315
Query: 666 GDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRK 725
G G+L L+H TA G R LR WL +PL +S IR RQD + L N
Sbjct: 316 GAFVGSLLWVLDHSRTAMGGRTLRRWLLQPLRDSEQIRLRQDTIQELLE-NPSLRARLGS 374
Query: 726 ALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAK-KQLQEFISA-----LHGCELMD 779
L L D+ERL R+ S AN R V L K QL E + L + +D
Sbjct: 375 LLDSLYDLERLANRV-GSGTANPREL--VALGSSLGKLPQLAELVGEAKTPLLQSLQQVD 431
Query: 780 QACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVD 839
A LG R++ H L P P I++ G I P GVD
Sbjct: 432 PALVDLG--------RRIEHTLLPSP--PPILT---------------EGGLIRP--GVD 464
Query: 840 MDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDL-YLLEVPESLRGSVPRDY 898
+ D ++V++ + + K +R G ++ V K Y L + + VP++Y
Sbjct: 465 PELDRLRQQVEQDRQWVAQLEKSERDRTGIPTLK-VGFNKAFGYYLSISRAKAHQVPKEY 523
Query: 899 ELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAAT 958
+ + R+ TP +K+ + A+++ + +L + RQ+
Sbjct: 524 IRKQTLTNEERFITPELKEKEARILTAQTDINQREYELFVQLRQEAGSRAEAIRQVAQTL 583
Query: 959 AELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPND 1018
A +DAL LA + +G T RP++ ++ I HPV+ SL +G FVPN
Sbjct: 584 AAVDALFGLAEVA-VQQGYT-RPLL---TTDRRLIIEEGR--HPVV-EKSLPQGLFVPNS 635
Query: 1019 ITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMG 1078
+ +G I+LTGPNM GKST LRQ+ L ILAQ+G+ VPA E+ DR+F R+G
Sbjct: 636 VQLGSPHGPDLIVLTGPNMSGKSTYLRQIGLIQILAQMGSFVPARRAELGLCDRVFTRIG 695
Query: 1079 AKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
A D + GQSTF+ E++ETA +L+ A SLV+LDE+GRGT+T DG +IA
Sbjct: 696 AVDDLATGQSTFMVEMNETANILNHAGERSLVLLDEIGRGTATFDGLSIA 745
>sp|Q48F92|MUTS_PSE14 DNA mismatch repair protein MutS OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=mutS PE=3 SV=1
Length = 859
Score = 240 bits (612), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 230/822 (27%), Positives = 368/822 (44%), Gaps = 151/822 (18%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQ------PHCGFPER 385
+Q+W+ K++H+D+++F++MG FYE+F DA AK LD+ Q P CG P
Sbjct: 16 QQYWKLKNQHLDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQSIPMCGIPYH 75
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ KL + G V++ EQ P KG D R++ ++T GT+++ L
Sbjct: 76 AAEGYLAKLVKLGESVVICEQIGDPA------TSKGPVD----RQVVRIITPGTISDEAL 125
Query: 446 LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLS 505
L D N A +R FG+ V+D+ + V++ L L
Sbjct: 126 LDERRD----------NLIAAVLGDERLFGLAVLDITSGNF---SVLEIKGWENLLAELE 172
Query: 506 ELRPVEIIKPANM---LSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRI 562
+ PVE++ P + L E R R R P WD E K++ +
Sbjct: 173 RINPVELLIPDDWPQGLPAEKRRGARR--RAP-----------WDFERDSAH-KSLCQQF 218
Query: 563 TAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDE 622
+ + L G C ++ + + A G L Y K++
Sbjct: 219 STQDLK--------------GFGC------------ENLTLAIGAAGCLLSYAKETQRTA 252
Query: 623 T-LLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVT 681
LR + E L + ++LDA + NLE+ + + SG TL + ++ C T
Sbjct: 253 LPHLRSLRHERLDDT----------VILDAASRRNLEL-DTNLSGGRDNTLQSVMDRCQT 301
Query: 682 AFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALE-FRKALSRLPDMERLLARL 740
A G RLL WL RPL + +++ RQ ++ + + E + L + D+ER+LAR
Sbjct: 302 AMGTRLLTRWLNRPLRDLTILQARQTSITCFL---ERYRFENLQPQLKEIGDIERILAR- 357
Query: 741 FASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHI 800
+ +A + L AL + QA + L E+ L +
Sbjct: 358 --------------IGLRNARPRDLARLRDALSALPELQQAMTDL-------EAPHLQQL 396
Query: 801 LTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGV-DMDYDSACKKVKEIEASLTKH 859
P + +L+ +N +I GGV YD+ ++ + + +
Sbjct: 397 AQTASTYPELADLLQR-------AIIDNPPAVIRDGGVLKTGYDAELDDLQSLSENAGQF 449
Query: 860 L------KEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTP 913
L ++ R L + + Y + Y +E+P P DY R + KG R+ TP
Sbjct: 450 LIDLEAREKARTGLANLKVGYNRVHG--YFIELPSKQAEQAPADYIRRQTLKGAERFITP 507
Query: 914 NIK----KLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAI 969
+K K L S+A + ++ +++L+ LIG H + AA AELD L +LA
Sbjct: 508 ELKEFEDKALSAKSRALAREKMLYEALLEDLIG----HLAPLQDTAAALAELDVLSNLA- 562
Query: 970 ASDFYEGPTCRPVILD-SCSN--EEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGN 1026
R + LD +C EP + + HPV+ + + FV ND+ + +
Sbjct: 563 ---------ERALNLDLNCPRFVAEPCMRIEQGRHPVV--EQVLSTPFVANDLALDD--S 609
Query: 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAG 1086
+++TGPNMGGKST +RQ L V+LA +G+ VPA E+S VDRIF R+G+ D + G
Sbjct: 610 TRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCELSLVDRIFTRIGSSDDLAGG 669
Query: 1087 QSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
+STF+ E+SETA +L +AT SLV++DE+GRGTST DG ++A
Sbjct: 670 RSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFDGLSLA 711
>sp|Q3KH79|MUTS_PSEPF DNA mismatch repair protein MutS OS=Pseudomonas fluorescens (strain
Pf0-1) GN=mutS PE=3 SV=1
Length = 860
Score = 240 bits (612), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 235/821 (28%), Positives = 374/821 (45%), Gaps = 149/821 (18%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQ------PHCGFPER 385
+Q+W K++H D+++F++MG FYE+F DA AK LD+ Q P CG P
Sbjct: 16 QQYWRLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQAIPMCGIPYH 75
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ KL + G V++ EQ P KG V+R++ ++T GT+++ L
Sbjct: 76 AAEGYLAKLVKLGESVVICEQVGDPA------TSKGP----VERQVVRIITPGTVSDEAL 125
Query: 446 LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLS 505
L D N A +R FG+ V+D+ + V++ L L
Sbjct: 126 LDERRD----------NLIAAVLGDERLFGLAVLDITSGNFT---VLEIKGWENLLAELE 172
Query: 506 ELRPVEIIKPANM---LSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRI 562
+ PVE++ P + L E R + R R P WD E +K++ +
Sbjct: 173 RVNPVELLIPDDWPKDLPAEKRRGVRR--RAP-----------WDFERDS-ALKSLCQQF 218
Query: 563 TAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDE 622
+ + L G C ++ + + A G L Y K++
Sbjct: 219 STQDLK--------------GFGC------------ETLTLAIGAAGCLLAYAKETQRTA 252
Query: 623 T-LLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVT 681
LR + E L + +VLD + NLE + + +G TL + ++ C T
Sbjct: 253 LPHLRSLRHERLDDT----------VVLDGASRRNLE-LDTNLAGGRDNTLQSVVDRCQT 301
Query: 682 AFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLF 741
A G RLL WL RPL + ++ RQ ++ L +++ + L + D+ER+LAR+
Sbjct: 302 AMGSRLLTRWLNRPLRDLTVLLARQTSITCL--LDRYRFENLQPQLKEIGDIERILARI- 358
Query: 742 ASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHIL 801
RN+ D A+ L++ + AL L + + E+ L +
Sbjct: 359 -----GLRNARP----RDLAR--LRDALGAL----------PELQVAMTDLEAPHLQRLA 397
Query: 802 TPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGV-DMDYDSACKKVKEIEASLTKHL 860
T P + ++L+ K D N +I GGV YDS +++ + + + L
Sbjct: 398 TTTSTYPELAALLE--KAIID-----NPPAVIRDGGVLKTGYDSELDELQSLSENAGQFL 450
Query: 861 ------KEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPN 914
++ R L + + Y I Y +E+P S P DY R + KG R+ TP
Sbjct: 451 IDLEAREKARTGLANLKVGYNRIHG--YFIELPSKQAESAPADYIRRQTLKGAERFITPE 508
Query: 915 IK----KLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIA 970
+K K L S+A + ++ +++L+ LI Q + A AELD L +LA
Sbjct: 509 LKEFEDKALSAKSRALAREKMLYEALLEDLISQL----PPLQDTAGALAELDVLSNLA-- 562
Query: 971 SDFYEGPTCRPVILD-SCSN--EEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNA 1027
R + LD +C EP + HPV+ + + FV ND+++ N
Sbjct: 563 --------ERALNLDLNCPTFVSEPCMRISQGRHPVV--EQVLTTPFVANDLSL--DDNT 610
Query: 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQ 1087
+++TGPNMGGKST +RQ L V+LA +G+ VPA E+S VDRIF R+G+ D + G+
Sbjct: 611 RMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCELSLVDRIFTRIGSSDDLAGGR 670
Query: 1088 STFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
STF+ E+SETA +L +AT SLV++DE+GRGTST DG ++A
Sbjct: 671 STFMVEMSETANILHNATERSLVLMDEVGRGTSTFDGLSLA 711
>sp|A9KL10|MUTS_CLOPH DNA mismatch repair protein MutS OS=Clostridium phytofermentans
(strain ATCC 700394 / DSM 18823 / ISDg) GN=mutS PE=3 SV=1
Length = 932
Score = 239 bits (611), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 234/825 (28%), Positives = 363/825 (44%), Gaps = 131/825 (15%)
Query: 324 LRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQ------ 377
+ L+ +Q+ E K ++ D ++F+++G FYE+F DA V +KEL++ + G+
Sbjct: 1 MAQLTPMMQQYVETKEQYKDCILFYRLGDFYEMFFEDALVASKELEIT-LTGKNCGQEER 59
Query: 378 -PHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVT 436
P CG P + KL KGY+V + EQ E P + KG +VKRE+ +VT
Sbjct: 60 APMCGIPYHAAEGYISKLIGKGYKVAICEQVEDP------KLAKG----IVKREVIRIVT 109
Query: 437 KGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLD 496
GT + L + +YLM + TD GI VD+ T + +V
Sbjct: 110 PGTNLNTQTLDETRN-NYLMGII---------FTDEHCGISTVDITTGDYYVTEV----- 154
Query: 497 CSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIK 556
E R IL +++V EF+ V ++K
Sbjct: 155 -------------------------ENNRKILDEIYKYTPSEIVCNPEFFHCGLDVEDLK 189
Query: 557 NIYNRI--TAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFY 614
N Y T E + E + L G+ + S G ++A G L Y
Sbjct: 190 NRYQIAVSTFEDWYYDSEQSVKTLKEHFKVGSLDGLGLKDYSVG------VNAAGAILKY 243
Query: 615 LKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYA 674
L + K L + YMV+D+ + NLE+ E R G+L
Sbjct: 244 LYNT---------QKNSLSHLTHITPYVTSRYMVIDSSSRRNLELTETLREKQKRGSLLW 294
Query: 675 QLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDME 734
L+ TA G R+LR+++ +PL I R DA++ L N E R+ L+ + D+E
Sbjct: 295 VLDKTKTAMGARMLRSFVEQPLITMDEISARYDAISELND-NVITREEIREYLNYIYDLE 353
Query: 735 RLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCE--LMDQACSSLGAI--LE 790
RL+ ++ S AN R+ ++ ++ L L CE L+ Q + A+ L+
Sbjct: 354 RLMGKISYKS-ANPRD----LIAFASSLSMLPHIKYLLSTCESALLKQIHEEMDALDDLQ 408
Query: 791 NTESRQLHHILTPGKGLPAIVSILKHFKDAFDWV-EANNSGRIIPHGGVDMDYDSACKKV 849
N R + P G+ I + F D + +A G++ A +
Sbjct: 409 NLIDRSIAE--EPPIGIKEGGIIKEGFHTEVDTLRKAKTEGKVWL----------AELEA 456
Query: 850 KEIEASLTKHLK-EQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFF 908
KE E + K+LK + ++ G Y LEV S VP ++ + +
Sbjct: 457 KEKEQTGIKNLKVKYNRVFG-------------YYLEVTNSYANLVPENWIRKQTLSNAE 503
Query: 909 RYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLA 968
RY TP +K+L ++ AE S + + Q E + ++ A A +DA SLA
Sbjct: 504 RYTTPELKELEDKILNAEDRLFSLEYDLFAEIRDQIAEEVKRIQKTAKAVANIDAFASLA 563
Query: 969 IASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGG----- 1023
++ RP + N I K HPV+ + +PND+ +
Sbjct: 564 YVAE--RNQFIRPEL-----NTNGTIDIKEGRHPVVE-------QMIPNDMFVSNDTYLD 609
Query: 1024 HGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHI 1083
+ ++TGPNM GKST +RQ L V++AQVG+ VPA I VDRIF R+GA D +
Sbjct: 610 NAEKRISIITGPNMAGKSTYMRQTALIVLMAQVGSFVPASYANIGIVDRIFTRVGASDDL 669
Query: 1084 MAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
+GQSTF+ E++E A +L +AT+NSL++LDE+GRGTST DG +IA
Sbjct: 670 ASGQSTFMVEMTEVANILRNATKNSLLILDEIGRGTSTFDGLSIA 714
>sp|Q4ZWP5|MUTS_PSEU2 DNA mismatch repair protein MutS OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=mutS PE=3 SV=1
Length = 859
Score = 239 bits (610), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 233/821 (28%), Positives = 366/821 (44%), Gaps = 149/821 (18%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQ------PHCGFPER 385
+Q+W+ K++H+D+++F++MG FYE+F DA AK LD+ Q P CG P
Sbjct: 16 QQYWKLKNQHLDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQSIPMCGIPYH 75
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ KL + G V++ EQ P KG D R++ ++T GT+++ L
Sbjct: 76 AAEGYLAKLVKLGESVVICEQIGDPA------TSKGPVD----RQVVRIITPGTISDEAL 125
Query: 446 LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLS 505
L D N A +R FG+ V+D+ + V++ L L
Sbjct: 126 LDERRD----------NLIAAVLGDERLFGLAVLDITSGNF---SVLEIKGWENLLAELE 172
Query: 506 ELRPVEIIKPANM---LSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRI 562
+ PVE++ P + L E R R R P WD E K++ +
Sbjct: 173 RINPVELLIPDDWPPGLPAEKRRGSRR--RAP-----------WDFERDSAH-KSLCQQF 218
Query: 563 TAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDE 622
+ L + LT G L+S + +AL L L+ LD+
Sbjct: 219 ATQDLKGFGC---------ENLTLAIGAAGCLLSYAKETQR--TAL-PHLRSLRHERLDD 266
Query: 623 TLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTA 682
T++ LDA + NLE+ + + SG TL + ++ C TA
Sbjct: 267 TVI-----------------------LDAASRRNLEL-DTNLSGGRDNTLQSVMDRCQTA 302
Query: 683 FGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALE-FRKALSRLPDMERLLARLF 741
G RLL WL RPL + +++ RQ ++ + + E + L + D+ER+LAR
Sbjct: 303 MGTRLLTRWLNRPLRDLTILQARQTSITCFL---ERYRFENLQPQLKEIGDIERILAR-- 357
Query: 742 ASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHIL 801
+ +A + L AL + QA S L A L +
Sbjct: 358 -------------IGLRNARPRDLARLRDALSALPELQQAMSDLDA-------PHLQQLA 397
Query: 802 TPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGV-DMDYDSACKKVKEIEASLTKHL 860
P + +L+ +N +I GGV YD+ ++ + + + L
Sbjct: 398 QTAGTYPELADLLQR-------AIIDNPPAVIRDGGVLKTGYDAELDDLQSLSENAGQFL 450
Query: 861 ------KEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPN 914
++ R LG+ + Y + Y +E+P P DY R + KG R+ TP
Sbjct: 451 IDLEAREKARTGLGNLKVGYNRVHG--YFIELPSKQAEQAPADYIRRQTLKGAERFITPE 508
Query: 915 IK----KLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIA 970
+K K L S+A + ++ +++L+ LIG H + AA AELD L +LA
Sbjct: 509 LKEFEDKALSAKSRALAREKMLYETLLEDLIG----HLAPLQDTAAALAELDVLSNLA-- 562
Query: 971 SDFYEGPTCRPVILD-SCSN--EEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNA 1027
R + LD +C EP + + HPV+ + + FV ND+ + +
Sbjct: 563 --------ERALNLDLNCPRFVAEPCMRIEQGRHPVV--EQVLSTPFVANDLAL--DDST 610
Query: 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQ 1087
+++TGPNMGGKST +RQ L V+LA +G+ VPA E+S VDRIF R+G+ D + G+
Sbjct: 611 RMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCELSLVDRIFTRIGSSDDLAGGR 670
Query: 1088 STFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
STF+ E+SETA +L +AT SLV++DE+GRGTST DG ++A
Sbjct: 671 STFMVEMSETANILHNATDKSLVLMDEVGRGTSTFDGLSLA 711
>sp|Q83CQ2|MUTS_COXBU DNA mismatch repair protein MutS OS=Coxiella burnetii (strain RSA 493
/ Nine Mile phase I) GN=mutS PE=3 SV=1
Length = 859
Score = 239 bits (609), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 228/847 (26%), Positives = 383/847 (45%), Gaps = 140/847 (16%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQ------PHCGFPER 385
+Q+ K+++ D ++F++MG FYELF DA AK L++ Q P G P
Sbjct: 22 RQYLRIKAEYPDLLVFYRMGDFYELFYDDAKKAAKLLNITLTARGQSAGHAIPMAGVPYH 81
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ KL R G V++ EQ P KG V RE+ ++T GT+++ L
Sbjct: 82 AVENYLTKLVRLGESVVICEQIGDPA------TSKGP----VAREVTRIITPGTVSDEAL 131
Query: 446 LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLS 505
L + D + ++ Q DR FGI +D+ + R ++ +++ + L +
Sbjct: 132 LDEHRDNTLMVI---------HQEKDR-FGIATLDITSGRFLIQEIISE------NALFA 175
Query: 506 ELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAE 565
E +E I+PA +L E ++ +PL D + W+ ++ TA
Sbjct: 176 E---IERIRPAELLISE------ENSVHPLKADSIKRRPPWE-----------FDHATAL 215
Query: 566 SLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLL 625
+L +G G+T LP ++A G L Y+ +
Sbjct: 216 TL--LCQQFQTKSLDGFGITHLP--------------LAITAAGCLLQYVNYT------- 252
Query: 626 RFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGK 685
K L + + +DA NLE+ N + G+ +L L+H T G
Sbjct: 253 --QKSALPHIHSIQAEQNEEALFIDANTRRNLELITNLQ-GEEVHSLAWLLDHTATPMGS 309
Query: 686 RLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSE 745
RLLR W+ RPL + L+++RQ+AV+ L + + E + L + D+ER++AR+ S
Sbjct: 310 RLLRRWINRPLRDQILLQQRQNAVSTL--LEKRNYSEIYENLRHIGDLERIVARIALRS- 366
Query: 746 ANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGK 805
A + L + AL + Q ++L ++QL I
Sbjct: 367 --------------ARPRDLMQLRQALGVLPTLHQQLTNLPL------NKQLQEI---KN 403
Query: 806 GLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMD-YDSACKKVKEIEASLTKHL---- 860
L + + K A N +I GGV D YD+ +++ + + + L
Sbjct: 404 NLGLFDELFRLLKKAI----IENPPIVIRDGGVIADGYDAPLDELRNMSTNSHQFLIDLE 459
Query: 861 KEQRKLLGDTSITYVTIGKDL---YLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKK 917
+++R+ T I V +G + Y +E+ + P +Y R + K RY TP +K
Sbjct: 460 QQERE---RTKINTVKVGYNRIHGYYIEISRAQAKQAPTEYIRRQTLKNVERYITPELKI 516
Query: 918 LLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDF--YE 975
++ + S + K + ++L+ E +Q +A A LD L +LA +D +
Sbjct: 517 FEDKVLSSRSRALAREKELYEQLLDTLIEKLIPLQQCASAIANLDVLNTLAERADTLNFN 576
Query: 976 GPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGP 1035
P C + P I ++ HP++ +++ F+PND + +++TGP
Sbjct: 577 APQF-------C--DYPIIKIEAGRHPIV--ENVMTDPFMPNDTHLDE--KRRMLIITGP 623
Query: 1036 NMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELS 1095
NMGGKST +RQ L +LA +G+ VPA+ ++ P+DRIF R+GA D + +G+STF+ E++
Sbjct: 624 NMGGKSTYMRQTALITLLAYIGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMT 683
Query: 1096 ETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDC 1155
ETA +L +AT SLV++DE+GRGTST DG ++A + + + F LF A
Sbjct: 684 ETAAILHNATEESLVLMDEVGRGTSTFDGLSLAYACASYLATKLKAF--ALF----ATHY 737
Query: 1156 FQLTITA 1162
F+LT A
Sbjct: 738 FELTALA 744
>sp|C3KCT2|MUTS_PSEFS DNA mismatch repair protein MutS OS=Pseudomonas fluorescens (strain
SBW25) GN=mutS PE=3 SV=1
Length = 863
Score = 239 bits (609), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 231/820 (28%), Positives = 365/820 (44%), Gaps = 147/820 (17%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQ------PHCGFPER 385
+Q+W K++H D+++F++MG FYE+F DA AK LD+ Q P CG P
Sbjct: 16 QQYWRLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQSIPMCGIPYH 75
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ + KL + G V++ EQ P KG V+R++ ++T GT+++ L
Sbjct: 76 SLEGYLVKLVKLGESVVICEQIGDPA------TSKGP----VERQVVRIITPGTVSDEAL 125
Query: 446 LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLS 505
L D N A +R FG+ V+D+ + V++ L L
Sbjct: 126 LDERRD----------NLIAAVLGDERLFGLSVLDITSGNF---SVLEIKGWENLLAELE 172
Query: 506 ELRPVEIIKPANM---LSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRI 562
+ PVE++ P + L E R R R P WD E +K++ +
Sbjct: 173 RINPVELLIPDDWPKDLPAEKRRGTKR--RAP-----------WDFERDS-ALKSLCQQF 218
Query: 563 TAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDE 622
+ + L G CL G E T L L+ LD+
Sbjct: 219 SVQDLKGFGCETLTLAIGAAG--CLLGYAKETQRTALPH----------LRSLRHERLDD 266
Query: 623 TLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTA 682
T +VLD + NLE + + +G TL + ++ C TA
Sbjct: 267 T-----------------------VVLDGASRRNLE-LDTNLAGGRDNTLQSVVDRCQTA 302
Query: 683 FGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFA 742
G RLL WL RPL + +++ RQ ++ L ++ + + L + D+ER+LAR
Sbjct: 303 MGSRLLTRWLNRPLRDLTVLQARQTSITCL--LDGYRFEKLQPQLKEIGDIERILAR--- 357
Query: 743 SSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILT 802
+ +A + L AL + A + L ++ L +
Sbjct: 358 ------------IGLRNARPRDLARLRDALGALPQLQVAMTEL-------DTPHLQQLAV 398
Query: 803 PGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGV-DMDYDSACKKVKEIEASLTKHL- 860
P + ++L+ K D N II GGV YDS +++ + + + L
Sbjct: 399 TAGTYPELAALLE--KAIID-----NPPAIIRDGGVLKTGYDSELDELQSLSENAGQFLI 451
Query: 861 -----KEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNI 915
++ R L + + Y + Y +E+P S P DY+ R + KG R+ TP +
Sbjct: 452 DLEAREKARTGLANLKVGYNRVHG--YFIELPSKQAESAPIDYQRRQTLKGAERFITPEL 509
Query: 916 K----KLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIAS 971
K K L S+A + ++ +++L+ LI Q + AA AELD L +LA
Sbjct: 510 KAFEDKALSAKSRALAREKMLYEALLEDLISQLA----PLQDTAAALAELDVLSNLA--- 562
Query: 972 DFYEGPTCRPVILD-SCSN--EEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNAS 1028
R + LD +C EP + HPV+ + + FV ND+++ +
Sbjct: 563 -------ERALNLDLNCPRFVSEPCMRIVQGRHPVV--EQVLTTPFVANDLSLDD--DTR 611
Query: 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQS 1088
+++TGPNMGGKST +RQ L V+LA +G+ VPA E+S VDRIF R+G+ D + G+S
Sbjct: 612 MLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCELSLVDRIFTRIGSSDDLAGGRS 671
Query: 1089 TFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
TF+ E+SETA +L +AT SLV++DE+GRGTST DG ++A
Sbjct: 672 TFMVEMSETANILHNATERSLVLMDEVGRGTSTFDGLSLA 711
>sp|B3QPY5|MUTS_CHLP8 DNA mismatch repair protein MutS OS=Chlorobaculum parvum (strain NCIB
8327) GN=mutS PE=3 SV=1
Length = 876
Score = 238 bits (606), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 239/812 (29%), Positives = 359/812 (44%), Gaps = 121/812 (14%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMK------GEQPHCGFPER 385
+Q+ E K ++ + V+ F++G FYE F DA + L++ K GE P GFP
Sbjct: 17 RQYLEVKERYPEYVLLFRVGDFYETFLDDAVTVSAALNIVLTKRSNGSAGEIPLAGFPHH 76
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ KL KG++V V +Q E P KG +VKREI +VT G ++
Sbjct: 77 ASEGYIAKLVTKGFKVAVCDQVEDPAL------AKG----IVKREITDIVTPGITYSDKI 126
Query: 446 LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLS 505
L + +YL A+ + + + G+ VDV T+ M +L + L L
Sbjct: 127 LDDRHN-NYLCAV-----ALFKRGREHLAGVAFVDVTTAEF----RMTELPVAELKDFLQ 176
Query: 506 ELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFW----DAETTVLEIKNIYNR 561
L P EI+ + S + E LR + +N L + + W + + VLE N
Sbjct: 177 SLHPSEIL----ISSRDKE---LRDSLAKSMNTLFTVLDEWMFSAEQASQVLE-----NH 224
Query: 562 ITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLD 621
SL +G G+ G+ I+ G + A G+L YL +
Sbjct: 225 FKTHSL------------KGFGI---DGVEGGRIAAGAILQYLEEAKQGSLKYLVR---- 265
Query: 622 ETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVT 681
G + M LD NLE+ + + G +G+L ++
Sbjct: 266 ----------------IGLVESAETMTLDIQTRRNLEIISSMQDGSLNGSLLEVIDRTKN 309
Query: 682 AFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLF 741
G RLLR WL PL + +R DAV L + E R+ L + D+ER LAR+
Sbjct: 310 PMGARLLRRWLLHPLRKLEAVVQRHDAVEELLE-SDSMREESRQLLGGIIDLERALARI- 367
Query: 742 ASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHIL 801
A+S A R L G L A+L + E+++L H+
Sbjct: 368 ATSRAMPREVR-------------------LLGSSF--ALIPQLKAMLASCEAQRLRHLA 406
Query: 802 TPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLK 861
LP + ++ D SG + G + Y +++ I + L
Sbjct: 407 DRLDSLPELAETIERALD------PEASGTLRDGGYIRAGYHEELDELRAISSGARDRLL 460
Query: 862 E-QRKLLGDTSITYVTIGKDL---YLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKK 917
E Q+ TSI+ + + + Y +EV + VP YE + + RY P +K+
Sbjct: 461 EIQQAERSKTSISTLKVQYNKVFGYYIEVSRANSDKVPEYYEKKQTLVNAERYTIPALKE 520
Query: 918 LLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGP 977
++ AE + + + Q L ++ AA AELD L A +D Y
Sbjct: 521 YEEKILTAEEKSQFLEHRLFQELCAAVAAEAASIQKTAAALAELDCLACFASCADEYR-- 578
Query: 978 TCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGE-FVPNDITIGGHGNASFILLTGPN 1036
CRP + NE +S HPVL LG E +V ND +G + +++TGPN
Sbjct: 579 YCRPAM-----NEGTELSITGGRHPVLER-ILGADEPYVANDCRVG--SDQQLLIITGPN 630
Query: 1037 MGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSE 1096
M GKS+ LRQ L V+LAQVG+ VPAE EI VDRIF R+GA D++ +G+STFL E++E
Sbjct: 631 MAGKSSYLRQAGLVVLLAQVGSFVPAESAEIGLVDRIFTRVGASDNLTSGESTFLVEMNE 690
Query: 1097 TALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
A +L++AT SL++LDE+GRGTST DG +IA
Sbjct: 691 AASILNNATERSLLLLDEIGRGTSTFDGMSIA 722
>sp|B9LB04|MUTS_CHLSY DNA mismatch repair protein MutS OS=Chloroflexus aurantiacus (strain
ATCC 29364 / DSM 637 / Y-400-fl) GN=mutS PE=3 SV=1
Length = 966
Score = 238 bits (606), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 241/858 (28%), Positives = 371/858 (43%), Gaps = 126/858 (14%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGE--------------- 376
+Q+ + K + D ++ F+ G FYE F+ DA + A+ LD+ + E
Sbjct: 11 RQYRKLKEEAADAILLFRFGDFYETFDDDAKLIAELLDITLTRKEYAVDKRLPKDQQKLY 70
Query: 377 QPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKG----------SKDKV 426
P G P V +L +GYRV + EQ E + + + S K+
Sbjct: 71 APMAGMPYHAVDRYVSELIARGYRVAIAEQLSETEAMRNDTRPRSVYAAGLTPVESSGKM 130
Query: 427 VKREICAVVTKGTLTEGELLSANPDAS--YLMALTESNQSPASQSTDRCFGICVVDVATS 484
V+R I V+T GT+ + +L PD + YL A+ G+ D++T
Sbjct: 131 VQRAIVRVITPGTVIDPAML---PDRTNNYLAAVIVEQGK---------VGLAYADLSTG 178
Query: 485 RIILGQVMDDLDCSVLCCLLSELRPVEIIKPAN--MLSPETERAILRHTRNPLVNDLVPL 542
+ D L L+ L P E++ P + + P E R L DL PL
Sbjct: 179 EFAAAEFTDARALMQLQAELARLSPAEVLVPDDEALRLPNLEPVQAR-----LSQDLAPL 233
Query: 543 SEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQ-------AEGDGLTCLPGILSELI 595
++ + +L + + R+ S A + C L L
Sbjct: 234 TK--EEREALLPHERVARRLEGASAASWTQGYVTEWPLWRWELATTTEVLCEHLALPSLA 291
Query: 596 STGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALE 655
G G + + G L + + R ++ L G YM+LD
Sbjct: 292 VCGLDGRPLATRAAGALLQYAQVTQRQ---RVSQLRALRVYHTG-----AYMLLDPQTRR 343
Query: 656 NLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGV 715
NLE+ E+ + +L A L+ TA G RLLR W+ +PL ++ RQ AVA L V
Sbjct: 344 NLELLESGGRQGAKASLIAVLDRTCTAMGARLLRRWITQPLIVIEPLQVRQHAVARL--V 401
Query: 716 NQPFA-LEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHG 774
+ A LE R AL+ LPDMER L R+ A G A + + + +AL
Sbjct: 402 AETMARLEVRSALADLPDMERALNRI-----AQGITV--------ATPRDMTQLRAALRK 448
Query: 775 CELMDQACSSLGAILENTESRQLHHILTPGKGLPAIV-----SILKHFKDAFD------- 822
+ QA +L L E PG+ P +V +L + A D
Sbjct: 449 LPAVAQAVQALLPDLLAAE--------MPGE--PPLVFDVCADVLDLLERALDDDPPALL 498
Query: 823 ----WVEANNSG----RIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITY 874
++ A G R + G D D+ + + + + + ++R+ T I
Sbjct: 499 GSSNYLRAAEEGGERPRRVIRPGFDQRLDALIRASRHAQEFIDRLESKERE---RTGIRS 555
Query: 875 VTIGKDL---YLLEVPESLRGS-VPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKE 930
+ +G + Y +E+ ++ +P YE + + RY T +K G LS A +
Sbjct: 556 LKVGYNQVFGYYIEISRAVDAKLIPAHYERKQTLVNAERYVTEELKYYEGLLSDARLKLV 615
Query: 931 SALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNE 990
+ I QRL + H ++ R +AA A +DA A+A G +P +
Sbjct: 616 DLERDIFQRLCDELQPHLDRLRATIAAVARIDA--LAALAEVAVRGRYVQPRL-----RT 668
Query: 991 EPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050
+ + K HPV+ +L + F+ NDI + G A +++TGPNM GKST LRQV L
Sbjct: 669 DRVLRIKQGRHPVVER-TLSE-PFIGNDIDLDGE-QAQILIITGPNMAGKSTFLRQVALI 725
Query: 1051 VILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLV 1110
++AQ+G+ VPA+ EI VDRIF R+GA+D I GQSTF+ E++ETA +L +T SL+
Sbjct: 726 TLMAQIGSFVPADEAEIGLVDRIFTRIGAQDDIATGQSTFMVEMTETAALLMQSTPRSLI 785
Query: 1111 VLDELGRGTSTSDGQAIA 1128
+LDE+GRGTST DG AIA
Sbjct: 786 ILDEVGRGTSTYDGMAIA 803
>sp|A9WFZ9|MUTS_CHLAA DNA mismatch repair protein MutS OS=Chloroflexus aurantiacus (strain
ATCC 29366 / DSM 635 / J-10-fl) GN=mutS PE=3 SV=1
Length = 966
Score = 238 bits (606), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 241/858 (28%), Positives = 371/858 (43%), Gaps = 126/858 (14%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGE--------------- 376
+Q+ + K + D ++ F+ G FYE F+ DA + A+ LD+ + E
Sbjct: 11 RQYRKLKEEAADAILLFRFGDFYETFDDDAKLIAELLDITLTRKEYAVDKRLPKDQQKLY 70
Query: 377 QPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKG----------SKDKV 426
P G P V +L +GYRV + EQ E + + + S K+
Sbjct: 71 APMAGMPYHAVDRYVSELIARGYRVAIAEQLSETEAMRNDTRPRSVYAAGLTPVESSGKM 130
Query: 427 VKREICAVVTKGTLTEGELLSANPDAS--YLMALTESNQSPASQSTDRCFGICVVDVATS 484
V+R I V+T GT+ + +L PD + YL A+ G+ D++T
Sbjct: 131 VQRAIVRVITPGTVIDPAML---PDRTNNYLAAVIVEQGK---------VGLAYADLSTG 178
Query: 485 RIILGQVMDDLDCSVLCCLLSELRPVEIIKPAN--MLSPETERAILRHTRNPLVNDLVPL 542
+ D L L+ L P E++ P + + P E R L DL PL
Sbjct: 179 EFAAAEFTDARALMQLQAELARLSPAEVLVPDDEALRLPNLEPVQAR-----LSQDLAPL 233
Query: 543 SEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQ-------AEGDGLTCLPGILSELI 595
++ + +L + + R+ S A + C L L
Sbjct: 234 TK--EEREALLPHERVARRLEGASAASWTQGYVTEWPLWRWELATTTEVLCEHLALPSLA 291
Query: 596 STGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALE 655
G G + + G L + + R ++ L G YM+LD
Sbjct: 292 VCGLDGRPLATRAAGALLQYAQVTQRQ---RVSQLRALRVYHTG-----AYMLLDPQTRR 343
Query: 656 NLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGV 715
NLE+ E+ + +L A L+ TA G RLLR W+ +PL ++ RQ AVA L V
Sbjct: 344 NLELLESGGRQGAKASLIAVLDRTCTAMGARLLRRWITQPLIVIEPLQVRQHAVARL--V 401
Query: 716 NQPFA-LEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHG 774
+ A LE R AL+ LPDMER L R+ A G A + + + +AL
Sbjct: 402 AETMARLEVRSALADLPDMERALNRI-----AQGITV--------ATPRDMTQLRAALRK 448
Query: 775 CELMDQACSSLGAILENTESRQLHHILTPGKGLPAIV-----SILKHFKDAFD------- 822
+ QA +L L E PG+ P +V +L + A D
Sbjct: 449 LPAVAQAVQALLPDLLAAE--------MPGE--PPLVFDVCADVLDLLERALDDDPPALL 498
Query: 823 ----WVEANNSG----RIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITY 874
++ A G R + G D D+ + + + + + ++R+ T I
Sbjct: 499 GSSNYLRAAEEGGERPRRVIRPGFDQRLDALIRASRHAQEFIDRLESKERE---RTGIRS 555
Query: 875 VTIGKDL---YLLEVPESLRGS-VPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKE 930
+ +G + Y +E+ ++ +P YE + + RY T +K G LS A +
Sbjct: 556 LKVGYNQVFGYYIEISRAVDAKLIPAHYERKQTLVNAERYVTEELKYYEGLLSDARLKLV 615
Query: 931 SALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNE 990
+ I QRL + H ++ R +AA A +DA A+A G +P +
Sbjct: 616 DLERDIFQRLCDELQPHLDRLRATIAAVARIDA--LAALAEVAVRGRYVQPRL-----RT 668
Query: 991 EPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050
+ + K HPV+ +L + F+ NDI + G A +++TGPNM GKST LRQV L
Sbjct: 669 DRVLRIKQGRHPVVER-TLSE-PFIGNDIDLDGE-QAQILIITGPNMAGKSTFLRQVALI 725
Query: 1051 VILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLV 1110
++AQ+G+ VPA+ EI VDRIF R+GA+D I GQSTF+ E++ETA +L +T SL+
Sbjct: 726 TLMAQIGSFVPADEAEIGLVDRIFTRIGAQDDIATGQSTFMVEMTETAALLMQSTPRSLI 785
Query: 1111 VLDELGRGTSTSDGQAIA 1128
+LDE+GRGTST DG AIA
Sbjct: 786 ILDEVGRGTSTYDGMAIA 803
>sp|A2R1F6|MSH3_ASPNC DNA mismatch repair protein msh3 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=msh3 PE=3 SV=2
Length = 1119
Score = 238 bits (606), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 226/838 (26%), Positives = 378/838 (45%), Gaps = 94/838 (11%)
Query: 327 LSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG-----EQPH-- 379
L+ +KQ + K KHMD V+ ++G + F DA V AKEL + + G E P
Sbjct: 207 LTPMEKQVIDIKRKHMDTVLVVEVGYKFRFFGEDARVAAKELSIVCIPGKLRFDEHPSEA 266
Query: 380 --------CGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREI 431
P ++V++L G++V VV Q ET + +++ R++
Sbjct: 267 SHLDRFASASIPVHRLHVHVKRLVAAGHKVGVVRQIETAA----LKAAGDNRNAPFVRKL 322
Query: 432 CAVVTKGT-LTEGELLS---------ANPDASYLMALTESNQSPASQSTDRCFGICVVDV 481
+ TKGT + + E L A+P YL+ +TE+N GI V
Sbjct: 323 TNLYTKGTYIDDAEGLGGPMPAASGGASPATGYLLCITETNAKGWGNDEKVQVGIVAVQP 382
Query: 482 ATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVN---D 538
AT I+ D S + L + P E++ LS TE+ +++H +N D
Sbjct: 383 ATGDIVYDDFEDGFMRSEIETRLLHIAPCELLIVGE-LSKATEK-LVQHLSGSKLNVFGD 440
Query: 539 LVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTG 598
+ ++T E + + A + A + + +L ++++
Sbjct: 441 KTRVERVLKSKTAAAESHSHVSSFYAGKMKTASAADDAQASS---------LLQKVLNLP 491
Query: 599 DSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLE 658
+ QV L + ++K+ L E + K+ F + + +M+L+ L +LE
Sbjct: 492 E---QVTICLSSMIEHMKEYGL-EYVFELTKY-------FQHFSSRSHMLLNGNTLMSLE 540
Query: 659 VFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQP 718
+++N + G+L+ L+ T FG+R+LR W+ RPL + + ER +AV L+ +
Sbjct: 541 IYQNQTDHTTKGSLFWTLDRTQTRFGQRMLRKWVGRPLLDKSRLEERVNAVEELKNPEKT 600
Query: 719 FALEFRKAL--SRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCE 776
+E K L D+E+ L R++ K E ++ L +
Sbjct: 601 VMVERLKGLLGKVKSDLEKSLIRIYY------------------GKCTRPELLTVLQTMQ 642
Query: 777 LMDQACSSLGAILENT-ESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPH 835
++ Q S + + + S ++ +T LP I+ + F D + A + +
Sbjct: 643 MIAQEFSDVKSPADTGFASTAINEAIT---CLPTILEDVVAFLDKINMHAAKSDDKYAFF 699
Query: 836 GGVDMDYDSACKK--VKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRG- 892
+ D + +K + +E L +H + LG ++ Y ++ YL+EV S
Sbjct: 700 REAEETEDISDQKLGIASVEHELEEHRSVAGQKLGKKTVEYKSVAGIDYLIEVENSSASI 759
Query: 893 -SVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKW 951
VP + S K R+ TP + +L+ + Q + +A L+ + +
Sbjct: 760 KRVPASWVKVSGTKKVSRFHTPEVIQLMRQRDQHKEALAAACDQAFISLLADIATKYQPF 819
Query: 952 RQMVAATAELDALISLA-IASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLG 1010
R V A A LD LI+LA IAS +P + + I HP++ + L
Sbjct: 820 RDSVQALATLDCLIALATIAS--------QPGYVKPEYTDHTCIQVDQGRHPMV--EQLL 869
Query: 1011 KGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPV 1070
+VPNDI + + +L+TGPNMGGKS+ +RQV L I+ Q+G+ VPA+ ++ +
Sbjct: 870 LDSYVPNDIDLDSDKTRA-LLVTGPNMGGKSSYVRQVALIAIMGQIGSYVPAQSAKLGML 928
Query: 1071 DRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
D +F RMGA D+++AG+STF+ ELSETA +L AT SLV+LDELGRGTST DG AIA
Sbjct: 929 DAVFTRMGAFDNMLAGESTFMVELSETADILKQATPRSLVILDELGRGTSTHDGVAIA 986
>sp|Q4KHE3|MUTS_PSEF5 DNA mismatch repair protein MutS OS=Pseudomonas fluorescens (strain
Pf-5 / ATCC BAA-477) GN=mutS PE=3 SV=1
Length = 859
Score = 237 bits (604), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 231/819 (28%), Positives = 365/819 (44%), Gaps = 145/819 (17%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQ------PHCGFPER 385
+Q+W K++H D+++F++MG FYE+F DA AK LD+ Q P CG P
Sbjct: 16 QQYWRLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQAIPMCGIPYH 75
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ KL + G V++ EQ P KG V+R++ ++T GT+++ L
Sbjct: 76 AAEGYLAKLVKLGESVVICEQVGDPA------TSKGP----VERQVVRIITPGTVSDEAL 125
Query: 446 LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLS 505
L D N A +R FG+ V+D+ + V++ L L
Sbjct: 126 LDERRD----------NLIAAVLGDERLFGLAVLDITSGNF---SVLEIKGWENLLAELE 172
Query: 506 ELRPVEIIKPANM---LSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRI 562
+ PVE++ P + L E R + R R P WD E K++ +
Sbjct: 173 RINPVELLIPDDWPQGLPAEKRRGVRR--RAP-----------WDFERDSAH-KSLCQQF 218
Query: 563 TAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDE 622
+ + L G C ++ + + A G L Y K++
Sbjct: 219 STQDLK--------------GFGC------------ETLTLAIGAAGCLLSYAKETQRTA 252
Query: 623 T-LLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVT 681
LR + E L + +VLD + NLE+ + + +G TL + ++ C T
Sbjct: 253 LPHLRSLRHERLDDT----------VVLDGASRRNLEL-DTNLAGGRDNTLQSVVDRCQT 301
Query: 682 AFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALE-FRKALSRLPDMERLLARL 740
A G RLL WL RPL + ++ RQ ++ L + E + L + D+ER+LAR+
Sbjct: 302 AMGSRLLTRWLNRPLRDLKVLEARQSSITCLL---DGYRFERLQPQLKEIGDIERILARI 358
Query: 741 FASSEANGRNSNKVVLYED-AAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHH 799
N R + L + AA +LQE ++ L E+ L+
Sbjct: 359 ---GLRNARPRDLARLRDALAALPELQEAMTEL--------------------EATHLNQ 395
Query: 800 ILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGV-DMDYDSACKKVKEIEASLTK 858
+ P + ++L K D N +I GGV YD+ +++ + + +
Sbjct: 396 LAATTSTYPELAALLA--KAIID-----NPPAVIRDGGVLKTGYDAELDELQSLSENAGQ 448
Query: 859 HL------KEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWT 912
L ++ R L + + Y I Y +E+P P DY R + KG R+ T
Sbjct: 449 FLIDLEAREKARTGLANLKVGYNRIHG--YFIELPSKQAEQAPADYIRRQTLKGAERFIT 506
Query: 913 PNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASD 972
P +K+ + A+S + K + L+ H + A AELD L +LA
Sbjct: 507 PELKEFEDKALSAKSRALAREKMLYDALLETLISHLPPLQDTAGALAELDVLSNLA---- 562
Query: 973 FYEGPTCRPVILD-SCSN--EEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASF 1029
R + LD +C EP + HPV+ + + FV ND+++ N
Sbjct: 563 ------ERALNLDLNCPRFVSEPCMRITQGRHPVV--EQVLTTPFVANDLSLDD--NTRM 612
Query: 1030 ILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQST 1089
+++TGPNMGGKST +RQ L V+LA +G+ VPA E+S VDRIF R+G+ D + G+ST
Sbjct: 613 LVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCELSLVDRIFTRIGSSDDLAGGRST 672
Query: 1090 FLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
F+ E+SETA +L +AT SLV++DE+GRGTST DG ++A
Sbjct: 673 FMVEMSETANILHNATERSLVLMDEVGRGTSTFDGLSLA 711
>sp|P0CO92|MSH3_CRYNJ DNA mismatch repair protein MSH3 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=MSH3 PE=3 SV=1
Length = 1191
Score = 237 bits (604), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 243/867 (28%), Positives = 384/867 (44%), Gaps = 134/867 (15%)
Query: 331 QKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNF--- 387
+KQ+ E K ++ D ++ ++G Y+ DA ++EL + FP RNF
Sbjct: 243 EKQFMEIKEQNRDVLLLMEVGYKYKFHGEDAKTASRELGI---------VAFPNRNFFTA 293
Query: 388 -------SMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTL 440
++V+KL GY+V V+ QTET +K +++ R++ + T T
Sbjct: 294 SIPTHRLHIHVKKLLSLGYKVGVITQTETAAL----KKIGDNRNAPFARKLTHLFTAATY 349
Query: 441 TEGELL-------------------SANPDASYLMALTESNQSPASQSTDRCFGICVVDV 481
E L +A P + L+A+ E AS + +CVV
Sbjct: 350 VEDPSLSSSSSSSSSVRFDDPVVPGTAPPPTNALVAIVEQPVDRASDDRVKVGLVCVVP- 408
Query: 482 ATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAIL------RHT-RNP 534
T I + D + L L+ L P E++ P LS TE+ + +H RN
Sbjct: 409 GTGDITWDEFDDSQIRTELETRLAHLSPAELLLPKQRLSKATEKVLTYFAGEPKHRGRNA 468
Query: 535 LVNDLVPLSEFWDAETTVLEIKNIYN-RITAESLNKADSN-VANSQAEGDGLTCLPGILS 592
+ + + +DA L N Y+ + +++K D N + EG+ L LS
Sbjct: 469 VRIERIDNIPEYDAAFDFL--TNFYHCKEHKATVSKGDVNDERHLMTEGNKQWSLQPKLS 526
Query: 593 E-----------LISTGDSGS-----------QVLSALGGTLFYLKKSFLDETLLRFAKF 630
+ +++G S S QV+ ++ + Y+K+ L+
Sbjct: 527 QDGADISLDEEIYLASGVSSSKAILTLVDFPKQVVISMAVAIRYMKRFGLENAFKH---- 582
Query: 631 ELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRT 690
S F A + +M+L + L NLE+++N G G+L L+HC T GKRLLR
Sbjct: 583 ----TSSFVRFANRSHMLLSSNTLANLEIYQNQTDGGLYGSLIWLLDHCKTRMGKRLLRE 638
Query: 691 WLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRN 750
W+ RPL + ++ R DA+ + N + R L +PD+ R L R
Sbjct: 639 WVGRPLLDVAALKARADAIEEIMENNSYHMEKLRSLLINMPDLVRGLTR----------- 687
Query: 751 SNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAI 810
V Y A +L + L L + ++G + S L++I LP I
Sbjct: 688 ----VQYGKATPNELATLLITL--VRLASEFKPNMGNVFR---SCLLNNI---PNTLPTI 735
Query: 811 VSILKHFKDAFDWVEA--NNSGRII--PHGGVDMDYDSACKKVKEIEASLTKHLKEQRKL 866
+ + F +A + +A N+ + P D+ C V E+E L +HL E RK+
Sbjct: 736 LDTSQRFLNALNLKQARENDVANLWADPDRFPDIQDVKDCISVCEME--LNEHLMELRKI 793
Query: 867 LGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAE 926
L ++ Y+T+ YL+EVP VP + S+ + RY TP I + E +Q
Sbjct: 794 LKKPTLRYITVSGIEYLVEVPIRDTKIVPAQWMKISATRTVNRYHTPKILAITKERTQHL 853
Query: 927 SEKESALKSILQRLIGQFCEHHNKWRQMVAAT---AELDALISLA--IASDFYEGPTCRP 981
+ + + E+H ++V + A +D L+SLA A+ Y C+P
Sbjct: 854 EKLSIVAREAFIAFQSEVAEYH----ELVVVSKQIAVIDCLMSLAQTAAASGY----CKP 905
Query: 982 VILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKS 1041
+ EP + + HP++ + L + +VP DI + I+ TGPNM GKS
Sbjct: 906 KFV-----AEPELKILAGRHPMV--EMLREESYVPFDIHFSKEEGTTKII-TGPNMAGKS 957
Query: 1042 TLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALML 1101
+ +R + L V +AQ+G+ VPA +S D + RMGA D I G+STF+ ELSET+ +L
Sbjct: 958 STVRAMALIVCMAQIGSFVPAASVTLSVHDSVQTRMGASDEIGRGKSTFMVELSETSDIL 1017
Query: 1102 SSATRNSLVVLDELGRGTSTSDGQAIA 1128
+ T SLVVLDELGRGTST DG AIA
Sbjct: 1018 QTITPRSLVVLDELGRGTSTYDGIAIA 1044
>sp|Q30ZX3|MUTS_DESDG DNA mismatch repair protein MutS OS=Desulfovibrio desulfuricans
(strain G20) GN=mutS PE=3 SV=1
Length = 904
Score = 236 bits (602), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 241/820 (29%), Positives = 372/820 (45%), Gaps = 123/820 (15%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYM------KGEQPHCGFPER 385
+Q+ K+++ D ++F++MG FYELF DA V A+EL + + + P CG P
Sbjct: 13 EQYMNIKAEYPDALLFYRMGDFYELFFEDAEVAARELQIALTCRNPNAENKVPMCGVPHH 72
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ + +L KGY+V + EQ E P R+ KG +VKR + V+T GT E E
Sbjct: 73 SARSYISQLVDKGYKVAICEQMEDP------REAKG----LVKRGVIRVLTSGTALEDEN 122
Query: 446 LSANPDA-SYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLL 504
LS P A +YL AL A G VD +T Q + + L +
Sbjct: 123 LS--PKAHTYLGALCWDKSEGAG-------GFAWVDFSTGEWSGLQSRKEQE---LWQWV 170
Query: 505 SELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITA 564
++ P E++ A+ L+P A L T VP ++D Y R +A
Sbjct: 171 QKMAPRELLL-ADTLTPP---ASLELTETQFSK--VPERAYFD-----------YKR-SA 212
Query: 565 ESLNKADSNVANSQAEGDGLTCLPGILSELISTG-DSGSQVLSALGGTLFYLKKSFLDET 623
E + A ++EL + G ++ +++ A G L YL ++
Sbjct: 213 EKIMSAQQ------------------VAELGALGLENRKELVRACGALLTYLSQT----- 249
Query: 624 LLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAF 683
K +L F + +++LD NLE+F GTL+ L+H VT
Sbjct: 250 ----QKQDLNHLCQFKPLNLNRHLLLDEITERNLELFRRLDGRKGKGTLWHVLDHTVTPM 305
Query: 684 GKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFAS 743
G RLL+ L P I E Q+AV+ N + R+AL + D+ERL R+F
Sbjct: 306 GGRLLQERLKHPWREQAPIDETQEAVSHFFAHNT-LRRQLREALDTVYDIERLSTRIFL- 363
Query: 744 SEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTP 803
N+ + A +Q + + A+ EL++ + G T QL
Sbjct: 364 --------NRATPRDYVALRQSLKALPAVR--ELLEAPQTGDGRY--ATPEEQL------ 405
Query: 804 GKGLPAIVS-ILKHFKDAFDWVE------ANNSGRIIPHGGV-DMDYDSACKKVKEIEAS 855
G LP + +LK + D D+ + +N +I GG+ + A ++ ++
Sbjct: 406 GAALPPFLHRMLKSWDDLADYHDLLEKALVDNPPHVITEGGLFRQGFHPALDELMDLSEH 465
Query: 856 LTKHLKEQRKLLGD----TSITYVTIGKDL---YLLEVPESLRGSVPRDYELRSSKKGFF 908
L + LL + T I+ + +G + Y EVP+S+ +P + R +
Sbjct: 466 GASKLHD---LLAEVQQTTGISKIKLGNNRVFGYYFEVPKSVSEELPDTFVRRQTLANAE 522
Query: 909 RYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLA 968
RY + +K+L +L A ++++ + Q+L + + M A LD LA
Sbjct: 523 RYTSERLKELEEKLFSAADKRKTMELKLFQQLREHVAQARPRVLFMADLLATLDHWQGLA 582
Query: 969 IASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNAS 1028
A+ + RPV+ D I + HPV+ + G F+PND+ I
Sbjct: 583 EAARHWNW--VRPVLHDGQD-----IVIREGRHPVVEAVQ-GPAGFIPNDLRIDD--QRR 632
Query: 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQS 1088
+L+TGPNM GKST+LRQ + ILAQ+G+ VPA I DRIF R+GA D++ GQS
Sbjct: 633 LLLITGPNMAGKSTVLRQAAIICILAQIGSFVPAREARIGLCDRIFSRVGASDNLAQGQS 692
Query: 1089 TFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
TF+ E+ ETA +L ATR SLV+LDE+GRGTST DG A+A
Sbjct: 693 TFMVEMMETARILRQATRRSLVILDEIGRGTSTFDGLALA 732
>sp|A0LG76|MUTS_SYNFM DNA mismatch repair protein MutS OS=Syntrophobacter fumaroxidans
(strain DSM 10017 / MPOB) GN=mutS PE=3 SV=1
Length = 889
Score = 236 bits (602), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 229/812 (28%), Positives = 362/812 (44%), Gaps = 121/812 (14%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQ------PHCGFPER 385
+Q+ E K K+ D ++ ++MG FYE+F DA + L++ ++ P CG P
Sbjct: 9 QQYLEIKEKYPDALLLYRMGDFYEMFMDDAVTASGLLEIALTSRDRQSEVRIPMCGVPYH 68
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ +L G +V + +Q E P RK KG +V+RE+ V+T G + + +
Sbjct: 69 AAEGYIARLVSAGKKVAICDQVEDP------RKAKG----LVRREVTRVITPGLVLDAQN 118
Query: 446 LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLS 505
L+A +YL A++ S + FG+ +DV+T+
Sbjct: 119 LAAK-QPNYLAAVSNS-------TAGERFGLAFLDVSTA--------------------- 149
Query: 506 ELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYN-RITA 564
E + VEI +L E I R L++D D E+ +Y +T
Sbjct: 150 EFKMVEIESREALL----EELIRVSPRELLLSD-------DDEHPWAEELPKLYGIALTP 198
Query: 565 ESLNKADSNVANSQAEGD-GLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLD-- 621
++ D A G + L G IS D G + A G L Y++ + L
Sbjct: 199 LGADRFDGKRAEEALVGHFRVHSLEGFG---ISGMDLG---IRAAGAILAYMQANLLGSC 252
Query: 622 ETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVT 681
+ + R LLP S + +M++D + NLE+F + G+L L+ T
Sbjct: 253 DHITR-----LLPYS------RGDFMIVDEAGVRNLEIFHSQSFQGRKGSLIDILDETKT 301
Query: 682 AFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLF 741
A G R L+ WL PL + I R++A+A L N P E LSR+ D+ERL
Sbjct: 302 AMGGRKLQQWLRYPLLDLARINNRREAIAEL-AANAPMRGETLGLLSRISDVERL----- 355
Query: 742 ASSEANGRNSNKVVLYED--AAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHH 799
NGRNS D A KK LQ +LGA L S +L
Sbjct: 356 -----NGRNSTGTSTPRDLVALKKSLQNL--------------PALGAALAELTSPRLSE 396
Query: 800 ILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKH 859
+ L + I++ + D + + GV + D + ++ + + +
Sbjct: 397 LRARWDDLADVADIIE--RTLLDPPPPGLAAGGVISAGVSEELDHFVRLSRDAKGWMADY 454
Query: 860 LKEQRKLLGDTSITYVTIGKDL---YLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIK 916
+QR+ DT I+ + + + Y +E+ + SVP Y + + R+ T +K
Sbjct: 455 EVQQRR---DTGISSLKVRYNKVFGYYIEISNANLNSVPEHYFRKQTLVNAERFITEELK 511
Query: 917 KLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEG 976
++ QAE ++ + I L + + + A+LD + +LA + Y+
Sbjct: 512 TFETQVLQAEEKRLELEQQIFADLRARIAREAGRIQAAADRIADLDCVSALAEVACRYD- 570
Query: 977 PTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPN 1036
CRPV+ +E I + HPV+ L G FVPND+ + + +++TGPN
Sbjct: 571 -YCRPVM-----DESDAIRIRDGRHPVI-EHYLKDGTFVPNDLDMD-QRDQQVLVITGPN 622
Query: 1037 MGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSE 1096
M GKST+LRQ L V++ +G+ VPA I VDRIF R+GA D + G+STF+ E+ E
Sbjct: 623 MAGKSTILRQAALIVLMGHIGSFVPASEAHIGLVDRIFTRVGASDDLARGRSTFMVEMQE 682
Query: 1097 TALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
TA +L AT SL++LDE+GRGTST DG +IA
Sbjct: 683 TANILHHATPRSLIILDEIGRGTSTYDGLSIA 714
>sp|P0CO93|MSH3_CRYNB DNA mismatch repair protein MSH3 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=MSH3 PE=3 SV=1
Length = 1191
Score = 236 bits (601), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 242/867 (27%), Positives = 384/867 (44%), Gaps = 134/867 (15%)
Query: 331 QKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNF--- 387
+KQ+ E K ++ D ++ ++G Y+ DA ++EL + FP RNF
Sbjct: 243 EKQFMEIKEQNRDVLLLMEVGYKYKFHGEDAKTASRELGI---------VAFPNRNFFTA 293
Query: 388 -------SMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTL 440
++V+KL GY+V V+ QTET +K +++ R++ + T T
Sbjct: 294 SIPTHRLHIHVKKLLSLGYKVGVITQTETAAL----KKIGDNRNAPFARKLTHLFTAATY 349
Query: 441 TEGELL-------------------SANPDASYLMALTESNQSPASQSTDRCFGICVVDV 481
E L +A P + L+A+ E AS + +CVV
Sbjct: 350 VEDPSLSSSSSSSSSVRFDDPVVPGTAPPPTNALVAIVEQPVDRASDDRVKVGLVCVVP- 408
Query: 482 ATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAIL------RHT-RNP 534
T I + D + L L+ L P E++ P L+ TE+ + +H RN
Sbjct: 409 GTGDITWDEFDDSQIRTELETRLAHLSPAELLLPKQRLTKATEKVLTYFAGEPKHRGRNA 468
Query: 535 LVNDLVPLSEFWDAETTVLEIKNIYN-RITAESLNKADSN-VANSQAEGDGLTCLPGILS 592
+ + + +DA L N Y+ + +++K D N + EG+ L LS
Sbjct: 469 VRIERIDNIPEYDAAFDFL--TNFYHCKEHKATVSKGDVNDERHLMTEGNKQWSLQPKLS 526
Query: 593 E-----------LISTGDSGS-----------QVLSALGGTLFYLKKSFLDETLLRFAKF 630
+ +++G S S QV+ ++ + Y+K+ L+
Sbjct: 527 QDGADISLDEEIYLASGVSSSKAILTLVDFPKQVVISMAVAIRYMKRFGLENAFKH---- 582
Query: 631 ELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRT 690
S F A + +M+L + L NLE+++N G G+L L+HC T GKRLLR
Sbjct: 583 ----TSSFVRFANRSHMLLSSNTLANLEIYQNQTDGGLYGSLIWLLDHCKTRMGKRLLRE 638
Query: 691 WLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRN 750
W+ RPL + ++ R DA+ + N + R L +PD+ R L R
Sbjct: 639 WVGRPLLDVAALKARADAIEEIMENNSYHMEKLRSLLINMPDLVRGLTR----------- 687
Query: 751 SNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAI 810
V Y A +L + L L + ++G + S L++I LP I
Sbjct: 688 ----VQYGKATPNELATLLITL--VRLASEFKPNMGNVFR---SCLLNNI---PNTLPTI 735
Query: 811 VSILKHFKDAFDWVEA--NNSGRII--PHGGVDMDYDSACKKVKEIEASLTKHLKEQRKL 866
+ + F +A + +A N+ + P D+ C V E+E L +HL E RK+
Sbjct: 736 LDTSQRFLNALNLKQARENDVANLWADPDRFPDIQDVKDCISVCEME--LNEHLMELRKI 793
Query: 867 LGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAE 926
L ++ Y+T+ YL+EVP VP + S+ + RY TP I + E +Q
Sbjct: 794 LKKPTLRYITVSGIEYLVEVPIRDTKIVPAQWMKISATRTVNRYHTPKILAITKERTQHL 853
Query: 927 SEKESALKSILQRLIGQFCEHHNKWRQMVAAT---AELDALISLA--IASDFYEGPTCRP 981
+ + + E+H ++V + A +D L+SLA A+ Y C+P
Sbjct: 854 EKLSIVAREAFIAFQSEVAEYH----ELVVVSKQIAVIDCLMSLAQTAAASGY----CKP 905
Query: 982 VILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKS 1041
+ EP + + HP++ + L + +VP DI + I+ TGPNM GKS
Sbjct: 906 KFV-----AEPELKILAGRHPMV--EMLREESYVPFDIHFSKEEGTTKII-TGPNMAGKS 957
Query: 1042 TLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALML 1101
+ +R + L V +AQ+G+ VPA +S D + RMGA D I G+STF+ ELSET+ +L
Sbjct: 958 STVRAMALIVCMAQIGSFVPAASVTLSVHDSVQTRMGASDEIGRGKSTFMVELSETSDIL 1017
Query: 1102 SSATRNSLVVLDELGRGTSTSDGQAIA 1128
+ T SLVVLDELGRGTST DG AIA
Sbjct: 1018 QTITPRSLVVLDELGRGTSTYDGIAIA 1044
>sp|Q9SMV7|MSH7_ARATH DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana GN=MSH7
PE=1 SV=1
Length = 1109
Score = 235 bits (600), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 173/524 (33%), Positives = 258/524 (49%), Gaps = 64/524 (12%)
Query: 260 VKIFGSDKLSNGFDNPVMGDVSERFSAREADKFHFLGPDR-RDAKRRRPGDVYYDPRTLY 318
V + S+K +PV G+ E E KF +L R RDA RRRP D YD +TL+
Sbjct: 202 VPVLDSNKRLKMLQDPVCGEKKE---VNEGTKFEWLESSRIRDANRRRPDDPLYDRKTLH 258
Query: 319 LPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQP 378
+PPD + +S QKQ+W KS++MD V+FFK+GKFYEL+E+DA +G KELD +
Sbjct: 259 IPPDVFKKMSASQKQYWSVKSEYMDIVLFFKVGKFYELYELDAELGHKELDWKMTMSGVG 318
Query: 379 HC---GFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVV 435
C G E V+KL +GY+V +EQ ET +Q + R + ++ R++ V+
Sbjct: 319 KCRQVGISESGIDEAVQKLLARGYKVGRIEQLETSDQAKAR-----GANTIIPRKLVQVL 373
Query: 436 TKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDL 495
T T +EG + PDA +L+A+ E ST +G VD A R +G + DD
Sbjct: 374 TPSTASEGNI---GPDAVHLLAIKEIKMELQKCST--VYGFAFVDCAALRFWVGSISDDA 428
Query: 496 DCSVLCCLLSELRPVEIIKPANMLSPETERAILRHT-RNPLVNDLVPLSEFWDAETTVLE 554
C+ L LL ++ P E++ + LS E ++A+ ++T L P+ + +T
Sbjct: 429 SCAALGALLMQVSPKEVLYDSKGLSREAQKALRKYTLTGSTAVQLAPVPQVM-GDTDAAG 487
Query: 555 IKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFY 614
++NI I + K S N +G L+E LSALG + +
Sbjct: 488 VRNI---IESNGYFKGSSESWNCAVDG---------LNEC-------DVALSALGELINH 528
Query: 615 LKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMV------LDAPALENLEVFENSRSGDS 668
L + L++ L GD+ PY V +D + NLE+F NS G
Sbjct: 529 LSRLKLEDVL------------KHGDIF--PYQVYRGCLRIDGQTMVNLEIFNNSCDGGP 574
Query: 669 SGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALS 728
SGTLY L++CV+ GKRLLR W+ PL + I +R D V ++ + + L
Sbjct: 575 SGTLYKYLDNCVSPTGKRLLRNWICHPLKDVESINKRLDVVEEFTANSESMQIT-GQYLH 633
Query: 729 RLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISAL 772
+LPD+ERLL R+ +S S+ VL KK L++ + A
Sbjct: 634 KLPDLERLLGRIKSSV-----RSSASVLPALLGKKVLKQRVKAF 672
Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/206 (48%), Positives = 123/206 (59%), Gaps = 17/206 (8%)
Query: 937 LQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVIL-------DSCSN 989
L LI F E +W +++ + LD L S AIA+ G RPVI +
Sbjct: 745 LTILIELFIERATQWSEVIHTISCLDVLRSFAIAASLSAGSMARPVIFPESEATDQNQKT 804
Query: 990 EEPYISAKSLGHPVLRSDSLGKGEF-VPNDITIG------GHGNASFILLTGPNMGGKST 1042
+ P + + L HP + G+ VPNDI +G G + +LLTGPNMGGKST
Sbjct: 805 KGPILKIQGLWHPFAVA---ADGQLPVPNDILLGEARRSSGSIHPRSLLLTGPNMGGKST 861
Query: 1043 LLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLS 1102
LLR CLAVI AQ+G VP E EIS VD IF R+GA D IM G+STFL E +ETA +L
Sbjct: 862 LLRATCLAVIFAQLGCYVPCESCEISLVDTIFTRLGASDRIMTGESTFLVECTETASVLQ 921
Query: 1103 SATRNSLVVLDELGRGTSTSDGQAIA 1128
+AT++SLV+LDELGRGTST DG AIA
Sbjct: 922 NATQDSLVILDELGRGTSTFDGYAIA 947
>sp|A5G447|MUTS_GEOUR DNA mismatch repair protein MutS OS=Geobacter uraniireducens (strain
Rf4) GN=mutS PE=3 SV=1
Length = 872
Score = 233 bits (594), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 240/829 (28%), Positives = 382/829 (46%), Gaps = 137/829 (16%)
Query: 324 LRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMK-------GE 376
+ L+ +Q+ E K+ + D ++FF++G FYE+F DA ++ LD+ +
Sbjct: 1 MSQLTPMMRQYLEIKAGYPDAILFFRLGDFYEMFLDDAVKASRILDITLTSRNKNSDGAD 60
Query: 377 QPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVT 436
P CG P + + + KL G +V + EQ E P+ + KG +V+RE+ V+T
Sbjct: 61 VPLCGIPYHSATPYIAKLIEAGEKVAICEQVEDPKSV------KG----IVRREVVKVIT 110
Query: 437 KGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLD 496
G + + LS + +YL++L + + +G+ +D++T + + +D D
Sbjct: 111 PGLVVDSSNLSPKEN-NYLLSLYCDDAT--------TWGLSYLDLSTGEFRVTE-LDGFD 160
Query: 497 CSV--LCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLE 554
+V + C+ +P EII PA + R N + +L+P++ TT ++
Sbjct: 161 AAVAEVACV----KPREIILPA----------VFRE--NGRMKELMPVTA--GLATTFVD 202
Query: 555 IKNIYNRITAESLNKADSNVANSQAEG-DGLTCLPGILSELISTGDSGSQVLSALGGTLF 613
+Y+ + L + A+ A G DGL +TG L A+ L
Sbjct: 203 -DWVYDLDYCKRLIGSHFGGASPSALGCDGL-----------NTG------LYAICAVLH 244
Query: 614 YLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLY 673
YL+++ K + + Y+VLD NLE+ G G+L
Sbjct: 245 YLQET---------QKGRAGHVNSIIPYTNREYLVLDESTRRNLELTATLAEGKRKGSLL 295
Query: 674 AQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDM 733
++ TA G R ++ W+ PL I ERQDA+ EF + SR +
Sbjct: 296 GLMDRTTTAMGGRKMKQWINYPLVTIQSITERQDAIE-----------EFVQDPSRRTAL 344
Query: 734 ERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTE 793
LL ++ NGR S A K L M ++ + + I E
Sbjct: 345 VFLLNGVYDLERLNGRIS-----LASAGAKDLVA----------MKESLARIPGIKELLA 389
Query: 794 S------RQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMD-YDSAC 846
S R+L+ L P LP +V ++ A VE N ++ GG+ D Y++
Sbjct: 390 SSSSVLLRRLNEGLNP---LPDLVGLI-----AGGIVE--NPPFVLRDGGIIADGYNAEL 439
Query: 847 KKVKEIE---ASLTKHLKEQRKLLGDTSITYVTIGKDL---YLLEVPESLRGSVPRDYEL 900
+++ I L+ Q K G T I + I + Y +EV ++ S+P DY
Sbjct: 440 DELRAISREGKGFIARLEAQEK--GRTGINSLKIRYNKVFGYYIEVTKTNLTSIPADYIR 497
Query: 901 RSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAE 960
+ + RY TP +K+ ++ AE S+ Q + H + A
Sbjct: 498 KQTLANAERYITPELKEYEDKVLGAEDRIRELEFSLFQEIRETVTGHGEIVARTADCLAT 557
Query: 961 LDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGE-FVPNDI 1019
LD L SLA + +E CRP++ D + +IS HPV+ +++ +GE FVPND
Sbjct: 558 LDVLASLAELA--HERNYCRPLVDDGTT---LFISEGR--HPVI--EAMHQGERFVPND- 607
Query: 1020 TIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGA 1079
T+ +G I++TGPNM GKST +RQV L ++AQ+G+ VPA IS VDRIF R+GA
Sbjct: 608 TLLDNGENQLIIITGPNMAGKSTFMRQVALITLMAQMGSFVPATEAHISLVDRIFTRVGA 667
Query: 1080 KDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
D++ GQSTF+ E+ E+A +L AT SLV+LDE+GRGTST DG +IA
Sbjct: 668 SDNLARGQSTFMVEMMESANILRHATPKSLVILDEIGRGTSTFDGVSIA 716
>sp|A8G9Z9|MUTS_SERP5 DNA mismatch repair protein MutS OS=Serratia proteamaculans (strain
568) GN=mutS PE=3 SV=1
Length = 851
Score = 233 bits (593), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 241/843 (28%), Positives = 376/843 (44%), Gaps = 139/843 (16%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMK-----GEQ-PHCGFPER 385
+Q+ K++H + ++F++MG FYELF DA ++ LD+ K GE P G P
Sbjct: 15 QQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGVPHH 74
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ KL + G V + EQ P KG V+R++ +VT GT+T+ L
Sbjct: 75 AVENYLAKLVQLGESVALCEQIGDPA------TSKGP----VERKVVRIVTPGTITDEAL 124
Query: 446 LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLS 505
L D N A R FG +D+++ R +V + D + L
Sbjct: 125 LQERQD----------NLLAAIWQDARGFGYATLDISSGRF---RVAEPADIETMAAELQ 171
Query: 506 ELRPVEIIKPANMLSPET-ERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITA 564
PA +L PET E+ L R+ L PL EF + ET ++
Sbjct: 172 R------TNPAELLYPETFEQMSLIEQRHGLRRR--PLWEF-EPETARQQL--------- 213
Query: 565 ESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETL 624
N Q LT G+ + Q L A G L Y+K +
Sbjct: 214 -----------NLQFGTRDLTGF-GV--------EQAHQALRAAGCLLQYVKDT------ 247
Query: 625 LRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFG 684
+ L G ++ +++DA NLE+ +N SG S TL A L+ VTA G
Sbjct: 248 ---QRTSLPHIRGITMERQQDGIIMDAATRRNLELTQNL-SGGSENTLAAILDRSVTAMG 303
Query: 685 KRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASS 744
R+L+ WL P + ++ RQ A+ L Q + + +L ++ D+ER+LARL A
Sbjct: 304 SRMLKRWLHMPTRDIKVLNNRQQAIGSL----QDLYSDLQPSLRQVGDLERILARL-ALR 358
Query: 745 EANGRNSNKVVLYEDAAKKQLQEFISALHGCE--LMDQACSSLGAILENTESRQLHHILT 802
A R+ ++ A +QL + + L G E + Q S +G E + + +
Sbjct: 359 SARPRDLARM----RHAFQQLPDIHALLKGVETPYVQQLLSQVGQFDELQDLLERAVVEA 414
Query: 803 PGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKE 862
P P +V + G I P Y+S + + + T +L
Sbjct: 415 P----PVLV---------------RDGGVIAP------GYNSELDEWRALADGATDYLDR 449
Query: 863 ----QRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKL 918
+R+ LG ++ G Y ++V VP Y R + K RY P +K+
Sbjct: 450 LEIREREKLGLDTLKVGFNGVHGYYIQVSRGQSHLVPIHYVRRQTLKNAERYIIPELKEY 509
Query: 919 LGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDF--YEG 976
++ ++ + + K + + L H +Q AA AELD L +LA ++ Y
Sbjct: 510 EDKVLTSKGKALAIEKGLYEELFDLLLPHLGDLQQSAAALAELDVLANLAERAETLNYAC 569
Query: 977 PTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPN 1036
PT +E+P + HPV+ + + F+ N +++ +++TGPN
Sbjct: 570 PTI---------SEQPGVRITEGRHPVV--EQVLSEPFISNPLSLSPQRR--MLIITGPN 616
Query: 1037 MGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSE 1096
MGGKST +RQ L V++A +G+ VPA I PVDRIF R+GA D + +G+STF+ E++E
Sbjct: 617 MGGKSTYMRQTALIVLMAHIGSYVPASKAVIGPVDRIFTRVGAADDLASGRSTFMVEMTE 676
Query: 1097 TALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDCF 1156
TA +L +AT NSLV++DE+GRGTST DG ++A + ++LA TLF A F
Sbjct: 677 TANILHNATENSLVLMDEIGRGTSTYDGLSLAWACA--ENLASRIKAMTLF----ATHYF 730
Query: 1157 QLT 1159
+LT
Sbjct: 731 ELT 733
>sp|B0JFY0|MUTS_MICAN DNA mismatch repair protein MutS OS=Microcystis aeruginosa (strain
NIES-843) GN=mutS PE=3 SV=1
Length = 882
Score = 233 bits (593), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 230/814 (28%), Positives = 364/814 (44%), Gaps = 99/814 (12%)
Query: 327 LSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMK-------GEQPH 379
L+ + + E K + + ++ +++G F+E F DA + ++EL+L G
Sbjct: 30 LTPMYQHYVEVKETYPNALLLYRVGDFFECFFQDAVIISRELELVLTSKEGGKGIGRVAM 89
Query: 380 CGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGT 439
G P L KGY V + +Q E E ++ ++V+R I ++T GT
Sbjct: 90 TGVPHHALERYSRLLVEKGYAVAICDQVEDS-------TEAAAEKRLVERAITKLLTPGT 142
Query: 440 LTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSV 499
LT+ +L+A + ++L A+ + ++ +G+ D++T Q D +
Sbjct: 143 LTDEGMLNAKKN-NFLAAVVITGEN---------WGLAYSDISTGEFYTTQASD---LTA 189
Query: 500 LCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIY 559
L LS L+P EI+ P N +P+ R + ++ + +P D+ L + I+
Sbjct: 190 LSLELSRLQPSEILFPIN--APDLNRILRPGEKSDHLPPCLP-----DSFCYSLRPQTIF 242
Query: 560 NRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSF 619
E+ N+ EG G LP + A GG L Y++ +
Sbjct: 243 T--LTEAKNRLLITYKMRSLEGMGCEHLP--------------LAIRAAGGLLEYIEDT- 285
Query: 620 LDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHC 679
K +P + +++LD NLE+ + R G G+L ++
Sbjct: 286 --------QKANQVPLQPLKTYSISEFLILDGQTRRNLEITQTVRDGSFYGSLLWAIDRT 337
Query: 680 VTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLAR 739
TA G R LR WL +PL +S IR RQD + L+ N + R+ L + D+ERL R
Sbjct: 338 CTAMGSRALRRWLLQPLLDSRGIRARQDTIQELKD-NPALRQDIRQKLREIYDIERLSGR 396
Query: 740 LFASSEANGRNSNKVVLYEDAAKKQLQEFISAL-HGCELMDQACSSLGAILENTESRQLH 798
+ A + AN R+ +L A+ +L + + + G +A + A LE + +
Sbjct: 397 VGAGT-ANARD----LLSLAASLVKLADLAALVASGNSPYLKALQQIPADLEKLGQQVIA 451
Query: 799 HILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTK 858
H++ P + H K+ G +I G +D D+ + +E+ K
Sbjct: 452 HLVES----PPL-----HLKE----------GGVIREG-IDAQLDALRRDYQEV-IDWFK 490
Query: 859 HLKEQRKLLGDTSITYVTIGKDL-YLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKK 917
+L+ K S V+ K Y + +P S P+DY + + RY T +K+
Sbjct: 491 NLETTEKERTGISNLKVSYNKTFGYYISLPRSKADFAPKDYVRKQTLVNEERYITTELKE 550
Query: 918 LLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGP 977
+ A E I L Q E + R+ VA +++ Y+G
Sbjct: 551 KENIILTAVDELNKLEYEIFSDLRRQVAEFSPEIRE-VATKVAALDVLAALAEIAVYQG- 608
Query: 978 TCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASF---ILLTG 1034
CRP I D I K HPV+ SLG G FVPN I +G + I+LTG
Sbjct: 609 YCRPEIADG-----RLIDIKDGRHPVVEQ-SLGAGFFVPNSINLGNQEGLEYPDLIILTG 662
Query: 1035 PNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTEL 1094
PN GKS LRQV L +LAQ G+ VPA+ +IS DRIF R+GA D + GQSTF+ E+
Sbjct: 663 PNASGKSCYLRQVGLIQLLAQTGSFVPAKSAKISICDRIFTRVGAVDDLATGQSTFMVEM 722
Query: 1095 SETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
+ETA +L+ AT SLV+LDE+GRGT+T DG +IA
Sbjct: 723 NETANILNHATDRSLVLLDEIGRGTATFDGLSIA 756
>sp|A5W816|MUTS_PSEP1 DNA mismatch repair protein MutS OS=Pseudomonas putida (strain F1 /
ATCC 700007) GN=mutS PE=3 SV=1
Length = 857
Score = 231 bits (589), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 229/817 (28%), Positives = 362/817 (44%), Gaps = 141/817 (17%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQ------PHCGFPER 385
+Q+W+ K++H D+++F++MG FYE+F DA AK LD+ Q P CG P
Sbjct: 12 QQYWKLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQSIPMCGIPFH 71
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ + KL + G V++ EQ P KG V+R++ ++T GT+++ L
Sbjct: 72 SLEGYLAKLVKLGESVVICEQIGDPA------TSKGP----VERQVVRIITPGTVSDEAL 121
Query: 446 LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLS 505
L D N A +R FG+ V+D+ + + ++ + LL+
Sbjct: 122 LDERRD----------NLIAALLGDERLFGLAVLDITSGNFSVQEIKGWEN------LLA 165
Query: 506 ELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAE 565
EL E + P +L P+ L + P P WD ++R
Sbjct: 166 EL---ERLNPVELLIPDDWPRDLPAEKRPGARRRAP----WD-----------FDR---- 203
Query: 566 SLNKADSNVANSQAEGD--GLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDET 623
+ A + A D G C D + + A G L Y K++
Sbjct: 204 --DSARKALCQQFATKDLKGFGC------------DKLTLAIGAAGCLLTYAKETQRTAL 249
Query: 624 -LLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTA 682
LR + E L + ++LD + NLE+ N +G TL + ++ C TA
Sbjct: 250 PHLRSLRHERLDDT----------VILDGASRRNLELDINL-AGGRDNTLQSVIDRCQTA 298
Query: 683 FGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALE-FRKALSRLPDMERLLARLF 741
RLL WL RPL + +++ RQD++ R + + E + L + D+ER+LAR
Sbjct: 299 MASRLLSRWLNRPLRDLKVLQARQDSI---RCLLDSYRFEKLQPQLKEIGDIERILAR-- 353
Query: 742 ASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHIL 801
+ +A + L AL + A + L E+ L +
Sbjct: 354 -------------IGLRNARPRDLARLRDALGALPELQNAMTEL-------EAPHLARLA 393
Query: 802 TPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGV-DMDYDSACKKVKEIEASLTKHL 860
P + S+L+ +N +I GGV YD+ ++ I + + L
Sbjct: 394 AITGTYPELASLLER-------AIIDNPPAVIRDGGVLKAGYDNELDELLAISENAGQFL 446
Query: 861 ------KEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPN 914
++ R L + + Y + Y +E+P P DY R + KG R+ TP
Sbjct: 447 IDLEAREKARTGLANLKVGYNRVHG--YFIELPTKQAEQAPGDYIRRQTLKGAERFITPE 504
Query: 915 IKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFY 974
+K + A+S + K + L+ H + AA AELD L +LA
Sbjct: 505 LKAFEDKALSAKSRALAREKMLYDALLETLISHLAPLQDSAAALAELDVLSNLA------ 558
Query: 975 EGPTCRPVILD-SCSN--EEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFIL 1031
R + LD SC +EP + + HPV+ + + FV ND+ G + ++
Sbjct: 559 ----ERALNLDLSCPRFVDEPCLRIEQGRHPVV--EQVLTTPFVANDL--GLDNSTRMLI 610
Query: 1032 LTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFL 1091
+TGPNMGGKST +RQ L V+LA +G+ VPA E+S VDRIF R+G+ D + G+STF+
Sbjct: 611 ITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFM 670
Query: 1092 TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
E+SETA +L +AT SLV++DE+GRGTST DG ++A
Sbjct: 671 VEMSETANILHNATDRSLVLMDEVGRGTSTFDGLSLA 707
>sp|C6DZZ3|MUTS_GEOSM DNA mismatch repair protein MutS OS=Geobacter sp. (strain M21)
GN=mutS PE=3 SV=1
Length = 869
Score = 231 bits (588), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 231/815 (28%), Positives = 358/815 (43%), Gaps = 126/815 (15%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMK-------GEQPHCGFPE 384
+Q+ E K++H D ++FF+ G FYE+F DA ++ L + E P CG P
Sbjct: 9 RQFLEIKAEHPDAILFFRCGDFYEMFLDDAVKASRILGITLTSRNKNADGSEVPLCGIPY 68
Query: 385 RNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGE 444
+ + + KL G +V + EQ E P+Q KG +VKRE+ V+T G + E
Sbjct: 69 HSCAPYIAKLVEAGEKVAICEQAEDPKQ------AKG----IVKREVVKVITPGLVIEDA 118
Query: 445 LLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSV--LCC 502
LS + +YL+AL + C+G+ +D++T + + +D L ++ + C
Sbjct: 119 SLSPKEN-NYLLALCCDGE---------CYGLSYLDLSTGEFRVTE-LDGLQAALAEVTC 167
Query: 503 LLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFW--DAETTVLEIKNIYN 560
+ P EII P E +R + H +V+ + E W D + + N +
Sbjct: 168 I----GPREIILPV-CFREEPKRKEVAHV---IVDRSITYFEEWVYDPDYCKRLVANQFK 219
Query: 561 RITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFL 620
TAESL G LP L A G L YL +
Sbjct: 220 GATAESL---------------GCDRLP--------------TALLAAGAVLHYLVDT-- 248
Query: 621 DETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCV 680
K + + +++LD NLE+ G G+L ++ V
Sbjct: 249 -------QKGHAPHVTCITPYNESEHLLLDESTRRNLELTATLSEGKRKGSLLGLMDRTV 301
Query: 681 TAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARL 740
TA G R L+ W+ PL + I RQDA+ E +A M+ LLA +
Sbjct: 302 TAMGGRKLKQWINYPLMDLKKIWLRQDAIQ-----------ELMEAPGTREAMKSLLAGV 350
Query: 741 FASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHI 800
+ NGR S A+ K L S+L + + ++ GA L
Sbjct: 351 YDLERLNGRIS-----LASASAKDLSALRSSLSRLPAIKEQVAACGAGLL---------- 395
Query: 801 LTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMD-YDSACKKVKEIE---ASL 856
K L A + L D ++ ++ GG+ D Y+ +++ I
Sbjct: 396 ----KELDAGIDPLDELSDLISSAIVDDPPFVLRDGGIIADGYNQELDELRAISREGKGF 451
Query: 857 TKHLKEQRKLLGDTSITYVTIGKDL---YLLEVPESLRGSVPRDYELRSSKKGFFRYWTP 913
L+ Q K G T I+ + I + Y +EV ++ ++P DY R + RY TP
Sbjct: 452 IARLEAQEK--GRTGISSLKIRYNKVFGYYIEVTKANVSAIPDDYIRRQTLANAERYITP 509
Query: 914 NIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDF 973
+K+ ++ AE + S+ Q + + + A LD L+SL+ +
Sbjct: 510 ELKEYEEKVLGAEDRIKDLEFSLFQEVREAAAAQGERIARSADRLACLDVLVSLSELA-- 567
Query: 974 YEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLT 1033
++ CRP + +E +S HPV+ D FVPND T+ +G I++T
Sbjct: 568 HDKGYCRPEV-----HEGSELSITEGRHPVI-EDMHSAERFVPND-TLLDNGENQLIIIT 620
Query: 1034 GPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTE 1093
GPNM GKST +RQV L ++AQ+G+ VPA+ I VDRIF R+GA D++ G STF+ E
Sbjct: 621 GPNMAGKSTFMRQVALISLMAQMGSFVPADKALIPLVDRIFTRVGASDNLARGHSTFMVE 680
Query: 1094 LSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
+ E+A +L AT SLV+LDE+GRGTST DG +IA
Sbjct: 681 MMESAAILRGATARSLVILDEIGRGTSTFDGVSIA 715
>sp|Q88ME7|MUTS_PSEPK DNA mismatch repair protein MutS OS=Pseudomonas putida (strain
KT2440) GN=mutS PE=3 SV=1
Length = 857
Score = 230 bits (587), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 228/817 (27%), Positives = 362/817 (44%), Gaps = 141/817 (17%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQ------PHCGFPER 385
+Q+W+ K++H D+++F++MG FYE+F DA AK LD+ Q P CG P
Sbjct: 12 QQYWKLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQSIPMCGIPFH 71
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ + KL + G V++ EQ P KG V+R++ ++T GT+++ L
Sbjct: 72 SLEGYLAKLVKLGESVVICEQIGDPA------TSKGP----VERQVVRIITPGTVSDEAL 121
Query: 446 LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLS 505
L D N A +R FG+ V+D+ + + ++ + LL+
Sbjct: 122 LDERRD----------NLIAALLGDERLFGLAVLDITSGNFSVQEIKGWEN------LLA 165
Query: 506 ELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAE 565
EL E + P +L P+ L + P P WD ++R
Sbjct: 166 EL---ERLNPVELLIPDDWPRDLPAEKRPGARRRAP----WD-----------FDR---- 203
Query: 566 SLNKADSNVANSQAEGD--GLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDET 623
+ A + A D G C D + + A G L Y K++
Sbjct: 204 --DSARKALCQQFATKDLKGFGC------------DKLTLAIGAAGCLLTYAKETQRTAL 249
Query: 624 -LLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTA 682
LR + E L + ++LD + NLE+ N +G TL + ++ C TA
Sbjct: 250 PHLRSLRHERLDDT----------VILDGASRRNLELDINL-AGGRDNTLQSVIDRCQTA 298
Query: 683 FGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALE-FRKALSRLPDMERLLARLF 741
RLL WL RPL + +++ RQD++ R + + E + L + D+ER+LAR
Sbjct: 299 MASRLLSRWLNRPLRDLKVLQARQDSI---RCLLDSYRFEKLQPQLKEIGDIERILAR-- 353
Query: 742 ASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHIL 801
+ +A + L AL + A + L E+ L +
Sbjct: 354 -------------IGLRNARPRDLARLRDALGALPELQNAMTEL-------EAPHLARLA 393
Query: 802 TPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGV-DMDYDSACKKVKEIEASLTKHL 860
P + S+L+ +N +I GGV YD+ ++ I + + L
Sbjct: 394 AITGTYPELASLLER-------AIIDNPPAVIRDGGVLKAGYDNELDELLAISENAGQFL 446
Query: 861 ------KEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPN 914
++ R L + + Y + Y +E+P P DY R + KG R+ TP
Sbjct: 447 IDLEAREKARTGLANLKVGYNRVHG--YFIELPTKQAEQAPGDYIRRQTLKGAERFITPE 504
Query: 915 IKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFY 974
+K + A+S + K + L+ H + AA AELD L +LA
Sbjct: 505 LKAFEDKALSAKSRALAREKMLYDALLETLISHLAPLQDSAAALAELDVLSNLA------ 558
Query: 975 EGPTCRPVILD-SCSN--EEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFIL 1031
R + LD +C +EP + + HPV+ + + FV ND+ G + ++
Sbjct: 559 ----ERALNLDLNCPRFVDEPCLRIEQGRHPVV--EQVLTTPFVANDL--GLDNSTRMLI 610
Query: 1032 LTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFL 1091
+TGPNMGGKST +RQ L V+LA +G+ VPA E+S VDRIF R+G+ D + G+STF+
Sbjct: 611 ITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFM 670
Query: 1092 TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
E+SETA +L +AT SLV++DE+GRGTST DG ++A
Sbjct: 671 VEMSETANILHNATDRSLVLMDEVGRGTSTFDGLSLA 707
>sp|Q1H2P1|MUTS_METFK DNA mismatch repair protein MutS OS=Methylobacillus flagellatus
(strain KT / ATCC 51484 / DSM 6875) GN=mutS1 PE=3 SV=1
Length = 884
Score = 229 bits (585), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 222/817 (27%), Positives = 359/817 (43%), Gaps = 145/817 (17%)
Query: 332 KQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMK-----GEQPH-CGFPER 385
+Q+ K+++ D ++F++MG FYELF DA ++ L + K GE G P
Sbjct: 46 RQYLGIKAQYPDMLVFYRMGDFYELFHDDAEKASRLLGITLTKRGSSNGEPIRMAGVPYH 105
Query: 386 NFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL 445
+ KLA+ G V + EQ P K KG V+R++ ++T GTLT+ L
Sbjct: 106 AAEQYLAKLAKLGEAVAICEQVGDPA------KSKGP----VERQVTRILTPGTLTDAAL 155
Query: 446 LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLS 505
L D + L+A+ + G+ +++A+ R IL ++ L L L
Sbjct: 156 LDDTRD-NLLLAIAHG---------EGVLGLARINLASGRFILSEITPGL----LAQELE 201
Query: 506 ELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRITAE 565
+ P EI+ P + E+ R L P +D ++++ +
Sbjct: 202 RISPAEILYPDDFYHMALEQVKCPKKR------LAPWQ--FDLDSSI------------Q 241
Query: 566 SLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLL 625
+L K S + DG C + +++ + A G L Y+K +
Sbjct: 242 TLTKQFSTY-----DLDGFGC-----AHMLAA-------IMAAGALLDYVKHT------- 277
Query: 626 RFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGK 685
+ L ++ LDA NLE+ + R G+SS TLY+ LN VTA G
Sbjct: 278 --QRTSLPHIQSLMVEQGSQFIQLDAATRRNLEIDQTLR-GESSPTLYSLLNTTVTAMGA 334
Query: 686 RLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSE 745
RLLR+WL PL + I+ R AV L+ R L + D+ER+ AR+ A
Sbjct: 335 RLLRSWLHHPLQHQADIQARLQAVKVLQAQYDGL----RPLLRNVGDIERMAARV-ALKT 389
Query: 746 ANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHIL---- 801
A R+ L G Q +L +L +S LH +
Sbjct: 390 ARPRD---------------------LSGLRDSLQQLPALQRVLRPEDSALLHSLQQQLD 428
Query: 802 TPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMD-YDSACKKVKEIEASLTKHL 860
P L +++ +K + ++ GGV D +D+ +++ I+++ + L
Sbjct: 429 VPQAALDMLIAAIK-----------DEPAAVLREGGVIADGFDAELDELRAIQSNCGEFL 477
Query: 861 ------KEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPN 914
+ +R + + + Y ++ + +E+ + +VP +Y R + K RY TP
Sbjct: 478 LQFEAQERERSGISNLKVEYNSVHG--FYIEISRAQSENVPAEYRRRQTLKNVERYITPE 535
Query: 915 IKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDF- 973
+K ++ A + K + L+G W++ A A+LD L + A +D
Sbjct: 536 LKTFEDKVLSANERALAREKFLFDELLGNLQPALAAWQRNAEAVAQLDVLATFAERADVL 595
Query: 974 -YEGPT-CRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFIL 1031
Y P LD P + + L P F+ N +++ + +L
Sbjct: 596 KYVAPQFSSEAGLDIVDGRHPVV--EQLAQP-----------FIANSVSLSPYRQ--LLL 640
Query: 1032 LTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFL 1091
+TGPNMGGKST +RQ L V+LA G VPA+ I P+DRIF R+GA D + G+STF+
Sbjct: 641 ITGPNMGGKSTYMRQTALIVLLAHCGCFVPAKSARIGPIDRIFTRIGASDDLAGGRSTFM 700
Query: 1092 TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIA 1128
E++ETA +L +AT SLV+LDE+GRGTST DG ++A
Sbjct: 701 VEMTETANILHNATERSLVLLDEIGRGTSTFDGLSLA 737
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 440,307,369
Number of Sequences: 539616
Number of extensions: 20219635
Number of successful extensions: 162734
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 1156
Number of HSP's that attempted gapping in prelim test: 128709
Number of HSP's gapped (non-prelim): 23650
length of query: 1162
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1033
effective length of database: 121,958,995
effective search space: 125983641835
effective search space used: 125983641835
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)