Query 001077
Match_columns 1162
No_of_seqs 520 out of 2434
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 15:12:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001077.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001077hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0217 Mismatch repair ATPase 100.0 3E-180 7E-185 1589.7 49.0 985 98-1150 8-1024(1125)
2 TIGR01070 mutS1 DNA mismatch r 100.0 5E-142 1E-146 1335.8 79.6 711 327-1154 1-721 (840)
3 COG0249 MutS Mismatch repair A 100.0 4E-143 8E-148 1329.3 67.8 736 324-1160 3-749 (843)
4 PRK05399 DNA mismatch repair p 100.0 1E-139 2E-144 1322.7 79.3 722 324-1154 5-736 (854)
5 KOG0218 Mismatch repair MSH3 [ 100.0 5E-134 1E-138 1149.1 52.0 767 325-1151 160-956 (1070)
6 KOG0219 Mismatch repair ATPase 100.0 1.9E-90 4.2E-95 808.8 47.0 737 326-1156 11-776 (902)
7 KOG0220 Mismatch repair ATPase 100.0 3E-85 6.5E-90 753.6 40.8 638 451-1160 102-755 (867)
8 KOG0221 Mismatch repair ATPase 100.0 3.8E-74 8.2E-79 650.0 35.8 522 601-1156 193-732 (849)
9 PRK00409 recombination and DNA 100.0 1.4E-61 3.1E-66 605.7 45.8 433 674-1153 17-455 (782)
10 TIGR01069 mutS2 MutS2 family p 100.0 1.6E-54 3.4E-59 540.8 45.6 427 672-1154 15-451 (771)
11 PF00488 MutS_V: MutS domain V 100.0 5.1E-48 1.1E-52 422.1 15.9 169 978-1153 1-171 (235)
12 cd03286 ABC_MSH6_euk MutS6 hom 100.0 9.4E-41 2E-45 360.0 14.1 154 996-1152 2-157 (218)
13 COG1193 Mismatch repair ATPase 100.0 5.5E-39 1.2E-43 393.7 29.8 419 675-1154 16-444 (753)
14 cd03287 ABC_MSH3_euk MutS3 hom 100.0 2.8E-39 6E-44 349.5 14.1 157 994-1153 1-159 (222)
15 smart00533 MUTSd DNA-binding d 100.0 4.6E-36 1E-40 342.7 32.8 306 669-1006 1-307 (308)
16 cd03285 ABC_MSH2_euk MutS2 hom 100.0 1.5E-35 3.2E-40 321.9 14.5 154 996-1152 2-157 (222)
17 cd03281 ABC_MSH5_euk MutS5 hom 100.0 1.8E-35 3.9E-40 319.5 13.9 153 996-1152 2-158 (213)
18 cd03282 ABC_MSH4_euk MutS4 hom 100.0 5.1E-35 1.1E-39 313.3 13.4 153 996-1152 2-155 (204)
19 cd03284 ABC_MutS1 MutS1 homolo 100.0 2.9E-34 6.3E-39 310.7 13.0 155 996-1153 2-158 (216)
20 PF01624 MutS_I: MutS domain I 100.0 1.2E-31 2.5E-36 260.8 8.8 107 328-444 1-113 (113)
21 cd03280 ABC_MutS2 MutS2 homolo 100.0 4.9E-29 1.1E-33 267.4 14.0 153 996-1153 2-156 (200)
22 smart00534 MUTSac ATPase domai 100.0 9.7E-29 2.1E-33 261.8 12.4 125 1029-1153 1-127 (185)
23 cd03283 ABC_MutS-like MutS-lik 100.0 2.1E-28 4.6E-33 261.7 13.4 149 996-1153 2-153 (199)
24 cd03243 ABC_MutS_homologs The 100.0 2.8E-28 6.2E-33 261.9 14.3 154 996-1153 2-156 (202)
25 PF05192 MutS_III: MutS domain 99.9 8.6E-23 1.9E-27 219.0 21.6 91 651-742 1-91 (204)
26 cd03227 ABC_Class2 ABC-type Cl 99.9 1.3E-22 2.8E-27 210.5 12.5 135 996-1155 2-148 (162)
27 PF05188 MutS_II: MutS domain 99.4 8.5E-12 1.8E-16 125.2 13.9 130 453-621 1-130 (137)
28 PF05190 MutS_IV: MutS family 99.3 4.3E-11 9.4E-16 111.9 12.9 92 837-928 1-92 (92)
29 PF09465 LBR_tudor: Lamin-B re 99.1 8.6E-11 1.9E-15 96.0 5.7 48 105-154 7-54 (55)
30 KOG0219 Mismatch repair ATPase 98.5 1.4E-08 3.1E-13 122.3 -2.9 209 912-1132 543-759 (902)
31 cd00267 ABC_ATPase ABC (ATP-bi 98.4 1.1E-06 2.4E-11 90.6 11.2 119 1014-1150 15-142 (157)
32 cd03238 ABC_UvrA The excision 98.3 1.2E-06 2.5E-11 92.3 8.2 127 1027-1158 21-159 (176)
33 cd03278 ABC_SMC_barmotin Barmo 98.3 5.8E-06 1.3E-10 88.8 11.7 132 1029-1161 24-189 (197)
34 cd03222 ABC_RNaseL_inhibitor T 98.2 1.2E-05 2.6E-10 84.8 12.7 110 1027-1151 25-135 (177)
35 cd03216 ABC_Carb_Monos_I This 98.2 7.6E-06 1.7E-10 85.2 10.5 118 1027-1155 26-150 (163)
36 cd03230 ABC_DR_subfamily_A Thi 98.2 8E-06 1.7E-10 85.8 10.7 111 1027-1150 26-157 (173)
37 cd03214 ABC_Iron-Siderophores_ 98.1 7.8E-06 1.7E-10 86.5 9.5 119 1018-1150 19-160 (180)
38 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.1 1.7E-05 3.7E-10 80.8 11.5 110 1018-1150 20-129 (144)
39 cd03215 ABC_Carb_Monos_II This 98.1 1.2E-05 2.6E-10 85.2 10.8 119 1027-1156 26-173 (182)
40 cd03228 ABCC_MRP_Like The MRP 98.1 2.1E-05 4.6E-10 82.5 11.7 111 1027-1153 28-160 (171)
41 cd03239 ABC_SMC_head The struc 98.1 2.5E-05 5.3E-10 82.6 12.2 129 1029-1160 24-170 (178)
42 cd03247 ABCC_cytochrome_bd The 98.1 2.6E-05 5.7E-10 82.2 12.1 114 1027-1153 28-162 (178)
43 cd03232 ABC_PDR_domain2 The pl 98.1 1.3E-05 2.9E-10 85.6 9.8 113 1027-1149 33-169 (192)
44 cd03223 ABCD_peroxisomal_ALDP 98.1 2.4E-05 5.3E-10 81.6 11.0 117 1027-1158 27-158 (166)
45 KOG4675 Uncharacterized conser 98.0 2.1E-06 4.6E-11 93.0 2.3 61 98-158 153-221 (273)
46 cd03213 ABCG_EPDR ABCG transpo 98.0 2.6E-05 5.5E-10 83.6 10.3 112 1027-1149 35-172 (194)
47 cd03246 ABCC_Protease_Secretio 98.0 4.5E-05 9.8E-10 80.1 11.7 117 1027-1154 28-162 (173)
48 COG1121 ZnuC ABC-type Mn/Zn tr 98.0 2.2E-05 4.7E-10 86.4 9.1 45 1104-1148 155-199 (254)
49 cd03217 ABC_FeS_Assembly ABC-t 97.9 3.2E-05 6.9E-10 83.3 9.6 122 1027-1158 26-176 (200)
50 cd03229 ABC_Class3 This class 97.9 8.5E-05 1.8E-09 78.4 12.3 113 1027-1150 26-163 (178)
51 COG1131 CcmA ABC-type multidru 97.9 1.7E-05 3.7E-10 90.4 7.1 133 1014-1148 19-197 (293)
52 COG0396 sufC Cysteine desulfur 97.9 4.3E-05 9.3E-10 81.8 9.2 123 1027-1151 30-207 (251)
53 COG4555 NatA ABC-type Na+ tran 97.9 3E-05 6.4E-10 81.2 7.6 132 1018-1155 20-201 (245)
54 COG4152 ABC-type uncharacteriz 97.9 3.4E-05 7.3E-10 83.0 8.1 120 1014-1151 16-193 (300)
55 cd03268 ABC_BcrA_bacitracin_re 97.9 3.3E-05 7E-10 83.6 8.0 54 1103-1156 141-195 (208)
56 cd03244 ABCC_MRP_domain2 Domai 97.9 4.4E-05 9.5E-10 83.3 9.1 64 1087-1153 140-203 (221)
57 cd03279 ABC_sbcCD SbcCD and ot 97.8 4.3E-05 9.2E-10 83.2 8.3 136 1017-1152 18-197 (213)
58 TIGR01166 cbiO cobalt transpor 97.8 3.7E-05 8.1E-10 81.9 7.1 47 1104-1150 143-189 (190)
59 TIGR01188 drrA daunorubicin re 97.8 3.7E-05 8.1E-10 88.2 7.6 47 1104-1150 140-186 (302)
60 PRK13543 cytochrome c biogenes 97.8 0.00013 2.9E-09 79.3 11.0 57 1103-1159 152-209 (214)
61 COG0411 LivG ABC-type branched 97.8 3E-05 6.6E-10 83.8 5.5 127 1014-1151 18-213 (250)
62 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.8 6.9E-05 1.5E-09 81.6 8.4 54 1104-1157 156-210 (218)
63 TIGR03608 L_ocin_972_ABC putat 97.8 6.1E-05 1.3E-09 81.2 7.9 50 1104-1153 150-199 (206)
64 cd03269 ABC_putative_ATPase Th 97.7 9.1E-05 2E-09 80.2 9.1 47 1104-1150 144-190 (210)
65 cd03292 ABC_FtsE_transporter F 97.7 6.7E-05 1.4E-09 81.4 7.9 47 1104-1150 152-198 (214)
66 PRK13541 cytochrome c biogenes 97.7 9.3E-05 2E-09 79.3 8.7 47 1104-1150 139-185 (195)
67 TIGR01189 ccmA heme ABC export 97.7 9.6E-05 2.1E-09 79.4 8.6 46 1103-1148 142-187 (198)
68 cd03250 ABCC_MRP_domain1 Domai 97.7 0.00022 4.8E-09 76.9 11.2 122 1027-1151 31-191 (204)
69 PRK15177 Vi polysaccharide exp 97.7 0.00022 4.8E-09 77.6 11.2 121 1027-1151 13-166 (213)
70 PRK03695 vitamin B12-transport 97.7 0.0001 2.2E-09 82.1 8.7 129 1027-1156 22-202 (248)
71 TIGR01978 sufC FeS assembly AT 97.7 8.8E-05 1.9E-09 82.2 8.1 47 1104-1150 160-206 (243)
72 PRK13536 nodulation factor exp 97.7 0.00011 2.3E-09 85.7 9.0 132 1015-1150 56-234 (340)
73 cd03274 ABC_SMC4_euk Eukaryoti 97.7 0.00039 8.4E-09 75.7 12.8 69 1084-1153 125-195 (212)
74 TIGR02673 FtsE cell division A 97.7 8.4E-05 1.8E-09 80.7 7.7 46 1104-1149 153-198 (214)
75 PRK10584 putative ABC transpor 97.7 9.5E-05 2.1E-09 81.2 8.1 49 1104-1152 162-211 (228)
76 cd03258 ABC_MetN_methionine_tr 97.7 0.00013 2.9E-09 80.3 9.1 54 1103-1156 155-210 (233)
77 cd03245 ABCC_bacteriocin_expor 97.7 0.00012 2.5E-09 79.9 8.3 53 1104-1157 156-208 (220)
78 PRK09544 znuC high-affinity zi 97.7 0.00013 2.8E-09 81.5 8.9 47 1104-1150 136-183 (251)
79 PRK11264 putative amino-acid A 97.6 0.00012 2.5E-09 81.6 8.3 47 1104-1150 160-206 (250)
80 cd03237 ABC_RNaseL_inhibitor_d 97.6 0.00017 3.7E-09 80.2 9.5 53 1103-1155 130-184 (246)
81 COG4133 CcmA ABC-type transpor 97.6 0.00023 4.9E-09 74.2 9.5 40 1013-1063 17-56 (209)
82 cd03253 ABCC_ATM1_transporter 97.6 0.00025 5.5E-09 78.2 10.8 51 1104-1155 153-203 (236)
83 cd03272 ABC_SMC3_euk Eukaryoti 97.6 0.00041 8.9E-09 76.8 12.3 64 1090-1154 162-227 (243)
84 TIGR01288 nodI ATP-binding ABC 97.6 9.7E-05 2.1E-09 84.8 7.4 46 1104-1149 151-196 (303)
85 cd03293 ABC_NrtD_SsuB_transpor 97.6 0.00026 5.6E-09 77.3 10.5 53 1104-1156 147-201 (220)
86 cd03262 ABC_HisP_GlnQ_permease 97.6 0.00015 3.3E-09 78.6 8.5 47 1104-1150 151-197 (213)
87 cd03226 ABC_cobalt_CbiO_domain 97.6 0.00012 2.6E-09 79.0 7.7 121 1027-1150 26-188 (205)
88 COG1119 ModF ABC-type molybden 97.6 0.00036 7.7E-09 75.7 11.0 19 1030-1048 60-78 (257)
89 TIGR00960 3a0501s02 Type II (G 97.6 0.00016 3.5E-09 78.6 8.7 52 1104-1155 154-206 (216)
90 cd03265 ABC_DrrA DrrA is the A 97.6 0.00011 2.5E-09 80.1 7.4 46 1104-1149 147-193 (220)
91 cd03254 ABCC_Glucan_exporter_l 97.6 0.00029 6.3E-09 77.3 10.7 64 1087-1153 140-203 (229)
92 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.6 0.00031 6.8E-09 77.0 10.8 53 1104-1156 158-211 (224)
93 PRK13540 cytochrome c biogenes 97.6 0.00018 3.9E-09 77.4 8.4 55 1103-1157 142-196 (200)
94 cd03236 ABC_RNaseL_inhibitor_d 97.6 0.00019 4E-09 80.4 8.8 48 1104-1151 155-202 (255)
95 cd03235 ABC_Metallic_Cations A 97.6 0.00014 3.1E-09 78.8 7.6 52 1104-1155 148-200 (213)
96 cd03270 ABC_UvrA_I The excisio 97.6 0.0007 1.5E-08 74.4 13.1 48 1108-1155 159-206 (226)
97 PRK11124 artP arginine transpo 97.6 0.00028 6.1E-09 78.2 10.0 47 1104-1150 157-203 (242)
98 PRK11300 livG leucine/isoleuci 97.6 0.00018 3.9E-09 80.3 8.5 48 1104-1151 169-217 (255)
99 TIGR02211 LolD_lipo_ex lipopro 97.6 0.0003 6.6E-09 76.7 10.1 48 1104-1151 157-205 (221)
100 cd03240 ABC_Rad50 The catalyti 97.6 0.00074 1.6E-08 73.0 12.9 55 1104-1158 137-193 (204)
101 PRK13538 cytochrome c biogenes 97.6 0.0001 2.2E-09 79.6 6.0 47 1104-1150 145-191 (204)
102 PRK13635 cbiO cobalt transport 97.6 0.00026 5.7E-09 80.3 9.6 50 1104-1153 156-206 (279)
103 PRK13647 cbiO cobalt transport 97.6 0.00014 3E-09 82.4 7.3 48 1104-1151 154-201 (274)
104 TIGR00968 3a0106s01 sulfate AB 97.6 0.00018 3.9E-09 79.6 8.0 54 1104-1157 146-201 (237)
105 PRK13546 teichoic acids export 97.6 0.00026 5.6E-09 79.7 9.4 46 1104-1149 159-204 (264)
106 cd03259 ABC_Carb_Solutes_like 97.6 0.0004 8.8E-09 75.3 10.6 46 1104-1149 146-192 (213)
107 cd03252 ABCC_Hemolysin The ABC 97.6 0.00045 9.9E-09 76.2 11.2 62 1088-1152 140-201 (237)
108 TIGR01184 ntrCD nitrate transp 97.5 0.00046 1E-08 76.0 11.2 52 1104-1155 130-183 (230)
109 TIGR03740 galliderm_ABC gallid 97.5 0.0003 6.4E-09 77.0 9.6 47 1104-1150 140-186 (223)
110 cd03266 ABC_NatA_sodium_export 97.5 0.00018 3.8E-09 78.4 7.8 52 1104-1155 152-204 (218)
111 cd03225 ABC_cobalt_CbiO_domain 97.5 0.0002 4.4E-09 77.5 8.2 46 1104-1149 150-195 (211)
112 TIGR02315 ABC_phnC phosphonate 97.5 0.00015 3.2E-09 80.4 7.2 47 1104-1150 161-208 (243)
113 PRK13539 cytochrome c biogenes 97.5 0.0005 1.1E-08 74.4 11.2 46 1104-1149 143-188 (207)
114 TIGR02324 CP_lyasePhnL phospho 97.5 0.00021 4.4E-09 78.3 8.2 58 1104-1161 165-223 (224)
115 PRK13652 cbiO cobalt transport 97.5 0.00029 6.3E-09 79.8 9.7 53 1104-1156 153-207 (277)
116 PRK10908 cell division protein 97.5 0.00019 4.2E-09 78.4 7.9 47 1104-1150 153-199 (222)
117 PRK14265 phosphate ABC transpo 97.5 0.00033 7.1E-09 79.3 9.9 45 1104-1149 177-221 (274)
118 cd03298 ABC_ThiQ_thiamine_tran 97.5 0.00058 1.3E-08 74.0 11.5 54 1104-1157 144-199 (211)
119 PRK10771 thiQ thiamine transpo 97.5 0.00053 1.2E-08 75.5 11.2 52 1104-1155 145-198 (232)
120 cd03261 ABC_Org_Solvent_Resist 97.5 0.00025 5.5E-09 78.2 8.7 46 1104-1149 152-198 (235)
121 TIGR02982 heterocyst_DevA ABC 97.5 0.00021 4.5E-09 78.1 7.9 56 1104-1159 157-213 (220)
122 PRK10247 putative ABC transpor 97.5 0.00021 4.7E-09 78.3 8.0 49 1104-1152 153-202 (225)
123 TIGR03522 GldA_ABC_ATP gliding 97.5 0.00032 7E-09 80.4 9.7 137 1015-1156 17-201 (301)
124 PRK13649 cbiO cobalt transport 97.5 0.00025 5.5E-09 80.4 8.7 53 1104-1156 161-214 (280)
125 cd03294 ABC_Pro_Gly_Bertaine T 97.5 0.00019 4E-09 81.1 7.5 52 1104-1155 176-229 (269)
126 PRK13537 nodulation ABC transp 97.5 0.00027 5.8E-09 81.3 8.9 132 1015-1150 22-200 (306)
127 cd03233 ABC_PDR_domain1 The pl 97.5 0.00034 7.3E-09 75.5 9.2 120 1027-1156 33-189 (202)
128 TIGR01277 thiQ thiamine ABC tr 97.5 0.0002 4.3E-09 77.8 7.4 53 1104-1156 144-198 (213)
129 PRK13640 cbiO cobalt transport 97.5 0.00035 7.6E-09 79.4 9.7 52 1104-1155 159-211 (282)
130 COG0488 Uup ATPase components 97.5 0.0031 6.7E-08 77.3 18.4 114 1029-1148 350-496 (530)
131 PRK10895 lipopolysaccharide AB 97.5 0.00027 5.9E-09 78.3 8.6 52 1104-1155 153-205 (241)
132 cd03251 ABCC_MsbA MsbA is an e 97.5 0.0006 1.3E-08 75.1 11.2 49 1104-1153 154-202 (234)
133 TIGR03864 PQQ_ABC_ATP ABC tran 97.5 0.00028 6.2E-09 77.9 8.6 52 1104-1155 148-200 (236)
134 cd03256 ABC_PhnC_transporter A 97.5 0.00026 5.6E-09 78.3 8.3 48 1104-1151 160-208 (241)
135 cd03263 ABC_subfamily_A The AB 97.5 0.00048 1E-08 75.1 10.3 47 1103-1150 148-194 (220)
136 PRK13632 cbiO cobalt transport 97.5 0.00024 5.3E-09 80.2 8.2 50 1104-1153 158-208 (271)
137 PRK09493 glnQ glutamine ABC tr 97.5 0.00028 6.1E-09 78.1 8.5 48 1104-1151 152-199 (240)
138 cd03219 ABC_Mj1267_LivG_branch 97.5 0.00023 5E-09 78.5 7.6 47 1104-1150 159-205 (236)
139 KOG0062 ATPase component of AB 97.5 0.0001 2.2E-09 86.6 4.9 110 1029-1146 108-253 (582)
140 PRK13644 cbiO cobalt transport 97.5 0.00027 5.8E-09 80.0 8.2 52 1104-1155 152-203 (274)
141 cd03267 ABC_NatA_like Similar 97.5 0.00018 4E-09 79.5 6.7 52 1104-1155 169-222 (236)
142 cd03231 ABC_CcmA_heme_exporter 97.5 0.00033 7.1E-09 75.5 8.3 45 1104-1148 141-185 (201)
143 PRK09984 phosphonate/organopho 97.5 0.00031 6.7E-09 78.9 8.4 53 1104-1156 168-222 (262)
144 cd03301 ABC_MalK_N The N-termi 97.5 0.00049 1.1E-08 74.6 9.7 46 1104-1149 146-192 (213)
145 PRK11248 tauB taurine transpor 97.5 0.00064 1.4E-08 76.1 10.8 46 1104-1149 144-190 (255)
146 PRK13637 cbiO cobalt transport 97.4 0.00026 5.6E-09 80.7 7.8 121 1027-1150 33-207 (287)
147 PRK13548 hmuV hemin importer A 97.4 0.00078 1.7E-08 75.5 11.5 55 1096-1150 144-203 (258)
148 TIGR03005 ectoine_ehuA ectoine 97.4 0.0003 6.5E-09 78.5 8.1 47 1104-1150 162-209 (252)
149 cd03218 ABC_YhbG The ABC trans 97.4 0.00036 7.7E-09 76.8 8.6 52 1104-1155 149-201 (232)
150 PRK11247 ssuB aliphatic sulfon 97.4 0.00026 5.5E-09 79.4 7.5 53 1104-1156 149-203 (257)
151 PRK13636 cbiO cobalt transport 97.4 0.00039 8.4E-09 79.1 9.0 48 1104-1151 157-205 (283)
152 TIGR02770 nickel_nikD nickel i 97.4 0.00027 5.8E-09 77.8 7.4 46 1104-1149 141-187 (230)
153 cd03296 ABC_CysA_sulfate_impor 97.4 0.00048 1E-08 76.2 9.4 46 1104-1149 152-198 (239)
154 PRK13641 cbiO cobalt transport 97.4 0.0003 6.5E-09 80.2 8.0 52 1104-1155 161-213 (287)
155 TIGR03411 urea_trans_UrtD urea 97.4 0.00039 8.5E-09 77.0 8.6 46 1104-1150 159-204 (242)
156 PRK14268 phosphate ABC transpo 97.4 0.0004 8.7E-09 77.8 8.8 46 1104-1150 170-215 (258)
157 TIGR03410 urea_trans_UrtE urea 97.4 0.00023 5.1E-09 78.2 6.8 46 1104-1149 147-193 (230)
158 PRK13643 cbiO cobalt transport 97.4 0.00042 9.2E-09 79.0 9.0 47 1104-1150 160-206 (288)
159 PRK10419 nikE nickel transport 97.4 0.00068 1.5E-08 76.5 10.5 47 1104-1150 167-214 (268)
160 PRK13648 cbiO cobalt transport 97.4 0.00034 7.4E-09 78.9 8.0 50 1104-1153 158-208 (269)
161 PRK13545 tagH teichoic acids e 97.4 0.0004 8.6E-09 84.1 8.9 46 1104-1149 159-204 (549)
162 PRK14261 phosphate ABC transpo 97.4 0.00052 1.1E-08 76.6 9.3 46 1104-1150 165-210 (253)
163 cd03275 ABC_SMC1_euk Eukaryoti 97.4 0.00047 1E-08 76.8 8.9 61 1093-1153 162-224 (247)
164 PRK11614 livF leucine/isoleuci 97.4 0.00024 5.2E-09 78.5 6.4 53 1104-1156 153-206 (237)
165 PRK14264 phosphate ABC transpo 97.4 0.00063 1.4E-08 78.3 10.1 46 1104-1150 216-261 (305)
166 cd03264 ABC_drug_resistance_li 97.4 0.00032 6.8E-09 76.1 7.2 46 1104-1150 146-191 (211)
167 cd03248 ABCC_TAP TAP, the Tran 97.4 0.0007 1.5E-08 74.2 10.0 49 1104-1153 166-214 (226)
168 PRK11231 fecE iron-dicitrate t 97.4 0.00088 1.9E-08 74.9 11.0 46 1104-1149 154-199 (255)
169 cd03369 ABCC_NFT1 Domain 2 of 97.4 0.00056 1.2E-08 73.9 9.1 121 1027-1151 34-187 (207)
170 PRK14275 phosphate ABC transpo 97.4 0.00044 9.5E-09 78.8 8.5 46 1104-1150 198-243 (286)
171 PRK11629 lolD lipoprotein tran 97.4 0.00041 8.8E-09 76.5 8.0 47 1104-1150 161-208 (233)
172 PRK11000 maltose/maltodextrin 97.4 0.00039 8.5E-09 82.0 8.3 52 1104-1155 149-202 (369)
173 PRK10575 iron-hydroxamate tran 97.4 0.00021 4.5E-09 80.5 5.8 47 1104-1150 163-210 (265)
174 PRK14262 phosphate ABC transpo 97.4 0.00058 1.3E-08 76.1 9.3 52 1104-1156 162-214 (250)
175 cd03224 ABC_TM1139_LivF_branch 97.4 0.0003 6.5E-09 76.8 6.8 46 1104-1149 148-193 (222)
176 CHL00131 ycf16 sulfate ABC tra 97.4 0.00036 7.7E-09 77.8 7.6 47 1104-1150 167-213 (252)
177 PRK15056 manganese/iron transp 97.4 0.00045 9.7E-09 78.1 8.4 46 1104-1149 158-203 (272)
178 PRK13639 cbiO cobalt transport 97.4 0.00052 1.1E-08 77.7 8.9 48 1104-1151 153-200 (275)
179 cd03234 ABCG_White The White s 97.4 0.00034 7.4E-09 76.7 7.2 54 1104-1157 159-214 (226)
180 PRK13633 cobalt transporter AT 97.4 0.00043 9.4E-09 78.6 8.3 50 1104-1153 160-210 (280)
181 TIGR03873 F420-0_ABC_ATP propo 97.4 0.00042 9E-09 77.6 8.0 54 1104-1157 153-207 (256)
182 cd03295 ABC_OpuCA_Osmoprotecti 97.4 0.00056 1.2E-08 75.8 8.8 52 1104-1155 151-204 (242)
183 cd03277 ABC_SMC5_euk Eukaryoti 97.4 0.0015 3.2E-08 71.2 11.9 120 1028-1148 24-192 (213)
184 PRK14269 phosphate ABC transpo 97.3 0.00078 1.7E-08 74.9 9.9 45 1104-1149 158-202 (246)
185 PRK14274 phosphate ABC transpo 97.3 0.00063 1.4E-08 76.3 9.2 45 1104-1149 171-215 (259)
186 TIGR03258 PhnT 2-aminoethylpho 97.3 0.00065 1.4E-08 79.8 9.5 47 1104-1150 153-201 (362)
187 PRK10619 histidine/lysine/argi 97.3 0.0011 2.3E-08 74.4 10.8 47 1104-1150 168-214 (257)
188 PRK10744 pstB phosphate transp 97.3 0.00063 1.4E-08 76.3 9.0 46 1104-1150 172-217 (260)
189 PRK13638 cbiO cobalt transport 97.3 0.00038 8.2E-09 78.6 7.2 47 1104-1150 152-198 (271)
190 PRK11831 putative ABC transpor 97.3 0.00043 9.2E-09 78.1 7.5 45 1104-1148 159-204 (269)
191 PRK13634 cbiO cobalt transport 97.3 0.00069 1.5E-08 77.3 9.3 62 1087-1150 146-208 (290)
192 TIGR02769 nickel_nikE nickel i 97.3 0.00053 1.1E-08 77.2 8.3 48 1104-1151 166-214 (265)
193 PRK14235 phosphate transporter 97.3 0.00096 2.1E-08 75.2 10.4 46 1104-1150 179-224 (267)
194 PRK14240 phosphate transporter 97.3 0.00068 1.5E-08 75.5 9.0 45 1104-1149 162-206 (250)
195 PRK14237 phosphate transporter 97.3 0.00053 1.1E-08 77.3 8.2 46 1104-1150 179-224 (267)
196 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.3 0.00083 1.8E-08 74.2 9.6 49 1104-1153 155-203 (238)
197 PRK13547 hmuV hemin importer A 97.3 0.00046 1E-08 78.0 7.7 46 1105-1150 171-217 (272)
198 PRK14259 phosphate ABC transpo 97.3 0.00078 1.7E-08 76.0 9.4 45 1104-1149 170-214 (269)
199 TIGR03771 anch_rpt_ABC anchore 97.3 0.0011 2.3E-08 72.7 10.3 46 1104-1149 129-174 (223)
200 COG1122 CbiO ABC-type cobalt t 97.3 0.00094 2E-08 73.6 9.6 47 1104-1150 154-201 (235)
201 PRK13642 cbiO cobalt transport 97.3 0.00056 1.2E-08 77.5 8.1 53 1104-1156 156-209 (277)
202 PRK15112 antimicrobial peptide 97.3 0.00055 1.2E-08 77.2 7.9 47 1104-1150 165-212 (267)
203 PRK14242 phosphate transporter 97.3 0.00093 2E-08 74.6 9.6 46 1104-1150 165-210 (253)
204 PRK14245 phosphate ABC transpo 97.3 0.00087 1.9E-08 74.7 9.3 46 1104-1150 162-207 (250)
205 PRK11144 modC molybdate transp 97.3 0.00096 2.1E-08 78.3 10.0 53 1104-1156 144-198 (352)
206 cd03260 ABC_PstB_phosphate_tra 97.3 0.00085 1.9E-08 73.6 9.1 51 1104-1155 157-208 (227)
207 cd03257 ABC_NikE_OppD_transpor 97.3 0.00061 1.3E-08 74.6 7.9 47 1104-1150 161-208 (228)
208 PRK09580 sufC cysteine desulfu 97.3 0.0015 3.3E-08 72.5 11.1 62 1087-1150 146-207 (248)
209 PRK14244 phosphate ABC transpo 97.3 0.0011 2.3E-08 74.0 9.9 45 1104-1149 165-209 (251)
210 PRK14253 phosphate ABC transpo 97.3 0.00089 1.9E-08 74.6 9.1 46 1104-1150 161-206 (249)
211 PRK13650 cbiO cobalt transport 97.3 0.00065 1.4E-08 77.1 8.0 50 1104-1153 156-206 (279)
212 cd03276 ABC_SMC6_euk Eukaryoti 97.2 0.0014 3E-08 70.6 10.0 54 1097-1150 120-178 (198)
213 PRK14256 phosphate ABC transpo 97.2 0.0007 1.5E-08 75.6 8.0 46 1104-1150 164-209 (252)
214 PRK10253 iron-enterobactin tra 97.2 0.00067 1.5E-08 76.4 7.9 52 1104-1155 159-212 (265)
215 cd03300 ABC_PotA_N PotA is an 97.2 0.0015 3.3E-08 72.0 10.4 46 1104-1149 146-192 (232)
216 cd03297 ABC_ModC_molybdenum_tr 97.2 0.00058 1.3E-08 74.2 7.0 46 1104-1149 147-193 (214)
217 PRK14254 phosphate ABC transpo 97.2 0.00068 1.5E-08 77.2 7.8 46 1104-1150 196-241 (285)
218 PRK14273 phosphate ABC transpo 97.2 0.00076 1.6E-08 75.3 8.0 46 1104-1150 166-211 (254)
219 TIGR02142 modC_ABC molybdenum 97.2 0.00071 1.5E-08 79.5 8.1 46 1104-1149 147-193 (354)
220 TIGR02323 CP_lyasePhnK phospho 97.2 0.00064 1.4E-08 75.9 7.4 47 1104-1150 164-211 (253)
221 PRK10636 putative ABC transpor 97.2 0.00064 1.4E-08 85.9 8.1 43 1104-1149 165-207 (638)
222 PRK14241 phosphate transporter 97.2 0.00074 1.6E-08 75.6 7.6 45 1105-1150 165-209 (258)
223 cd03291 ABCC_CFTR1 The CFTR su 97.2 0.0021 4.5E-08 73.1 11.2 51 1104-1155 175-226 (282)
224 PRK09452 potA putrescine/sperm 97.2 0.0013 2.8E-08 77.7 9.8 47 1104-1150 160-207 (375)
225 PRK15439 autoinducer 2 ABC tra 97.2 0.00082 1.8E-08 82.9 8.5 46 1104-1149 156-201 (510)
226 COG0410 LivF ABC-type branched 97.2 0.0021 4.6E-08 69.3 10.4 113 1027-1150 29-199 (237)
227 PRK14267 phosphate ABC transpo 97.2 0.0011 2.4E-08 74.0 8.7 46 1104-1150 165-210 (253)
228 PRK13651 cobalt transporter AT 97.2 0.00089 1.9E-08 77.0 8.1 52 1104-1155 181-233 (305)
229 cd03290 ABCC_SUR1_N The SUR do 97.2 0.0029 6.3E-08 68.9 11.8 50 1104-1153 156-207 (218)
230 PRK14247 phosphate ABC transpo 97.2 0.00092 2E-08 74.5 7.9 46 1104-1150 162-207 (250)
231 PRK10418 nikD nickel transport 97.2 0.00077 1.7E-08 75.4 7.3 47 1104-1150 156-203 (254)
232 PRK11153 metN DL-methionine tr 97.2 0.00061 1.3E-08 79.6 6.7 47 1104-1150 156-203 (343)
233 PRK11650 ugpC glycerol-3-phosp 97.2 0.0015 3.3E-08 76.6 10.0 46 1104-1149 150-196 (356)
234 PRK11432 fbpC ferric transport 97.2 0.0017 3.6E-08 76.1 10.3 48 1104-1151 152-200 (351)
235 PRK14250 phosphate ABC transpo 97.2 0.00084 1.8E-08 74.4 7.5 47 1104-1150 147-194 (241)
236 TIGR00972 3a0107s01c2 phosphat 97.2 0.0011 2.5E-08 73.6 8.5 52 1104-1156 160-212 (247)
237 PRK13695 putative NTPase; Prov 97.2 0.0027 5.8E-08 66.7 10.9 116 1030-1149 3-137 (174)
238 PRK14251 phosphate ABC transpo 97.2 0.0011 2.5E-08 73.8 8.5 46 1104-1150 163-208 (251)
239 PRK14249 phosphate ABC transpo 97.1 0.0012 2.6E-08 73.6 8.6 46 1104-1150 163-208 (251)
240 TIGR03265 PhnT2 putative 2-ami 97.1 0.0015 3.3E-08 76.5 9.7 52 1104-1155 150-203 (353)
241 PRK11819 putative ABC transpor 97.1 0.0013 2.7E-08 82.1 9.5 43 1104-1149 179-221 (556)
242 smart00333 TUDOR Tudor domain. 97.1 0.00053 1.2E-08 58.1 4.2 43 105-149 4-47 (57)
243 PRK14248 phosphate ABC transpo 97.1 0.0013 2.8E-08 74.1 8.7 45 1104-1149 180-224 (268)
244 PRK10851 sulfate/thiosulfate t 97.1 0.0018 3.9E-08 75.9 10.1 46 1104-1149 152-198 (353)
245 PRK15439 autoinducer 2 ABC tra 97.1 0.0011 2.3E-08 81.9 8.6 53 1095-1149 412-464 (510)
246 cd03273 ABC_SMC2_euk Eukaryoti 97.1 0.0019 4.2E-08 72.0 9.9 73 1088-1161 168-242 (251)
247 PRK15064 ABC transporter ATP-b 97.1 0.0011 2.4E-08 82.2 8.7 58 1087-1149 156-213 (530)
248 PRK09536 btuD corrinoid ABC tr 97.1 0.0011 2.4E-08 78.8 8.3 53 1097-1151 150-202 (402)
249 PRK14246 phosphate ABC transpo 97.1 0.00065 1.4E-08 76.2 6.0 45 1104-1149 169-213 (257)
250 PRK13631 cbiO cobalt transport 97.1 0.0015 3.2E-08 75.7 9.0 53 1104-1156 192-245 (320)
251 PRK14271 phosphate ABC transpo 97.1 0.0019 4E-08 73.3 9.6 46 1104-1150 179-224 (276)
252 cd03299 ABC_ModC_like Archeal 97.1 0.0025 5.4E-08 70.4 10.4 53 1104-1156 145-199 (235)
253 PRK11147 ABC transporter ATPas 97.1 0.0011 2.4E-08 84.0 8.5 43 1104-1149 172-214 (635)
254 PRK11701 phnK phosphonate C-P 97.1 0.00084 1.8E-08 75.2 6.7 48 1104-1151 167-215 (258)
255 PRK14263 phosphate ABC transpo 97.1 0.0017 3.7E-08 73.0 9.2 52 1104-1156 165-217 (261)
256 PRK14243 phosphate transporter 97.1 0.0015 3.3E-08 73.5 8.7 45 1104-1149 167-211 (264)
257 TIGR01186 proV glycine betaine 97.1 0.0013 2.8E-08 77.2 8.4 47 1104-1150 145-192 (363)
258 PRK10938 putative molybdenum t 97.1 0.0011 2.5E-08 81.2 8.3 46 1104-1149 151-196 (490)
259 smart00382 AAA ATPases associa 97.1 0.00072 1.5E-08 66.4 5.4 24 1028-1051 3-26 (148)
260 PRK14266 phosphate ABC transpo 97.1 0.0018 3.9E-08 72.1 9.2 45 1104-1149 162-206 (250)
261 cd03271 ABC_UvrA_II The excisi 97.1 0.002 4.2E-08 72.3 9.4 68 1091-1158 174-242 (261)
262 PRK14252 phosphate ABC transpo 97.1 0.0014 3E-08 73.8 8.2 45 1104-1149 177-221 (265)
263 PRK11607 potG putrescine trans 97.1 0.0019 4.2E-08 76.3 9.6 54 1104-1157 165-220 (377)
264 PRK10070 glycine betaine trans 97.1 0.00098 2.1E-08 79.2 7.1 47 1104-1150 180-227 (400)
265 cd03289 ABCC_CFTR2 The CFTR su 97.0 0.0027 5.8E-08 71.9 10.3 122 1027-1151 30-200 (275)
266 PRK14239 phosphate transporter 97.0 0.0018 3.8E-08 72.3 8.6 51 1104-1155 164-215 (252)
267 PRK14255 phosphate ABC transpo 97.0 0.0013 2.9E-08 73.3 7.4 46 1104-1150 164-209 (252)
268 TIGR03415 ABC_choXWV_ATP choli 97.0 0.002 4.4E-08 76.1 9.2 47 1104-1150 180-227 (382)
269 PRK13409 putative ATPase RIL; 97.0 0.0015 3.2E-08 81.8 8.5 60 1087-1149 213-272 (590)
270 PRK13549 xylose transporter AT 97.0 0.00085 1.8E-08 82.7 6.4 47 1104-1150 159-205 (506)
271 TIGR02314 ABC_MetN D-methionin 97.0 0.003 6.5E-08 73.7 10.4 47 1104-1150 156-203 (343)
272 PRK13646 cbiO cobalt transport 97.0 0.0014 3E-08 74.7 7.6 68 1087-1156 146-215 (286)
273 TIGR03719 ABC_ABC_ChvD ATP-bin 97.0 0.002 4.3E-08 80.3 9.5 43 1104-1149 177-219 (552)
274 PRK14236 phosphate transporter 97.0 0.0018 3.8E-08 73.3 8.3 46 1104-1150 184-229 (272)
275 PRK10636 putative ABC transpor 97.0 0.027 5.8E-07 71.5 19.6 43 1104-1149 446-488 (638)
276 cd03288 ABCC_SUR2 The SUR doma 97.0 0.0032 7E-08 70.5 10.2 48 1104-1152 172-219 (257)
277 PRK14272 phosphate ABC transpo 97.0 0.0021 4.5E-08 71.7 8.6 46 1104-1150 164-209 (252)
278 COG1120 FepC ABC-type cobalami 97.0 0.0019 4.1E-08 71.7 8.0 134 1014-1158 16-209 (258)
279 PRK14270 phosphate ABC transpo 97.0 0.0028 6E-08 70.7 9.5 46 1104-1150 163-208 (251)
280 PRK11288 araG L-arabinose tran 97.0 0.003 6.6E-08 77.7 10.6 46 1104-1149 412-457 (501)
281 COG1129 MglA ABC-type sugar tr 97.0 0.0032 7E-08 75.6 10.3 112 1027-1148 34-205 (500)
282 COG1134 TagH ABC-type polysacc 97.0 0.0029 6.2E-08 68.9 8.9 124 1014-1148 41-207 (249)
283 TIGR01192 chvA glucan exporter 97.0 0.02 4.3E-07 72.0 17.9 47 1104-1151 487-533 (585)
284 TIGR01257 rim_protein retinal- 97.0 0.0013 2.9E-08 91.0 7.9 52 1104-1155 2086-2138(2272)
285 PRK09183 transposase/IS protei 97.0 0.0029 6.2E-08 71.0 9.4 102 1028-1147 103-205 (259)
286 cd04508 TUDOR Tudor domains ar 97.0 0.0011 2.3E-08 54.2 4.4 42 107-149 1-43 (48)
287 TIGR02633 xylG D-xylose ABC tr 96.9 0.0021 4.5E-08 79.2 8.8 46 1104-1149 419-464 (500)
288 PRK09700 D-allose transporter 96.9 0.0013 2.8E-08 81.2 7.0 46 1104-1149 161-206 (510)
289 PRK10762 D-ribose transporter 96.9 0.0012 2.5E-08 81.4 6.5 46 1104-1149 157-202 (501)
290 PRK09700 D-allose transporter 96.9 0.0033 7.2E-08 77.6 10.5 46 1104-1149 425-470 (510)
291 PRK11147 ABC transporter ATPas 96.9 0.0031 6.7E-08 79.9 10.4 51 1104-1157 456-507 (635)
292 PRK14260 phosphate ABC transpo 96.9 0.0036 7.8E-08 70.2 9.9 46 1104-1150 166-211 (259)
293 TIGR03719 ABC_ABC_ChvD ATP-bin 96.9 0.003 6.6E-08 78.7 10.1 43 1104-1149 459-501 (552)
294 PRK13409 putative ATPase RIL; 96.9 0.0025 5.5E-08 79.7 9.4 47 1104-1150 469-516 (590)
295 PRK13645 cbiO cobalt transport 96.9 0.0011 2.3E-08 75.8 5.4 46 1104-1149 166-212 (289)
296 PLN03211 ABC transporter G-25; 96.9 0.0018 3.9E-08 82.0 7.9 46 1104-1149 222-267 (659)
297 PRK13549 xylose transporter AT 96.9 0.0035 7.6E-08 77.3 10.2 52 1104-1155 421-473 (506)
298 PRK10938 putative molybdenum t 96.9 0.00096 2.1E-08 81.9 5.1 48 1104-1151 417-465 (490)
299 smart00743 Agenet Tudor-like d 96.9 0.0015 3.2E-08 56.4 4.8 36 105-141 4-39 (61)
300 TIGR03269 met_CoM_red_A2 methy 96.9 0.0031 6.7E-08 78.0 9.5 46 1104-1149 443-489 (520)
301 cd00009 AAA The AAA+ (ATPases 96.8 0.0052 1.1E-07 60.9 9.3 106 1027-1149 19-131 (151)
302 PRK14238 phosphate transporter 96.8 0.0051 1.1E-07 69.6 10.1 46 1104-1150 183-228 (271)
303 TIGR03269 met_CoM_red_A2 methy 96.8 0.0022 4.9E-08 79.3 7.9 47 1104-1150 184-231 (520)
304 PRK11819 putative ABC transpor 96.8 0.0029 6.4E-08 78.8 9.0 119 1027-1149 350-503 (556)
305 PRK14258 phosphate ABC transpo 96.8 0.0031 6.8E-08 70.8 8.3 46 1104-1149 166-212 (261)
306 PRK15064 ABC transporter ATP-b 96.8 0.0032 6.9E-08 78.1 9.0 43 1104-1149 454-496 (530)
307 PRK10982 galactose/methyl gala 96.8 0.0053 1.1E-07 75.4 10.8 53 1104-1156 407-460 (491)
308 COG2274 SunT ABC-type bacterio 96.8 0.0082 1.8E-07 76.1 12.5 120 1014-1148 487-668 (709)
309 COG3839 MalK ABC-type sugar tr 96.8 0.0027 5.9E-08 73.1 7.4 125 1015-1148 18-194 (338)
310 PRK10982 galactose/methyl gala 96.8 0.0021 4.5E-08 78.9 6.8 61 1088-1150 136-196 (491)
311 TIGR02633 xylG D-xylose ABC tr 96.8 0.0063 1.4E-07 74.9 11.0 46 1104-1149 157-202 (500)
312 PLN03073 ABC transporter F fam 96.7 0.0038 8.2E-08 79.7 9.0 43 1104-1149 360-402 (718)
313 TIGR01257 rim_protein retinal- 96.7 0.0029 6.4E-08 87.7 8.4 47 1104-1151 1077-1123(2272)
314 PRK10762 D-ribose transporter 96.7 0.005 1.1E-07 75.8 9.8 47 1104-1150 411-457 (501)
315 PRK11288 araG L-arabinose tran 96.7 0.0027 5.8E-08 78.2 7.2 46 1104-1149 156-201 (501)
316 KOG0927 Predicted transporter 96.7 0.0022 4.7E-08 76.2 6.0 41 1105-1148 238-279 (614)
317 COG3910 Predicted ATPase [Gene 96.7 0.0032 6.9E-08 65.6 6.2 117 1027-1150 37-190 (233)
318 PRK15079 oligopeptide ABC tran 96.7 0.0052 1.1E-07 71.5 8.9 49 1104-1152 177-226 (331)
319 COG4619 ABC-type uncharacteriz 96.7 0.0011 2.4E-08 67.7 2.8 135 1014-1149 17-195 (223)
320 PRK14257 phosphate ABC transpo 96.7 0.0034 7.3E-08 73.0 7.2 46 1104-1150 241-286 (329)
321 PRK06526 transposase; Provisio 96.6 0.0075 1.6E-07 67.5 9.6 101 1029-1147 100-200 (254)
322 COG1118 CysA ABC-type sulfate/ 96.6 0.0085 1.8E-07 67.1 9.6 121 1018-1147 20-197 (345)
323 PRK10535 macrolide transporter 96.6 0.004 8.7E-08 79.0 8.3 66 1088-1155 146-211 (648)
324 PRK15134 microcin C ABC transp 96.6 0.0064 1.4E-07 75.4 9.8 47 1104-1150 441-488 (529)
325 TIGR01187 potA spermidine/putr 96.6 0.0028 6.1E-08 73.5 6.2 46 1104-1149 116-162 (325)
326 COG0488 Uup ATPase components 96.6 0.0037 7.9E-08 76.7 7.3 39 1105-1146 170-208 (530)
327 PRK13657 cyclic beta-1,2-gluca 96.6 0.0072 1.6E-07 76.0 10.1 52 1104-1156 487-538 (588)
328 PF02463 SMC_N: RecF/RecN/SMC 96.6 0.01 2.3E-07 64.6 10.1 60 1101-1161 153-212 (220)
329 PLN03073 ABC transporter F fam 96.6 0.0057 1.2E-07 78.1 9.1 43 1104-1149 643-685 (718)
330 TIGR02858 spore_III_AA stage I 96.6 0.0065 1.4E-07 68.5 8.5 99 1028-1150 112-231 (270)
331 PRK11308 dppF dipeptide transp 96.5 0.014 3.1E-07 67.8 11.0 52 1104-1155 170-223 (327)
332 PRK15134 microcin C ABC transp 96.5 0.0066 1.4E-07 75.3 8.8 46 1104-1149 172-218 (529)
333 cd01120 RecA-like_NTPases RecA 96.5 0.011 2.5E-07 60.1 9.1 23 1029-1051 1-23 (165)
334 PRK10789 putative multidrug tr 96.5 0.016 3.5E-07 72.5 12.1 46 1104-1150 467-512 (569)
335 TIGR00630 uvra excinuclease AB 96.5 0.017 3.6E-07 75.3 12.4 73 1087-1159 829-902 (924)
336 PF03266 NTPase_1: NTPase; In 96.5 0.0014 3.1E-08 68.6 2.2 115 1030-1149 2-135 (168)
337 TIGR01842 type_I_sec_PrtD type 96.5 0.047 1E-06 68.0 16.0 48 1104-1151 470-517 (544)
338 PRK06067 flagellar accessory p 96.4 0.0067 1.4E-07 67.0 7.5 39 1026-1064 24-63 (234)
339 COG1127 Ttg2A ABC-type transpo 96.4 0.017 3.6E-07 62.8 10.1 45 1104-1148 161-206 (263)
340 PF13555 AAA_29: P-loop contai 96.4 0.0027 5.9E-08 54.9 3.4 34 1017-1052 15-48 (62)
341 PF09038 53-BP1_Tudor: Tumour 96.4 0.004 8.7E-08 60.1 4.8 43 102-145 1-43 (122)
342 PRK15093 antimicrobial peptide 96.4 0.005 1.1E-07 71.6 6.8 48 1104-1151 174-222 (330)
343 TIGR03375 type_I_sec_LssB type 96.4 0.016 3.5E-07 74.3 12.0 45 1105-1150 618-662 (694)
344 TIGR02204 MsbA_rel ABC transpo 96.4 0.06 1.3E-06 67.5 16.8 51 1104-1155 492-542 (576)
345 PRK10790 putative multidrug tr 96.4 0.0079 1.7E-07 75.7 8.8 50 1105-1155 493-542 (592)
346 PRK10522 multidrug transporter 96.4 0.014 2.9E-07 72.8 10.7 57 1097-1155 460-517 (547)
347 TIGR00955 3a01204 The Eye Pigm 96.4 0.0052 1.1E-07 77.6 7.0 55 1095-1149 173-227 (617)
348 cd03241 ABC_RecN RecN ATPase i 96.4 0.016 3.5E-07 65.7 10.2 53 1105-1158 191-243 (276)
349 COG4586 ABC-type uncharacteriz 96.4 0.022 4.8E-07 62.8 10.6 121 1027-1155 50-225 (325)
350 TIGR02203 MsbA_lipidA lipid A 96.3 0.021 4.5E-07 71.5 12.0 60 1097-1159 480-539 (571)
351 PRK11174 cysteine/glutathione 96.3 0.016 3.5E-07 72.9 10.9 45 1105-1150 502-546 (588)
352 TIGR00954 3a01203 Peroxysomal 96.3 0.027 5.9E-07 71.7 12.9 53 1104-1159 598-650 (659)
353 PRK10261 glutathione transport 96.3 0.011 2.3E-07 74.9 9.2 46 1104-1149 184-230 (623)
354 PRK11176 lipid transporter ATP 96.3 0.023 4.9E-07 71.4 12.0 34 1014-1048 357-390 (582)
355 COG3842 PotA ABC-type spermidi 96.3 0.017 3.6E-07 67.1 9.7 141 992-1148 4-197 (352)
356 PRK10261 glutathione transport 96.3 0.012 2.7E-07 74.3 9.5 46 1104-1149 479-525 (623)
357 COG4988 CydD ABC-type transpor 96.3 0.095 2.1E-06 63.7 16.1 196 939-1155 269-523 (559)
358 TIGR03797 NHPM_micro_ABC2 NHPM 96.3 0.077 1.7E-06 68.0 16.7 42 1013-1063 466-507 (686)
359 PRK14722 flhF flagellar biosyn 96.2 0.0048 1E-07 72.4 4.6 81 1027-1118 137-227 (374)
360 cd01131 PilT Pilus retraction 96.2 0.016 3.5E-07 62.3 8.4 19 1029-1047 3-21 (198)
361 PRK08181 transposase; Validate 96.2 0.015 3.3E-07 65.5 8.4 95 1029-1147 108-208 (269)
362 PRK12727 flagellar biosynthesi 96.1 0.013 2.8E-07 71.0 8.2 82 1028-1119 351-441 (559)
363 TIGR03796 NHPM_micro_ABC1 NHPM 96.1 0.021 4.5E-07 73.5 10.6 49 1104-1155 631-679 (710)
364 PRK11022 dppD dipeptide transp 96.1 0.0077 1.7E-07 70.0 6.0 52 1104-1155 169-222 (326)
365 PRK04296 thymidine kinase; Pro 96.1 0.022 4.7E-07 60.9 8.9 108 1028-1147 3-115 (190)
366 COG4178 ABC-type uncharacteriz 96.1 0.17 3.7E-06 62.4 17.4 59 1097-1160 526-586 (604)
367 PRK06995 flhF flagellar biosyn 96.0 0.0052 1.1E-07 74.2 4.2 81 1028-1118 257-346 (484)
368 TIGR01194 cyc_pep_trnsptr cycl 96.0 0.037 8.1E-07 69.1 11.7 46 1104-1149 486-532 (555)
369 TIGR02857 CydD thiol reductant 96.0 0.034 7.3E-07 69.0 11.2 46 1105-1151 475-520 (529)
370 PRK09473 oppD oligopeptide tra 95.9 0.03 6.5E-07 65.2 9.8 48 1104-1151 177-225 (330)
371 PRK08533 flagellar accessory p 95.9 0.024 5.2E-07 62.6 8.4 24 1027-1050 24-47 (230)
372 COG2401 ABC-type ATPase fused 95.9 0.022 4.7E-07 65.9 8.1 121 1027-1153 409-574 (593)
373 TIGR01271 CFTR_protein cystic 95.9 0.029 6.2E-07 77.6 10.9 51 1105-1156 565-616 (1490)
374 COG4615 PvdE ABC-type sideroph 95.8 0.087 1.9E-06 60.9 12.4 140 992-1146 321-507 (546)
375 COG4559 ABC-type hemin transpo 95.8 0.0076 1.6E-07 64.2 3.8 29 1027-1063 27-55 (259)
376 PLN03140 ABC transporter G fam 95.8 0.017 3.6E-07 79.3 8.0 47 1103-1149 1034-1080(1470)
377 COG1618 Predicted nucleotide k 95.8 0.016 3.4E-07 59.3 5.8 124 1030-1158 8-157 (179)
378 KOG0059 Lipid exporter ABCA1 a 95.8 0.021 4.5E-07 75.0 8.4 50 1104-1153 714-764 (885)
379 PRK11160 cysteine/glutathione 95.8 0.046 1E-06 68.5 11.1 46 1104-1150 491-536 (574)
380 PF00005 ABC_tran: ABC transpo 95.7 0.0053 1.2E-07 61.4 2.2 22 1027-1048 11-32 (137)
381 PRK00349 uvrA excinuclease ABC 95.7 0.1 2.3E-06 68.3 14.3 72 1088-1159 832-904 (943)
382 PRK06893 DNA replication initi 95.7 0.028 6E-07 62.0 7.8 93 1028-1148 40-134 (229)
383 COG1136 SalX ABC-type antimicr 95.7 0.076 1.7E-06 58.0 10.8 57 1104-1160 158-215 (226)
384 PRK06921 hypothetical protein; 95.6 0.043 9.3E-07 61.9 8.9 99 1028-1148 118-225 (266)
385 TIGR02868 CydC thiol reductant 95.6 0.047 1E-06 67.8 10.1 33 1015-1048 350-382 (529)
386 PF13173 AAA_14: AAA domain 95.6 0.021 4.6E-07 56.8 5.7 25 1027-1051 2-26 (128)
387 cd01124 KaiC KaiC is a circadi 95.6 0.013 2.9E-07 61.7 4.5 117 1030-1150 2-142 (187)
388 PTZ00243 ABC transporter; Prov 95.6 0.03 6.5E-07 77.7 9.0 52 1104-1155 798-849 (1560)
389 PRK00635 excinuclease ABC subu 95.5 0.14 3.1E-06 70.5 14.8 71 1088-1158 811-882 (1809)
390 COG4618 ArpD ABC-type protease 95.5 0.082 1.8E-06 63.0 11.0 51 1105-1155 489-539 (580)
391 PRK12377 putative replication 95.5 0.068 1.5E-06 59.6 10.0 101 1029-1147 103-205 (248)
392 COG1101 PhnK ABC-type uncharac 95.5 0.063 1.4E-06 57.6 9.1 127 1014-1150 20-211 (263)
393 PF00004 AAA: ATPase family as 95.5 0.032 7E-07 54.9 6.8 68 1030-1119 1-71 (132)
394 COG2884 FtsE Predicted ATPase 95.5 0.1 2.3E-06 54.9 10.5 46 1104-1149 153-198 (223)
395 PRK14721 flhF flagellar biosyn 95.4 0.023 5.1E-07 67.7 6.4 84 1028-1118 192-281 (420)
396 PLN03140 ABC transporter G fam 95.3 0.017 3.7E-07 79.1 5.6 44 1105-1148 353-397 (1470)
397 PRK07952 DNA replication prote 95.3 0.032 7E-07 62.0 6.7 102 1029-1146 101-203 (244)
398 COG1116 TauB ABC-type nitrate/ 95.3 0.046 9.9E-07 60.1 7.6 56 1094-1149 135-192 (248)
399 TIGR00958 3a01208 Conjugate Tr 95.3 0.066 1.4E-06 68.9 10.4 34 1014-1048 495-528 (711)
400 cd01121 Sms Sms (bacterial rad 95.3 0.034 7.3E-07 65.7 7.1 82 1027-1115 82-167 (372)
401 TIGR00956 3a01205 Pleiotropic 95.3 0.017 3.8E-07 79.1 5.4 45 1104-1148 225-270 (1394)
402 COG3845 ABC-type uncharacteriz 95.2 0.075 1.6E-06 63.2 9.6 127 1013-1148 16-200 (501)
403 TIGR01193 bacteriocin_ABC ABC- 95.2 0.51 1.1E-05 60.9 18.0 47 1105-1153 628-674 (708)
404 KOG0064 Peroxisomal long-chain 95.1 0.086 1.9E-06 62.8 9.5 22 1027-1048 508-529 (728)
405 COG1117 PstB ABC-type phosphat 95.1 0.098 2.1E-06 56.1 8.9 46 1104-1150 165-210 (253)
406 KOG0927 Predicted transporter 95.1 0.042 9.2E-07 65.7 6.9 127 1015-1149 405-567 (614)
407 PHA00729 NTP-binding motif con 95.1 0.018 4E-07 62.8 3.7 23 1029-1051 19-41 (226)
408 PRK08939 primosomal protein Dn 95.0 0.15 3.1E-06 58.8 11.2 96 1028-1147 157-260 (306)
409 TIGR00956 3a01205 Pleiotropic 95.0 0.033 7.1E-07 76.5 6.8 46 1104-1149 917-963 (1394)
410 TIGR00957 MRP_assoc_pro multi 95.0 0.098 2.1E-06 72.7 11.4 48 1104-1151 776-825 (1522)
411 COG4138 BtuD ABC-type cobalami 95.0 0.1 2.2E-06 54.1 8.5 44 1107-1150 151-194 (248)
412 cd01125 repA Hexameric Replica 95.0 0.12 2.5E-06 57.3 9.9 25 1029-1053 3-27 (239)
413 TIGR01846 type_I_sec_HlyB type 94.9 0.099 2.2E-06 67.1 10.3 47 1104-1151 609-655 (694)
414 cd01130 VirB11-like_ATPase Typ 94.8 0.064 1.4E-06 57.1 7.1 21 1028-1048 26-46 (186)
415 PRK09087 hypothetical protein; 94.8 0.045 9.7E-07 60.3 6.0 81 1027-1146 44-125 (226)
416 PRK12723 flagellar biosynthesi 94.8 0.025 5.5E-07 66.9 4.3 92 1027-1127 174-273 (388)
417 PRK14974 cell division protein 94.7 0.079 1.7E-06 61.6 7.9 30 1027-1058 140-169 (336)
418 PF13476 AAA_23: AAA domain; P 94.7 0.026 5.6E-07 59.9 3.7 31 1017-1051 13-43 (202)
419 TIGR00602 rad24 checkpoint pro 94.6 0.024 5.2E-07 70.9 3.5 23 1027-1049 110-132 (637)
420 PF05729 NACHT: NACHT domain 94.5 0.053 1.2E-06 55.5 5.4 25 1028-1052 1-25 (166)
421 PRK08116 hypothetical protein; 94.5 0.15 3.2E-06 57.7 9.3 96 1028-1147 115-220 (268)
422 COG1137 YhbG ABC-type (unclass 94.5 0.022 4.7E-07 60.3 2.4 135 1013-1157 17-210 (243)
423 PF01695 IstB_IS21: IstB-like 94.5 0.077 1.7E-06 56.2 6.5 103 1028-1148 48-150 (178)
424 TIGR03015 pepcterm_ATPase puta 94.4 0.045 9.7E-07 61.4 4.9 22 1027-1048 43-64 (269)
425 TIGR02788 VirB11 P-type DNA tr 94.4 0.12 2.6E-06 59.7 8.4 21 1028-1048 145-165 (308)
426 TIGR03499 FlhF flagellar biosy 94.4 0.032 6.8E-07 63.5 3.7 82 1027-1116 194-282 (282)
427 PRK11823 DNA repair protein Ra 94.3 0.078 1.7E-06 64.3 6.9 85 1027-1116 80-166 (446)
428 cd01122 GP4d_helicase GP4d_hel 94.3 0.093 2E-06 59.1 7.1 42 1022-1063 25-68 (271)
429 cd03115 SRP The signal recogni 94.3 0.17 3.8E-06 52.9 8.7 34 1029-1064 2-38 (173)
430 PRK14723 flhF flagellar biosyn 94.2 0.066 1.4E-06 67.9 6.2 82 1027-1119 185-276 (767)
431 PRK08084 DNA replication initi 94.2 0.15 3.2E-06 56.5 8.2 89 1028-1146 46-139 (235)
432 PRK04195 replication factor C 94.2 0.13 2.8E-06 63.1 8.6 98 1027-1146 39-138 (482)
433 PF03215 Rad17: Rad17 cell cyc 94.1 0.064 1.4E-06 65.9 5.5 30 1026-1060 44-73 (519)
434 TIGR02322 phosphon_PhnN phosph 94.0 0.038 8.3E-07 58.1 3.2 23 1028-1050 2-24 (179)
435 PTZ00265 multidrug resistance 94.0 0.12 2.7E-06 71.2 8.8 52 1104-1155 595-647 (1466)
436 PRK08727 hypothetical protein; 94.0 0.2 4.4E-06 55.3 8.9 92 1028-1146 42-134 (233)
437 PLN00104 MYST -like histone ac 93.9 0.28 6.1E-06 58.2 10.3 45 106-150 56-109 (450)
438 PRK10078 ribose 1,5-bisphospho 93.9 0.042 9.1E-07 58.4 3.1 21 1028-1048 3-23 (186)
439 PF13481 AAA_25: AAA domain; P 93.8 0.066 1.4E-06 56.8 4.6 122 1028-1149 33-189 (193)
440 PLN03130 ABC transporter C fam 93.8 0.23 5.1E-06 69.3 10.8 45 1105-1150 757-802 (1622)
441 cd00984 DnaB_C DnaB helicase C 93.8 0.21 4.5E-06 55.2 8.6 39 1026-1064 12-52 (242)
442 PRK11889 flhF flagellar biosyn 93.7 0.095 2.1E-06 61.6 5.8 87 1027-1119 241-333 (436)
443 PF05707 Zot: Zonular occluden 93.7 0.066 1.4E-06 57.4 4.3 116 1029-1148 2-126 (193)
444 cd01123 Rad51_DMC1_radA Rad51_ 93.6 0.14 3.1E-06 56.2 6.9 29 1026-1054 18-46 (235)
445 PF13401 AAA_22: AAA domain; P 93.6 0.039 8.5E-07 54.5 2.2 28 1027-1054 4-31 (131)
446 TIGR03420 DnaA_homol_Hda DnaA 93.6 0.15 3.2E-06 55.7 6.9 26 1027-1052 38-63 (226)
447 KOG1970 Checkpoint RAD17-RFC c 93.6 0.12 2.6E-06 62.1 6.3 82 1027-1116 110-204 (634)
448 TIGR00750 lao LAO/AO transport 93.5 0.29 6.3E-06 56.2 9.4 93 1027-1125 34-145 (300)
449 TIGR02880 cbbX_cfxQ probable R 93.5 0.28 6E-06 56.0 9.1 69 1030-1117 61-132 (284)
450 PLN03232 ABC transporter C fam 93.4 0.43 9.3E-06 66.4 12.4 46 1105-1150 757-802 (1495)
451 PRK05703 flhF flagellar biosyn 93.3 0.19 4.1E-06 60.5 7.6 83 1028-1120 222-313 (424)
452 COG4674 Uncharacterized ABC-ty 93.3 0.13 2.7E-06 54.5 5.2 59 1087-1148 148-206 (249)
453 PRK09825 idnK D-gluconate kina 93.3 0.063 1.4E-06 56.7 3.2 22 1028-1049 4-25 (176)
454 PRK08903 DnaA regulatory inact 93.1 0.21 4.5E-06 54.8 7.1 24 1027-1050 42-65 (227)
455 COG3950 Predicted ATP-binding 93.1 0.08 1.7E-06 60.1 3.7 35 1014-1051 14-48 (440)
456 TIGR03263 guanyl_kin guanylate 93.1 0.07 1.5E-06 56.1 3.1 22 1028-1049 2-23 (180)
457 cd03242 ABC_RecF RecF is a rec 93.0 0.086 1.9E-06 59.6 4.0 33 1016-1052 14-46 (270)
458 PRK10416 signal recognition pa 93.0 0.15 3.2E-06 59.1 5.9 29 1027-1057 114-142 (318)
459 PHA02544 44 clamp loader, smal 92.9 0.5 1.1E-05 54.5 10.2 23 1027-1049 43-65 (316)
460 KOG0066 eIF2-interacting prote 92.9 0.78 1.7E-05 53.6 11.2 132 1013-1158 602-771 (807)
461 TIGR00235 udk uridine kinase. 92.9 0.079 1.7E-06 57.4 3.2 24 1026-1049 5-28 (207)
462 TIGR03881 KaiC_arch_4 KaiC dom 92.9 0.76 1.6E-05 50.4 11.0 26 1026-1051 19-44 (229)
463 KOG0056 Heavy metal exporter H 92.8 0.68 1.5E-05 54.9 10.7 133 1013-1148 551-733 (790)
464 PRK09361 radB DNA repair and r 92.7 0.3 6.5E-06 53.4 7.6 38 1026-1063 22-60 (225)
465 PRK12726 flagellar biosynthesi 92.7 0.23 5E-06 58.3 6.9 85 1027-1118 206-297 (407)
466 COG1126 GlnQ ABC-type polar am 92.7 0.084 1.8E-06 56.7 3.0 45 1104-1151 152-199 (240)
467 COG1132 MdlB ABC-type multidru 92.7 0.43 9.4E-06 59.8 9.9 40 1108-1148 485-524 (567)
468 COG4604 CeuD ABC-type enteroch 92.6 0.11 2.3E-06 55.1 3.5 37 1014-1051 15-51 (252)
469 PRK09270 nucleoside triphospha 92.5 0.096 2.1E-06 57.7 3.4 23 1026-1048 32-54 (229)
470 PTZ00454 26S protease regulato 92.5 0.67 1.4E-05 55.4 10.6 23 1027-1049 179-201 (398)
471 cd01393 recA_like RecA is a b 92.4 0.48 1E-05 51.7 8.8 29 1026-1054 18-46 (226)
472 PF06003 SMN: Survival motor n 92.3 0.17 3.7E-06 56.9 4.9 49 102-150 67-116 (264)
473 cd00820 PEPCK_HprK Phosphoenol 92.2 0.11 2.5E-06 50.1 3.0 22 1027-1048 15-36 (107)
474 cd02025 PanK Pantothenate kina 92.1 0.092 2E-06 57.6 2.6 21 1029-1049 1-21 (220)
475 TIGR01420 pilT_fam pilus retra 92.1 0.33 7.1E-06 56.9 7.4 21 1028-1048 123-143 (343)
476 TIGR00416 sms DNA repair prote 92.1 0.28 6.1E-06 59.6 6.9 112 1026-1148 93-222 (454)
477 cd02023 UMPK Uridine monophosp 92.0 0.1 2.2E-06 56.0 2.8 23 1029-1051 1-23 (198)
478 PRK14962 DNA polymerase III su 91.9 0.23 4.9E-06 60.6 5.9 89 1028-1119 37-130 (472)
479 PRK06731 flhF flagellar biosyn 91.9 0.38 8.2E-06 54.4 7.2 87 1027-1119 75-167 (270)
480 PRK10787 DNA-binding ATP-depen 91.9 0.18 3.9E-06 65.2 5.2 104 1028-1149 350-458 (784)
481 PF13304 AAA_21: AAA domain; P 91.9 0.047 1E-06 59.2 0.0 52 1097-1148 247-299 (303)
482 TIGR03185 DNA_S_dndD DNA sulfu 91.6 0.15 3.2E-06 65.0 3.9 25 1027-1051 28-52 (650)
483 TIGR00611 recf recF protein. A 91.6 0.2 4.4E-06 59.1 4.8 24 1028-1051 24-47 (365)
484 TIGR01360 aden_kin_iso1 adenyl 91.5 0.15 3.2E-06 53.8 3.4 22 1027-1048 3-24 (188)
485 PRK14963 DNA polymerase III su 91.5 0.8 1.7E-05 56.4 10.0 88 1027-1118 36-128 (504)
486 TIGR02237 recomb_radB DNA repa 91.5 0.21 4.5E-06 54.0 4.5 39 1026-1064 11-50 (209)
487 CHL00181 cbbX CbbX; Provisiona 91.4 0.97 2.1E-05 51.7 10.0 69 1030-1117 62-133 (287)
488 PRK00411 cdc6 cell division co 91.4 0.21 4.6E-06 59.4 4.8 89 1027-1118 55-150 (394)
489 PRK00771 signal recognition pa 91.3 0.41 8.9E-06 57.7 7.1 29 1027-1057 95-123 (437)
490 PRK09435 membrane ATPase/prote 91.3 0.82 1.8E-05 53.2 9.2 91 1027-1123 56-165 (332)
491 PF13207 AAA_17: AAA domain; P 91.2 0.17 3.7E-06 49.3 3.1 20 1029-1048 1-20 (121)
492 PRK14087 dnaA chromosomal repl 91.2 0.3 6.4E-06 59.4 5.8 102 1029-1147 143-248 (450)
493 PF13671 AAA_33: AAA domain; P 91.1 0.17 3.6E-06 50.8 3.1 20 1029-1048 1-20 (143)
494 PRK10246 exonuclease subunit S 91.1 0.18 3.9E-06 67.6 4.2 26 1027-1052 30-55 (1047)
495 TIGR02688 conserved hypothetic 91.0 0.57 1.2E-05 55.7 7.7 73 1030-1130 212-286 (449)
496 TIGR02524 dot_icm_DotB Dot/Icm 91.0 0.16 3.4E-06 59.8 3.1 22 1027-1048 134-155 (358)
497 PRK06835 DNA replication prote 90.9 0.64 1.4E-05 54.1 8.0 104 1028-1147 184-288 (329)
498 TIGR00554 panK_bact pantothena 90.8 0.21 4.6E-06 57.0 3.8 22 1027-1048 62-83 (290)
499 PRK00300 gmk guanylate kinase; 90.8 0.18 4E-06 54.2 3.1 23 1027-1049 5-27 (205)
500 PRK00064 recF recombination pr 90.7 0.21 4.5E-06 59.0 3.9 23 1028-1050 24-46 (361)
No 1
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=3.4e-180 Score=1589.66 Aligned_cols=985 Identities=42% Similarity=0.661 Sum_probs=812.6
Q ss_pred ccccCccccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEccCCchhhcccCCceEEEEeccchhhhhccccccccccc
Q 001077 98 AKSYGEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEWVQESVSLLKRLRRDSFKKVVV 177 (1162)
Q Consensus 98 ~~~~~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1162)
....+++.+| .||.+.|..++....+ |-++...-+..-+|+-+|.. ...+-...+|--...++.
T Consensus 8 ~~t~~~e~~~-----------~~~~~~v~~~~~~e~k----~l~~~t~k~~~~~e~~~~~~-~~~r~~~~~rv~~~e~~~ 71 (1125)
T KOG0217|consen 8 HMTFFEETPG-----------KLYRNSVGLKPKEEPK----SLRNGTLKIKNLKEKEEFKS-GQPREVVSSRVKEYEAVG 71 (1125)
T ss_pred ceeecccCcc-----------hhcccccccCCccchh----hhcCCCcCcCccchhhHhhc-cCccccccccccchhhcC
Confidence 3445677776 7999999988876665 65555544555556666663 211111111100122222
Q ss_pred CChhhhhccc-CccCCCCCCCccchhc-ccCCC-CCCCcchh-------hchhhhhhh--------ccccCCccccCCc-
Q 001077 178 EDDEEMENVE-DEISDDRSDSSDDDWN-KNVGK-EDVSEDEE-------VDLVDEQEN--------KVLRGRKRKSSGV- 238 (1162)
Q Consensus 178 ~~~~~~~~~~-~~~~~~~~~~~d~~~~-~~~~~-~~~~~~e~-------~~~~~e~e~--------~~~~~~~~~~~~~- 238 (1162)
.+.+...+.. .-.-++.+++||+||+ |.+.+ +++++++| ++..+|++. ..+++|.+++...
T Consensus 72 ~d~~~~~~~~~~~~k~~~~sDsd~d~g~k~~~~~~~~d~~~~D~~~~d~~~~~~ee~~~~~~~~~~~~~~~r~~~a~~v~ 151 (1125)
T KOG0217|consen 72 DDADIVVESSSEKPKSGLDSDSDEDFGGKEVEEKEDSDEELDDETASDYEVVISEESEGGEPVCRVSDTDSRSRKAESVS 151 (1125)
T ss_pred CCccceeeecccCCccccCCCcccccCcccccccccccccccccccCCcceeccccccCCCcccccCCCcccchhccccc
Confidence 2222222222 2334556778888887 22222 22222111 011111111 2355666666442
Q ss_pred ----cCCCCCCCCCCCCccccccCCcccc-CC-CCCCCCC-CCCcccccccccchhcccccCccCC-CccccCCCCCCCC
Q 001077 239 ----KKSKSDGNAVNADFKSPIIKPVKIF-GS-DKLSNGF-DNPVMGDVSERFSAREADKFHFLGP-DRRDAKRRRPGDV 310 (1162)
Q Consensus 239 ----kk~~~~~~~~~~~~~~~~~~p~~~~-~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~fl~~-~~rD~~~r~p~~~ 310 (1162)
||..+...++..+.......|.+-. +. ++.+.+. .....++..+|+.++.++++.||.+ ++||+++|||+||
T Consensus 152 k~~~kk~~~~~~~~~~~~~~~~~~p~~~~~~~a~r~~~~~~~i~~~~~~~~~~~a~~~E~~r~l~~e~~RD~~rrr~~dp 231 (1125)
T KOG0217|consen 152 KGKSKKSPSDSGAVSMGHDLDFNDPMPLREGQASRSASGYCGISNGETELSRMEAFDHEKERYLKLEDVRDALRRRRGDP 231 (1125)
T ss_pred ccccCCCCCCccccccccccccCCCCccccCccccccccccccccccccccchhhhcccchhhccHHHhhhhhcCCCCCC
Confidence 2222223355555555567776621 22 2222333 2233344467788888888777775 5799999999999
Q ss_pred CCCCCCCCCCcccccCCCHHHHHHHHHHHhCCCeEEEEeeCceEEEecccHHHHhhhcceeeecCCCCcCCcCcccHhHH
Q 001077 311 YYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMN 390 (1162)
Q Consensus 311 ~ydp~Tl~iP~~~~~~lTP~~~Qyw~iK~~~~D~VLfFkvGkFYElf~~DA~i~a~~L~L~~t~g~~p~~GfPe~sl~~y 390 (1162)
+||||||||||++|+++||+++|||+||++|||+|||||+|||||||++||.+++++|+|+||++++|||||||++|+.|
T Consensus 232 ~yDp~TLyiP~s~~~kftpg~kqwWeiKs~~fD~ivfFk~GKFyELye~DA~vg~~~~dl~f~~vN~~~~GfPE~sf~~~ 311 (1125)
T KOG0217|consen 232 EYDPRTLYIPPSFWKKFTPGEKQWWEIKSDNFDTIVFFKKGKFYELYEMDALVGARLFDLKFMDVNMPHSGFPEGSFDYW 311 (1125)
T ss_pred CCCccceecCHHHHhcCCchhhhhhhhhhhcccEEEEEecchHHHHHhhhhhhhhhhcceeecccccccCCCCccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeEEEEecCCChHHHHHHhhhcCCCCceeeeeEEEEeeCceeeeccccCCCCCCcEEEEEEecCCCCCCCCC
Q 001077 391 VEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQST 470 (1162)
Q Consensus 391 ~~kLV~~GyKVavvEQ~Et~~~~~~r~k~~g~k~~vv~Rev~~ViTpGTl~d~~~l~~~~~~~yllaI~e~~~~~~~~~~ 470 (1162)
+.+|+++|||||+|||+||+.++++|++.+|+++|||+||||+|+|+||++|..++. ++.+.|||||.|+..+.. .+
T Consensus 312 a~q~iq~GYkvarVEQtEt~l~~e~r~~~~~~kdkvvrRev~~ilt~GT~td~~l~~-~~~akylmai~e~~~~~~--~~ 388 (1125)
T KOG0217|consen 312 ADQFIQKGYKVARVEQTETPLGKEIRERKTGKKDKVVRREVCRILTNGTLTDIALLT-SDLAKYLMAIKESEESYS--TG 388 (1125)
T ss_pred HHHHHhccceeeeeccccChHHhhhhhcccccchhhHHHHHHHHhcCCcchhHHHhc-cHHHHHHHHHhhcCCCCC--cC
Confidence 999999999999999999999999999999999999999999999999999977664 456789999999876421 45
Q ss_pred CceEEEEEEEcCCCeEEEEEEcCccchhHHHHHHHccCccEEEecCCCCChHHHHHHHhccCCCccccccCCccccChhh
Q 001077 471 DRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAET 550 (1162)
Q Consensus 471 ~~~~Gva~vD~sTg~~~l~~f~Dd~~~s~L~t~L~~~~P~EIi~~~~~~s~~t~~~l~~~~~~~~~~~~~~~~~f~~~~~ 550 (1162)
...||+|++|++||+|+++||+||..++.|+|+|++++|+|+|.+.+.++..|...++....++.+..++|..+||+.++
T Consensus 389 ~~s~gvc~iDtstge~~~~eF~DDr~~s~L~tlLs~~rp~E~I~e~~~ls~~t~~~ik~~~~~~~~~n~~~~~eFwdsek 468 (1125)
T KOG0217|consen 389 EVSFGVCFIDTSTGEINIGEFCDDRHCSKLDTLLSQVRPVELIEERKNLSDPTKVIIKLKLSSNLVENLVPKSEFWDSEK 468 (1125)
T ss_pred ceeeeEEEEEcccceEEEEEeecchhhhHHHHHHHcccHHHHHHHhhccCCceeeeeeeeecchhhhcccChhhhcchhh
Confidence 68899999999999999999999999999999999999999999999999988877776666666677778789999999
Q ss_pred hHHHH--HHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhcccc
Q 001077 551 TVLEI--KNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFA 628 (1162)
Q Consensus 551 ~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~~~~~ll~~~ 628 (1162)
+..++ ..||... +...+|.++. ...++++++++|+|++++||+++++|+.+++++
T Consensus 469 ~~~eii~~dy~~~~--------------------g~e~~~sil~---~p~~~~~la~safg~~~~Ylk~~~id~~llsm~ 525 (1125)
T KOG0217|consen 469 TGREIISEDYFESL--------------------GLEDSPSILK---SPNTDKELALSAFGGLFYYLKKLLIDEELLSMK 525 (1125)
T ss_pred HHHHHhhhhhhhcc--------------------cccCchhhcc---CCCccchhhHHHHHHHHHHHHHHhhHHHHhhhh
Confidence 88764 2444310 1223444432 223457899999999999999999999999999
Q ss_pred ceeecCCCCCccCCCCCeeecCHHHHHHccCccccCCCCCcccHHHHHhhhcChHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 001077 629 KFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDA 708 (1162)
Q Consensus 629 ~f~~~~~~~~~~~~~~~~M~LD~~Tl~~LEI~~~~~~g~~~gSL~~lLn~~~T~~GkRlLr~wl~~PL~d~~~I~~R~da 708 (1162)
+|+.|+... ...|+||+.||+|||||.|.++|+.+||||.++|+|.||||||||+.||++||+|.+.|++||||
T Consensus 526 n~~ey~~~~------~s~mvlD~~tL~NleIf~Ns~~G~~~gtL~~~~~~csTpfGKRllk~Wl~~Pl~~~~~I~~R~da 599 (1125)
T KOG0217|consen 526 NFEEYDSLD------QSEMVLDGATLENLEIFSNSRNGGDEGTLFYAVNRCSTPFGKRLLKTWLMAPLCDKEDIKQRQDA 599 (1125)
T ss_pred hhhhcchhc------ccceeecchhhhhhhhhccCCCCCCchhHHHHHhhccChHHHHHHHHHhhCcCCCHHHHHHHHHH
Confidence 999886432 23499999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCchhHHHHHHHhCCCCcHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001077 709 VAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAI 788 (1162)
Q Consensus 709 Ve~l~~~~~~~~~~lr~~L~~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~ 788 (1162)
|+.|.. ++..+.++...|+++||+||+|.|+|..+.. .++++.+|+.+|.+|+.+...+..+...
T Consensus 600 v~~l~~-~~~~~~~~~e~l~klPDlERlL~Rih~~~~~--------------~~k~i~~f~rvLegfk~~~~~~~~~~~v 664 (1125)
T KOG0217|consen 600 VDSLGK-APMDRTKVGETLKKLPDLERLLVRIHNGGEK--------------NKKKIADFIRVLEGFKEINKLLGSLINV 664 (1125)
T ss_pred HHHHhc-CchhHHHHHHHHhhCCcHHHHHHHHHhcCcc--------------chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999986 5666778999999999999999999976432 2578999999999999998888776655
Q ss_pred Hhhcc-hhhHHhhhcCCCCchhHHHHHHHHHhhcchhhhcCCCceeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001077 789 LENTE-SRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLL 867 (1162)
Q Consensus 789 l~~~~-s~~l~~l~~~~~~~~~l~~~l~~i~~~id~~~~~~~g~i~~~~G~d~~lD~~~~~l~~i~~~L~~~l~~~~~~l 867 (1162)
+.... ..++..++ ..+|++..-+..+..+|||..+.++|.|+|..|+|.+||.+...+++++++|.++|+++++.+
T Consensus 665 ~~~~~~~~~is~~~---~~~p~~~~~i~~~~~af~r~~a~~eg~i~P~~Gfd~eyD~a~k~~~e~e~~L~~~L~~~rk~l 741 (1125)
T KOG0217|consen 665 LKEGEGLRLISELL---ESMPNLSEEIENWTEAFDRVKAVKEGVIVPLEGFDEEYDEAMKRVDEAENELLAYLEEYRKRL 741 (1125)
T ss_pred HHhhHHHHHHHHHh---cCcchhhHHHHHHHHHHHHHHHhhcCccCCCccccHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 43222 22233332 348999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEeCCceEEEEccccccCCCCCcEEEeeeccceEEEeChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001077 868 GDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEH 947 (1162)
Q Consensus 868 ~~~~i~~~~~~~~~y~iev~~~~~~~vp~~~~~~ss~k~~~ry~tp~l~~l~~el~~~~~~~~~~~~~il~~l~~~~~~~ 947 (1162)
+|.+|+|++++++.|++|||++....+|.+|++.+++||+.||+||++.++...|.++++++.....++.++++.+|.+|
T Consensus 742 ~c~si~~~~vGk~~y~lEvP~n~~~~s~~~~~~~S~~Kg~~RY~tp~~~kli~~l~~aee~~~~~~~d~~~r~~~~f~~~ 821 (1125)
T KOG0217|consen 742 GCSSIVFVDVGKDVYQLEVPENGGVPSSLRYELMSAKKGVSRYYTPDLRKLIAHLDEAEERKKSSLSDLKRRLIVRFDEH 821 (1125)
T ss_pred CCCceeEeecCceEEEEecCcccCCCCchHHHHHHhhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeEcCCCCCCCCcEEEeeccCCccccccCCCCcccccceecCCCCCc
Q 001077 948 HNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNA 1027 (1162)
Q Consensus 948 ~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi~l~~~~~~ 1027 (1162)
+..|+++++++|.||||+|||.+|..+++++|||+|++.. ++.+.+.++.+||||+..... .+.|||||+.+|+.+..
T Consensus 822 ~~~w~~tv~~~a~iD~l~sla~~s~~~~~~~Crp~i~~~~-dt~~~l~~~~~~Hpcfsl~s~-~~~fipN~v~~g~~~e~ 899 (1125)
T KOG0217|consen 822 YIIWQATVKALASIDCLLSLAETSKGLGGPMCRPEIVEST-DTPGFLIVKGLRHPCFSLPST-GTSFIPNDVELGGAEEN 899 (1125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccceeeccc-CCCceeEEecccCceeecCcC-CCccccchhhccccccc
Confidence 9999999999999999999999999999999999999753 233489999999999976433 35799999999976677
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCCCC
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRN 1107 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~ 1107 (1162)
+++++||||||||||+|||+|++||||||||||||+.|+++++|||||||||+|+|+.|+||||+|+.||+.||++||++
T Consensus 900 ~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VPa~~~~~tpidrI~tRlGA~D~im~g~STF~vELsET~~IL~~aT~~ 979 (1125)
T KOG0217|consen 900 REGLLTGPNMGGKSTLLRQACIAVILAQIGCDVPAEVMELTPIDRIFTRLGANDDIMSGESTFFVELSETKKILKHATRH 979 (1125)
T ss_pred eeeeeccCCcCCchHHHHHHHHHHHHHHhCCCccHHHhcccchHHHhhhcccccchhcCCceEEEeccchHHHHhhcCcc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCCChhhHHHHHHHHHH-hhc-ccCceEEEehhhhc
Q 001077 1108 SLVVLDELGRGTSTSDGQAIAVFSSG-FQS-LAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1108 SLVIlDELGRGTst~DG~AIA~A~~~-~~~-l~~~~~~~th~~~~ 1150 (1162)
||||+|||||||+|+||.|||.|+++ +.. ..+..|++|||+.+
T Consensus 980 SLvi~DELGRGtst~DG~aIA~aVLe~l~~~i~c~~fFSTHYhsl 1024 (1125)
T KOG0217|consen 980 SLVIVDELGRGTSTFDGTAIAEAVLEHLSEGIQCLGFFSTHYHSL 1024 (1125)
T ss_pred ceeeehhhcCcccccCCcchHHHHHHHHHhcccccCCccccccch
Confidence 99999999999999999999999998 544 78889999999854
No 2
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=100.00 E-value=4.6e-142 Score=1335.82 Aligned_cols=711 Identities=30% Similarity=0.458 Sum_probs=592.2
Q ss_pred CCHHHHHHHHHHHhCCCeEEEEeeCceEEEecccHHHHhhhcceeeecC------CCCcCCcCcccHhHHHHHHHHcCCe
Q 001077 327 LSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG------EQPHCGFPERNFSMNVEKLARKGYR 400 (1162)
Q Consensus 327 lTP~~~Qyw~iK~~~~D~VLfFkvGkFYElf~~DA~i~a~~L~L~~t~g------~~p~~GfPe~sl~~y~~kLV~~GyK 400 (1162)
+||||||||+||++|||+|||||||||||||++||+++|++|||++|.+ ++||||||+|+++.|+++||++|||
T Consensus 1 ~TPm~~Qy~~iK~~~~D~iLffr~GdFYElf~eDA~~~a~~L~i~lt~r~~~~~~~~pm~GvP~ha~~~yl~kLv~~G~k 80 (840)
T TIGR01070 1 LTPMMQQYLKLKAEHPDALLFFRMGDFYELFYEDAKKAAQLLDISLTSRGQSADEPIPMAGIPYHAVEAYLEKLVKQGES 80 (840)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEEcCCEEEEehhhHHHHHHHhCeEEeecCCCCCCCCCcccCCHHHHHHHHHHHHHCCCE
Confidence 6999999999999999999999999999999999999999999999975 3799999999999999999999999
Q ss_pred EEEEecCCChHHHHHHhhhcCCCCceeeeeEEEEeeCceeeeccccCCCCCCcEEEEEEecCCCCCCCCCCceEEEEEEE
Q 001077 401 VLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVD 480 (1162)
Q Consensus 401 VavvEQ~Et~~~~~~r~k~~g~k~~vv~Rev~~ViTpGTl~d~~~l~~~~~~~yllaI~e~~~~~~~~~~~~~~Gva~vD 480 (1162)
||||||+|||... +++|+||||+||||||+++++++.. .+++||+||.+.. ..||+||+|
T Consensus 81 Vai~eQ~e~~~~~----------kg~v~Rev~ri~TpGT~~~~~~l~~-~~~nyl~ai~~~~---------~~~gla~~D 140 (840)
T TIGR01070 81 VAICEQIEDPKTA----------KGPVEREVVQLITPGTVSDEALLPE-RQDNLLAAIAQES---------NGFGLATLD 140 (840)
T ss_pred EEEEEecCCchhc----------CCceeeEEEEEECCCcccccccccC-CCCceEEEEEeCC---------CeEEEEEEE
Confidence 9999999998641 2599999999999999999998864 3689999997421 259999999
Q ss_pred cCCCeEEEEEEcCccchhHHHHHHHccCccEEEecCCCCChHHHHHHHhccCCCccccccCCccccChhhhHHHHHHHHh
Q 001077 481 VATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYN 560 (1162)
Q Consensus 481 ~sTg~~~l~~f~Dd~~~s~L~t~L~~~~P~EIi~~~~~~s~~t~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~ 560 (1162)
++||+|++++|.|+ ..|.+.|.+++|+|||++.+..+ .....+ . .|+.......+..+|.
T Consensus 141 ~sTG~~~~~~~~d~---~~l~~~l~~~~P~Eil~~~~~~~-~~~~~~---------~-------~f~~~~~~~~l~~~f~ 200 (840)
T TIGR01070 141 LTTGEFKVTELADK---ETLYAELQRLNPAEVLLAEDLSE-MEAIEL---------R-------EFRKDTAVMSLEAQFG 200 (840)
T ss_pred ccccEEEEEEecCH---HHHHHHHhccCCeEEEEcCCCCh-HHHHHh---------H-------hcchhHHHHHHHHhcC
Confidence 99999999999874 36999999999999999876422 221111 0 1233333344444442
Q ss_pred hcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhccccceeecCCCCCcc
Q 001077 561 RITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGD 640 (1162)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~~~~~ll~~~~f~~~~~~~~~~ 640 (1162)
... + ..+ . ..+...+++|+|+++.||+.++... +.++..+..
T Consensus 201 ~~~---l------------------------~~~-~-~~~~~~~~~a~g~ll~Yl~~~~~~~-~~~~~~~~~-------- 242 (840)
T TIGR01070 201 TED---L------------------------GGL-G-LRNAPLGLTAAGCLLQYAKRTQRTA-LPHLQPVRL-------- 242 (840)
T ss_pred ccc---h------------------------hhc-C-CCCCHHHHHHHHHHHHHHHHhChhh-hhhCCCcEE--------
Confidence 110 0 000 0 0123578999999999999876542 323333332
Q ss_pred CCCCCeeecCHHHHHHccCccccCCCCCcccHHHHHhhhcChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhcCCchhH
Q 001077 641 MAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFA 720 (1162)
Q Consensus 641 ~~~~~~M~LD~~Tl~~LEI~~~~~~g~~~gSL~~lLn~~~T~~GkRlLr~wl~~PL~d~~~I~~R~daVe~l~~~~~~~~ 720 (1162)
+..+++|.||++|++|||||.|.+ |+.+||||++||+|+|+||+|+||+||++||+|+++|++|||+|++|.. +..++
T Consensus 243 ~~~~~~m~lD~~t~~~LEl~~~~~-~~~~gSL~~~ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~Rld~Ve~l~~-~~~l~ 320 (840)
T TIGR01070 243 YELQDFMQLDAATRRNLELTENLR-GGKQNTLFSVLDETKTAMGSRLLKRWLHRPLRDREVLEARQDTVEVLLR-HFFLR 320 (840)
T ss_pred ECCCCEEEeCHHHHHhccCCccCC-CCCCCcHHHHHhhcCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHh-CHHHH
Confidence 345679999999999999999986 4578999999999999999999999999999999999999999999986 55677
Q ss_pred HHHHHHhCCCCcHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHhh
Q 001077 721 LEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHI 800 (1162)
Q Consensus 721 ~~lr~~L~~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l 800 (1162)
..++..|+++||+||+++|+..+. . ..+++..+.++|..+..+.+. +....+..+..+
T Consensus 321 ~~l~~~L~~i~Dlerll~ri~~~~-~--------------~~~dl~~l~~~l~~~~~l~~~-------l~~~~~~~l~~l 378 (840)
T TIGR01070 321 EGLRPLLKEVGDLERLAARVALGN-A--------------RPRDLARLRTSLEQLPELRAL-------LEELEGPTLQAL 378 (840)
T ss_pred HHHHHHhccCcCHHHHHHHHHcCC-C--------------CHHHHHHHHHHHHHHHHHHHH-------HHhcCcHHHHHH
Confidence 889999999999999999996431 1 134566666666554444332 222234445544
Q ss_pred hcCCCCchhHHHHHHHHHhhcchhhh--cCCCceeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEeC
Q 001077 801 LTPGKGLPAIVSILKHFKDAFDWVEA--NNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIG 878 (1162)
Q Consensus 801 ~~~~~~~~~l~~~l~~i~~~id~~~~--~~~g~i~~~~G~d~~lD~~~~~l~~i~~~L~~~l~~~~~~l~~~~i~~~~~~ 878 (1162)
.. .++.+.++.+.|..+|+.... ..+|.+ +++|+++++|.++..++++++.+.++.+++++.++.+++++....
T Consensus 379 ~~---~l~~~~~l~~~i~~~i~~~~~~~~~~~~~-I~~g~~~~Ld~lr~~~~~~~~~l~~l~~~~~~~~~i~~lk~~~~~ 454 (840)
T TIGR01070 379 AA---QIDDFSELLELLEAALIENPPLVVRDGGL-IREGYDEELDELRAASREGTDYLARLEARERERTGIPTLKVGYNA 454 (840)
T ss_pred HH---hcccHHHHHHHHHHHHhcCCccccccCCe-eCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEec
Confidence 32 345677777778888763221 123444 389999999999999999999998888878888888777776667
Q ss_pred CceEEEEccccccCCCCCcEEEeeeccceEEEeChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 001077 879 KDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAAT 958 (1162)
Q Consensus 879 ~~~y~iev~~~~~~~vp~~~~~~ss~k~~~ry~tp~l~~l~~el~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~l 958 (1162)
..||+|+|+.+...++|++|+..+++++..||+||+++++++++.++++++..++.+++.+|...+.++.+.|..+++++
T Consensus 455 ~~gy~iev~~~~~~~vp~~~i~~~s~~~~~rf~tpel~~l~~~l~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~l 534 (840)
T TIGR01070 455 VFGYYIEVTRGQLHLVPAHYRRRQTLKNAERYITPELKEKEDKVLEAEGKILALEKELFEELRELLKKYLEALQEAARAL 534 (840)
T ss_pred CceEEEEEehhhhhcCCcceEEEEeccCceEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999998888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCccceeEcCCCCCCCCcEEEeeccCCccccccCCCCcccccceecCCCCCcceEEEEccCCC
Q 001077 959 AELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMG 1038 (1162)
Q Consensus 959 a~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi~l~~~~~~~~~IITGPNMg 1038 (1162)
|+||||+|||.+|..+ +||||+|++ .+.|.|++||||+++.. + ...|||||+.|++ ..+++||||||||
T Consensus 535 a~lD~l~s~A~~a~~~--~~~~P~~~~-----~~~i~i~~~RHP~le~~-~-~~~~VpNdi~l~~--~~~~~iITGPNmg 603 (840)
T TIGR01070 535 AELDVLANLAEVAETL--HYTRPRFGD-----DPQLRIREGRHPVVEQV-L-RTPFVPNDLEMAH--NRRMLLITGPNMG 603 (840)
T ss_pred HHHHHHHHHHHHHHHC--CCcCceecC-----CCcEEEEeeECHHHHhc-c-CCCeEeeeeecCC--CccEEEEECCCCC
Confidence 9999999999999864 799999975 34699999999999853 2 2479999999985 3689999999999
Q ss_pred ChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCC
Q 001077 1039 GKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRG 1118 (1162)
Q Consensus 1039 GKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRG 1118 (1162)
|||||||||||++|||||||||||++|+|++||+||||||++|+|..|+||||+||.|++.||++||++|||||||||||
T Consensus 604 GKSt~lrqvali~imAq~G~~VPA~~a~i~~~D~Iftrig~~d~i~~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrG 683 (840)
T TIGR01070 604 GKSTYMRQTALIALLAQIGSFVPAESAELPLFDRIFTRIGASDDLASGRSTFMVEMTEAANILHNATENSLVLFDEIGRG 683 (840)
T ss_pred CchHHHHHHHHHHHHHhcCCCccchheEeccccEEEEecCcccchhcCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHH-hhc-ccCceEEEehhhhccccc
Q 001077 1119 TSTSDGQAIAVFSSG-FQS-LAGSQFLSTLFIKCNAVD 1154 (1162)
Q Consensus 1119 Tst~DG~AIA~A~~~-~~~-l~~~~~~~th~~~~~~~~ 1154 (1162)
|+|.||.|||||+++ +.+ ....++++|||+.+..+.
T Consensus 684 T~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~l~ 721 (840)
T TIGR01070 684 TSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTALE 721 (840)
T ss_pred CChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHHHh
Confidence 999999999999998 444 566789999999776664
No 3
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.8e-143 Score=1329.25 Aligned_cols=736 Identities=34% Similarity=0.480 Sum_probs=602.6
Q ss_pred ccCCCHHHHHHHHHHHhCCCeEEEEeeCceEEEecccHHHHhhhcceeeecCC-CCcCCcCcccHhHHHHHHHHcCCeEE
Q 001077 324 LRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGE-QPHCGFPERNFSMNVEKLARKGYRVL 402 (1162)
Q Consensus 324 ~~~lTP~~~Qyw~iK~~~~D~VLfFkvGkFYElf~~DA~i~a~~L~L~~t~g~-~p~~GfPe~sl~~y~~kLV~~GyKVa 402 (1162)
++++||||||||+||++|+|++||||||+|||+|++||.++|++|+|++|+++ +||||||+|+++.|+++||++|||||
T Consensus 3 ~~~~tP~m~qy~~ik~~~~d~llffr~GdfYelf~~DA~~~s~~l~itlT~r~~~pm~gvP~h~~~~yl~~li~~g~kVA 82 (843)
T COG0249 3 KAKLTPMMQQYLEIKAQYPDTLLFFRMGDFYELFFEDAKIAARLLDITLTKRGNIPMAGVPYHALDYYLAKLIELGYKVA 82 (843)
T ss_pred cccCCcHHHHHHHHHHhCCccEEEEecccchhhhHHHHHHHHHhhCceeecCCCCcCCCCccccHHHHHHHHHhCCCeEE
Confidence 56899999999999999999999999999999999999999999999999875 59999999999999999999999999
Q ss_pred EEecCCChHHHHHHhhhcCCCCceeeeeEEEEeeCceeeeccccCCCCCCcEEEEEEecCCCCCCCCCCceEEEEEEEcC
Q 001077 403 VVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVVDVA 482 (1162)
Q Consensus 403 vvEQ~Et~~~~~~r~k~~g~k~~vv~Rev~~ViTpGTl~d~~~l~~~~~~~yllaI~e~~~~~~~~~~~~~~Gva~vD~s 482 (1162)
||||+|+|..+ .++|+|+|+||+||||++|+.++... ++|||+||..... . .||+||+|++
T Consensus 83 iceQ~e~~~~~----------k~~v~R~v~rv~TpGt~~d~~~l~~~-~~n~l~a~~~~~~-------~-~~gla~~dls 143 (843)
T COG0249 83 ICEQLEDPAEA----------KGVVERKVVRVVTPGTLTDEALLSDR-ENNYLAALAIDRD-------G-KVGLAFIDLS 143 (843)
T ss_pred EEEcccChhhh----------cCcceeEEEEEECCCeeecccccccc-ccceEEEEEecCC-------C-EEEEEEEEcc
Confidence 99999999753 24899999999999999999988644 7899999985431 1 7999999999
Q ss_pred CCeEEEEEEcCccchhHHHHHHHccCccEEEecCCCCChHHHHHHHhccCCCccccccCCccccChhhhHHHHHHHHhhc
Q 001077 483 TSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIYNRI 562 (1162)
Q Consensus 483 Tg~~~l~~f~Dd~~~s~L~t~L~~~~P~EIi~~~~~~s~~t~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~ 562 (1162)
||+|++.+|. +..|.+.|.+++|+|||++....+......... +.....+ ..+++...+...+..+|...
T Consensus 144 tGef~~~~~~----~~~l~~~l~r~~p~Eil~~~~~~~~~~~~~~~~-----~~~~~~~-~~~f~~~~~~~~l~~~~~~~ 213 (843)
T COG0249 144 TGEFFVSEFE----REKLLSELKRLQPKELLLSESLLSSTLAEIQKG-----LFVVRLP-ASFFDEDDAEEILSEYFGVR 213 (843)
T ss_pred cCeEEEEEee----HHHHHHHHHhCCCcEEEeccccCchhhhhhhhc-----eeeeecc-hhhcCccHHHHHHHHHhCcc
Confidence 9999999998 678999999999999999987665432221111 1111112 23445555666666666532
Q ss_pred ccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhccccceeecCCCCCccCC
Q 001077 563 TAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMA 642 (1162)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~~~~~ll~~~~f~~~~~~~~~~~~ 642 (1162)
+.. ..+. .....+++|+|+++.|++.++... +.+. ..+....
T Consensus 214 ~l~---------------~~~~--------------~~~~~~~~a~~~ll~Y~~~t~~~~-l~~~--------~~~~~~~ 255 (843)
T COG0249 214 DLD---------------GFGL--------------ISTPLALSAAGALLSYLKDTQKTF-LPHI--------QIIQRYD 255 (843)
T ss_pred ccc---------------cccc--------------ccchHHHHHHHHHHHHHHHhhhcc-cccc--------ccceeec
Confidence 210 0000 013579999999999998766442 2221 1223345
Q ss_pred CCCeeecCHHHHHHccCccccCCCCCcccHHHHHhhhcChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 001077 643 KKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALE 722 (1162)
Q Consensus 643 ~~~~M~LD~~Tl~~LEI~~~~~~g~~~gSL~~lLn~~~T~~GkRlLr~wl~~PL~d~~~I~~R~daVe~l~~~~~~~~~~ 722 (1162)
...+|.||.+|++||||++|.++++.+||||++||+|+|+||+|+|++||++||+|.++|+.|||+|++|.. +..++..
T Consensus 256 ~~~~m~lD~~t~~nLEl~~~~~~~~~~gSL~~~ld~t~T~mG~RlL~~wl~~PL~~~~~I~~Rld~Ve~l~~-~~~l~~~ 334 (843)
T COG0249 256 LEDYMVLDAATRRNLELFSNLRGNGKKGSLFWLLDRTVTPMGSRLLKRWLLQPLLDKEEIEERLDAVEELKD-NPELREK 334 (843)
T ss_pred cCcEEEEcHHHHhcccccccCCCCCCCCcHHHHhccCCCchhHHHHHHHhhCcccCHHHHHHHHHHHHHHHh-hhHHHHH
Confidence 667999999999999999999887889999999999999999999999999999999999999999999986 4567889
Q ss_pred HHHHhCCCCcHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcc-hhhHHhhh
Q 001077 723 FRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTE-SRQLHHIL 801 (1162)
Q Consensus 723 lr~~L~~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~-s~~l~~l~ 801 (1162)
|+..|+++||+||+++|+..+. .+ .+++..+.+.|..+..+...... .. ...+..+.
T Consensus 335 L~~~L~~v~DleRl~~Rl~~~~-~~--------------~rDl~~l~~~l~~~~~i~~~l~~-------~~~~~~l~~~~ 392 (843)
T COG0249 335 LREMLKKVPDLERLLSRLSLGR-AS--------------PRDLLRLRDSLEKIPEIFKLLSS-------LKSESDLLLLL 392 (843)
T ss_pred HHHHHhcCcCHHHHHHHHHcCC-CC--------------hhhHHHHHHHHHHHHHHHHHHhc-------cccchhhhHHh
Confidence 9999999999999999996543 11 23455555555544444332221 11 11122221
Q ss_pred cCCCCchhHHHHHHHHHhhcchhhhcCCCceeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEeCCce
Q 001077 802 TPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDL 881 (1162)
Q Consensus 802 ~~~~~~~~l~~~l~~i~~~id~~~~~~~g~i~~~~G~d~~lD~~~~~l~~i~~~L~~~l~~~~~~l~~~~i~~~~~~~~~ 881 (1162)
.....++.+.++...+..++..+........+++.|+++++|..+...++.++.+.++..+.++..+..+++.......+
T Consensus 393 ~~i~~~~~~~e~~~ll~~~i~~~~~~~~~~~ii~~g~~~eLd~lr~~~~~~~~~i~~le~~~r~~~gi~slki~~n~v~G 472 (843)
T COG0249 393 EDIESLDYLAELLELLETAINEDPPLAVRDGIIKEGYNIELDELRDLLNNAKEWIAKLELEERERTGIKSLKIKYNKVYG 472 (843)
T ss_pred hhhhccccHHHHHHHHHHHhhhcchhhcchhHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhccce
Confidence 11113443456666666666532221111134589999999999999999999888887777888887765544444579
Q ss_pred EEEEccccccCCCCCcEEEeeeccceEEEeChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001077 882 YLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAEL 961 (1162)
Q Consensus 882 y~iev~~~~~~~vp~~~~~~ss~k~~~ry~tp~l~~l~~el~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~L 961 (1162)
|+|+|+......+|.+|+.+++.++..||+|++++++..++.++++++...+.+++.++.+.+..|.+.|+.+..++|+|
T Consensus 473 y~ievt~~~~~~~p~~~ir~qt~kn~~rf~t~el~~~e~~i~~a~~~i~~lE~~l~~~~~~~i~~~~~~l~~~a~aLa~l 552 (843)
T COG0249 473 YYIEVTKSNAKLVPDDYIRRQTLKNAERFTTPELKELEEKLLDAEEKILALEYELFDELREKILAHINELQALAKALAEL 552 (843)
T ss_pred eEEEechhccccCchHHHHHHHHhcceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccceeEcCCCCCCCCcEEEeeccCCccccccCCCCcccccceecCCCCCcceEEEEccCCCChh
Q 001077 962 DALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKS 1041 (1162)
Q Consensus 962 D~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi~l~~~~~~~~~IITGPNMgGKS 1041 (1162)
|||+|||..|. ..+||||+|++. ..|.|++||||+||.. +.. .||||||.|++ +.+++|||||||||||
T Consensus 553 D~l~slA~~a~--~~~y~rP~~~~~-----~~l~i~~gRHPvvE~~-~~~-~fVpNd~~L~~--~~~i~lITGPNM~GKS 621 (843)
T COG0249 553 DVLSSLAEIAA--EQNYVRPEFVDS-----NDLEIKEGRHPVVEAV-LDN-GFVPNDIDLSG--NRRIILITGPNMGGKS 621 (843)
T ss_pred HHHHHHHHHHh--hCCCCCceecCC-----CCEEEEecCcchhhhh-ccC-CcccCceeeCC--CceEEEEECCCCCccH
Confidence 99999999996 448999999862 2399999999999974 333 39999999986 4789999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCCh
Q 001077 1042 TLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTST 1121 (1162)
Q Consensus 1042 T~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst 1121 (1162)
||||||||++|||||||||||++|+|||||+|||||||+|||..|+|||||||.||++||++||++|||||||+||||||
T Consensus 622 TylRQvali~imAQiGsfVPA~~A~i~ivD~IfTRiGa~DDL~~G~STFMvEM~Eta~IL~~AT~~SLvilDEiGRGTsT 701 (843)
T COG0249 622 TYLRQVALIVILAQIGSFVPAEKARIGIVDRIFTRIGAADDLASGRSTFMVEMLETANILDNATERSLVILDEIGRGTST 701 (843)
T ss_pred HHHHHHHHHHHHHHcCCCeeHHHccccccceeeecccccchhhccccHHHHHHHHHHHHHHhCCCCcEEEEecccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhc--ccCceEEEehhhhccc-------ccceEeee
Q 001077 1122 SDGQAIAVFSSGFQS--LAGSQFLSTLFIKCNA-------VDCFQLTI 1160 (1162)
Q Consensus 1122 ~DG~AIA~A~~~~~~--l~~~~~~~th~~~~~~-------~~~~~~~~ 1160 (1162)
+||+|||||++++.. ..+.++++|||+-|+. |.||.+.+
T Consensus 702 ~DGlaIA~Av~eyL~~~~~~~tLFATHy~ELt~l~~~~~~v~N~h~~~ 749 (843)
T COG0249 702 YDGLAIAWAVLEYLHEKIGCRTLFATHYHELTELEEKLPQVKNYHMSA 749 (843)
T ss_pred chhHHHHHHHHHHHHhccCceEEEeccHHHHHHhhhcccccceeEEEE
Confidence 999999999999544 3777999999996654 55666554
No 4
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=100.00 E-value=1.1e-139 Score=1322.66 Aligned_cols=722 Identities=32% Similarity=0.469 Sum_probs=603.8
Q ss_pred ccCCCHHHHHHHHHHHhCCCeEEEEeeCceEEEecccHHHHhhhcceeeecCC------CCcCCcCcccHhHHHHHHHHc
Q 001077 324 LRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKGE------QPHCGFPERNFSMNVEKLARK 397 (1162)
Q Consensus 324 ~~~lTP~~~Qyw~iK~~~~D~VLfFkvGkFYElf~~DA~i~a~~L~L~~t~g~------~p~~GfPe~sl~~y~~kLV~~ 397 (1162)
.+++||||||||+||++|||+|||||||||||||++||+++|++|||++|+++ +||||||+|+++.|+++||++
T Consensus 5 ~~~~TP~~~Qy~~iK~~~~D~ilffr~GdFYElf~eDA~~~s~~L~i~lt~r~~~~~~~~pm~GvP~h~~~~yl~kLv~~ 84 (854)
T PRK05399 5 MSKLTPMMQQYLEIKAQYPDALLFFRMGDFYELFFEDAKKASRLLDITLTKRGKSAGEPIPMAGVPYHAAEGYLAKLVKK 84 (854)
T ss_pred cCCCCHHHHHHHHHHhhCCCEEEEEEcCCEEEEeHhhHHHHHHHhCeEEeeccCCCCCCCCEecCcHHHHHHHHHHHHHC
Confidence 35799999999999999999999999999999999999999999999999753 599999999999999999999
Q ss_pred CCeEEEEecCCChHHHHHHhhhcCCCCceeeeeEEEEeeCceeeeccccCCCCCCcEEEEEEecCCCCCCCCCCceEEEE
Q 001077 398 GYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGIC 477 (1162)
Q Consensus 398 GyKVavvEQ~Et~~~~~~r~k~~g~k~~vv~Rev~~ViTpGTl~d~~~l~~~~~~~yllaI~e~~~~~~~~~~~~~~Gva 477 (1162)
|||||||||+|||..+ .++|+|+||+||||||+++++++.. ..++||+||.+. ...||+|
T Consensus 85 GyKVaI~EQ~e~~~~~----------k~~v~R~v~~i~TpGT~~~~~~l~~-~~~~yl~ai~~~---------~~~~Gia 144 (854)
T PRK05399 85 GYKVAICEQVEDPATA----------KGPVKREVVRIVTPGTVTDEALLDE-KQNNYLAAIAQD---------GGGYGLA 144 (854)
T ss_pred CCEEEEEEecCChhhc----------CCccceEEEEEECCCeeecccccCC-CCCcEEEEEEEC---------CCeEEEE
Confidence 9999999999998642 2599999999999999999998864 468999999864 2369999
Q ss_pred EEEcCCCeEEEEEEcCccchhHHHHHHHccCccEEEecCCCCChHHHHHHHhccCCCccccccCCccccChhhhHHHHHH
Q 001077 478 VVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKN 557 (1162)
Q Consensus 478 ~vD~sTg~~~l~~f~Dd~~~s~L~t~L~~~~P~EIi~~~~~~s~~t~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~ 557 (1162)
|+|++||+|++++| .+++|++.|.+++|+|||++.+..+.. +... ..... ..+.. .|+.+.+.+.+.+
T Consensus 145 ~~D~stg~~~~~~~----~~~~L~~~l~~~~P~Eil~~~~~~~~~----~~~~--~~~~~-~~~~~-~f~~~~~~~~l~~ 212 (854)
T PRK05399 145 YLDLSTGEFRVTEL----DEEELLAELARLNPAEILVPEDFSEDE----LLLL--RRGLR-RRPPW-EFDLDTAEKRLLE 212 (854)
T ss_pred EEECCCCeEEEEEE----cHHHHHHHHHhcCCcEEEEcCCcchhh----Hhhc--cccce-ecccc-ccChHHHHHHHHH
Confidence 99999999999999 367899999999999999987654432 1111 11111 11212 2366666677777
Q ss_pred HHhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhccccceeecCCCC
Q 001077 558 IYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSG 637 (1162)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~~~~~ll~~~~f~~~~~~~ 637 (1162)
+|...+ + . .+ .. ....+++|+|+++.||+.+.... +.++..+..
T Consensus 213 ~f~~~~---~------------~-----~~--------~~--~~~~~~~a~~all~Yl~~~~~~~-~~~~~~~~~----- 256 (854)
T PRK05399 213 QFGVAS---L------------D-----GF--------GV--DLPLAIRAAGALLQYLKETQKRS-LPHLRSPKR----- 256 (854)
T ss_pred HhCcCC---c------------c-----cc--------CC--CCHHHHHHHHHHHHHHHHhchhh-hhccCCCEE-----
Confidence 764211 0 0 00 00 23578999999999999887532 333333332
Q ss_pred CccCCCCCeeecCHHHHHHccCccccCCCCCcccHHHHHhhhcChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhcCCc
Q 001077 638 FGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQ 717 (1162)
Q Consensus 638 ~~~~~~~~~M~LD~~Tl~~LEI~~~~~~g~~~gSL~~lLn~~~T~~GkRlLr~wl~~PL~d~~~I~~R~daVe~l~~~~~ 717 (1162)
+...++|.||++|++|||||.|.+ |+.+||||++||||+|+||+|+||+||++||+|+++|++|||+|++|.+ +.
T Consensus 257 ---~~~~~~m~lD~~tl~~Lei~~~~~-~~~~gSL~~~ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~-~~ 331 (854)
T PRK05399 257 ---YEESDYLILDAATRRNLELTENLR-GGRKNSLLSVLDRTVTAMGGRLLRRWLHRPLRDREAIEARLDAVEELLE-DP 331 (854)
T ss_pred ---ECCCCEEEcCHHHHHhccCCccCC-CCCCCcHHHHhccCCCcHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHh-CH
Confidence 345679999999999999999875 5667899999999999999999999999999999999999999999995 66
Q ss_pred hhHHHHHHHhCCCCcHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhH
Q 001077 718 PFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQL 797 (1162)
Q Consensus 718 ~~~~~lr~~L~~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l 797 (1162)
..+..++..|+++||+||+++|+..+. . ..+++..+..+|..+..+.+ .+....+..+
T Consensus 332 ~~~~~l~~~L~~i~Dlerll~ri~~~~-~--------------~~~dl~~l~~~l~~~~~l~~-------~l~~~~~~~l 389 (854)
T PRK05399 332 LLREDLRELLKGVYDLERLLSRIALGR-A--------------NPRDLAALRDSLEALPELKE-------LLAELDSPLL 389 (854)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhcC-C--------------CHHHHHHHHHHHHHHHHHHH-------HHHhcCcHHH
Confidence 778899999999999999999996421 1 12355555555554444332 2333334555
Q ss_pred HhhhcCCCCchhHHHHHHHHHhhcchhhh--cCCCceeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEE
Q 001077 798 HHILTPGKGLPAIVSILKHFKDAFDWVEA--NNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYV 875 (1162)
Q Consensus 798 ~~l~~~~~~~~~l~~~l~~i~~~id~~~~--~~~g~i~~~~G~d~~lD~~~~~l~~i~~~L~~~l~~~~~~l~~~~i~~~ 875 (1162)
..+.. .++.+.++++.|..+||.+.. ..++.+ +++|++++||++++.++++++.+.++.++.++.++.+++++.
T Consensus 390 ~~l~~---~l~~~~~l~~~i~~~i~~~~~~~~~~~~~-i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 465 (854)
T PRK05399 390 AELAE---QLDPLEELADLLERAIVEEPPLLIRDGGV-IADGYDAELDELRALSDNGKDWLAELEARERERTGISSLKVG 465 (854)
T ss_pred HHHHh---hcccHHHHHHHHHHHHccCCchhcccCCE-ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEE
Confidence 55543 245677777888888875321 123444 489999999999999999999999998888888888888877
Q ss_pred EeCCceEEEEccccccCCCCCcEEEeeeccceEEEeChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 001077 876 TIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMV 955 (1162)
Q Consensus 876 ~~~~~~y~iev~~~~~~~vp~~~~~~ss~k~~~ry~tp~l~~l~~el~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~ 955 (1162)
..+..||+|+|+......+|++|+..+++++..||+||+++++++++.++++++...+.+++.+++..+.++...|..++
T Consensus 466 ~~~~~gy~iev~~~~~~~vp~~~~~~~s~~~~~rf~t~~l~~l~~~l~~~~~~~~~~e~~i~~~l~~~i~~~~~~l~~~~ 545 (854)
T PRK05399 466 YNKVFGYYIEVTKANLDKVPEDYIRRQTLKNAERYITPELKELEDKILSAEEKALALEYELFEELREEVAEHIERLQKLA 545 (854)
T ss_pred EcCceeEEEEEEcchhhhCChhhhheeeccCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778999999998888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccceeEcCCCCCCCCcEEEeeccCCccccccCCCCcccccceecCCCCCcceEEEEcc
Q 001077 956 AATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGP 1035 (1162)
Q Consensus 956 ~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi~l~~~~~~~~~IITGP 1035 (1162)
+++|+||||+|||.+|..+ +||||+|++ .+.|.|++||||++|.. +....|||||+.|++ ..+++|||||
T Consensus 546 ~~la~lD~l~s~A~~a~~~--~~~~P~~~~-----~~~l~i~~~rHP~le~~-~~~~~~vpnd~~l~~--~~~~~iiTGp 615 (854)
T PRK05399 546 KALAELDVLASLAEVAEEN--NYVRPEFTD-----DPGIDIEEGRHPVVEQV-LGGEPFVPNDCDLDE--ERRLLLITGP 615 (854)
T ss_pred HHHHHHHHHHHHHHHHHHC--CccccEEeC-----CCCEEEEeccCcEEecc-cCCCceEecceeeCC--CCcEEEEECC
Confidence 9999999999999999854 799999985 34699999999999863 234579999999984 4689999999
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCCCCcEEEEcCC
Q 001077 1036 NMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDEL 1115 (1162)
Q Consensus 1036 NMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDEL 1115 (1162)
||||||||||||||+||||||||||||++|+|++||+||||||++|+|..|+||||+||.|++.||++||++|||||||+
T Consensus 616 N~~GKSt~lr~v~l~~ilAq~G~~VPa~~a~i~~~d~I~triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~ 695 (854)
T PRK05399 616 NMAGKSTYMRQVALIVLLAQIGSFVPAESARIGIVDRIFTRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDEI 695 (854)
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCceeccceEecccCeeeeccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHh-hcc-cCceEEEehhhhccccc
Q 001077 1116 GRGTSTSDGQAIAVFSSGF-QSL-AGSQFLSTLFIKCNAVD 1154 (1162)
Q Consensus 1116 GRGTst~DG~AIA~A~~~~-~~l-~~~~~~~th~~~~~~~~ 1154 (1162)
||||+|.||.|||||++++ .+. ...++++|||+.+..+.
T Consensus 696 GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~~l~ 736 (854)
T PRK05399 696 GRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELTELE 736 (854)
T ss_pred CCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHHHHh
Confidence 9999999999999999984 444 36799999998765553
No 5
>KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair]
Probab=100.00 E-value=4.6e-134 Score=1149.07 Aligned_cols=767 Identities=30% Similarity=0.433 Sum_probs=597.1
Q ss_pred cCCCHHHHHHHHHHHhCCCeEEEEeeCceEEEecccHHHHhhhccee-eecCCCCcCCcCcccHhHHHHHHHHcCCeEEE
Q 001077 325 RNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQ-YMKGEQPHCGFPERNFSMNVEKLARKGYRVLV 403 (1162)
Q Consensus 325 ~~lTP~~~Qyw~iK~~~~D~VLfFkvGkFYElf~~DA~i~a~~L~L~-~t~g~~p~~GfPe~sl~~y~~kLV~~GyKVav 403 (1162)
.++||++|||.++|++|+|+||..+|||.|.+|++||+|++++|||. ++.+++..|.||.++++.|++|||++||||||
T Consensus 160 s~yTPLeqQ~~elK~~h~d~VL~ievGYkyRfFgeDAeiasrvLgIych~dhnFmtaS~P~~Rl~vHleRLv~~g~KVaV 239 (1070)
T KOG0218|consen 160 SKYTPLEQQVKELKMHHRDKVLVIEVGYKYRFFGEDAEIASRVLGIYCHNDHNFMTASFPDVRLNVHLERLVHHGLKVAV 239 (1070)
T ss_pred cccCcHHHHHHHHHhhCCceEEEEEecceEEeecccHHHHHHhhceEEEeccceeeccCCcchhhHHHHHHHhcCceEEE
Confidence 47999999999999999999999999999999999999999999996 57788999999999999999999999999999
Q ss_pred EecCCChHHHHHHhhhcCCCCceeeeeEEEEeeCceeeecc--ccC----CCCCCcEEEEEEecCCCCCCCCCCceEEEE
Q 001077 404 VEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGE--LLS----ANPDASYLMALTESNQSPASQSTDRCFGIC 477 (1162)
Q Consensus 404 vEQ~Et~~~~~~r~k~~g~k~~vv~Rev~~ViTpGTl~d~~--~l~----~~~~~~yllaI~e~~~~~~~~~~~~~~Gva 477 (1162)
|+|+||++.+. ...+++.+|.|+|++|||+||+.++. .+. -+..++|++|+.+.........+...||+.
T Consensus 240 VkQtETAAiKs----~gasRsslF~RklsavyTKaTl~eds~~~~r~e~~~~~~ssfllcv~dn~~ksk~ksg~v~vgli 315 (1070)
T KOG0218|consen 240 VKQTETAAIKS----HGASRSSLFERKLSAVYTKATLGEDSTFVLRGERILGDTSSFLLCVRDNVHKSKEKSGVVKVGLI 315 (1070)
T ss_pred EeehhhHHHHh----cCCcccchHHHHHHHHhhhhhhccccccccchhhhcCCcceEEEEEehhhhhhhhhcCceEEEEE
Confidence 99999987632 22367889999999999999998654 221 122578999998755443334567889999
Q ss_pred EEEcCCCeEEEEEEcCccchhHHHHHHHccCccEEEecCCCCChHHHHHHHhc-cCCCccccccCCccccChhhhH----
Q 001077 478 VVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRH-TRNPLVNDLVPLSEFWDAETTV---- 552 (1162)
Q Consensus 478 ~vD~sTg~~~l~~f~Dd~~~s~L~t~L~~~~P~EIi~~~~~~s~~t~~~l~~~-~~~~~~~~~~~~~~f~~~~~~~---- 552 (1162)
-|.++||++.+++|.|+..++.|+|.|..++|.|+|++. .+++.+...+.+. .+.. ......| +-+.++
T Consensus 316 gVqlstGevVydeFqdnf~rseLqtrisslqP~ElLl~~-~ls~qt~all~~~~Vsve----~~~~rv~-r~~naV~q~i 389 (1070)
T KOG0218|consen 316 GVQLSTGEVVYDEFQDNFARSELQTRISSLQPIELLLNT-DLSPQTVALLFKDNVSVE----LIHKRVY-RLENAVVQAI 389 (1070)
T ss_pred EEecCCCcEehHhhhhhHHHHHHHHHHhccCcceeecCC-CCcHHHHHHHHhcccchh----hhhhhhh-hchhHHHHHH
Confidence 999999999999999999999999999999999999985 4677887766542 1111 1111111 111111
Q ss_pred ----HHHHHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhcccc
Q 001077 553 ----LEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFA 628 (1162)
Q Consensus 553 ----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~~~~~ll~~~ 628 (1162)
+.+.++|..... ..+....|+ +++.. ..-.+|.|+.++.||.+..+++ ++..+
T Consensus 390 kla~e~~q~f~~~k~~--------------l~gs~ii~l------i~nl~--~psvic~la~~is~lkefnlE~-~l~~p 446 (1070)
T KOG0218|consen 390 KLANEKIQNFEDDKEM--------------LEGSEIICL------IMNLS--HPSVICLLAKLISHLKEFNLEQ-VLLIP 446 (1070)
T ss_pred HHHHHHHhhhhhhhhh--------------hhhhhhhhh------hhcCC--CchHHHHHHHHHHHHHHhchHH-heecc
Confidence 112222221110 001111111 22211 1224555999999999987765 44444
Q ss_pred ceeecCCCCCccCCCCCeeecCHHHHHHccCccccCCCCCcccHHHHHhhhcChHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 001077 629 KFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDA 708 (1162)
Q Consensus 629 ~f~~~~~~~~~~~~~~~~M~LD~~Tl~~LEI~~~~~~g~~~gSL~~lLn~~~T~~GkRlLr~wl~~PL~d~~~I~~R~da 708 (1162)
+|.. .+....+|.|+++||++||||.|+.+|+.+|||||+||||.|.||.||||+|+.+||+|...|++|+||
T Consensus 447 sf~s-------~~ss~e~Mtls~ntLq~Leif~nqtd~~~kGSLfwvldhT~TsfG~RmLr~WvtkPLvd~~~I~eRLDA 519 (1070)
T KOG0218|consen 447 SFYS-------PFSSKEHMTLSPNTLQSLEIFTNQTDGSEKGSLFWVLDHTRTSFGLRMLREWVTKPLVDVHQIEERLDA 519 (1070)
T ss_pred cccC-------cccccceeeechhhhhceeeeeecCCCCcccceEEEeccchhHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 5432 234566999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-c-CCchhHHHHHHHhCCCCcHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHH-
Q 001077 709 VAGLR-G-VNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSL- 785 (1162)
Q Consensus 709 Ve~l~-~-~~~~~~~~lr~~L~~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l- 785 (1162)
|+++. . .|...+..+++.|.++|||+|-|.||+.+....+ ..+++ .++.++.+...++.+.......
T Consensus 520 VeeitshssnS~vf~si~~~l~rlpDl~rgL~rIy~~tCtp~---~eff~-------vlk~iy~a~s~fq~~~~~~~~~~ 589 (1070)
T KOG0218|consen 520 VEEITSHSSNSIVFESINQMLNRLPDLLRGLNRIYYGTCTPR---KEFFF-------VLKQIYSAVSHFQMHQSYLEHFK 589 (1070)
T ss_pred HHHHHhcccchHHHHHHHHHHHhCcHhHhhHHHHhcccCCcH---HHHHH-------HHHHHHHHHHHHHHHhhhhhhhc
Confidence 99993 2 2334677899999999999999999987643211 11111 1222222222222111000000
Q ss_pred -HHHHhhcchhhHHhhhcCCCCchhHHHHHHHHHhhcchhhhcCCCc--eeeCCCCChhHHHHHHH---HHHH---HHHH
Q 001077 786 -GAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGR--IIPHGGVDMDYDSACKK---VKEI---EASL 856 (1162)
Q Consensus 786 -~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~i~~~id~~~~~~~g~--i~~~~G~d~~lD~~~~~---l~~i---~~~L 856 (1162)
..--...+|.+|+.+..... -|.+.+.+.++..+++..++.+... +...-.-.|.++...+. ++++ ...|
T Consensus 590 ~s~~~s~~qS~LLrrlisel~-~p~~~s~~~hfL~mln~~aa~~gnk~d~fkd~snfpl~~e~~di~~virE~~ms~~~~ 668 (1070)
T KOG0218|consen 590 SSDGRSGKQSPLLRRLISELN-EPLSTSQLPHFLTMLNVSAAMEGNKDDQFKDFSNFPLYDESEDIIKVIRESEMSRSQL 668 (1070)
T ss_pred cccccchhccHHHHHHHHHhc-CccccccHHHHHHHhhHHHHhhCChHHhhhhhccCcchhhhhhHHHHHHHHHHHHHHH
Confidence 00011235667776653211 1555566666767776544432211 11011113445544432 2332 2357
Q ss_pred HHHHHHHHHHhCCCCceEEEeCCceEEEEccccccCCCCCcEEEeeeccceEEEeChHHHHHHHHhHHHHHHHHHHHHHH
Q 001077 857 TKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSI 936 (1162)
Q Consensus 857 ~~~l~~~~~~l~~~~i~~~~~~~~~y~iev~~~~~~~vp~~~~~~ss~k~~~ry~tp~l~~l~~el~~~~~~~~~~~~~i 936 (1162)
.++|+++|+.+..+++.|..+++..|+|||+.+..+++|.+|+..+++|...||+||+++++..+|..+++.+.......
T Consensus 669 ~~hLaeiRk~Lk~pnlef~~vsgv~flIEvkns~~kkiP~dWiKvnsTk~vsRfhtP~iq~~l~eL~~~~e~L~i~sea~ 748 (1070)
T KOG0218|consen 669 KEHLAEIRKYLKRPNLEFRQVSGVDFLIEVKNSQIKKIPDDWIKVNSTKMVSRFHTPRIQKLLQELEYYKELLIIESEAQ 748 (1070)
T ss_pred HHHHHHHHHHhcCCCceeEEecCeeEEEEecccccccCCccceeeccceeeeecCCHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 77999999999999999999999999999999988999999999999999999999999999999999999988888889
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeEcCCCCCCCCcEEEeeccCCccccccCCCCcccc
Q 001077 937 LQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVP 1016 (1162)
Q Consensus 937 l~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fVP 1016 (1162)
+..++.+|.+|+..|+.+...+|.+||++|||.+|.+ .+||||+|+++ ...|.|++||||++|. +....|||
T Consensus 749 ~~sFL~kiSehYtelrkat~~LatlDCi~SlA~~s~n--~nYvRPtfvd~----~~eI~ikngRhPvIe~--Ll~d~fVP 820 (1070)
T KOG0218|consen 749 YKSFLNKISEHYTELRKATLNLATLDCILSLAATSCN--VNYVRPTFVDG----QQEIIIKNGRHPVIES--LLVDYFVP 820 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCccCcccccc----hhhhhhhcCCCchHHH--HhhhccCC
Confidence 9999999999999999999999999999999999984 58999999963 2468999999999996 23446999
Q ss_pred cceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHH
Q 001077 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSE 1096 (1162)
Q Consensus 1017 NDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~E 1096 (1162)
||+.|.. ++.+++|||||||||||.|+|||||+.||||+||||||++|+|+|||.|||||||+|||..|.||||+||.+
T Consensus 821 Ndi~ls~-egerc~IITGPNMGGKSsyIrQvALitIMAQiGsfVPAeea~l~IfdgvltRmGAsDnI~~grSTFm~Emld 899 (1070)
T KOG0218|consen 821 NDIMLSP-EGERCNIITGPNMGGKSSYIRQVALITIMAQIGSFVPAEEARLSIFDGVLTRMGASDNIINGRSTFMVEMLD 899 (1070)
T ss_pred CcceecC-CCceEEEEeCCCCCCchHHHHHHHHHHHHHHhcCccchHHhhhhHHhhHHHhhccccccccchhHHHHHHHH
Confidence 9999986 467999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHH-hhcccCc-eEEEehhhhcc
Q 001077 1097 TALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSG-FQSLAGS-QFLSTLFIKCN 1151 (1162)
Q Consensus 1097 ta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~-~~~l~~~-~~~~th~~~~~ 1151 (1162)
|+.||++||++||||||||||||||+||.|||||+.+ |.++..| +.+.|||--+.
T Consensus 900 t~eil~kat~~SlvilDElGRGTsThDGiAIsYAtL~yf~~~~k~l~LFvTHfP~l~ 956 (1070)
T KOG0218|consen 900 TLEILKKATKRSLVILDELGRGTSTHDGIAISYATLKYFSELSKCLILFVTHFPMLG 956 (1070)
T ss_pred HHHHHHhcccchhhhhHhhcCCCccccchhHHHHHHHHHHHhhceeEEeeecCcchh
Confidence 9999999999999999999999999999999999999 4444444 66699998553
No 6
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=1.9e-90 Score=808.84 Aligned_cols=737 Identities=27% Similarity=0.365 Sum_probs=546.0
Q ss_pred CCCHHHHHHHHHHHhCC---CeEEEEeeCceEEEecccHHHHhhhc-----ceeeecC----CCCcCCcCcccHhHHHHH
Q 001077 326 NLSEGQKQWWEFKSKHM---DKVIFFKMGKFYELFEMDAHVGAKEL-----DLQYMKG----EQPHCGFPERNFSMNVEK 393 (1162)
Q Consensus 326 ~lTP~~~Qyw~iK~~~~---D~VLfFkvGkFYElf~~DA~i~a~~L-----~L~~t~g----~~p~~GfPe~sl~~y~~k 393 (1162)
+-+.+++-|..+=..-| ++|.||..|+||..|++||..+|+.- -++++.. +.-.|.+--..|...++-
T Consensus 11 ~d~~~~~~f~~f~~~l~~p~~tvr~fdrge~ytv~geDa~~va~~v~kt~~~~k~l~~~~~~~~~~v~ls~~~~e~~vr~ 90 (902)
T KOG0219|consen 11 KDEAADRNFLKFYEGLPKPTTTVRFFDRGEYYTVHGEDAEFVARNVYKTQAVIKTLSPDNAKNTKEVSLSKGNFEKVVRE 90 (902)
T ss_pred ccchhHHHHHHHHhcCCCCCceEEEecCcceEEEeccchhhhhhhhhhhhhhheecCCcccccceEEEecHHHHHHHHHH
Confidence 44566777777665544 79999999999999999999999864 2333321 223345555677788865
Q ss_pred H-HHcCCeEEEEecCCChHHHHHHhhhcCCCCceeeeeEEEEeeCceeeeccc-cCCCCC-Cc---EEEEEEecCCCCCC
Q 001077 394 L-ARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL-LSANPD-AS---YLMALTESNQSPAS 467 (1162)
Q Consensus 394 L-V~~GyKVavvEQ~Et~~~~~~r~k~~g~k~~vv~Rev~~ViTpGTl~d~~~-l~~~~~-~~---yllaI~e~~~~~~~ 467 (1162)
| +..+|+|.+++--|+ +++++.==+||.+.+.+. +..+.+ +. |+...+-.
T Consensus 91 ~l~~~~~~Ve~y~~~~~------------------~w~l~~~~sPGN~~~fedll~~~~~v~is~~~~~v~~~~------ 146 (902)
T KOG0219|consen 91 LLLVLRYRVEVYSSNQG------------------DWKLTKRGSPGNLVQFEDLLFSNNDVPISIISLIVKHPG------ 146 (902)
T ss_pred HHHHhccceEEeecCcc------------------ceeEEecCCCCcHHHHHHHHcccccchhhhhheeEEeec------
Confidence 5 589999999975322 233344447999876542 222111 11 22111211
Q ss_pred CCCCceEEEEEEEcCCCeEEEEEEcCccchhHHHHHHHccCccEEEecCCCCChHHHHHHHhccCCCccccccCCccccC
Q 001077 468 QSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWD 547 (1162)
Q Consensus 468 ~~~~~~~Gva~vD~sTg~~~l~~f~Dd~~~s~L~t~L~~~~P~EIi~~~~~~s~~t~~~l~~~~~~~~~~~~~~~~~f~~ 547 (1162)
..+...+|+|++|++.-.+++.+|.||..+++|+..|.+++|+|+|++......+..++..-..+...........+|-+
T Consensus 147 ~~~~~~vgv~~~d~~~~k~~~~ef~Dn~~~snle~~l~~lg~kEcll~~~~~~~~~~kl~~~~~r~g~~~t~~~~~e~~~ 226 (902)
T KOG0219|consen 147 VDGQRRVGVAFVDTINVKIGLSEFVDDDSFSNLEALLIQLGPKECVLPEGSVAGEMKKLRNIIDRCGVLITLRKKSESSW 226 (902)
T ss_pred cCCCceeEEEEechhheeeehhhhcCcHHHHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhccCeEEEEecccchhH
Confidence 23467899999999999999999999999999999999999999999943333333333222233333333333334321
Q ss_pred hhhhHHHHHHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhccc
Q 001077 548 AETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRF 627 (1162)
Q Consensus 548 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~~~~~ll~~ 627 (1162)
...+..+...+.. . .....+|+ + ...++++++.+++.||.- .-+.. ..
T Consensus 227 -kdv~~~l~~~l~~---~----------------~~~~~~~e----~-----~~q~a~~~~~~~i~yl~~-~~e~~--~s 274 (902)
T KOG0219|consen 227 -KDVEQDLNRLLKS---Q----------------EHAAYLPE----L-----ELQLAMSALSALIKYLDL-ENEYS--NS 274 (902)
T ss_pred -HHHHHHHHhcccc---h----------------hhhccchH----H-----HhHHHHHHHHHHHHHHhh-ccccc--cc
Confidence 1122222222210 0 00112232 2 246899999999999942 22221 22
Q ss_pred cceeecCCCCCccCCCCCeeecCHHHHHHccCccccCC-CCCcccHHH-HHhhhcChHHHHHHHHHhhCCCCCHHHHHHH
Q 001077 628 AKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRS-GDSSGTLYA-QLNHCVTAFGKRLLRTWLARPLYNSGLIRER 705 (1162)
Q Consensus 628 ~~f~~~~~~~~~~~~~~~~M~LD~~Tl~~LEI~~~~~~-g~~~gSL~~-lLn~~~T~~GkRlLr~wl~~PL~d~~~I~~R 705 (1162)
+++++. ......+|.||.+|.++|++|+...+ -....+|.. +||||.|++|.|||++|+.+||+|+..|++|
T Consensus 275 ~~~ei~------~~~~~~~m~ld~~av~alnlf~~~~~~~~~s~~L~~~~LN~c~t~~G~rll~~w~~qpL~~~~ri~~r 348 (902)
T KOG0219|consen 275 GKYELT------NHGLHQFMRLDSAAVRALNLFPLPYNNPEKSNNLALSLLNHCKTLQGERLLRQWLKQPLRDIDRINER 348 (902)
T ss_pred ceEEEe------ecchHHHhhHHHHHHHHHhhcCCCCCCccccchhhHHHHhhcccccchhhhhhhhhcchHHHHHHHHH
Confidence 344443 23456799999999999999985432 233457887 9999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchhHHHHH-HHhCCCCcHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001077 706 QDAVAGLRGVNQPFALEFR-KALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSS 784 (1162)
Q Consensus 706 ~daVe~l~~~~~~~~~~lr-~~L~~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~ 784 (1162)
+|.|+.|+. +...++.++ +.|..+||+-|+..|+. .+ + ..++..+++....+..+.+.+.+
T Consensus 349 ~d~v~~l~~-~~~~rq~L~~~lL~~~pdi~rl~~~l~-~~----~------------L~d~~r~yq~~~~l~~~~~~l~~ 410 (902)
T KOG0219|consen 349 HDLVEALVE-DAEIRQKLRDDLLRRIPDISRLARRLM-KA----N------------LQDVNRIYQAAKLLPTVVQVLIS 410 (902)
T ss_pred hhhHHHHHh-hhHHHHHHHHHHhhcChhHHHhhhhhh-hc----c------------hHHHHHHHHHHHHhHHHHHHHHh
Confidence 999999986 455566554 57889999999999984 11 1 11222222222222333222222
Q ss_pred HHHHHhhcchhhHH-hhhcCCCCchhHHHHHHHHHhhcchhhhcCCCceeeCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 001077 785 LGAILENTESRQLH-HILTPGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQ 863 (1162)
Q Consensus 785 l~~~l~~~~s~~l~-~l~~~~~~~~~l~~~l~~i~~~id~~~~~~~g~i~~~~G~d~~lD~~~~~l~~i~~~L~~~l~~~ 863 (1162)
+ .... ..++. .+.. ....+.++...+...+|++++.+ +.++++..+|+++-++++.+++++..+.++.++.
T Consensus 411 ~---~~~~-~~ll~~~l~~---~~~~~~kf~~~ve~t~D~da~ee-~ey~VR~eFdeeL~eLrq~LdeL~~~m~~~hkrv 482 (902)
T KOG0219|consen 411 L---SESH-NRLLKSPLTE---HLKKLEKFQEMVETTVDLDAEEE-NEYRVRVDFDEELQELREKLDELERKMEKLHKKV 482 (902)
T ss_pred h---hhhh-hhhhhhhhhh---hhhhHHHHHHHHHHHhhHhHHhc-CcEEEecccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1110 01111 1111 12345666777788899877765 8888899999999999999999999999888777
Q ss_pred HHHhCCC---CceEEEeCCceEEEEccccccCCC--CCcEEEeeeccceEEEeChHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001077 864 RKLLGDT---SITYVTIGKDLYLLEVPESLRGSV--PRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQ 938 (1162)
Q Consensus 864 ~~~l~~~---~i~~~~~~~~~y~iev~~~~~~~v--p~~~~~~ss~k~~~ry~tp~l~~l~~el~~~~~~~~~~~~~il~ 938 (1162)
...++.- +++.-.....||++.+.....+.+ .++|+..++.||.++|+|.+|..|++++.+.+.++...+..+.+
T Consensus 483 ~~dl~~D~~kklkLe~~~~~G~~~RlTr~e~~~LR~~k~y~eLstqK~GV~FTtk~L~slN~e~~~~qk~Y~~~Q~~ivr 562 (902)
T KOG0219|consen 483 SADLGLDPKKQLKLENSAQFGWYFRVTRKEEKVLRKKKNYTELSTQKGGVKFTTKKLSSLNDEFMSLQKEYDEAQNEIVR 562 (902)
T ss_pred HhhcCCCcccceeeeccchhheeeeeeehhhhHhhccCCceEEEEeeCcEEEEhhhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 6666542 355555566789988875433322 36899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeEcCCCCCCCCcEEEeeccCCccccccCCCCcccccc
Q 001077 939 RLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPND 1018 (1162)
Q Consensus 939 ~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fVPND 1018 (1162)
+++.....|.+.+..+.+.+|.|||+.|||++|.....+|+||.+.+.+ ...+.++++||||+|.+ ..-.|||||
T Consensus 563 evikia~tY~Ppleal~~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~g---s~rl~l~~~rHp~lE~Q--d~~~fIpNd 637 (902)
T KOG0219|consen 563 EIIKIAATYTPPLEALNQVLAHLDVFVSFAHAATVAPIPYVRPKLLPLG---SKRLELKQSRHPVLEGQ--DEIPFIPND 637 (902)
T ss_pred HHHHHHhhcCCcHHHHHHHHHHHHhheeehhhcccCCCCccCccccccc---hhHHHHHhcccchhhcc--ccCCCCCCc
Confidence 9999999999999999999999999999999998778899999999854 33688999999999974 344799999
Q ss_pred eecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHH
Q 001077 1019 ITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETA 1098 (1162)
Q Consensus 1019 i~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta 1098 (1162)
+.|.. +..+++|||||||||||||+||+|++++||||||||||++|.|+++|.|++|+||+|++++|.||||+||.||+
T Consensus 638 v~le~-~~~~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~IvD~Il~RVGA~D~q~kG~STFM~Emleta 716 (902)
T KOG0219|consen 638 VVLEK-GKCRMLIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCESATISIVDGILTRVGAGDSQLKGISTFMAEMLETA 716 (902)
T ss_pred ccccc-CCceEEEEeCCCcCccchhhhhhhHHHHHHHhCCceehhhcCCchhhHHHhhhccchhhhcchHHHHHHHHHHH
Confidence 99974 45789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHH--hhcccCceEEEehhhhcccccce
Q 001077 1099 LMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSG--FQSLAGSQFLSTLFIKCNAVDCF 1156 (1162)
Q Consensus 1099 ~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~--~~~l~~~~~~~th~~~~~~~~~~ 1156 (1162)
.||+.||++||||||||||||||+||++|||||.+ +....+-++++|||+-|..|+.+
T Consensus 717 ~Ilr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~~ki~cf~lfATHfhElt~lae~ 776 (902)
T KOG0219|consen 717 SILRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIATKIGCFCLFATHFHELTKLAEQ 776 (902)
T ss_pred HHHHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhhh
Confidence 99999999999999999999999999999999999 33444567889999988877654
No 7
>KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=3e-85 Score=753.61 Aligned_cols=638 Identities=24% Similarity=0.318 Sum_probs=488.4
Q ss_pred CCcEEEEEEecCCCCCCCCCCceEEEEEEEcCCCeEEEEEEcCccchhHHHHHHHccCccEEEecCCCCChHHHHHHHhc
Q 001077 451 DASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRH 530 (1162)
Q Consensus 451 ~~~yllaI~e~~~~~~~~~~~~~~Gva~vD~sTg~~~l~~f~Dd~~~s~L~t~L~~~~P~EIi~~~~~~s~~t~~~l~~~ 530 (1162)
....++||.|.++. ....||+|.+|+.++++++++|.|+..|.++.+.|.-+.|-||+++....-....+++...
T Consensus 102 ~~~v~~~v~e~r~~-----~~~~Ig~~~~~~~~~q~~l~~f~dst~y~~v~~~l~i~s~~ei~i~~~~~a~~~skl~~~~ 176 (867)
T KOG0220|consen 102 SPSVIVAVVEGRGL-----ARGEIGMASIDLKNPQIILSQFADSTTYAKVITKLKILSPLEIIISNTACAVGNSKLLFTL 176 (867)
T ss_pred CCceEEEEEecCCc-----ccceeEEEEecCCCCceehhhhhccchhHHHHhHhhccChhheeecccccccchHHHHHHH
Confidence 35588999998754 4678999999999999999999999999999999999999999999766544444443321
Q ss_pred cC--CCccccccCCccccChhhhHHHHHHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHH
Q 001077 531 TR--NPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSAL 608 (1162)
Q Consensus 531 ~~--~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Al 608 (1162)
.. .+-++-.-....++..+++++.+..++....+ -++.+++ +.+++++|+
T Consensus 177 ~~e~~~~v~~~~~s~k~fns~~gl~~i~~~~~~~~s------------------------~vle~i~----~k~~al~a~ 228 (867)
T KOG0220|consen 177 ITENFKNVNFTTISRKYFNSTKGLEYIEQLCIAEFS------------------------TVLEEIQ----SKTYALGAA 228 (867)
T ss_pred HhhcccccceeehhhhhcCchhhHHHHHHHHhhhhH------------------------HHHHHHH----HHHHHHHHH
Confidence 10 00000001123455667777777666543111 1233443 358999999
Q ss_pred HHHHHHHHHhccchhhccccceeecCCCCCccCCCCCeeecCHHHHHHccCccccCCCCCcccHHHHHhhhcChHHHHHH
Q 001077 609 GGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLL 688 (1162)
Q Consensus 609 gall~YL~~~~~~~~ll~~~~f~~~~~~~~~~~~~~~~M~LD~~Tl~~LEI~~~~~~g~~~gSL~~lLn~~~T~~GkRlL 688 (1162)
++++.|+...... +..... ..+...+..+.|.||..+.++|||+.|.. -....+|++++|+|.|++|.|.|
T Consensus 229 a~llky~~~~~~~--~~~~~s------lri~~~gs~nT~~id~~~~~~lelV~~~~-~kn~~~l~~vl~~T~t~~g~r~l 299 (867)
T KOG0220|consen 229 AALLKYVEEIQSS--VYAPKS------LRICFQGSENTAMIDSSSAQSLELVINNQ-YKNNHTLFGVLNYTKTPGGYRRL 299 (867)
T ss_pred HHHHHHHHHHHHh--hhccce------eEEEeecccceeeeecccccceEEechhh-hhcccceeeeeeeeecccchhhH
Confidence 9999999976541 211111 12334456679999999999999999874 33456999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHHhcCCchhHHHHHHHhCCCCcHHHHHHHHhccccccCC-CCccchhhHHHHHHHHHH
Q 001077 689 RTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGR-NSNKVVLYEDAAKKQLQE 767 (1162)
Q Consensus 689 r~wl~~PL~d~~~I~~R~daVe~l~~~~~~~~~~lr~~L~~lpDleRll~ri~~~~~~~~~-~~~~~~~~~~~~~~~l~~ 767 (1162)
|..+++||+|...|+.||+++++|.. +.++...+|..|++++|++++++++......... .....+. .+..
T Consensus 300 Rssilqpl~d~~ti~~rleaiqeL~a-~~~L~~~Lr~~~k~~~dld~~~s~~~~~~~~~~i~~~~s~I~-------~~~~ 371 (867)
T KOG0220|consen 300 RSSILQPLTDIETINMRLEAIQELLA-DEELFFGLRSVIKRFLDLDQLLSVLVQIPTQDTVNAAESKIN-------NLIY 371 (867)
T ss_pred HhhhcccccchhhhhHHHHHHHHHhc-CchHhhhhHHHHhhhhhHHHHHHHHHhhhhHHhhhcchhHHH-------HHHH
Confidence 99999999999999999999999997 5678888999999999999999998543211000 0000000 1111
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHhhcchhhHHhhhcCCCCchhHHHHHHHHHhhcchh--------hhcCCCceeeCCCCC
Q 001077 768 FISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWV--------EANNSGRIIPHGGVD 839 (1162)
Q Consensus 768 ~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~i~~~id~~--------~~~~~g~i~~~~G~d 839 (1162)
+..+|.. ...+...+.+..+..+....... ..+.+..+.+.+.+.||-. ...++..+..+.+++
T Consensus 372 Lk~tL~l-------v~~~~~al~~~~s~~~~e~~~~~-~~~r~~~i~~~i~e~I~dd~l~a~~~l~~~~qkcyAvks~i~ 443 (867)
T KOG0220|consen 372 LKHTLEL-------VDPLKIALKNCNSNLLREYYGSF-KDKRFGIILEKIKEVINDDALYAKGCLNLRTQKCYAVKSNIN 443 (867)
T ss_pred HHHHHHH-------HHHHHHHHhhchhHHHHHHHHHh-cchHHHHHHHHHHHHhhHHHHhccchhhhhccceeeeccccc
Confidence 1111111 11111112221122222111100 1123333344444444311 112344556789999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEeCCceEEEEcccc----ccCCCCCcEEEeeeccceEEEeChHH
Q 001077 840 MDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPES----LRGSVPRDYELRSSKKGFFRYWTPNI 915 (1162)
Q Consensus 840 ~~lD~~~~~l~~i~~~L~~~l~~~~~~l~~~~i~~~~~~~~~y~iev~~~----~~~~vp~~~~~~ss~k~~~ry~tp~l 915 (1162)
..+|-+|+.+.++..+..+...+..+.+ ...+.+......||.+.++.. ....+|..|+..+..+++++|+|..+
T Consensus 444 ~~LDiaR~ty~ei~~~~~~~i~~l~E~~-~~nl~~~f~sarGF~~ri~~~~~~~~~~~lP~~fi~~~~~~~~~~~~s~~~ 522 (867)
T KOG0220|consen 444 GFLDIARRTYTEIVDDIAGMISQLGEKF-SLNLRLSFSSARGFFIRITTDCIALPSDTLPSEFIKISKVKNSYSFTSADL 522 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-CccccccccccccEEEEeeccccccccccCchhhhhhhhhcceeeechHHH
Confidence 9999999999998887777666666555 333444333446788877765 24678999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeEcCCCCCCCCcEE
Q 001077 916 KKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYIS 995 (1162)
Q Consensus 916 ~~l~~el~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~ 995 (1162)
.+++.++.+.-.++......++..+++.+.+|.+.+..+.++++.||.|+|||++.... .||||+|++ .|.
T Consensus 523 ik~N~Rlk~~~~E~~l~te~~v~~lld~i~~~I~~L~~iae~~~~lD~l~sfa~~~~~~--~y~~P~fT~-------sla 593 (867)
T KOG0220|consen 523 IKMNERLKEVLREIFLMTEMIVCKLLDEIYEHISCLYKLAEAVSMLDMLCSFAHACTLS--DYVRPEFTD-------SLA 593 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccc--cccccccCC-------cee
Confidence 99999999999998888889999999999999999999999999999999999998743 799999985 289
Q ss_pred EeeccCCccccccCCCCcccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeee
Q 001077 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1162)
Q Consensus 996 i~~~RHP~le~~~~~~~~fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfT 1075 (1162)
|++||||++|+. ....+|.||+.+.. ..++.|||||||+|||||||||||++|||||||||||.+|.+++|+||||
T Consensus 594 I~qGRHPILe~i--~~ek~i~N~t~~t~--~s~f~IITGPNMsGKSTYLKQvAl~~IMAQIGc~IPA~YaS~pIf~RIFt 669 (867)
T KOG0220|consen 594 IKQGRHPILEKI--SAEKPIANNTYVTE--GSNFLIITGPNMSGKSTYLKQVALCQIMAQIGSYVPAEYASFRVFKRIFT 669 (867)
T ss_pred eccCCCchhhhh--cccCcccCcceeec--ccceEEEECCCCCcchHHHHHHHHHHHHHHhccCcchhhccchHHHHHHH
Confidence 999999999974 35569999999985 36899999999999999999999999999999999999999999999999
Q ss_pred ecCCccchhhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHH-hhcccCceEEEehhhhccccc
Q 001077 1076 RMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSG-FQSLAGSQFLSTLFIKCNAVD 1154 (1162)
Q Consensus 1076 RIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~-~~~l~~~~~~~th~~~~~~~~ 1154 (1162)
|||..|+|..+.||||.||.|+|.||++|+.+|||+||||||||||.||+||+||+.| +.+|...+|++|||..+++|+
T Consensus 670 Rmg~nDele~NsS~F~sEMke~A~Ilq~a~~~SLiVlDELgR~TSteeGiaityAvCE~lL~LkayTflATHFldIa~la 749 (867)
T KOG0220|consen 670 RMGTNDELERNSSTFMSEMKEAAYILQNANKNSLIVLDELGRGTSTEEGIAITYAVCEYLLSLKAYTFLATHFLDIAAIA 749 (867)
T ss_pred HhcCchhhhhchhHHHHHHHHHHHHHHhCCcCcEEEEhhhccCCccccchhhHHHHHHHHHHhhHhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999 889999999999999999999
Q ss_pred ceEeee
Q 001077 1155 CFQLTI 1160 (1162)
Q Consensus 1155 ~~~~~~ 1160 (1162)
+|+=+|
T Consensus 750 n~~paV 755 (867)
T KOG0220|consen 750 NYYPAV 755 (867)
T ss_pred hcCccc
Confidence 987555
No 8
>KOG0221 consensus Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=3.8e-74 Score=650.04 Aligned_cols=522 Identities=26% Similarity=0.371 Sum_probs=423.3
Q ss_pred hhHHHHHHHHHHHHHHHhccchhhccccceeecCCCCCccCCCCCeeecCHHHHHHccCccccCC------CCCc-ccHH
Q 001077 601 GSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRS------GDSS-GTLY 673 (1162)
Q Consensus 601 ~~~al~Algall~YL~~~~~~~~ll~~~~f~~~~~~~~~~~~~~~~M~LD~~Tl~~LEI~~~~~~------g~~~-gSL~ 673 (1162)
...+..|+|+++.+|.+..+...+-.+ .|+ -|+.++..+...+.|.||.+|++.|+||...+. +... -|||
T Consensus 193 i~~~~r~~g~ll~fl~~~rigv~l~~~-~v~-~pI~gik~f~l~~lv~iD~nTisaL~Ifp~e~~~~~~k~~~~~g~Slf 270 (849)
T KOG0221|consen 193 IEAVVRALGGLLKFLGRRRIGVELEDY-NVS-VPILGIKKFMLTHLVNIDQNTISALQIFPSESHPSKVKSGLKEGLSLF 270 (849)
T ss_pred hHHHHHhhhhHHhhcccceeeeeeccc-ccc-ccccceeEEeecceeeeccchHHHHHhcccccccchhhhhhhcchhHH
Confidence 357789999999999988765543322 121 234456666677899999999999999987653 1112 2999
Q ss_pred HHHhhhcChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhc-CCchhHHHHHHHhCCCCcHHHHHHHHhccccccCCCCc
Q 001077 674 AQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRG-VNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSN 752 (1162)
Q Consensus 674 ~lLn~~~T~~GkRlLr~wl~~PL~d~~~I~~R~daVe~l~~-~~~~~~~~lr~~L~~lpDleRll~ri~~~~~~~~~~~~ 752 (1162)
+++|+|.+..|+|+||.|+.+|++|..+|..||++|++|+. .|.+....|.+.|+++||+--++.|+..+..
T Consensus 271 ~l~n~c~s~~g~k~Lr~Wf~nPttd~~~l~sR~~~i~~fl~~qNa~~~~~Ls~~lgr~k~~~~~~~~~~sg~t------- 343 (849)
T KOG0221|consen 271 GLLNRCHSKWGEKLLRLWFTNPTTDLGELSSRLDVIQFFLLPQNADMAQMLSRLLGRIKNVPLILKRMKSGHT------- 343 (849)
T ss_pred HHHHHHhhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhcccHHHHHHHHhcCCc-------
Confidence 99999999999999999999999999999999999999874 4667778899999999999999999965432
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHhhhcCCCCchhHHHHHHHHHhhcchhhhcCCCce
Q 001077 753 KVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRI 832 (1162)
Q Consensus 753 ~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~i~~~id~~~~~~~g~i 832 (1162)
++. .+..+.+++...-.+.++|.++..-.+ +.+... ...+.++.+++..+...||+..+..++++
T Consensus 344 ~l~--------~W~~~~stv~~~~~i~~~~rslp~s~~------~~~~~~-~~~~~~l~eia~~~g~vIdF~~S~~~~r~ 408 (849)
T KOG0221|consen 344 KLS--------DWQVLYSTVYSALGIRDACRSLPQSIQ------LFRDIA-QEFSDDLHEIASLIGKVIDFEGSLAENRF 408 (849)
T ss_pred eec--------hHHHHHHHHHHHHHHHHHHHhCccchh------hhhHHH-HHHHHHHHHHHHHhhheeccccccccceE
Confidence 122 234445555544455666655432111 111100 01134566677778889999999999999
Q ss_pred eeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCceEEEeCCceEEEEccccccCCCCC----cEEEeeeccc
Q 001077 833 IPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGD--TSITYVTIGKDLYLLEVPESLRGSVPR----DYELRSSKKG 906 (1162)
Q Consensus 833 ~~~~G~d~~lD~~~~~l~~i~~~L~~~l~~~~~~l~~--~~i~~~~~~~~~y~iev~~~~~~~vp~----~~~~~ss~k~ 906 (1162)
.+.+|+|+++|+.|..|..+..-|.+..++....+.. +++..+.+...||++.||........+ .|..+.....
T Consensus 409 Tv~~giD~elDE~r~~y~~lp~~Lt~vAr~e~~~L~~~~psv~~VYIPliGfllsiprl~~~~~~~d~~~~~~~mf~s~E 488 (849)
T KOG0221|consen 409 TVLPGIDPELDEKRRRYMGLPSFLTEVARKELENLDSRIPSVSVVYIPLIGFLLSIPRLPSMVEASDFENGLDFMFLSEE 488 (849)
T ss_pred EecCCCChHHHHHHHHHccchHHHHHHHHHHHHhhCCCCCceeEEEeeceeeEEecccccchhhcCCcccchHHHhcccc
Confidence 9999999999999999999999999888776666654 467777888899999998754322222 3667777777
Q ss_pred eEEEeChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeEcCC
Q 001077 907 FFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDS 986 (1162)
Q Consensus 907 ~~ry~tp~l~~l~~el~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~ 986 (1162)
..+|.+....+|.+.+.+..-++...+..|+-.|-.++......+.++...+++||+|+|||.+|..+ +|.||.++++
T Consensus 489 ~l~~rnart~eLD~~~GDIy~~i~D~et~i~~~Lq~qvl~rk~~lt~~l~laSrldvLls~a~~aa~~--gy~~P~lv~e 566 (849)
T KOG0221|consen 489 KLHYRNARTKELDALLGDIYCEIRDQETLIMYQLQCQVLARKAVLTRVLDLASRLDVLLSLASAAADY--GYSRPRLVPE 566 (849)
T ss_pred eeEeecccHHhHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCccccH
Confidence 88999999999998888888888888888999999999999999999999999999999999999865 7999999962
Q ss_pred CCCCCCcEEEeeccCCccccccCCCCcccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccc
Q 001077 987 CSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFE 1066 (1162)
Q Consensus 987 ~~~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~ 1066 (1162)
.-.+.|++||||++|. ...+||||++.+|+ ++.|+.||||||.+|||.|||||||||+||||||||||+.|+
T Consensus 567 ----~~il~I~ngrh~l~e~---~~dtfvPNst~igg-dkgri~vITGpNasGKSiYlkqvglivfLahIGsFVPAe~A~ 638 (849)
T KOG0221|consen 567 ----VLILRIQNGRHPLMEL---CADTFVPNSTEIGG-DKGRIKVITGPNASGKSIYLKQVGLIVFLAHIGSFVPAEEAE 638 (849)
T ss_pred ----HHHHHHHcCChhHHHH---HHHhcCCCceeecC-CCceEEEEeCCCCCCceEEEeechhhhHHHhhccccchhhhh
Confidence 2347899999999985 34689999999997 468999999999999999999999999999999999999999
Q ss_pred cCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHH-hhccc---CceE
Q 001077 1067 ISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSG-FQSLA---GSQF 1142 (1162)
Q Consensus 1067 l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~-~~~l~---~~~~ 1142 (1162)
||++|||||||+..|++..|+||||..+.++|..|++||.+|||||||+|+||.|.||.|+-.++.. +..-. -.+|
T Consensus 639 IGivDrI~tri~s~esv~~gqSTFmiD~~Qva~aLr~AT~~SLvlIDEfGKGT~tedGlsLlasvm~~w~~rg~~~Prif 718 (849)
T KOG0221|consen 639 IGIVDRIFTRIHSCESVSLGQSTFMIDLNQVAKALRNATAQSLVLIDEFGKGTNTEDGLSLLASVMRHWLARGPTCPRIF 718 (849)
T ss_pred cchHHHHHHHhhhhhhhhhhhhHHHHhHHHHHHHHHHhhcCcEEEEhhccCCccccccHHHHHHHHHHHHhcCCCCCeEE
Confidence 9999999999999999999999999999999999999999999999999999999999999776654 33332 2499
Q ss_pred EEehhhhcccccce
Q 001077 1143 LSTLFIKCNAVDCF 1156 (1162)
Q Consensus 1143 ~~th~~~~~~~~~~ 1156 (1162)
+.|||+-+--.+++
T Consensus 719 vcThfheL~ne~~L 732 (849)
T KOG0221|consen 719 VCTHFHELVNEQLL 732 (849)
T ss_pred EeccHHHhhhhccC
Confidence 99999966544444
No 9
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=100.00 E-value=1.4e-61 Score=605.68 Aligned_cols=433 Identities=21% Similarity=0.318 Sum_probs=358.8
Q ss_pred HHHhhhcChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhcCCchhHHHHHHHhCCCCcHHHHHHHHhccccccCCCCcc
Q 001077 674 AQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNK 753 (1162)
Q Consensus 674 ~lLn~~~T~~GkRlLr~wl~~PL~d~~~I~~R~daVe~l~~~~~~~~~~lr~~L~~lpDleRll~ri~~~~~~~~~~~~~ 753 (1162)
.+-++|.|++|+|+|++ ++|+.|++.|+.||+.|+++.. .+.......|++++|+++++.|+..+...
T Consensus 17 ~l~~~~~t~~Gk~~l~~--l~P~~~~~~i~~~l~~~~e~~~---~~~~~~~~~l~~~~Di~~~l~r~~~g~~l------- 84 (782)
T PRK00409 17 QLKTFAASELGKEKVLQ--LDPETDFEEVEELLEETDEAAK---LLRLKGLPPFEGVKDIDDALKRAEKGGVL------- 84 (782)
T ss_pred HHHhHcCCHHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHH---HHHhcCCCCCCCCccHHHHHHHHhCCCCC-------
Confidence 44578999999999999 5899999999999999998862 12223344688999999999999642211
Q ss_pred chhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHhhhcCCCCchhHHHHHHHHHhhcchhhhcCCCcee
Q 001077 754 VVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRII 833 (1162)
Q Consensus 754 ~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~i~~~id~~~~~~~g~i~ 833 (1162)
...+|.++...|..+..+...+.... .....+.|..++. .++.+.++.+.|..+|| .+|.+
T Consensus 85 -------~~~eL~~i~~~l~~~~~l~~~l~~~~---~~~~~~~L~~~~~---~l~~~~~l~~~i~~~id-----~~g~i- 145 (782)
T PRK00409 85 -------SGDELLEIAKTLRYFRQLKRFIEDLE---EEEELPILEEWVA---KIRTLPELEQEIHNCID-----EEGEV- 145 (782)
T ss_pred -------CHHHHHHHHHHHHHHHHHHHHHHhcc---cccchhHHHHHHH---cCcCcHHHHHHHHHHhC-----CCCEE-
Confidence 13466777777766555544332110 0011234554443 34566677778888886 34554
Q ss_pred eCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCceEEEeCCceEEEEccccccCCCCCcEEEeeeccceEEE
Q 001077 834 PHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGD---TSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRY 910 (1162)
Q Consensus 834 ~~~G~d~~lD~~~~~l~~i~~~L~~~l~~~~~~l~~---~~i~~~~~~~~~y~iev~~~~~~~vp~~~~~~ss~k~~~ry 910 (1162)
++|++++|+.+|..++++++++++.+++..+..+. -+-.+++.++++|+|+|+....+.+|+.|+ .++.+|.++|
T Consensus 146 -~d~aS~eL~~iR~~~~~~~~~i~~~l~~~~~~~~~~~~L~d~~it~r~~r~~i~vk~~~~~~~~g~v~-~~s~sg~t~y 223 (782)
T PRK00409 146 -KDSASEKLRGIRRQLRRKKSRIREKLESIIRSKSLQKYLQDTIITIRNDRYVLPVKAEYKHAIKGIVH-DQSSSGATLY 223 (782)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEECCEEEEEechhhhccCCCcee-eEECCCCEEE
Confidence 78999999999999999999998888775543321 122467788899999999999888987664 5566888999
Q ss_pred eChH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeEcCCCCC
Q 001077 911 WTPN-IKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSN 989 (1162)
Q Consensus 911 ~tp~-l~~l~~el~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~ 989 (1162)
++|. +.++++++.+++.++..++.+++.+|...+.++...|..+.+++++|||++|+|.+|..+ +||+|.|++
T Consensus 224 ~ep~~~~~ln~~l~~l~~~~~~~~~~il~~l~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~--~~~~P~~~~---- 297 (782)
T PRK00409 224 IEPQSVVELNNEIRELRNKEEQEIERILKELSAKVAKNLDFLKFLNKIFDELDFIFARARYAKAL--KATFPLFND---- 297 (782)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCccceEcC----
Confidence 9998 999999999999999999999999999999999999999999999999999999999865 699999974
Q ss_pred CCCcEEEeeccCCccccccCCCCcccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCc-cccC
Q 001077 990 EEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-FEIS 1068 (1162)
Q Consensus 990 ~~~~l~i~~~RHP~le~~~~~~~~fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~-a~l~ 1068 (1162)
...|.|+++|||+++. ..|||||+.|+.+ .++++||||||||||||||++|++++|||+||||||++ ++++
T Consensus 298 -~~~i~l~~~rHPll~~-----~~~Vpndi~l~~~--~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~ 369 (782)
T PRK00409 298 -EGKIDLRQARHPLLDG-----EKVVPKDISLGFD--KTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIP 369 (782)
T ss_pred -CCcEEEcCcCCceecc-----CceECceeEECCC--ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCcccc
Confidence 3469999999999964 3699999999853 57999999999999999999999999999999999986 8999
Q ss_pred CcceeeeecCCccchhhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHH-hhcccCceEEEehh
Q 001077 1069 PVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSG-FQSLAGSQFLSTLF 1147 (1162)
Q Consensus 1069 i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~-~~~l~~~~~~~th~ 1147 (1162)
+||+||++||+.|+|..+.|||+.||.+++.|++.++.+|||||||+|+||++.+|.+||+++.+ +.+....++++|||
T Consensus 370 ~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~ 449 (782)
T PRK00409 370 VFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHY 449 (782)
T ss_pred ccceEEEecCCccchhhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCh
Confidence 99999999999999999999999999999999999999999999999999999999999999877 55566789999999
Q ss_pred hhcccc
Q 001077 1148 IKCNAV 1153 (1162)
Q Consensus 1148 ~~~~~~ 1153 (1162)
..++.+
T Consensus 450 ~el~~~ 455 (782)
T PRK00409 450 KELKAL 455 (782)
T ss_pred HHHHHH
Confidence 876654
No 10
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=100.00 E-value=1.6e-54 Score=540.76 Aligned_cols=427 Identities=23% Similarity=0.306 Sum_probs=354.0
Q ss_pred HHHHHhhhcChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhcCCchhHHHHHHHhCCCCcHHHHHHHHhccccccCCCC
Q 001077 672 LYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNS 751 (1162)
Q Consensus 672 L~~lLn~~~T~~GkRlLr~wl~~PL~d~~~I~~R~daVe~l~~~~~~~~~~lr~~L~~lpDleRll~ri~~~~~~~~~~~ 751 (1162)
+=.+.++|.|++|++++++ +.|+.+.+.|+.||+.++++.... . .-.|.+++|+++++.|+..+...+
T Consensus 15 ~~~l~~~~~t~~gk~~~~~--l~P~~~~~~i~~~l~~~~e~~~~~----~--~~~l~~~~di~~~l~r~~~g~~l~---- 82 (771)
T TIGR01069 15 KENLLKQTFTPLGKEDAIG--LKPPKSVEESKEIIIKLTALGSIE----N--NVRFFGFEDIRELLKRAELGGIVK---- 82 (771)
T ss_pred HHHHHHHcCCHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHhh----c--cCCcCCCccHHHHHHHHhcCCcCC----
Confidence 3345689999999999999 799999999999999999987421 1 335889999999999985322111
Q ss_pred ccchhhHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHhhhcCCCCchhHHHHHHHHHhhcchhhhcCCC
Q 001077 752 NKVVLYEDAAKKQ-LQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSG 830 (1162)
Q Consensus 752 ~~~~~~~~~~~~~-l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~i~~~id~~~~~~~g 830 (1162)
..+ |..+..+|..+..+...... ....+.|..+.. .++.+..+++.|..+|| .+|
T Consensus 83 ----------~~e~l~~i~~~l~~~~~l~~~l~~------~~~~~~L~~~~~---~l~~~~~l~~~i~~~id-----~~g 138 (771)
T TIGR01069 83 ----------GLEYILVIQNALKTVKHLKVLSEH------VLDLEILFHLRL---NLITLPPLENDIIACID-----DDG 138 (771)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHHhc------cccchHHHHHHh---cCCCcHHHHHHHHHHhC-----CCC
Confidence 112 55555555544444332211 011233444432 34456667778888886 356
Q ss_pred ceeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH------HhCCCCceEEEeCCceEEEEccccccCCCCCcEEEeeec
Q 001077 831 RIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRK------LLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSK 904 (1162)
Q Consensus 831 ~i~~~~G~d~~lD~~~~~l~~i~~~L~~~l~~~~~------~l~~~~i~~~~~~~~~y~iev~~~~~~~vp~~~~~~ss~ 904 (1162)
.+ +++.+++|+.++..++.++.++++.+++..+ .+++ .++++++++|+|+|+.+.++++|+.++. .+.
T Consensus 139 ~i--~d~aS~~L~~ir~~~~~~~~~i~~~l~~~~~~~~~~~~l~~---~~it~r~~r~vipvk~~~~~~i~g~v~~-~S~ 212 (771)
T TIGR01069 139 KV--KDGASEELDAIRESLKALEEEVVKRLHKIIRSKELAKYLSD---TIVTIRNGRYVLPLKSGFKGKIKGIVHD-TSS 212 (771)
T ss_pred EE--CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcC---ceEEEECCEEEEEeeHHHhhcCCCeEEE-EeC
Confidence 55 6899999999999999999998888776543 2333 4778888999999999998999877654 566
Q ss_pred cceEEEeChH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeE
Q 001077 905 KGFFRYWTPN-IKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVI 983 (1162)
Q Consensus 905 k~~~ry~tp~-l~~l~~el~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~ 983 (1162)
+|.++|++|. +.++++++.+++.++..++..|+.+|...+.++...|..+++++++|||++|+|.+|..+ .+|+|.+
T Consensus 213 sg~t~~~ep~~~~~ln~~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~a~~~--~~~~P~~ 290 (771)
T TIGR01069 213 SGETFYIEPQAIVKLNNKLAQLKNEEECEIEKILRTLSEKVQEYLLELKFLFKEFDFLDSLQARARYAKAV--KGEFPMP 290 (771)
T ss_pred CCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCeecee
Confidence 8999999998 999999999999999999999999999999999999999999999999999999999865 6899998
Q ss_pred cCCCCCCCCcEEEeeccCCccccccCCCCcccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCC
Q 001077 984 LDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE 1063 (1162)
Q Consensus 984 ~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~ 1063 (1162)
.+ ...|.++++|||+++. ..|||||+.|+.+ .++++||||||||||||||++|++++|||+||||||.
T Consensus 291 ~~-----~~~i~l~~~rhPll~~-----~~~vp~di~l~~~--~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~ 358 (771)
T TIGR01069 291 SF-----TGKIILENARHPLLKE-----PKVVPFTLNLKFE--KRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPAN 358 (771)
T ss_pred cC-----CCCEEEccccCceecC-----CceEeceeEeCCC--ceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCC
Confidence 74 2379999999999863 2599999999853 4689999999999999999999999999999999997
Q ss_pred c-cccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHH-hhcccCce
Q 001077 1064 I-FEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSG-FQSLAGSQ 1141 (1162)
Q Consensus 1064 ~-a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~-~~~l~~~~ 1141 (1162)
. +.+++||+||++||..|++..+.|||+.||.+++.||..++++|||||||+|+||++.+|.+||+++.+ +.+....+
T Consensus 359 ~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~v 438 (771)
T TIGR01069 359 EHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQV 438 (771)
T ss_pred ccccccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 5 799999999999999999999999999999999999999999999999999999999999999999887 55567789
Q ss_pred EEEehhhhccccc
Q 001077 1142 FLSTLFIKCNAVD 1154 (1162)
Q Consensus 1142 ~~~th~~~~~~~~ 1154 (1162)
+++|||..+.++.
T Consensus 439 iitTH~~eL~~~~ 451 (771)
T TIGR01069 439 LITTHYKELKALM 451 (771)
T ss_pred EEECChHHHHHHh
Confidence 9999999887654
No 11
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=100.00 E-value=5.1e-48 Score=422.06 Aligned_cols=169 Identities=43% Similarity=0.668 Sum_probs=139.3
Q ss_pred ccceeEcCCCCCCCCcEEEeeccCCccccccCCCCcccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcC
Q 001077 978 TCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG 1057 (1162)
Q Consensus 978 ~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG 1057 (1162)
||||+|++ ...|.|+++|||+++.. +....|||||+.++.. ..+++||||||||||||||||||+++||||+|
T Consensus 1 y~~P~~~~-----~~~l~i~~~~HPll~~~-~~~~~~v~ndi~~~~~-~~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G 73 (235)
T PF00488_consen 1 YCRPKISE-----EKSLKIKEGRHPLLEEK-LENKKFVPNDIELSNN-KSRIIIITGPNMSGKSTFLKQIGLIVILAQIG 73 (235)
T ss_dssp EB-EEEES-----TTEEEEEEE--TTHHHH-TTTSSC--EEEEESSS-SSSEEEEESSTTSSHHHHHHHHHHHHHHHTTT
T ss_pred CcccEEcC-----CCCEEEEeccCCEEecc-ccCCceecceeecCCC-ceeEEEEeCCCccchhhHHHHHHHHhhhhhcC
Confidence 79999985 24899999999999873 3456899999999863 34799999999999999999999999999999
Q ss_pred CcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHH-hhc
Q 001077 1058 ADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSG-FQS 1136 (1162)
Q Consensus 1058 ~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~-~~~ 1136 (1162)
|||||++|++++||+||||||+.|++..|.|||+.||.+++.||++++++||||||||||||++.||.|||+|+.+ |.+
T Consensus 74 ~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~ 153 (235)
T PF00488_consen 74 CFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLE 153 (235)
T ss_dssp --BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHH
T ss_pred ceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 554
Q ss_pred -ccCceEEEehhhhcccc
Q 001077 1137 -LAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1137 -l~~~~~~~th~~~~~~~ 1153 (1162)
....++++|||..+..+
T Consensus 154 ~~~~~~i~~TH~~~l~~~ 171 (235)
T PF00488_consen 154 KSGCFVIIATHFHELAEL 171 (235)
T ss_dssp TTT-EEEEEES-GGGGGH
T ss_pred hccccEEEEeccchhHHH
Confidence 47779999999976543
No 12
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=9.4e-41 Score=360.01 Aligned_cols=154 Identities=53% Similarity=0.792 Sum_probs=140.7
Q ss_pred EeeccCCccccccCCCCcccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeee
Q 001077 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1162)
Q Consensus 996 i~~~RHP~le~~~~~~~~fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfT 1075 (1162)
|+++|||+++.. ....|||||+.++.. ..++++||||||+|||||||++|++++|||+||||||++|+++++|+|||
T Consensus 2 ~~~~rHPll~~~--~~~~~v~ndi~l~~~-~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~ 78 (218)
T cd03286 2 FEELRHPCLNAS--TASSFVPNDVDLGAT-SPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFT 78 (218)
T ss_pred cccccCCEEecc--cCCCeEEeeeEEeec-CCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEE
Confidence 679999999852 234799999999853 35799999999999999999999999999999999999999999999999
Q ss_pred ecCCccchhhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHH-hhcc-cCceEEEehhhhccc
Q 001077 1076 RMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSG-FQSL-AGSQFLSTLFIKCNA 1152 (1162)
Q Consensus 1076 RIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~-~~~l-~~~~~~~th~~~~~~ 1152 (1162)
|||+.|++..|+||||.||.+++.||+++|++|||||||+||||++.||.+||+++.+ +.+. ...++++|||+.+..
T Consensus 79 ~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~ 157 (218)
T cd03286 79 RIGARDDIMKGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCD 157 (218)
T ss_pred ecCcccccccCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999776 5554 678999999986543
No 13
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.5e-39 Score=393.69 Aligned_cols=419 Identities=23% Similarity=0.332 Sum_probs=333.7
Q ss_pred HHhhhcChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhcCCchhHHHHH--HHhCCCCcHHHHHHHHhccccccCCCCc
Q 001077 675 QLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFR--KALSRLPDMERLLARLFASSEANGRNSN 752 (1162)
Q Consensus 675 lLn~~~T~~GkRlLr~wl~~PL~d~~~I~~R~daVe~l~~~~~~~~~~lr--~~L~~lpDleRll~ri~~~~~~~~~~~~ 752 (1162)
+..++.|+.|+.+|+. +.|..+.+.|+..++-+.++... ... . -.+.++-|+...+.++..++..
T Consensus 16 ~~~~~~s~~g~~~~~~--l~p~~~~~~i~~~~~e~~~~~~~----~~~-~g~~~~~~l~~i~~~l~~~e~g~~l------ 82 (753)
T COG1193 16 LASYAQSSLGLEELKN--LKPRTDLELIEEELSETAEALDI----LED-EGLPPLGGLNDVSEALGRLEKGGRL------ 82 (753)
T ss_pred HHHhccCHHHHHHHHh--cCccccHHHHHHHHHHHHHHHHH----Hhc-cCCCCchhhhhhHHHHHHHhhcccC------
Confidence 4588999999999999 68999999999999988877531 000 0 1356778888888888522211
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHhhhcCCCCchhHHHHHHHHHhhcchhhhcCCCce
Q 001077 753 KVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEANNSGRI 832 (1162)
Q Consensus 753 ~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~i~~~id~~~~~~~g~i 832 (1162)
...++..+...|+++..+..+...+.... ..... .++.+..+...+...+| ..|.+
T Consensus 83 --------~~~el~~i~~~l~~~~~lkr~~~~~e~~~----~~~~~-------~~~~~~~l~~~i~~~id-----~~g~i 138 (753)
T COG1193 83 --------HVEELLEISDFLRGFRALKRAIKKLERIK----RTLAL-------ALIELSDLELEINIPID-----DDGLI 138 (753)
T ss_pred --------CHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHH-------hhhcchHHHHHHhhhhc-----ccccc
Confidence 13456666777777766655544332211 11111 23445555555555554 34555
Q ss_pred eeCCCCChhHHHHHHHHHHHHHHHHHHH----HHH-HHHhCCCCceEEEeCCceEEEEccccccCCCCCcEEEeeeccce
Q 001077 833 IPHGGVDMDYDSACKKVKEIEASLTKHL----KEQ-RKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGF 907 (1162)
Q Consensus 833 ~~~~G~d~~lD~~~~~l~~i~~~L~~~l----~~~-~~~l~~~~i~~~~~~~~~y~iev~~~~~~~vp~~~~~~ss~k~~ 907 (1162)
.+..++.++.++..++.++.++.+.+ +.. ...+.+ .++++++++|+++|...+++.+++..+-. +..|.
T Consensus 139 --~d~as~~l~~ir~~lr~~~~~i~~~l~~~~~~~~~~~L~e---~~v~~r~~r~vlpvk~~fk~~i~giv~d~-sssg~ 212 (753)
T COG1193 139 --KDRASFELDAIRRQLRDLEEEIRDKLESLIRSKEAKYLQD---RIVTTRDGREVLPVKAEFKGAIKGIVHDT-SSSGA 212 (753)
T ss_pred --cccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHhhhh---ceEeccCCeEEeHHHHHhhhhcCceEeec-ccccC
Confidence 56677888888887765555544444 333 344443 36778889999999999999998876544 45788
Q ss_pred EEEeChH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeEcCC
Q 001077 908 FRYWTPN-IKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDS 986 (1162)
Q Consensus 908 ~ry~tp~-l~~l~~el~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~ 986 (1162)
+.|..|. +..+++++..+..+.+.+...+++.+...+.++...+..+...++.||++.+-+.++... ..+.|.|.+
T Consensus 213 tl~ieP~~vv~l~n~~~~l~~eE~~e~e~il~~lsa~v~~~~~~l~~~~~~~~~lD~i~Ak~~~~~~~--~~v~P~~~~- 289 (753)
T COG1193 213 TLYIEPRSVVKLNNELRALLVEEDEEEERILRELSALVAPVIPELEILLEIIGELDFIEAKVRYAKAL--KGVKPDFSN- 289 (753)
T ss_pred eeeecchHHHhhccHhhhhhccchHhHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHHHhh--ccCCCccCC-
Confidence 9999998 999999999999999999999999999999999999999999999999999999999864 578999973
Q ss_pred CCCCCCcEEEeeccCCccccccCCCCcccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCcc-
Q 001077 987 CSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIF- 1065 (1162)
Q Consensus 987 ~~~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a- 1065 (1162)
...|.+.++|||++.. -||||+.++. .-+.++||||||||||+.|+++|++++|||+|.|+||.+.
T Consensus 290 ----~~~l~l~~~~HPll~~-------~v~~~i~~~~--e~~~l~ITGpN~GGKtvtLKTlgl~~lm~q~gl~i~a~~gs 356 (753)
T COG1193 290 ----DGVLELLDARHPLLKE-------DVPNDLELGE--ELDRLIITGPNTGGKTVTLKTLGLLRLMAQSGLPIPALEGS 356 (753)
T ss_pred ----CceEEeccccCccCcc-------cccccccccc--ccceeeEecCCCCcceehHHHHHHHHHHHHcCCCeeccCCC
Confidence 3479999999999974 2999999985 3578999999999999999999999999999999999876
Q ss_pred ccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHH-hhcccCceEEE
Q 001077 1066 EISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSG-FQSLAGSQFLS 1144 (1162)
Q Consensus 1066 ~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~-~~~l~~~~~~~ 1144 (1162)
+|++|+.||..||+.++|.+..|||..+|..++.||..++ ||||+||||.||.+.+|.|+|.++.+ +.+....++.+
T Consensus 357 ei~~F~~i~aDIGDeQsIeqsLSTFSshm~~i~~il~~~d--sLvl~DElg~GTdp~EgaaLai~ile~l~~~~~~~~~t 434 (753)
T COG1193 357 ELPVFVKIFADIGDEQSIEQSLSTFSSHMTNIVEILEKAD--SLVLFDELGSGTDPDEGAALAIAILEDLLEKPAKIVAT 434 (753)
T ss_pred cchhHHHhhhccCcHHHHHHHHhhhHHHHHHHHHHHhhcc--hhHHHHHhhcCCCcchhHHHHHHHHHHHHhcccceehH
Confidence 9999999999999999999999999999999999996555 99999999999999999999999998 67788889999
Q ss_pred ehhhhccccc
Q 001077 1145 TLFIKCNAVD 1154 (1162)
Q Consensus 1145 th~~~~~~~~ 1154 (1162)
|||.-+.|+.
T Consensus 435 TH~~elk~~~ 444 (753)
T COG1193 435 THYRELKALA 444 (753)
T ss_pred hhHHHHHHHH
Confidence 9999777653
No 14
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=2.8e-39 Score=349.55 Aligned_cols=157 Identities=45% Similarity=0.630 Sum_probs=143.4
Q ss_pred EEEeeccCCccccccCCCCcccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCccee
Q 001077 994 ISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRI 1073 (1162)
Q Consensus 994 l~i~~~RHP~le~~~~~~~~fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrI 1073 (1162)
|+|+++|||+++. .....|||||+.++.. ..++++||||||+|||||||++|++++|||+||||||+.++++++|+|
T Consensus 1 ~~i~~~rHPlle~--~~~~~~v~n~i~~~~~-~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i 77 (222)
T cd03287 1 ILIKEGRHPMIES--LLDKSFVPNDIHLSAE-GGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSV 77 (222)
T ss_pred CeeecccCCEEec--cCCCCEEEEeEEEEec-CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceE
Confidence 4689999999985 2334799999999743 357899999999999999999999999999999999999999999999
Q ss_pred eeecCCccchhhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHH-hhcc-cCceEEEehhhhcc
Q 001077 1074 FVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSG-FQSL-AGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1074 fTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~-~~~l-~~~~~~~th~~~~~ 1151 (1162)
|||||+.|++..|+||||.||.+++.||++||++|||||||+||||++.||.+|++++.+ +.+. ...++++|||..+.
T Consensus 78 ~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~ 157 (222)
T cd03287 78 LTRMGASDSIQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLG 157 (222)
T ss_pred EEEecCccccccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987 5555 66899999999765
Q ss_pred cc
Q 001077 1152 AV 1153 (1162)
Q Consensus 1152 ~~ 1153 (1162)
.+
T Consensus 158 ~~ 159 (222)
T cd03287 158 EI 159 (222)
T ss_pred HH
Confidence 43
No 15
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=4.6e-36 Score=342.70 Aligned_cols=306 Identities=33% Similarity=0.437 Sum_probs=238.5
Q ss_pred cccHHHHHhhhcChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhcCCchhHHHHHHHhCCCCcHHHHHHHHhccccccC
Q 001077 669 SGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANG 748 (1162)
Q Consensus 669 ~gSL~~lLn~~~T~~GkRlLr~wl~~PL~d~~~I~~R~daVe~l~~~~~~~~~~lr~~L~~lpDleRll~ri~~~~~~~~ 748 (1162)
+||||++||+|+|++|+|+||+|+++|++|.++|++||++|++|.. +..+...++..|++++|++|++.|+..+. .
T Consensus 1 ~~sL~~~l~~~~T~~G~r~L~~wl~~Pl~~~~~I~~R~~~v~~~~~-~~~l~~~l~~~L~~~~Di~~~l~~~~~~~-~-- 76 (308)
T smart00533 1 KGSLFELLNHTKTPMGKRLLRRWLLQPLLDLKEINERLDAVEELVE-NPELRQKLRQLLKRIPDLERLLSRIERGR-A-- 76 (308)
T ss_pred CCCHHHHHccCCCcHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHh-ChHHHHHHHHHHccCCcHHHHHHHHHcCC-C--
Confidence 4799999999999999999999999999999999999999999996 55677889999999999999999995321 0
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHhhhcCCCCchhHHHHHHHHHhhcc-hhhhc
Q 001077 749 RNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFD-WVEAN 827 (1162)
Q Consensus 749 ~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~i~~~id-~~~~~ 827 (1162)
..+++..++.++..+..+.+.+.... .......+..+. .. +...+..+...++ .....
T Consensus 77 ------------~~~el~~l~~~l~~~~~l~~~l~~~~---~~~~~~~~~~~~---~~---~~~~~~~l~~~~~~~~~~~ 135 (308)
T smart00533 77 ------------SPRDLLRLYDSLEGLKEIRQLLESLD---GPLLGLLLKVIL---EP---LLELLELLLELLNDDDPLE 135 (308)
T ss_pred ------------CHHHHHHHHHHHHHHHHHHHHHHhcC---cHHHHHHHHhhc---cc---hHHHHHHHHHHhccCCccc
Confidence 12355666666655554443322110 000001111111 01 1112222222221 11111
Q ss_pred CCCceeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEeCCceEEEEccccccCCCCCcEEEeeeccce
Q 001077 828 NSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGF 907 (1162)
Q Consensus 828 ~~g~i~~~~G~d~~lD~~~~~l~~i~~~L~~~l~~~~~~l~~~~i~~~~~~~~~y~iev~~~~~~~vp~~~~~~ss~k~~ 907 (1162)
......+++|++++||.++..+++++.+++++++++.+.++.+.+++..+...+|+|+||.....++|++|+..+++++.
T Consensus 136 ~~~~~~i~~~~s~~Ld~lr~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~g~~i~v~~~~~~~~~~~~~~~s~s~~~ 215 (308)
T smart00533 136 VNDGGLIKDGFDPELDELREKLEELEEELEELLKKEREELGIDSLKLGYNKVHGYYIEVTKSEAKKVPKDFIRRSSLKNT 215 (308)
T ss_pred ccCCCeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeEeccEEEEEEecchhhccCChHHHHHhhhccc
Confidence 11112348999999999999999999999999998887777666666556667799999999888999999999999999
Q ss_pred EEEeChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeEcCCC
Q 001077 908 FRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSC 987 (1162)
Q Consensus 908 ~ry~tp~l~~l~~el~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~ 987 (1162)
.+|.++++.++++++.++++++..++..++.++...+.++...|..+++++++|||++|+|.+|..+ +||||+|++
T Consensus 216 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~l~~~~~~i~~lD~l~s~a~~a~~~--~~~~P~i~~-- 291 (308)
T smart00533 216 ERFTTPELKELENELLEAKEEIERLEKEILRELLEKVLEYLEELRALAEALAELDVLLSLATLAAEG--NYVRPEFVD-- 291 (308)
T ss_pred ceeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCcCCeeCC--
Confidence 9999999999999999999999999999999999999999999999999999999999999999854 699999985
Q ss_pred CCCCCcEEEeeccCCcccc
Q 001077 988 SNEEPYISAKSLGHPVLRS 1006 (1162)
Q Consensus 988 ~~~~~~l~i~~~RHP~le~ 1006 (1162)
.+.|.|++||||+++.
T Consensus 292 ---~~~l~i~~~rHPlle~ 307 (308)
T smart00533 292 ---SGELEIKNGRHPVLEL 307 (308)
T ss_pred ---CCCEEEeeCCCCcccC
Confidence 3579999999999974
No 16
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.5e-35 Score=321.94 Aligned_cols=154 Identities=42% Similarity=0.665 Sum_probs=139.8
Q ss_pred EeeccCCccccccCCCCcccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeee
Q 001077 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1162)
Q Consensus 996 i~~~RHP~le~~~~~~~~fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfT 1075 (1162)
|+++|||+++.. ....|||||+.++.. ..++++||||||||||||||++|++++|||+||||||+++.++++|+||+
T Consensus 2 ~~~~~hpll~~~--~~~~~v~~~~~~~~~-~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~ 78 (222)
T cd03285 2 LKEARHPCVEAQ--DDVAFIPNDVTLTRG-KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILA 78 (222)
T ss_pred ccccCCCEEecc--CCCCeEEeeEEEeec-CCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEe
Confidence 679999999862 345799999999853 46899999999999999999999999999999999999999999999999
Q ss_pred ecCCccchhhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHH-hhc-ccCceEEEehhhhccc
Q 001077 1076 RMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSG-FQS-LAGSQFLSTLFIKCNA 1152 (1162)
Q Consensus 1076 RIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~-~~~-l~~~~~~~th~~~~~~ 1152 (1162)
|+|..|++..+.||||.||.+++.||+.++.+|||||||+||||++.||.++++++.+ +.+ ....++++||+..+..
T Consensus 79 ~~~l~d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~ 157 (222)
T cd03285 79 RVGASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTA 157 (222)
T ss_pred eeccccchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999866 433 3567889999875443
No 17
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.8e-35 Score=319.45 Aligned_cols=153 Identities=39% Similarity=0.610 Sum_probs=138.4
Q ss_pred EeeccCCccccccCCCCcccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeee
Q 001077 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1162)
Q Consensus 996 i~~~RHP~le~~~~~~~~fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfT 1075 (1162)
|+++|||+++.. ...|||||+.+++. ..++++||||||+|||||||+++++++|||+||||||..++++++|+||+
T Consensus 2 i~~~rHPll~~~---~~~~vpnd~~l~~~-~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~ 77 (213)
T cd03281 2 IQGGRHPLLELF---VDSFVPNDTEIGGG-GPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFT 77 (213)
T ss_pred cccccCCEEecc---CCceEcceEEecCC-CceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeee
Confidence 689999999851 24799999999853 24899999999999999999999999999999999999999999999999
Q ss_pred ecCCccchhhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHH-hhcc---cCceEEEehhhhcc
Q 001077 1076 RMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSG-FQSL---AGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1076 RIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~-~~~l---~~~~~~~th~~~~~ 1151 (1162)
+|+..|++..+.|||+.||.+++.|+..++.+|||||||+|+||++.||.++++++.+ +.+. ...++++||+..+.
T Consensus 78 ~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~ 157 (213)
T cd03281 78 RMSSRESVSSGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELF 157 (213)
T ss_pred eeCCccChhhccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHH
Confidence 9999999999999999999999999999999999999999999999999999998877 4333 13689999998654
Q ss_pred c
Q 001077 1152 A 1152 (1162)
Q Consensus 1152 ~ 1152 (1162)
.
T Consensus 158 ~ 158 (213)
T cd03281 158 N 158 (213)
T ss_pred H
Confidence 3
No 18
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=5.1e-35 Score=313.29 Aligned_cols=153 Identities=41% Similarity=0.628 Sum_probs=141.3
Q ss_pred EeeccCCccccccCCCCcccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeee
Q 001077 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1162)
Q Consensus 996 i~~~RHP~le~~~~~~~~fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfT 1075 (1162)
|+++|||+++. ....|||||+.++.. ..++++||||||||||||||+++++++|||+||||||.+++++++|+||+
T Consensus 2 i~~~~hpll~~---~~~~~v~~~~~~~~~-~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~ 77 (204)
T cd03282 2 IRDSRHPILDR---DKKNFIPNDIYLTRG-SSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLS 77 (204)
T ss_pred cccccCCeEec---cCCcEEEeeeEEeeC-CCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeE
Confidence 67899999985 245799999999863 35899999999999999999999999999999999999999999999999
Q ss_pred ecCCccchhhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHH-hhcccCceEEEehhhhccc
Q 001077 1076 RMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSG-FQSLAGSQFLSTLFIKCNA 1152 (1162)
Q Consensus 1076 RIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~-~~~l~~~~~~~th~~~~~~ 1152 (1162)
++|..|++..+.|||+.||.+++.|++.++++|||||||+|+||++.||.++++++.+ +.+....++++||+..+..
T Consensus 78 ~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~ 155 (204)
T cd03282 78 RLSNDDSMERNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAA 155 (204)
T ss_pred ecCCccccchhhhHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998877 6667788999999986543
No 19
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=100.00 E-value=2.9e-34 Score=310.69 Aligned_cols=155 Identities=45% Similarity=0.671 Sum_probs=141.0
Q ss_pred EeeccCCccccccCCCCcccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeee
Q 001077 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1162)
Q Consensus 996 i~~~RHP~le~~~~~~~~fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfT 1075 (1162)
|+++|||+++.. .....|||||+.++.. .++++||||||||||||||++|++++|||+||+|||.++.++++|+||+
T Consensus 2 i~~~~hp~~~~~-~~~~~~v~n~~~l~~~--~~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~ 78 (216)
T cd03284 2 IEGGRHPVVEQV-LDNEPFVPNDTELDPE--RQILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFT 78 (216)
T ss_pred cccccCCEEeec-cCCCceEeeeEEecCC--ceEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEec
Confidence 789999999862 2235799999999863 3899999999999999999999999999999999999999999999999
Q ss_pred ecCCccchhhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHH-hhcc-cCceEEEehhhhcccc
Q 001077 1076 RMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSG-FQSL-AGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1076 RIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~-~~~l-~~~~~~~th~~~~~~~ 1153 (1162)
+|+..|++..|+|+|+.||.+++.|+.+++.++||||||+|+||++.||.++++++.+ +.+. ...++++||+..+..+
T Consensus 79 ~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~l 158 (216)
T cd03284 79 RIGASDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTEL 158 (216)
T ss_pred cCCchhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998877 4455 6789999999765443
No 20
>PF01624 MutS_I: MutS domain I C-terminus.; InterPro: IPR007695 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the N-terminal domain of proteins in the MutS family of DNA mismatch repair proteins, as well as closely related proteins. The N-terminal domain of MutS is responsible for mismatch recognition and forms a 6-stranded mixed beta-sheet surrounded by three alpha-helices, which is similar to the structure of tRNA endonuclease. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 3THY_B 3THZ_B 3THW_B 3THX_B 2WTU_A 1OH7_A ....
Probab=99.97 E-value=1.2e-31 Score=260.84 Aligned_cols=107 Identities=37% Similarity=0.683 Sum_probs=91.9
Q ss_pred CHHHHHHHHHHHhCCCeEEEEeeCceEEEecccHHHHhhhcceeeec----CC--CCcCCcCcccHhHHHHHHHHcCCeE
Q 001077 328 SEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMK----GE--QPHCGFPERNFSMNVEKLARKGYRV 401 (1162)
Q Consensus 328 TP~~~Qyw~iK~~~~D~VLfFkvGkFYElf~~DA~i~a~~L~L~~t~----g~--~p~~GfPe~sl~~y~~kLV~~GyKV 401 (1162)
|||++|||++|++|||+|+|||+|+|||+|++||+.+++.|+++++. ++ .||||||.++++.|+++||++||||
T Consensus 1 Tp~~~~y~~lk~k~~d~i~lf~~G~fYe~y~~DA~~~a~~l~~~~~~~~~~~~~~~~~~gfp~~~l~~~l~~Ll~~G~~V 80 (113)
T PF01624_consen 1 TPFEQQYWELKEKYPDTIVLFQVGDFYEAYGEDAEFVAEILGLKLSKRKTGGGKSVPMAGFPKSQLDKYLKKLLEAGYRV 80 (113)
T ss_dssp -HHHHHHHHHHCTSTTSEEEEEETTEEEEECHHHHHHHHHHTSSSEEEECSSSECEEEEEEEGGGHHHHHHHHHHTT-EE
T ss_pred ChHHHHHHHHHhhCCCeEEEEEcCCEEEEEccCHHHHHHhccceeeeccccccccccEecccHHHHHHHHHHHHHcCCEE
Confidence 89999999999999999999999999999999999999999999873 22 6999999999999999999999999
Q ss_pred EEEecCCChHHHHHHhhhcCCCCceeeeeEEEEeeCceeeecc
Q 001077 402 LVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGE 444 (1162)
Q Consensus 402 avvEQ~Et~~~~~~r~k~~g~k~~vv~Rev~~ViTpGTl~d~~ 444 (1162)
+||||+|++... +++++|+|++|+||||++|++
T Consensus 81 ~i~~q~~~~~~~----------~~~~~R~v~~i~TpGt~~~~~ 113 (113)
T PF01624_consen 81 AIYEQVETPSET----------KGLIEREVTRIYTPGTLIDDE 113 (113)
T ss_dssp EEEEE-S-HHHH----------SSS--EEEEEEEBTTS-TST-
T ss_pred EEEEecCCcccc----------CCCccEEEEEEECcCeecCcC
Confidence 999999998642 258999999999999999863
No 21
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.96 E-value=4.9e-29 Score=267.40 Aligned_cols=153 Identities=31% Similarity=0.491 Sum_probs=137.5
Q ss_pred EeeccCCccccccCCCCcccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCc-cccCCcceee
Q 001077 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-FEISPVDRIF 1074 (1162)
Q Consensus 996 i~~~RHP~le~~~~~~~~fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~-a~l~i~DrIf 1074 (1162)
|+++|||+++.. ..+|||||+.++.. .++++||||||||||||||+++++++|||+||||||.. +.++.+|++|
T Consensus 2 ~~~~~hp~~~~~---~~~~~~~~~~i~~~--~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~ 76 (200)
T cd03280 2 LREARHPLLPLQ---GEKVVPLDIQLGEN--KRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIF 76 (200)
T ss_pred CcccCCCEEecc---CCceEcceEEECCC--ceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEE
Confidence 789999999852 45799999999852 37899999999999999999999999999999999984 7899999999
Q ss_pred eecCCccchhhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHH-hhcccCceEEEehhhhcccc
Q 001077 1075 VRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSG-FQSLAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1075 TRIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~-~~~l~~~~~~~th~~~~~~~ 1153 (1162)
+++|..|++..+.|+|+.||.+...|+..++..+|+|+||.++||++.++..|++++.+ +.+...+++++||+..+..+
T Consensus 77 ~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~ 156 (200)
T cd03280 77 ADIGDEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAY 156 (200)
T ss_pred EecCchhhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999876544 65567789999998755443
No 22
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.95 E-value=9.7e-29 Score=261.79 Aligned_cols=125 Identities=51% Similarity=0.740 Sum_probs=116.8
Q ss_pred eEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCCCCc
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNS 1108 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~S 1108 (1162)
+++||||||||||||||++|++++|||+||||||+++.++++|+||+++|..|++..|.|||+.||.+++.||..++.++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~ 80 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS 80 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCChhhHHHHHHHHHH-hhc-ccCceEEEehhhhcccc
Q 001077 1109 LVVLDELGRGTSTSDGQAIAVFSSG-FQS-LAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1109 LVIlDELGRGTst~DG~AIA~A~~~-~~~-l~~~~~~~th~~~~~~~ 1153 (1162)
|+|+||+++||++.+|.+|++++.+ +.+ ....++++||+..+..+
T Consensus 81 llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~ 127 (185)
T smart00534 81 LVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKL 127 (185)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHH
Confidence 9999999999999999999998876 444 36679999999965544
No 23
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.95 E-value=2.1e-28 Score=261.70 Aligned_cols=149 Identities=35% Similarity=0.475 Sum_probs=135.9
Q ss_pred EeeccCCccccccCCCCcccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeee
Q 001077 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1162)
Q Consensus 996 i~~~RHP~le~~~~~~~~fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfT 1075 (1162)
++++|||+++. ..+||||+.++. .++++||||||||||||||+++.+++|||+|+||||..+.++ ++++|+
T Consensus 2 ~~~~~hp~~~~-----~~~v~n~i~l~~---g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q-~~~l~~ 72 (199)
T cd03283 2 AKNLGHPLIGR-----EKRVANDIDMEK---KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELP-PVKIFT 72 (199)
T ss_pred CcccCCCeecC-----CCeecceEEEcC---CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcc-cceEEE
Confidence 67999999984 369999999985 379999999999999999999999999999999999999999 899999
Q ss_pred ecCCccchhhcccchHHHHHHHHHHHhcCC--CCcEEEEcCCCCCCChhhHHHHHHHHHH-hhcccCceEEEehhhhccc
Q 001077 1076 RMGAKDHIMAGQSTFLTELSETALMLSSAT--RNSLVVLDELGRGTSTSDGQAIAVFSSG-FQSLAGSQFLSTLFIKCNA 1152 (1162)
Q Consensus 1076 RIGa~D~i~~g~STFmvEM~Eta~IL~~AT--~~SLVIlDELGRGTst~DG~AIA~A~~~-~~~l~~~~~~~th~~~~~~ 1152 (1162)
++...|++..|.|+|..||.++..||+.++ ..+|+|+||.++||++.++..+.+++.+ +.+....++++||+.....
T Consensus 73 ~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~ 152 (199)
T cd03283 73 SIRVSDDLRDGISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELAD 152 (199)
T ss_pred eccchhccccccChHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHH
Confidence 999999999999999999999999999999 9999999999999999999998876544 5566778999999986544
Q ss_pred c
Q 001077 1153 V 1153 (1162)
Q Consensus 1153 ~ 1153 (1162)
.
T Consensus 153 ~ 153 (199)
T cd03283 153 L 153 (199)
T ss_pred h
Confidence 3
No 24
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.95 E-value=2.8e-28 Score=261.93 Aligned_cols=154 Identities=49% Similarity=0.686 Sum_probs=138.9
Q ss_pred EeeccCCccccccCCCCcccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeee
Q 001077 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFV 1075 (1162)
Q Consensus 996 i~~~RHP~le~~~~~~~~fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfT 1075 (1162)
|+++|||+++.. .....|||||+.+++ .++++||||||||||||||+++.+++|+|+|+||||..++++++|++|+
T Consensus 2 ~~~~~~p~l~~~-~~~~~~~~~~~~l~~---~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~ 77 (202)
T cd03243 2 IKGGRHPVLLAL-TKGETFVPNDINLGS---GRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFT 77 (202)
T ss_pred cccccCCEEecc-ccCCceEeeeEEEcC---CeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEE
Confidence 689999999852 123579999999985 3689999999999999999999999999999999999999999999999
Q ss_pred ecCCccchhhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHH-hhcccCceEEEehhhhcccc
Q 001077 1076 RMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSG-FQSLAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1076 RIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~-~~~l~~~~~~~th~~~~~~~ 1153 (1162)
+++..|++..+.|+|+.||.+++.|+..++..+|+|+||.++||++.++.++.+++.+ +.+....++++||+......
T Consensus 78 ~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~ 156 (202)
T cd03243 78 RIGAEDSISDGRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADL 156 (202)
T ss_pred EecCcccccCCceeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999887655 55567789999999855443
No 25
>PF05192 MutS_III: MutS domain III C-terminus.; InterPro: IPR007696 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the core domain (domain 3) found in proteins of the MutS family. The core domain of MutS adopts a multi-helical structure comprised of two subdomains, which are interrupted by the clamp domain. Two of the helices in the core domain comprise the levers that extend towards the DNA. This domain is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 1FW6_A ....
Probab=99.90 E-value=8.6e-23 Score=218.98 Aligned_cols=91 Identities=47% Similarity=0.776 Sum_probs=79.7
Q ss_pred HHHHHHccCccccCCCCCcccHHHHHhhhcChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhcCCchhHHHHHHHhCCC
Q 001077 651 APALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRL 730 (1162)
Q Consensus 651 ~~Tl~~LEI~~~~~~g~~~gSL~~lLn~~~T~~GkRlLr~wl~~PL~d~~~I~~R~daVe~l~~~~~~~~~~lr~~L~~l 730 (1162)
++|+++||||++.++|+.+||||++||+|.|++|+|+||+||++|++|+++|++||++|++|.. |..+...++..|+++
T Consensus 1 ~~Tl~~L~i~~~~~~~~~~~sL~~~ln~t~T~~Gkr~L~~~l~~P~~d~~~I~~R~~~v~~~~~-n~~~~~~~~~~l~~~ 79 (204)
T PF05192_consen 1 ANTLKSLEIFENSRSGKKKGSLFSLLNRTSTPMGKRLLRSWLLQPLTDIEEIEKRQDAVEEFLQ-NEELREELRSILKKI 79 (204)
T ss_dssp HHHHHHTTSSSBTTTSSSSTSHHHHH---SSHHHHHHHHHHHHS-BS-HHHHHHHHHHHHHHHH-THHHHHHHHHHHTTC
T ss_pred ChhHHhccCCCCCCCCCCCCcHHHHHhcCCChHHHHHHHHHHhCccchHHHHHHHHHHHHHHHH-hhhHhhhhhhhhhcc
Confidence 5899999999998888889999999999999999999999999999999999999999999996 667778899999999
Q ss_pred CcHHHHHHHHhc
Q 001077 731 PDMERLLARLFA 742 (1162)
Q Consensus 731 pDleRll~ri~~ 742 (1162)
+|+++++.++..
T Consensus 80 ~di~~~l~~l~~ 91 (204)
T PF05192_consen 80 PDIERILKRLRS 91 (204)
T ss_dssp -SHHHHHHHHHT
T ss_pred chHHHHHHHHHH
Confidence 999999999854
No 26
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.88 E-value=1.3e-22 Score=210.48 Aligned_cols=135 Identities=36% Similarity=0.420 Sum_probs=120.2
Q ss_pred EeeccCCccccccCCCCcccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHH----------cCCcccCCcc
Q 001077 996 AKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ----------VGADVPAEIF 1065 (1162)
Q Consensus 996 i~~~RHP~le~~~~~~~~fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQ----------iG~fVPA~~a 1065 (1162)
|..++||.+ ++|||+.+.. .++.+|||||||||||+||++++++.|+| .||+|||.++
T Consensus 2 i~~~~~~~~---------~~~~~i~~~~---~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 69 (162)
T cd03227 2 IVLGRFPSY---------FVPNDVTFGE---GSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSA 69 (162)
T ss_pred ceeCCCCEE---------EeccEEecCC---CCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEE
Confidence 567899986 7999999974 36899999999999999999999999999 9999999998
Q ss_pred ccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCC--CCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEE
Q 001077 1066 EISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSAT--RNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFL 1143 (1162)
Q Consensus 1066 ~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT--~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~ 1143 (1162)
.+ ||++++ .|+++.++..++.+|..++ +.+|+||||+++||++.++.+++.++.++......+++
T Consensus 70 ~~-----i~~~~~--------lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii 136 (162)
T cd03227 70 EL-----IFTRLQ--------LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIV 136 (162)
T ss_pred EE-----ehheee--------ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 87 888877 8889999999999999876 89999999999999999999999999886443668999
Q ss_pred Eehhhhcccccc
Q 001077 1144 STLFIKCNAVDC 1155 (1162)
Q Consensus 1144 ~th~~~~~~~~~ 1155 (1162)
+||+..+....+
T Consensus 137 ~TH~~~~~~~~d 148 (162)
T cd03227 137 ITHLPELAELAD 148 (162)
T ss_pred EcCCHHHHHhhh
Confidence 999997655544
No 27
>PF05188 MutS_II: MutS domain II; InterPro: IPR007860 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the connector domain (domain 2) found in proteins of the MutS family. The structure of the MutS connector domain consists of a parallel beta-sheet surrounded by four alpha helices, which is similar to the structure of the Holliday junction resolvase ruvC.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 2WTU_A ....
Probab=99.35 E-value=8.5e-12 Score=125.24 Aligned_cols=130 Identities=25% Similarity=0.382 Sum_probs=83.7
Q ss_pred cEEEEEEecCCCCCCCCCCceEEEEEEEcCCCeEEEEEEcCccchhHHHHHHHccCccEEEecCCCCChHHHHHHHhccC
Q 001077 453 SYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTR 532 (1162)
Q Consensus 453 ~yllaI~e~~~~~~~~~~~~~~Gva~vD~sTg~~~l~~f~Dd~~~s~L~t~L~~~~P~EIi~~~~~~s~~t~~~l~~~~~ 532 (1162)
|||+||.++ . ....||+||+|++||+|++++|.| +++|.+.|.+++|+|||++.+..+......+.....
T Consensus 1 Nyl~aI~~~-~------~~~~~gla~~D~sTGe~~~~~~~d---~~~L~~~L~~~~P~EIi~~~~~~~~~~~~~~~~~~~ 70 (137)
T PF05188_consen 1 NYLAAIYEK-N------DEDSYGLAYIDLSTGEFYVTEFED---YSELKSELARLSPREIIIPEGFSSSDISALLSSLKN 70 (137)
T ss_dssp -EEEEEEEE-T------CSSEEEEEEEETTTTEEEEEEEEC---HHHHHHHHHHH-ESEEEEETTCSHHHHHHHHHCCTT
T ss_pred CEEEEEEEe-c------CCCEEEEEEEECCCCEEEEEEeCC---HHHHHHHHHhcCCeEEEEcCCCcccccchhhhhhcc
Confidence 699999985 1 235699999999999999999998 899999999999999999988765433111211111
Q ss_pred CCccccccCCccccChhhhHHHHHHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHH
Q 001077 533 NPLVNDLVPLSEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTL 612 (1162)
Q Consensus 533 ~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall 612 (1162)
........+. .+++.....+.+..+|..... ...+ + ....+.+++|+|++|
T Consensus 71 ~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~---------------~~~~---~----------~~~~~~~~~Al~all 121 (137)
T PF05188_consen 71 SFFKVTETPS-WYFDSEFASEDIEEQFGVADL---------------DGFG---L----------EEDKELALSALGALL 121 (137)
T ss_dssp TCCEEEEETC-GGGSHHHHHHHHHHHCTSSST---------------CCCT---T----------GGGGHHHHHHHHHHH
T ss_pred ccceeeecch-hhhhhHHHHHHHHHhhccccc---------------cccC---c----------cCCCHHHHHHHHHHH
Confidence 1111112222 233444555666665532110 0000 0 013578999999999
Q ss_pred HHHHHhccc
Q 001077 613 FYLKKSFLD 621 (1162)
Q Consensus 613 ~YL~~~~~~ 621 (1162)
.||+.++.+
T Consensus 122 ~Yl~~t~~~ 130 (137)
T PF05188_consen 122 KYLEETQKS 130 (137)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHHCcc
Confidence 999988765
No 28
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=99.28 E-value=4.3e-11 Score=111.95 Aligned_cols=92 Identities=41% Similarity=0.554 Sum_probs=86.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEeCCceEEEEccccccCCCCCcEEEeeeccceEEEeChHHH
Q 001077 837 GVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIK 916 (1162)
Q Consensus 837 G~d~~lD~~~~~l~~i~~~L~~~l~~~~~~l~~~~i~~~~~~~~~y~iev~~~~~~~vp~~~~~~ss~k~~~ry~tp~l~ 916 (1162)
|+|++||.+++.+.+++++|+++++++++.++.+.++|..+++.+|+|+||.....++|.+|+..+++++..||+||++.
T Consensus 1 g~d~~Ld~~~~~~~~~~~~l~~~~~~~~~~~~~~~lk~~~~~~~gy~i~v~~~~~~~~p~~~~~~~~~k~~~rf~t~~l~ 80 (92)
T PF05190_consen 1 GFDEELDELREEYEEIEEELEELLEEIRKKLGIPSLKLVYIPKRGYLIEVPKSDEKKLPKDFIIVSSTKSGVRFTTPELK 80 (92)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-TTBEEEEETTTEEEEEEETCCGGGSTTTEEEEEEESSEEEEECHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEcCceEEEEEEEccccccCCCceEEEEEEcCcEEEECHHHH
Confidence 78999999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred HHHHHhHHHHHH
Q 001077 917 KLLGELSQAESE 928 (1162)
Q Consensus 917 ~l~~el~~~~~~ 928 (1162)
+|+.++.+++++
T Consensus 81 ~L~~~~~~~~ee 92 (92)
T PF05190_consen 81 ELNEELKEAEEE 92 (92)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999988764
No 29
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=99.12 E-value=8.6e-11 Score=96.02 Aligned_cols=48 Identities=33% Similarity=0.686 Sum_probs=38.7
Q ss_pred ccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEccCCchhhcccCCceE
Q 001077 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKI 154 (1162)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~~e~~ 154 (1162)
-.|.+|++|||+++.||+|.|++||..++.|.|.|+||++ ++|...+|
T Consensus 7 ~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGte--l~lke~di 54 (55)
T PF09465_consen 7 AIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGTE--LELKENDI 54 (55)
T ss_dssp -SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-E--EEEECCCE
T ss_pred cCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCCE--EEeccccc
Confidence 4799999999999999999999999999999999999998 55555554
No 30
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=98.46 E-value=1.4e-08 Score=122.29 Aligned_cols=209 Identities=11% Similarity=-0.025 Sum_probs=142.0
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCC------ccceeEc
Q 001077 912 TPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATAELDALISLAIASDF-YEGP------TCRPVIL 984 (1162)
Q Consensus 912 tp~l~~l~~el~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~-~~~~------~~rP~~~ 984 (1162)
+.+-..+..++.+++..+..++..+. ..+....+.+.+++..+..+=.+.-.|.+|-. |-.+ .-|=.+.
T Consensus 543 N~e~~~~qk~Y~~~Q~~ivrevikia----~tY~Ppleal~~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~gs~rl~l~ 618 (902)
T KOG0219|consen 543 NDEFMSLQKEYDEAQNEIVREIIKIA----ATYTPPLEALNQVLAHLDVFVSFAHAATVAPIPYVRPKLLPLGSKRLELK 618 (902)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----hhcCCcHHHHHHHHHHHHhheeehhhcccCCCCccCccccccchhHHHHH
Confidence 44556677778877777666554443 22222333333333333333333333332210 1001 0011111
Q ss_pred CCCCCCCCcEEEeeccCCccccccCCCCcccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCC-
Q 001077 985 DSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE- 1063 (1162)
Q Consensus 985 ~~~~~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~- 1063 (1162)
. ...|+++ .+.+||+++++. .-.+.|+|+.+-.. ..-....|||||+|++|||+|||..|-++++||.||+.
T Consensus 619 ~---~rHp~lE-~Qd~~~fIpNdv--~le~~~~~~~IiTG-pNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~IvD~I 691 (902)
T KOG0219|consen 619 Q---SRHPVLE-GQDEIPFIPNDV--VLEKGKCRMLIITG-PNMGGKSTYIRQVGVIVLMAQIGCFVPCESATISIVDGI 691 (902)
T ss_pred h---cccchhh-ccccCCCCCCcc--ccccCCceEEEEeC-CCcCccchhhhhhhHHHHHHHhCCceehhhcCCchhhHH
Confidence 1 1223333 467999998642 12577999987431 22346799999999999999999999999999999987
Q ss_pred ccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHH
Q 001077 1064 IFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSS 1132 (1162)
Q Consensus 1064 ~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~ 1132 (1162)
.++.+.=| +-.+-++.+....+.++|+.+|.+...++.-++.++....+|.|+++++.++..++|+..
T Consensus 692 l~RVGA~D-~q~kG~STFM~Emleta~Ilr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~~ki~c 759 (902)
T KOG0219|consen 692 LTRVGAGD-SQLKGISTFMAEMLETASILRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIATKIGC 759 (902)
T ss_pred Hhhhccch-hhhcchHHHHHHHHHHHHHHHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHHHHHhH
Confidence 56666666 555678899999999999999999999999999999999999999999999999998743
No 31
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.45 E-value=1.1e-06 Score=90.65 Aligned_cols=119 Identities=24% Similarity=0.218 Sum_probs=77.0
Q ss_pred ccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcce-e--------eeecCCccchh
Q 001077 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDR-I--------FVRMGAKDHIM 1084 (1162)
Q Consensus 1014 fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~Dr-I--------fTRIGa~D~i~ 1084 (1162)
+...|+.+.. ..+++|+||||+||||+||.++ |...| ..-++.+-+. + ...++--..
T Consensus 15 l~~~~~~i~~---g~~~~i~G~nGsGKStll~~l~--------g~~~~-~~G~i~~~~~~~~~~~~~~~~~~i~~~~q-- 80 (157)
T cd00267 15 LDNVSLTLKA---GEIVALVGPNGSGKSTLLRAIA--------GLLKP-TSGEILIDGKDIAKLPLEELRRRIGYVPQ-- 80 (157)
T ss_pred EeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHh--------CCCCC-CccEEEECCEEcccCCHHHHHhceEEEee--
Confidence 3344566653 3689999999999999999997 66544 3333322211 0 000110001
Q ss_pred hcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1085 AGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1085 ~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
.|+=+.....++..| +....++||||.-.|.+......+...+.++.+...+++++||....
T Consensus 81 --lS~G~~~r~~l~~~l--~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 142 (157)
T cd00267 81 --LSGGQRQRVALARAL--LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPEL 142 (157)
T ss_pred --CCHHHHHHHHHHHHH--hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 444443333344444 56789999999999999988888888887765545689999998843
No 32
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.33 E-value=1.2e-06 Score=92.33 Aligned_cols=127 Identities=19% Similarity=0.196 Sum_probs=78.3
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCC-----cccCCccc-cCCcc--eeeeecCCc----cchhhcccchHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGA-----DVPAEIFE-ISPVD--RIFVRMGAK----DHIMAGQSTFLTEL 1094 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~-----fVPA~~a~-l~i~D--rIfTRIGa~----D~i~~g~STFmvEM 1094 (1162)
..++.|+|||++||||+||.+. ..-|- ..+..... +..++ ....++|-. |.-....|.-+.-.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il-----~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qr 95 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL-----YASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQR 95 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh-----hcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHH
Confidence 4689999999999999999652 11121 11111000 11100 012334422 23334456666666
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccceEe
Q 001077 1095 SETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDCFQL 1158 (1162)
Q Consensus 1095 ~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~~~~ 1158 (1162)
..++.+|-.-.+.+++||||--.|-+...-..|...+.++.+...+++++||........+..+
T Consensus 96 l~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~ 159 (176)
T cd03238 96 VKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWII 159 (176)
T ss_pred HHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 6666666543337899999999999988888887777776656778999999986544444433
No 33
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.26 E-value=5.8e-06 Score=88.83 Aligned_cols=132 Identities=20% Similarity=0.215 Sum_probs=86.5
Q ss_pred eEEEEccCCCChhHHHHHHHHHHH--------------HHHcCCc--ccCCccccCC----------------cceeeee
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVI--------------LAQVGAD--VPAEIFEISP----------------VDRIFVR 1076 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivI--------------LAQiG~f--VPA~~a~l~i----------------~DrIfTR 1076 (1162)
+.+|+|||++||||+|+.++.+.= +-+-|.- .++..+.+++ ++.++.+
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~~~~~~l~~ 103 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDVSEIIEA 103 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehhhHHHHHhC
Confidence 789999999999999999976531 0001111 1111122211 1223333
Q ss_pred cCCccchhhcccchHHHHHHHHHHHhc--CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhccccc
Q 001077 1077 MGAKDHIMAGQSTFLTELSETALMLSS--ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVD 1154 (1162)
Q Consensus 1077 IGa~D~i~~g~STFmvEM~Eta~IL~~--AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~ 1154 (1162)
-+..|......|.-+.-+..++..|-. ..+..++||||--.|-++..-..+...+.++.+ ..+++++||........
T Consensus 104 ~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~~~~~~ 182 (197)
T cd03278 104 PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK-ETQFIVITHRKGTMEAA 182 (197)
T ss_pred CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHhhc
Confidence 233455556677777777778887653 456689999999999998888887777766654 56799999999665556
Q ss_pred ceEeeec
Q 001077 1155 CFQLTIT 1161 (1162)
Q Consensus 1155 ~~~~~~~ 1161 (1162)
+.-+.|+
T Consensus 183 d~v~~~~ 189 (197)
T cd03278 183 DRLYGVT 189 (197)
T ss_pred ceEEEEE
Confidence 6655554
No 34
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.22 E-value=1.2e-05 Score=84.82 Aligned_cols=110 Identities=15% Similarity=0.025 Sum_probs=76.0
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCCC
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATR 1106 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT~ 1106 (1162)
..++.|.|||++||||+||.++ |..-|. +-++.+-+.-...+- +.. ..|.-+.-...++..|- ..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~--------Gl~~p~-~G~i~~~g~~i~~~~--q~~--~LSgGq~qrv~laral~--~~ 89 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILA--------GQLIPN-GDNDEWDGITPVYKP--QYI--DLSGGELQRVAIAAALL--RN 89 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHH--------cCCCCC-CcEEEECCEEEEEEc--ccC--CCCHHHHHHHHHHHHHh--cC
Confidence 3589999999999999999988 766553 344433221111111 111 16666776666776664 56
Q ss_pred CcEEEEcCCCCCCChhhHHHHHHHHHHhhccc-CceEEEehhhhcc
Q 001077 1107 NSLVVLDELGRGTSTSDGQAIAVFSSGFQSLA-GSQFLSTLFIKCN 1151 (1162)
Q Consensus 1107 ~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~-~~~~~~th~~~~~ 1151 (1162)
..++||||--.|-+..--..+.-.+.++.+-. .+++++||.....
T Consensus 90 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~ 135 (177)
T cd03222 90 ATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVL 135 (177)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHH
Confidence 78999999999998887777777776665443 6899999998543
No 35
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.20 E-value=7.6e-06 Score=85.17 Aligned_cols=118 Identities=20% Similarity=0.173 Sum_probs=73.9
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhc------ccchHHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAG------QSTFLTELSETALM 1100 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g------~STFmvEM~Eta~I 1100 (1162)
..++.|+|||++||||+||.++ |..-| .+.++-+-+.=..+....+..... .|.=+.-...++..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~--------G~~~~-~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~lara 96 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILS--------GLYKP-DSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARA 96 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHh--------CCCCC-CCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHH
Confidence 4589999999999999999998 76544 333333222111111111111110 34444444444443
Q ss_pred HhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh-cccccc
Q 001077 1101 LSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK-CNAVDC 1155 (1162)
Q Consensus 1101 L~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~-~~~~~~ 1155 (1162)
| +...+++||||--.|-+..--..+.-.+.++.+...+++++||... +..+.+
T Consensus 97 l--~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d 150 (163)
T cd03216 97 L--ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIAD 150 (163)
T ss_pred H--hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 3 5678999999999999887777777767666555678999999985 455444
No 36
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.19 E-value=8e-06 Score=85.80 Aligned_cols=111 Identities=21% Similarity=0.270 Sum_probs=72.5
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcc------------e---------eeeecCCccchhh
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVD------------R---------IFVRMGAKDHIMA 1085 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~D------------r---------IfTRIGa~D~i~~ 1085 (1162)
..++.|+|||++||||+||.++ |..-|. +-++.+-+ + +|-.+...|++.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~--------G~~~~~-~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~- 95 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIIL--------GLLKPD-SGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK- 95 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHh--------CCCCCC-CeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh-
Confidence 4589999999999999999987 654332 22211111 0 111111112221
Q ss_pred cccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1086 GQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1086 g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
.|.-+.-...++..| +.+..++|+||.-.|-+..--..+...+..+.+...+++++||....
T Consensus 96 -LS~G~~qrv~laral--~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~ 157 (173)
T cd03230 96 -LSGGMKQRLALAQAL--LHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEE 157 (173)
T ss_pred -cCHHHHHHHHHHHHH--HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
Confidence 455555555555555 57889999999999998888777777777765445689999999853
No 37
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.14 E-value=7.8e-06 Score=86.46 Aligned_cols=119 Identities=19% Similarity=0.170 Sum_probs=76.7
Q ss_pred ceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCcccc-------------------CCcceeeeecC
Q 001077 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEI-------------------SPVDRIFVRMG 1078 (1162)
Q Consensus 1018 Di~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l-------------------~i~DrIfTRIG 1078 (1162)
++.+.. ..++.|+|||++||||+||.++ |..-|-+ -++ +.+-.++.++|
T Consensus 19 ~~~i~~---G~~~~l~G~nGsGKStLl~~i~--------G~~~~~~-G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~g 86 (180)
T cd03214 19 SLSIEA---GEIVGILGPNGAGKSTLLKTLA--------GLLKPSS-GEILLDGKDLASLSPKELARKIAYVPQALELLG 86 (180)
T ss_pred EEEECC---CCEEEEECCCCCCHHHHHHHHh--------CCCCCCC-cEEEECCEECCcCCHHHHHHHHhHHHHHHHHcC
Confidence 445542 4589999999999999999998 6654432 222 11111233334
Q ss_pred Cccchh---hcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcc-cCceEEEehhhhc
Q 001077 1079 AKDHIM---AGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSL-AGSQFLSTLFIKC 1150 (1162)
Q Consensus 1079 a~D~i~---~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l-~~~~~~~th~~~~ 1150 (1162)
-.+.+. ...|.=+.-...++..| +.+..++|+||--.|-+...-..|.-.+.++.+- ..+++++||....
T Consensus 87 l~~~~~~~~~~LS~G~~qrl~laral--~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 87 LAHLADRPFNELSGGERQRVLLARAL--AQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred CHhHhcCCcccCCHHHHHHHHHHHHH--hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 443332 23444444333344433 5788999999999999987777777777666543 5689999998864
No 38
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.14 E-value=1.7e-05 Score=80.80 Aligned_cols=110 Identities=24% Similarity=0.168 Sum_probs=72.2
Q ss_pred ceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHH
Q 001077 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSET 1097 (1162)
Q Consensus 1018 Di~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Et 1097 (1162)
|+.+.. ..++.|+|||++||||++|.++ |..-| .+-++.+-++ .+++--- ..|.-+.-...+
T Consensus 20 ~~~~~~---Ge~~~i~G~nGsGKStLl~~l~--------G~~~~-~~G~i~~~~~--~~i~~~~----~lS~G~~~rv~l 81 (144)
T cd03221 20 SLTINP---GDRIGLVGRNGAGKSTLLKLIA--------GELEP-DEGIVTWGST--VKIGYFE----QLSGGEKMRLAL 81 (144)
T ss_pred EEEECC---CCEEEEECCCCCCHHHHHHHHc--------CCCCC-CceEEEECCe--EEEEEEc----cCCHHHHHHHHH
Confidence 555543 4589999999999999999987 76544 3443433221 0111100 066666666666
Q ss_pred HHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1098 ALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1098 a~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+..| +....++|+||.-.|-+...-..+.-.+ .++..+++++||....
T Consensus 82 aral--~~~p~illlDEP~~~LD~~~~~~l~~~l---~~~~~til~~th~~~~ 129 (144)
T cd03221 82 AKLL--LENPNLLLLDEPTNHLDLESIEALEEAL---KEYPGTVILVSHDRYF 129 (144)
T ss_pred HHHH--hcCCCEEEEeCCccCCCHHHHHHHHHHH---HHcCCEEEEEECCHHH
Confidence 6666 5677899999999998876555554433 3445689999998743
No 39
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.14 E-value=1.2e-05 Score=85.15 Aligned_cols=119 Identities=17% Similarity=0.134 Sum_probs=75.9
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcc--------------------------eeeeecCCc
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVD--------------------------RIFVRMGAK 1080 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~D--------------------------rIfTRIGa~ 1080 (1162)
..++.|+|||++||||+||.++ |.+-|- +-++.+-+ .+|-.+-..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~--------G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~ 96 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALF--------GLRPPA-SGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVA 96 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHh--------CCCCCC-CceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHH
Confidence 4589999999999999999998 554332 21111110 112222223
Q ss_pred cchhhc--ccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhh-hcccccce
Q 001077 1081 DHIMAG--QSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFI-KCNAVDCF 1156 (1162)
Q Consensus 1081 D~i~~g--~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~-~~~~~~~~ 1156 (1162)
|++.-+ .|.-+.-...++..| +....++||||--.|-+..--..+.-.+..+.+...+++++||.. .+..+.+.
T Consensus 97 e~l~~~~~LS~G~~qrl~la~al--~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~ 173 (182)
T cd03215 97 ENIALSSLLSGGNQQKVVLARWL--ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDR 173 (182)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHH--ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE
Confidence 333222 344444333444444 568899999999999998888888777777655467899999997 45555443
No 40
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.11 E-value=2.1e-05 Score=82.47 Aligned_cols=111 Identities=18% Similarity=0.123 Sum_probs=69.6
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcce----------------------eeeecCCccchh
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDR----------------------IFVRMGAKDHIM 1084 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~Dr----------------------IfTRIGa~D~i~ 1084 (1162)
..++.|+|||++||||+||.++ |..-|. +.++.+-.. +|. .-..|++
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~--------G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l- 96 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLL--------RLYDPT-SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI- 96 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHH--------cCCCCC-CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHh-
Confidence 4689999999999999999998 554332 222211110 110 0111222
Q ss_pred hcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccc
Q 001077 1085 AGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1085 ~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~ 1153 (1162)
.|.=+.-...++..| +.+..++||||--.|-+...-..|.-.+.++.+ ..+++++||.......
T Consensus 97 --LS~G~~~rl~la~al--~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~ 160 (171)
T cd03228 97 --LSGGQRQRIAIARAL--LRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLSTIRD 160 (171)
T ss_pred --hCHHHHHHHHHHHHH--hcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHHh
Confidence 444444444444444 567899999999999998776666666665543 4678999998854433
No 41
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.11 E-value=2.5e-05 Score=82.64 Aligned_cols=129 Identities=19% Similarity=0.245 Sum_probs=83.4
Q ss_pred eEEEEccCCCChhHHHHHHHHHHHHH-------------HcCCcccCCccccCCc-ce-eeeec-CCccchhhcccchHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVILA-------------QVGADVPAEIFEISPV-DR-IFVRM-GAKDHIMAGQSTFLT 1092 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILA-------------QiG~fVPA~~a~l~i~-Dr-IfTRI-Ga~D~i~~g~STFmv 1092 (1162)
+.+|+|||++|||++|..++++.... +-+.--++.+|.+.+. +. +|.-. |...-| .|.=+.
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~---LS~Ge~ 100 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKVEQI---LSGGEK 100 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCCcCccc---CCHHHH
Confidence 88999999999999999998754211 0011112333333221 10 11111 222222 666777
Q ss_pred HHHHHHHHHhc--CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccceEeee
Q 001077 1093 ELSETALMLSS--ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDCFQLTI 1160 (1162)
Q Consensus 1093 EM~Eta~IL~~--AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~~~~~~ 1160 (1162)
....++.+|.. ....+++|+||.-.|-+...-..+.-.+.++.+-..+++++||...+....+..+.|
T Consensus 101 ~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i 170 (178)
T cd03239 101 SLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGV 170 (178)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEE
Confidence 77778877753 456789999999999999888877776666544446799999998766666655554
No 42
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.09 E-value=2.6e-05 Score=82.24 Aligned_cols=114 Identities=21% Similarity=0.155 Sum_probs=74.2
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCcccc------------------CCcc---eeeeecCCccchhh
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEI------------------SPVD---RIFVRMGAKDHIMA 1085 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l------------------~i~D---rIfTRIGa~D~i~~ 1085 (1162)
..++.|+|||++||||+||.++ |..-|- +-++ +++. .+| ..-..|++..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~--------G~~~~~-~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~~~i~~ 97 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLT--------GDLKPQ-QGEITLDGVPVSDLEKALSSLISVLNQRPYLF-DTTLRNNLGR 97 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHh--------ccCCCC-CCEEEECCEEHHHHHHHHHhhEEEEccCCeee-cccHHHhhcc
Confidence 4689999999999999999998 543332 2111 1111 112 1223344444
Q ss_pred cccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccc
Q 001077 1086 GQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1086 g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~ 1153 (1162)
..|.-+.-...++..| +....++||||.-.|-++..-..|.-.+.++.+ ..+++++||.......
T Consensus 98 ~LS~G~~qrv~laral--~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~ 162 (178)
T cd03247 98 RFSGGERQRLALARIL--LQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK-DKTLIWITHHLTGIEH 162 (178)
T ss_pred cCCHHHHHHHHHHHHH--hcCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHHh
Confidence 5565554444444444 578899999999999998777777766666643 5678999999855443
No 43
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.08 E-value=1.3e-05 Score=85.63 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=72.2
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcc-cCCccccCC------------------cceeeeecCCccchhh--
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV-PAEIFEISP------------------VDRIFVRMGAKDHIMA-- 1085 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fV-PA~~a~l~i------------------~DrIfTRIGa~D~i~~-- 1085 (1162)
..++.|+|||++||||+||.++ |.+. |+.+.++-+ -..+|..+-..|++.-
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~--------G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 104 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLA--------GRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSA 104 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHh--------CCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHH
Confidence 4689999999999999999998 3321 112221111 0112222233344432
Q ss_pred ---cccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1086 ---GQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1086 ---g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
..|.-+.-...++..| +.+..++|+||--.|-+..--..+...+.++.+...+++++||...
T Consensus 105 ~~~~LSgGe~qrv~la~al--~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 105 LLRGLSVEQRKRLTIGVEL--AAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPS 169 (192)
T ss_pred HHhcCCHHHhHHHHHHHHH--hcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCCh
Confidence 3455444444445444 4677899999999999887777776666666555678999999875
No 44
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.06 E-value=2.4e-05 Score=81.64 Aligned_cols=117 Identities=17% Similarity=0.062 Sum_probs=75.7
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccC--------Ccc---eeeeecCCccchh----hcccchH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEIS--------PVD---RIFVRMGAKDHIM----AGQSTFL 1091 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~--------i~D---rIfTRIGa~D~i~----~g~STFm 1091 (1162)
..++.|+|||++||||+||.++ |..-|- +-++. .+. .++ .....|++. ...|.-+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~--------G~~~~~-~G~i~~~~~~~i~~~~q~~~~~-~~tv~~nl~~~~~~~LS~G~ 96 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALA--------GLWPWG-SGRIGMPEGEDLLFLPQRPYLP-LGTLREQLIYPWDDVLSGGE 96 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHh--------cCCCCC-CceEEECCCceEEEECCCCccc-cccHHHHhhccCCCCCCHHH
Confidence 4589999999999999999988 433222 11111 100 011 122334432 3467766
Q ss_pred HHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccceEe
Q 001077 1092 TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDCFQL 1158 (1162)
Q Consensus 1092 vEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~~~~ 1158 (1162)
.-...++..| +.+..++|+||--.|-+...-..|...+.+ +..+++++||......+.+.-+
T Consensus 97 ~~rv~laral--~~~p~~lllDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsh~~~~~~~~d~i~ 158 (166)
T cd03223 97 QQRLAFARLL--LHKPKFVFLDEATSALDEESEDRLYQLLKE---LGITVISVGHRPSLWKFHDRVL 158 (166)
T ss_pred HHHHHHHHHH--HcCCCEEEEECCccccCHHHHHHHHHHHHH---hCCEEEEEeCChhHHhhCCEEE
Confidence 6666666666 467899999999999888776666555544 3578999999987655554433
No 45
>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]
Probab=98.03 E-value=2.1e-06 Score=92.97 Aligned_cols=61 Identities=21% Similarity=0.395 Sum_probs=52.0
Q ss_pred ccccCccccCceEEEeccCCCeEEeEEEEe-ecCCCCeEEEEccCCc----hhhcccC---CceEEEEe
Q 001077 98 AKSYGEDVLRKRIRVYWPLDKAWYEGCVKS-FDKECNKHLVQYDDGE----DELLDLG---KEKIEWVQ 158 (1162)
Q Consensus 98 ~~~~~~~~vg~rv~v~wp~d~~~y~g~v~~-~~~~~~~h~v~Yddg~----~e~l~l~---~e~~~~~~ 158 (1162)
.....+++||++|..-||+++.||++.|+. |....++|.+.||..+ ++|++|. +|+|+|..
T Consensus 153 ~n~pp~slvgr~v~~k~pdk~~~te~iit~~~~~~E~~~~l~~~~~~~~~p~~wvdl~~I~p~DIrw~g 221 (273)
T KOG4675|consen 153 GNVPPESLVGRKVWIKWPDKRKFTEAIITQYDAEKEGHHLLVPDINDCNDPWEWVDLREISPEDIRWEG 221 (273)
T ss_pred ccCCchhhccccccccCcccccccccccccchhhhhhhhhcccccccccCCccccccccCCHHhccccC
Confidence 455567799999999999999999999999 5566678999998776 8888887 89999985
No 46
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.01 E-value=2.6e-05 Score=83.62 Aligned_cols=112 Identities=23% Similarity=0.265 Sum_probs=71.4
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCc--ccCCcccc----------------CCc---ceeeeecCCccchhh
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD--VPAEIFEI----------------SPV---DRIFVRMGAKDHIMA 1085 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~f--VPA~~a~l----------------~i~---DrIfTRIGa~D~i~~ 1085 (1162)
..++.|+|||++||||+||.++ |.. -|.+. ++ +.+ ..+|..+-..|++.-
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~--------Gl~~~~~~~G-~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~ 105 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALA--------GRRTGLGVSG-EVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMF 105 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHh--------CCCCCCCCce-EEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHH
Confidence 4689999999999999999998 544 33221 11 100 011212222233321
Q ss_pred -----cccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1086 -----GQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1086 -----g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
..|+=+.-...++..| +....++||||.-.|-+...-..+.-.+.++.....+++++||-..
T Consensus 106 ~~~~~~LS~G~~qrv~laral--~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 106 AAKLRGLSGGERKRVSIALEL--VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred HHHhccCCHHHHHHHHHHHHH--HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 3455554444455554 4677899999999999987777666666666555668999999873
No 47
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.00 E-value=4.5e-05 Score=80.13 Aligned_cols=117 Identities=17% Similarity=0.124 Sum_probs=71.2
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcce------------eeeecCCcc-----chhhc-cc
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDR------------IFVRMGAKD-----HIMAG-QS 1088 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~Dr------------IfTRIGa~D-----~i~~g-~S 1088 (1162)
..++.|+|||++||||+||.++ |..-|.+ -++.+-.. -..-+.... ++..+ .|
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~--------G~~~~~~-G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS 98 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLIL--------GLLRPTS-GRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILS 98 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHH--------hccCCCC-CeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcC
Confidence 4589999999999999999998 5443322 11111000 000001111 11111 33
Q ss_pred chHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhccccc
Q 001077 1089 TFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVD 1154 (1162)
Q Consensus 1089 TFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~ 1154 (1162)
.=+ ...++-+..-+++..++|+||--.|-+...-..+.-.+..+.+...+++++||........
T Consensus 99 ~G~--~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 162 (173)
T cd03246 99 GGQ--RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASA 162 (173)
T ss_pred HHH--HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 323 3334433444688899999999999998888777776766655456899999988544443
No 48
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.98 E-value=2.2e-05 Score=86.41 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=36.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFI 1148 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~ 1148 (1162)
|+...|+||||---|-+..--.+|.--+-++.+-..+++++||=+
T Consensus 155 ~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL 199 (254)
T COG1121 155 AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDL 199 (254)
T ss_pred ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 688899999999999998777777666666777777788888854
No 49
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.94 E-value=3.2e-05 Score=83.26 Aligned_cols=122 Identities=21% Similarity=0.156 Sum_probs=71.1
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCc-ccCCccccCCcce--------------e---------eeecCCccc
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD-VPAEIFEISPVDR--------------I---------FVRMGAKDH 1082 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~f-VPA~~a~l~i~Dr--------------I---------fTRIGa~D~ 1082 (1162)
..++.|+|||++||||+||.++ |.. .+..+.++-+-+. | |..+-..+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~--------G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~ 97 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIM--------GHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADF 97 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHh--------CCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHH
Confidence 4689999999999999999987 542 1112221111110 0 000000011
Q ss_pred h---hhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhccc--ccceE
Q 001077 1083 I---MAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNA--VDCFQ 1157 (1162)
Q Consensus 1083 i---~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~--~~~~~ 1157 (1162)
+ ....|.=+.-...++..| +....++||||--.|-+...-..+.-.+.++.+...+++++||...+.. +.+.-
T Consensus 98 l~~~~~~LS~G~~qrv~laral--~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i 175 (200)
T cd03217 98 LRYVNEGFSGGEKKRNEILQLL--LLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRV 175 (200)
T ss_pred HhhccccCCHHHHHHHHHHHHH--hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEE
Confidence 1 122333333333333333 5678899999999998877666665556556544568999999997655 45543
Q ss_pred e
Q 001077 1158 L 1158 (1162)
Q Consensus 1158 ~ 1158 (1162)
+
T Consensus 176 ~ 176 (200)
T cd03217 176 H 176 (200)
T ss_pred E
Confidence 3
No 50
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.93 E-value=8.5e-05 Score=78.44 Aligned_cols=113 Identities=20% Similarity=0.166 Sum_probs=68.4
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcce--------------eeeecCCccchhhc------
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDR--------------IFVRMGAKDHIMAG------ 1086 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~Dr--------------IfTRIGa~D~i~~g------ 1086 (1162)
..++.|+|||++||||+||.++ |.+-| .+.++.+-.. -..-+.....+..+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~--------G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~ 96 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIA--------GLEEP-DSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLEN 96 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHh--------CCCCC-CceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHh
Confidence 4589999999999999999988 65433 3222221110 00001111111111
Q ss_pred ----ccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcc-cCceEEEehhhhc
Q 001077 1087 ----QSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSL-AGSQFLSTLFIKC 1150 (1162)
Q Consensus 1087 ----~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l-~~~~~~~th~~~~ 1150 (1162)
.|.= |...++-+..-+....|+||||--.|-+..--.-+.-.+.++.+. ..+++++||....
T Consensus 97 l~~~lS~G--~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 163 (178)
T cd03229 97 IALGLSGG--QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDE 163 (178)
T ss_pred eeecCCHH--HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 2222 334444444446788999999999999877666666666665554 5689999998744
No 51
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.91 E-value=1.7e-05 Score=90.41 Aligned_cols=133 Identities=20% Similarity=0.262 Sum_probs=83.4
Q ss_pred ccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHH--------------------HHHHcCCcccCCc---------
Q 001077 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEI--------- 1064 (1162)
Q Consensus 1014 fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLiv--------------------ILAQiG~fVPA~~--------- 1064 (1162)
.+=||+.+.-. ...+..|.|||++||||+||.++=++ +..++| |||-+.
T Consensus 19 ~~l~~vs~~i~-~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig-y~~~~~~~~~~lT~~ 96 (293)
T COG1131 19 TALDGVSFEVE-PGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG-YVPQEPSLYPELTVR 96 (293)
T ss_pred EEEeceeEEEc-CCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE-EEccCCCCCccccHH
Confidence 45566666532 34689999999999999999987444 233444 444332
Q ss_pred ------cccC---------CcceeeeecCCccchhhcccchHHHHHHHHHH-HhcCCCCcEEEEcCCCCCCChhhHHHHH
Q 001077 1065 ------FEIS---------PVDRIFVRMGAKDHIMAGQSTFLTELSETALM-LSSATRNSLVVLDELGRGTSTSDGQAIA 1128 (1162)
Q Consensus 1065 ------a~l~---------i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~I-L~~AT~~SLVIlDELGRGTst~DG~AIA 1128 (1162)
|.+- .++++..++|-.+..-.-.++|..-|.+=..| +.-+...+|+||||--.|=++.--.-+-
T Consensus 97 e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~ 176 (293)
T COG1131 97 ENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIW 176 (293)
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHH
Confidence 1111 23345555555542211135555555543333 2335777999999999998887776666
Q ss_pred HHHHHhhccc-CceEEEehhh
Q 001077 1129 VFSSGFQSLA-GSQFLSTLFI 1148 (1162)
Q Consensus 1129 ~A~~~~~~l~-~~~~~~th~~ 1148 (1162)
-.+..+.+-. .+++++||..
T Consensus 177 ~~l~~l~~~g~~tvlissH~l 197 (293)
T COG1131 177 ELLRELAKEGGVTILLSTHIL 197 (293)
T ss_pred HHHHHHHhCCCcEEEEeCCcH
Confidence 6666666655 4899999988
No 52
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=4.3e-05 Score=81.79 Aligned_cols=123 Identities=25% Similarity=0.275 Sum_probs=78.9
Q ss_pred cceEEEEccCCCChhHHHHHHHHHH---------------H-------HHHcCCcc----cCCccccCCcceeeeecCCc
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAV---------------I-------LAQVGADV----PAEIFEISPVDRIFVRMGAK 1080 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv---------------I-------LAQiG~fV----PA~~a~l~i~DrIfTRIGa~ 1080 (1162)
..++.|-|||++||||+...++=.- | =|..|.|+ |++-.-+.+.| |-|.+.+
T Consensus 30 GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~--fLr~a~n 107 (251)
T COG0396 30 GEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSD--FLRAAMN 107 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHH--HHHHHHH
Confidence 4689999999999999988654100 0 04444443 33222222222 2222211
Q ss_pred cchhh--cccchHHHHHHHHHHHh--------------------------c-CCCCcEEEEcCCCCCCChhhHHHHHHHH
Q 001077 1081 DHIMA--GQSTFLTELSETALMLS--------------------------S-ATRNSLVVLDELGRGTSTSDGQAIAVFS 1131 (1162)
Q Consensus 1081 D~i~~--g~STFmvEM~Eta~IL~--------------------------~-AT~~SLVIlDELGRGTst~DG~AIA~A~ 1131 (1162)
..--. -..-|..+|.|.+..|. - +-...|+||||.=.|-+-.----||-.+
T Consensus 108 ~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i 187 (251)
T COG0396 108 ARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGI 187 (251)
T ss_pred hhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHH
Confidence 10000 03568888877665542 1 2357899999999999876666778888
Q ss_pred HHhhcccCceEEEehhhhcc
Q 001077 1132 SGFQSLAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1132 ~~~~~l~~~~~~~th~~~~~ 1151 (1162)
-.|.+....+.++|||-++.
T Consensus 188 ~~lr~~~~~~liITHy~rll 207 (251)
T COG0396 188 NALREEGRGVLIITHYQRLL 207 (251)
T ss_pred HHHhcCCCeEEEEecHHHHH
Confidence 88999999999999998654
No 53
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.88 E-value=3e-05 Score=81.23 Aligned_cols=132 Identities=20% Similarity=0.325 Sum_probs=82.2
Q ss_pred ceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHc-----CCcc---cCC-ccccCCc---ceeeeecCCccchhh
Q 001077 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQV-----GADV---PAE-IFEISPV---DRIFVRMGAKDHIMA 1085 (1162)
Q Consensus 1018 Di~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQi-----G~fV---PA~-~a~l~i~---DrIfTRIGa~D~i~~ 1085 (1162)
|+.+.. +...+..|-|||++||||+||.+|-+.+-.|= ||-. |.. .-.|++. -.||.||-+.+||.
T Consensus 20 dVSF~a-e~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~- 97 (245)
T COG4555 20 DVSFEA-EEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLK- 97 (245)
T ss_pred heeEEe-ccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHH-
Confidence 566654 34679999999999999999999965543321 1110 100 0123333 24788888888876
Q ss_pred cccchHHHHHHHHHH-----------------------------------Hhc--CCCCcEEEEcCCCCCCChhhHHHHH
Q 001077 1086 GQSTFLTELSETALM-----------------------------------LSS--ATRNSLVVLDELGRGTSTSDGQAIA 1128 (1162)
Q Consensus 1086 g~STFmvEM~Eta~I-----------------------------------L~~--AT~~SLVIlDELGRGTst~DG~AIA 1128 (1162)
|+.++..++.. +.. --..|++|+||-..|-+-.---=+-
T Consensus 98 ----~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~ 173 (245)
T COG4555 98 ----YFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFH 173 (245)
T ss_pred ----HHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHH
Confidence 44444433222 011 1467999999999887754444444
Q ss_pred HHHHHhhcccCceEEEehhh-hcccccc
Q 001077 1129 VFSSGFQSLAGSQFLSTLFI-KCNAVDC 1155 (1162)
Q Consensus 1129 ~A~~~~~~l~~~~~~~th~~-~~~~~~~ 1155 (1162)
-.+..++.-..+++++||-+ ...||-+
T Consensus 174 dfi~q~k~egr~viFSSH~m~EvealCD 201 (245)
T COG4555 174 DFIKQLKNEGRAVIFSSHIMQEVEALCD 201 (245)
T ss_pred HHHHHhhcCCcEEEEecccHHHHHHhhh
Confidence 44555566667899999988 5665544
No 54
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.88 E-value=3.4e-05 Score=82.97 Aligned_cols=120 Identities=21% Similarity=0.235 Sum_probs=84.5
Q ss_pred ccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcce-----eeeecCC---------
Q 001077 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDR-----IFVRMGA--------- 1079 (1162)
Q Consensus 1014 fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~Dr-----IfTRIGa--------- 1079 (1162)
-+=||+++.-. ..+++-+-|||++||||.+|++. | +.++.+.+|++..+ +..|||=
T Consensus 16 ~av~~isf~v~-~G~i~GllG~NGAGKTTtfRmIL--------g-lle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~ 85 (300)
T COG4152 16 KAVDNISFEVP-PGEIFGLLGPNGAGKTTTFRMIL--------G-LLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYP 85 (300)
T ss_pred eeecceeeeec-CCeEEEeecCCCCCccchHHHHh--------c-cCCccCceEEEcCcchhhhhhhhcccChhhhccCc
Confidence 34577777643 46899999999999999999987 3 34444555544441 2233332
Q ss_pred ----ccchhhcccchHHHHHH----------------------------------------HHHHHhcCCCCcEEEEcCC
Q 001077 1080 ----KDHIMAGQSTFLTELSE----------------------------------------TALMLSSATRNSLVVLDEL 1115 (1162)
Q Consensus 1080 ----~D~i~~g~STFmvEM~E----------------------------------------ta~IL~~AT~~SLVIlDEL 1115 (1162)
.|-|. |++++.- ++.++ -..-||||||-
T Consensus 86 k~tv~dql~-----yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisavi---HePeLlILDEP 157 (300)
T COG4152 86 KMTVEDQLK-----YLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVI---HEPELLILDEP 157 (300)
T ss_pred cCcHHHHHH-----HHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHh---cCCCEEEecCC
Confidence 22111 3333211 33333 46789999999
Q ss_pred CCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcc
Q 001077 1116 GRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1116 GRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~ 1151 (1162)
..|-++..--++--+|-++..-..+++++||-+.+.
T Consensus 158 FSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~v 193 (300)
T COG4152 158 FSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHV 193 (300)
T ss_pred ccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHH
Confidence 999999999999999999999999999999998543
No 55
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.86 E-value=3.3e-05 Score=83.57 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=39.3
Q ss_pred cCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc-ccccce
Q 001077 1103 SATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC-NAVDCF 1156 (1162)
Q Consensus 1103 ~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~-~~~~~~ 1156 (1162)
-+.+..++||||--.|-+...-..+.-.+.++.+...+++++||.... ..+.+.
T Consensus 141 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~ 195 (208)
T cd03268 141 LLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADR 195 (208)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCE
Confidence 356788999999999988777666666566665545688999999853 344443
No 56
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.86 E-value=4.4e-05 Score=83.32 Aligned_cols=64 Identities=14% Similarity=-0.015 Sum_probs=43.3
Q ss_pred ccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccc
Q 001077 1087 QSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1087 ~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~ 1153 (1162)
.|.-+.-...++..| +....|+||||--.|-+...-..+.-.+.++.+ ..+++++||.......
T Consensus 140 LS~G~~qr~~laral--~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~ 203 (221)
T cd03244 140 LSVGQRQLLCLARAL--LRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDTIID 203 (221)
T ss_pred CCHHHHHHHHHHHHH--hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHhh
Confidence 343333333344444 567889999999999988777767666665544 4678999998855443
No 57
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=97.83 E-value=4.3e-05 Score=83.16 Aligned_cols=136 Identities=19% Similarity=0.131 Sum_probs=77.3
Q ss_pred cceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCc----------ccCCccccCCc----ceeeee------
Q 001077 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD----------VPAEIFEISPV----DRIFVR------ 1076 (1162)
Q Consensus 1017 NDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~f----------VPA~~a~l~i~----DrIfTR------ 1076 (1162)
+++.+....+..+.+|.|||++||||+|+.++...+=...+.. .....+.++++ +.+|+-
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl 97 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGL 97 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCC
Confidence 5566643223468999999999999999999732110000000 01112222221 222211
Q ss_pred ------------cCCccch----hhcccchHHHHHHHHHHHhcC--------CCCcEEEEcCCCCCCChhhHHHHHHHHH
Q 001077 1077 ------------MGAKDHI----MAGQSTFLTELSETALMLSSA--------TRNSLVVLDELGRGTSTSDGQAIAVFSS 1132 (1162)
Q Consensus 1077 ------------IGa~D~i----~~g~STFmvEM~Eta~IL~~A--------T~~SLVIlDELGRGTst~DG~AIA~A~~ 1132 (1162)
.|.-+.+ ....|.=+.-...++..|-.. .+..++|+||.-.|.++..-..+.-.+.
T Consensus 98 ~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~ 177 (213)
T cd03279 98 DYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALE 177 (213)
T ss_pred CHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 1111111 112333344444455555321 2447999999999999988888877777
Q ss_pred HhhcccCceEEEehhhhccc
Q 001077 1133 GFQSLAGSQFLSTLFIKCNA 1152 (1162)
Q Consensus 1133 ~~~~l~~~~~~~th~~~~~~ 1152 (1162)
++.+...+++++||......
T Consensus 178 ~~~~~~~tii~itH~~~~~~ 197 (213)
T cd03279 178 LIRTENRMVGVISHVEELKE 197 (213)
T ss_pred HHHhCCCEEEEEECchHHHH
Confidence 77655678999999886443
No 58
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.81 E-value=3.7e-05 Score=81.93 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=37.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....|+||||--.|-+...-..+.-.+.++.+...+++++||....
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 143 AMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 46778999999999999887777776666665556789999998753
No 59
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.80 E-value=3.7e-05 Score=88.17 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=37.7
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....|+||||--.|-++.--..+.-.+.++.+...+++++||....
T Consensus 140 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~ 186 (302)
T TIGR01188 140 IHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEE 186 (302)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 46788999999999999887777777666665556789999998843
No 60
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.77 E-value=0.00013 Score=79.32 Aligned_cols=57 Identities=18% Similarity=0.033 Sum_probs=40.8
Q ss_pred cCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh-cccccceEee
Q 001077 1103 SATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK-CNAVDCFQLT 1159 (1162)
Q Consensus 1103 ~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~-~~~~~~~~~~ 1159 (1162)
-+.+..++||||--.|-+...-..+...+.++.+...+++++||... +..+.+..+.
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~ 209 (214)
T PRK13543 152 WLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLT 209 (214)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEE
Confidence 35678899999999998887777666655556555678999999883 4444444333
No 61
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.76 E-value=3e-05 Score=83.79 Aligned_cols=127 Identities=23% Similarity=0.290 Sum_probs=94.3
Q ss_pred ccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCc-----------------cccCCc-----c
Q 001077 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-----------------FEISPV-----D 1071 (1162)
Q Consensus 1014 fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~-----------------a~l~i~-----D 1071 (1162)
-.=||+.+.-. ...+..|-|||++||||+...+. |.|-|-.. ++++++ -
T Consensus 18 ~Al~~Vsl~v~-~Gei~~LIGPNGAGKTTlfNlit--------G~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~ 88 (250)
T COG0411 18 TAVNDVSLEVR-PGEIVGLIGPNGAGKTTLFNLIT--------GFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQIT 88 (250)
T ss_pred EEEeceeEEEc-CCeEEEEECCCCCCceeeeeeec--------ccccCCCceEEECCcccCCCCHHHHHhccceeecccc
Confidence 44577877642 45789999999999999999887 88877643 333332 2
Q ss_pred eeeeecCCccchhhcccc------------h---HHHHHH-------------------------------HHHHHhcCC
Q 001077 1072 RIFVRMGAKDHIMAGQST------------F---LTELSE-------------------------------TALMLSSAT 1105 (1162)
Q Consensus 1072 rIfTRIGa~D~i~~g~ST------------F---mvEM~E-------------------------------ta~IL~~AT 1105 (1162)
++|..|-.-||++-|..- + ..|+.| +|..| |+
T Consensus 89 rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArAL--a~ 166 (250)
T COG0411 89 RLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARAL--AT 166 (250)
T ss_pred cccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHH--hc
Confidence 678888888888776331 1 233333 34333 68
Q ss_pred CCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhcc
Q 001077 1106 RNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1106 ~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~~ 1151 (1162)
..-|+||||-..|-++.+---|+..+.++.+ ...+++++.|-+.+-
T Consensus 167 ~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~V 213 (250)
T COG0411 167 QPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLV 213 (250)
T ss_pred CCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHH
Confidence 8999999999999999999999999988887 447888999988643
No 62
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.76 E-value=6.9e-05 Score=81.63 Aligned_cols=54 Identities=9% Similarity=0.038 Sum_probs=39.8
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhcccccceE
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKCNAVDCFQ 1157 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~~~~~~~~ 1157 (1162)
+....++||||--.|-++.--..|.-.+.++.+ ...+++++||......+.+.-
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v 210 (218)
T cd03255 156 ANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRI 210 (218)
T ss_pred ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEE
Confidence 467789999999999988766666666666654 456899999998654444433
No 63
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.75 E-value=6.1e-05 Score=81.24 Aligned_cols=50 Identities=8% Similarity=0.018 Sum_probs=37.4
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~ 1153 (1162)
+....++||||--.|-++..-..+...+.++.+-..+++++||...+..+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 199 (206)
T TIGR03608 150 LKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQ 199 (206)
T ss_pred HcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 46789999999999988777666666665554445688999998865443
No 64
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.74 E-value=9.1e-05 Score=80.22 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=36.9
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+.+..++||||--.|-++.--..+.-.+.++.+...+++++||....
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~ 190 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMEL 190 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
Confidence 46778999999999999877777766666665445689999999853
No 65
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.74 E-value=6.7e-05 Score=81.43 Aligned_cols=47 Identities=9% Similarity=0.050 Sum_probs=37.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+.+..++||||--.|-++..-..+.-.+.++.+...+++++||....
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~ 198 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKEL 198 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 46788999999999998877777777676665446789999998743
No 66
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.73 E-value=9.3e-05 Score=79.30 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=34.8
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....++|+||.-.|-++.-=..+...+.+..+...+++++||....
T Consensus 139 ~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 185 (195)
T PRK13541 139 ACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS 185 (195)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccc
Confidence 56789999999999988776555555444444556789999998754
No 67
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.72 E-value=9.6e-05 Score=79.36 Aligned_cols=46 Identities=20% Similarity=0.119 Sum_probs=36.6
Q ss_pred cCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhh
Q 001077 1103 SATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFI 1148 (1162)
Q Consensus 1103 ~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~ 1148 (1162)
-+....++||||--.|-+...-..+.-.+.++.+...+++++||..
T Consensus 142 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~ 187 (198)
T TIGR01189 142 WLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQD 187 (198)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence 3567899999999999998777777666666655567899999976
No 68
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.70 E-value=0.00022 Score=76.90 Aligned_cols=122 Identities=17% Similarity=0.138 Sum_probs=67.7
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcC--------CcccCCcc--ccCCcceeee--ec------------CCccc
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG--------ADVPAEIF--EISPVDRIFV--RM------------GAKDH 1082 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG--------~fVPA~~a--~l~i~DrIfT--RI------------Ga~D~ 1082 (1162)
..++.|+|||++||||+||.++=+. -..-| .|||-... ..++.|.|.- ++ +..+.
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~~-~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~ 109 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGEL-EKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPD 109 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcC-CCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHH
Confidence 4689999999999999999988332 11222 23333211 1222232221 00 11000
Q ss_pred h--------------hhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHH-HHhhcccCceEEEehh
Q 001077 1083 I--------------MAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFS-SGFQSLAGSQFLSTLF 1147 (1162)
Q Consensus 1083 i--------------~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~-~~~~~l~~~~~~~th~ 1147 (1162)
+ ....|.-+.--..++..| +....++|+||--.|-++..-.-+...+ ..+..-..+++++||.
T Consensus 110 ~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral--~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~ 187 (204)
T cd03250 110 LEILPDGDLTEIGEKGINLSGGQKQRISLARAV--YSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQ 187 (204)
T ss_pred HHhccCcccceecCCCCcCCHHHHHHHHHHHHH--hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCC
Confidence 0 122344333333333333 4678999999999999876555554433 2333335688999999
Q ss_pred hhcc
Q 001077 1148 IKCN 1151 (1162)
Q Consensus 1148 ~~~~ 1151 (1162)
....
T Consensus 188 ~~~~ 191 (204)
T cd03250 188 LQLL 191 (204)
T ss_pred HHHH
Confidence 8543
No 69
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.70 E-value=0.00022 Score=77.61 Aligned_cols=121 Identities=12% Similarity=0.034 Sum_probs=62.8
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCc--ccCCccccCCcceeeeecCCccchh--------------------
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD--VPAEIFEISPVDRIFVRMGAKDHIM-------------------- 1084 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~f--VPA~~a~l~i~DrIfTRIGa~D~i~-------------------- 1084 (1162)
..++.|+|||++||||+||.++-+. -..-|.. +......++.-..+|-.+-..|+|.
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl~-~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~ 91 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGLD-APDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSHFCYQL 91 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc-cCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4689999999999999999998432 1222221 1110000100011121111122221
Q ss_pred -----------hcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcc
Q 001077 1085 -----------AGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1085 -----------~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~ 1151 (1162)
...|..|.-...++..| +.+..++|+||.-.|-+...-..+-..+.+..+ ..+++++||-+...
T Consensus 92 ~~l~~~~~~~~~~lS~G~~qrv~la~al--~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~-~~~ii~vsH~~~~~ 166 (213)
T PRK15177 92 TQLEQCYTDRVSEYSVTMKTHLAFAINL--LLPCRLYIADGKLYTGDNATQLRMQAALACQLQ-QKGLIVLTHNPRLI 166 (213)
T ss_pred hChhHHhhchHhhcCHHHHHHHHHHHHH--hcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-CCcEEEEECCHHHH
Confidence 12233332222333333 567789999997555566555555444443222 34689999998543
No 70
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=97.70 E-value=0.0001 Score=82.13 Aligned_cols=129 Identities=17% Similarity=0.120 Sum_probs=76.5
Q ss_pred cceEEEEccCCCChhHHHHHHHHHH--------------------HHHHcCCcccCCcc---ccCCcce-----------
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEIF---EISPVDR----------- 1072 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv--------------------ILAQiG~fVPA~~a---~l~i~Dr----------- 1072 (1162)
..++.|+|||++||||+||.++=+. +..++ .|||.+.. .+++.+.
T Consensus 22 Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i-~~v~q~~~~~~~~tv~~nl~~~~~~~~~~ 100 (248)
T PRK03695 22 GEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHR-AYLSQQQTPPFAMPVFQYLTLHQPDKTRT 100 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhhe-EEecccCccCCCccHHHHHHhcCccCCCc
Confidence 4689999999999999999987321 01112 25554321 1122221
Q ss_pred ---------eeeecCCcc---chhhcccchHHHHHHHHHHHhc-----CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhh
Q 001077 1073 ---------IFVRMGAKD---HIMAGQSTFLTELSETALMLSS-----ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQ 1135 (1162)
Q Consensus 1073 ---------IfTRIGa~D---~i~~g~STFmvEM~Eta~IL~~-----AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~ 1135 (1162)
++.++|-.+ ......|.-+.-...++..|-. .....|+||||.-.|-+...-..+...+.++.
T Consensus 101 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~ 180 (248)
T PRK03695 101 EAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELC 180 (248)
T ss_pred HHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 111222221 1122234444444445555543 11448999999999999887777777666665
Q ss_pred cccCceEEEehhhh-cccccce
Q 001077 1136 SLAGSQFLSTLFIK-CNAVDCF 1156 (1162)
Q Consensus 1136 ~l~~~~~~~th~~~-~~~~~~~ 1156 (1162)
+...+++++||... +..+.+.
T Consensus 181 ~~~~tvi~~sH~~~~~~~~~d~ 202 (248)
T PRK03695 181 QQGIAVVMSSHDLNHTLRHADR 202 (248)
T ss_pred hCCCEEEEEecCHHHHHHhCCE
Confidence 54568999999985 4444443
No 71
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.69 E-value=8.8e-05 Score=82.15 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=37.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+.+..++||||--.|-+..--..|.-.+.++.+...+++++||....
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~ 206 (243)
T TIGR01978 160 LLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRL 206 (243)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHH
Confidence 46778999999999988877777776666665545789999998754
No 72
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.68 E-value=0.00011 Score=85.70 Aligned_cols=132 Identities=22% Similarity=0.206 Sum_probs=78.9
Q ss_pred cccceecCCCCCcceEEEEccCCCChhHHHHHHHHHH--------------------HHHHcCCcccCCc---cccCCcc
Q 001077 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEI---FEISPVD 1071 (1162)
Q Consensus 1015 VPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLiv--------------------ILAQiG~fVPA~~---a~l~i~D 1071 (1162)
+=+|+.+.-. .+.++.|.|||++||||+||.++=+. +..++| |||-+. ..+++.|
T Consensus 56 ~l~~is~~i~-~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig-~v~q~~~~~~~~tv~e 133 (340)
T PRK13536 56 VVNGLSFTVA-SGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIG-VVPQFDNLDLEFTVRE 133 (340)
T ss_pred EEeeeEEEEc-CCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEE-EEeCCccCCCCCcHHH
Confidence 4455555422 34689999999999999999998432 111222 444321 1222333
Q ss_pred ee---------------------eeecCCc---cchhhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHH
Q 001077 1072 RI---------------------FVRMGAK---DHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1162)
Q Consensus 1072 rI---------------------fTRIGa~---D~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AI 1127 (1162)
.+ +.++|-. +......|.=|.-...+|..| +....|+||||--.|-++.--..|
T Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL--~~~P~lLiLDEPt~gLD~~~r~~l 211 (340)
T PRK13536 134 NLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARAL--INDPQLLILDEPTTGLDPHARHLI 211 (340)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHH--hcCCCEEEEECCCCCCCHHHHHHH
Confidence 22 1111111 111122333333333333333 467799999999999999888888
Q ss_pred HHHHHHhhcccCceEEEehhhhc
Q 001077 1128 AVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1128 A~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
.-.+.++.+...+++++||.+..
T Consensus 212 ~~~l~~l~~~g~tilisSH~l~e 234 (340)
T PRK13536 212 WERLRSLLARGKTILLTTHFMEE 234 (340)
T ss_pred HHHHHHHHhCCCEEEEECCCHHH
Confidence 77777776556789999999854
No 73
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.68 E-value=0.00039 Score=75.68 Aligned_cols=69 Identities=16% Similarity=0.120 Sum_probs=48.5
Q ss_pred hhcccchHHHHHHHHHHHh--cCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccc
Q 001077 1084 MAGQSTFLTELSETALMLS--SATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1084 ~~g~STFmvEM~Eta~IL~--~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~ 1153 (1162)
....|.-|.-...++..+. +..+..++|+||.-.|-++..-..+...+.++.+ ..+++++||...+..+
T Consensus 125 ~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~~~~~~ 195 (212)
T cd03274 125 ISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRNNMFEL 195 (212)
T ss_pred hhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcHHHHHh
Confidence 3445666666666777553 2356689999999999998888777776666543 5678899998654443
No 74
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.68 E-value=8.4e-05 Score=80.68 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=36.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....++||||--.|-+..--.-|.-.+.++.+...+++++||...
T Consensus 153 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 198 (214)
T TIGR02673 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS 198 (214)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 5678999999998888877777666666666555678999999984
No 75
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.68 E-value=9.5e-05 Score=81.15 Aligned_cols=49 Identities=18% Similarity=0.151 Sum_probs=38.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKCNA 1152 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~~~ 1152 (1162)
+.+..|+||||--.|-+...-..+.-.+.++.. ...+++++||......
T Consensus 162 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 211 (228)
T PRK10584 162 NGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA 211 (228)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 467889999999999998777777766666644 4668999999985543
No 76
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.67 E-value=0.00013 Score=80.30 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=39.8
Q ss_pred cCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcc-cCceEEEehhhhc-ccccce
Q 001077 1103 SATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSL-AGSQFLSTLFIKC-NAVDCF 1156 (1162)
Q Consensus 1103 ~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l-~~~~~~~th~~~~-~~~~~~ 1156 (1162)
-+....|+||||--.|-+..--..+.-.+.++.+- ..+++++||.... ..+.+.
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~ 210 (233)
T cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDR 210 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 35678899999999999887777776666666543 5689999998854 334443
No 77
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.66 E-value=0.00012 Score=79.93 Aligned_cols=53 Identities=8% Similarity=-0.076 Sum_probs=40.4
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccceE
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDCFQ 1157 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~~~ 1157 (1162)
+.+..|+||||--.|-+...-..|.-.+.++.+- .+++++||......+.+..
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~d~v 208 (220)
T cd03245 156 LNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSLLDLVDRI 208 (220)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHHHHhCCEE
Confidence 4678899999999999988888887777776543 6899999988554444433
No 78
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.66 E-value=0.00013 Score=81.47 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=36.5
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~ 1150 (1162)
+....++||||--.|-+..--..+.-.+.++.. ...+++++||....
T Consensus 136 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~ 183 (251)
T PRK09544 136 LNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHL 183 (251)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 567889999999999988777766666666544 36689999998854
No 79
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.65 E-value=0.00012 Score=81.62 Aligned_cols=47 Identities=11% Similarity=0.031 Sum_probs=35.6
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....++||||--.|-+..--..|.-.+.++.+...+++++||....
T Consensus 160 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~ 206 (250)
T PRK11264 160 AMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSF 206 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 46788999999998888766666665555565546689999999853
No 80
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.64 E-value=0.00017 Score=80.24 Aligned_cols=53 Identities=11% Similarity=0.039 Sum_probs=41.1
Q ss_pred cCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc-ccccc
Q 001077 1103 SATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC-NAVDC 1155 (1162)
Q Consensus 1103 ~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~-~~~~~ 1155 (1162)
-+....++||||--.|-+..--..++..+.++.+ ...+++++||-... ..+.+
T Consensus 130 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d 184 (246)
T cd03237 130 LSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLAD 184 (246)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 3577899999999999998888888877777654 46789999999854 33444
No 81
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00023 Score=74.15 Aligned_cols=40 Identities=35% Similarity=0.507 Sum_probs=31.7
Q ss_pred cccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCC
Q 001077 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE 1063 (1162)
Q Consensus 1013 ~fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~ 1063 (1162)
.|-+-++.+.. ..++.|||||++||||+||.+| |.-=|.+
T Consensus 17 lf~~L~f~l~~---Ge~~~i~G~NG~GKTtLLRila--------GLl~p~~ 56 (209)
T COG4133 17 LFSDLSFTLNA---GEALQITGPNGAGKTTLLRILA--------GLLRPDA 56 (209)
T ss_pred eecceeEEEcC---CCEEEEECCCCCcHHHHHHHHH--------cccCCCC
Confidence 46666777764 3589999999999999999998 7666654
No 82
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.64 E-value=0.00025 Score=78.15 Aligned_cols=51 Identities=10% Similarity=0.061 Sum_probs=40.6
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~ 1155 (1162)
+....++||||--.|-+...-..+.-.+..+.+ ..+++++||........+
T Consensus 153 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~d 203 (236)
T cd03253 153 LKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVNAD 203 (236)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCC
Confidence 567899999999999998888777777776666 668999999985544433
No 83
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.63 E-value=0.00041 Score=76.85 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHhc--CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhccccc
Q 001077 1090 FLTELSETALMLSS--ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVD 1154 (1162)
Q Consensus 1090 FmvEM~Eta~IL~~--AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~ 1154 (1162)
=+.--..++..|-. ..+..++|+||.-+|.++.--..|...+.++.. ...++++||-..+..+.
T Consensus 162 G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~~~~~~ 227 (243)
T cd03272 162 GQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRPELLEVA 227 (243)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHhhC
Confidence 33333345555532 245689999999999998777766666655543 33445555554443333
No 84
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.63 E-value=9.7e-05 Score=84.84 Aligned_cols=46 Identities=20% Similarity=0.228 Sum_probs=37.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....|+||||--.|-++.--..|.-.+.++.+...+++++||...
T Consensus 151 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~ 196 (303)
T TIGR01288 151 INDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME 196 (303)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 4678999999999999887777777666666555678999999984
No 85
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.62 E-value=0.00026 Score=77.28 Aligned_cols=53 Identities=13% Similarity=-0.023 Sum_probs=39.4
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhh-cccccce
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIK-CNAVDCF 1156 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~-~~~~~~~ 1156 (1162)
+....++||||--.|-++.--..|.-.+.++.. ...+++++||... +..+.+.
T Consensus 147 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~ 201 (220)
T cd03293 147 AVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADR 201 (220)
T ss_pred HcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCE
Confidence 457789999999999888877777776666543 3568999999985 4444443
No 86
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.62 E-value=0.00015 Score=78.60 Aligned_cols=47 Identities=9% Similarity=-0.014 Sum_probs=36.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+.+..|+||||--.|-+...-..+.-.+.++.+...+++++||....
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~ 197 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGF 197 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 46778999999999988776666666666665545689999998853
No 87
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.62 E-value=0.00012 Score=78.99 Aligned_cols=121 Identities=17% Similarity=0.145 Sum_probs=71.1
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHH-----------------H-HHcCCcccCCc----cccCCcceee----------
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVI-----------------L-AQVGADVPAEI----FEISPVDRIF---------- 1074 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivI-----------------L-AQiG~fVPA~~----a~l~i~DrIf---------- 1074 (1162)
..++.|+|||++||||+||.++=+.- . .++ .|||.+. ...++.|.|.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i-~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~ 104 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSI-GYVMQDVDYQLFTDSVREELLLGLKELDAGN 104 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcce-EEEecChhhhhhhccHHHHHhhhhhhcCccH
Confidence 45899999999999999999874320 0 012 2444431 1123333221
Q ss_pred -------eecCCcc---chhhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEE
Q 001077 1075 -------VRMGAKD---HIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLS 1144 (1162)
Q Consensus 1075 -------TRIGa~D---~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~ 1144 (1162)
.++|-.+ ......|.-+.-...++..| +.+..++||||--.|-++.--..|.-.+.++.+...+++++
T Consensus 105 ~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral--~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~ 182 (205)
T cd03226 105 EQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAAL--LSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVI 182 (205)
T ss_pred HHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHH--HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 1111111 11122333333333333333 45778999999999999877777766666665446689999
Q ss_pred ehhhhc
Q 001077 1145 TLFIKC 1150 (1162)
Q Consensus 1145 th~~~~ 1150 (1162)
||....
T Consensus 183 sH~~~~ 188 (205)
T cd03226 183 THDYEF 188 (205)
T ss_pred eCCHHH
Confidence 998853
No 88
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.62 E-value=0.00036 Score=75.70 Aligned_cols=19 Identities=42% Similarity=0.634 Sum_probs=18.5
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
|+|+|||++||||+||.++
T Consensus 60 W~I~G~NGsGKTTLL~ll~ 78 (257)
T COG1119 60 WAIVGPNGAGKTTLLSLLT 78 (257)
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 9999999999999999987
No 89
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.62 E-value=0.00016 Score=78.63 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=39.9
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc-ccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC-NAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~-~~~~~ 1155 (1162)
+....++||||--.|-+..--..|.-.+.++.+...+++++||.... ..+.+
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d 206 (216)
T TIGR00960 154 VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRH 206 (216)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 56788999999999999887777777676665546689999999853 33444
No 90
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=0.00011 Score=80.11 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=36.7
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcc-cCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSL-AGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l-~~~~~~~th~~~ 1149 (1162)
+....|+|+||.-.|-+..--..+.-.+.++..- ..+++++||-..
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~ 193 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME 193 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 5678899999999999988777777666666553 668999999874
No 91
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=0.00029 Score=77.30 Aligned_cols=64 Identities=13% Similarity=0.047 Sum_probs=46.2
Q ss_pred ccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccc
Q 001077 1087 QSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1087 ~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~ 1153 (1162)
.|.-+.-...++..| +....++||||--.|-+...-..|.-.+..+.+ ..+++++||.......
T Consensus 140 LS~G~~~rv~la~al--~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~ 203 (229)
T cd03254 140 LSQGERQLLAIARAM--LRDPKILILDEATSNIDTETEKLIQEALEKLMK-GRTSIIIAHRLSTIKN 203 (229)
T ss_pred CCHHHHHHHHHHHHH--hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHhh
Confidence 444444444455555 577899999999999998887777766666643 5689999999865444
No 92
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.61 E-value=0.00031 Score=77.00 Aligned_cols=53 Identities=8% Similarity=-0.088 Sum_probs=39.5
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh-cccccce
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK-CNAVDCF 1156 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~-~~~~~~~ 1156 (1162)
+.+..++||||--.|-+...-..+.-.+.++.+...+++++||... +..+.+.
T Consensus 158 ~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~ 211 (224)
T cd03220 158 ALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDR 211 (224)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 4678999999999999988777776666666554568999999874 3334443
No 93
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.59 E-value=0.00018 Score=77.44 Aligned_cols=55 Identities=13% Similarity=-0.011 Sum_probs=40.9
Q ss_pred cCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccceE
Q 001077 1103 SATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDCFQ 1157 (1162)
Q Consensus 1103 ~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~~~ 1157 (1162)
-+....++|+||--.|-+...-..+.-.+.++.+-..+++++||....---++|+
T Consensus 142 l~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~ 196 (200)
T PRK13540 142 WMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYE 196 (200)
T ss_pred HhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchh
Confidence 3567789999999999887776666666666655567899999988655445554
No 94
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.59 E-value=0.00019 Score=80.42 Aligned_cols=48 Identities=8% Similarity=-0.045 Sum_probs=38.6
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~ 1151 (1162)
+....++|+||--.|-++..-..+...+-++.+...+++++||-....
T Consensus 155 ~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~ 202 (255)
T cd03236 155 ARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVL 202 (255)
T ss_pred HhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 356689999999999998888888877777765567899999987543
No 95
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.58 E-value=0.00014 Score=78.83 Aligned_cols=52 Identities=13% Similarity=0.025 Sum_probs=39.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh-cccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK-CNAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~-~~~~~~ 1155 (1162)
+.+..++||||--.|-++.--..+.-.+.++.+...+++++||... +..+.+
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d 200 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFD 200 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence 4678899999999998887777777777766554568999999984 333433
No 96
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.58 E-value=0.0007 Score=74.39 Aligned_cols=48 Identities=17% Similarity=0.102 Sum_probs=37.9
Q ss_pred cEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccc
Q 001077 1108 SLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDC 1155 (1162)
Q Consensus 1108 SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~ 1155 (1162)
.++|+||--+|-+...-..|...+.++.+...+++++||......+.+
T Consensus 159 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d 206 (226)
T cd03270 159 VLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAAD 206 (226)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCC
Confidence 699999999999988877777777766656678999999986544433
No 97
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00028 Score=78.19 Aligned_cols=47 Identities=11% Similarity=0.073 Sum_probs=36.4
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+.+..|+||||.-.|-+..--..+...+..+.+...+++++||....
T Consensus 157 ~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 203 (242)
T PRK11124 157 MMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEV 203 (242)
T ss_pred hcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 45788999999999998876666666666665546789999998854
No 98
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00018 Score=80.34 Aligned_cols=48 Identities=15% Similarity=0.195 Sum_probs=37.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcc-cCceEEEehhhhcc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSL-AGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l-~~~~~~~th~~~~~ 1151 (1162)
+....|+||||--.|-++.--..|.-.+..+.+. ..+++++||.....
T Consensus 169 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~ 217 (255)
T PRK11300 169 VTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLV 217 (255)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHH
Confidence 4678999999999998887777766666666543 56899999998543
No 99
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.57 E-value=0.0003 Score=76.74 Aligned_cols=48 Identities=19% Similarity=0.155 Sum_probs=37.4
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhcc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~~ 1151 (1162)
+....++||||--.|-+..--..+.-.+.++.+ ...+++++||.....
T Consensus 157 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~ 205 (221)
T TIGR02211 157 VNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELA 205 (221)
T ss_pred hCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 567889999999999888777777766666643 356899999998543
No 100
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=97.57 E-value=0.00074 Score=73.04 Aligned_cols=55 Identities=11% Similarity=-0.030 Sum_probs=40.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHH-HHHHHHHHhhcc-cCceEEEehhhhcccccceEe
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQ-AIAVFSSGFQSL-AGSQFLSTLFIKCNAVDCFQL 1158 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~-AIA~A~~~~~~l-~~~~~~~th~~~~~~~~~~~~ 1158 (1162)
+....++|+||.-.|-++..-. .+.-.+.++.+. ..+++++||...+....+-.+
T Consensus 137 ~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~ 193 (204)
T cd03240 137 GSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIY 193 (204)
T ss_pred ccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEE
Confidence 5678999999999999887766 676666665543 568999999886555444333
No 101
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.56 E-value=0.0001 Score=79.64 Aligned_cols=47 Identities=19% Similarity=0.093 Sum_probs=37.7
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....++|+||--.|-+...-..+.-.+.++.+...+++++||....
T Consensus 145 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 191 (204)
T PRK13538 145 LTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLP 191 (204)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhh
Confidence 56789999999999988888877777666665556789999998843
No 102
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.56 E-value=0.00026 Score=80.31 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=39.8
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcc-cCceEEEehhhhcccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSL-AGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l-~~~~~~~th~~~~~~~ 1153 (1162)
+....|+||||.-.|-++..-..|.-.+.++.+- ..+++++||.......
T Consensus 156 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~ 206 (279)
T PRK13635 156 ALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ 206 (279)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc
Confidence 4678999999999999988877777767666553 6789999999865543
No 103
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.56 E-value=0.00014 Score=82.37 Aligned_cols=48 Identities=13% Similarity=0.100 Sum_probs=37.9
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~ 1151 (1162)
+....|+||||--.|-+...-..+.-.+..+.+...+++++||.....
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~ 201 (274)
T PRK13647 154 AMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLA 201 (274)
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 467899999999999988877777666666654467899999998643
No 104
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.55 E-value=0.00018 Score=79.56 Aligned_cols=54 Identities=11% Similarity=-0.006 Sum_probs=39.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcc-cCceEEEehhhh-cccccceE
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSL-AGSQFLSTLFIK-CNAVDCFQ 1157 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l-~~~~~~~th~~~-~~~~~~~~ 1157 (1162)
+...+++||||.=.|-+..---.+.-.+.++.+. ..+++++||... +..+.+.-
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i 201 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRI 201 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEE
Confidence 3567999999999998887666666666665543 578999999985 34444443
No 105
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.55 E-value=0.00026 Score=79.70 Aligned_cols=46 Identities=13% Similarity=0.062 Sum_probs=35.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....++||||.-.|-+..--..+...+.++.+...+++++||...
T Consensus 159 ~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~ 204 (264)
T PRK13546 159 TVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG 204 (264)
T ss_pred hhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 4677899999999998876655666666666555678999999874
No 106
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=0.0004 Score=75.35 Aligned_cols=46 Identities=20% Similarity=0.068 Sum_probs=36.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~ 1149 (1162)
+....++||||--.|-++.--..|.-.+.++.+ ...+++++||...
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 192 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE 192 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 467789999999999998777777666666544 3568999999874
No 107
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.55 E-value=0.00045 Score=76.24 Aligned_cols=62 Identities=11% Similarity=0.018 Sum_probs=43.3
Q ss_pred cchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhccc
Q 001077 1088 STFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNA 1152 (1162)
Q Consensus 1088 STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~ 1152 (1162)
|.-+.-...++..| +....++||||--.|-+...-..|.-.+.++.+ ..+++++||......
T Consensus 140 SgG~~qrv~laral--~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~ 201 (237)
T cd03252 140 SGGQRQRIAIARAL--IHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLSTVK 201 (237)
T ss_pred CHHHHHHHHHHHHH--hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHH
Confidence 33333333344444 467789999999999988877777776766654 568999999985543
No 108
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.55 E-value=0.00046 Score=75.97 Aligned_cols=52 Identities=10% Similarity=-0.040 Sum_probs=38.6
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhh-cccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIK-CNAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~-~~~~~~ 1155 (1162)
+....++||||--.|-+..--..|.-.+.++.+ ...+++++||... +..+.+
T Consensus 130 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d 183 (230)
T TIGR01184 130 SIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSD 183 (230)
T ss_pred HcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence 456789999999999988777777766666544 3568999999984 344444
No 109
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.55 E-value=0.0003 Score=77.02 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=37.8
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....++||||--.|-+..--..+.-.+.++.+...+++++||....
T Consensus 140 ~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~ 186 (223)
T TIGR03740 140 LNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSE 186 (223)
T ss_pred hcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 46789999999999998887777777676665545689999999864
No 110
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.55 E-value=0.00018 Score=78.40 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=39.0
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh-cccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK-CNAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~-~~~~~~ 1155 (1162)
+....++||||.-.|-+...-..+.-.+.++.+...+++++||... +..+.+
T Consensus 152 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d 204 (218)
T cd03266 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCD 204 (218)
T ss_pred hcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcC
Confidence 4678899999999999887777776666666555678999999884 333333
No 111
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.55 E-value=0.0002 Score=77.50 Aligned_cols=46 Identities=13% Similarity=0.183 Sum_probs=37.0
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....|+||||--.|-+..--..|.-.+.++.....+++++||...
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~ 195 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD 195 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 4677899999999999888777777777666554568999999874
No 112
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.54 E-value=0.00015 Score=80.39 Aligned_cols=47 Identities=9% Similarity=0.073 Sum_probs=34.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~ 1150 (1162)
+.+..++||||--.|-+..--..|.-.+.++.+ ...+++++||....
T Consensus 161 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~ 208 (243)
T TIGR02315 161 AQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDL 208 (243)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 467889999999888877655555555555533 35678999998854
No 113
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.54 E-value=0.0005 Score=74.39 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=36.7
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....|+|+||--.|-++.--..|.-.+.++.+...+++++||...
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 188 (207)
T PRK13539 143 VSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL 188 (207)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 4567899999999999888777776666666555678999999874
No 114
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.54 E-value=0.00021 Score=78.28 Aligned_cols=58 Identities=10% Similarity=0.039 Sum_probs=43.6
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcc-cccceEeeec
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCN-AVDCFQLTIT 1161 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~-~~~~~~~~~~ 1161 (1162)
+....|+||||--.|-++..-..+.-.+.++.+...+++++||..... .+.+.-+.+|
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 165 IADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 356789999999999988877777777776655566899999998654 4566555554
No 115
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.54 E-value=0.00029 Score=79.85 Aligned_cols=53 Identities=17% Similarity=0.190 Sum_probs=38.5
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcc-cCceEEEehhhhcc-cccce
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSL-AGSQFLSTLFIKCN-AVDCF 1156 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l-~~~~~~~th~~~~~-~~~~~ 1156 (1162)
+....++||||-=.|-+..--..+...+.++... ..+++++||..... .+.+-
T Consensus 153 ~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~dr 207 (277)
T PRK13652 153 AMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADY 207 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 4577899999999998877666666666665543 67899999998543 34443
No 116
>PRK10908 cell division protein FtsE; Provisional
Probab=97.54 E-value=0.00019 Score=78.41 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=37.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
++...|+||||--.|-+..--..+...+.++.+...+++++||....
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 199 (222)
T PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGL 199 (222)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 45778999999999998877677777676665556789999998843
No 117
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.53 E-value=0.00033 Score=79.29 Aligned_cols=45 Identities=9% Similarity=0.140 Sum_probs=36.6
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....|+||||--.|-+..--..+...+.++.+ ..+++++||...
T Consensus 177 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~ 221 (274)
T PRK14265 177 AMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ 221 (274)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 467899999999999988777777777776654 468999999884
No 118
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.53 E-value=0.00058 Score=74.00 Aligned_cols=54 Identities=7% Similarity=-0.009 Sum_probs=39.8
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhh-cccccceE
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIK-CNAVDCFQ 1157 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~-~~~~~~~~ 1157 (1162)
+....++||||--.|-++..-..+.-.+.++.+ ...+++++||... +..+.+.-
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i 199 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRV 199 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEE
Confidence 467899999999999888877777666666543 3568999999885 33444433
No 119
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.52 E-value=0.00053 Score=75.52 Aligned_cols=52 Identities=10% Similarity=0.039 Sum_probs=38.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc-ccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC-NAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~-~~~~~ 1155 (1162)
+....++||||--.|-+..--..+.-.+.++.+ ...+++++||.... ..+.+
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d 198 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAP 198 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 567899999999999887776666666666543 35689999999863 34444
No 120
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=0.00025 Score=78.17 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=35.8
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~ 1149 (1162)
+....++||||--.|-+..--..|.-.+.++.+ ...+++++||...
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~ 198 (235)
T cd03261 152 ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD 198 (235)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 567889999999999888766666666666554 3568999999885
No 121
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.52 E-value=0.00021 Score=78.10 Aligned_cols=56 Identities=14% Similarity=0.100 Sum_probs=42.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhcccccceEee
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKCNAVDCFQLT 1159 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~~~~~~~~~~ 1159 (1162)
++...++|+||--.|-+..--..|--.+.++.+ ...+++++||...+..+.+..+.
T Consensus 157 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~ 213 (220)
T TIGR02982 157 VHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVH 213 (220)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEE
Confidence 567899999999999998777666666665544 46889999999976555554443
No 122
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.52 E-value=0.00021 Score=78.31 Aligned_cols=49 Identities=10% Similarity=0.018 Sum_probs=36.5
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKCNA 1152 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~~~ 1152 (1162)
+....++||||--.|-+..--..+.-.+.++.+ ...+++++||......
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~ 202 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN 202 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH
Confidence 467899999999998887666666666666544 3568999999885433
No 123
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.51 E-value=0.00032 Score=80.45 Aligned_cols=137 Identities=16% Similarity=0.200 Sum_probs=79.9
Q ss_pred cccceecCCCCCcceEEEEccCCCChhHHHHHHHHHH--------------------HHHHcCCcccCCcc---ccCCcc
Q 001077 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEIF---EISPVD 1071 (1162)
Q Consensus 1015 VPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLiv--------------------ILAQiG~fVPA~~a---~l~i~D 1071 (1162)
+-+|+.+.-. .+.++.|.|||++||||+||.++=+. +..++| |||.... .+++.|
T Consensus 17 ~l~~is~~i~-~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig-~~~q~~~l~~~~tv~e 94 (301)
T TIGR03522 17 ALDEVSFEAQ-KGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIG-YLPEHNPLYLDMYVRE 94 (301)
T ss_pred EEEEeEEEEe-CCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceE-EecCCCCCCCCCcHHH
Confidence 3444444321 34689999999999999999988431 112232 4444321 122222
Q ss_pred ee---------------------eeecCCc---cchhhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHH
Q 001077 1072 RI---------------------FVRMGAK---DHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1162)
Q Consensus 1072 rI---------------------fTRIGa~---D~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AI 1127 (1162)
.+ ..++|-. +......|.-|.-...++..| +....|+||||--.|-++.--.-+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al--~~~p~lliLDEPt~gLD~~~~~~l 172 (301)
T TIGR03522 95 YLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQAL--IHDPKVLILDEPTTGLDPNQLVEI 172 (301)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHH--hcCCCEEEEcCCcccCCHHHHHHH
Confidence 22 1112211 122223344444444444444 567789999999999988766666
Q ss_pred HHHHHHhhcccCceEEEehhhh-cccccce
Q 001077 1128 AVFSSGFQSLAGSQFLSTLFIK-CNAVDCF 1156 (1162)
Q Consensus 1128 A~A~~~~~~l~~~~~~~th~~~-~~~~~~~ 1156 (1162)
-..+.++.+ ..+++++||... +..+.+.
T Consensus 173 ~~~l~~~~~-~~tiii~sH~l~~~~~~~d~ 201 (301)
T TIGR03522 173 RNVIKNIGK-DKTIILSTHIMQEVEAICDR 201 (301)
T ss_pred HHHHHHhcC-CCEEEEEcCCHHHHHHhCCE
Confidence 666666654 578999999995 4444443
No 124
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.51 E-value=0.00025 Score=80.40 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=39.9
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc-ccccce
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC-NAVDCF 1156 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~-~~~~~~ 1156 (1162)
+...+|+||||.-.|-++..-..+.-.+.++.+...+++++||.... ..+.+.
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~ 214 (280)
T PRK13649 161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADF 214 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCE
Confidence 46789999999999999877777776666665546789999999853 344443
No 125
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.51 E-value=0.00019 Score=81.07 Aligned_cols=52 Identities=10% Similarity=-0.059 Sum_probs=38.6
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcc-cCceEEEehhhhc-ccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSL-AGSQFLSTLFIKC-NAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l-~~~~~~~th~~~~-~~~~~ 1155 (1162)
+....++||||--.|-++.--..|.-.+.++.+. ..+++++||.... ..+.+
T Consensus 176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d 229 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGD 229 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence 4678999999999999887777776666666443 5689999999853 33433
No 126
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.51 E-value=0.00027 Score=81.32 Aligned_cols=132 Identities=20% Similarity=0.189 Sum_probs=80.3
Q ss_pred cccceecCCCCCcceEEEEccCCCChhHHHHHHHHHH--------------------HHHHcCCcccCCcc---ccCCcc
Q 001077 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEIF---EISPVD 1071 (1162)
Q Consensus 1015 VPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLiv--------------------ILAQiG~fVPA~~a---~l~i~D 1071 (1162)
+-+|+.+.-. ...++.|.|||++||||+||.++=+. +-.++| |||-+.. .+++.+
T Consensus 22 ~l~~vsl~i~-~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig-~v~q~~~~~~~~tv~e 99 (306)
T PRK13537 22 VVDGLSFHVQ-RGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVG-VVPQFDNLDPDFTVRE 99 (306)
T ss_pred EEecceEEEe-CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEE-EEeccCcCCCCCcHHH
Confidence 4455655432 34689999999999999999997432 112333 4554321 223333
Q ss_pred eee--ee-------------------cCCc---cchhhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHH
Q 001077 1072 RIF--VR-------------------MGAK---DHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1162)
Q Consensus 1072 rIf--TR-------------------IGa~---D~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AI 1127 (1162)
.+. .+ +|-. +......|.=|.--..+|..| +....|+||||--.|-++.--..+
T Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL--~~~P~lllLDEPt~gLD~~~~~~l 177 (306)
T PRK13537 100 NLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARAL--VNDPDVLVLDEPTTGLDPQARHLM 177 (306)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHH--hCCCCEEEEeCCCcCCCHHHHHHH
Confidence 221 11 1111 112223333333333344444 467789999999999999888877
Q ss_pred HHHHHHhhcccCceEEEehhhhc
Q 001077 1128 AVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1128 A~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
--.+.++.+...+++++||.+..
T Consensus 178 ~~~l~~l~~~g~till~sH~l~e 200 (306)
T PRK13537 178 WERLRSLLARGKTILLTTHFMEE 200 (306)
T ss_pred HHHHHHHHhCCCEEEEECCCHHH
Confidence 77777776556789999999964
No 127
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.51 E-value=0.00034 Score=75.48 Aligned_cols=120 Identities=19% Similarity=0.166 Sum_probs=67.6
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCccc--CCccccCCc---------------------ceeeeecCCccch
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVP--AEIFEISPV---------------------DRIFVRMGAKDHI 1083 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVP--A~~a~l~i~---------------------DrIfTRIGa~D~i 1083 (1162)
..++.|.|||++||||+||.++ |..-| +.+.++-+. +.+|-.+.-.|+|
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~--------G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l 104 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALA--------NRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETL 104 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhc--------ccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHH
Confidence 4689999999999999999988 43331 111111100 0011111111222
Q ss_pred -----------hhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcc-cCceEEEehhh--h
Q 001077 1084 -----------MAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSL-AGSQFLSTLFI--K 1149 (1162)
Q Consensus 1084 -----------~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l-~~~~~~~th~~--~ 1149 (1162)
....|.-+.-...++..| +....|+||||--.|-++.--..+.-.+.++... ..+++++||+. .
T Consensus 105 ~~~~~~~~~~~~~~LS~Ge~qrl~laral--~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~ 182 (202)
T cd03233 105 DFALRCKGNEFVRGISGGERKRVSIAEAL--VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDE 182 (202)
T ss_pred hhhhhhccccchhhCCHHHHHHHHHHHHH--hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHH
Confidence 222343333333333333 4567899999999999887777777766666543 44566666653 4
Q ss_pred cccccce
Q 001077 1150 CNAVDCF 1156 (1162)
Q Consensus 1150 ~~~~~~~ 1156 (1162)
+..+.+.
T Consensus 183 ~~~~~d~ 189 (202)
T cd03233 183 IYDLFDK 189 (202)
T ss_pred HHHhCCe
Confidence 4444443
No 128
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.50 E-value=0.0002 Score=77.83 Aligned_cols=53 Identities=13% Similarity=0.099 Sum_probs=40.0
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc-ccccce
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC-NAVDCF 1156 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~-~~~~~~ 1156 (1162)
+.+..++||||.-.|-+..--..+.-.+.++.+ ...+++++||.... ..+.+.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~ 198 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQ 198 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCe
Confidence 467889999999999988877777776766654 36789999999864 334443
No 129
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=0.00035 Score=79.41 Aligned_cols=52 Identities=13% Similarity=0.037 Sum_probs=40.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhcccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKCNAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~~~~~~ 1155 (1162)
+....|+||||.-.|-+..--..+.-.+..+.. ...+++++||........+
T Consensus 159 ~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d 211 (282)
T PRK13640 159 AVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMAD 211 (282)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCC
Confidence 467899999999999998887777776666544 3678999999986654433
No 130
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.50 E-value=0.0031 Score=77.30 Aligned_cols=114 Identities=23% Similarity=0.265 Sum_probs=73.8
Q ss_pred eEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchH-----HHHHH-------
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFL-----TELSE------- 1096 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFm-----vEM~E------- 1096 (1162)
-+.|+|||++||||+||.++=. +=...|...-.....++.||+-..-+....++..-.+... .++..
T Consensus 350 riaiiG~NG~GKSTLlk~l~g~-~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F 428 (530)
T COG0488 350 RIAIVGPNGAGKSTLLKLLAGE-LGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGF 428 (530)
T ss_pred EEEEECCCCCCHHHHHHHHhhh-cccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCC
Confidence 4889999999999999987311 0111576666777888888887755443333333332222 11111
Q ss_pred ---------------------HHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhh
Q 001077 1097 ---------------------TALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFI 1148 (1162)
Q Consensus 1097 ---------------------ta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~ 1148 (1162)
+|.++ ..+.-|.||||- |+.-|=.+|-.-...+.....++++.+|=-
T Consensus 429 ~~~~~~~~v~~LSGGEk~Rl~La~ll--~~~pNvLiLDEP---TNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr 496 (530)
T COG0488 429 TGEDQEKPVGVLSGGEKARLLLAKLL--LQPPNLLLLDEP---TNHLDIESLEALEEALLDFEGTVLLVSHDR 496 (530)
T ss_pred ChHHHhCchhhcCHhHHHHHHHHHHh--ccCCCEEEEcCC---CccCCHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 22222 357779999995 777787777654444778999999999944
No 131
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.50 E-value=0.00027 Score=78.28 Aligned_cols=52 Identities=15% Similarity=0.080 Sum_probs=37.9
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhh-hcccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFI-KCNAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~-~~~~~~~ 1155 (1162)
+.+..++||||--.|-+...-.-+...+..+.+...+++++||.. .+..+.+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d 205 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCE 205 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcC
Confidence 567899999999999887766655555555555566899999998 3544443
No 132
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.50 E-value=0.0006 Score=75.11 Aligned_cols=49 Identities=10% Similarity=0.118 Sum_probs=38.9
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~ 1153 (1162)
+....++||||--.|-+...-..|.-.+.++.+ ..+++++||.......
T Consensus 154 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~ 202 (234)
T cd03251 154 LKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLSTIEN 202 (234)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHhh
Confidence 567889999999999998888888777766654 6689999998855443
No 133
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.50 E-value=0.00028 Score=77.88 Aligned_cols=52 Identities=21% Similarity=0.188 Sum_probs=39.9
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhcccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKCNAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~~~~~~ 1155 (1162)
+....++||||--.|-++.--..+.-.+.++.+ ...+++++||........+
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d 200 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADD 200 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCC
Confidence 467899999999999998888877777766653 4568999999885543333
No 134
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.50 E-value=0.00026 Score=78.34 Aligned_cols=48 Identities=8% Similarity=0.051 Sum_probs=35.9
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhcc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~~ 1151 (1162)
+....++||||--.|-++.--..|.-.+.++.+ ...+++++||.....
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~ 208 (241)
T cd03256 160 MQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLA 208 (241)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 467889999999999887766666655555543 356899999998543
No 135
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.50 E-value=0.00048 Score=75.11 Aligned_cols=47 Identities=21% Similarity=0.154 Sum_probs=36.5
Q ss_pred cCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1103 SATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1103 ~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
-+.+..++||||--.|-++.--..+.-.+.++.+ ..+++++||....
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~ 194 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDE 194 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHH
Confidence 3578899999999999988777766666666554 3688999998854
No 136
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.49 E-value=0.00024 Score=80.19 Aligned_cols=50 Identities=10% Similarity=0.057 Sum_probs=35.9
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcc-cCceEEEehhhhcccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSL-AGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l-~~~~~~~th~~~~~~~ 1153 (1162)
+....|+||||--.|-+...-..+.-.+.++... ..+++++||......+
T Consensus 158 ~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 208 (271)
T PRK13632 158 ALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAIL 208 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhh
Confidence 5678999999999988876655555555555443 3688999999855433
No 137
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.49 E-value=0.00028 Score=78.08 Aligned_cols=48 Identities=13% Similarity=0.078 Sum_probs=38.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~ 1151 (1162)
+....++||||.-.|-+..--..|.-.+.++.+-..+++++||.....
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 199 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFA 199 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 467789999999999998877777776666655467899999998543
No 138
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.48 E-value=0.00023 Score=78.52 Aligned_cols=47 Identities=19% Similarity=0.233 Sum_probs=35.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+.+..++||||--.|-+..--..+.-.+.++.+...+++++||....
T Consensus 159 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~ 205 (236)
T cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDV 205 (236)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 45778999999988888766666666565565445689999998743
No 139
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.0001 Score=86.64 Aligned_cols=110 Identities=31% Similarity=0.322 Sum_probs=77.1
Q ss_pred eEEEEccCCCChhHHHHHHHHHHHHHHc----------CCcccCCc----cccCCcceeeee---------cCCccchhh
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVILAQV----------GADVPAEI----FEISPVDRIFVR---------MGAKDHIMA 1085 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQi----------G~fVPA~~----a~l~i~DrIfTR---------IGa~D~i~~ 1085 (1162)
=-.|+|||+.|||||||.++- +|+ ||||||.. +.+...|-|.-- .-..++++.
T Consensus 108 RYGLvGrNG~GKsTLLRaia~----~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~ 183 (582)
T KOG0062|consen 108 RYGLVGRNGIGKSTLLRAIAN----GQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILA 183 (582)
T ss_pred ccceeCCCCCcHHHHHHHHHh----cCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHH
Confidence 367999999999999999996 444 88888853 333344433322 112233555
Q ss_pred cccchHHHHHH-----------HHHHHhcC--CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEeh
Q 001077 1086 GQSTFLTELSE-----------TALMLSSA--TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTL 1146 (1162)
Q Consensus 1086 g~STFmvEM~E-----------ta~IL~~A--T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th 1146 (1162)
|.+ |..||.+ |.-.|..| -...|.|||| =|+..|=.||||--.-++....++++..|
T Consensus 184 glG-Ft~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDE---PTNhLDv~av~WLe~yL~t~~~T~liVSH 253 (582)
T KOG0062|consen 184 GLG-FTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDE---PTNHLDVVAVAWLENYLQTWKITSLIVSH 253 (582)
T ss_pred hCC-CCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecC---CcccchhHHHHHHHHHHhhCCceEEEEec
Confidence 664 8888877 33334433 4667999999 59999999999955557778888888888
No 140
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.47 E-value=0.00027 Score=80.03 Aligned_cols=52 Identities=10% Similarity=-0.006 Sum_probs=39.5
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~ 1155 (1162)
+....|+||||--.|-++.--..|.-.+.++.....+++++||........+
T Consensus 152 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d 203 (274)
T PRK13644 152 TMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDAD 203 (274)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCC
Confidence 5678999999999999887666666666666555678999999986544433
No 141
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.47 E-value=0.00018 Score=79.46 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=39.7
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhh-cccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIK-CNAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~-~~~~~~ 1155 (1162)
+....++||||--.|-++.--..|.-.+.++.+ ...+++++||... +..+.+
T Consensus 169 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d 222 (236)
T cd03267 169 LHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALAR 222 (236)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCC
Confidence 456789999999999998888777777777654 3568999999985 344444
No 142
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.46 E-value=0.00033 Score=75.50 Aligned_cols=45 Identities=20% Similarity=0.121 Sum_probs=35.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFI 1148 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~ 1148 (1162)
+....++||||.-.|=+...-..|.-.+.++.+-..+++++||..
T Consensus 141 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~ 185 (201)
T cd03231 141 LSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD 185 (201)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 467789999999999998777777666666555466899999954
No 143
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.45 E-value=0.00031 Score=78.91 Aligned_cols=53 Identities=4% Similarity=-0.097 Sum_probs=39.6
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc-ccccce
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC-NAVDCF 1156 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~-~~~~~~ 1156 (1162)
+....|+||||--.|-+...-..+.-.+.++.+ ...+++++||.... ..+.+.
T Consensus 168 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~ 222 (262)
T PRK09984 168 MQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCER 222 (262)
T ss_pred hcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 456789999999999988877777777766654 35789999999863 444443
No 144
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.45 E-value=0.00049 Score=74.63 Aligned_cols=46 Identities=11% Similarity=-0.009 Sum_probs=35.9
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~ 1149 (1162)
+....++||||--.|-++..=..+.-.+.++.+ ...+++++||...
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~ 192 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV 192 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 456789999999999988777777666666554 3678999999874
No 145
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.45 E-value=0.00064 Score=76.13 Aligned_cols=46 Identities=17% Similarity=0.095 Sum_probs=35.4
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhh-cccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQ-SLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~-~l~~~~~~~th~~~ 1149 (1162)
+....|+||||--.|-++.--..+.-.+.++. +...+++++||...
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~ 190 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE 190 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 46788999999999988877777766666553 33568999999874
No 146
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.45 E-value=0.00026 Score=80.70 Aligned_cols=121 Identities=21% Similarity=0.142 Sum_probs=74.9
Q ss_pred cceEEEEccCCCChhHHHHHHHHHH-----------------------HHHHcCCcccCCc----cccCCccee------
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAV-----------------------ILAQVGADVPAEI----FEISPVDRI------ 1073 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv-----------------------ILAQiG~fVPA~~----a~l~i~DrI------ 1073 (1162)
+.++.|.|||++||||+||.++=+. +..++ .|||-.. ...++.|.|
T Consensus 33 Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~i-g~v~q~~~~~~~~~tv~e~l~~~~~~ 111 (287)
T PRK13637 33 GEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKV-GLVFQYPEYQLFEETIEKDIAFGPIN 111 (287)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhce-EEEecCchhccccccHHHHHHhHHHH
Confidence 4689999999999999999998331 11223 3666542 122333332
Q ss_pred ---------------eeecCCc-----cchhhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHH
Q 001077 1074 ---------------FVRMGAK-----DHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSG 1133 (1162)
Q Consensus 1074 ---------------fTRIGa~-----D~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~ 1133 (1162)
+.++|-. |.-....|.-+.-...+|..| +....++||||.-.|-+..--..+.-.+.+
T Consensus 112 ~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL--~~~P~llllDEPt~gLD~~~~~~l~~~l~~ 189 (287)
T PRK13637 112 LGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVV--AMEPKILILDEPTAGLDPKGRDEILNKIKE 189 (287)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHH--HcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 2222221 111222344444444444444 567799999999999988777766666666
Q ss_pred hhc-ccCceEEEehhhhc
Q 001077 1134 FQS-LAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1134 ~~~-l~~~~~~~th~~~~ 1150 (1162)
+.+ ...+++++||....
T Consensus 190 l~~~~g~tvi~vtHd~~~ 207 (287)
T PRK13637 190 LHKEYNMTIILVSHSMED 207 (287)
T ss_pred HHHhcCCEEEEEeCCHHH
Confidence 654 36789999999854
No 147
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.45 E-value=0.00078 Score=75.53 Aligned_cols=55 Identities=9% Similarity=0.048 Sum_probs=40.5
Q ss_pred HHHHHHhcC----CCCcEEEEcCCCCCCChhhHHHHHHHHHHhh-cccCceEEEehhhhc
Q 001077 1096 ETALMLSSA----TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQ-SLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1096 Eta~IL~~A----T~~SLVIlDELGRGTst~DG~AIA~A~~~~~-~l~~~~~~~th~~~~ 1150 (1162)
.++..|-.+ ....++||||--.|-++.--..|.-.+.++. +...+++++||....
T Consensus 144 ~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 203 (258)
T PRK13548 144 QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNL 203 (258)
T ss_pred HHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 355555432 3678999999999998877777777676665 455689999998854
No 148
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.44 E-value=0.0003 Score=78.50 Aligned_cols=47 Identities=15% Similarity=0.076 Sum_probs=35.7
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~ 1150 (1162)
+....++||||--.|-+...-..+.-.+.++.+ ...+++++||....
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~ 209 (252)
T TIGR03005 162 AMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGF 209 (252)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 457789999999999887766666666665544 36789999999854
No 149
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.44 E-value=0.00036 Score=76.79 Aligned_cols=52 Identities=15% Similarity=0.099 Sum_probs=38.5
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhh-hcccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFI-KCNAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~-~~~~~~~ 1155 (1162)
+....++||||--.|-++.--..+...+.++.+...+++++||.. .+..+.+
T Consensus 149 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d 201 (232)
T cd03218 149 ATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITD 201 (232)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 467899999999999988776666666666655456889999987 3444444
No 150
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.44 E-value=0.00026 Score=79.42 Aligned_cols=53 Identities=15% Similarity=0.003 Sum_probs=37.6
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc-ccccce
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC-NAVDCF 1156 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~-~~~~~~ 1156 (1162)
+....++||||--.|-++..-..|.-.+.++.. ...+++++||.... ..+.+.
T Consensus 149 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~ 203 (257)
T PRK11247 149 IHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADR 203 (257)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 467799999999988887766666665555533 35689999999853 344443
No 151
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=0.00039 Score=79.09 Aligned_cols=48 Identities=21% Similarity=0.154 Sum_probs=36.7
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhcc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~~ 1151 (1162)
+....|+||||.-.|=+...-..+...+.++.. ...+++++||.....
T Consensus 157 ~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~ 205 (283)
T PRK13636 157 VMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIV 205 (283)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 467789999999999887776666665665544 367899999998654
No 152
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.43 E-value=0.00027 Score=77.79 Aligned_cols=46 Identities=9% Similarity=0.083 Sum_probs=36.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~ 1149 (1162)
+....++||||--+|-++..-..+.-.+.++.+ ...+++++||...
T Consensus 141 ~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 187 (230)
T TIGR02770 141 LLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG 187 (230)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 466789999999999998777777666666654 3568999999884
No 153
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.43 E-value=0.00048 Score=76.24 Aligned_cols=46 Identities=13% Similarity=0.084 Sum_probs=36.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~ 1149 (1162)
+....++||||--.|-+...-..|.-.+.++.+ ...+++++||...
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~ 198 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE 198 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 467789999999999988777777666666654 3568999999985
No 154
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=0.0003 Score=80.18 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=39.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh-cccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK-CNAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~-~~~~~~ 1155 (1162)
+....|+||||--.|-++.--..+.-.+.++.+...+++++||... +..+.+
T Consensus 161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d 213 (287)
T PRK13641 161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYAD 213 (287)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 4678999999999999987777666666666555678999999985 344444
No 155
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.42 E-value=0.00039 Score=77.00 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=36.7
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....++||||--.|-++.--..|...+.++.+ ..+++++||....
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~ 204 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEF 204 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHH
Confidence 467789999999999988777777776666655 5689999999853
No 156
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.42 E-value=0.0004 Score=77.83 Aligned_cols=46 Identities=11% Similarity=0.114 Sum_probs=37.0
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+...+++||||--.|-++.--..|.-.+.++.+ ..+++++||....
T Consensus 170 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~ 215 (258)
T PRK14268 170 AVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQ 215 (258)
T ss_pred HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHH
Confidence 467899999999999988888777776766654 5688999999843
No 157
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.42 E-value=0.00023 Score=78.16 Aligned_cols=46 Identities=22% Similarity=0.249 Sum_probs=35.5
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcc-cCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSL-AGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l-~~~~~~~th~~~ 1149 (1162)
+....++||||--.|-+..--..+.-.+.++.+. ..+++++||...
T Consensus 147 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 193 (230)
T TIGR03410 147 VTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD 193 (230)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH
Confidence 4678999999998888877776666666665543 568899999884
No 158
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.41 E-value=0.00042 Score=78.99 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=36.5
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....++||||--.|-++.--..|.-.+..+.+...+++++||....
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~ 206 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDD 206 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 45778999999999998877666666555565546789999999853
No 159
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.41 E-value=0.00068 Score=76.46 Aligned_cols=47 Identities=15% Similarity=0.127 Sum_probs=36.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~ 1150 (1162)
+.+..++||||--.|-+...-..+.-.+.++.+ ...+++++||....
T Consensus 167 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~ 214 (268)
T PRK10419 167 AVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRL 214 (268)
T ss_pred hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHH
Confidence 467889999999999988766666666666654 36789999999854
No 160
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.41 E-value=0.00034 Score=78.93 Aligned_cols=50 Identities=16% Similarity=0.024 Sum_probs=39.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhcccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~~~~ 1153 (1162)
+....|+||||.-.|-+...-..|.-.+.++.+ ...+++++||.......
T Consensus 158 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~ 208 (269)
T PRK13648 158 ALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME 208 (269)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc
Confidence 457789999999999998888888777766654 35689999999865443
No 161
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.40 E-value=0.0004 Score=84.08 Aligned_cols=46 Identities=11% Similarity=0.061 Sum_probs=36.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....++||||--.|-+..--..+...+.++.+...+++++||...
T Consensus 159 ~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~ 204 (549)
T PRK13545 159 HINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS 204 (549)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4677899999999998877666666666666555678999999874
No 162
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00052 Score=76.64 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=36.4
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....|+||||--.|-+..--..+.-.+..+.+ ..+++++||....
T Consensus 165 ~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~ 210 (253)
T PRK14261 165 AVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQ 210 (253)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHH
Confidence 467899999999999988877777666666654 4689999999843
No 163
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.40 E-value=0.00047 Score=76.77 Aligned_cols=61 Identities=13% Similarity=0.110 Sum_probs=43.1
Q ss_pred HHHHHHHHHhc--CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccc
Q 001077 1093 ELSETALMLSS--ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1093 EM~Eta~IL~~--AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~ 1153 (1162)
-+..++.+|-. +.+..++|+||.-.|-+...-..+.-.+.++.....+++++||....-.+
T Consensus 162 ~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~ 224 (247)
T cd03275 162 TMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSK 224 (247)
T ss_pred HHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhh
Confidence 33344444432 23568999999999999988888877777665556689999998754433
No 164
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.39 E-value=0.00024 Score=78.49 Aligned_cols=53 Identities=17% Similarity=0.040 Sum_probs=38.4
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh-cccccce
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK-CNAVDCF 1156 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~-~~~~~~~ 1156 (1162)
+....++||||--.|-+..--..+.-.+.++.+...+++++||... +..+.+.
T Consensus 153 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~ 206 (237)
T PRK11614 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADR 206 (237)
T ss_pred HhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCE
Confidence 4678999999999999876655565555556555678999999874 4444443
No 165
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.39 E-value=0.00063 Score=78.25 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=36.6
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....|+||||--.|-+..--..|...+.++.+ ..+++++||....
T Consensus 216 ~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~ 261 (305)
T PRK14264 216 AVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQ 261 (305)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHH
Confidence 467899999999999998777777666666655 3679999998854
No 166
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=0.00032 Score=76.06 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=35.7
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....++|+||--.|-+...-.-+.-.+.++.+ ..+++++||....
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~ 191 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVED 191 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHH
Confidence 567899999999999887776666665666654 4789999998753
No 167
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.39 E-value=0.0007 Score=74.20 Aligned_cols=49 Identities=8% Similarity=0.075 Sum_probs=38.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~ 1153 (1162)
+....++||||--.|-++..-..|.-.+.++.+ ..+++++||.......
T Consensus 166 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~ 214 (226)
T cd03248 166 IRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTVER 214 (226)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHh
Confidence 567899999999999988887777766666654 4689999999865433
No 168
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.39 E-value=0.00088 Score=74.91 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=36.7
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....|+||||--.|-+..--..+.-.+.++.....+++++||...
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~ 199 (255)
T PRK11231 154 AQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN 199 (255)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 5678999999999999887766777666666544568999999985
No 169
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.39 E-value=0.00056 Score=73.92 Aligned_cols=121 Identities=16% Similarity=0.058 Sum_probs=69.3
Q ss_pred cceEEEEccCCCChhHHHHHHHHHH---------------------HHHHcCCcccCCcc--ccCCccee--eeecCC--
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAV---------------------ILAQVGADVPAEIF--EISPVDRI--FVRMGA-- 1079 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv---------------------ILAQiG~fVPA~~a--~l~i~DrI--fTRIGa-- 1079 (1162)
..++.|+|||++||||+||.++=+. +-.++| |||-+.. ..++.+.| +.....
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~-~v~q~~~~~~~tv~~~l~~~~~~~~~~ 112 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLT-IIPQDPTLFSGTIRSNLDPFDEYSDEE 112 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEE-EEecCCcccCccHHHHhcccCCCCHHH
Confidence 4689999999999999999987331 001122 3333211 01222222 000000
Q ss_pred ------ccchhhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcc
Q 001077 1080 ------KDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1080 ------~D~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~ 1151 (1162)
-+.-....|.-+.-...++..| ++...++||||.-.|-+...-..+.-.+.++.+ ..+++++||...+.
T Consensus 113 ~~~~l~~~~~~~~LS~G~~qrv~laral--~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~th~~~~~ 187 (207)
T cd03369 113 IYGALRVSEGGLNLSQGQRQLLCLARAL--LKRPRVLVLDEATASIDYATDALIQKTIREEFT-NSTILTIAHRLRTI 187 (207)
T ss_pred HHHHhhccCCCCcCCHHHHHHHHHHHHH--hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHH
Confidence 0111123444444444444444 578899999999988888776666555555533 56789999998654
No 170
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.38 E-value=0.00044 Score=78.79 Aligned_cols=46 Identities=13% Similarity=0.139 Sum_probs=35.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....|+||||--.|-+..--..+.-.+.++.. ..+++++||....
T Consensus 198 ~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~ 243 (286)
T PRK14275 198 AVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQ 243 (286)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHH
Confidence 467789999999999988776666666665544 4579999998743
No 171
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.38 E-value=0.00041 Score=76.49 Aligned_cols=47 Identities=13% Similarity=0.120 Sum_probs=35.4
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~ 1150 (1162)
+....++||||--.|-++.--..+.-.+.++.+ ...+++++||....
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~ 208 (233)
T PRK11629 161 VNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL 208 (233)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 467899999999999887666666555555543 35689999999854
No 172
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.38 E-value=0.00039 Score=82.02 Aligned_cols=52 Identities=13% Similarity=0.026 Sum_probs=38.5
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhh-cccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIK-CNAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~-~~~~~~ 1155 (1162)
+....|+||||--.|-+..--..+...+.++.. ...+++++||... +..+.+
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d 202 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLAD 202 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCC
Confidence 567899999999998887777777666666544 4678999999984 333444
No 173
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.38 E-value=0.00021 Score=80.49 Aligned_cols=47 Identities=11% Similarity=0.034 Sum_probs=36.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~ 1150 (1162)
+....++||||.-.|-+..--..+...+.++.+ ...+++++||....
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~ 210 (265)
T PRK10575 163 AQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINM 210 (265)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 467899999999999887766666666666644 36789999999853
No 174
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.38 E-value=0.00058 Score=76.06 Aligned_cols=52 Identities=15% Similarity=0.128 Sum_probs=38.7
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh-cccccce
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK-CNAVDCF 1156 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~-~~~~~~~ 1156 (1162)
+.+..++||||.-.|-+..--..+.-.+.++.+ ..+++++||... +..+.+.
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~~~d~ 214 (250)
T PRK14262 162 AVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIRIADY 214 (250)
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhCCE
Confidence 457789999999999888777777666666654 468899999885 4444443
No 175
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.37 E-value=0.0003 Score=76.80 Aligned_cols=46 Identities=17% Similarity=0.141 Sum_probs=36.8
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+.+.+++||||--.|-+..--..+.-.+.++.+...+++++||...
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 193 (222)
T cd03224 148 MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR 193 (222)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4678999999999999887777777666666554568999999885
No 176
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.37 E-value=0.00036 Score=77.83 Aligned_cols=47 Identities=21% Similarity=0.177 Sum_probs=36.9
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....++|+||--.|-+...-..+.-.+.++.+...+++++||....
T Consensus 167 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~ 213 (252)
T CHL00131 167 LLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL 213 (252)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 46778999999999988877777776666665556789999997753
No 177
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.37 E-value=0.00045 Score=78.11 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=37.0
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....++||||--.|-+..--..+.-.+.++.+-..+++++||...
T Consensus 158 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~ 203 (272)
T PRK15056 158 AQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG 203 (272)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 4567899999999999988887777777766554568999999873
No 178
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.37 E-value=0.00052 Score=77.69 Aligned_cols=48 Identities=19% Similarity=0.170 Sum_probs=39.5
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~ 1151 (1162)
+.+..|+||||.-.|-++.--..|.-.+.++.+-..+++++||.....
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~ 200 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLV 200 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 567899999999999998888888777777655467899999998643
No 179
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.37 E-value=0.00034 Score=76.74 Aligned_cols=54 Identities=11% Similarity=-0.063 Sum_probs=40.0
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhh--hcccccceE
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFI--KCNAVDCFQ 1157 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~--~~~~~~~~~ 1157 (1162)
+.+..++||||--.|-+..--..+.-.+.++.+...+++++||.. .+..+.+..
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i 214 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRI 214 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEE
Confidence 457799999999999998777777666666655566899999986 455554433
No 180
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.37 E-value=0.00043 Score=78.57 Aligned_cols=50 Identities=14% Similarity=0.119 Sum_probs=40.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhcccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~~~~ 1153 (1162)
+....|+||||--.|-+...-..+.-.+.++.+ ...+++++||.......
T Consensus 160 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~ 210 (280)
T PRK13633 160 AMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE 210 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc
Confidence 467799999999999999888888777776644 36689999999866443
No 181
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.36 E-value=0.00042 Score=77.58 Aligned_cols=54 Identities=9% Similarity=-0.018 Sum_probs=39.6
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcc-cccceE
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCN-AVDCFQ 1157 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~-~~~~~~ 1157 (1162)
+....|+||||.-.|-++.--..+.-.+.++.+...+++++||..... .+.+..
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i 207 (256)
T TIGR03873 153 AQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHV 207 (256)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 356799999999999988777777666666655456899999988543 444433
No 182
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.36 E-value=0.00056 Score=75.83 Aligned_cols=52 Identities=13% Similarity=0.010 Sum_probs=37.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcc-cCceEEEehhhh-cccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSL-AGSQFLSTLFIK-CNAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l-~~~~~~~th~~~-~~~~~~ 1155 (1162)
+....|+||||--.|-+...-..+.-.+.++.+. ..+++++||... +..+.+
T Consensus 151 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d 204 (242)
T cd03295 151 AADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLAD 204 (242)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCC
Confidence 4577899999998888876666666656655443 568999999985 334444
No 183
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.35 E-value=0.0015 Score=71.19 Aligned_cols=120 Identities=24% Similarity=0.385 Sum_probs=72.1
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHH--------------HHHcCCc---c---------------cC---------Cccc
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVI--------------LAQVGAD---V---------------PA---------EIFE 1066 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivI--------------LAQiG~f---V---------------PA---------~~a~ 1066 (1162)
.+.+|+|||++||||+|..++++.. +-+-|+- | || +.+.
T Consensus 24 g~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~n~~~~~~q~~~~~~~~ 103 (213)
T cd03277 24 SLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVDNLCQFLPQDRVGEFAK 103 (213)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCccccCCceEEEchHHHHHHHh
Confidence 4789999999999999999988762 2222321 0 00 0022
Q ss_pred cCCcceeeeecCCccch----hhcccchHHHHHHHHHHHh--cCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcc-c-
Q 001077 1067 ISPVDRIFVRMGAKDHI----MAGQSTFLTELSETALMLS--SATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSL-A- 1138 (1162)
Q Consensus 1067 l~i~DrIfTRIGa~D~i----~~g~STFmvEM~Eta~IL~--~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l-~- 1138 (1162)
+.+.|.+ .+.+..+.+ ....|.=+.-+..++.+|. .+....++|+||.-.|.++.....+--.+..+..- .
T Consensus 104 ~~~~e~l-~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~ 182 (213)
T cd03277 104 LSPIELL-VKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGT 182 (213)
T ss_pred CChHhHh-eeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCC
Confidence 3333333 222222211 1123333444444444433 25677899999999999999888777666665443 2
Q ss_pred CceEEEehhh
Q 001077 1139 GSQFLSTLFI 1148 (1162)
Q Consensus 1139 ~~~~~~th~~ 1148 (1162)
.+++++||++
T Consensus 183 ~~viiith~~ 192 (213)
T cd03277 183 SQYFLITPKL 192 (213)
T ss_pred ceEEEEchhh
Confidence 3589999886
No 184
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.35 E-value=0.00078 Score=74.92 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=35.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....++||||.-.|-+..--..+.-.+.++.+ ..+++++||...
T Consensus 158 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~ 202 (246)
T PRK14269 158 AIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ 202 (246)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH
Confidence 467889999999999988766666555655654 668999999985
No 185
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.35 E-value=0.00063 Score=76.27 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=37.0
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....|+||||.-.|-+..--..+.-.+.++.+ ..+++++||...
T Consensus 171 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~ 215 (259)
T PRK14274 171 ATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ 215 (259)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH
Confidence 467789999999999998887777777777755 568999999874
No 186
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.34 E-value=0.00065 Score=79.85 Aligned_cols=47 Identities=11% Similarity=-0.060 Sum_probs=38.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcc--cCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSL--AGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l--~~~~~~~th~~~~ 1150 (1162)
+....|+||||--.|-++.--..|...+.++.+. ..+++++||-..-
T Consensus 153 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~e 201 (362)
T TIGR03258 153 AIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDD 201 (362)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHH
Confidence 5688999999999999988877777777766554 5689999998854
No 187
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.33 E-value=0.0011 Score=74.38 Aligned_cols=47 Identities=9% Similarity=0.012 Sum_probs=35.8
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....++||||--.|-++..-..|.-.+.++.+-..+++++||....
T Consensus 168 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~ 214 (257)
T PRK10619 168 AMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF 214 (257)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 35678999999988888777776666666665546789999998743
No 188
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.33 E-value=0.00063 Score=76.32 Aligned_cols=46 Identities=15% Similarity=0.134 Sum_probs=34.8
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....++||||--.|-+..--..+.-.+.++.. ..+++++||....
T Consensus 172 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~ 217 (260)
T PRK10744 172 AIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQQ 217 (260)
T ss_pred HCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHH
Confidence 467899999999999887666666665655643 4678999999854
No 189
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.33 E-value=0.00038 Score=78.63 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=35.0
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....++||||--.|-++.--..+.-.+.++.+...+++++||....
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~ 198 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDL 198 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 56789999999988887766655555555554445689999999854
No 190
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.33 E-value=0.00043 Score=78.15 Aligned_cols=45 Identities=16% Similarity=0.102 Sum_probs=33.8
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcc-cCceEEEehhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSL-AGSQFLSTLFI 1148 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l-~~~~~~~th~~ 1148 (1162)
+....++||||--.|-++.--..+...+.++.+- ..+++++||..
T Consensus 159 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~ 204 (269)
T PRK11831 159 ALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV 204 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH
Confidence 4677899999998888776666666666655443 56899999986
No 191
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.32 E-value=0.00069 Score=77.35 Aligned_cols=62 Identities=18% Similarity=0.065 Sum_probs=42.1
Q ss_pred ccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc
Q 001077 1087 QSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1087 ~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~ 1150 (1162)
.|.-+.-...+|..| +....++||||.=.|-+...-..|.-.+.++.+ ...+++++||....
T Consensus 146 LSgGq~qrv~lAraL--~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~ 208 (290)
T PRK13634 146 LSGGQMRRVAIAGVL--AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMED 208 (290)
T ss_pred CCHHHHHHHHHHHHH--HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 344444444444444 457789999999999887766666555555544 36789999999853
No 192
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.32 E-value=0.00053 Score=77.19 Aligned_cols=48 Identities=19% Similarity=0.145 Sum_probs=36.8
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhcc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~~ 1151 (1162)
+....++||||--.|-+..--..+.-.+.++.+ ...+++++||-....
T Consensus 166 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~ 214 (265)
T TIGR02769 166 AVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLV 214 (265)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH
Confidence 467789999999988887666666666666654 367899999998544
No 193
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.32 E-value=0.00096 Score=75.20 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=36.6
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....++||||--.|-++.--..+.-.+..+.+ ..+++++||....
T Consensus 179 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~ 224 (267)
T PRK14235 179 AVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQ 224 (267)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHH
Confidence 467789999999999998877777776666654 4689999998753
No 194
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.32 E-value=0.00068 Score=75.53 Aligned_cols=45 Identities=11% Similarity=0.109 Sum_probs=37.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....++||||.-.|-++.--..+.-.+.++.+ ..+++++||...
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~ 206 (250)
T PRK14240 162 AVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ 206 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH
Confidence 467899999999999998888888777777754 568999999985
No 195
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.32 E-value=0.00053 Score=77.31 Aligned_cols=46 Identities=9% Similarity=0.081 Sum_probs=35.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....++||||.-.|-+...-..+...+..+.+ ..+++++||....
T Consensus 179 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~ 224 (267)
T PRK14237 179 AVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQQ 224 (267)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH
Confidence 467789999999999888766666666665643 4689999998743
No 196
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.32 E-value=0.00083 Score=74.23 Aligned_cols=49 Identities=6% Similarity=0.001 Sum_probs=37.4
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~ 1153 (1162)
+....++||||--.|-+..--.-|.-.+.++. ...+++++||.......
T Consensus 155 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~ 203 (238)
T cd03249 155 LRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRN 203 (238)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhh
Confidence 56778999999999988777777766666665 35679999999865444
No 197
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.31 E-value=0.00046 Score=77.99 Aligned_cols=46 Identities=7% Similarity=-0.083 Sum_probs=35.1
Q ss_pred CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc
Q 001077 1105 TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1105 T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~ 1150 (1162)
....++||||--.|-+..--..+.-.+.++.+ ...+++++||....
T Consensus 171 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~ 217 (272)
T PRK13547 171 QPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNL 217 (272)
T ss_pred CCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 57799999999888887777776666666544 35689999998743
No 198
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.31 E-value=0.00078 Score=76.04 Aligned_cols=45 Identities=11% Similarity=0.068 Sum_probs=36.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....++||||--.|-+..--..+.-.+.++.+ ..+++++||...
T Consensus 170 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~ 214 (269)
T PRK14259 170 AIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ 214 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH
Confidence 467899999999999998877777776766654 467899999884
No 199
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.31 E-value=0.0011 Score=72.70 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=38.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....++|+||--.|-+..--..+.-.+.++.+...+++++||...
T Consensus 129 ~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~ 174 (223)
T TIGR03771 129 ATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLA 174 (223)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 4678999999999999988888887777776555668999999885
No 200
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.30 E-value=0.00094 Score=73.61 Aligned_cols=47 Identities=13% Similarity=0.153 Sum_probs=34.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcc-cCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSL-AGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l-~~~~~~~th~~~~ 1150 (1162)
|....++||||-..|=++.-.--|...+.++.+- ..+++++||-+..
T Consensus 154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~ 201 (235)
T COG1122 154 AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLEL 201 (235)
T ss_pred HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHH
Confidence 4678899999988777766665555555555554 4679999999843
No 201
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.30 E-value=0.00056 Score=77.55 Aligned_cols=53 Identities=17% Similarity=0.056 Sum_probs=40.5
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhcccccce
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKCNAVDCF 1156 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~~~~~~~ 1156 (1162)
+.+..++||||.-.|-+...-..+.-.+.++.+ ...+++++||........+.
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~ 209 (277)
T PRK13642 156 ALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDR 209 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCE
Confidence 457789999999999988888877776666655 36789999999866544443
No 202
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.29 E-value=0.00055 Score=77.17 Aligned_cols=47 Identities=15% Similarity=0.051 Sum_probs=36.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~ 1150 (1162)
+....++||||--.|-++.--..|.-.+.++.+ ...+++++||....
T Consensus 165 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~ 212 (267)
T PRK15112 165 ILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGM 212 (267)
T ss_pred HhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHH
Confidence 467889999999999988666666666666654 35689999998844
No 203
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.29 E-value=0.00093 Score=74.56 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=36.5
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....++||||--.|-+...-..+.-.+.++.+ ..+++++||....
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~~ 210 (253)
T PRK14242 165 AVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQQ 210 (253)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHHH
Confidence 467789999999999988777777776766644 4689999998853
No 204
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.28 E-value=0.00087 Score=74.71 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=36.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....++||||.-.|-+..--..+.-.+.++.+ ..+++++||....
T Consensus 162 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~ 207 (250)
T PRK14245 162 AVSPSVLLMDEPASALDPISTAKVEELIHELKK-DYTIVIVTHNMQQ 207 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHH
Confidence 467889999999999988777777666666644 5689999998853
No 205
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.28 E-value=0.00096 Score=78.28 Aligned_cols=53 Identities=8% Similarity=0.014 Sum_probs=38.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhh-cccccce
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIK-CNAVDCF 1156 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~-~~~~~~~ 1156 (1162)
+....++||||--.|-++.--..|...+.++.+ ...+++++||... +..+.+.
T Consensus 144 ~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~ 198 (352)
T PRK11144 144 LTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADR 198 (352)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCE
Confidence 467789999999888887777766666666544 3568999999884 3344443
No 206
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.28 E-value=0.00085 Score=73.56 Aligned_cols=51 Identities=14% Similarity=0.084 Sum_probs=37.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc-ccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC-NAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~-~~~~~ 1155 (1162)
+....++||||--.|-+..--..+.-.+.++.+- .+++++||.... ..+.+
T Consensus 157 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d 208 (227)
T cd03260 157 ANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVAD 208 (227)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCC
Confidence 4567899999999888877666666666665444 689999999853 33444
No 207
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.28 E-value=0.00061 Score=74.65 Aligned_cols=47 Identities=17% Similarity=0.056 Sum_probs=36.6
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcc-cCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSL-AGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l-~~~~~~~th~~~~ 1150 (1162)
+.+..++||||--.|-+..--..+.-.+.++.+- ..+++++||....
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 208 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGV 208 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 4677999999999999887766666666666543 5689999998854
No 208
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.27 E-value=0.0015 Score=72.54 Aligned_cols=62 Identities=16% Similarity=0.078 Sum_probs=41.1
Q ss_pred ccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1087 QSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1087 ~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
.|.-+.-...++..| +....++||||.-.|-+..--..+.-.+.++.+...+++++||....
T Consensus 146 LS~G~~qrv~laral--~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~ 207 (248)
T PRK09580 146 FSGGEKKRNDILQMA--VLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI 207 (248)
T ss_pred CCHHHHHHHHHHHHH--HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 344443333344443 35678999999988888776666666555565555689999997644
No 209
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.27 E-value=0.0011 Score=73.99 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=35.6
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
++...++||||--.|-+..--..|...+.++.+ ..+++++||...
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~ 209 (251)
T PRK14244 165 AVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK 209 (251)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH
Confidence 467899999999999888766667666666654 578999999884
No 210
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.26 E-value=0.00089 Score=74.55 Aligned_cols=46 Identities=11% Similarity=0.116 Sum_probs=35.7
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....|+||||--.|-+..--..|.-.+.++.+ ..+++++||....
T Consensus 161 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~ 206 (249)
T PRK14253 161 AMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQ 206 (249)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHH
Confidence 457789999999999988766666666666654 4689999998854
No 211
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.26 E-value=0.00065 Score=77.12 Aligned_cols=50 Identities=16% Similarity=0.107 Sum_probs=37.5
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhcccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~~~~ 1153 (1162)
+....|+||||.-.|-+...-..+.-.+..+.+ ...+++++||.......
T Consensus 156 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~ 206 (279)
T PRK13650 156 AMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVAL 206 (279)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence 567899999999999988766666555555554 36789999999865443
No 212
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.24 E-value=0.0014 Score=70.62 Aligned_cols=54 Identities=15% Similarity=0.056 Sum_probs=38.6
Q ss_pred HHHHHhc--CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcc---cCceEEEehhhhc
Q 001077 1097 TALMLSS--ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSL---AGSQFLSTLFIKC 1150 (1162)
Q Consensus 1097 ta~IL~~--AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l---~~~~~~~th~~~~ 1150 (1162)
++..|.. +....++|+||.-.|.+......+...+.++..- ..+++++||.+..
T Consensus 120 ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~ 178 (198)
T cd03276 120 VCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG 178 (198)
T ss_pred HHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc
Confidence 4444433 5788999999999999988877776666664321 2368888898853
No 213
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.24 E-value=0.0007 Score=75.57 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=35.5
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....|+||||--.|-+..--..+.-.+.++.+ ..+++++||....
T Consensus 164 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~ 209 (252)
T PRK14256 164 AVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQ 209 (252)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHH
Confidence 356789999999999888766666666666654 4689999998853
No 214
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.24 E-value=0.00067 Score=76.36 Aligned_cols=52 Identities=12% Similarity=-0.002 Sum_probs=39.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhh-cccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIK-CNAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~-~~~~~~ 1155 (1162)
+....|+||||.-.|-+...-..+.-.+.++.+ ...+++++||... +..+.+
T Consensus 159 ~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d 212 (265)
T PRK10253 159 AQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYAS 212 (265)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 467899999999999988877777777766654 3568999999985 444444
No 215
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.23 E-value=0.0015 Score=71.95 Aligned_cols=46 Identities=11% Similarity=-0.030 Sum_probs=36.6
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcc-cCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSL-AGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l-~~~~~~~th~~~ 1149 (1162)
+....++||||--.|-+..--..+.-.+.++.+. ..+++++||...
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~ 192 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE 192 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 4677999999999999887777776666666543 678999999884
No 216
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.23 E-value=0.00058 Score=74.19 Aligned_cols=46 Identities=15% Similarity=0.034 Sum_probs=36.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~ 1149 (1162)
+....++||||--.|-+..--..|.-.+.++.+ ...+++++||...
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~ 193 (214)
T cd03297 147 AAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS 193 (214)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH
Confidence 567899999999999988777777666666644 3568999999884
No 217
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.22 E-value=0.00068 Score=77.18 Aligned_cols=46 Identities=11% Similarity=0.105 Sum_probs=36.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....|+||||--.|-+..--..|...+.++.+ ..+++++||....
T Consensus 196 ~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~~ 241 (285)
T PRK14254 196 APDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQQ 241 (285)
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH
Confidence 457789999999999988766677666666654 3689999998854
No 218
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.22 E-value=0.00076 Score=75.35 Aligned_cols=46 Identities=11% Similarity=0.115 Sum_probs=37.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....|+||||--.|-+..--..|.-.+.++.+ ..+++++||....
T Consensus 166 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~~ 211 (254)
T PRK14273 166 AIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQQ 211 (254)
T ss_pred HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH
Confidence 356789999999999998888777777777754 5688999999864
No 219
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.22 E-value=0.00071 Score=79.47 Aligned_cols=46 Identities=9% Similarity=0.100 Sum_probs=36.0
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~ 1149 (1162)
+....++||||--.|-+..--..|...+.++.+ ...+++++||...
T Consensus 147 ~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~ 193 (354)
T TIGR02142 147 LSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ 193 (354)
T ss_pred HcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 456789999999999888777777666666554 3567999999884
No 220
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.22 E-value=0.00064 Score=75.86 Aligned_cols=47 Identities=23% Similarity=0.210 Sum_probs=35.0
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~ 1150 (1162)
++...++||||.-.|-++.--..+.-.+.++.. ...+++++||....
T Consensus 164 ~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~ 211 (253)
T TIGR02323 164 VTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGV 211 (253)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 567889999999888877766666655555433 35689999998754
No 221
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.20 E-value=0.00064 Score=85.92 Aligned_cols=43 Identities=23% Similarity=0.220 Sum_probs=31.5
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....|+||||--.| .|-.++.|-...+.++..+++++||-..
T Consensus 165 ~~~P~lLLLDEPtn~---LD~~~~~~L~~~L~~~~~tviivsHd~~ 207 (638)
T PRK10636 165 ICRSDLLLLDEPTNH---LDLDAVIWLEKWLKSYQGTLILISHDRD 207 (638)
T ss_pred ccCCCEEEEcCCCCc---CCHHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 467789999997555 5555666644446667788999999873
No 222
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.19 E-value=0.00074 Score=75.65 Aligned_cols=45 Identities=11% Similarity=0.088 Sum_probs=35.3
Q ss_pred CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1105 TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1105 T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
....++||||--.|-+...-..+.-.+.++.+ ..+++++||....
T Consensus 165 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~~ 209 (258)
T PRK14241 165 VEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQQ 209 (258)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH
Confidence 56789999999999987777777666666644 4689999998853
No 223
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.19 E-value=0.0021 Score=73.11 Aligned_cols=51 Identities=12% Similarity=-0.065 Sum_probs=35.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHH-HhhcccCceEEEehhhhcccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSS-GFQSLAGSQFLSTLFIKCNAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~-~~~~l~~~~~~~th~~~~~~~~~ 1155 (1162)
+....++|+||--.|-++..-..+...+. .+.+ ..+++++||........+
T Consensus 175 ~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~-~~tIiiisH~~~~~~~~d 226 (282)
T cd03291 175 YKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMA-NKTRILVTSKMEHLKKAD 226 (282)
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhC-CCEEEEEeCChHHHHhCC
Confidence 46789999999999998866555543332 3332 568999999986544433
No 224
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.19 E-value=0.0013 Score=77.70 Aligned_cols=47 Identities=13% Similarity=-0.002 Sum_probs=37.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~ 1150 (1162)
+....|+||||--.|-+..--..|...+..+.+ ...+++++||-..-
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~e 207 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEE 207 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 467889999999999988777777766666544 57789999998753
No 225
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.19 E-value=0.00082 Score=82.87 Aligned_cols=46 Identities=7% Similarity=0.060 Sum_probs=35.6
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....++||||--.|=++.--.-|.-.+.++.+...+++++||-..
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~ 201 (510)
T PRK15439 156 MRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP 201 (510)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4678899999998888877766666656656555568999999874
No 226
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.18 E-value=0.0021 Score=69.32 Aligned_cols=113 Identities=22% Similarity=0.262 Sum_probs=78.6
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCc-----------------------cccCCcceeeeecCCccch
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-----------------------FEISPVDRIFVRMGAKDHI 1083 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~-----------------------a~l~i~DrIfTRIGa~D~i 1083 (1162)
..++.|-|||++||||+||+++ |.- |+.+ +.+|=-.+||.++--.+||
T Consensus 29 Geiv~llG~NGaGKTTlLkti~--------Gl~-~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL 99 (237)
T COG0410 29 GEIVALLGRNGAGKTTLLKTIM--------GLV-RPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENL 99 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHh--------CCC-CCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHH
Confidence 4689999999999999999987 432 2221 1223345688888888888
Q ss_pred hhcccchH---------HHH-------------------------HHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHH
Q 001077 1084 MAGQSTFL---------TEL-------------------------SETALMLSSATRNSLVVLDELGRGTSTSDGQAIAV 1129 (1162)
Q Consensus 1084 ~~g~STFm---------vEM-------------------------~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~ 1129 (1162)
.-|..+.- .++ .-++..| .+...|.||||---|-+|.==.-|..
T Consensus 100 ~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRAL--m~~PklLLLDEPs~GLaP~iv~~I~~ 177 (237)
T COG0410 100 LLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARAL--MSRPKLLLLDEPSEGLAPKIVEEIFE 177 (237)
T ss_pred hhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHH--hcCCCEEEecCCccCcCHHHHHHHHH
Confidence 87644432 122 2244444 36778999999999999987777777
Q ss_pred HHHHhhcc-cCceEEEehhhhc
Q 001077 1130 FSSGFQSL-AGSQFLSTLFIKC 1150 (1162)
Q Consensus 1130 A~~~~~~l-~~~~~~~th~~~~ 1150 (1162)
++..+.+. .-++++.......
T Consensus 178 ~i~~l~~~~g~tIlLVEQn~~~ 199 (237)
T COG0410 178 AIKELRKEGGMTILLVEQNARF 199 (237)
T ss_pred HHHHHHHcCCcEEEEEeccHHH
Confidence 77777654 3488888888743
No 227
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.18 E-value=0.0011 Score=74.03 Aligned_cols=46 Identities=13% Similarity=0.061 Sum_probs=35.7
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....++||||--.|-++.--..+.-.+.++.+ ..+++++||....
T Consensus 165 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~ 210 (253)
T PRK14267 165 AMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQ 210 (253)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHH
Confidence 467899999999999988766666666666644 4689999998853
No 228
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.17 E-value=0.00089 Score=76.99 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=37.9
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh-cccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK-CNAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~-~~~~~~ 1155 (1162)
+....|+||||.-.|-++..-..+.-.+.++.+...+++++||.+. +..+.+
T Consensus 181 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ad 233 (305)
T PRK13651 181 AMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTK 233 (305)
T ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCC
Confidence 4677999999999999876655555555556555678999999985 334443
No 229
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.17 E-value=0.0029 Score=68.94 Aligned_cols=50 Identities=12% Similarity=-0.007 Sum_probs=36.4
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHH--HHHHhhcccCceEEEehhhhcccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAV--FSSGFQSLAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~--A~~~~~~l~~~~~~~th~~~~~~~ 1153 (1162)
+.+..++|+||--.|-+...-..+.- ....+.+...+++++||-......
T Consensus 156 ~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~ 207 (218)
T cd03290 156 YQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPH 207 (218)
T ss_pred hhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhh
Confidence 35678999999999998877666654 233355556789999999865443
No 230
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.17 E-value=0.00092 Score=74.49 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=35.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+.+..++||||--.|-++..-.-|...+.++.+ ..+++++||....
T Consensus 162 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~ 207 (250)
T PRK14247 162 AFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQ 207 (250)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH
Confidence 467899999999888887766666666666644 5789999998853
No 231
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.16 E-value=0.00077 Score=75.37 Aligned_cols=47 Identities=13% Similarity=0.034 Sum_probs=35.5
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~ 1150 (1162)
+....++||||--.|-+..--..+.-.+.++.+ ...+++++||....
T Consensus 156 ~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~ 203 (254)
T PRK10418 156 LCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGV 203 (254)
T ss_pred hcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH
Confidence 467789999999999988766666655555543 35689999998743
No 232
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.16 E-value=0.00061 Score=79.62 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=35.9
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~ 1150 (1162)
+....++||||--.|-++.--..|.-.+.++.+ ...+++++||.+..
T Consensus 156 ~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~ 203 (343)
T PRK11153 156 ASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDV 203 (343)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 467889999999999887776666666665543 35689999999853
No 233
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.16 E-value=0.0015 Score=76.61 Aligned_cols=46 Identities=9% Similarity=-0.004 Sum_probs=36.6
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~ 1149 (1162)
+....|+||||--.|-+..--..|...+..+.+ ...+++++||...
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 196 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV 196 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 568899999999999888777777666666544 4678999999874
No 234
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.16 E-value=0.0017 Score=76.15 Aligned_cols=48 Identities=8% Similarity=-0.018 Sum_probs=37.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhcc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~~ 1151 (1162)
+....|+||||--.|-++.--..|-..+.++.+ +..+++++||....+
T Consensus 152 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~ 200 (351)
T PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEA 200 (351)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence 467899999999999887777777666666543 567899999998643
No 235
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.16 E-value=0.00084 Score=74.44 Aligned_cols=47 Identities=13% Similarity=0.131 Sum_probs=35.5
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~ 1150 (1162)
+....++||||--.|-+...-..+.-.+.++.+ ...+++++||....
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~ 194 (241)
T PRK14250 147 ANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQ 194 (241)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence 467789999999999888666666555555544 36789999999854
No 236
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.16 E-value=0.0011 Score=73.61 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=39.5
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh-cccccce
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK-CNAVDCF 1156 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~-~~~~~~~ 1156 (1162)
+....|+||||--.|-+...-..+.-.+.++.+ ..+++++||... +..+.+.
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~ 212 (247)
T TIGR00972 160 AVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDR 212 (247)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCE
Confidence 457789999999999998887777776666655 368999999985 4444443
No 237
>PRK13695 putative NTPase; Provisional
Probab=97.15 E-value=0.0027 Score=66.74 Aligned_cols=116 Identities=17% Similarity=0.187 Sum_probs=57.5
Q ss_pred EEEEccCCCChhHHHHHHHHHHHHHHcCCccc---CC----ccccCCc---------ceeeeecCCccch-hhcccchHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVCLAVILAQVGADVP---AE----IFEISPV---------DRIFVRMGAKDHI-MAGQSTFLT 1092 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaLivILAQiG~fVP---A~----~a~l~i~---------DrIfTRIGa~D~i-~~g~STFmv 1092 (1162)
++|||+|++||||+++.++-- +..-|..+- ++ ......+ ...+.+++..+.. ....-.+..
T Consensus 3 i~ltG~~G~GKTTll~~i~~~--l~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ls 80 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAEL--LKEEGYKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVVNLE 80 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEEehH
Confidence 789999999999999986432 222354421 01 0000111 1122333321111 111112222
Q ss_pred HHHHHHHHH--hcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1093 ELSETALML--SSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1093 EM~Eta~IL--~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
.+.+....+ +......++||||+|. +...+ ....-++..+.+....+++++|-..
T Consensus 81 gle~~~~~l~~~~l~~~~~lllDE~~~-~e~~~-~~~~~~l~~~~~~~~~~i~v~h~~~ 137 (174)
T PRK13695 81 DLERIGIPALERALEEADVIIIDEIGK-MELKS-PKFVKAVEEVLDSEKPVIATLHRRS 137 (174)
T ss_pred HHHHHHHHHHHhccCCCCEEEEECCCc-chhhh-HHHHHHHHHHHhCCCeEEEEECchh
Confidence 233332222 2234778999999963 33333 2333344444456678888999643
No 238
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.15 E-value=0.0011 Score=73.76 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=35.7
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....|+||||--.|-++.--..+.-.+.++.+ ..+++++||....
T Consensus 163 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~ 208 (251)
T PRK14251 163 AVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQQ 208 (251)
T ss_pred hcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHHH
Confidence 457789999999999988776666666666644 4689999998853
No 239
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.14 E-value=0.0012 Score=73.58 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=36.5
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+...+++||||--.|-+..--..+.-.+.++.+ ..+++++||....
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tilivsh~~~~ 208 (251)
T PRK14249 163 AIEPEVILMDEPCSALDPVSTMRIEELMQELKQ-NYTIAIVTHNMQQ 208 (251)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH
Confidence 567899999999999998877777776666643 5689999998743
No 240
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.13 E-value=0.0015 Score=76.53 Aligned_cols=52 Identities=17% Similarity=0.055 Sum_probs=38.8
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc-ccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC-NAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~-~~~~~ 1155 (1162)
+....++||||--.|-+..--..+...+.++.+ ...+++++||...- ..+.+
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d 203 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMAD 203 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC
Confidence 467799999999999887777777666666544 57789999999853 34444
No 241
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.13 E-value=0.0013 Score=82.09 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=30.6
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....++||||--.|=+. .+..+....+.++..+++++||-..
T Consensus 179 ~~~p~vlLLDEPt~~LD~---~~~~~l~~~L~~~~~tviiisHd~~ 221 (556)
T PRK11819 179 LEKPDMLLLDEPTNHLDA---ESVAWLEQFLHDYPGTVVAVTHDRY 221 (556)
T ss_pred hCCCCEEEEcCCCCcCCh---HHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 567889999997666554 4455544445566678999999884
No 242
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=97.12 E-value=0.00053 Score=58.14 Aligned_cols=43 Identities=23% Similarity=0.482 Sum_probs=38.8
Q ss_pred ccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEccC-Cchhhccc
Q 001077 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD-GEDELLDL 149 (1162)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd-g~~e~l~l 149 (1162)
-+|..|.+.| .|..||.|+|+++++. +.+.|.|.| |..|++..
T Consensus 4 ~~G~~~~a~~-~d~~wyra~I~~~~~~-~~~~V~f~D~G~~~~v~~ 47 (57)
T smart00333 4 KVGDKVAARW-EDGEWYRARIIKVDGE-QLYEVFFIDYGNEEVVPP 47 (57)
T ss_pred CCCCEEEEEe-CCCCEEEEEEEEECCC-CEEEEEEECCCccEEEeH
Confidence 4799999999 9999999999999998 889999977 99987753
No 243
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.12 E-value=0.0013 Score=74.13 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=35.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....++||||--.|-+..--..+.-.+..+.+ ..+++++||...
T Consensus 180 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~ 224 (268)
T PRK14248 180 AMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ 224 (268)
T ss_pred hCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH
Confidence 467789999999999988777777666666644 468899999874
No 244
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.12 E-value=0.0018 Score=75.92 Aligned_cols=46 Identities=13% Similarity=0.081 Sum_probs=37.4
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~ 1149 (1162)
+....|+||||--.|-+..--..|...+.++.+ ...+++++||...
T Consensus 152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ 198 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE 198 (353)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 467899999999999998887777776766654 4678999999985
No 245
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.12 E-value=0.0011 Score=81.91 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=41.7
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1095 SETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1095 ~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
..+|..| +....|+||||--.|=++.--..|...+.++.+...+++++||...
T Consensus 412 l~la~al--~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~ 464 (510)
T PRK15439 412 VLIAKCL--EASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE 464 (510)
T ss_pred HHHHHHH--hhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 3344444 4577899999999999998888888877777665678999999984
No 246
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.12 E-value=0.0019 Score=72.02 Aligned_cols=73 Identities=15% Similarity=0.060 Sum_probs=50.4
Q ss_pred cchHHHHHHHHHHHhc--CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccceEeeec
Q 001077 1088 STFLTELSETALMLSS--ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDCFQLTIT 1161 (1162)
Q Consensus 1088 STFmvEM~Eta~IL~~--AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~~~~~~~ 1161 (1162)
|.-+.....++.+|.. ..+..++|+||.-.|.++..-..+.-.+.++.+ ..+++++||...+-...+--+.||
T Consensus 168 S~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~-g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 168 SGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFK-GSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred CHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHhCCEEEEEE
Confidence 4444455556666543 245579999999999998887777766666543 557999999976666555555554
No 247
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.12 E-value=0.0011 Score=82.17 Aligned_cols=58 Identities=10% Similarity=-0.001 Sum_probs=35.9
Q ss_pred ccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1087 QSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1087 ~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
.|.=+.-...+|..| +....++||||--.|=+..- ..+....+.+...+++++||-..
T Consensus 156 LSgGq~qrv~lA~aL--~~~p~lLlLDEPt~~LD~~~---~~~l~~~l~~~~~tiiivsHd~~ 213 (530)
T PRK15064 156 VAPGWKLRVLLAQAL--FSNPDILLLDEPTNNLDINT---IRWLEDVLNERNSTMIIISHDRH 213 (530)
T ss_pred cCHHHHHHHHHHHHH--hcCCCEEEEcCCCcccCHHH---HHHHHHHHHhCCCeEEEEeCCHH
Confidence 344444444455444 45678999999876655444 43433334455678999999884
No 248
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.11 E-value=0.0011 Score=78.79 Aligned_cols=53 Identities=11% Similarity=0.028 Sum_probs=39.8
Q ss_pred HHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcc
Q 001077 1097 TALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1097 ta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~ 1151 (1162)
+|..| +....++||||--.|-+..--..|--.+.++.+...+++++||.+...
T Consensus 150 IArAL--~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~ 202 (402)
T PRK09536 150 LARAL--AQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLA 202 (402)
T ss_pred HHHHH--HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 44444 457789999999999988776667666666655566899999998654
No 249
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.10 E-value=0.00065 Score=76.15 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=37.0
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+++..++||||.-.|-+..--..+...+.++.+ ..+++++||...
T Consensus 169 ~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~ 213 (257)
T PRK14246 169 ALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ 213 (257)
T ss_pred HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH
Confidence 467799999999999988877777777777754 578999999975
No 250
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.10 E-value=0.0015 Score=75.72 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=39.5
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh-cccccce
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK-CNAVDCF 1156 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~-~~~~~~~ 1156 (1162)
+....++||||--.|-++.--..|.-.+.++.....+++++||... ...+.+.
T Consensus 192 ~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adr 245 (320)
T PRK13631 192 AIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADE 245 (320)
T ss_pred HcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCE
Confidence 4678899999999998887777776666666544668999999986 3344443
No 251
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.09 E-value=0.0019 Score=73.27 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=36.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....|+||||.-.|-+..--..|.-.+.++.+ ..+++++||....
T Consensus 179 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~ 224 (276)
T PRK14271 179 AVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQ 224 (276)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH
Confidence 456789999999999988777777666666655 4689999998853
No 252
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.09 E-value=0.0025 Score=70.43 Aligned_cols=53 Identities=9% Similarity=-0.038 Sum_probs=38.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc-ccccce
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC-NAVDCF 1156 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~-~~~~~~ 1156 (1162)
+....++|+||.-.|-+...-.-+...+.++.. ...+++++||.... ..+.+.
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~ 199 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADK 199 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 456789999999999887777666665655543 36789999999853 434443
No 253
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.09 E-value=0.0011 Score=83.95 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=31.8
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....|+||||--.| .|-.++.|-...+.++..+++++||-..
T Consensus 172 ~~~P~lLLLDEPt~~---LD~~~~~~L~~~L~~~~~tvlivsHd~~ 214 (635)
T PRK11147 172 VSNPDVLLLDEPTNH---LDIETIEWLEGFLKTFQGSIIFISHDRS 214 (635)
T ss_pred hcCCCEEEEcCCCCc---cCHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 467889999997554 5556666755556677789999999863
No 254
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.09 E-value=0.00084 Score=75.22 Aligned_cols=48 Identities=21% Similarity=0.173 Sum_probs=35.7
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhcc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~~ 1151 (1162)
+.+..++||||--.|-++.--..|.-.+.++.+ ...+++++||.....
T Consensus 167 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~ 215 (258)
T PRK11701 167 VTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVA 215 (258)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH
Confidence 568899999999999887666656555555543 356899999988543
No 255
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.09 E-value=0.0017 Score=72.95 Aligned_cols=52 Identities=15% Similarity=0.074 Sum_probs=39.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh-cccccce
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK-CNAVDCF 1156 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~-~~~~~~~ 1156 (1162)
+....|+||||.-.|-+...-.-+.-.+.++.+ ..+++++||... +..+.+.
T Consensus 165 ~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~~i~~~~d~ 217 (261)
T PRK14263 165 ATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQQAIRVADT 217 (261)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCE
Confidence 467899999999999988777777777776654 468899999985 4444443
No 256
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.09 E-value=0.0015 Score=73.51 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=36.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....|+||||--.|-+...-..+.-.+.++.+ ..+++++||...
T Consensus 167 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~ 211 (264)
T PRK14243 167 AVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ 211 (264)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH
Confidence 357789999999999888877777776766655 368999999884
No 257
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.08 E-value=0.0013 Score=77.24 Aligned_cols=47 Identities=13% Similarity=0.045 Sum_probs=39.0
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~ 1150 (1162)
+....++||||--.|-++.--..|.-.+..+.+ ...+++++||-+..
T Consensus 145 ~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~e 192 (363)
T TIGR01186 145 AAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDE 192 (363)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 577899999999999999888888777777654 46789999999863
No 258
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.08 E-value=0.0011 Score=81.19 Aligned_cols=46 Identities=17% Similarity=0.162 Sum_probs=35.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....++||||--.|=++.--.-+.-.+.++.+...+++++||...
T Consensus 151 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~ 196 (490)
T PRK10938 151 MSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD 196 (490)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4678899999998888877766666666666554568999999874
No 259
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.08 E-value=0.00072 Score=66.37 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=20.8
Q ss_pred ceEEEEccCCCChhHHHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
+.++|+||+++||||+++.++...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 468999999999999999987443
No 260
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.08 E-value=0.0018 Score=72.12 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=36.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....++||||--.|-+..--..+.-.+.++.+ ..+++++||...
T Consensus 162 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~ 206 (250)
T PRK14266 162 AVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ 206 (250)
T ss_pred HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH
Confidence 467889999999999998777777776766654 568999999884
No 261
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.07 E-value=0.002 Score=72.30 Aligned_cols=68 Identities=15% Similarity=0.080 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhcC-CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccceEe
Q 001077 1091 LTELSETALMLSSA-TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDCFQL 1158 (1162)
Q Consensus 1091 mvEM~Eta~IL~~A-T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~~~~ 1158 (1162)
+.-...++..|-.. +...|+||||--.|-+..+-..+...+..+.+...+++++||........++-+
T Consensus 174 e~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~aD~ii 242 (261)
T cd03271 174 EAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWII 242 (261)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 33333344444332 235899999999999999988887777777777789999999886555555443
No 262
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.07 E-value=0.0014 Score=73.85 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=35.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....++||||.-.|-+..--..+.-.+..+.+ ..+++++||...
T Consensus 177 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~ 221 (265)
T PRK14252 177 ATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ 221 (265)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH
Confidence 467889999999999988776666666666654 468999999884
No 263
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.06 E-value=0.0019 Score=76.31 Aligned_cols=54 Identities=13% Similarity=0.027 Sum_probs=40.0
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHh-hcccCceEEEehhhh-cccccceE
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGF-QSLAGSQFLSTLFIK-CNAVDCFQ 1157 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~-~~l~~~~~~~th~~~-~~~~~~~~ 1157 (1162)
+....|+||||--.|-+..--..|...+..+ .++..+++++||-.. +..+.+.-
T Consensus 165 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri 220 (377)
T PRK11607 165 AKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRI 220 (377)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE
Confidence 4678999999999999887777776656554 346778999999885 34555543
No 264
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.05 E-value=0.00098 Score=79.21 Aligned_cols=47 Identities=9% Similarity=-0.034 Sum_probs=37.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~ 1150 (1162)
+....++||||--.|-++.--..|.-.+.++.+ ...+++++||-...
T Consensus 180 ~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~ 227 (400)
T PRK10070 180 AINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDE 227 (400)
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHH
Confidence 567899999999999998877777666666654 46689999998743
No 265
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.05 E-value=0.0027 Score=71.93 Aligned_cols=122 Identities=20% Similarity=0.129 Sum_probs=74.6
Q ss_pred cceEEEEccCCCChhHHHHHHHHHH-------------------HHHHcCCcccCCcccc--CCccee--e---------
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAV-------------------ILAQVGADVPAEIFEI--SPVDRI--F--------- 1074 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv-------------------ILAQiG~fVPA~~a~l--~i~DrI--f--------- 1074 (1162)
..++.|.|||++||||+||.++=+. -+.+.-+|||-+..-+ ++.|.| |
T Consensus 30 Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~ 109 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIW 109 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhccCCCHHHHH
Confidence 4589999999999999999998442 1112224566553211 222333 1
Q ss_pred ---eecCCccchh---hc-----------ccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcc
Q 001077 1075 ---VRMGAKDHIM---AG-----------QSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSL 1137 (1162)
Q Consensus 1075 ---TRIGa~D~i~---~g-----------~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l 1137 (1162)
.++|-.+.+. .+ .|.-+.-...++..| +....++||||--.|-++.--..|.-.+.++. .
T Consensus 110 ~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal--l~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~ 186 (275)
T cd03289 110 KVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV--LSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-A 186 (275)
T ss_pred HHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEECccccCCHHHHHHHHHHHHHhc-C
Confidence 1222211111 11 444444444444444 46778999999999999887777777666553 3
Q ss_pred cCceEEEehhhhcc
Q 001077 1138 AGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1138 ~~~~~~~th~~~~~ 1151 (1162)
..+++++||.....
T Consensus 187 ~~tii~isH~~~~i 200 (275)
T cd03289 187 DCTVILSEHRIEAM 200 (275)
T ss_pred CCEEEEEECCHHHH
Confidence 57889999988543
No 266
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=97.04 E-value=0.0018 Score=72.25 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=38.4
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh-cccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK-CNAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~-~~~~~~ 1155 (1162)
+.+..|+||||--.|-+...-.-|...+.++.+ ..+++++||... +..+.+
T Consensus 164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d 215 (252)
T PRK14239 164 ATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRISD 215 (252)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHhCC
Confidence 467889999999999988877777766666644 468999999874 444433
No 267
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.02 E-value=0.0013 Score=73.29 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=37.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....++||||.-.|-+...-..+.-.+.++.+ ..+++++||....
T Consensus 164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~ 209 (252)
T PRK14255 164 AVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQ 209 (252)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHH
Confidence 467789999999999998888778777776654 4689999998754
No 268
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.02 E-value=0.002 Score=76.08 Aligned_cols=47 Identities=11% Similarity=0.005 Sum_probs=38.8
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~ 1150 (1162)
++...++||||--.|-++..-..+.-.+.++.+ ...+++++||....
T Consensus 180 a~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e 227 (382)
T TIGR03415 180 AMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDE 227 (382)
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 467899999999999998888888777777655 47789999998864
No 269
>PRK13409 putative ATPase RIL; Provisional
Probab=97.02 E-value=0.0015 Score=81.76 Aligned_cols=60 Identities=10% Similarity=-0.050 Sum_probs=43.5
Q ss_pred ccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1087 QSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1087 ~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
.|.=+.-...+|..| +....++||||--.|=+...-..+...+.++.+ ..+++++||...
T Consensus 213 LSgGe~qrv~ia~al--~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~ 272 (590)
T PRK13409 213 LSGGELQRVAIAAAL--LRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA 272 (590)
T ss_pred CCHHHHHHHHHHHHH--hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 333333333444444 467789999999988888887777777777766 788999999874
No 270
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.01 E-value=0.00085 Score=82.65 Aligned_cols=47 Identities=11% Similarity=0.098 Sum_probs=37.7
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....++||||--.|=++..-..|.-.+.++.+...+++++||-...
T Consensus 159 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~ 205 (506)
T PRK13549 159 NKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNE 205 (506)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHH
Confidence 46788999999999998887777777666665556689999998753
No 271
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.00 E-value=0.003 Score=73.75 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=36.7
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~ 1150 (1162)
++...++|+||--.|-++.--..|.-.+..+.+ +..+++++||.+..
T Consensus 156 ~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~ 203 (343)
T TIGR02314 156 ASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDV 203 (343)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 577899999999999888777777665666543 56789999998854
No 272
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.00 E-value=0.0014 Score=74.68 Aligned_cols=68 Identities=15% Similarity=0.059 Sum_probs=45.7
Q ss_pred ccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc-ccccce
Q 001077 1087 QSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC-NAVDCF 1156 (1162)
Q Consensus 1087 ~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~-~~~~~~ 1156 (1162)
.|.-+.-...+|.+| +....++||||.-.|-+...-..+.-.+.++.. ...+++++||.... ..+.+.
T Consensus 146 LSgGq~qrv~laraL--~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dr 215 (286)
T PRK13646 146 MSGGQMRKIAIVSIL--AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADE 215 (286)
T ss_pred CCHHHHHHHHHHHHH--HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCE
Confidence 344444333444444 356789999999999988877777766666654 35789999999853 334443
No 273
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.00 E-value=0.002 Score=80.28 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=29.9
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....++||||--.|=++ .+..+....+.++..+++++||-..
T Consensus 177 ~~~p~lLLLDEPt~~LD~---~~~~~l~~~L~~~~~tvIiisHd~~ 219 (552)
T TIGR03719 177 LSKPDMLLLDEPTNHLDA---ESVAWLEQHLQEYPGTVVAVTHDRY 219 (552)
T ss_pred hcCCCEEEEcCCCCCCCh---HHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 567889999998665554 4444433335556678999999873
No 274
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=97.00 E-value=0.0018 Score=73.26 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=36.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
++...++||||--.|-+..--.-+.-.+.++.+ ..+++++||....
T Consensus 184 ~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~ 229 (272)
T PRK14236 184 AIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQ 229 (272)
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHH
Confidence 468899999999999987766666666666655 4689999999843
No 275
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.99 E-value=0.027 Score=71.46 Aligned_cols=43 Identities=21% Similarity=0.147 Sum_probs=33.4
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+.+..|+||||--.|=+..--..|.-++.++ ..+++++||-..
T Consensus 446 ~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~gtvi~vSHd~~ 488 (638)
T PRK10636 446 WQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EGALVVVSHDRH 488 (638)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCeEEEEeCCHH
Confidence 3577899999998888877777666666555 568999999763
No 276
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.99 E-value=0.0032 Score=70.54 Aligned_cols=48 Identities=6% Similarity=0.038 Sum_probs=35.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNA 1152 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~ 1152 (1162)
+...+++||||--.|-++.--..+...+.++.+ ..+++++||......
T Consensus 172 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~ 219 (257)
T cd03288 172 VRKSSILIMDEATASIDMATENILQKVVMTAFA-DRTVVTIAHRVSTIL 219 (257)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcC-CCEEEEEecChHHHH
Confidence 567799999999999988765555444444433 578899999986544
No 277
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.99 E-value=0.0021 Score=71.71 Aligned_cols=46 Identities=11% Similarity=0.161 Sum_probs=35.7
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....|+||||.-.|-+..--..+...+.++.+ ..+++++||....
T Consensus 164 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~ 209 (252)
T PRK14272 164 AVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMHQ 209 (252)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHH
Confidence 467789999999999988776666666666644 4778999998853
No 278
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.98 E-value=0.0019 Score=71.69 Aligned_cols=134 Identities=26% Similarity=0.236 Sum_probs=76.4
Q ss_pred ccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHH--------------------HHHHcCCcccCCc---cccCCc
Q 001077 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEI---FEISPV 1070 (1162)
Q Consensus 1014 fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLiv--------------------ILAQiG~fVPA~~---a~l~i~ 1070 (1162)
.|=+|+++.-. .+.++.|-|||++||||+||.++=+. -+|+.=+|||-+. ..++++
T Consensus 16 ~il~~ls~~i~-~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~ 94 (258)
T COG1120 16 PILDDLSFSIP-KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVY 94 (258)
T ss_pred eEEecceEEec-CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEe
Confidence 44455555432 35799999999999999999988543 2566667888763 334444
Q ss_pred cee----------eeecCCccch------------------hhcccchHHHHHH--HHHHHhcCCCCcEEEEcCCCCCCC
Q 001077 1071 DRI----------FVRMGAKDHI------------------MAGQSTFLTELSE--TALMLSSATRNSLVVLDELGRGTS 1120 (1162)
Q Consensus 1071 DrI----------fTRIGa~D~i------------------~~g~STFmvEM~E--ta~IL~~AT~~SLVIlDELGRGTs 1120 (1162)
|-+ |.+.+..|.- ..-.|- -|... +|..| |....++||||- |+
T Consensus 95 d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSG--GerQrv~iArAL--aQ~~~iLLLDEP---Ts 167 (258)
T COG1120 95 ELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSG--GERQRVLIARAL--AQETPILLLDEP---TS 167 (258)
T ss_pred ehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccCh--hHHHHHHHHHHH--hcCCCEEEeCCC---cc
Confidence 432 1111222210 000111 11111 33333 567789999996 44
Q ss_pred hhhHHHHHHHH--HH-hhcc----cCceEEEehhhhcccccceEe
Q 001077 1121 TSDGQAIAVFS--SG-FQSL----AGSQFLSTLFIKCNAVDCFQL 1158 (1162)
Q Consensus 1121 t~DG~AIA~A~--~~-~~~l----~~~~~~~th~~~~~~~~~~~~ 1158 (1162)
.-| |++.+ .+ +.++ ..++++++|-.++++--|-++
T Consensus 168 ~LD---i~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~ 209 (258)
T COG1120 168 HLD---IAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHL 209 (258)
T ss_pred ccC---HHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE
Confidence 444 33322 22 3333 356899999999887655443
No 279
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.97 E-value=0.0028 Score=70.72 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=35.8
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....++||||--.|-+..--..+.-.+.++.+ ..+++++||....
T Consensus 163 ~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~ 208 (251)
T PRK14270 163 AVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQ 208 (251)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHH
Confidence 457789999999999988777777666666654 4689999998853
No 280
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=96.97 E-value=0.003 Score=77.74 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=38.8
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....|+||||--.|=+..--..|.-.+.++.+...+++++||...
T Consensus 412 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~ 457 (501)
T PRK11288 412 SEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP 457 (501)
T ss_pred ccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 4578899999999999988888887777777666779999999984
No 281
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=96.96 E-value=0.0032 Score=75.59 Aligned_cols=112 Identities=21% Similarity=0.254 Sum_probs=82.8
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCc--------------------------------cccCCccee-
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI--------------------------------FEISPVDRI- 1073 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~--------------------------------a~l~i~DrI- 1073 (1162)
..++.|.|-|++||||+||-++ |.|-|-+. -.+++.+.|
T Consensus 34 GEV~aL~GeNGAGKSTLmKiLs--------Gv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNif 105 (500)
T COG1129 34 GEVHALLGENGAGKSTLMKILS--------GVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIF 105 (500)
T ss_pred ceEEEEecCCCCCHHHHHHHHh--------CcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhh
Confidence 4699999999999999999998 87766442 123333333
Q ss_pred ------------------------eeecCC---ccchhhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHH
Q 001077 1074 ------------------------FVRMGA---KDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQA 1126 (1162)
Q Consensus 1074 ------------------------fTRIGa---~D~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~A 1126 (1162)
+.++|. -|.....+|-=.-.|.|+|+.|.. ..-||||||-=.-=+..|--.
T Consensus 106 Lgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~--~arllIlDEPTaaLt~~E~~~ 183 (500)
T COG1129 106 LGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSF--DARVLILDEPTAALTVKETER 183 (500)
T ss_pred cccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhc--CCCEEEEcCCcccCCHHHHHH
Confidence 345665 455666677777788888888876 333999999877766667666
Q ss_pred HHHHHHHhhcccCceEEEehhh
Q 001077 1127 IAVFSSGFQSLAGSQFLSTLFI 1148 (1162)
Q Consensus 1127 IA~A~~~~~~l~~~~~~~th~~ 1148 (1162)
+-..+-.++.-.-+++.+||.+
T Consensus 184 Lf~~ir~Lk~~Gv~ii~ISHrl 205 (500)
T COG1129 184 LFDLIRRLKAQGVAIIYISHRL 205 (500)
T ss_pred HHHHHHHHHhCCCEEEEEcCcH
Confidence 6666666888888999999987
No 282
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.96 E-value=0.0029 Score=68.91 Aligned_cols=124 Identities=19% Similarity=0.291 Sum_probs=74.3
Q ss_pred ccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeee--cCC--------ccch
Q 001077 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVR--MGA--------KDHI 1083 (1162)
Q Consensus 1014 fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTR--IGa--------~D~i 1083 (1162)
++=+|+.+.-. ....+-|-|+|++||||+||.++ |.+-|-+ -++.+--+|..- +|+ .|||
T Consensus 41 ~aL~disf~i~-~Ge~vGiiG~NGaGKSTLlklia--------Gi~~Pt~-G~v~v~G~v~~li~lg~Gf~pelTGreNi 110 (249)
T COG1134 41 WALKDISFEIY-KGERVGIIGHNGAGKSTLLKLIA--------GIYKPTS-GKVKVTGKVAPLIELGAGFDPELTGRENI 110 (249)
T ss_pred EEecCceEEEe-CCCEEEEECCCCCcHHHHHHHHh--------CccCCCC-ceEEEcceEehhhhcccCCCcccchHHHH
Confidence 33445555422 23468999999999999999999 9998854 222222233211 111 2232
Q ss_pred hh-----cccc-----hHHHHHH----------------------HHHHHhcCCCCcEEEEcCC-CCCCChhhHHHHHHH
Q 001077 1084 MA-----GQST-----FLTELSE----------------------TALMLSSATRNSLVVLDEL-GRGTSTSDGQAIAVF 1130 (1162)
Q Consensus 1084 ~~-----g~ST-----FmvEM~E----------------------ta~IL~~AT~~SLVIlDEL-GRGTst~DG~AIA~A 1130 (1162)
.- |.|. .+-|+.| ++.-+.-+......||||. +-|+.++---|+..
T Consensus 111 ~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~r- 189 (249)
T COG1134 111 YLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLER- 189 (249)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHH-
Confidence 11 1111 1111111 3333445577889999994 56888887777766
Q ss_pred HHHhhcccCceEEEehhh
Q 001077 1131 SSGFQSLAGSQFLSTLFI 1148 (1162)
Q Consensus 1131 ~~~~~~l~~~~~~~th~~ 1148 (1162)
+-++.+...++++++|=+
T Consensus 190 l~e~~~~~~tiv~VSHd~ 207 (249)
T COG1134 190 LNELVEKNKTIVLVSHDL 207 (249)
T ss_pred HHHHHHcCCEEEEEECCH
Confidence 455656668899999976
No 283
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=96.96 E-value=0.02 Score=71.97 Aligned_cols=47 Identities=11% Similarity=0.146 Sum_probs=36.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~ 1151 (1162)
.....++||||--.|-+...-..|..++.++.+ ..+++++||-....
T Consensus 487 l~~p~ililDEpts~LD~~~~~~i~~~l~~~~~-~~tvI~isH~~~~~ 533 (585)
T TIGR01192 487 LKNAPILVLDEATSALDVETEARVKNAIDALRK-NRTTFIIAHRLSTV 533 (585)
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEEcChHHH
Confidence 467889999999998888777777666665533 56889999987443
No 284
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=96.96 E-value=0.0013 Score=91.00 Aligned_cols=52 Identities=17% Similarity=0.170 Sum_probs=41.0
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhh-hcccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFI-KCNAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~-~~~~~~~ 1155 (1162)
+....++||||--.|=++.--.-|--.+.++.+...+++++||.+ -|.++.+
T Consensus 2086 i~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcD 2138 (2272)
T TIGR01257 2086 IGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCT 2138 (2272)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 467899999999999998888877777777655567899999998 4544443
No 285
>PRK09183 transposase/IS protein; Provisional
Probab=96.96 E-value=0.0029 Score=71.05 Aligned_cols=102 Identities=21% Similarity=0.250 Sum_probs=57.6
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhc-CCC
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSS-ATR 1106 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~-AT~ 1106 (1162)
..++|+||+++|||+++..+|...+ +-|.-| .|.. +. .+......-..+ .....+++. ...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~--~~G~~v------------~~~~--~~-~l~~~l~~a~~~-~~~~~~~~~~~~~ 164 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV--RAGIKV------------RFTT--AA-DLLLQLSTAQRQ-GRYKTTLQRGVMA 164 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH--HcCCeE------------EEEe--HH-HHHHHHHHHHHC-CcHHHHHHHHhcC
Confidence 3588999999999999999976544 345322 1111 00 011000000000 012344443 456
Q ss_pred CcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehh
Q 001077 1107 NSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLF 1147 (1162)
Q Consensus 1107 ~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~ 1147 (1162)
..|+||||+|-..-+.++..+-+-+.........++++|++
T Consensus 165 ~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s~iiTsn~ 205 (259)
T PRK09183 165 PRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNL 205 (259)
T ss_pred CCEEEEcccccCCCChHHHHHHHHHHHHHHhcCcEEEecCC
Confidence 67999999998766667765666555533334567777665
No 286
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=96.95 E-value=0.0011 Score=54.22 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=37.4
Q ss_pred CceEEEeccCCCeEEeEEEEeecCCCCeEEEEccC-Cchhhccc
Q 001077 107 RKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD-GEDELLDL 149 (1162)
Q Consensus 107 g~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd-g~~e~l~l 149 (1162)
|..|.+.|++|..||.|+|.+.++ .+...|.|.| |..|.+.+
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~~~v~~ 43 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNTEVVPL 43 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCcEEEeH
Confidence 678999999999999999999998 7779999977 99887754
No 287
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=96.94 E-value=0.0021 Score=79.18 Aligned_cols=46 Identities=15% Similarity=0.152 Sum_probs=35.5
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....|+||||--.|=+..--..|--.+.++.+...+++++||.+.
T Consensus 419 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~ 464 (500)
T TIGR02633 419 LTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA 464 (500)
T ss_pred hhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 3567899999999998887666665555566555678999999984
No 288
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=96.94 E-value=0.0013 Score=81.16 Aligned_cols=46 Identities=4% Similarity=0.078 Sum_probs=34.8
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....++||||--.|=+..--..|.-.+.++.+...+++++||-..
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~ 206 (510)
T PRK09700 161 MLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA 206 (510)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 4677899999998888776666666656666555567999999874
No 289
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=96.93 E-value=0.0012 Score=81.36 Aligned_cols=46 Identities=9% Similarity=0.153 Sum_probs=35.8
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....|+||||--.|=++.--..+...+.++.+...+++++||-..
T Consensus 157 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~ 202 (501)
T PRK10762 157 SFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK 202 (501)
T ss_pred hcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4678899999998888877776666666666555668999999874
No 290
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=96.93 E-value=0.0033 Score=77.57 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=37.0
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....|+||||--.|=+..--..|.-.+.++.+...+++++||-..
T Consensus 425 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~ 470 (510)
T PRK09700 425 CCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP 470 (510)
T ss_pred hcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 4567899999999999988777777767666555678999999974
No 291
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.92 E-value=0.0031 Score=79.87 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=34.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh-cccccceE
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK-CNAVDCFQ 1157 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~-~~~~~~~~ 1157 (1162)
+....++||||--.|=+..---.|.-++ .++..+++++||... +..+.+.-
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l---~~~~~tvi~vSHd~~~~~~~~d~i 507 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELL---DSYQGTVLLVSHDRQFVDNTVTEC 507 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHH---HhCCCeEEEEECCHHHHHHhcCEE
Confidence 3577899999998887766544444444 344678999999873 44444433
No 292
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.92 E-value=0.0036 Score=70.20 Aligned_cols=46 Identities=11% Similarity=0.089 Sum_probs=35.9
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....++||||.-.|-+..--..|.-.+.++.+ ..+++++||....
T Consensus 166 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~ 211 (259)
T PRK14260 166 AIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQ 211 (259)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH
Confidence 467789999999999988776666666666654 4689999999843
No 293
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=96.92 E-value=0.003 Score=78.67 Aligned_cols=43 Identities=16% Similarity=0.109 Sum_probs=34.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....|+||||--.|-++.--..|.-.+.++ ..+++++||...
T Consensus 459 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~~viivsHd~~ 501 (552)
T TIGR03719 459 KSGGNVLLLDEPTNDLDVETLRALEEALLEF---AGCAVVISHDRW 501 (552)
T ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC---CCeEEEEeCCHH
Confidence 5778899999999998877777776655544 458999999984
No 294
>PRK13409 putative ATPase RIL; Provisional
Probab=96.92 E-value=0.0025 Score=79.66 Aligned_cols=47 Identities=15% Similarity=0.077 Sum_probs=38.8
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~ 1150 (1162)
+....|+||||--.|=+...-..|.-.+.++.. ...+++++||-...
T Consensus 469 ~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~ 516 (590)
T PRK13409 469 SRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYM 516 (590)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 578889999999999998888888887777654 36789999999854
No 295
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.90 E-value=0.0011 Score=75.76 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=35.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~ 1149 (1162)
+...+|+||||.-.|-++..-..+.-.+.++.+ ...+++++||...
T Consensus 166 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~ 212 (289)
T PRK13645 166 AMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD 212 (289)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 457789999999999988777666655655544 3568999999874
No 296
>PLN03211 ABC transporter G-25; Provisional
Probab=96.89 E-value=0.0018 Score=82.02 Aligned_cols=46 Identities=15% Similarity=0.123 Sum_probs=36.4
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
++..+++||||--.|=++.--..|...+.++.+...+++++||-..
T Consensus 222 ~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~ 267 (659)
T PLN03211 222 LINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPS 267 (659)
T ss_pred HhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Confidence 3567899999999998887777777666666655678999999864
No 297
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.89 E-value=0.0035 Score=77.27 Aligned_cols=52 Identities=12% Similarity=0.067 Sum_probs=38.4
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc-ccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC-NAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~-~~~~~ 1155 (1162)
+....++||||--.|=+..--..|--.+..+.+...+++++||.+.. ..+.+
T Consensus 421 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d 473 (506)
T PRK13549 421 LLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSD 473 (506)
T ss_pred hhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCC
Confidence 45678999999999988877766665566565556789999999843 33443
No 298
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=96.87 E-value=0.00096 Score=81.86 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=37.6
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccC-ceEEEehhhhcc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAG-SQFLSTLFIKCN 1151 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~-~~~~~th~~~~~ 1151 (1162)
+....++||||--.|=+..--..|.-.+.++.+-.. +++++||.....
T Consensus 417 ~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~ 465 (490)
T PRK10938 417 VKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDA 465 (490)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhh
Confidence 467889999999999888888777777776655433 589999998544
No 299
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=96.87 E-value=0.0015 Score=56.38 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=33.4
Q ss_pred ccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEccC
Q 001077 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD 141 (1162)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd 141 (1162)
-+|..|.|+|+.++.||.|+|+.++. .++|.|.|++
T Consensus 4 ~~G~~Ve~~~~~~~~W~~a~V~~~~~-~~~~~V~~~~ 39 (61)
T smart00743 4 KKGDRVEVFSKEEDSWWEAVVTKVLG-DGKYLVRYLT 39 (61)
T ss_pred CCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEECC
Confidence 48999999999999999999999998 6679999987
No 300
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.86 E-value=0.0031 Score=78.03 Aligned_cols=46 Identities=9% Similarity=0.038 Sum_probs=36.9
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~ 1149 (1162)
+....|+||||--.|=++.--..+.-.+.++.+ ...+++++||-..
T Consensus 443 ~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~ 489 (520)
T TIGR03269 443 IKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD 489 (520)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH
Confidence 467889999999999988888777777766644 4668999999984
No 301
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.84 E-value=0.0052 Score=60.90 Aligned_cols=106 Identities=20% Similarity=0.197 Sum_probs=56.3
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHH--HHHHHHHHhcC
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTE--LSETALMLSSA 1104 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvE--M~Eta~IL~~A 1104 (1162)
.+.++|+||.+.||||+++.++-... +-+..| ++. ...+......-....+ .......+...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF--RPGAPF------------LYL--NASDLLEGLVVAELFGHFLVRLLFELAEK 82 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCe------------EEE--ehhhhhhhhHHHHHhhhhhHhHHHHhhcc
Confidence 35799999999999999999986554 111111 111 1111111111111111 11222334445
Q ss_pred CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-----ccCceEEEehhhh
Q 001077 1105 TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-----LAGSQFLSTLFIK 1149 (1162)
Q Consensus 1105 T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-----l~~~~~~~th~~~ 1149 (1162)
....+++|||+.+. .......+...+..+.. ....++++|+...
T Consensus 83 ~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 83 AKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred CCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 67899999999997 22333444444444432 2345666666543
No 302
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=96.83 E-value=0.0051 Score=69.56 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=37.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....++||||--.|-+...-..+.-.+.++.+ ..+++++||....
T Consensus 183 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~ 228 (271)
T PRK14238 183 AIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQ 228 (271)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHH
Confidence 457789999999999998888777777776655 5789999998753
No 303
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.83 E-value=0.0022 Score=79.25 Aligned_cols=47 Identities=13% Similarity=0.009 Sum_probs=33.8
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~ 1150 (1162)
+....|+||||--.|=+..--..|.-.+.++.+ ...+++++||-...
T Consensus 184 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~ 231 (520)
T TIGR03269 184 AKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231 (520)
T ss_pred hcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 457889999999888776666655555555533 45689999998743
No 304
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.83 E-value=0.0029 Score=78.84 Aligned_cols=119 Identities=17% Similarity=0.117 Sum_probs=67.8
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHH-------HH---HcCCcccCCc----cccCCcceee------------------
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVI-------LA---QVGADVPAEI----FEISPVDRIF------------------ 1074 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivI-------LA---QiG~fVPA~~----a~l~i~DrIf------------------ 1074 (1162)
+.++.|+|||++||||+||.++=+.- +. .+ .|||-+. ..+++.+.|.
T Consensus 350 Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i-~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~ 428 (556)
T PRK11819 350 GGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKL-AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAY 428 (556)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEE-EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHH
Confidence 46899999999999999999973210 00 11 2555432 1123333321
Q ss_pred -eecCCcc-chhhcccchHHHHHH-HHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1075 -VRMGAKD-HIMAGQSTFLTELSE-TALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1075 -TRIGa~D-~i~~g~STFmvEM~E-ta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
.++|-.+ .+..--+++..-+.+ ++-+..-+....|+||||--.|=++.--..|.-.+.++ ..+++++||...
T Consensus 429 l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vtHd~~ 503 (556)
T PRK11819 429 VGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF---PGCAVVISHDRW 503 (556)
T ss_pred HHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH
Confidence 1122111 011111222222222 22222235788999999999998877777766655544 468999999874
No 305
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.82 E-value=0.0031 Score=70.81 Aligned_cols=46 Identities=9% Similarity=0.120 Sum_probs=33.7
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~ 1149 (1162)
+....++||||--.|-+..--..+.-.+.++.. ...+++++||...
T Consensus 166 ~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~ 212 (261)
T PRK14258 166 AVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH 212 (261)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 356799999999999886665555555555533 3568899999985
No 306
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.81 E-value=0.0032 Score=78.10 Aligned_cols=43 Identities=9% Similarity=0.128 Sum_probs=32.6
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....++||||--.|=++.--..|...+. ++..+++++||...
T Consensus 454 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~---~~~~tvi~vsHd~~ 496 (530)
T PRK15064 454 MQKPNVLVMDEPTNHMDMESIESLNMALE---KYEGTLIFVSHDRE 496 (530)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHH---HCCCEEEEEeCCHH
Confidence 46788999999988887776655555444 44568999999984
No 307
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.80 E-value=0.0053 Score=75.41 Aligned_cols=53 Identities=13% Similarity=0.094 Sum_probs=39.5
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh-cccccce
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK-CNAVDCF 1156 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~-~~~~~~~ 1156 (1162)
+....++||||--.|=++.--..|--.+.++.+...+++++||... +..+.+.
T Consensus 407 ~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~ 460 (491)
T PRK10982 407 LTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDR 460 (491)
T ss_pred hcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCE
Confidence 4677899999999998877776666666666666778999999984 3344443
No 308
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.79 E-value=0.0082 Score=76.10 Aligned_cols=120 Identities=21% Similarity=0.246 Sum_probs=74.6
Q ss_pred ccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCc-cc-----------------cCCcce---
Q 001077 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-FE-----------------ISPVDR--- 1072 (1162)
Q Consensus 1014 fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~-a~-----------------l~i~Dr--- 1072 (1162)
.|=+|+.+.-. .+..+.|+|+||+||||++|.+. |.|.|-+. -. ++.+..
T Consensus 487 ~vL~~isL~I~-~Ge~vaIvG~SGsGKSTL~KLL~--------gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~ 557 (709)
T COG2274 487 PVLEDLSLEIP-PGEKVAIVGRSGSGKSTLLKLLL--------GLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPF 557 (709)
T ss_pred chhhceeEEeC-CCCEEEEECCCCCCHHHHHHHHh--------cCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccch
Confidence 45566666532 34679999999999999999998 99998543 11 111111
Q ss_pred eeeecCCccchhhcc---------------------------------------cchHHHHHHHHHHHhcCCCCcEEEEc
Q 001077 1073 IFVRMGAKDHIMAGQ---------------------------------------STFLTELSETALMLSSATRNSLVVLD 1113 (1162)
Q Consensus 1073 IfTRIGa~D~i~~g~---------------------------------------STFmvEM~Eta~IL~~AT~~SLVIlD 1113 (1162)
+|++ --.|||.-|. |.=---...+|+.| ..+..++|||
T Consensus 558 Lf~g-SI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaL--l~~P~ILlLD 634 (709)
T COG2274 558 LFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARAL--LSKPKILLLD 634 (709)
T ss_pred hhcC-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHh--ccCCCEEEEe
Confidence 1111 0012222221 11111122233333 3678899999
Q ss_pred CCCCCCChhhHHHHHHHHHHhhccc--CceEEEehhh
Q 001077 1114 ELGRGTSTSDGQAIAVFSSGFQSLA--GSQFLSTLFI 1148 (1162)
Q Consensus 1114 ELGRGTst~DG~AIA~A~~~~~~l~--~~~~~~th~~ 1148 (1162)
| -||.-|-..=+.-...+.+.. ++++++||-.
T Consensus 635 E---aTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl 668 (709)
T COG2274 635 E---ATSALDPETEAIILQNLLQILQGRTVIIIAHRL 668 (709)
T ss_pred C---cccccCHhHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 9 688888887777666677776 8899999976
No 309
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.78 E-value=0.0027 Score=73.12 Aligned_cols=125 Identities=22% Similarity=0.316 Sum_probs=70.7
Q ss_pred cccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCc---------cccCCcce----------eee
Q 001077 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI---------FEISPVDR----------IFV 1075 (1162)
Q Consensus 1015 VPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~---------a~l~i~Dr----------IfT 1075 (1162)
+=+|+.|.-. ...+++|.|||++||||+||.|| |.--|-+. -.+++-+| +|-
T Consensus 18 ~l~~i~l~i~-~Gef~vllGPSGcGKSTlLr~IA--------GLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyP 88 (338)
T COG3839 18 VLKDVNLDIE-DGEFVVLLGPSGCGKSTLLRMIA--------GLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYP 88 (338)
T ss_pred eeecceEEEc-CCCEEEEECCCCCCHHHHHHHHh--------CCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccC
Confidence 4445555422 34699999999999999999999 88766543 12333333 455
Q ss_pred ecCCccchhhcccc-------hHHHHHHHHHHH------hc-------------------CCCCcEEEEcCCCCCCChhh
Q 001077 1076 RMGAKDHIMAGQST-------FLTELSETALML------SS-------------------ATRNSLVVLDELGRGTSTSD 1123 (1162)
Q Consensus 1076 RIGa~D~i~~g~ST-------FmvEM~Eta~IL------~~-------------------AT~~SLVIlDELGRGTst~D 1123 (1162)
.|--.|||.=|.-. =-....|++.+| +. ....+++||||-=.-=+..=
T Consensus 89 hmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~l 168 (338)
T COG3839 89 HMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKL 168 (338)
T ss_pred CCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHH
Confidence 66666777644322 112223444443 21 14567999999643222222
Q ss_pred HHHHHHHHHHhh-cccCceEEEehhh
Q 001077 1124 GQAIAVFSSGFQ-SLAGSQFLSTLFI 1148 (1162)
Q Consensus 1124 G~AIA~A~~~~~-~l~~~~~~~th~~ 1148 (1162)
-..+-.-+..++ ++..+++..||--
T Consensus 169 R~~mr~ei~~lh~~l~~T~IYVTHDq 194 (338)
T COG3839 169 RVLMRSEIKKLHERLGTTTIYVTHDQ 194 (338)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEcCCH
Confidence 222222233322 3566788888854
No 310
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.75 E-value=0.0021 Score=78.93 Aligned_cols=61 Identities=10% Similarity=0.072 Sum_probs=41.9
Q ss_pred cchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1088 STFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1088 STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
|.=+.-...+|..| +....++||||--.|=+..--.-|...+.++.....+++++||-...
T Consensus 136 SgGq~qrv~lA~al--~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~ 196 (491)
T PRK10982 136 SVSQMQMIEIAKAF--SYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEE 196 (491)
T ss_pred CHHHHHHHHHHHHH--HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 33333333344444 45778999999999988877766666566665556789999998753
No 311
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=96.75 E-value=0.0063 Score=74.91 Aligned_cols=46 Identities=9% Similarity=0.130 Sum_probs=36.8
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....++||||--.|-+..-...|.-.+.++.+...+++++||-..
T Consensus 157 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~ 202 (500)
T TIGR02633 157 NKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN 202 (500)
T ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH
Confidence 4567899999999999888777777766666655668999999874
No 312
>PLN03073 ABC transporter F family; Provisional
Probab=96.73 E-value=0.0038 Score=79.72 Aligned_cols=43 Identities=14% Similarity=0.073 Sum_probs=33.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....|+||||.-.| .|-.++.|....+.++..+++++||-..
T Consensus 360 ~~~p~lLlLDEPt~~---LD~~~~~~l~~~L~~~~~tviivsHd~~ 402 (718)
T PLN03073 360 FIEPDLLLLDEPTNH---LDLHAVLWLETYLLKWPKTFIVVSHARE 402 (718)
T ss_pred hcCCCEEEEECCCCC---CCHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 356789999998554 5666777766667778889999999874
No 313
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=96.72 E-value=0.0029 Score=87.71 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=36.9
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~ 1151 (1162)
+....++||||--.|=++..-..|.-.+.++.+ ..+++++||++..+
T Consensus 1077 i~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~-g~TIIltTHdmdea 1123 (2272)
T TIGR01257 1077 VGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRS-GRTIIMSTHHMDEA 1123 (2272)
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhC-CCEEEEEECCHHHH
Confidence 456789999999999888887777666666643 66899999998543
No 314
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=96.72 E-value=0.005 Score=75.80 Aligned_cols=47 Identities=23% Similarity=0.254 Sum_probs=37.0
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....|+||||--.|=++.--..+.-.+..+.....+++++||....
T Consensus 411 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~ 457 (501)
T PRK10762 411 MTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPE 457 (501)
T ss_pred hhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 45678999999999988887777777666665555689999999753
No 315
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=96.70 E-value=0.0027 Score=78.23 Aligned_cols=46 Identities=9% Similarity=0.078 Sum_probs=34.9
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....++||||--.|=+..--..|.-.+.++.+...+++++||...
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~ 201 (501)
T PRK11288 156 ARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME 201 (501)
T ss_pred HhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 4677899999999988877666665555555444568999999874
No 316
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=96.70 E-value=0.0022 Score=76.21 Aligned_cols=41 Identities=20% Similarity=0.158 Sum_probs=31.7
Q ss_pred CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccC-ceEEEehhh
Q 001077 1105 TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAG-SQFLSTLFI 1148 (1162)
Q Consensus 1105 T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~-~~~~~th~~ 1148 (1162)
-..+|.||||- |+..|=.||+|--..+.+... .++++.|.-
T Consensus 238 ~kP~LLLLDEP---tnhLDleA~~wLee~L~k~d~~~lVi~sh~Q 279 (614)
T KOG0927|consen 238 QKPDLLLLDEP---TNHLDLEAIVWLEEYLAKYDRIILVIVSHSQ 279 (614)
T ss_pred cCCCEEEecCC---ccCCCHHHHHHHHHHHHhccCceEEEEecch
Confidence 46889999995 667788899995444666776 588888865
No 317
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.67 E-value=0.0032 Score=65.63 Aligned_cols=117 Identities=21% Similarity=0.276 Sum_probs=70.5
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCc------ccCCcc------cc----CCcceeeeecCC-----------
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD------VPAEIF------EI----SPVDRIFVRMGA----------- 1079 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~f------VPA~~a------~l----~i~DrIfTRIGa----------- 1079 (1162)
.++.+|||-|++||||+|-.+|...=.--+|-- +=+..+ ++ -+-++.|-|--.
T Consensus 37 apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlRAEs~yn~as~~De~ 116 (233)
T COG3910 37 APITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLRAESFYNVASYLDEA 116 (233)
T ss_pred CceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEehhHHHHHHHHHHhh
Confidence 578999999999999999999855422111100 000000 00 011333333211
Q ss_pred ----------ccchhhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1080 ----------KDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1080 ----------~D~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
-+....|.|-| +-+.+..+..-+-||||--.|-|+.--++|+.-+-.+.+-..-++++||---
T Consensus 117 ~~e~~~~~~sLh~~SHGEsf~-------~i~~~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 117 DGEANYGGRSLHHMSHGESFL-------AIFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred hhhcccCCcchhhhccchHHH-------HHHHHHhccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 12333343322 3455667899999999999999999998887533335555556888999754
Q ss_pred c
Q 001077 1150 C 1150 (1162)
Q Consensus 1150 ~ 1150 (1162)
+
T Consensus 190 L 190 (233)
T COG3910 190 L 190 (233)
T ss_pred h
Confidence 3
No 318
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=96.67 E-value=0.0052 Score=71.49 Aligned_cols=49 Identities=12% Similarity=0.034 Sum_probs=38.6
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKCNA 1152 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~~~ 1152 (1162)
+....|+|+||--.|-+..--..|.-.+.++.+ ...+++++||.+....
T Consensus 177 ~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~ 226 (331)
T PRK15079 177 ILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVK 226 (331)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 567899999999999888777777666666654 4678999999986553
No 319
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.66 E-value=0.0011 Score=67.74 Aligned_cols=135 Identities=24% Similarity=0.244 Sum_probs=74.8
Q ss_pred ccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHH---------------------------HHHHcCCcccCC---
Q 001077 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV---------------------------ILAQVGADVPAE--- 1063 (1162)
Q Consensus 1014 fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLiv---------------------------ILAQiG~fVPA~--- 1063 (1162)
-+=|.+.|.-. .+.++.||||.++|||||||+||.+. +.||--...|-.
T Consensus 17 ~il~~isl~v~-~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeD 95 (223)
T COG4619 17 KILNNISLSVR-AGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVED 95 (223)
T ss_pred eeecceeeeec-CCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhh
Confidence 34444444321 23579999999999999999999876 333332222210
Q ss_pred ccccCC------cce-----eeeecCCccchhhcccchH--HHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHH
Q 001077 1064 IFEISP------VDR-----IFVRMGAKDHIMAGQSTFL--TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVF 1130 (1162)
Q Consensus 1064 ~a~l~i------~Dr-----IfTRIGa~D~i~~g~STFm--vEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A 1130 (1162)
...+|. +|+ ...|.+-.+.++...=|=| .|-..+|-|-+--+-...+||||.-.--+...--+|---
T Consensus 96 NlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~m 175 (223)
T COG4619 96 NLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEM 175 (223)
T ss_pred ccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHH
Confidence 011111 111 2345555555544322211 244445544444566779999998665555555555544
Q ss_pred HHH-hhcccCceEEEehhhh
Q 001077 1131 SSG-FQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1131 ~~~-~~~l~~~~~~~th~~~ 1149 (1162)
+-. +.+-.-+++-+||-..
T Consensus 176 i~~~v~~q~vAv~WiTHd~d 195 (223)
T COG4619 176 IHRYVREQNVAVLWITHDKD 195 (223)
T ss_pred HHHHhhhhceEEEEEecChH
Confidence 444 3355667778999763
No 320
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.66 E-value=0.0034 Score=73.00 Aligned_cols=46 Identities=13% Similarity=0.067 Sum_probs=37.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....++||||--.|-++.-+..|.-.+..+.+ ..+++++||.+..
T Consensus 241 ~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~ 286 (329)
T PRK14257 241 ALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQ 286 (329)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH
Confidence 467789999999999998888777777766655 4789999998843
No 321
>PRK06526 transposase; Provisional
Probab=96.65 E-value=0.0075 Score=67.47 Aligned_cols=101 Identities=18% Similarity=0.187 Sum_probs=59.2
Q ss_pred eEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCCCCc
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNS 1108 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~S 1108 (1162)
-++|+||.|.|||+++..+|.-.+ +-|.-|=. .-...++.++.... .. .+. ...++......
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~--~~g~~v~f-----~t~~~l~~~l~~~~--~~--~~~-------~~~l~~l~~~d 161 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRAC--QAGHRVLF-----ATAAQWVARLAAAH--HA--GRL-------QAELVKLGRYP 161 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHH--HCCCchhh-----hhHHHHHHHHHHHH--hc--CcH-------HHHHHHhccCC
Confidence 489999999999999999885543 45643311 11111222221110 00 111 22334445568
Q ss_pred EEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehh
Q 001077 1109 LVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLF 1147 (1162)
Q Consensus 1109 LVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~ 1147 (1162)
||||||+|.--.+.++..+-+-+.........++++|+.
T Consensus 162 lLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~ 200 (254)
T PRK06526 162 LLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNK 200 (254)
T ss_pred EEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCC
Confidence 999999998766667766666665433334567777765
No 322
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.63 E-value=0.0085 Score=67.11 Aligned_cols=121 Identities=25% Similarity=0.291 Sum_probs=72.4
Q ss_pred ceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCc-------------------cccCCcce---eee
Q 001077 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-------------------FEISPVDR---IFV 1075 (1162)
Q Consensus 1018 Di~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~-------------------a~l~i~Dr---IfT 1075 (1162)
|+.+.-. ...++.|+|||++||||+||.|| |.-=|... ..+|.+=+ +|-
T Consensus 20 di~l~i~-~Ge~vaLlGpSGaGKsTlLRiIA--------GLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 20 DISLDIK-SGELVALLGPSGAGKSTLLRIIA--------GLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred cceeeec-CCcEEEEECCCCCcHHHHHHHHh--------CcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 4544422 34689999999999999999998 76555432 22222211 455
Q ss_pred ecCCccchhhcc------------cchHHHHHH----------------------HHHHHhcCCCCcEEEEcCCCCCCCh
Q 001077 1076 RMGAKDHIMAGQ------------STFLTELSE----------------------TALMLSSATRNSLVVLDELGRGTST 1121 (1162)
Q Consensus 1076 RIGa~D~i~~g~------------STFmvEM~E----------------------ta~IL~~AT~~SLVIlDELGRGTst 1121 (1162)
.|--.|||.=|. .+=..|+.+ +|-.-.-|-...+.||||-.+.-++
T Consensus 91 HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa 170 (345)
T COG1118 91 HMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDA 170 (345)
T ss_pred cchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhH
Confidence 666677777665 111222222 1111223678889999999987766
Q ss_pred hhHHHH-HHHHHHhhcccCceEEEehh
Q 001077 1122 SDGQAI-AVFSSGFQSLAGSQFLSTLF 1147 (1162)
Q Consensus 1122 ~DG~AI-A~A~~~~~~l~~~~~~~th~ 1147 (1162)
.=-.-+ .|--.-...+..++++.||=
T Consensus 171 ~vr~~lr~wLr~~~~~~~~ttvfVTHD 197 (345)
T COG1118 171 KVRKELRRWLRKLHDRLGVTTVFVTHD 197 (345)
T ss_pred HHHHHHHHHHHHHHHhhCceEEEEeCC
Confidence 555544 23222234457777778874
No 323
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=96.63 E-value=0.004 Score=79.01 Aligned_cols=66 Identities=12% Similarity=0.056 Sum_probs=45.7
Q ss_pred cchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccc
Q 001077 1088 STFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDC 1155 (1162)
Q Consensus 1088 STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~ 1155 (1162)
|+-+.-...++..| +.+..++|+||--.|-+..--..+.-.+.++.+...+++++||...+....+
T Consensus 146 S~Gq~qrv~LAraL--~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d 211 (648)
T PRK10535 146 SGGQQQRVSIARAL--MNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAE 211 (648)
T ss_pred CHHHHHHHHHHHHH--hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCC
Confidence 33333333344444 3567899999999999887777776666666555678999999997655433
No 324
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=96.63 E-value=0.0064 Score=75.42 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=37.5
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~ 1150 (1162)
+....++||||--.|-++.--..|.-.+.++.+ ...+++++||-...
T Consensus 441 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~ 488 (529)
T PRK15134 441 ILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHV 488 (529)
T ss_pred hCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH
Confidence 467899999999999998888777776766654 35689999999853
No 325
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=96.62 E-value=0.0028 Score=73.54 Aligned_cols=46 Identities=13% Similarity=0.029 Sum_probs=35.8
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~ 1149 (1162)
+....++||||--.|-++.--..|...+.++.+ ...+++++||...
T Consensus 116 ~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~ 162 (325)
T TIGR01187 116 VFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE 162 (325)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 467889999999999888776666666666543 4678999999885
No 326
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.60 E-value=0.0037 Score=76.67 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=34.0
Q ss_pred CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEeh
Q 001077 1105 TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTL 1146 (1162)
Q Consensus 1105 T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th 1146 (1162)
.+..|.||||- |+.-|--+|+|--.-+.....++++++|
T Consensus 170 ~~pDlLLLDEP---TNHLD~~~i~WLe~~L~~~~gtviiVSH 208 (530)
T COG0488 170 EEPDLLLLDEP---TNHLDLESIEWLEDYLKRYPGTVIVVSH 208 (530)
T ss_pred cCCCEEEEcCC---CcccCHHHHHHHHHHHHhCCCcEEEEeC
Confidence 56789999995 9999999999966557788889999999
No 327
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.60 E-value=0.0072 Score=75.98 Aligned_cols=52 Identities=8% Similarity=0.043 Sum_probs=38.4
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccce
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDCF 1156 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~~ 1156 (1162)
..+..++|+||.-.+-++..-..|.-.+..+. ...+++++||-.......+-
T Consensus 487 l~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~~~~~~D~ 538 (588)
T PRK13657 487 LKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLSTVRNADR 538 (588)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHHHHHhCCE
Confidence 45888999999999988877777766665442 25689999999865544443
No 328
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=96.59 E-value=0.01 Score=64.62 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=38.8
Q ss_pred HhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccceEeeec
Q 001077 1101 LSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDCFQLTIT 1161 (1162)
Q Consensus 1101 L~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~~~~~~~ 1161 (1162)
+....+..++||||+-.+-+..--..|+..+.++..- .=+|++||-....+..+..+.|+
T Consensus 153 ~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~-~Q~ii~Th~~~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 153 LQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQ-SQFIITTHNPEMFEDADKLIGVT 212 (220)
T ss_dssp HHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTT-SEEEEE-S-HHHHTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc
Confidence 4466788999999998887776666777666654322 45888999988777777666654
No 329
>PLN03073 ABC transporter F family; Provisional
Probab=96.59 E-value=0.0057 Score=78.15 Aligned_cols=43 Identities=12% Similarity=0.066 Sum_probs=31.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....++||||--.|-+..--..|..++. +...+++++||-..
T Consensus 643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~---~~~gtvIivSHd~~ 685 (718)
T PLN03073 643 FKKPHILLLDEPSNHLDLDAVEALIQGLV---LFQGGVLMVSHDEH 685 (718)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHH---HcCCEEEEEECCHH
Confidence 56788999999988887765444444333 33568999999774
No 330
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.58 E-value=0.0065 Score=68.48 Aligned_cols=99 Identities=18% Similarity=0.147 Sum_probs=54.8
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCc------cccCCcc---------------eeeeecCCccchhhc
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI------FEISPVD---------------RIFVRMGAKDHIMAG 1086 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~------a~l~i~D---------------rIfTRIGa~D~i~~g 1086 (1162)
.-++|.|||++||||+||.++ |..-|-.. -.+..+| .++.|+..-|+..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~--------~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~ 183 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLA--------RILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKA 183 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHh--------CccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHH
Confidence 458999999999999999998 55544321 1222222 123333333322221
Q ss_pred ccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1087 QSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1087 ~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
. -|.. ++. +-...++|+||.|+. . ...++.....-..+++++||-..+
T Consensus 184 ~-----~~~~---~i~-~~~P~villDE~~~~---e----~~~~l~~~~~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 184 E-----GMMM---LIR-SMSPDVIVVDEIGRE---E----DVEALLEALHAGVSIIATAHGRDV 231 (270)
T ss_pred H-----HHHH---HHH-hCCCCEEEEeCCCcH---H----HHHHHHHHHhCCCEEEEEechhHH
Confidence 1 1221 122 247789999998753 1 122233322346678999996554
No 331
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=96.50 E-value=0.014 Score=67.79 Aligned_cols=52 Identities=15% Similarity=0.034 Sum_probs=38.8
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhccc-ccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKCNA-VDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~~~-~~~ 1155 (1162)
+....|+|+||--.|-+..--..|.-.+.++.+ ...+++++||-+.... +.+
T Consensus 170 ~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~ad 223 (327)
T PRK11308 170 MLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIAD 223 (327)
T ss_pred HcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 467789999999988887766666666666654 4678999999986553 444
No 332
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=96.50 E-value=0.0066 Score=75.28 Aligned_cols=46 Identities=22% Similarity=0.161 Sum_probs=35.4
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~ 1149 (1162)
++...++||||--.|=++..-..|.-.+.++.. ...+++++||...
T Consensus 172 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~ 218 (529)
T PRK15134 172 LTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS 218 (529)
T ss_pred hcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH
Confidence 467889999999888887777766666665543 3568999999984
No 333
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.48 E-value=0.011 Score=60.07 Aligned_cols=23 Identities=43% Similarity=0.687 Sum_probs=20.3
Q ss_pred eEEEEccCCCChhHHHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
+++|+|||++||||++++++-..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 37899999999999999997655
No 334
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.48 E-value=0.016 Score=72.54 Aligned_cols=46 Identities=9% Similarity=0.071 Sum_probs=33.8
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+.+..++||||.-.|=++..-..|.-.+..+. ...+++++||....
T Consensus 467 l~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~ 512 (569)
T PRK10789 467 LLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSA 512 (569)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhH
Confidence 46788999999888877776666666555443 35678999998843
No 335
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.47 E-value=0.017 Score=75.30 Aligned_cols=73 Identities=15% Similarity=0.061 Sum_probs=53.5
Q ss_pred ccchHHHHHHHHHHHhc-CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccceEee
Q 001077 1087 QSTFLTELSETALMLSS-ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDCFQLT 1159 (1162)
Q Consensus 1087 ~STFmvEM~Eta~IL~~-AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~~~~~ 1159 (1162)
.|.=+.-...++..|-. .+...|+||||.-.|-+..+-..|.-.+..+.+...+++++||........++-+.
T Consensus 829 LSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~ 902 (924)
T TIGR00630 829 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIID 902 (924)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEE
Confidence 34444444555666654 24568999999999999999998888787777677899999998865555555443
No 336
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.46 E-value=0.0014 Score=68.60 Aligned_cols=115 Identities=23% Similarity=0.267 Sum_probs=60.6
Q ss_pred EEEEccCCCChhHHHHHHHHHHHHHHcCC-----cccC---Ccccc--CC------cceeeeecCCccchhhcccchHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVCLAVILAQVGA-----DVPA---EIFEI--SP------VDRIFVRMGAKDHIMAGQSTFLTE 1093 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaLivILAQiG~-----fVPA---~~a~l--~i------~DrIfTRIGa~D~i~~g~STFmvE 1093 (1162)
++|||+-+.||||+++-++ -.|...|+ |.|- ..-+. -+ -..++++........-|.=.|..|
T Consensus 2 i~iTG~pG~GKTTll~k~i--~~l~~~~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~e 79 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVI--EELKKKGLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDLE 79 (168)
T ss_dssp EEEES-TTSSHHHHHHHHH--HHHHHTCGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-HH
T ss_pred EEEECcCCCCHHHHHHHHH--HHhhccCCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcHH
Confidence 6899999999999998855 33322233 3221 22111 11 133556665444555566566655
Q ss_pred HHH-H-HHHHhcC-CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1094 LSE-T-ALMLSSA-TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1094 M~E-t-a~IL~~A-T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
--| + ..+|++| +..+|+||||+|+==-...++ ..++..+.. ....++.|-+..
T Consensus 80 ~fe~~~~~~L~~~~~~~~liviDEIG~mEl~~~~F--~~~v~~~l~-s~~~vi~vv~~~ 135 (168)
T PF03266_consen 80 SFEEIGLPALRNALSSSDLIVIDEIGKMELKSPGF--REAVEKLLD-SNKPVIGVVHKR 135 (168)
T ss_dssp HHHCCCCCCCHHHHHCCHEEEE---STTCCC-CHH--HHHHHHHHC-TTSEEEEE--SS
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeccchhhhcCHHH--HHHHHHHHc-CCCcEEEEEecC
Confidence 533 3 2456654 777899999999965555554 355555555 445566655544
No 337
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.45 E-value=0.047 Score=68.03 Aligned_cols=48 Identities=21% Similarity=0.066 Sum_probs=33.4
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~ 1151 (1162)
..+..++||||--.|-+...-..|..++..+.....+++++||.....
T Consensus 470 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~ 517 (544)
T TIGR01842 470 YGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLL 517 (544)
T ss_pred hcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHH
Confidence 357789999998777776655556555554433346889999987543
No 338
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.44 E-value=0.0067 Score=66.95 Aligned_cols=39 Identities=26% Similarity=0.263 Sum_probs=28.0
Q ss_pred CcceEEEEccCCCChhHHHHHHHHHHHH-HHcCCcccCCc
Q 001077 1026 NASFILLTGPNMGGKSTLLRQVCLAVIL-AQVGADVPAEI 1064 (1162)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivIL-AQiG~fVPA~~ 1064 (1162)
..++++|+||+++||||+..|++.-.+- ..-++||-.+.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 3578999999999999999999765432 22335555443
No 339
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.44 E-value=0.017 Score=62.84 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=38.9
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFI 1148 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~ 1148 (1162)
|....|+++||--.|-++.--..|..-|.++++ +..++++.||-.
T Consensus 161 aldPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl 206 (263)
T COG1127 161 ALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL 206 (263)
T ss_pred hcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh
Confidence 577899999999999999888888887887655 888899999987
No 340
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.44 E-value=0.0027 Score=54.86 Aligned_cols=34 Identities=35% Similarity=0.514 Sum_probs=25.2
Q ss_pred cceecCCCCCcceEEEEccCCCChhHHHHHHHHHHH
Q 001077 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI 1052 (1162)
Q Consensus 1017 NDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivI 1052 (1162)
-++.++.. ..+.+|||||++||||+|-.+..+.+
T Consensus 15 ~~~~~~~~--g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 15 ETIDFDPR--GDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred eEEeecCC--CcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 44555431 23799999999999999998876543
No 341
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=96.44 E-value=0.004 Score=60.08 Aligned_cols=43 Identities=33% Similarity=0.518 Sum_probs=34.5
Q ss_pred CccccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEccCCchh
Q 001077 102 GEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDE 145 (1162)
Q Consensus 102 ~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e 145 (1162)
|.++||.||-..|-+++-||.|+|+. +....+++|..|||.+-
T Consensus 1 ~~~~iG~rV~AkWS~n~yyY~G~I~~-~~~~~kykv~FdDG~~~ 43 (122)
T PF09038_consen 1 GSSFIGLRVFAKWSDNGYYYPGKITS-DKGKNKYKVLFDDGYEC 43 (122)
T ss_dssp ---STT-EEEEESSTTSEEEEEEEEE-EETTTEEEEEETTS-EE
T ss_pred CCcccccEEEEEEccCCcccCceEee-cCCCCeEEEEecCCccc
Confidence 56899999999999888889999999 57888899999999864
No 342
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=96.43 E-value=0.005 Score=71.65 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=38.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhcc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~~ 1151 (1162)
+....|+|+||--.|-+..--..|.-.+.++.+ ...+++++||-+...
T Consensus 174 ~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v 222 (330)
T PRK15093 174 ANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQML 222 (330)
T ss_pred HCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 577899999999999888777777766666655 467899999998544
No 343
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.43 E-value=0.016 Score=74.28 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=34.4
Q ss_pred CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1105 TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1105 T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
.+.+++||||--.+-++.....|..++..+.+ ..+++++||-...
T Consensus 618 ~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~~ 662 (694)
T TIGR03375 618 RDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTSL 662 (694)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHH
Confidence 57789999998888777777777766665543 4689999998843
No 344
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=96.42 E-value=0.06 Score=67.52 Aligned_cols=51 Identities=8% Similarity=0.031 Sum_probs=33.4
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~ 1155 (1162)
....+++|+||--.+-+..--..|-..+..+. ...+++++||...+....+
T Consensus 492 ~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~~~~~~d 542 (576)
T TIGR02204 492 LKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLATVLKAD 542 (576)
T ss_pred HhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHhCC
Confidence 35678999999887777664444443343332 2568999999986654443
No 345
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.41 E-value=0.0079 Score=75.66 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=34.7
Q ss_pred CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccc
Q 001077 1105 TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDC 1155 (1162)
Q Consensus 1105 T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~ 1155 (1162)
.+..++||||--.+=+..--..|.-++..+.. ..++++.||-..+-+..+
T Consensus 493 ~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~~l~~~D 542 (592)
T PRK10790 493 QTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLSTIVEAD 542 (592)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchHHHHhCC
Confidence 46689999998777777666666665554433 468999999885444333
No 346
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=96.39 E-value=0.014 Score=72.84 Aligned_cols=57 Identities=12% Similarity=0.018 Sum_probs=38.1
Q ss_pred HHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhh-cccCceEEEehhhhcccccc
Q 001077 1097 TALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQ-SLAGSQFLSTLFIKCNAVDC 1155 (1162)
Q Consensus 1097 ta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~-~l~~~~~~~th~~~~~~~~~ 1155 (1162)
+|+.| .....++|+||.-.|-++..-..|..++.... ....+++++||-.......+
T Consensus 460 lARal--~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d 517 (547)
T PRK10522 460 LLLAL--AEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHAD 517 (547)
T ss_pred HHHHH--hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCC
Confidence 44444 46789999999988888777666655554332 23578999999874433333
No 347
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=96.38 E-value=0.0052 Score=77.59 Aligned_cols=55 Identities=13% Similarity=0.054 Sum_probs=41.7
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1095 SETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1095 ~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+.++-...-++..++++|||-=.|-+...-..|...+-.+.....+++++||...
T Consensus 173 kRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~ 227 (617)
T TIGR00955 173 KRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPS 227 (617)
T ss_pred hHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence 3333334445778999999999999988888887777766655677889999864
No 348
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.36 E-value=0.016 Score=65.71 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=40.3
Q ss_pred CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccceEe
Q 001077 1105 TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDCFQL 1158 (1162)
Q Consensus 1105 T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~~~~ 1158 (1162)
.+..++|+||.-.|-++..-..+.-.+.++.. ..+++++||......+.+-.+
T Consensus 191 ~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~~~~~~d~~~ 243 (276)
T cd03241 191 DAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQVAAMADNHF 243 (276)
T ss_pred CCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHHHHHhcCcEE
Confidence 38889999999999988877777766666544 467999999886655555443
No 349
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.36 E-value=0.022 Score=62.84 Aligned_cols=121 Identities=22% Similarity=0.292 Sum_probs=79.9
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCC-cccc---CCcc-------ee----------eeecCCc-----
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE-IFEI---SPVD-------RI----------FVRMGAK----- 1080 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~-~a~l---~i~D-------rI----------fTRIGa~----- 1080 (1162)
+.++.+-|||++||||+||+.- |.-+|-. ++++ -||| +| .=..-+.
T Consensus 50 G~ivgflGaNGAGKSTtLKmLT--------Gll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v 121 (325)
T COG4586 50 GEIVGFLGANGAGKSTTLKMLT--------GLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEV 121 (325)
T ss_pred CcEEEEEcCCCCcchhhHHHHh--------CccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHH
Confidence 4578999999999999999986 6555543 2221 1222 11 1111122
Q ss_pred --------cchhhcccchHHHHHHHHHHHhc-------------------CCCCcEEEEcCCCCCCChhhHHHHHHHHHH
Q 001077 1081 --------DHIMAGQSTFLTELSETALMLSS-------------------ATRNSLVVLDELGRGTSTSDGQAIAVFSSG 1133 (1162)
Q Consensus 1081 --------D~i~~g~STFmvEM~Eta~IL~~-------------------AT~~SLVIlDELGRGTst~DG~AIA~A~~~ 1133 (1162)
|+-++..=-|++||..+-.+|+. --+.-+++|||.==|-+..--.+|--++-+
T Consensus 122 ~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke 201 (325)
T COG4586 122 LKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKE 201 (325)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHH
Confidence 33344445578888776644431 135678999999999888888888888887
Q ss_pred hhc-ccCceEEEehhh-hcccccc
Q 001077 1134 FQS-LAGSQFLSTLFI-KCNAVDC 1155 (1162)
Q Consensus 1134 ~~~-l~~~~~~~th~~-~~~~~~~ 1155 (1162)
+-+ ...+++++||++ .+++|.+
T Consensus 202 ~n~~~~aTVllTTH~~~di~~lc~ 225 (325)
T COG4586 202 YNEERQATVLLTTHIFDDIATLCD 225 (325)
T ss_pred HHHhhCceEEEEecchhhHHHhhh
Confidence 544 666788899998 7776654
No 350
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.34 E-value=0.021 Score=71.52 Aligned_cols=60 Identities=8% Similarity=0.037 Sum_probs=37.8
Q ss_pred HHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccceEee
Q 001077 1097 TALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDCFQLT 1159 (1162)
Q Consensus 1097 ta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~~~~~ 1159 (1162)
+|+.| +.+..++||||--.+=+..-...|...+..+. ...+++++||-..+....+-.+.
T Consensus 480 LARal--l~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~~~~~~D~ii~ 539 (571)
T TIGR02203 480 IARAL--LKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLSTIEKADRIVV 539 (571)
T ss_pred HHHHH--hcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhHHHHhCCEEEE
Confidence 44444 46789999999665555555555544444331 24688999999977665554443
No 351
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.33 E-value=0.016 Score=72.87 Aligned_cols=45 Identities=13% Similarity=0.082 Sum_probs=32.0
Q ss_pred CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1105 TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1105 T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
.+.+++||||-=.+-++.--..|..++.++. ...+++++||....
T Consensus 502 ~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~ 546 (588)
T PRK11174 502 QPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLED 546 (588)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHH
Confidence 4568999999777776666666666555443 24688999998843
No 352
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=96.32 E-value=0.027 Score=71.66 Aligned_cols=53 Identities=11% Similarity=0.029 Sum_probs=35.4
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccceEee
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDCFQLT 1159 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~~~~~ 1159 (1162)
+....++||||--.|-++..-..|-.. +++...+++++||-.......+.-+.
T Consensus 598 ~~~p~illLDEpts~LD~~~~~~l~~~---l~~~~~tvI~isH~~~~~~~~d~il~ 650 (659)
T TIGR00954 598 YHKPQFAILDECTSAVSVDVEGYMYRL---CREFGITLFSVSHRKSLWKYHEYLLY 650 (659)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHH---HHHcCCEEEEEeCchHHHHhCCEEEE
Confidence 457789999998887776543333322 34456789999999865554444443
No 353
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=96.31 E-value=0.011 Score=74.89 Aligned_cols=46 Identities=13% Similarity=0.095 Sum_probs=36.6
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~ 1149 (1162)
+....|+||||--.|=+...-..|..-+-++.+ ...+++++||-..
T Consensus 184 ~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~ 230 (623)
T PRK10261 184 SCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG 230 (623)
T ss_pred hCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 467789999999988888777777776766653 4678999999874
No 354
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.30 E-value=0.023 Score=71.40 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=26.2
Q ss_pred ccccceecCCCCCcceEEEEccCCCChhHHHHHHH
Q 001077 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1014 fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1162)
.+-+|+.+.=. .+..+.|+|||++||||++|.++
T Consensus 357 ~il~~i~l~i~-~G~~~aIvG~sGsGKSTLl~ll~ 390 (582)
T PRK11176 357 PALRNINFKIP-AGKTVALVGRSGSGKSTIANLLT 390 (582)
T ss_pred ccccCceEEeC-CCCEEEEECCCCCCHHHHHHHHH
Confidence 45566666432 24579999999999999999997
No 355
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.28 E-value=0.017 Score=67.11 Aligned_cols=141 Identities=21% Similarity=0.299 Sum_probs=86.4
Q ss_pred CcEEEeeccCCccccccCCCCcccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCc-------
Q 001077 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI------- 1064 (1162)
Q Consensus 992 ~~l~i~~~RHP~le~~~~~~~~fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~------- 1064 (1162)
+.|+|++..+-+ + +..+=.|+.|.-. ...|+-|-||+++||||+||.|| |..=|-..
T Consensus 4 ~~l~i~~v~k~y------g-~~~av~~isl~i~-~Gef~~lLGPSGcGKTTlLR~IA--------Gfe~p~~G~I~l~G~ 67 (352)
T COG3842 4 PALEIRNVSKSF------G-DFTAVDDISLDIK-KGEFVTLLGPSGCGKTTLLRMIA--------GFEQPSSGEILLDGE 67 (352)
T ss_pred ceEEEEeeeeec------C-CeeEEecceeeec-CCcEEEEECCCCCCHHHHHHHHh--------CCCCCCCceEEECCE
Confidence 356666644322 2 2345566666532 34689999999999999999999 87655433
Q ss_pred --cccCCcce----------eeeecCCccchhhccc-----------chHHHHHH----------------------HHH
Q 001077 1065 --FEISPVDR----------IFVRMGAKDHIMAGQS-----------TFLTELSE----------------------TAL 1099 (1162)
Q Consensus 1065 --a~l~i~Dr----------IfTRIGa~D~i~~g~S-----------TFmvEM~E----------------------ta~ 1099 (1162)
..+++-.| +|-.|.-.|||.=|+. .-..||.+ +|-
T Consensus 68 ~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVAL 147 (352)
T COG3842 68 DITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVAL 147 (352)
T ss_pred ECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHH
Confidence 22333222 6667777888776655 13334444 111
Q ss_pred HHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHh-hcccCceEEEehhh
Q 001077 1100 MLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGF-QSLAGSQFLSTLFI 1148 (1162)
Q Consensus 1100 IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~-~~l~~~~~~~th~~ 1148 (1162)
.=.-+....++||||--..=+..=..-+-.-+-.+ +++..+.+..||--
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq 197 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ 197 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 12225778899999977655555555555445553 34667778899954
No 356
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=96.27 E-value=0.012 Score=74.27 Aligned_cols=46 Identities=13% Similarity=0.054 Sum_probs=35.8
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~ 1149 (1162)
+....|+|+||--.|=+..--..|--.+.++.+ ...+++++||-+.
T Consensus 479 ~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~ 525 (623)
T PRK10261 479 ALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA 525 (623)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 467889999999888887777777666666644 4678999999874
No 357
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.095 Score=63.69 Aligned_cols=196 Identities=20% Similarity=0.209 Sum_probs=106.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeEcCC-CCCCCCcEEEeeccCCccccccCCCCccccc
Q 001077 939 RLIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDS-CSNEEPYISAKSLGHPVLRSDSLGKGEFVPN 1017 (1162)
Q Consensus 939 ~l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~-~~~~~~~l~i~~~RHP~le~~~~~~~~fVPN 1017 (1162)
+++.-+++--..|.....-.|..|.+.+|-..- .+.|.-... .....+.+++. ..|-.+.. ..++.+++
T Consensus 269 Eff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~------~~~~~~~~~~~~~~~~~~ei~-~~~l~~~y---~~g~~~l~ 338 (559)
T COG4988 269 EFFQPLRDLGSFFHAAAAGEAAADKLFTLLESP------VATPGSGEKAEVANEPPIEIS-LENLSFRY---PDGKPALS 338 (559)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCC------CCCCCCccccccccCCCceee-ecceEEec---CCCCcccC
Confidence 344444555566667777788888888775422 222211100 00112234443 22322221 23348899
Q ss_pred ceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCC-------------------cce---eee
Q 001077 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISP-------------------VDR---IFV 1075 (1162)
Q Consensus 1018 Di~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i-------------------~Dr---IfT 1075 (1162)
|+.+.-. ..+...|.||+++||||++..++ |.. |+..-+|.+ +.. ||.
T Consensus 339 ~l~~t~~-~g~~talvG~SGaGKSTLl~lL~--------G~~-~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~ 408 (559)
T COG4988 339 DLNLTIK-AGQLTALVGASGAGKSTLLNLLL--------GFL-APTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA 408 (559)
T ss_pred CceeEec-CCcEEEEECCCCCCHHHHHHHHh--------CcC-CCCCceEEECCccccccCHHHHHhHeeeeCCCCcccc
Confidence 9988753 35689999999999999998776 533 323222211 111 121
Q ss_pred -------ecCCc---cc--------------hh--hcccchHH---------HHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q 001077 1076 -------RMGAK---DH--------------IM--AGQSTFLT---------ELSETALMLSSATRNSLVVLDELGRGTS 1120 (1162)
Q Consensus 1076 -------RIGa~---D~--------------i~--~g~STFmv---------EM~Eta~IL~~AT~~SLVIlDELGRGTs 1120 (1162)
++|.. |. +. .|..|=.. +..+++-.=.-..+.+|+|+||-=.+=+
T Consensus 409 gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD 488 (559)
T COG4988 409 GTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLD 488 (559)
T ss_pred ccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCC
Confidence 11211 11 00 12222221 2333332222246799999999877777
Q ss_pred hhhHHHHHHHHHHhhcccCceEEEehhh-hcccccc
Q 001077 1121 TSDGQAIAVFSSGFQSLAGSQFLSTLFI-KCNAVDC 1155 (1162)
Q Consensus 1121 t~DG~AIA~A~~~~~~l~~~~~~~th~~-~~~~~~~ 1155 (1162)
.+--.-|-.++.++.+- .+++++||=. +....|+
T Consensus 489 ~etE~~i~~~l~~l~~~-ktvl~itHrl~~~~~~D~ 523 (559)
T COG4988 489 AETEQIILQALQELAKQ-KTVLVITHRLEDAADADR 523 (559)
T ss_pred HhHHHHHHHHHHHHHhC-CeEEEEEcChHHHhcCCE
Confidence 77667777777775554 6899999987 4444443
No 358
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=96.25 E-value=0.077 Score=68.04 Aligned_cols=42 Identities=31% Similarity=0.601 Sum_probs=31.8
Q ss_pred cccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCC
Q 001077 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE 1063 (1162)
Q Consensus 1013 ~fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~ 1063 (1162)
..|=+|+.+.=. .+..+.|+|||++||||++|.++ |.|-|-+
T Consensus 466 ~~vL~~isl~i~-~Ge~vaIvG~sGsGKSTLlklL~--------gl~~p~~ 507 (686)
T TIGR03797 466 PLILDDVSLQIE-PGEFVAIVGPSGSGKSTLLRLLL--------GFETPES 507 (686)
T ss_pred ccceeeeEEEEC-CCCEEEEECCCCCCHHHHHHHHh--------CCCCCCC
Confidence 346666666532 34579999999999999999998 7777754
No 359
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.17 E-value=0.0048 Score=72.35 Aligned_cols=81 Identities=20% Similarity=0.389 Sum_probs=52.0
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcC----CcccCCccccCCcceeeeecCCccchhh-----cccchHHH-HHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG----ADVPAEIFEISPVDRIFVRMGAKDHIMA-----GQSTFLTE-LSE 1096 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG----~fVPA~~a~l~i~DrIfTRIGa~D~i~~-----g~STFmvE-M~E 1096 (1162)
..+++|.|||++||||++..+|-..++.+ | .+|.++.. |+|+.+.+.. |...+.+. -.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~-G~~~V~lit~D~~----------R~ga~EqL~~~a~~~gv~~~~~~~~~~ 205 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF-GASKVALLTTDSY----------RIGGHEQLRIFGKILGVPVHAVKDGGD 205 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEecccc----------cccHHHHHHHHHHHcCCceEecCCccc
Confidence 35799999999999999999987654432 3 23333332 5666665532 33333221 112
Q ss_pred HHHHHhcCCCCcEEEEcCCCCC
Q 001077 1097 TALMLSSATRNSLVVLDELGRG 1118 (1162)
Q Consensus 1097 ta~IL~~AT~~SLVIlDELGRG 1118 (1162)
....|.......+||||..|+.
T Consensus 206 l~~~l~~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 206 LQLALAELRNKHMVLIDTIGMS 227 (374)
T ss_pred HHHHHHHhcCCCEEEEcCCCCC
Confidence 3445666677899999999987
No 360
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.16 E-value=0.016 Score=62.32 Aligned_cols=19 Identities=47% Similarity=0.754 Sum_probs=17.5
Q ss_pred eEEEEccCCCChhHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQV 1047 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqv 1047 (1162)
+++|+||+++||||+|+.+
T Consensus 3 lilI~GptGSGKTTll~~l 21 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAM 21 (198)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999874
No 361
>PRK08181 transposase; Validated
Probab=96.15 E-value=0.015 Score=65.45 Aligned_cols=95 Identities=24% Similarity=0.300 Sum_probs=61.5
Q ss_pred eEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHH------HHHHHHh
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELS------ETALMLS 1102 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~------Eta~IL~ 1102 (1162)
-++|+||.|.|||-++..+|..++- -|.-| +|+++ . .++.++. ....+++
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~--~g~~v------------~f~~~---~-------~L~~~l~~a~~~~~~~~~l~ 163 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIE--NGWRV------------LFTRT---T-------DLVQKLQVARRELQLESAIA 163 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHH--cCCce------------eeeeH---H-------HHHHHHHHHHhCCcHHHHHH
Confidence 4899999999999999988876543 36332 22221 0 0111111 1223455
Q ss_pred cCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehh
Q 001077 1103 SATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLF 1147 (1162)
Q Consensus 1103 ~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~ 1147 (1162)
....-.|+||||||.-..+..+..+-+.+....+....++++|.+
T Consensus 164 ~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 164 KLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred HHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 556778999999999877777766666666644444678887765
No 362
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.15 E-value=0.013 Score=71.01 Aligned_cols=82 Identities=22% Similarity=0.343 Sum_probs=50.9
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcC---CcccCCccccCCcceeeeecCCccchhh-----cccchH-HHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVG---ADVPAEIFEISPVDRIFVRMGAKDHIMA-----GQSTFL-TELSETA 1098 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG---~fVPA~~a~l~i~DrIfTRIGa~D~i~~-----g~STFm-vEM~Eta 1098 (1162)
.+++|+||+|.||||++..+|....+-+.| ++|.++.. |+|+.+.+.. |..... ....++.
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDty----------RigA~EQLk~ya~iLgv~v~~a~d~~~L~ 420 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQ----------RVGGREQLHSYGRQLGIAVHEADSAESLL 420 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccc----------cccHHHHHHHhhcccCceeEecCcHHHHH
Confidence 578999999999999999988765543322 34444433 4444332211 111111 1123456
Q ss_pred HHHhcCCCCcEEEEcCCCCCC
Q 001077 1099 LMLSSATRNSLVVLDELGRGT 1119 (1162)
Q Consensus 1099 ~IL~~AT~~SLVIlDELGRGT 1119 (1162)
.+|+......|||||..|++-
T Consensus 421 ~aL~~l~~~DLVLIDTaG~s~ 441 (559)
T PRK12727 421 DLLERLRDYKLVLIDTAGMGQ 441 (559)
T ss_pred HHHHHhccCCEEEecCCCcch
Confidence 677776778999999999973
No 363
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.13 E-value=0.021 Score=73.55 Aligned_cols=49 Identities=10% Similarity=-0.003 Sum_probs=32.6
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~ 1155 (1162)
..+..++||||--.+-+..--..|..++ .+...+++++||-...-...+
T Consensus 631 l~~p~iliLDEptS~LD~~te~~i~~~l---~~~~~T~IiitHrl~~i~~~D 679 (710)
T TIGR03796 631 VRNPSILILDEATSALDPETEKIIDDNL---RRRGCTCIIVAHRLSTIRDCD 679 (710)
T ss_pred hhCCCEEEEECccccCCHHHHHHHHHHH---HhcCCEEEEEecCHHHHHhCC
Confidence 4678899999976666655544444443 446788999999984433333
No 364
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=96.12 E-value=0.0077 Score=69.96 Aligned_cols=52 Identities=17% Similarity=0.040 Sum_probs=39.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhcc-cccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKCN-AVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~~-~~~~ 1155 (1162)
+....|+|+||--.|-+..--..|.-.+.++.+ ...+++++||.+... .+.+
T Consensus 169 ~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~ad 222 (326)
T PRK11022 169 ACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAH 222 (326)
T ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 467789999999999887777666666666654 466899999998654 3444
No 365
>PRK04296 thymidine kinase; Provisional
Probab=96.09 E-value=0.022 Score=60.94 Aligned_cols=108 Identities=18% Similarity=0.116 Sum_probs=56.5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcCC--c--ccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHh-
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGA--D--VPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLS- 1102 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~--f--VPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~- 1102 (1162)
.+.+||||-++||||++.+.+.-..- -|- + -|+-.-+-+ ..+|.+|+|-. +.. .+.....+....++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~--~g~~v~i~k~~~d~~~~-~~~i~~~lg~~--~~~---~~~~~~~~~~~~~~~ 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEE--RGMKVLVFKPAIDDRYG-EGKVVSRIGLS--REA---IPVSSDTDIFELIEE 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH--cCCeEEEEecccccccc-CCcEecCCCCc--ccc---eEeCChHHHHHHHHh
Confidence 58999999999999999988765443 352 2 233111222 44578888732 110 00011112222222
Q ss_pred cCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehh
Q 001077 1103 SATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLF 1147 (1162)
Q Consensus 1103 ~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~ 1147 (1162)
......+|+|||++. .+---|-..+..+......++++.+-
T Consensus 75 ~~~~~dvviIDEaq~----l~~~~v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 75 EGEKIDCVLIDEAQF----LDKEQVVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred hCCCCCEEEEEcccc----CCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 234568999999965 11111211122234555566666655
No 366
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.08 E-value=0.17 Score=62.42 Aligned_cols=59 Identities=20% Similarity=0.133 Sum_probs=36.3
Q ss_pred HHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEE-EehhhhcccccceEeee
Q 001077 1097 TALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFL-STLFIKCNAVDCFQLTI 1160 (1162)
Q Consensus 1097 ta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~-~th~~~~~~~~~~~~~~ 1160 (1162)
.|+|| -++...|+|||- ||.-|.-.-....-.+++ +..++++ ..|=-++..+...++++
T Consensus 526 fARil--L~kP~~v~LDEA---TsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l 586 (604)
T COG4178 526 FARLL--LHKPKWVFLDEA---TSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLEL 586 (604)
T ss_pred HHHHH--HcCCCEEEEecc---hhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheee
Confidence 45554 367889999995 666666544333333444 4555555 67766777766666654
No 367
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.04 E-value=0.0052 Score=74.23 Aligned_cols=81 Identities=20% Similarity=0.389 Sum_probs=48.5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcC---CcccCCccccCCcceeeeecCCccchhh-----cccchHH-HHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVG---ADVPAEIFEISPVDRIFVRMGAKDHIMA-----GQSTFLT-ELSETA 1098 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG---~fVPA~~a~l~i~DrIfTRIGa~D~i~~-----g~STFmv-EM~Eta 1098 (1162)
.++++.||||+||||++..+|-...+-+=+ ++|+++.. |+|+.++|.. |.+.+.+ +-.+..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~----------RigA~EQLr~~AeilGVpv~~~~~~~Dl~ 326 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSY----------RIGGHEQLRIYGKILGVPVHAVKDAADLR 326 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCcc----------chhHHHHHHHHHHHhCCCeeccCCchhHH
Confidence 589999999999999999999655443311 24555543 4555444421 1111111 011222
Q ss_pred HHHhcCCCCcEEEEcCCCCC
Q 001077 1099 LMLSSATRNSLVVLDELGRG 1118 (1162)
Q Consensus 1099 ~IL~~AT~~SLVIlDELGRG 1118 (1162)
..+.......+||||..||+
T Consensus 327 ~aL~~L~d~d~VLIDTaGr~ 346 (484)
T PRK06995 327 LALSELRNKHIVLIDTIGMS 346 (484)
T ss_pred HHHHhccCCCeEEeCCCCcC
Confidence 23445556689999999886
No 368
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=95.99 E-value=0.037 Score=69.07 Aligned_cols=46 Identities=4% Similarity=-0.047 Sum_probs=33.9
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHH-hhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSG-FQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~-~~~l~~~~~~~th~~~ 1149 (1162)
..+..++|+||.-.|-++.--..|-.++.. +.....+++++||...
T Consensus 486 l~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~ 532 (555)
T TIGR01194 486 LEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ 532 (555)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH
Confidence 467889999999888887776666554442 3344678999999863
No 369
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=95.98 E-value=0.034 Score=69.02 Aligned_cols=46 Identities=13% Similarity=0.091 Sum_probs=35.3
Q ss_pred CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcc
Q 001077 1105 TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1105 T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~ 1151 (1162)
.+..++|+||.-.+-+...-..|.-++..+. ...++++.||-....
T Consensus 475 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~ 520 (529)
T TIGR02857 475 RDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLALA 520 (529)
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHH
Confidence 4678999999998888887777776666553 356889999987443
No 370
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=95.94 E-value=0.03 Score=65.18 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=37.7
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhcc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~~ 1151 (1162)
+....|+|+||--.|-+..--.-|.-.+.++.+ ...+++++||-+...
T Consensus 177 ~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~ 225 (330)
T PRK09473 177 LCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVV 225 (330)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHH
Confidence 567899999999888887777777666666655 467899999998654
No 371
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.91 E-value=0.024 Score=62.58 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=20.7
Q ss_pred cceEEEEccCCCChhHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1162)
..+++|+|||++||||+..|++.-
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~ 47 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYG 47 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999998887654
No 372
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.90 E-value=0.022 Score=65.89 Aligned_cols=121 Identities=25% Similarity=0.271 Sum_probs=87.8
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCC---------------------cccCC-cccc---CCcce---------
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGA---------------------DVPAE-IFEI---SPVDR--------- 1072 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~---------------------fVPA~-~a~l---~i~Dr--------- 1072 (1162)
..+.+|+|+.++||||+||++.=. |.|. -+|.+ ..++ .+.+.
T Consensus 409 GdvvaVvGqSGaGKttllRmi~G~----~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~ 484 (593)
T COG2401 409 GDVVAVVGQSGAGKTTLLRMILGA----QKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLN 484 (593)
T ss_pred CCeEEEEecCCCCcchHHHHHHHH----hhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchh
Confidence 347999999999999999997632 2222 23433 2222 34444
Q ss_pred ----eeeecCCccch-----hhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhh-cccCceE
Q 001077 1073 ----IFVRMGAKDHI-----MAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQ-SLAGSQF 1142 (1162)
Q Consensus 1073 ----IfTRIGa~D~i-----~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~-~l~~~~~ 1142 (1162)
|..|.|.+|-+ ...+||=..|=..+|..|. ....|.|+||++.=-++.-..-+|--++++. +...+.+
T Consensus 485 ~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAklla--erpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTli 562 (593)
T COG2401 485 AAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLA--ERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLI 562 (593)
T ss_pred HHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHh--cCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEE
Confidence 44556667754 3457888888888888885 4558999999999888888888898888854 5777888
Q ss_pred EEehhh-hcccc
Q 001077 1143 LSTLFI-KCNAV 1153 (1162)
Q Consensus 1143 ~~th~~-~~~~~ 1153 (1162)
++||.. -.+||
T Consensus 563 vvThrpEv~~AL 574 (593)
T COG2401 563 VVTHRPEVGNAL 574 (593)
T ss_pred EEecCHHHHhcc
Confidence 899988 67787
No 373
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=95.90 E-value=0.029 Score=77.63 Aligned_cols=51 Identities=14% Similarity=-0.022 Sum_probs=37.1
Q ss_pred CCCcEEEEcCCCCCCChhhHHHHHHHH-HHhhcccCceEEEehhhhcccccce
Q 001077 1105 TRNSLVVLDELGRGTSTSDGQAIAVFS-SGFQSLAGSQFLSTLFIKCNAVDCF 1156 (1162)
Q Consensus 1105 T~~SLVIlDELGRGTst~DG~AIA~A~-~~~~~l~~~~~~~th~~~~~~~~~~ 1156 (1162)
....++||||.-.|-++.-+..|-..+ ..+.+ ..+++++||........+.
T Consensus 565 ~~~~illLDep~saLD~~~~~~i~~~~l~~~~~-~~tvilvtH~~~~~~~ad~ 616 (1490)
T TIGR01271 565 KDADLYLLDSPFTHLDVVTEKEIFESCLCKLMS-NKTRILVTSKLEHLKKADK 616 (1490)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CCeEEEEeCChHHHHhCCE
Confidence 457899999999999999998886533 33332 5789999999854433343
No 374
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=95.83 E-value=0.087 Score=60.85 Aligned_cols=140 Identities=17% Similarity=0.178 Sum_probs=86.5
Q ss_pred CcEEEeeccCCccccccCCCCcccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccc-----
Q 001077 992 PYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFE----- 1066 (1162)
Q Consensus 992 ~~l~i~~~RHP~le~~~~~~~~fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~----- 1066 (1162)
..|++++.|--..+.. + ..=|-++.+. ++.++.|+|-|++||||+++-.. |.|-|-..--
T Consensus 321 ~~lelrnvrfay~~~~-F---hvgPiNl~ik---rGelvFliG~NGsGKST~~~LLt--------GL~~PqsG~I~ldg~ 385 (546)
T COG4615 321 KTLELRNVRFAYQDNA-F---HVGPINLTIK---RGELVFLIGGNGSGKSTLAMLLT--------GLYQPQSGEILLDGK 385 (546)
T ss_pred cceeeeeeeeccCccc-c---eecceeeEEe---cCcEEEEECCCCCcHHHHHHHHh--------cccCCCCCceeECCc
Confidence 3577777776444321 0 1234444443 34689999999999999998776 9998854310
Q ss_pred ----------cCCcceeeeecCCccchhhccc-------chHHHHHH------------------------HHHHHhcCC
Q 001077 1067 ----------ISPVDRIFVRMGAKDHIMAGQS-------TFLTELSE------------------------TALMLSSAT 1105 (1162)
Q Consensus 1067 ----------l~i~DrIfTRIGa~D~i~~g~S-------TFmvEM~E------------------------ta~IL~~AT 1105 (1162)
=++|..||+..---|.+..+.- +|.-+-.| .|.++.-.-
T Consensus 386 pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllE 465 (546)
T COG4615 386 PVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLE 465 (546)
T ss_pred cCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHh
Confidence 1234456666554454444332 44444444 455555667
Q ss_pred CCcEEEEcCCCCCCChhhHHHHHHHHH-HhhcccCceEEEeh
Q 001077 1106 RNSLVVLDELGRGTSTSDGQAIAVFSS-GFQSLAGSQFLSTL 1146 (1162)
Q Consensus 1106 ~~SLVIlDELGRGTst~DG~AIA~A~~-~~~~l~~~~~~~th 1146 (1162)
+|...++||...--+|.=.-=--.-.. .+++...++|.+||
T Consensus 466 eR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsH 507 (546)
T COG4615 466 ERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISH 507 (546)
T ss_pred hCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEec
Confidence 899999999988777654432222222 27778889999998
No 375
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.83 E-value=0.0076 Score=64.16 Aligned_cols=29 Identities=38% Similarity=0.631 Sum_probs=25.3
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCC
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE 1063 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~ 1063 (1162)
..++.|-|||++||||+||..+ |-+-|..
T Consensus 27 Gev~ailGPNGAGKSTlLk~Ls--------Gel~p~~ 55 (259)
T COG4559 27 GEVLAILGPNGAGKSTLLKALS--------GELSPDS 55 (259)
T ss_pred CcEEEEECCCCccHHHHHHHhh--------CccCCCC
Confidence 4689999999999999999998 8777655
No 376
>PLN03140 ABC transporter G family member; Provisional
Probab=95.81 E-value=0.017 Score=79.28 Aligned_cols=47 Identities=9% Similarity=0.031 Sum_probs=36.5
Q ss_pred cCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1103 SATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1103 ~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
-++..+|+||||--.|=+..--..|-..+-.+.+...+++++||-..
T Consensus 1034 L~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~ 1080 (1470)
T PLN03140 1034 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1080 (1470)
T ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 35788999999999998877766666656556555678999999865
No 377
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.80 E-value=0.016 Score=59.29 Aligned_cols=124 Identities=22% Similarity=0.264 Sum_probs=69.3
Q ss_pred EEEEccCCCChhHHHHHHHHHHHHHHcCCcc-----cCC--c---cccCCcc------eeeeecCCccchhhcccchHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVCLAVILAQVGADV-----PAE--I---FEISPVD------RIFVRMGAKDHIMAGQSTFLTE 1093 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaLivILAQiG~fV-----PA~--~---a~l~i~D------rIfTRIGa~D~i~~g~STFmvE 1093 (1162)
+.||||.+.||||++.-++ =.|.+-|+-| |-- . --+.++| .+|++.|.+---.--.--+.-.
T Consensus 8 i~ITG~PGvGKtTl~~ki~--e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~ 85 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIA--EKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEG 85 (179)
T ss_pred EEEeCCCCccHHHHHHHHH--HHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHH
Confidence 7899999999999988765 3455554333 310 0 1133333 3788888732222222334445
Q ss_pred HHH-HHHHHhcCCCC-cEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh--------cccccceEe
Q 001077 1094 LSE-TALMLSSATRN-SLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK--------CNAVDCFQL 1158 (1162)
Q Consensus 1094 M~E-ta~IL~~AT~~-SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~--------~~~~~~~~~ 1158 (1162)
+.| +...|++|-.. .+|||||+|.=--..-.+ --++-+..+- ..-+++|.|.+ +..+.+.++
T Consensus 86 le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f--~~~ve~vl~~-~kpliatlHrrsr~P~v~~ik~~~~v~v 157 (179)
T COG1618 86 LEEIAIPALRRALEEADVIIIDEIGPMELKSKKF--REAVEEVLKS-GKPLIATLHRRSRHPLVQRIKKLGGVYV 157 (179)
T ss_pred HHHHhHHHHHHHhhcCCEEEEecccchhhccHHH--HHHHHHHhcC-CCcEEEEEecccCChHHHHhhhcCCEEE
Confidence 553 55678887555 999999999743222222 1223332222 23366666643 555555554
No 378
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=95.77 E-value=0.021 Score=74.96 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=37.6
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhh-hcccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFI-KCNAV 1153 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~-~~~~~ 1153 (1162)
....++|+|||---|-++..---+=..+.+..+...+++++||.+ -|.||
T Consensus 714 ig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaL 764 (885)
T KOG0059|consen 714 IGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEAL 764 (885)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHH
Confidence 456899999999999999666544444455666555999999999 56555
No 379
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.75 E-value=0.046 Score=68.54 Aligned_cols=46 Identities=15% Similarity=0.170 Sum_probs=34.5
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
..+..++|+||--.+-++..-..|..++..+.+ ..+++++||-...
T Consensus 491 l~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~-~~tviiitHr~~~ 536 (574)
T PRK11160 491 LHDAPLLLLDEPTEGLDAETERQILELLAEHAQ-NKTVLMITHRLTG 536 (574)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecChhH
Confidence 356789999998888877777777666665533 5688999998743
No 380
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.73 E-value=0.0053 Score=61.43 Aligned_cols=22 Identities=41% Similarity=0.736 Sum_probs=20.1
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
..+++|+|||++||||+||.++
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~ 32 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALA 32 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHT
T ss_pred CCEEEEEccCCCccccceeeec
Confidence 4589999999999999999887
No 381
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=95.72 E-value=0.1 Score=68.26 Aligned_cols=72 Identities=15% Similarity=0.063 Sum_probs=51.2
Q ss_pred cchHHHHHHHHHHHhc-CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccceEee
Q 001077 1088 STFLTELSETALMLSS-ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDCFQLT 1159 (1162)
Q Consensus 1088 STFmvEM~Eta~IL~~-AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~~~~~ 1159 (1162)
|.=+.-...++..|-. .+.+.|+||||--.|-+..+-..|--.+..+.+...+++++||....-...++-+.
T Consensus 832 SgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~ 904 (943)
T PRK00349 832 SGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIID 904 (943)
T ss_pred CHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEE
Confidence 4444444445555543 23348999999999999999988887777776667899999999865455555443
No 382
>PRK06893 DNA replication initiation factor; Validated
Probab=95.69 E-value=0.028 Score=61.97 Aligned_cols=93 Identities=23% Similarity=0.269 Sum_probs=53.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcC-CcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCCC
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVG-ADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATR 1106 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG-~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT~ 1106 (1162)
+.++|.||-|.|||.+++.+|-.+.-.+.. .|+++. +.+ .|. ..+++....
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~---------------~~~-------~~~------~~~~~~~~~ 91 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS---------------KSQ-------YFS------PAVLENLEQ 91 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH---------------Hhh-------hhh------HHHHhhccc
Confidence 468999999999999999999664433211 233332 111 111 134555667
Q ss_pred CcEEEEcCCCCCCChhhHH-HHHHHHHHhhcccCceEEEehhh
Q 001077 1107 NSLVVLDELGRGTSTSDGQ-AIAVFSSGFQSLAGSQFLSTLFI 1148 (1162)
Q Consensus 1107 ~SLVIlDELGRGTst~DG~-AIA~A~~~~~~l~~~~~~~th~~ 1148 (1162)
..|++|||+++.....+.. ++-..+-...+-...+++.|+-.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~ 134 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADC 134 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 7899999999865433322 33332333333334455665543
No 383
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.66 E-value=0.076 Score=58.00 Aligned_cols=57 Identities=5% Similarity=0.019 Sum_probs=40.0
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhh-cccCceEEEehhhhcccccceEeee
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQ-SLAGSQFLSTLFIKCNAVDCFQLTI 1160 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~-~l~~~~~~~th~~~~~~~~~~~~~~ 1160 (1162)
++...|||.||-=--=++.-+-.|--.+.++. +...+++++||=..++...+-.+.+
T Consensus 158 ~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l 215 (226)
T COG1136 158 INNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIEL 215 (226)
T ss_pred hcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEE
Confidence 67899999999765555555655555455543 3466899999999888776655443
No 384
>PRK06921 hypothetical protein; Provisional
Probab=95.59 E-value=0.043 Score=61.93 Aligned_cols=99 Identities=17% Similarity=0.182 Sum_probs=57.3
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcC---CcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcC
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVG---ADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSA 1104 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG---~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~A 1104 (1162)
.-++|+||.|.|||.++..+|-.++- +-| .|+++.. +++ . +. ..| .....+++..
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~-~~g~~v~y~~~~~----l~~----~------l~---~~~----~~~~~~~~~~ 175 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMR-KKGVPVLYFPFVE----GFG----D------LK---DDF----DLLEAKLNRM 175 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhh-hcCceEEEEEHHH----HHH----H------HH---HHH----HHHHHHHHHh
Confidence 45899999999999999988765432 213 3545311 111 1 11 112 1223345555
Q ss_pred CCCcEEEEcCCCC---CCC--hhhHHHHHHHHHHhhcc-cCceEEEehhh
Q 001077 1105 TRNSLVVLDELGR---GTS--TSDGQAIAVFSSGFQSL-AGSQFLSTLFI 1148 (1162)
Q Consensus 1105 T~~SLVIlDELGR---GTs--t~DG~AIA~A~~~~~~l-~~~~~~~th~~ 1148 (1162)
..-.|+|||+|+. |+. +......-+.+...... ...++++|.+.
T Consensus 176 ~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~ 225 (266)
T PRK06921 176 KKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELT 225 (266)
T ss_pred cCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 6778999999966 653 33333344555554443 34577887753
No 385
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.58 E-value=0.047 Score=67.79 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=25.5
Q ss_pred cccceecCCCCCcceEEEEccCCCChhHHHHHHH
Q 001077 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1015 VPNDi~l~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1162)
|=+|+.+.-. .+..+.|+||+++||||+++.++
T Consensus 350 vL~~isl~i~-~G~~vaIvG~SGsGKSTLl~lL~ 382 (529)
T TIGR02868 350 VLDGVSLDLP-PGERVAILGPSGSGKSTLLMLLT 382 (529)
T ss_pred eeecceEEEc-CCCEEEEECCCCCCHHHHHHHHh
Confidence 4566665432 34679999999999999999887
No 386
>PF13173 AAA_14: AAA domain
Probab=95.56 E-value=0.021 Score=56.83 Aligned_cols=25 Identities=44% Similarity=0.672 Sum_probs=21.7
Q ss_pred cceEEEEccCCCChhHHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
.++++|+||=+.||||+|+|++--.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998433
No 387
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.56 E-value=0.013 Score=61.74 Aligned_cols=117 Identities=16% Similarity=0.075 Sum_probs=58.6
Q ss_pred EEEEccCCCChhHHHHHHHHHHHHH-HcCCcccCCccccCCcceeeeecCCcc-----------------chhhcccchH
Q 001077 1030 ILLTGPNMGGKSTLLRQVCLAVILA-QVGADVPAEIFEISPVDRIFVRMGAKD-----------------HIMAGQSTFL 1091 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaLivILA-QiG~fVPA~~a~l~i~DrIfTRIGa~D-----------------~i~~g~STFm 1091 (1162)
++|+||.|+|||++.-|++.-.... .-++||-.+...=.+. +.+.++|-.- .+..|+ +.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~-~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~--~~ 78 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELI-ENAESLGWDLERLEDEGLLAIVDADPDEIGPAE--SS 78 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHH-HHHHHcCCChHHHHhcCCeEEEecCccccchhh--hh
Confidence 6899999999999999998775532 1224554432110000 0111111110 000110 10
Q ss_pred H--H-HHHHHHHHhcCCCCcEEEEcCCCCCCCh---hhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1092 T--E-LSETALMLSSATRNSLVVLDELGRGTST---SDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1092 v--E-M~Eta~IL~~AT~~SLVIlDELGRGTst---~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
. + +..+..++. .....+|||||+..+.+. ..-..+...+..+.+...++++++|....
T Consensus 79 ~~~~~~~~i~~~~~-~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~ 142 (187)
T cd01124 79 LRLELIQRLKDAIE-EFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGL 142 (187)
T ss_pred hhHHHHHHHHHHHH-HhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccC
Confidence 0 1 122222222 245679999999987762 22222323333345556677888887653
No 388
>PTZ00243 ABC transporter; Provisional
Probab=95.55 E-value=0.03 Score=77.66 Aligned_cols=52 Identities=10% Similarity=-0.030 Sum_probs=35.4
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~ 1155 (1162)
+....++||||.-.|-+...+..|-..+........+++++||...+....+
T Consensus 798 ~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad 849 (1560)
T PTZ00243 798 YANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRAD 849 (1560)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCC
Confidence 3567899999999999888777665433221112568999999885544333
No 389
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=95.50 E-value=0.14 Score=70.49 Aligned_cols=71 Identities=20% Similarity=0.129 Sum_probs=52.2
Q ss_pred cchHHHHHHHHHHHhc-CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccceEe
Q 001077 1088 STFLTELSETALMLSS-ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDCFQL 1158 (1162)
Q Consensus 1088 STFmvEM~Eta~IL~~-AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~~~~ 1158 (1162)
|.=+.-...+|..|-. +....|+||||--.|-+..+-..+.-.+.++.+...+++++||......+.+.-+
T Consensus 811 SGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi 882 (1809)
T PRK00635 811 SGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVL 882 (1809)
T ss_pred CHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEE
Confidence 4444444456666643 5678999999999999999988888877777777788999999885445544443
No 390
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.50 E-value=0.082 Score=62.99 Aligned_cols=51 Identities=20% Similarity=0.064 Sum_probs=41.7
Q ss_pred CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccc
Q 001077 1105 TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDC 1155 (1162)
Q Consensus 1105 T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~ 1155 (1162)
...-||+|||--.--+..--.|++-|+.+.+.-...++++||-...-+.-+
T Consensus 489 G~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~D 539 (580)
T COG4618 489 GDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVD 539 (580)
T ss_pred CCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcc
Confidence 456699999998887776668999999999999999999999774433333
No 391
>PRK12377 putative replication protein; Provisional
Probab=95.50 E-value=0.068 Score=59.57 Aligned_cols=101 Identities=21% Similarity=0.253 Sum_probs=61.5
Q ss_pred eEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhc-ccchHHHHHHHHHHHhcCCCC
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAG-QSTFLTELSETALMLSSATRN 1107 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g-~STFmvEM~Eta~IL~~AT~~ 1107 (1162)
.++|+||.+.|||.++..+|-.++ +-|..| +|+.+. | +... ..+|-.. .....+++....-
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v------------~~i~~~--~-l~~~l~~~~~~~-~~~~~~l~~l~~~ 164 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLL--AKGRSV------------IVVTVP--D-VMSRLHESYDNG-QSGEKFLQELCKV 164 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH--HcCCCe------------EEEEHH--H-HHHHHHHHHhcc-chHHHHHHHhcCC
Confidence 489999999999999999987665 335433 222110 1 1100 0111000 0123577778899
Q ss_pred cEEEEcCCCCCCChhhHHHHHHHHHHhhccc-CceEEEehh
Q 001077 1108 SLVVLDELGRGTSTSDGQAIAVFSSGFQSLA-GSQFLSTLF 1147 (1162)
Q Consensus 1108 SLVIlDELGRGTst~DG~AIA~A~~~~~~l~-~~~~~~th~ 1147 (1162)
.|+||||||.--.+.....+-+.+.+..... ..++++|-+
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999999987655555666777777755543 346666643
No 392
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.50 E-value=0.063 Score=57.55 Aligned_cols=127 Identities=17% Similarity=0.276 Sum_probs=77.8
Q ss_pred ccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccC------------------------C
Q 001077 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEIS------------------------P 1069 (1162)
Q Consensus 1014 fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~------------------------i 1069 (1162)
-+=|.+.|.-. ...|+.|-|.|++||||++..++ |--.|-. .++. +
T Consensus 20 ~~l~~~sL~I~-~g~FvtViGsNGAGKSTlln~ia--------G~l~~t~-G~I~Idg~dVtk~~~~~RA~~larVfQdp 89 (263)
T COG1101 20 RALNGLSLEIA-EGDFVTVIGSNGAGKSTLLNAIA--------GDLKPTS-GQILIDGVDVTKKSVAKRANLLARVFQDP 89 (263)
T ss_pred HHHhcCceeec-CCceEEEEcCCCccHHHHHHHhh--------CccccCC-ceEEECceecccCCHHHHhhHHHHHhcch
Confidence 44455555432 35699999999999999999998 6554432 2211 1
Q ss_pred cceeeeecCCccchhh-----------------cccchHHHHHH-----------------------HHHHHhcCCCCcE
Q 001077 1070 VDRIFVRMGAKDHIMA-----------------GQSTFLTELSE-----------------------TALMLSSATRNSL 1109 (1162)
Q Consensus 1070 ~DrIfTRIGa~D~i~~-----------------g~STFmvEM~E-----------------------ta~IL~~AT~~SL 1109 (1162)
..+-++++--..|+.- -.+.|..++.+ ++-++..+.+.-+
T Consensus 90 ~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pki 169 (263)
T COG1101 90 LAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKI 169 (263)
T ss_pred hhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcE
Confidence 2222333333334321 13457777766 6667777889999
Q ss_pred EEEcCCCCCCChhhHHHHHHHHHH-hhcccCceEEEehhhhc
Q 001077 1110 VVLDELGRGTSTSDGQAIAVFSSG-FQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1110 VIlDELGRGTst~DG~AIA~A~~~-~~~l~~~~~~~th~~~~ 1150 (1162)
.+|||==.--+|.--..+-..+.+ +.+..-+..++||.+.-
T Consensus 170 LLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~ 211 (263)
T COG1101 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMED 211 (263)
T ss_pred EEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHH
Confidence 999995444343333333334444 45566678888998754
No 393
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.50 E-value=0.032 Score=54.91 Aligned_cols=68 Identities=24% Similarity=0.341 Sum_probs=40.9
Q ss_pred EEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcC---CC
Q 001077 1030 ILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSA---TR 1106 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~A---T~ 1106 (1162)
++|+||.+.||||+.|.+|-. +|. -|..+...+.... ++......+..+++.+ ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~-----l~~--------------~~~~i~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~ 58 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY-----LGF--------------PFIEIDGSELISS---YAGDSEQKIRDFFKKAKKSAK 58 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH-----TTS--------------EEEEEETTHHHTS---STTHHHHHHHHHHHHHHHTST
T ss_pred CEEECcCCCCeeHHHHHHHhh-----ccc--------------ccccccccccccc---ccccccccccccccccccccc
Confidence 589999999999999998844 331 1444444443322 1222222333334332 24
Q ss_pred CcEEEEcCCCCCC
Q 001077 1107 NSLVVLDELGRGT 1119 (1162)
Q Consensus 1107 ~SLVIlDELGRGT 1119 (1162)
+++++|||+..-.
T Consensus 59 ~~vl~iDe~d~l~ 71 (132)
T PF00004_consen 59 PCVLFIDEIDKLF 71 (132)
T ss_dssp SEEEEEETGGGTS
T ss_pred ceeeeeccchhcc
Confidence 6999999987643
No 394
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.49 E-value=0.1 Score=54.91 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=30.9
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
.....|+|-||-=-.-++.--.-|-.-..++..+..+++++||=..
T Consensus 153 V~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~ 198 (223)
T COG2884 153 VNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE 198 (223)
T ss_pred ccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH
Confidence 3567788999975544544333444444557778889999999763
No 395
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.44 E-value=0.023 Score=67.69 Aligned_cols=84 Identities=18% Similarity=0.304 Sum_probs=51.0
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHH---cCCcccCCccccCCcceee--e-ecCCccchhhcccchHHHHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQ---VGADVPAEIFEISPVDRIF--V-RMGAKDHIMAGQSTFLTELSETALML 1101 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQ---iG~fVPA~~a~l~i~DrIf--T-RIGa~D~i~~g~STFmvEM~Eta~IL 1101 (1162)
.++.|.|||++||||+|+-+|-..++.+ -+.++.++..+++.++.+. . ++|-.-..... -.+....+
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~-------~~dl~~al 264 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKD-------IADLQLML 264 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCC-------HHHHHHHH
Confidence 5799999999999999998886555433 2345566666665555431 1 11211110000 11233445
Q ss_pred hcCCCCcEEEEcCCCCC
Q 001077 1102 SSATRNSLVVLDELGRG 1118 (1162)
Q Consensus 1102 ~~AT~~SLVIlDELGRG 1118 (1162)
.......+||||..||.
T Consensus 265 ~~l~~~d~VLIDTaGrs 281 (420)
T PRK14721 265 HELRGKHMVLIDTVGMS 281 (420)
T ss_pred HHhcCCCEEEecCCCCC
Confidence 56677889999997665
No 396
>PLN03140 ABC transporter G family member; Provisional
Probab=95.35 E-value=0.017 Score=79.14 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=34.3
Q ss_pred CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhh
Q 001077 1105 TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFI 1148 (1162)
Q Consensus 1105 T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~ 1148 (1162)
++.+++++||.=+|=+..--.-|...+-.+.+ ...+++++||..
T Consensus 353 ~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp 397 (1470)
T PLN03140 353 GPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQP 397 (1470)
T ss_pred CCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCC
Confidence 45689999999999998888777776666654 456788888864
No 397
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.32 E-value=0.032 Score=61.97 Aligned_cols=102 Identities=21% Similarity=0.251 Sum_probs=63.5
Q ss_pred eEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCCCCc
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNS 1108 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~S 1108 (1162)
.++|+||.+.|||+++..+|-.. .+.|.-| +|.. +.|=+..=.++|...-.....+++....-+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l--~~~g~~v------------~~it--~~~l~~~l~~~~~~~~~~~~~~l~~l~~~d 164 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNEL--LLRGKSV------------LIIT--VADIMSAMKDTFSNSETSEEQLLNDLSNVD 164 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH--HhcCCeE------------EEEE--HHHHHHHHHHHHhhccccHHHHHHHhccCC
Confidence 58999999999999999887653 3445322 1111 112111122233210011235666667888
Q ss_pred EEEEcCCCCCCChhhHHHHHHHHHHhhcc-cCceEEEeh
Q 001077 1109 LVVLDELGRGTSTSDGQAIAVFSSGFQSL-AGSQFLSTL 1146 (1162)
Q Consensus 1109 LVIlDELGRGTst~DG~AIA~A~~~~~~l-~~~~~~~th 1146 (1162)
|+||||+|.-..+..+..+-+.+...... ...++++|-
T Consensus 165 lLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSN 203 (244)
T PRK07952 165 LLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTN 203 (244)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCC
Confidence 99999999977777777888888886553 345666654
No 398
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.31 E-value=0.046 Score=60.06 Aligned_cols=56 Identities=16% Similarity=0.115 Sum_probs=36.1
Q ss_pred HHHHHHHHh-cCCCCcEEEEcCCCCCCChhhHHHHHHHHHH-hhcccCceEEEehhhh
Q 001077 1094 LSETALMLS-SATRNSLVVLDELGRGTSTSDGQAIAVFSSG-FQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1094 M~Eta~IL~-~AT~~SLVIlDELGRGTst~DG~AIA~A~~~-~~~l~~~~~~~th~~~ 1149 (1162)
|.+=..|.+ -++...++||||-.--=+..-..-+---+.. ..+...++++.||=+.
T Consensus 135 MrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~ 192 (248)
T COG1116 135 MRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD 192 (248)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 444344444 3688899999998865554444444333443 4556788999999773
No 399
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=95.30 E-value=0.066 Score=68.92 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=26.1
Q ss_pred ccccceecCCCCCcceEEEEccCCCChhHHHHHHH
Q 001077 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1014 fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1162)
.|=+|+.+.-. .+..+.|+|||++||||+++.++
T Consensus 495 ~vL~~isl~i~-~Ge~vaIvG~SGsGKSTLl~lL~ 528 (711)
T TIGR00958 495 PVLKGLTFTLH-PGEVVALVGPSGSGKSTVAALLQ 528 (711)
T ss_pred ccccCceEEEc-CCCEEEEECCCCCCHHHHHHHHH
Confidence 45556666432 34679999999999999999987
No 400
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.29 E-value=0.034 Score=65.66 Aligned_cols=82 Identities=27% Similarity=0.276 Sum_probs=46.7
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHc---CCcccCCccccCCcceeeeecCC-ccchhhcccchHHHHHHHHHHHh
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQV---GADVPAEIFEISPVDRIFVRMGA-KDHIMAGQSTFLTELSETALMLS 1102 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQi---G~fVPA~~a~l~i~DrIfTRIGa-~D~i~~g~STFmvEM~Eta~IL~ 1102 (1162)
..+++|+||++.||||++.|+|... |+- .+||-.+...-. +..-..|+|. .|++.--..+.+.++. ..+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~--a~~g~~VlYvs~EEs~~q-i~~Ra~rlg~~~~~l~l~~e~~le~I~---~~i~ 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARL--AKRGGKVLYVSGEESPEQ-IKLRADRLGISTENLYLLAETNLEDIL---ASIE 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCcCHHH-HHHHHHHcCCCcccEEEEccCcHHHHH---HHHH
Confidence 4689999999999999999998543 443 356655532100 0011224443 2333222223333333 3333
Q ss_pred cCCCCcEEEEcCC
Q 001077 1103 SATRNSLVVLDEL 1115 (1162)
Q Consensus 1103 ~AT~~SLVIlDEL 1115 (1162)
.....+||||++
T Consensus 156 -~~~~~lVVIDSI 167 (372)
T cd01121 156 -ELKPDLVIIDSI 167 (372)
T ss_pred -hcCCcEEEEcch
Confidence 246679999997
No 401
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=95.28 E-value=0.017 Score=79.08 Aligned_cols=45 Identities=9% Similarity=0.059 Sum_probs=35.6
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFI 1148 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~ 1148 (1162)
++..+++++||.-+|=++..-.-|...+-++.+ ...+++++||..
T Consensus 225 ~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~ 270 (1394)
T TIGR00956 225 LGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQC 270 (1394)
T ss_pred HhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCC
Confidence 356789999999999998888777777766655 356788899975
No 402
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=95.23 E-value=0.075 Score=63.21 Aligned_cols=127 Identities=20% Similarity=0.267 Sum_probs=81.1
Q ss_pred cccccc-eecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCc-------------------cccCCcce
Q 001077 1013 EFVPND-ITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-------------------FEISPVDR 1072 (1162)
Q Consensus 1013 ~fVPND-i~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~-------------------a~l~i~Dr 1072 (1162)
.++.|| +.|+- ....++.|-|-|++||||||+.+. |.|.|-+. .-|+.|-+
T Consensus 16 ~~~And~V~l~v-~~GeIHaLLGENGAGKSTLm~iL~--------G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQ 86 (501)
T COG3845 16 GVVANDDVSLSV-KKGEIHALLGENGAGKSTLMKILF--------GLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQ 86 (501)
T ss_pred CEEecCceeeee-cCCcEEEEeccCCCCHHHHHHHHh--------CcccCCcceEEECCEEeccCCHHHHHHcCCcEEee
Confidence 466655 45542 234689999999999999999987 99988543 23555555
Q ss_pred eee---ecCCccchhhcc-cch---------HHHHHH------------------------HHHHHhc-CCCCcEEEEcC
Q 001077 1073 IFV---RMGAKDHIMAGQ-STF---------LTELSE------------------------TALMLSS-ATRNSLVVLDE 1114 (1162)
Q Consensus 1073 IfT---RIGa~D~i~~g~-STF---------mvEM~E------------------------ta~IL~~-AT~~SLVIlDE 1114 (1162)
-|. .+-..+||.-|. +.. -.++.+ =-.||+. .....|+||||
T Consensus 87 HF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDE 166 (501)
T COG3845 87 HFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDE 166 (501)
T ss_pred ccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcC
Confidence 443 333445655554 111 112222 2334443 24567999999
Q ss_pred CCCCCChhhHHHHHHHHHHhhcccCceEEEehhh
Q 001077 1115 LGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFI 1148 (1162)
Q Consensus 1115 LGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~ 1148 (1162)
-=.==++.+=-.+-..+-.+..-..+++++||=+
T Consensus 167 PTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL 200 (501)
T COG3845 167 PTAVLTPQEADELFEILRRLAAEGKTIIFITHKL 200 (501)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH
Confidence 9555556666666665666888888999999966
No 403
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=95.18 E-value=0.51 Score=60.88 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=30.4
Q ss_pred CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccc
Q 001077 1105 TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1105 T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~ 1153 (1162)
....++||||--.+=+...-..|-.++..+ ...+++++||-......
T Consensus 628 ~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~~~~ 674 (708)
T TIGR01193 628 TDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSVAKQ 674 (708)
T ss_pred hCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHHHHc
Confidence 567899999976666655444454444432 24678999998844333
No 404
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=95.12 E-value=0.086 Score=62.82 Aligned_cols=22 Identities=45% Similarity=0.693 Sum_probs=19.8
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
+.-++|||||++|||++-|-+|
T Consensus 508 G~hLLItGPNGCGKSSLfRILg 529 (728)
T KOG0064|consen 508 GMHLLITGPNGCGKSSLFRILG 529 (728)
T ss_pred CceEEEECCCCccHHHHHHHHh
Confidence 3458999999999999999888
No 405
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.08 E-value=0.098 Score=56.10 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=33.9
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
|.+...+||||-...-++.--.-|---+.+++ ..-++++.||-+--
T Consensus 165 Av~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQ 210 (253)
T COG1117 165 AVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQ 210 (253)
T ss_pred hcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHH
Confidence 57788999999877666665556666666665 45579999998843
No 406
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=95.07 E-value=0.042 Score=65.69 Aligned_cols=127 Identities=20% Similarity=0.253 Sum_probs=77.8
Q ss_pred cccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHH--
Q 001077 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLT-- 1092 (1162)
Q Consensus 1015 VPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmv-- 1092 (1162)
+=+++.+|-+-..| +-|-|||+.||||+||.+.- -+.-.+|.-.|-..+.|+.+. -+.+..-++-.--++||.
T Consensus 405 iy~~l~fgid~~sr-vAlVGPNG~GKsTLlKl~~g-dl~p~~G~vs~~~H~~~~~y~---Qh~~e~ldl~~s~le~~~~~ 479 (614)
T KOG0927|consen 405 IYKKLNFGIDLDSR-VALVGPNGAGKSTLLKLITG-DLQPTIGMVSRHSHNKLPRYN---QHLAEQLDLDKSSLEFMMPK 479 (614)
T ss_pred hhhhhhcccCcccc-eeEecCCCCchhhhHHHHhh-ccccccccccccccccchhhh---hhhHhhcCcchhHHHHHHHh
Confidence 34455555322233 67889999999999998762 234556666666666666221 222222233333344443
Q ss_pred -----HHHHHHHHHhc-----------------------------CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhccc
Q 001077 1093 -----ELSETALMLSS-----------------------------ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLA 1138 (1162)
Q Consensus 1093 -----EM~Eta~IL~~-----------------------------AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~ 1138 (1162)
|..++..||.. -+..-|+||||--.|-+..-=-++|-|+-+ ..
T Consensus 480 ~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe---~~ 556 (614)
T KOG0927|consen 480 FPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINE---FP 556 (614)
T ss_pred ccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhc---cC
Confidence 33445555432 245679999999999887777788887764 55
Q ss_pred CceEEEehhhh
Q 001077 1139 GSQFLSTLFIK 1149 (1162)
Q Consensus 1139 ~~~~~~th~~~ 1149 (1162)
..+++.+|=++
T Consensus 557 Ggvv~vSHDfr 567 (614)
T KOG0927|consen 557 GGVVLVSHDFR 567 (614)
T ss_pred Cceeeeechhh
Confidence 67788887553
No 407
>PHA00729 NTP-binding motif containing protein
Probab=95.05 E-value=0.018 Score=62.78 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.3
Q ss_pred eEEEEccCCCChhHHHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
-++|||+.|.||||+...+|-.+
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999988654
No 408
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.05 E-value=0.15 Score=58.83 Aligned_cols=96 Identities=18% Similarity=0.261 Sum_probs=61.8
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHH------HHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSET------ALML 1101 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Et------a~IL 1101 (1162)
+-++|+||-|.|||.++..+|--.+ +-|.-| +|..+ ++|+.+|... ...+
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~v------------~~~~~----------~~l~~~lk~~~~~~~~~~~l 212 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELA--KKGVSS------------TLLHF----------PEFIRELKNSISDGSVKEKI 212 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--HcCCCE------------EEEEH----------HHHHHHHHHHHhcCcHHHHH
Confidence 3599999999999999997776544 556322 22222 1344444432 4566
Q ss_pred hcCCCCcEEEEcCCCCCCChhhHH-HHHHHHHHhhc-ccCceEEEehh
Q 001077 1102 SSATRNSLVVLDELGRGTSTSDGQ-AIAVFSSGFQS-LAGSQFLSTLF 1147 (1162)
Q Consensus 1102 ~~AT~~SLVIlDELGRGTst~DG~-AIA~A~~~~~~-l~~~~~~~th~ 1147 (1162)
+....-.|+||||||.-..+..+. -|-..+..+.. ....+|++|-|
T Consensus 213 ~~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 213 DAVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred HHhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 667788999999999886665554 35555655542 34456666644
No 409
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=95.04 E-value=0.033 Score=76.50 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=33.9
Q ss_pred CCCC-cEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRN-SLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~-SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+++. +++||||--.|-+..--..|...+..+.....+++++||-..
T Consensus 917 ~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~ 963 (1394)
T TIGR00956 917 VAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPS 963 (1394)
T ss_pred HcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 3445 699999999998877666666656555555678999999764
No 410
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=95.02 E-value=0.098 Score=72.72 Aligned_cols=48 Identities=15% Similarity=0.092 Sum_probs=34.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc--ccCceEEEehhhhcc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS--LAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~--l~~~~~~~th~~~~~ 1151 (1162)
..+..++||||.-.+-++.-+..|-..+..... ...+++++||-....
T Consensus 776 ~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l 825 (1522)
T TIGR00957 776 YSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYL 825 (1522)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhh
Confidence 356789999999999888877777665543211 235789999987443
No 411
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=95.00 E-value=0.1 Score=54.08 Aligned_cols=44 Identities=16% Similarity=0.133 Sum_probs=34.4
Q ss_pred CcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1107 NSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1107 ~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
.-|.|+||--.|-+...-.|+-.-+.++-.-..+++++.|-.++
T Consensus 151 ~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh 194 (248)
T COG4138 151 GQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH 194 (248)
T ss_pred ceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh
Confidence 45999999988888777777766666677778889999987644
No 412
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.98 E-value=0.12 Score=57.35 Aligned_cols=25 Identities=40% Similarity=0.485 Sum_probs=22.5
Q ss_pred eEEEEccCCCChhHHHHHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVIL 1053 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivIL 1053 (1162)
+-+|.||.+.||||++-|+|+.+..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~ 27 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMAL 27 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhc
Confidence 5789999999999999999998753
No 413
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=94.87 E-value=0.099 Score=67.15 Aligned_cols=47 Identities=6% Similarity=-0.002 Sum_probs=31.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~ 1151 (1162)
.....++||||--.|-+...-..|..++.++. ...+++++||.....
T Consensus 609 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~ 655 (694)
T TIGR01846 609 VGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLSTV 655 (694)
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHHH
Confidence 35778999999866665555455555554442 246789999988443
No 414
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.85 E-value=0.064 Score=57.09 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=19.2
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
..++|+|||++||||+||.++
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~ 46 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALL 46 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999866
No 415
>PRK09087 hypothetical protein; Validated
Probab=94.84 E-value=0.045 Score=60.26 Aligned_cols=81 Identities=12% Similarity=0.224 Sum_probs=48.6
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCC-cccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCC
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGA-DVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSAT 1105 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~-fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT 1105 (1162)
.+.++|+||-++|||++++..| ++.|+ |||+. .|..|..+ .+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~-----~~~~~~~i~~~-------------------------~~~~~~~~---~~~--- 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWR-----EKSDALLIHPN-------------------------EIGSDAAN---AAA--- 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHH-----HhcCCEEecHH-------------------------HcchHHHH---hhh---
Confidence 3568999999999999999655 23342 44432 12222221 111
Q ss_pred CCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEeh
Q 001077 1106 RNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTL 1146 (1162)
Q Consensus 1106 ~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th 1146 (1162)
..+|+||++.....+.+ ++..-+-.+.+....+++++.
T Consensus 88 -~~~l~iDDi~~~~~~~~--~lf~l~n~~~~~g~~ilits~ 125 (226)
T PRK09087 88 -EGPVLIEDIDAGGFDET--GLFHLINSVRQAGTSLLMTSR 125 (226)
T ss_pred -cCeEEEECCCCCCCCHH--HHHHHHHHHHhCCCeEEEECC
Confidence 14999999987543333 355544445555566777665
No 416
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.83 E-value=0.025 Score=66.87 Aligned_cols=92 Identities=17% Similarity=0.304 Sum_probs=53.8
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHH--cCC---cccCCccccCCccee--eee-cCCccchhhcccchHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQ--VGA---DVPAEIFEISPVDRI--FVR-MGAKDHIMAGQSTFLTELSETA 1098 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQ--iG~---fVPA~~a~l~i~DrI--fTR-IGa~D~i~~g~STFmvEM~Eta 1098 (1162)
++++++.||||.||||.+..+|....+.+ -|- +|-++..+.+-.+++ |.+ +|.. +.... + ..++.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvp--v~~~~-~----~~~l~ 246 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP--VKAIE-S----FKDLK 246 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcc--eEeeC-c----HHHHH
Confidence 46899999999999999999986655542 132 333443333333221 111 2221 11111 1 13455
Q ss_pred HHHhcCCCCcEEEEcCCCCCCChhhHHHH
Q 001077 1099 LMLSSATRNSLVVLDELGRGTSTSDGQAI 1127 (1162)
Q Consensus 1099 ~IL~~AT~~SLVIlDELGRGTst~DG~AI 1127 (1162)
..|.......+||||+.||.. .|-.-|
T Consensus 247 ~~L~~~~~~DlVLIDTaGr~~--~~~~~l 273 (388)
T PRK12723 247 EEITQSKDFDLVLVDTIGKSP--KDFMKL 273 (388)
T ss_pred HHHHHhCCCCEEEEcCCCCCc--cCHHHH
Confidence 566667788999999999975 354334
No 417
>PRK14974 cell division protein FtsY; Provisional
Probab=94.72 E-value=0.079 Score=61.62 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=25.3
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCC
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~ 1058 (1162)
+++++++|||++||||.++-+|. .+.+-|.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~--~l~~~g~ 169 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAY--YLKKNGF 169 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH--HHHHcCC
Confidence 57899999999999999999984 4567673
No 418
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=94.71 E-value=0.026 Score=59.86 Aligned_cols=31 Identities=32% Similarity=0.530 Sum_probs=23.8
Q ss_pred cceecCCCCCcceEEEEccCCCChhHHHHHHHHHH
Q 001077 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1017 NDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
-++.++ +.+.+|+|||++||||+|..+.++.
T Consensus 13 ~~i~f~----~g~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 13 LEIDFS----PGLNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp EEEE------SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEcC----CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 345553 3589999999999999998887665
No 419
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.59 E-value=0.024 Score=70.95 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=20.7
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
.++++|+||+++||||+++.+|=
T Consensus 110 ~~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 110 KRILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999883
No 420
>PF05729 NACHT: NACHT domain
Probab=94.54 E-value=0.053 Score=55.50 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=21.3
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVI 1052 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivI 1052 (1162)
|+++|+|+-|+||||+|+.++....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH
Confidence 5799999999999999998775443
No 421
>PRK08116 hypothetical protein; Validated
Probab=94.52 E-value=0.15 Score=57.72 Aligned_cols=96 Identities=22% Similarity=0.260 Sum_probs=56.1
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHH---------HH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSE---------TA 1098 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~E---------ta 1098 (1162)
..++|+||.|.|||.++..+|--.+ .+ |..| +|..+ +.|+.++.. ..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~-~~-~~~v------------~~~~~----------~~ll~~i~~~~~~~~~~~~~ 170 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI-EK-GVPV------------IFVNF----------PQLLNRIKSTYKSSGKEDEN 170 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH-Hc-CCeE------------EEEEH----------HHHHHHHHHHHhccccccHH
Confidence 4589999999999999998775543 23 5322 12211 112222211 12
Q ss_pred HHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehh
Q 001077 1099 LMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLF 1147 (1162)
Q Consensus 1099 ~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~ 1147 (1162)
.+++....-.|+|||+||.--.+.-.....+.+..... ....++++|-+
T Consensus 171 ~~~~~l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 171 EIIRSLVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred HHHHHhcCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 34454556679999999875555555555666655322 23356777654
No 422
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=94.50 E-value=0.022 Score=60.27 Aligned_cols=135 Identities=24% Similarity=0.255 Sum_probs=85.2
Q ss_pred cccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHH--------------------HHHHcC-CcccCCccccCCcc
Q 001077 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVG-ADVPAEIFEISPVD 1071 (1162)
Q Consensus 1013 ~fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLiv--------------------ILAQiG-~fVPA~~a~l~i~D 1071 (1162)
..|-||+.|.-. ...++-|-|||++||||.--+|.=++ -=|++| .|+|-+.
T Consensus 17 r~Vv~~Vsl~v~-~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~------- 88 (243)
T COG1137 17 RKVVNDVSLEVN-SGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEA------- 88 (243)
T ss_pred eeeeeeeeEEEc-CCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccc-------
Confidence 467788888643 35689999999999999755443111 126666 3666543
Q ss_pred eeeeecCCccchhhcccchH------------HHH------------------------HHHHHHHhcCCCCcEEEEcCC
Q 001077 1072 RIFVRMGAKDHIMAGQSTFL------------TEL------------------------SETALMLSSATRNSLVVLDEL 1115 (1162)
Q Consensus 1072 rIfTRIGa~D~i~~g~STFm------------vEM------------------------~Eta~IL~~AT~~SLVIlDEL 1115 (1162)
.||-.+-..|||+.=.-.+. .+| .|+|..| |+..+++||||-
T Consensus 89 SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaL--a~~P~fiLLDEP 166 (243)
T COG1137 89 SIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARAL--AANPKFILLDEP 166 (243)
T ss_pred hHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHH--hcCCCEEEecCC
Confidence 25555555555543221111 111 1245544 568899999999
Q ss_pred CCCCChhhHHHHHHHHHHhhcccCceEEEehhh--hcccccceE
Q 001077 1116 GRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFI--KCNAVDCFQ 1157 (1162)
Q Consensus 1116 GRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~--~~~~~~~~~ 1157 (1162)
..|-+|.-=.-|=.-+.++....--++++-|-- |+...+.-|
T Consensus 167 FAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaY 210 (243)
T COG1137 167 FAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAY 210 (243)
T ss_pred ccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEE
Confidence 999988665556666677777777788877765 454444433
No 423
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.48 E-value=0.077 Score=56.19 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=58.3
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCCCC
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRN 1107 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~ 1107 (1162)
.-++|+||-+.|||.+.-.+|--++. -|..| .+--+..++.++-...+ .+ + ...+++....-
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~--~g~~v-----~f~~~~~L~~~l~~~~~--~~--~-------~~~~~~~l~~~ 109 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIR--KGYSV-----LFITASDLLDELKQSRS--DG--S-------YEELLKRLKRV 109 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH--TT--E-----EEEEHHHHHHHHHCCHC--CT--T-------HCHHHHHHHTS
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhcc--CCcce-----eEeecCceecccccccc--cc--c-------hhhhcCccccc
Confidence 45999999999999997777655443 45332 11112223333322211 11 0 11233333456
Q ss_pred cEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhh
Q 001077 1108 SLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFI 1148 (1162)
Q Consensus 1108 SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~ 1148 (1162)
.|+||||||-...+..+..+-+-+.....-...++++|-+-
T Consensus 110 dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 110 DLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp SCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred cEecccccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 89999999998877777777777777555445677777653
No 424
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.43 E-value=0.045 Score=61.45 Aligned_cols=22 Identities=45% Similarity=0.726 Sum_probs=19.6
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
..+++|+||||+||||++|.++
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~ 64 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLL 64 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 3479999999999999999874
No 425
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.41 E-value=0.12 Score=59.66 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=18.9
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
..++|+|||++||||+|+.++
T Consensus 145 ~~ili~G~tGsGKTTll~al~ 165 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLV 165 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999998765
No 426
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.40 E-value=0.032 Score=63.55 Aligned_cols=82 Identities=23% Similarity=0.468 Sum_probs=46.2
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcC----CcccCCccccCCccee--eeec-CCccchhhcccchHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG----ADVPAEIFEISPVDRI--FVRM-GAKDHIMAGQSTFLTELSETAL 1099 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG----~fVPA~~a~l~i~DrI--fTRI-Ga~D~i~~g~STFmvEM~Eta~ 1099 (1162)
.++++|.||+++||||++..+|......+ | ++|.++..+++.++.+ |.++ |..=... ..-.++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~-g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~-------~~~~~l~~ 265 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEH-GNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVA-------RDPKELRK 265 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHc-CCCeEEEEECCccchhHHHHHHHHHHHhCCceecc-------CCHHHHHH
Confidence 46899999999999999987664443321 4 4566655433333322 1111 1000000 01123455
Q ss_pred HHhcCCCCcEEEEcCCC
Q 001077 1100 MLSSATRNSLVVLDELG 1116 (1162)
Q Consensus 1100 IL~~AT~~SLVIlDELG 1116 (1162)
.|+......+||||..|
T Consensus 266 ~l~~~~~~d~vliDt~G 282 (282)
T TIGR03499 266 ALDRLRDKDLILIDTAG 282 (282)
T ss_pred HHHHccCCCEEEEeCCC
Confidence 56665667899999877
No 427
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.32 E-value=0.078 Score=64.27 Aligned_cols=85 Identities=28% Similarity=0.238 Sum_probs=47.1
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHH-HcCCcccCCccccCCcceeeeecCC-ccchhhcccchHHHHHHHHHHHhcC
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILA-QVGADVPAEIFEISPVDRIFVRMGA-KDHIMAGQSTFLTELSETALMLSSA 1104 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILA-QiG~fVPA~~a~l~i~DrIfTRIGa-~D~i~~g~STFmvEM~Eta~IL~~A 1104 (1162)
..+++|+||.+.||||++.|++...... .-.+||-++...-.+..+ ..|+|. .+++.--..+.+. ++...++.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~r-a~rlg~~~~~l~~~~e~~l~---~i~~~i~~- 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLR-AERLGLPSDNLYLLAETNLE---AILATIEE- 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHH-HHHcCCChhcEEEeCCCCHH---HHHHHHHh-
Confidence 4689999999999999999998764421 122677766422111111 233443 1222111112222 33333433
Q ss_pred CCCcEEEEcCCC
Q 001077 1105 TRNSLVVLDELG 1116 (1162)
Q Consensus 1105 T~~SLVIlDELG 1116 (1162)
....+||||++-
T Consensus 155 ~~~~lVVIDSIq 166 (446)
T PRK11823 155 EKPDLVVIDSIQ 166 (446)
T ss_pred hCCCEEEEechh
Confidence 355799999975
No 428
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.29 E-value=0.093 Score=59.11 Aligned_cols=42 Identities=29% Similarity=0.360 Sum_probs=30.0
Q ss_pred CCCCCcceEEEEccCCCChhHHHHHHHHHHHHH--HcCCcccCC
Q 001077 1022 GGHGNASFILLTGPNMGGKSTLLRQVCLAVILA--QVGADVPAE 1063 (1162)
Q Consensus 1022 ~~~~~~~~~IITGPNMgGKST~LRqvaLivILA--QiG~fVPA~ 1063 (1162)
++-....+++|+||.+.||||++.|++...+.. +-.+|+-.+
T Consensus 25 gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E 68 (271)
T cd01122 25 KGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 433345689999999999999999998766543 233455444
No 429
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.28 E-value=0.17 Score=52.87 Aligned_cols=34 Identities=35% Similarity=0.412 Sum_probs=25.8
Q ss_pred eEEEEccCCCChhHHHHHHHHHHHHHHcCC---cccCCc
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGA---DVPAEI 1064 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~---fVPA~~ 1064 (1162)
+++++||.++||||+++.++. .+++.|. +|-++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~--~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL--YLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEEcCC
Confidence 689999999999999988775 4666673 344443
No 430
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.22 E-value=0.066 Score=67.92 Aligned_cols=82 Identities=22% Similarity=0.403 Sum_probs=53.0
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcC----CcccCCccccCCcceeeeecCCccchh-----hcccchH-HHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG----ADVPAEIFEISPVDRIFVRMGAKDHIM-----AGQSTFL-TELSE 1096 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG----~fVPA~~a~l~i~DrIfTRIGa~D~i~-----~g~STFm-vEM~E 1096 (1162)
.+++++.|||++||||.+.-+|-...+ +-| .+|.++.. |+|+.+.+. .|...|. ..-.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~-~~G~kkV~lit~Dt~----------RigA~eQL~~~a~~~gvpv~~~~~~~~ 253 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVA-REGADQLALLTTDSF----------RIGALEQLRIYGRILGVPVHAVKDAAD 253 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHH-HcCCCeEEEecCccc----------chHHHHHHHHHHHhCCCCccccCCHHH
Confidence 358999999999999999988865433 233 24455544 455544332 1211211 12345
Q ss_pred HHHHHhcCCCCcEEEEcCCCCCC
Q 001077 1097 TALMLSSATRNSLVVLDELGRGT 1119 (1162)
Q Consensus 1097 ta~IL~~AT~~SLVIlDELGRGT 1119 (1162)
+...|.......+||||=-||.=
T Consensus 254 l~~al~~~~~~D~VLIDTAGRs~ 276 (767)
T PRK14723 254 LRFALAALGDKHLVLIDTVGMSQ 276 (767)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCc
Confidence 66777777788999999999864
No 431
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.17 E-value=0.15 Score=56.51 Aligned_cols=89 Identities=21% Similarity=0.212 Sum_probs=51.1
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcCC---cccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcC
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGA---DVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSA 1104 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~---fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~A 1104 (1162)
+.++|+||-+.|||++++.+|-.+. +-|. |++++.. .++..|+ ...+.+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~~----------------------~~~~~~~---~~~~~~- 97 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDKR----------------------AWFVPEV---LEGMEQ- 97 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHHH----------------------hhhhHHH---HHHhhh-
Confidence 5689999999999999998886543 2242 3333210 0122222 222332
Q ss_pred CCCcEEEEcCCCCCCChhhH-HHHHHHHHHhhcccC-ceEEEeh
Q 001077 1105 TRNSLVVLDELGRGTSTSDG-QAIAVFSSGFQSLAG-SQFLSTL 1146 (1162)
Q Consensus 1105 T~~SLVIlDELGRGTst~DG-~AIA~A~~~~~~l~~-~~~~~th 1146 (1162)
..||+|||+++-+...+. .++-..+-.+.+... .++++|.
T Consensus 98 --~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~ 139 (235)
T PRK08084 98 --LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGD 139 (235)
T ss_pred --CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCC
Confidence 369999999987654332 344444444444333 4666664
No 432
>PRK04195 replication factor C large subunit; Provisional
Probab=94.16 E-value=0.13 Score=63.08 Aligned_cols=98 Identities=20% Similarity=0.202 Sum_probs=51.1
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcC-C
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSA-T 1105 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~A-T 1105 (1162)
.+.++|+||.|.||||+++.+|- ++|+. +..+.++|... ...+...+.+.+..-.-. .
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~-----el~~~--------------~ielnasd~r~--~~~i~~~i~~~~~~~sl~~~ 97 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAN-----DYGWE--------------VIELNASDQRT--ADVIERVAGEAATSGSLFGA 97 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH-----HcCCC--------------EEEEccccccc--HHHHHHHHHHhhccCcccCC
Confidence 45799999999999999998763 44532 22333444211 111111111111110111 3
Q ss_pred CCcEEEEcCCCCCCChhhHHHHHHHHHH-hhcccCceEEEeh
Q 001077 1106 RNSLVVLDELGRGTSTSDGQAIAVFSSG-FQSLAGSQFLSTL 1146 (1162)
Q Consensus 1106 ~~SLVIlDELGRGTst~DG~AIA~A~~~-~~~l~~~~~~~th 1146 (1162)
.+.+|||||+..=+...|.-++ .++.. +......++++|.
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~-~aL~~~l~~~~~~iIli~n 138 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGA-RAILELIKKAKQPIILTAN 138 (482)
T ss_pred CCeEEEEecCcccccccchhHH-HHHHHHHHcCCCCEEEecc
Confidence 6889999999876554443233 23333 3344445666553
No 433
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.06 E-value=0.064 Score=65.89 Aligned_cols=30 Identities=33% Similarity=0.597 Sum_probs=24.3
Q ss_pred CcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcc
Q 001077 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1162)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fV 1060 (1162)
..+++|||||.|+||||.+|.+| -.+|.-|
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La-----~elg~~v 73 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLA-----KELGFEV 73 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHH-----HHhCCee
Confidence 35799999999999999999876 4557633
No 434
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.04 E-value=0.038 Score=58.13 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.0
Q ss_pred ceEEEEccCCCChhHHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1162)
++++|+||+++||||++++++-.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999987643
No 435
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=94.02 E-value=0.12 Score=71.19 Aligned_cols=52 Identities=6% Similarity=0.020 Sum_probs=35.0
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhcccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKCNAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~~~~~~ 1155 (1162)
.....++||||--.+-++.--..|-.++..+.. ...+++++||........+
T Consensus 595 l~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD 647 (1466)
T PTZ00265 595 IRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYAN 647 (1466)
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCC
Confidence 356789999998777776555555555555543 3568999999885433333
No 436
>PRK08727 hypothetical protein; Validated
Probab=93.98 E-value=0.2 Score=55.31 Aligned_cols=92 Identities=22% Similarity=0.288 Sum_probs=53.0
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCCCC
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRN 1107 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~ 1107 (1162)
..++|+||-+.|||.+++.+|-. +.+-|-. -+|..+.. |... ...+++.....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~------------~~y~~~~~----------~~~~---~~~~~~~l~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRS------------SAYLPLQA----------AAGR---LRDALEALEGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCc------------EEEEeHHH----------hhhh---HHHHHHHHhcC
Confidence 46999999999999999988765 3344521 12222111 1111 22345555666
Q ss_pred cEEEEcCCCCCCChhhH-HHHHHHHHHhhcccCceEEEeh
Q 001077 1108 SLVVLDELGRGTSTSDG-QAIAVFSSGFQSLAGSQFLSTL 1146 (1162)
Q Consensus 1108 SLVIlDELGRGTst~DG-~AIA~A~~~~~~l~~~~~~~th 1146 (1162)
.||||||++.-...... .++-..+....+....++++++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~ 134 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTAR 134 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 79999999986643332 3333323333333345777765
No 437
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=93.95 E-value=0.28 Score=58.24 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=36.4
Q ss_pred cCceEEEeccCCCeEEeEEEEeecCCC------CeEEEEccCCc---hhhcccC
Q 001077 106 LRKRIRVYWPLDKAWYEGCVKSFDKEC------NKHLVQYDDGE---DELLDLG 150 (1162)
Q Consensus 106 vg~rv~v~wp~d~~~y~g~v~~~~~~~------~~h~v~Yddg~---~e~l~l~ 150 (1162)
||.+|.++|..|..||.++|....... ..+.|.|..=+ +|||..+
T Consensus 56 VGekVla~~~~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~g~nrRlDEWV~~~ 109 (450)
T PLN00104 56 VGTRVMCRWRFDGKYHPVKVIERRRGGSGGPNDYEYYVHYTEFNRRLDEWVKLE 109 (450)
T ss_pred cCCEEEEEECCCCCEEEEEEEEEeccCCCCCCCceEEEEEecCCccHhhccCHh
Confidence 999999999999999999999988733 46889997544 5676544
No 438
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.88 E-value=0.042 Score=58.44 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=19.3
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
.+++|+|||++||||++|.++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~ 23 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALR 23 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999985
No 439
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.84 E-value=0.066 Score=56.85 Aligned_cols=122 Identities=21% Similarity=0.251 Sum_probs=58.8
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHH--cC---------CcccCCccccCCcceeeeecCCcc---c--hhh------
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQ--VG---------ADVPAEIFEISPVDRIFVRMGAKD---H--IMA------ 1085 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQ--iG---------~fVPA~~a~l~i~DrIfTRIGa~D---~--i~~------ 1085 (1162)
.+.+|+||-++||||++-+++..++..+ .| +|+.+|...-.+..|+..-.+..+ + +..
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~ 112 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGC 112 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecccccc
Confidence 5899999999999999999999888521 01 344444321111111111111111 0 111
Q ss_pred --------cccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCC--hhhHHHHHHHHHHhhc---ccCceEEEehhhh
Q 001077 1086 --------GQSTFLTELSETALMLSSATRNSLVVLDELGRGTS--TSDGQAIAVFSSGFQS---LAGSQFLSTLFIK 1149 (1162)
Q Consensus 1086 --------g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTs--t~DG~AIA~A~~~~~~---l~~~~~~~th~~~ 1149 (1162)
+....-..+.++...+.....-.|||||=|.+=+. ..+..+.+..+..+.. ..++.++.+||.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~ 189 (193)
T PF13481_consen 113 IRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEYGVAVILVHHTN 189 (193)
T ss_dssp E---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH--EEEEEEEE-
T ss_pred ceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 01112344566777777756678999997765333 2333333333333333 3456777777764
No 440
>PLN03130 ABC transporter C family member; Provisional
Probab=93.80 E-value=0.23 Score=69.26 Aligned_cols=45 Identities=9% Similarity=0.039 Sum_probs=31.2
Q ss_pred CCCcEEEEcCCCCCCChhhHHHHHHH-HHHhhcccCceEEEehhhhc
Q 001077 1105 TRNSLVVLDELGRGTSTSDGQAIAVF-SSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1105 T~~SLVIlDELGRGTst~DG~AIA~A-~~~~~~l~~~~~~~th~~~~ 1150 (1162)
....++||||.-.+=+..-+..|-.. +..+. ...+++++||...+
T Consensus 757 ~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~ 802 (1622)
T PLN03130 757 SNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHF 802 (1622)
T ss_pred CCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHhH
Confidence 45689999998888887777666432 22222 24688999998743
No 441
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.79 E-value=0.21 Score=55.18 Aligned_cols=39 Identities=10% Similarity=0.119 Sum_probs=30.1
Q ss_pred CcceEEEEccCCCChhHHHHHHHHHHHHH--HcCCcccCCc
Q 001077 1026 NASFILLTGPNMGGKSTLLRQVCLAVILA--QVGADVPAEI 1064 (1162)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivILA--QiG~fVPA~~ 1064 (1162)
...+++|+||.++||||++-|++...... +-.+|+-.+.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 35689999999999999999998777764 3345555544
No 442
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.74 E-value=0.095 Score=61.60 Aligned_cols=87 Identities=17% Similarity=0.254 Sum_probs=45.9
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCC---cccCCccccCCcceeee---ecCCccchhhcccchHHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGA---DVPAEIFEISPVDRIFV---RMGAKDHIMAGQSTFLTELSETALM 1100 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~---fVPA~~a~l~i~DrIfT---RIGa~D~i~~g~STFmvEM~Eta~I 1100 (1162)
.++++|.||||+||||++.-+|.. ++.-|- ++-|+..+++-++++-+ ++|.. -+. ..+ -.+|.+.-.-
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgip-v~v-~~d--~~~L~~aL~~ 314 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFE-VIA-VRD--EAAMTRALTY 314 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCc-EEe-cCC--HHHHHHHHHH
Confidence 467999999999999999999863 344452 33344333333333221 11100 000 000 1223222222
Q ss_pred HhcCCCCcEEEEcCCCCCC
Q 001077 1101 LSSATRNSLVVLDELGRGT 1119 (1162)
Q Consensus 1101 L~~AT~~SLVIlDELGRGT 1119 (1162)
++......+||||-.||--
T Consensus 315 lk~~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 315 FKEEARVDYILIDTAGKNY 333 (436)
T ss_pred HHhccCCCEEEEeCccccC
Confidence 2322356899999999944
No 443
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=93.72 E-value=0.066 Score=57.36 Aligned_cols=116 Identities=19% Similarity=0.162 Sum_probs=50.4
Q ss_pred eEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccc-cCCcceeeeecCCccc--hhhc-ccchHHHHHHHHHHHhcC
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFE-ISPVDRIFVRMGAKDH--IMAG-QSTFLTELSETALMLSSA 1104 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~-l~i~DrIfTRIGa~D~--i~~g-~STFmvEM~Eta~IL~~A 1104 (1162)
+.++||.+++|||.++-+..++-.|.. |..|-+. .. |. +|.|....+..=. +..- .-.|. +..+-.......
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~~-gr~V~tn-i~gL~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 77 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALKK-GRPVYTN-IPGLN-IEKIQPVLGYDIPTRLIDLSDPDFE-EDWDDPDDWRKL 77 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGGS----EEE---TTB--S--EEEE--TTT-S-----S--SSS-EEGGGHHHHTTS
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHhC-CCEEEEc-cCCcc-hhhhhhhccccccccccccccccch-hhhhhhhhhccc
Confidence 579999999999988776644443332 7776652 22 22 3344433221100 0000 00000 000111222333
Q ss_pred CCCcEEEEcCCCCCCChhhH-----HHHHHHHHHhhcccCceEEEehhh
Q 001077 1105 TRNSLVVLDELGRGTSTSDG-----QAIAVFSSGFQSLAGSQFLSTLFI 1148 (1162)
Q Consensus 1105 T~~SLVIlDELGRGTst~DG-----~AIA~A~~~~~~l~~~~~~~th~~ 1148 (1162)
..++|+||||.++==+.... -.+..+.+...+....++++|+..
T Consensus 78 ~~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~ 126 (193)
T PF05707_consen 78 PKGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSP 126 (193)
T ss_dssp GTT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-G
T ss_pred CCCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCH
Confidence 48999999998753322222 223344555677777899999876
No 444
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.64 E-value=0.14 Score=56.25 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=25.2
Q ss_pred CcceEEEEccCCCChhHHHHHHHHHHHHH
Q 001077 1026 NASFILLTGPNMGGKSTLLRQVCLAVILA 1054 (1162)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivILA 1054 (1162)
...++.|+||+++|||+++.|+++.+.+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~ 46 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLP 46 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCc
Confidence 35789999999999999999999876653
No 445
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=93.62 E-value=0.039 Score=54.51 Aligned_cols=28 Identities=21% Similarity=0.503 Sum_probs=21.3
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILA 1054 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILA 1054 (1162)
.++++|+||.++|||+++++++--.-..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~ 31 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAE 31 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHh
Confidence 4689999999999999999999766544
No 446
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.61 E-value=0.15 Score=55.69 Aligned_cols=26 Identities=38% Similarity=0.576 Sum_probs=21.9
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVI 1052 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivI 1052 (1162)
.+.++|+||-|.|||+++++++--..
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999885543
No 447
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.57 E-value=0.12 Score=62.08 Aligned_cols=82 Identities=22% Similarity=0.227 Sum_probs=53.0
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhc--ccchHHHHHHHHHHH---
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAG--QSTFLTELSETALML--- 1101 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g--~STFmvEM~Eta~IL--- 1101 (1162)
.++++||||-|+||||.++-+|=+. | +--.=.+.+++-+++-.-..++...+ .++|+.+|.+-..-.
T Consensus 110 ~~iLLltGPsGcGKSTtvkvLskel-----g---~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~ky 181 (634)
T KOG1970|consen 110 SRILLLTGPSGCGKSTTVKVLSKEL-----G---YQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKY 181 (634)
T ss_pred ceEEEEeCCCCCCchhHHHHHHHhh-----C---ceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhh
Confidence 4799999999999999999877432 2 22222344555566666566666666 577777765533222
Q ss_pred ----hcC----CCCcEEEEcCCC
Q 001077 1102 ----SSA----TRNSLVVLDELG 1116 (1162)
Q Consensus 1102 ----~~A----T~~SLVIlDELG 1116 (1162)
... |.+-|+|||||=
T Consensus 182 g~l~~~g~~~~~~~~liLveDLP 204 (634)
T KOG1970|consen 182 GSLQMSGDDLRTDKKLILVEDLP 204 (634)
T ss_pred chhhhcccccccCceEEEeeccc
Confidence 222 444499999985
No 448
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=93.54 E-value=0.29 Score=56.23 Aligned_cols=93 Identities=29% Similarity=0.405 Sum_probs=52.2
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcc------cCCccccCC--cce-----------eeeecCCccchhhcc
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV------PAEIFEISP--VDR-----------IFVRMGAKDHIMAGQ 1087 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fV------PA~~a~l~i--~Dr-----------IfTRIGa~D~i~~g~ 1087 (1162)
..+++|+||+++||||+++.++-. +.+-|.-| |......+- -|+ +|.|--+.-....|.
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~--~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGME--LRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGL 111 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccch
Confidence 578999999999999999998865 34446544 222111110 022 222221111122222
Q ss_pred cchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHH
Q 001077 1088 STFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQ 1125 (1162)
Q Consensus 1088 STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~ 1125 (1162)
+. ...++-.+|+. -.-.+||+|=.|.|.+..+-.
T Consensus 112 ~~---~~~~~~~~l~~-~g~D~viidT~G~~~~e~~i~ 145 (300)
T TIGR00750 112 SQ---ATRELILLLDA-AGYDVIIVETVGVGQSEVDIA 145 (300)
T ss_pred hH---HHHHHHHHHHh-CCCCEEEEeCCCCchhhhHHH
Confidence 21 12233344443 466899999999998887743
No 449
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.50 E-value=0.28 Score=55.99 Aligned_cols=69 Identities=20% Similarity=0.282 Sum_probs=40.9
Q ss_pred EEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchh---hcccchHHHHHHHHHHHhcCCC
Q 001077 1030 ILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIM---AGQSTFLTELSETALMLSSATR 1106 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~---~g~STFmvEM~Eta~IL~~AT~ 1106 (1162)
++|+||.|.||||+.|.+|-. +.+.|.. +.. -|..+... ++. -|.+. ..+..++..|..
T Consensus 61 vll~G~pGTGKT~lA~~ia~~--l~~~g~~-~~~---------~~v~v~~~-~l~~~~~g~~~-----~~~~~~~~~a~~ 122 (284)
T TIGR02880 61 MSFTGNPGTGKTTVALRMAQI--LHRLGYV-RKG---------HLVSVTRD-DLVGQYIGHTA-----PKTKEILKRAMG 122 (284)
T ss_pred EEEEcCCCCCHHHHHHHHHHH--HHHcCCc-ccc---------eEEEecHH-HHhHhhcccch-----HHHHHHHHHccC
Confidence 889999999999999988854 4455532 110 01111111 121 12221 234567777754
Q ss_pred CcEEEEcCCCC
Q 001077 1107 NSLVVLDELGR 1117 (1162)
Q Consensus 1107 ~SLVIlDELGR 1117 (1162)
.+++|||++.
T Consensus 123 -gvL~iDEi~~ 132 (284)
T TIGR02880 123 -GVLFIDEAYY 132 (284)
T ss_pred -cEEEEechhh
Confidence 7999999973
No 450
>PLN03232 ABC transporter C family member; Provisional
Probab=93.44 E-value=0.43 Score=66.44 Aligned_cols=46 Identities=7% Similarity=0.002 Sum_probs=31.1
Q ss_pred CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1105 TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1105 T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
....++||||.-.+=+..-+..|-..+..-.....+++++||...+
T Consensus 757 ~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~ 802 (1495)
T PLN03232 757 SNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHF 802 (1495)
T ss_pred cCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhh
Confidence 3567999999888888777776643332211234689999998744
No 451
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.29 E-value=0.19 Score=60.51 Aligned_cols=83 Identities=23% Similarity=0.340 Sum_probs=47.6
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcC---CcccCCccccCCcceeeeecCCccchhh-----cccch-HHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVG---ADVPAEIFEISPVDRIFVRMGAKDHIMA-----GQSTF-LTELSETA 1098 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG---~fVPA~~a~l~i~DrIfTRIGa~D~i~~-----g~STF-mvEM~Eta 1098 (1162)
++++|.||||+||||++-.+|....+.+-| ++|-++.. |+|+.+.+.. |...+ ...-.++.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~----------r~~a~eqL~~~a~~~~vp~~~~~~~~~l~ 291 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY----------RIGAVEQLKTYAKIMGIPVEVVYDPKELA 291 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc----------HHHHHHHHHHHHHHhCCceEccCCHHhHH
Confidence 478899999999999998877654422222 23444433 2333222211 00000 01113455
Q ss_pred HHHhcCCCCcEEEEcCCCCCCC
Q 001077 1099 LMLSSATRNSLVVLDELGRGTS 1120 (1162)
Q Consensus 1099 ~IL~~AT~~SLVIlDELGRGTs 1120 (1162)
..|.......+||||..||.-.
T Consensus 292 ~~l~~~~~~DlVlIDt~G~~~~ 313 (424)
T PRK05703 292 KALEQLRDCDVILIDTAGRSQR 313 (424)
T ss_pred HHHHHhCCCCEEEEeCCCCCCC
Confidence 5666666789999999998543
No 452
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=93.27 E-value=0.13 Score=54.50 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=39.4
Q ss_pred ccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhh
Q 001077 1087 QSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFI 1148 (1162)
Q Consensus 1087 ~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~ 1148 (1162)
.|.=.....|+...| +...-|+|+||-=.|-+-.+-...|--+-.+. -.+++++..|=+
T Consensus 148 LSHGqKQwLEIGMll--~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la-~~hsilVVEHDM 206 (249)
T COG4674 148 LSHGQKQWLEIGMLL--AQDPKLLLLDEPVAGMTDAETEKTAELLKSLA-GKHSILVVEHDM 206 (249)
T ss_pred hccchhhhhhhheee--ccCCcEEEecCccCCCcHHHHHHHHHHHHHHh-cCceEEEEeccH
Confidence 344444445555544 35677999999999988888877776444332 345788888855
No 453
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=93.27 E-value=0.063 Score=56.74 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=20.1
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1162)
.+++|+|||++||||++|.++-
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999884
No 454
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.10 E-value=0.21 Score=54.78 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.9
Q ss_pred cceEEEEccCCCChhHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1162)
.+.++|+||-+.|||++++.++--
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999988854
No 455
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=93.10 E-value=0.08 Score=60.13 Aligned_cols=35 Identities=37% Similarity=0.601 Sum_probs=27.5
Q ss_pred ccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHH
Q 001077 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1014 fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
|---|+.++. ..+.||+||||+||||.|..+-.+.
T Consensus 14 f~~lditf~e---~~ttIivgpNGsGKTtvLdair~aL 48 (440)
T COG3950 14 FLNLDITFGE---SETTIIVGPNGSGKTTVLDAIRNAL 48 (440)
T ss_pred hhhceeecCC---CceEEEECCCCCChhhHHHHHHHHH
Confidence 5556777774 3479999999999999999886543
No 456
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.06 E-value=0.07 Score=56.11 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=19.8
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1162)
++++|.|||++||||+++.++-
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999998873
No 457
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.03 E-value=0.086 Score=59.62 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=25.9
Q ss_pred ccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHH
Q 001077 1016 PNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVI 1052 (1162)
Q Consensus 1016 PNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivI 1052 (1162)
+-++.++. .+.+|||||++||||+|..++++.-
T Consensus 14 ~~~~~~~~----~~~~i~G~NGsGKS~ll~Ai~~~~~ 46 (270)
T cd03242 14 ELELEFEP----GVTVLVGENAQGKTNLLEAISLLAT 46 (270)
T ss_pred eeEEecCC----CeEEEECCCCCCHHHHHHHHHHhcc
Confidence 33455543 4789999999999999999987653
No 458
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.03 E-value=0.15 Score=59.11 Aligned_cols=29 Identities=28% Similarity=0.340 Sum_probs=23.9
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcC
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG 1057 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG 1057 (1162)
+.+++|+|||++||||+++.+|.. +++-|
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~--l~~~g 142 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHK--YKAQG 142 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH--HHhcC
Confidence 468899999999999999999854 45555
No 459
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=92.90 E-value=0.5 Score=54.46 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=20.0
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
.++++|+||.|.||||+++.+|-
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~ 65 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCN 65 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHH
Confidence 45788899999999999998864
No 460
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=92.87 E-value=0.78 Score=53.57 Aligned_cols=132 Identities=21% Similarity=0.178 Sum_probs=72.2
Q ss_pred cccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCc-------cccCCcceeeee-cCCcc---
Q 001077 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-------FEISPVDRIFVR-MGAKD--- 1081 (1162)
Q Consensus 1013 ~fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~-------a~l~i~DrIfTR-IGa~D--- 1081 (1162)
-|+--|+-++-+ .| +.|.|||+-||||||+... |-.-|-+. .+|+.||.-+.- +.+..
T Consensus 602 LFkkldFGiDmd--SR-iaIVGPNGVGKSTlLkLL~--------Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~ 670 (807)
T KOG0066|consen 602 LFKKLDFGIDMD--SR-IAIVGPNGVGKSTLLKLLI--------GKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPV 670 (807)
T ss_pred hhhccccccccc--ce-eEEECCCCccHHHHHHHHh--------cCCCCCcchhhccceeeeechhhhhHHhhccccCHH
Confidence 366666655432 23 6789999999999998754 77777642 456667653310 00000
Q ss_pred ------------chhhcccchHHHH---------------HHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHh
Q 001077 1082 ------------HIMAGQSTFLTEL---------------SETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGF 1134 (1162)
Q Consensus 1082 ------------~i~~g~STFmvEM---------------~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~ 1134 (1162)
.--.-+-||-.+- ..++..=-.......+||||--..-+...=-|||-||-
T Consensus 671 EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIn-- 748 (807)
T KOG0066|consen 671 EYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAIN-- 748 (807)
T ss_pred HHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHH--
Confidence 0001112221110 00111111235677999999755544444445666665
Q ss_pred hcccCceEEEehhhhcccccceEe
Q 001077 1135 QSLAGSQFLSTLFIKCNAVDCFQL 1158 (1162)
Q Consensus 1135 ~~l~~~~~~~th~~~~~~~~~~~~ 1158 (1162)
++...+++.||--++-.--+.+|
T Consensus 749 -ey~GgVi~VsHDeRLi~eT~C~L 771 (807)
T KOG0066|consen 749 -EYNGGVIMVSHDERLIVETDCNL 771 (807)
T ss_pred -hccCcEEEEecccceeeecCceE
Confidence 56788999999886544333333
No 461
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.85 E-value=0.079 Score=57.35 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.1
Q ss_pred CcceEEEEccCCCChhHHHHHHHH
Q 001077 1026 NASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
.+.++.|+|||++||||++++++-
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999874
No 462
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.85 E-value=0.76 Score=50.39 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=22.4
Q ss_pred CcceEEEEccCCCChhHHHHHHHHHH
Q 001077 1026 NASFILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
...+++|+||+++||||+..+++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~ 44 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG 44 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH
Confidence 35689999999999999999988644
No 463
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=92.76 E-value=0.68 Score=54.93 Aligned_cols=133 Identities=21% Similarity=0.259 Sum_probs=78.9
Q ss_pred cccccceecCCCCCcceEEEEccCCCChhHHHH---------------------HHHHHHHHHHcCCcccCCcc--ccCC
Q 001077 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLR---------------------QVCLAVILAQVGADVPAEIF--EISP 1069 (1162)
Q Consensus 1013 ~fVPNDi~l~~~~~~~~~IITGPNMgGKST~LR---------------------qvaLivILAQiG~fVPA~~a--~l~i 1069 (1162)
..|--|+.+.- ..++.+.|-||.+|||||.|| +|-+..+=.||| -||-+.- .=+|
T Consensus 551 k~vl~disF~v-~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IG-VVPQDtvLFNdTI 628 (790)
T KOG0056|consen 551 KPVLSDISFTV-QPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIG-VVPQDTVLFNDTI 628 (790)
T ss_pred CceeecceEEe-cCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcC-cccCcceeeccee
Confidence 44555666643 235789999999999999976 455555667888 4787753 3366
Q ss_pred ccee-eeecCCccch--------------h---hcccc---------hHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChh
Q 001077 1070 VDRI-FVRMGAKDHI--------------M---AGQST---------FLTELSETALMLSSATRNSLVVLDELGRGTSTS 1122 (1162)
Q Consensus 1070 ~DrI-fTRIGa~D~i--------------~---~g~ST---------FmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~ 1122 (1162)
++.| |.|.+|+|.= + +|.-| =-.|=+++|-.-.--...+.|+|||--..-+|.
T Consensus 629 ~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~ 708 (790)
T KOG0056|consen 629 LYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTN 708 (790)
T ss_pred eeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCc
Confidence 6666 7788887621 1 01101 011222222111112468999999987765555
Q ss_pred hHHHHHHHHHHhhcccCceEEEehhh
Q 001077 1123 DGQAIAVFSSGFQSLAGSQFLSTLFI 1148 (1162)
Q Consensus 1123 DG~AIA~A~~~~~~l~~~~~~~th~~ 1148 (1162)
---+|-.|...+-.-.. .++..|-.
T Consensus 709 tER~IQaaL~rlca~RT-tIVvAHRL 733 (790)
T KOG0056|consen 709 TERAIQAALARLCANRT-TIVVAHRL 733 (790)
T ss_pred cHHHHHHHHHHHhcCCc-eEEEeeee
Confidence 55566666665555554 44455544
No 464
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=92.73 E-value=0.3 Score=53.45 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=30.0
Q ss_pred CcceEEEEccCCCChhHHHHHHHHHHHHH-HcCCcccCC
Q 001077 1026 NASFILLTGPNMGGKSTLLRQVCLAVILA-QVGADVPAE 1063 (1162)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivILA-QiG~fVPA~ 1063 (1162)
..++++|+||.++|||++.-|++..+... .-++||-++
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 35789999999999999999998776544 234677766
No 465
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.72 E-value=0.23 Score=58.27 Aligned_cols=85 Identities=19% Similarity=0.231 Sum_probs=46.3
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCC---cccCCccccCCcceeeeecCCccchhhcccch----HHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGA---DVPAEIFEISPVDRIFVRMGAKDHIMAGQSTF----LTELSETAL 1099 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~---fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STF----mvEM~Eta~ 1099 (1162)
.++++|+||+++||||++.-+|.. +..-|. +|-|+..+.+-+++.-+.-... |...+ -.++.+.-.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~l-----gvpv~~~~dp~dL~~al~ 278 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKL-----DVELIVATSPAELEEAVQ 278 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcC-----CCCEEecCCHHHHHHHHH
Confidence 478999999999999999999854 334453 3444433332222221110000 11111 123322222
Q ss_pred HHhcCCCCcEEEEcCCCCC
Q 001077 1100 MLSSATRNSLVVLDELGRG 1118 (1162)
Q Consensus 1100 IL~~AT~~SLVIlDELGRG 1118 (1162)
-++.+....+||||=-||.
T Consensus 279 ~l~~~~~~D~VLIDTAGr~ 297 (407)
T PRK12726 279 YMTYVNCVDHILIDTVGRN 297 (407)
T ss_pred HHHhcCCCCEEEEECCCCC
Confidence 2333345789999999985
No 466
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.69 E-value=0.084 Score=56.74 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=32.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHH---hhcccCceEEEehhhhcc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSG---FQSLAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~---~~~l~~~~~~~th~~~~~ 1151 (1162)
|-..-++|.||. ||..|=--+.-.... +.+..-++++.||-+..|
T Consensus 152 aM~P~vmLFDEP---TSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FA 199 (240)
T COG1126 152 AMDPKVMLFDEP---TSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFA 199 (240)
T ss_pred cCCCCEEeecCC---cccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHH
Confidence 677889999996 777777666554333 445555799999987543
No 467
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=92.67 E-value=0.43 Score=59.81 Aligned_cols=40 Identities=13% Similarity=0.098 Sum_probs=29.9
Q ss_pred cEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhh
Q 001077 1108 SLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFI 1148 (1162)
Q Consensus 1108 SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~ 1148 (1162)
.++||||--..-++.--..|-.++..+.+- .++++.+|-.
T Consensus 485 ~ILILDEaTSalD~~tE~~I~~~l~~l~~~-rT~iiIaHRl 524 (567)
T COG1132 485 PILILDEATSALDTETEALIQDALKKLLKG-RTTLIIAHRL 524 (567)
T ss_pred CEEEEeccccccCHHhHHHHHHHHHHHhcC-CEEEEEeccH
Confidence 799999977766666666787777655432 4888899986
No 468
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.57 E-value=0.11 Score=55.11 Aligned_cols=37 Identities=30% Similarity=0.439 Sum_probs=26.4
Q ss_pred ccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHH
Q 001077 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1014 fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
.|=+|+.+.-. ...+--|-|||++||||+|-.++=+.
T Consensus 15 ~vl~~isl~i~-~g~iTs~IGPNGAGKSTLLS~~sRL~ 51 (252)
T COG4604 15 VVLDDVSLDIP-KGGITSIIGPNGAGKSTLLSMMSRLL 51 (252)
T ss_pred Eeeccceeeec-CCceeEEECCCCccHHHHHHHHHHhc
Confidence 44455555432 34578899999999999998877543
No 469
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=92.49 E-value=0.096 Score=57.68 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.3
Q ss_pred CcceEEEEccCCCChhHHHHHHH
Q 001077 1026 NASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqva 1048 (1162)
...++.|+|||++||||+++.++
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~ 54 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLE 54 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999877
No 470
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=92.45 E-value=0.67 Score=55.40 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.2
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
++.++|.||+|.|||++.|.+|-
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999874
No 471
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=92.44 E-value=0.48 Score=51.70 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=25.3
Q ss_pred CcceEEEEccCCCChhHHHHHHHHHHHHH
Q 001077 1026 NASFILLTGPNMGGKSTLLRQVCLAVILA 1054 (1162)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivILA 1054 (1162)
...++.|+||+++|||+++.|+|..+...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~ 46 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLP 46 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcc
Confidence 35789999999999999999999887654
No 472
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=92.25 E-value=0.17 Score=56.92 Aligned_cols=49 Identities=18% Similarity=0.350 Sum_probs=38.1
Q ss_pred CccccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEccC-CchhhcccC
Q 001077 102 GEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD-GEDELLDLG 150 (1162)
Q Consensus 102 ~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd-g~~e~l~l~ 150 (1162)
..+-||-+|+..|-+|..||+++|++.+...+...|+|++ |..|.+.|+
T Consensus 67 ~~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~gYgn~e~v~l~ 116 (264)
T PF06003_consen 67 KKWKVGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFTGYGNEEEVNLS 116 (264)
T ss_dssp T---TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGG
T ss_pred cCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEcccCCeEeeehh
Confidence 3566999999999999999999999999999999999954 666656554
No 473
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.20 E-value=0.11 Score=50.10 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=19.6
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
..+++|.||+++||||+|+.++
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999954
No 474
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.13 E-value=0.092 Score=57.56 Aligned_cols=21 Identities=33% Similarity=0.291 Sum_probs=18.3
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaL 1049 (1162)
++.|.|||++||||+++.++-
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 467999999999999997774
No 475
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.12 E-value=0.33 Score=56.95 Aligned_cols=21 Identities=48% Similarity=0.692 Sum_probs=18.7
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
.+++|+||+++||||+|+.+.
T Consensus 123 g~ili~G~tGSGKTT~l~al~ 143 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMI 143 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999998754
No 476
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.06 E-value=0.28 Score=59.61 Aligned_cols=112 Identities=21% Similarity=0.208 Sum_probs=59.0
Q ss_pred CcceEEEEccCCCChhHHHHHHHHHHHHHHcC---CcccCCccccCCccee---eeecCCc-cchhhcccchHHHHHHHH
Q 001077 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVG---ADVPAEIFEISPVDRI---FVRMGAK-DHIMAGQSTFLTELSETA 1098 (1162)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivILAQiG---~fVPA~~a~l~i~DrI---fTRIGa~-D~i~~g~STFmvEM~Eta 1098 (1162)
...+++|+|+++.||||++.|++-. +++-| .||=.+... +.| ..|+|.. +++.--..+ .+.++.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EEs~----~qi~~ra~rlg~~~~~l~~~~e~---~~~~I~ 163 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEESL----QQIKMRAIRLGLPEPNLYVLSET---NWEQIC 163 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcCCH----HHHHHHHHHcCCChHHeEEcCCC---CHHHHH
Confidence 3568999999999999999998754 34443 466554321 111 1233321 111111111 233444
Q ss_pred HHHhcCCCCcEEEEcCCCC----------CCChhhHHHHHHHHHHh-hcccCceEEEehhh
Q 001077 1099 LMLSSATRNSLVVLDELGR----------GTSTSDGQAIAVFSSGF-QSLAGSQFLSTLFI 1148 (1162)
Q Consensus 1099 ~IL~~AT~~SLVIlDELGR----------GTst~DG~AIA~A~~~~-~~l~~~~~~~th~~ 1148 (1162)
..+.. ..-.+|+||.+-- |+-..-. .++..+..+ ++...++++++|-.
T Consensus 164 ~~i~~-~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r-~~~~~L~~~ak~~giTvllt~hvt 222 (454)
T TIGR00416 164 ANIEE-ENPQACVIDSIQTLYSPDISSAPGSVSQVR-ECTAELMRLAKTRGIAIFIVGHVT 222 (454)
T ss_pred HHHHh-cCCcEEEEecchhhcccccccCCCCHHHHH-HHHHHHHHHHHHhCCEEEEEeccc
Confidence 44543 4567999998742 2211111 122233443 45666677777743
No 477
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.01 E-value=0.1 Score=55.95 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=19.8
Q ss_pred eEEEEccCCCChhHHHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
++.|+||+++||||+++.++-+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999986543
No 478
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.93 E-value=0.23 Score=60.62 Aligned_cols=89 Identities=15% Similarity=0.182 Sum_probs=46.0
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCcccc--CCcce---eeeecCCccchhhcccchHHHHHHHHHHHh
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEI--SPVDR---IFVRMGAKDHIMAGQSTFLTELSETALMLS 1102 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l--~i~Dr---IfTRIGa~D~i~~g~STFmvEM~Eta~IL~ 1102 (1162)
+.+|++||.|.||||+.|.+|-.+-...---+.||..|.. ++-+. -+..+.|.++ .|...+ -++.+.+....
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~--~gid~i-R~i~~~~~~~p 113 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASN--RGIDEI-RKIRDAVGYRP 113 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCccc--CCHHHH-HHHHHHHhhCh
Confidence 4589999999999999998874432111111567765431 11110 1223334321 222211 12333332222
Q ss_pred cCCCCcEEEEcCCCCCC
Q 001077 1103 SATRNSLVVLDELGRGT 1119 (1162)
Q Consensus 1103 ~AT~~SLVIlDELGRGT 1119 (1162)
....+.+|||||+-+=|
T Consensus 114 ~~~~~kVvIIDE~h~Lt 130 (472)
T PRK14962 114 MEGKYKVYIIDEVHMLT 130 (472)
T ss_pred hcCCeEEEEEEChHHhH
Confidence 22467799999986643
No 479
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.92 E-value=0.38 Score=54.37 Aligned_cols=87 Identities=16% Similarity=0.226 Sum_probs=46.5
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcC---CcccCCccccCCcceeeee---cCCccchhhcccchHHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG---ADVPAEIFEISPVDRIFVR---MGAKDHIMAGQSTFLTELSETALM 1100 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG---~fVPA~~a~l~i~DrIfTR---IGa~D~i~~g~STFmvEM~Eta~I 1100 (1162)
...++|.|||+.||||+++.++... ..-| .+|-++..+++.+.+.-++ +|-.--.... ..++.+.-.-
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l--~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~----~~~l~~~l~~ 148 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRD----EAAMTRALTY 148 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCC----HHHHHHHHHH
Confidence 4689999999999999999987543 2223 2333333333333322111 1100000000 1223333233
Q ss_pred HhcCCCCcEEEEcCCCCCC
Q 001077 1101 LSSATRNSLVVLDELGRGT 1119 (1162)
Q Consensus 1101 L~~AT~~SLVIlDELGRGT 1119 (1162)
|++.....+||||-.||.-
T Consensus 149 l~~~~~~D~ViIDt~Gr~~ 167 (270)
T PRK06731 149 FKEEARVDYILIDTAGKNY 167 (270)
T ss_pred HHhcCCCCEEEEECCCCCc
Confidence 3444567999999999964
No 480
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=91.88 E-value=0.18 Score=65.17 Aligned_cols=104 Identities=20% Similarity=0.325 Sum_probs=56.4
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCC-cc--chhhcccchHHHHH-HHHHHHhc
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGA-KD--HIMAGQSTFLTELS-ETALMLSS 1103 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa-~D--~i~~g~STFmvEM~-Eta~IL~~ 1103 (1162)
.+++|.||.+.||||+.|.+|-.. |. |. +...+|. .| .|.....||...|. .+...+..
T Consensus 350 ~~i~l~GppG~GKTtl~~~ia~~l-----~~--~~----------~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~ 412 (784)
T PRK10787 350 PILCLVGPPGVGKTSLGQSIAKAT-----GR--KY----------VRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAK 412 (784)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh-----CC--CE----------EEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHh
Confidence 368899999999999999998431 21 11 1111222 11 12222334433331 12222333
Q ss_pred C-CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 A-TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 A-T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+ +.+-+++|||+-+-+....|- .+-|..++..-.....+..||..
T Consensus 413 ~~~~~~villDEidk~~~~~~g~-~~~aLlevld~~~~~~~~d~~~~ 458 (784)
T PRK10787 413 VGVKNPLFLLDEIDKMSSDMRGD-PASALLEVLDPEQNVAFSDHYLE 458 (784)
T ss_pred cCCCCCEEEEEChhhcccccCCC-HHHHHHHHhccccEEEEeccccc
Confidence 3 467799999998876654442 23345555554445555556554
No 481
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=91.87 E-value=0.047 Score=59.23 Aligned_cols=52 Identities=17% Similarity=0.107 Sum_probs=32.9
Q ss_pred HHHHHhcCCCC-cEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhh
Q 001077 1097 TALMLSSATRN-SLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFI 1148 (1162)
Q Consensus 1097 ta~IL~~AT~~-SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~ 1148 (1162)
+...|..+... ++++|||.-.+=.+.==..|+-.+........-+|++||--
T Consensus 247 l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp 299 (303)
T PF13304_consen 247 LLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSP 299 (303)
T ss_dssp HHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-G
T ss_pred HHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccc
Confidence 34444555555 99999999999888554444443333333345689999954
No 482
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.57 E-value=0.15 Score=65.02 Aligned_cols=25 Identities=44% Similarity=0.614 Sum_probs=22.1
Q ss_pred cceEEEEccCCCChhHHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
..+++|.|||++||||+|+.+.++.
T Consensus 28 ~~~~~i~G~Ng~GKttll~ai~~~L 52 (650)
T TIGR03185 28 KPIILIGGLNGAGKTTLLDAIQLAL 52 (650)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999997755
No 483
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.56 E-value=0.2 Score=59.12 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.4
Q ss_pred ceEEEEccCCCChhHHHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
.+.+|+|||++|||++|..++++.
T Consensus 24 ~~nvi~G~NGsGKT~lLeAi~~l~ 47 (365)
T TIGR00611 24 GVNVIVGPNGQGKTNLLEAIYYLA 47 (365)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998754
No 484
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=91.52 E-value=0.15 Score=53.78 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.2
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
..+++|+||+++||||+++.++
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999987
No 485
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.51 E-value=0.8 Score=56.41 Aligned_cols=88 Identities=20% Similarity=0.189 Sum_probs=45.0
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCcccc-----CCcceeeeecCCccchhhcccchHHHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEI-----SPVDRIFVRMGAKDHIMAGQSTFLTELSETALML 1101 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l-----~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL 1101 (1162)
.+.+|+|||-|.||||+.|.++=...- .-+-..||-.|.- .-....+..|++.++..- .-.-++.+-....
T Consensus 36 ~ha~Lf~GppGtGKTTlA~~lA~~l~c-~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~~v---d~iR~l~~~~~~~ 111 (504)
T PRK14963 36 GHAYLFSGPRGVGKTTTARLIAMAVNC-SGEDPKPCGECESCLAVRRGAHPDVLEIDAASNNSV---EDVRDLREKVLLA 111 (504)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhc-cCCCCCCCCcChhhHHHhcCCCCceEEecccccCCH---HHHHHHHHHHhhc
Confidence 356899999999999999987644321 1001123332211 011123445555443210 0112222222222
Q ss_pred hcCCCCcEEEEcCCCCC
Q 001077 1102 SSATRNSLVVLDELGRG 1118 (1162)
Q Consensus 1102 ~~AT~~SLVIlDELGRG 1118 (1162)
.....+-+|||||..+=
T Consensus 112 p~~~~~kVVIIDEad~l 128 (504)
T PRK14963 112 PLRGGRKVYILDEAHMM 128 (504)
T ss_pred cccCCCeEEEEECcccc
Confidence 22346779999999754
No 486
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=91.51 E-value=0.21 Score=53.97 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=30.3
Q ss_pred CcceEEEEccCCCChhHHHHHHHHHHHHH-HcCCcccCCc
Q 001077 1026 NASFILLTGPNMGGKSTLLRQVCLAVILA-QVGADVPAEI 1064 (1162)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivILA-QiG~fVPA~~ 1064 (1162)
..+++.|+||+++|||++..|++..+.-. +-.+||-++.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 35789999999999999999998776532 2346777764
No 487
>CHL00181 cbbX CbbX; Provisional
Probab=91.40 E-value=0.97 Score=51.65 Aligned_cols=69 Identities=19% Similarity=0.318 Sum_probs=41.3
Q ss_pred EEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhh---cccchHHHHHHHHHHHhcCCC
Q 001077 1030 ILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMA---GQSTFLTELSETALMLSSATR 1106 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~---g~STFmvEM~Eta~IL~~AT~ 1106 (1162)
++|+||.|.||||+.|.+|-.. ...| +++... |..+. .+++.. |.+. ..+..+++.|..
T Consensus 62 ill~G~pGtGKT~lAr~la~~~--~~~g-~~~~~~---------~~~v~-~~~l~~~~~g~~~-----~~~~~~l~~a~g 123 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADIL--YKLG-YIKKGH---------LLTVT-RDDLVGQYIGHTA-----PKTKEVLKKAMG 123 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHH--HHcC-CCCCCc---------eEEec-HHHHHHHHhccch-----HHHHHHHHHccC
Confidence 8899999999999999998753 3333 222111 11111 112221 2221 234567777754
Q ss_pred CcEEEEcCCCC
Q 001077 1107 NSLVVLDELGR 1117 (1162)
Q Consensus 1107 ~SLVIlDELGR 1117 (1162)
.+++|||+++
T Consensus 124 -gVLfIDE~~~ 133 (287)
T CHL00181 124 -GVLFIDEAYY 133 (287)
T ss_pred -CEEEEEccch
Confidence 6999999975
No 488
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=91.37 E-value=0.21 Score=59.42 Aligned_cols=89 Identities=19% Similarity=0.221 Sum_probs=49.5
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcC-----CcccCCccc--cCCcceeeeecCCccchhhcccchHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG-----ADVPAEIFE--ISPVDRIFVRMGAKDHIMAGQSTFLTELSETAL 1099 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG-----~fVPA~~a~--l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~ 1099 (1162)
...++|+||-+.||||++|.++--.- +-+ .||.|.... -.++..|+..++..+.-..|. ++..-+..+..
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~--~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~~~~~~ 131 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELE--EIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGL-SFDELFDKIAE 131 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHHHH
Confidence 34589999999999999999975332 222 233332211 122334444444322112222 23333444455
Q ss_pred HHhcCCCCcEEEEcCCCCC
Q 001077 1100 MLSSATRNSLVVLDELGRG 1118 (1162)
Q Consensus 1100 IL~~AT~~SLVIlDELGRG 1118 (1162)
.++......+|+|||+-.-
T Consensus 132 ~l~~~~~~~viviDE~d~l 150 (394)
T PRK00411 132 YLDERDRVLIVALDDINYL 150 (394)
T ss_pred HHHhcCCEEEEEECCHhHh
Confidence 5655556678999999764
No 489
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=91.35 E-value=0.41 Score=57.73 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=24.1
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcC
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG 1057 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG 1057 (1162)
+.+++++||+++||||++.-+|. .+++-|
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~--~L~~~g 123 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLAR--YFKKKG 123 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH--HHHHcC
Confidence 46789999999999999999884 455666
No 490
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=91.27 E-value=0.82 Score=53.21 Aligned_cols=91 Identities=23% Similarity=0.295 Sum_probs=54.8
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcc------cCCc----ccc---------CCcceeeeecCCccchhhcc
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV------PAEI----FEI---------SPVDRIFVRMGAKDHIMAGQ 1087 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fV------PA~~----a~l---------~i~DrIfTRIGa~D~i~~g~ 1087 (1162)
..++.||||+++|||||+..++- .|...|.-| |... |-+ +--..+|.|.-++-.-..|.
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~--~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~ 133 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGM--HLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV 133 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccch
Confidence 56899999999999999997654 444657654 2221 111 22234555554443333344
Q ss_pred cchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhh
Q 001077 1088 STFLTELSETALMLSSATRNSLVVLDELGRGTSTSD 1123 (1162)
Q Consensus 1088 STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~D 1123 (1162)
|....+..+ .+. +..-.+||||=.|.|.+..+
T Consensus 134 a~~~~~~~~---~~~-~~g~d~viieT~Gv~qs~~~ 165 (332)
T PRK09435 134 ARKTRETML---LCE-AAGYDVILVETVGVGQSETA 165 (332)
T ss_pred HHHHHHHHH---HHh-ccCCCEEEEECCCCccchhH
Confidence 444443333 333 34578999999999966544
No 491
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=91.19 E-value=0.17 Score=49.34 Aligned_cols=20 Identities=40% Similarity=0.757 Sum_probs=18.5
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
+++|+||-++||||+.++++
T Consensus 1 vI~I~G~~gsGKST~a~~La 20 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELA 20 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999986
No 492
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=91.18 E-value=0.3 Score=59.37 Aligned_cols=102 Identities=14% Similarity=0.136 Sum_probs=52.5
Q ss_pred eEEEEccCCCChhHHHHHHHHHHHHHHcCC---cccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCC
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGA---DVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSAT 1105 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~---fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT 1105 (1162)
-++|+||-|.|||.+|+.+|--+.-.+-|. ||+++...-.+.+.+ +..+ .++..+.+...
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l----~~~~-------------~~~~~~~~~~~ 205 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDIL----QKTH-------------KEIEQFKNEIC 205 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHH----HHhh-------------hHHHHHHHHhc
Confidence 488999999999999988875333223333 444443221111111 0000 11223333334
Q ss_pred CCcEEEEcCCCCCCChhhHHH-HHHHHHHhhcccCceEEEehh
Q 001077 1106 RNSLVVLDELGRGTSTSDGQA-IAVFSSGFQSLAGSQFLSTLF 1147 (1162)
Q Consensus 1106 ~~SLVIlDELGRGTst~DG~A-IA~A~~~~~~l~~~~~~~th~ 1147 (1162)
...++||||++.-.......- +..-+-.+......++++++.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~ 248 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDK 248 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCC
Confidence 567999999987654333322 222222233333346666554
No 493
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=91.13 E-value=0.17 Score=50.83 Aligned_cols=20 Identities=45% Similarity=0.772 Sum_probs=18.4
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
++++.||+++||||+.++++
T Consensus 1 lii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999975
No 494
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=91.11 E-value=0.18 Score=67.61 Aligned_cols=26 Identities=42% Similarity=0.798 Sum_probs=23.3
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVI 1052 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivI 1052 (1162)
..+.+||||||+||||+|..+|++.+
T Consensus 30 ~~l~~I~G~tGaGKStildai~~aLy 55 (1047)
T PRK10246 30 NGLFAITGPTGAGKTTLLDAICLALY 55 (1047)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35899999999999999999998764
No 495
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=91.03 E-value=0.57 Score=55.67 Aligned_cols=73 Identities=21% Similarity=0.227 Sum_probs=50.5
Q ss_pred EEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCCCCcE
Q 001077 1030 ILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSL 1109 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~SL 1109 (1162)
+|+.||.+.|||.+...++.... .+.|.|+-+ .++..+..| ..+..-..-.|
T Consensus 212 li~lGp~GTGKThla~~l~~~~a-~~sG~f~T~------------------a~Lf~~L~~---------~~lg~v~~~Dl 263 (449)
T TIGR02688 212 LIELGPKGTGKSYIYNNLSPYVI-LISGGTITV------------------AKLFYNIST---------RQIGLVGRWDV 263 (449)
T ss_pred EEEECCCCCCHHHHHHHHhHHHH-HHcCCcCcH------------------HHHHHHHHH---------HHHhhhccCCE
Confidence 88999999999999998887743 234644322 122222222 56667778899
Q ss_pred EEEcCCCC--CCChhhHHHHHHH
Q 001077 1110 VVLDELGR--GTSTSDGQAIAVF 1130 (1162)
Q Consensus 1110 VIlDELGR--GTst~DG~AIA~A 1130 (1162)
|||||+|- -....||.+|---
T Consensus 264 LI~DEvgylp~~~~~~~v~imK~ 286 (449)
T TIGR02688 264 VAFDEVATLKFAKPKELIGILKN 286 (449)
T ss_pred EEEEcCCCCcCCchHHHHHHHHH
Confidence 99999997 5566678777544
No 496
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.98 E-value=0.16 Score=59.84 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=18.9
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
..+++|+|||++||||+|+.++
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl 155 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAII 155 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999998743
No 497
>PRK06835 DNA replication protein DnaC; Validated
Probab=90.90 E-value=0.64 Score=54.09 Aligned_cols=104 Identities=18% Similarity=0.151 Sum_probs=58.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCCCC
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRN 1107 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~ 1107 (1162)
..++|.||.|.|||.++..+|-.++ +-|.-|-.-.+ +.+|..+- ........++.+. ++....-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~--~~g~~V~y~t~-----~~l~~~l~------~~~~~~~~~~~~~---~~~l~~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL--DRGKSVIYRTA-----DELIEILR------EIRFNNDKELEEV---YDLLINC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEEH-----HHHHHHHH------HHHhccchhHHHH---HHHhccC
Confidence 3499999999999999998776554 33543321110 11111110 0000001122111 4444556
Q ss_pred cEEEEcCCCCCCChhhHHHHHHHHHHhhcc-cCceEEEehh
Q 001077 1108 SLVVLDELGRGTSTSDGQAIAVFSSGFQSL-AGSQFLSTLF 1147 (1162)
Q Consensus 1108 SLVIlDELGRGTst~DG~AIA~A~~~~~~l-~~~~~~~th~ 1147 (1162)
.|+|||+||.--.+......-+.+...... ...++++|-+
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 899999999987666666666666664433 3457777764
No 498
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=90.79 E-value=0.21 Score=56.96 Aligned_cols=22 Identities=32% Similarity=0.300 Sum_probs=18.7
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
+.++.|.|||++||||++|.+.
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3467899999999999999754
No 499
>PRK00300 gmk guanylate kinase; Provisional
Probab=90.75 E-value=0.18 Score=54.17 Aligned_cols=23 Identities=39% Similarity=0.639 Sum_probs=20.9
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
+.+++|+||+++||||++++++-
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~ 27 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLE 27 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999874
No 500
>PRK00064 recF recombination protein F; Reviewed
Probab=90.74 E-value=0.21 Score=58.98 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.1
Q ss_pred ceEEEEccCCCChhHHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1162)
.+.+|+|||++||||+|..++++
T Consensus 24 ~~~~i~G~NgsGKT~lleai~~l 46 (361)
T PRK00064 24 GVNVLVGENGQGKTNLLEAIYLL 46 (361)
T ss_pred CeEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999974
Done!