Query 001077
Match_columns 1162
No_of_seqs 520 out of 2434
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 09:53:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001077.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001077hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o8b_B DNA mismatch repair pro 100.0 1E-151 4E-156 1457.9 81.0 853 278-1152 18-916 (1022)
2 3thx_B DNA mismatch repair pro 100.0 1E-129 4E-134 1235.6 77.1 763 325-1152 11-800 (918)
3 1wb9_A DNA mismatch repair pro 100.0 2E-123 8E-128 1170.0 73.6 718 325-1153 8-735 (800)
4 1ewq_A DNA mismatch repair pro 100.0 8E-119 3E-123 1122.9 72.6 685 325-1153 11-703 (765)
5 3thx_A DNA mismatch repair pro 100.0 3E-114 1E-118 1097.7 69.3 752 325-1155 14-792 (934)
6 1ye8_A Protein THEP1, hypothet 98.3 1.8E-06 6.1E-11 89.8 8.9 115 1029-1146 2-138 (178)
7 1vpl_A ABC transporter, ATP-bi 97.9 2.8E-05 9.5E-10 85.5 10.5 47 1104-1150 162-208 (256)
8 1sgw_A Putative ABC transporte 97.9 1.5E-05 5.2E-10 85.2 7.8 48 1103-1150 148-195 (214)
9 3tif_A Uncharacterized ABC tra 97.9 4.9E-05 1.7E-09 82.4 11.1 52 1104-1155 161-213 (235)
10 3ec2_A DNA replication protein 97.8 1.1E-05 3.6E-10 83.4 5.3 105 1027-1148 38-143 (180)
11 2olj_A Amino acid ABC transpor 97.8 2E-05 7E-10 86.9 7.7 48 1104-1151 175-222 (263)
12 2nq2_C Hypothetical ABC transp 97.8 3.1E-05 1E-09 85.0 8.6 47 1104-1150 144-191 (253)
13 2pcj_A ABC transporter, lipopr 97.8 3.4E-05 1.2E-09 83.0 7.9 52 1104-1155 156-207 (224)
14 2ff7_A Alpha-hemolysin translo 97.8 5.9E-05 2E-09 82.4 9.7 49 1104-1153 161-209 (247)
15 4g1u_C Hemin import ATP-bindin 97.8 1.4E-05 4.9E-10 88.3 4.7 136 1015-1151 26-211 (266)
16 2onk_A Molybdate/tungstate ABC 97.7 4.9E-05 1.7E-09 82.7 8.5 46 1104-1149 142-188 (240)
17 2d2e_A SUFC protein; ABC-ATPas 97.7 4.1E-05 1.4E-09 83.8 7.9 64 1087-1152 144-207 (250)
18 2qi9_C Vitamin B12 import ATP- 97.7 3.6E-05 1.2E-09 84.2 7.1 43 1109-1151 154-196 (249)
19 2pjz_A Hypothetical protein ST 97.7 4.3E-05 1.5E-09 84.3 6.6 49 1104-1155 144-193 (263)
20 2zu0_C Probable ATP-dependent 97.6 0.0001 3.4E-09 81.5 9.0 60 1091-1152 169-228 (267)
21 2w0m_A SSO2452; RECA, SSPF, un 97.6 0.00011 3.6E-09 78.3 8.9 26 1027-1052 23-48 (235)
22 1ji0_A ABC transporter; ATP bi 97.6 5.1E-05 1.7E-09 82.6 6.5 46 1104-1149 155-200 (240)
23 1g6h_A High-affinity branched- 97.6 0.00011 3.9E-09 80.6 9.2 52 1104-1155 169-221 (257)
24 3tui_C Methionine import ATP-b 97.6 5.2E-05 1.8E-09 87.2 6.6 48 1104-1151 179-227 (366)
25 2kjq_A DNAA-related protein; s 97.6 0.00012 4.2E-09 73.5 8.4 26 1027-1052 36-61 (149)
26 2ixe_A Antigen peptide transpo 97.6 0.00014 4.8E-09 80.5 9.2 50 1104-1153 172-222 (271)
27 3gfo_A Cobalt import ATP-bindi 97.6 6.7E-05 2.3E-09 83.3 6.5 48 1104-1151 159-207 (275)
28 2yz2_A Putative ABC transporte 97.5 0.00012 4E-09 81.0 7.9 48 1104-1151 154-201 (266)
29 2ehv_A Hypothetical protein PH 97.5 3.7E-05 1.2E-09 83.1 3.6 26 1027-1052 30-55 (251)
30 1b0u_A Histidine permease; ABC 97.5 9.8E-05 3.4E-09 81.4 6.9 48 1104-1151 169-216 (262)
31 1mv5_A LMRA, multidrug resista 97.5 0.00011 3.9E-09 79.9 7.1 49 1104-1153 155-203 (243)
32 3fvq_A Fe(3+) IONS import ATP- 97.5 0.00021 7.3E-09 82.0 9.5 48 1104-1151 154-202 (359)
33 2cbz_A Multidrug resistance-as 97.5 0.00013 4.4E-09 79.2 7.2 49 1104-1153 143-194 (237)
34 3ozx_A RNAse L inhibitor; ATP 97.5 0.00022 7.6E-09 86.5 9.8 60 1087-1149 139-198 (538)
35 3d31_A Sulfate/molybdate ABC t 97.5 0.00016 5.6E-09 82.8 8.2 47 1104-1150 143-190 (348)
36 2ihy_A ABC transporter, ATP-bi 97.5 0.00023 7.9E-09 79.2 9.0 52 1104-1155 177-231 (279)
37 2l8d_A Lamin-B receptor; DNA b 97.5 0.00015 5E-09 60.4 5.3 44 105-148 11-54 (66)
38 1nlf_A Regulatory protein REPA 97.4 0.00012 4.1E-09 81.2 6.5 35 1017-1051 20-54 (279)
39 1oxx_K GLCV, glucose, ABC tran 97.4 0.00018 6.1E-09 82.7 8.1 47 1104-1150 156-203 (353)
40 2yyz_A Sugar ABC transporter, 97.4 0.00027 9.2E-09 81.3 9.5 47 1104-1150 149-196 (359)
41 2ghi_A Transport protein; mult 97.4 0.00041 1.4E-08 76.3 10.5 49 1104-1153 171-219 (260)
42 1z47_A CYSA, putative ABC-tran 97.4 0.00022 7.6E-09 81.8 8.5 47 1104-1150 161-208 (355)
43 2dig_A Lamin-B receptor; tudor 97.4 0.00018 6.1E-09 60.0 5.5 50 105-156 14-63 (68)
44 2pze_A Cystic fibrosis transme 97.4 0.00016 5.4E-09 78.1 6.6 48 1104-1152 146-194 (229)
45 3j16_B RLI1P; ribosome recycli 97.4 0.00023 7.8E-09 87.5 8.4 53 1095-1149 230-282 (608)
46 2it1_A 362AA long hypothetical 97.4 0.00026 8.7E-09 81.6 8.2 47 1104-1150 149-196 (362)
47 1v43_A Sugar-binding transport 97.4 0.00046 1.6E-08 79.7 10.2 128 1015-1151 26-205 (372)
48 3rlf_A Maltose/maltodextrin im 97.3 0.00025 8.7E-09 81.9 7.9 46 1105-1150 150-196 (381)
49 4gp7_A Metallophosphoesterase; 97.3 5.8E-05 2E-09 77.5 2.2 20 1027-1046 9-28 (171)
50 2bbs_A Cystic fibrosis transme 97.3 0.00019 6.4E-09 80.3 6.4 49 1104-1153 175-224 (290)
51 3ux8_A Excinuclease ABC, A sub 97.3 0.00058 2E-08 85.3 10.8 71 1086-1156 543-614 (670)
52 1yqt_A RNAse L inhibitor; ATP- 97.3 0.00046 1.6E-08 83.8 9.4 61 1087-1149 159-219 (538)
53 3ux8_A Excinuclease ABC, A sub 97.3 0.00059 2E-08 85.2 10.6 70 1086-1155 202-271 (670)
54 1g29_1 MALK, maltose transport 97.3 0.00036 1.2E-08 80.7 7.8 47 1104-1150 155-202 (372)
55 2eyu_A Twitching motility prot 97.2 0.00038 1.3E-08 76.6 6.9 102 1027-1149 25-134 (261)
56 2ygr_A Uvrabc system protein A 97.2 0.0017 5.9E-08 82.9 13.7 68 1091-1158 868-936 (993)
57 3bk7_A ABC transporter ATP-bin 97.2 0.00061 2.1E-08 83.8 9.2 60 1088-1149 230-289 (607)
58 2r6f_A Excinuclease ABC subuni 97.2 0.0013 4.4E-08 83.7 12.1 68 1091-1158 850-918 (972)
59 2cvh_A DNA repair and recombin 97.2 0.00028 9.4E-09 74.6 5.1 24 1026-1049 19-42 (220)
60 1n0w_A DNA repair protein RAD5 97.1 0.00014 4.9E-09 78.1 2.8 27 1027-1053 24-50 (243)
61 2i3b_A HCR-ntpase, human cance 97.1 0.00025 8.7E-09 74.2 4.3 27 1029-1057 3-29 (189)
62 1cr0_A DNA primase/helicase; R 97.1 0.0004 1.4E-08 77.5 6.2 27 1027-1053 35-61 (296)
63 4a74_A DNA repair and recombin 97.1 0.00012 4.1E-09 78.0 1.8 25 1027-1051 25-49 (231)
64 3p8d_A Medulloblastoma antigen 97.1 0.00054 1.9E-08 58.6 5.1 45 103-149 6-50 (67)
65 3pih_A Uvrabc system protein A 97.0 0.0034 1.2E-07 80.2 14.4 62 1097-1158 816-878 (916)
66 3jvv_A Twitching mobility prot 97.0 0.00049 1.7E-08 79.1 5.7 103 1028-1149 124-232 (356)
67 2g3r_A Tumor suppressor P53-bi 97.0 0.00053 1.8E-08 64.4 4.6 47 101-148 2-48 (123)
68 3nh6_A ATP-binding cassette SU 96.9 0.0012 4.3E-08 74.1 8.1 46 1105-1151 207-252 (306)
69 4aby_A DNA repair protein RECN 96.9 0.0026 9.1E-08 74.3 11.3 63 1094-1158 303-366 (415)
70 2equ_A PHD finger protein 20-l 96.9 0.00077 2.6E-08 59.1 4.9 52 102-157 8-59 (74)
71 1yqt_A RNAse L inhibitor; ATP- 96.9 0.0018 6.1E-08 78.6 10.0 47 1104-1150 417-464 (538)
72 3bk7_A ABC transporter ATP-bin 96.9 0.0016 5.5E-08 80.0 9.2 48 1104-1151 487-535 (607)
73 3b85_A Phosphate starvation-in 96.9 0.0019 6.7E-08 68.5 8.7 29 1028-1058 23-51 (208)
74 3qii_A PHD finger protein 20; 96.9 0.00097 3.3E-08 59.4 5.1 46 102-149 20-65 (85)
75 2zr9_A Protein RECA, recombina 96.8 0.0019 6.5E-08 74.1 8.2 131 1014-1148 46-198 (349)
76 3j16_B RLI1P; ribosome recycli 96.8 0.002 6.8E-08 79.1 8.9 49 1103-1151 482-531 (608)
77 3qf7_A RAD50; ABC-ATPase, ATPa 96.8 0.0024 8.2E-08 73.7 9.1 51 1105-1155 302-352 (365)
78 3ozx_A RNAse L inhibitor; ATP 96.8 0.0017 6E-08 78.6 8.1 48 1104-1151 401-449 (538)
79 2iw3_A Elongation factor 3A; a 96.7 0.0013 4.4E-08 84.3 6.9 126 1015-1149 450-606 (986)
80 1mhn_A SurviVal motor neuron p 96.7 0.0017 5.7E-08 54.6 5.1 46 105-150 5-51 (59)
81 3gd7_A Fusion complex of cysti 96.6 0.0017 5.6E-08 75.6 6.2 34 1014-1048 35-68 (390)
82 3b60_A Lipid A export ATP-bind 96.6 0.0047 1.6E-07 75.7 9.9 48 1105-1153 497-544 (582)
83 1e69_A Chromosome segregation 96.5 0.013 4.4E-07 66.3 12.7 69 1086-1155 219-289 (322)
84 3qf4_B Uncharacterized ABC tra 96.5 0.0033 1.1E-07 77.3 8.4 45 1105-1150 508-552 (598)
85 3b5x_A Lipid A export ATP-bind 96.5 0.0063 2.1E-07 74.6 10.8 46 1104-1150 496-541 (582)
86 2ldm_A Uncharacterized protein 95.5 0.00042 1.4E-08 61.5 0.0 45 104-150 7-51 (81)
87 2eqj_A Metal-response element- 96.5 0.0035 1.2E-07 52.9 5.3 45 105-150 15-59 (66)
88 2dr3_A UPF0273 protein PH0284; 96.4 0.0054 1.9E-07 65.7 8.1 26 1027-1052 23-48 (247)
89 3sop_A Neuronal-specific septi 96.4 0.009 3.1E-07 65.9 9.9 23 1029-1051 4-26 (270)
90 2vf7_A UVRA2, excinuclease ABC 96.4 0.0044 1.5E-07 78.5 8.3 53 1106-1158 751-803 (842)
91 1ssf_A Transformation related 96.4 0.0032 1.1E-07 61.7 5.3 49 99-148 4-52 (156)
92 3hr8_A Protein RECA; alpha and 96.3 0.006 2E-07 70.0 8.2 102 1014-1120 46-153 (356)
93 2ewv_A Twitching motility prot 96.3 0.0031 1E-07 73.0 5.8 24 1027-1050 136-159 (372)
94 1pzn_A RAD51, DNA repair and r 96.3 0.0061 2.1E-07 69.8 8.3 25 1027-1051 131-155 (349)
95 3e70_C DPA, signal recognition 96.3 0.0028 9.6E-08 72.0 5.3 25 1026-1050 128-152 (328)
96 4a82_A Cystic fibrosis transme 96.3 0.023 7.9E-07 69.5 13.7 47 1105-1152 494-540 (578)
97 3s6w_A Tudor domain-containing 96.3 0.005 1.7E-07 50.6 5.1 45 106-150 4-49 (54)
98 4a4f_A SurviVal of motor neuro 96.2 0.0064 2.2E-07 51.9 5.8 48 103-150 8-56 (64)
99 2pt7_A CAG-ALFA; ATPase, prote 96.2 0.0038 1.3E-07 71.0 5.8 112 1015-1149 160-276 (330)
100 1znw_A Guanylate kinase, GMP k 96.2 0.0021 7.2E-08 67.7 3.4 35 1013-1050 9-43 (207)
101 3qf4_A ABC transporter, ATP-bi 96.2 0.045 1.5E-06 67.1 15.3 49 1105-1154 496-544 (587)
102 1g5v_A SurviVal motor neuron p 96.1 0.0058 2E-07 55.5 5.4 48 103-150 10-58 (88)
103 3szr_A Interferon-induced GTP- 96.1 0.0058 2E-07 75.3 7.3 33 1029-1069 47-79 (608)
104 2npi_A Protein CLP1; CLP1-PCF1 96.1 0.0049 1.7E-07 73.2 6.4 25 1027-1051 138-162 (460)
105 2yl4_A ATP-binding cassette SU 96.0 0.0091 3.1E-07 73.4 8.3 45 1105-1150 500-544 (595)
106 3lda_A DNA repair protein RAD5 96.0 0.003 1E-07 73.7 3.6 27 1027-1053 178-204 (400)
107 2iw3_A Elongation factor 3A; a 95.9 0.0063 2.2E-07 78.0 6.4 49 1104-1155 917-966 (986)
108 1sxj_E Activator 1 40 kDa subu 95.8 0.0083 2.8E-07 68.2 6.4 20 1030-1049 39-58 (354)
109 2m0o_A PHD finger protein 1; t 95.8 0.03 1E-06 48.2 7.7 45 105-150 28-72 (79)
110 2w58_A DNAI, primosome compone 95.7 0.0067 2.3E-07 63.2 4.6 24 1028-1051 55-78 (202)
111 3tr0_A Guanylate kinase, GMP k 95.7 0.0048 1.6E-07 64.3 3.2 23 1027-1049 7-29 (205)
112 1htw_A HI0065; nucleotide-bind 95.6 0.0048 1.7E-07 62.5 3.0 37 1014-1051 21-57 (158)
113 3a00_A Guanylate kinase, GMP k 95.6 0.0046 1.6E-07 64.0 2.9 21 1028-1048 2-22 (186)
114 2yhs_A FTSY, cell division pro 95.6 0.0093 3.2E-07 70.9 5.6 24 1027-1050 293-316 (503)
115 3qkt_A DNA double-strand break 95.6 0.14 4.9E-06 58.1 15.4 50 1104-1153 270-319 (339)
116 2jeo_A Uridine-cytidine kinase 95.6 0.0056 1.9E-07 66.3 3.5 34 1015-1049 14-47 (245)
117 2z4s_A Chromosomal replication 95.5 0.024 8.1E-07 67.0 8.6 98 1028-1147 131-236 (440)
118 3bos_A Putative DNA replicatio 95.5 0.013 4.5E-07 62.1 5.8 25 1027-1051 52-76 (242)
119 2px0_A Flagellar biosynthesis 95.3 0.0049 1.7E-07 69.0 2.0 84 1027-1119 105-195 (296)
120 3pnw_C Tudor domain-containing 95.3 0.02 6.9E-07 50.7 5.5 48 103-150 17-65 (77)
121 1fnn_A CDC6P, cell division co 95.3 0.014 4.6E-07 67.0 5.6 86 1029-1118 46-137 (389)
122 1zp6_A Hypothetical protein AT 95.2 0.0089 3E-07 61.5 3.4 22 1027-1048 9-30 (191)
123 3kta_A Chromosome segregation 95.2 0.0097 3.3E-07 60.9 3.5 23 1029-1051 28-50 (182)
124 2d9t_A Tudor domain-containing 95.2 0.022 7.4E-07 50.6 5.2 48 103-150 9-57 (78)
125 3lnc_A Guanylate kinase, GMP k 95.1 0.0069 2.4E-07 64.8 2.3 22 1027-1048 27-48 (231)
126 1in4_A RUVB, holliday junction 95.1 0.019 6.6E-07 65.1 6.1 64 1028-1119 52-115 (334)
127 1z6g_A Guanylate kinase; struc 95.1 0.0094 3.2E-07 63.4 3.1 23 1027-1049 23-45 (218)
128 2r6a_A DNAB helicase, replicat 95.0 0.02 6.9E-07 67.9 6.1 29 1026-1054 202-230 (454)
129 3asz_A Uridine kinase; cytidin 95.0 0.011 3.7E-07 62.0 3.3 24 1027-1050 6-29 (211)
130 2qby_A CDC6 homolog 1, cell di 95.0 0.018 6.3E-07 65.6 5.4 90 1027-1119 45-141 (386)
131 2bdt_A BH3686; alpha-beta prot 95.0 0.011 3.7E-07 61.0 3.1 21 1028-1048 3-23 (189)
132 1s96_A Guanylate kinase, GMP k 94.9 0.012 4E-07 63.0 3.3 22 1027-1048 16-37 (219)
133 1lvg_A Guanylate kinase, GMP k 94.9 0.011 3.7E-07 62.0 2.9 23 1027-1049 4-26 (198)
134 4eun_A Thermoresistant glucoki 94.8 0.013 4.4E-07 61.2 3.2 23 1027-1049 29-51 (200)
135 2orw_A Thymidine kinase; TMTK, 94.8 0.013 4.4E-07 60.8 3.1 81 1028-1117 4-87 (184)
136 3c8u_A Fructokinase; YP_612366 94.8 0.014 4.9E-07 61.3 3.4 24 1027-1050 22-45 (208)
137 1u94_A RECA protein, recombina 94.7 0.057 2E-06 61.9 8.6 103 1014-1120 48-155 (356)
138 1vma_A Cell division protein F 94.7 0.013 4.5E-07 65.8 3.2 29 1027-1057 104-132 (306)
139 1f2t_A RAD50 ABC-ATPase; DNA d 94.7 0.019 6.3E-07 57.4 3.9 24 1028-1051 24-47 (149)
140 2vhj_A Ntpase P4, P4; non- hyd 94.7 0.12 4.1E-06 58.1 10.8 34 1027-1062 123-156 (331)
141 1kag_A SKI, shikimate kinase I 94.6 0.015 5.1E-07 58.8 2.9 21 1028-1048 5-25 (173)
142 1kgd_A CASK, peripheral plasma 94.5 0.017 5.7E-07 59.4 3.2 22 1027-1048 5-26 (180)
143 4hcz_A PHD finger protein 1; p 94.4 0.054 1.8E-06 44.3 5.2 44 106-150 6-49 (58)
144 2b8t_A Thymidine kinase; deoxy 94.4 0.043 1.5E-06 58.7 6.2 107 1027-1146 12-124 (223)
145 2v1u_A Cell division control p 94.4 0.079 2.7E-06 60.4 8.8 24 1027-1050 44-67 (387)
146 1jbk_A CLPB protein; beta barr 94.4 0.074 2.5E-06 53.6 7.7 24 1027-1050 43-66 (195)
147 1rj9_A FTSY, signal recognitio 94.4 0.024 8.1E-07 63.7 4.2 24 1027-1050 102-125 (304)
148 1tf7_A KAIC; homohexamer, hexa 94.3 0.033 1.1E-06 67.3 5.6 25 1027-1051 281-305 (525)
149 1xp8_A RECA protein, recombina 94.2 0.11 3.7E-06 59.9 9.2 101 1014-1119 59-165 (366)
150 3qks_A DNA double-strand break 94.2 0.034 1.2E-06 58.4 4.7 25 1028-1052 24-48 (203)
151 2j41_A Guanylate kinase; GMP, 94.2 0.023 7.9E-07 59.1 3.3 22 1027-1048 6-27 (207)
152 2p65_A Hypothetical protein PF 94.1 0.071 2.4E-06 53.7 6.8 24 1027-1050 43-66 (187)
153 3tau_A Guanylate kinase, GMP k 94.0 0.026 9E-07 59.4 3.4 22 1027-1048 8-29 (208)
154 1knq_A Gluconate kinase; ALFA/ 94.0 0.025 8.6E-07 57.3 3.2 23 1027-1049 8-30 (175)
155 2bbw_A Adenylate kinase 4, AK4 94.0 0.025 8.4E-07 61.1 3.2 22 1027-1048 27-48 (246)
156 3aez_A Pantothenate kinase; tr 93.8 0.032 1.1E-06 62.8 3.8 24 1027-1050 90-113 (312)
157 3h4m_A Proteasome-activating n 93.7 0.099 3.4E-06 57.3 7.6 23 1027-1049 51-73 (285)
158 1l8q_A Chromosomal replication 93.7 0.097 3.3E-06 58.7 7.6 23 1028-1050 38-60 (324)
159 1tf7_A KAIC; homohexamer, hexa 93.7 0.027 9.4E-07 68.0 3.2 38 1017-1054 29-66 (525)
160 3uie_A Adenylyl-sulfate kinase 93.7 0.033 1.1E-06 58.0 3.5 25 1027-1051 25-49 (200)
161 1njg_A DNA polymerase III subu 93.7 0.042 1.4E-06 57.7 4.2 22 1028-1049 46-67 (250)
162 1nij_A Hypothetical protein YJ 93.6 0.028 9.6E-07 63.4 2.9 22 1027-1048 4-25 (318)
163 3kl4_A SRP54, signal recogniti 93.6 0.051 1.7E-06 63.8 5.1 31 1027-1059 97-127 (433)
164 3t15_A Ribulose bisphosphate c 93.5 0.15 5E-06 56.7 8.6 24 1027-1050 36-59 (293)
165 1v5w_A DMC1, meiotic recombina 93.5 0.024 8.3E-07 64.7 2.2 37 1017-1053 111-148 (343)
166 1sq5_A Pantothenate kinase; P- 93.4 0.037 1.3E-06 62.1 3.4 23 1027-1049 80-102 (308)
167 2v9p_A Replication protein E1; 93.4 0.033 1.1E-06 62.5 2.9 42 1017-1063 117-161 (305)
168 2qgz_A Helicase loader, putati 93.3 0.033 1.1E-06 62.6 2.8 25 1028-1052 153-177 (308)
169 4f4c_A Multidrug resistance pr 93.2 0.79 2.7E-05 61.4 16.3 58 993-1063 415-472 (1321)
170 2if2_A Dephospho-COA kinase; a 93.2 0.041 1.4E-06 57.2 3.1 21 1029-1049 3-23 (204)
171 3g5u_A MCG1178, multidrug resi 93.1 0.12 4.1E-06 69.1 8.2 34 1014-1048 404-437 (1284)
172 1p9r_A General secretion pathw 93.1 0.039 1.3E-06 64.7 3.1 22 1027-1048 167-188 (418)
173 3b9p_A CG5977-PA, isoform A; A 93.0 0.14 4.6E-06 56.6 7.3 23 1027-1049 54-76 (297)
174 1jjv_A Dephospho-COA kinase; P 93.0 0.045 1.5E-06 57.1 3.1 21 1029-1049 4-24 (206)
175 3fdr_A Tudor and KH domain-con 92.9 0.11 3.8E-06 47.5 5.3 47 103-150 27-74 (94)
176 2xk0_A Polycomb protein PCL; t 92.9 0.22 7.7E-06 42.1 6.4 44 104-150 16-59 (69)
177 3g5u_A MCG1178, multidrug resi 92.7 0.084 2.9E-06 70.5 5.9 44 1106-1150 1189-1232(1284)
178 3llm_A ATP-dependent RNA helic 92.7 0.075 2.6E-06 56.9 4.4 27 1028-1054 77-103 (235)
179 3euj_A Chromosome partition pr 92.6 0.065 2.2E-06 63.7 4.1 23 1028-1050 30-52 (483)
180 1rz3_A Hypothetical protein rb 92.6 0.061 2.1E-06 56.1 3.5 23 1027-1049 22-44 (201)
181 2ce7_A Cell division protein F 92.5 0.35 1.2E-05 57.5 10.3 22 1028-1049 50-71 (476)
182 1ls1_A Signal recognition part 92.5 0.1 3.4E-06 58.2 5.3 31 1027-1059 98-128 (295)
183 3vaa_A Shikimate kinase, SK; s 92.5 0.062 2.1E-06 55.9 3.3 35 1013-1048 12-46 (199)
184 2z43_A DNA repair and recombin 92.3 0.044 1.5E-06 61.9 2.1 27 1027-1053 107-133 (324)
185 3pfi_A Holliday junction ATP-d 92.3 0.12 4.1E-06 58.2 5.6 64 1028-1119 56-119 (338)
186 3t61_A Gluconokinase; PSI-biol 92.3 0.059 2E-06 56.1 2.8 23 1027-1049 18-40 (202)
187 3auy_A DNA double-strand break 92.3 0.076 2.6E-06 61.2 4.0 25 1028-1052 26-50 (371)
188 4e22_A Cytidylate kinase; P-lo 92.2 0.065 2.2E-06 58.2 3.2 22 1027-1048 27-48 (252)
189 2pez_A Bifunctional 3'-phospho 92.1 0.074 2.5E-06 54.1 3.3 31 1027-1059 5-35 (179)
190 2ius_A DNA translocase FTSK; n 92.1 0.1 3.5E-06 62.5 5.0 74 1029-1102 169-251 (512)
191 3b9q_A Chloroplast SRP recepto 92.1 0.073 2.5E-06 59.6 3.5 25 1027-1051 100-124 (302)
192 3dm5_A SRP54, signal recogniti 92.0 0.085 2.9E-06 62.0 4.0 32 1027-1060 100-131 (443)
193 2xau_A PRE-mRNA-splicing facto 91.9 0.057 2E-06 68.3 2.7 22 1028-1049 110-131 (773)
194 2eqk_A Tudor domain-containing 91.9 0.17 5.9E-06 45.1 4.9 47 104-150 22-68 (85)
195 3ney_A 55 kDa erythrocyte memb 91.9 0.083 2.8E-06 55.4 3.4 22 1027-1048 19-40 (197)
196 2gza_A Type IV secretion syste 91.8 0.069 2.3E-06 61.4 2.9 22 1027-1048 175-196 (361)
197 2i1q_A DNA repair and recombin 91.8 0.083 2.8E-06 59.4 3.6 29 1026-1054 97-125 (322)
198 1cke_A CK, MSSA, protein (cyti 91.7 0.083 2.8E-06 55.7 3.2 21 1028-1048 6-26 (227)
199 3d8b_A Fidgetin-like protein 1 91.5 0.51 1.7E-05 53.9 9.8 21 1028-1048 118-138 (357)
200 3m6a_A ATP-dependent protease 91.5 0.14 4.7E-06 62.2 5.3 24 1028-1051 109-132 (543)
201 2vp4_A Deoxynucleoside kinase; 91.5 0.062 2.1E-06 57.4 2.0 23 1027-1049 20-42 (230)
202 1lv7_A FTSH; alpha/beta domain 91.4 0.35 1.2E-05 52.1 8.0 21 1029-1049 47-67 (257)
203 2o5v_A DNA replication and rep 91.4 0.1 3.6E-06 59.8 3.8 23 1029-1051 28-50 (359)
204 2og2_A Putative signal recogni 91.4 0.1 3.6E-06 59.7 3.8 25 1027-1051 157-181 (359)
205 1ypw_A Transitional endoplasmi 91.3 0.32 1.1E-05 61.8 8.5 21 1028-1048 239-259 (806)
206 3pvs_A Replication-associated 91.2 0.31 1.1E-05 57.5 7.8 22 1028-1049 51-72 (447)
207 1w1w_A Structural maintenance 91.2 0.1 3.5E-06 61.3 3.6 25 1027-1051 26-50 (430)
208 2orv_A Thymidine kinase; TP4A 91.1 0.14 5E-06 54.7 4.3 105 1027-1147 19-125 (234)
209 2qm8_A GTPase/ATPase; G protei 91.1 0.096 3.3E-06 59.6 3.1 24 1027-1050 55-78 (337)
210 3tqc_A Pantothenate kinase; bi 91.1 0.12 4E-06 58.4 3.8 23 1027-1049 92-114 (321)
211 1lw7_A Transcriptional regulat 91.1 0.086 3E-06 60.5 2.7 34 1013-1049 159-192 (365)
212 3syl_A Protein CBBX; photosynt 90.8 0.86 2.9E-05 50.3 10.6 23 1029-1051 69-91 (309)
213 2e5q_A PHD finger protein 19; 90.8 0.26 8.9E-06 40.8 4.5 44 106-150 10-53 (63)
214 2diq_A Tudor and KH domain-con 90.8 0.16 5.5E-06 47.9 3.8 51 104-157 33-84 (110)
215 2qz4_A Paraplegin; AAA+, SPG7, 90.7 0.41 1.4E-05 51.4 7.7 22 1028-1049 40-61 (262)
216 2x8a_A Nuclear valosin-contain 90.7 0.11 3.6E-06 57.3 2.9 20 1030-1049 47-66 (274)
217 1hqc_A RUVB; extended AAA-ATPa 90.6 0.15 5.2E-06 56.8 4.1 64 1028-1119 39-103 (324)
218 2qt1_A Nicotinamide riboside k 90.6 0.13 4.6E-06 53.5 3.4 22 1027-1048 21-42 (207)
219 2qor_A Guanylate kinase; phosp 90.5 0.12 4.1E-06 53.9 3.0 22 1027-1048 12-33 (204)
220 2oap_1 GSPE-2, type II secreti 90.5 0.098 3.4E-06 62.9 2.6 21 1028-1048 261-281 (511)
221 1sxj_D Activator 1 41 kDa subu 90.5 0.48 1.6E-05 53.3 8.2 23 1030-1052 61-83 (353)
222 1d2n_A N-ethylmaleimide-sensit 90.4 0.31 1.1E-05 53.1 6.4 24 1027-1050 64-87 (272)
223 1tq4_A IIGP1, interferon-induc 90.3 0.15 5.2E-06 59.5 3.9 20 1029-1048 71-90 (413)
224 1xx6_A Thymidine kinase; NESG, 90.2 0.3 1E-05 50.8 5.7 82 1027-1117 8-92 (191)
225 2qag_B Septin-6, protein NEDD5 90.1 0.12 4E-06 60.6 2.8 33 1017-1050 31-65 (427)
226 2ze6_A Isopentenyl transferase 90.1 0.14 4.8E-06 55.6 3.1 20 1029-1048 3-22 (253)
227 3cm0_A Adenylate kinase; ATP-b 90.1 0.14 4.9E-06 52.1 3.1 22 1027-1048 4-25 (186)
228 3kb2_A SPBC2 prophage-derived 89.9 0.15 5.2E-06 50.9 3.1 20 1029-1048 3-22 (173)
229 1svm_A Large T antigen; AAA+ f 89.8 0.14 4.7E-06 59.2 3.0 23 1027-1049 169-191 (377)
230 1qhl_A Protein (cell division 89.8 0.061 2.1E-06 57.7 0.0 24 1028-1051 28-51 (227)
231 4f4c_A Multidrug resistance pr 89.8 0.34 1.1E-05 65.0 7.0 41 1014-1063 1093-1133(1321)
232 1ly1_A Polynucleotide kinase; 89.7 0.17 5.8E-06 51.0 3.2 22 1028-1049 3-24 (181)
233 1xwi_A SKD1 protein; VPS4B, AA 89.6 0.49 1.7E-05 53.2 7.3 22 1028-1049 46-67 (322)
234 2dhr_A FTSH; AAA+ protein, hex 89.6 0.17 5.7E-06 60.6 3.5 21 1029-1049 66-86 (499)
235 2yvu_A Probable adenylyl-sulfa 89.5 0.18 6.2E-06 51.5 3.3 32 1027-1060 13-44 (186)
236 1ixz_A ATP-dependent metallopr 89.5 0.15 5.3E-06 54.9 2.9 20 1030-1049 52-71 (254)
237 2e5p_A Protein PHF1, PHD finge 89.5 0.5 1.7E-05 39.7 5.2 45 105-150 11-55 (68)
238 2r8r_A Sensor protein; KDPD, P 89.5 0.18 6.2E-06 53.8 3.4 112 1029-1154 8-133 (228)
239 2obl_A ESCN; ATPase, hydrolase 89.3 0.17 5.9E-06 57.7 3.3 24 1027-1050 71-94 (347)
240 1zu4_A FTSY; GTPase, signal re 89.0 0.31 1.1E-05 54.9 5.0 30 1027-1058 105-134 (320)
241 2yv5_A YJEQ protein; hydrolase 88.9 0.19 6.6E-06 56.1 3.2 21 1028-1048 166-186 (302)
242 1via_A Shikimate kinase; struc 88.9 0.19 6.4E-06 50.9 2.9 20 1029-1048 6-25 (175)
243 2q6t_A DNAB replication FORK h 88.8 0.42 1.4E-05 56.3 6.3 36 1018-1053 191-226 (444)
244 3lw7_A Adenylate kinase relate 88.8 0.23 7.9E-06 49.4 3.5 26 1028-1059 2-27 (179)
245 4eaq_A DTMP kinase, thymidylat 88.8 0.25 8.5E-06 52.9 3.9 23 1027-1049 26-48 (229)
246 3eie_A Vacuolar protein sortin 88.8 0.56 1.9E-05 52.6 7.0 22 1028-1049 52-73 (322)
247 3vfd_A Spastin; ATPase, microt 88.3 0.77 2.6E-05 52.9 8.0 21 1028-1048 149-169 (389)
248 1iy2_A ATP-dependent metallopr 88.3 0.21 7.1E-06 54.8 2.9 20 1030-1049 76-95 (278)
249 2qby_B CDC6 homolog 3, cell di 88.3 0.56 1.9E-05 53.4 6.7 24 1027-1050 45-68 (384)
250 3co5_A Putative two-component 88.2 0.31 1E-05 47.8 3.8 19 1030-1048 30-48 (143)
251 3nbx_X ATPase RAVA; AAA+ ATPas 88.2 0.27 9.1E-06 58.9 4.0 20 1030-1049 44-63 (500)
252 3uk6_A RUVB-like 2; hexameric 88.2 0.55 1.9E-05 53.3 6.5 23 1028-1050 71-93 (368)
253 3bh0_A DNAB-like replicative h 88.1 0.46 1.6E-05 53.3 5.7 28 1026-1053 67-94 (315)
254 2rhm_A Putative kinase; P-loop 88.0 0.25 8.7E-06 50.4 3.2 22 1027-1048 5-26 (193)
255 3n70_A Transport activator; si 87.9 0.12 4E-06 51.0 0.6 19 1030-1048 27-45 (145)
256 1oix_A RAS-related protein RAB 87.9 0.24 8.1E-06 50.9 2.9 20 1029-1048 31-50 (191)
257 1qhx_A CPT, protein (chloramph 87.8 0.27 9.2E-06 49.6 3.2 21 1028-1048 4-24 (178)
258 2dpy_A FLII, flagellum-specifi 87.8 0.25 8.6E-06 58.2 3.3 23 1027-1049 157-179 (438)
259 1y63_A LMAJ004144AAA protein; 87.7 0.32 1.1E-05 49.8 3.8 22 1027-1048 10-31 (184)
260 3io5_A Recombination and repai 87.7 0.45 1.5E-05 53.4 5.1 88 1029-1119 30-124 (333)
261 1m7g_A Adenylylsulfate kinase; 87.6 0.27 9.4E-06 51.4 3.2 23 1027-1049 25-47 (211)
262 1qvr_A CLPB protein; coiled co 87.6 1.2 4.2E-05 56.8 9.9 80 1028-1117 192-274 (854)
263 2p5t_B PEZT; postsegregational 87.6 0.22 7.5E-06 53.9 2.5 22 1027-1048 32-53 (253)
264 1gvn_B Zeta; postsegregational 87.5 0.29 9.7E-06 54.3 3.4 22 1027-1048 33-54 (287)
265 1vht_A Dephospho-COA kinase; s 87.5 0.28 9.6E-06 51.5 3.2 22 1027-1048 4-25 (218)
266 2f9l_A RAB11B, member RAS onco 87.4 0.27 9.1E-06 50.7 2.9 20 1029-1048 7-26 (199)
267 4b4t_K 26S protease regulatory 87.2 2.4 8.1E-05 49.6 11.1 28 1027-1059 206-233 (428)
268 3nwj_A ATSK2; P loop, shikimat 87.1 0.28 9.5E-06 53.3 2.9 22 1027-1048 48-69 (250)
269 1kht_A Adenylate kinase; phosp 87.0 0.32 1.1E-05 49.5 3.2 22 1028-1049 4-25 (192)
270 3cr8_A Sulfate adenylyltranfer 87.0 0.21 7.3E-06 60.4 2.2 23 1027-1049 369-391 (552)
271 2j9r_A Thymidine kinase; TK1, 86.9 0.47 1.6E-05 50.2 4.5 106 1027-1146 28-136 (214)
272 1u0l_A Probable GTPase ENGC; p 86.9 0.25 8.5E-06 55.1 2.5 21 1028-1048 170-190 (301)
273 1jr3_A DNA polymerase III subu 86.8 0.5 1.7E-05 53.5 5.1 23 1027-1049 38-60 (373)
274 1tue_A Replication protein E1; 86.8 0.23 7.8E-06 52.3 2.0 22 1028-1049 59-80 (212)
275 2vli_A Antibiotic resistance p 86.8 0.27 9.4E-06 49.7 2.6 22 1027-1048 5-26 (183)
276 3u61_B DNA polymerase accessor 86.8 0.99 3.4E-05 50.3 7.4 22 1027-1048 48-69 (324)
277 4b4t_L 26S protease subunit RP 86.7 2.4 8.2E-05 49.7 10.8 28 1027-1059 215-242 (437)
278 2chg_A Replication factor C sm 86.7 0.75 2.6E-05 47.2 6.0 22 1029-1050 40-61 (226)
279 2rcn_A Probable GTPase ENGC; Y 86.6 0.32 1.1E-05 55.6 3.2 21 1028-1048 216-236 (358)
280 1tev_A UMP-CMP kinase; ploop, 86.5 0.35 1.2E-05 49.2 3.2 21 1028-1048 4-24 (196)
281 4ad8_A DNA repair protein RECN 86.4 0.16 5.4E-06 61.2 0.6 24 1028-1051 61-84 (517)
282 1q3t_A Cytidylate kinase; nucl 86.4 0.36 1.2E-05 51.5 3.4 22 1027-1048 16-37 (236)
283 1ex7_A Guanylate kinase; subst 86.3 0.34 1.2E-05 50.2 3.0 20 1028-1047 2-21 (186)
284 2f1r_A Molybdopterin-guanine d 85.9 0.22 7.5E-06 50.9 1.3 21 1028-1048 3-23 (171)
285 2qp9_X Vacuolar protein sortin 85.8 0.82 2.8E-05 52.1 6.1 22 1028-1049 85-106 (355)
286 1np6_A Molybdopterin-guanine d 85.5 0.41 1.4E-05 49.0 3.1 31 1028-1060 7-37 (174)
287 2zan_A Vacuolar protein sortin 85.4 0.74 2.5E-05 54.2 5.7 22 1028-1049 168-189 (444)
288 3iij_A Coilin-interacting nucl 85.2 0.41 1.4E-05 48.5 3.0 21 1028-1048 12-32 (180)
289 1iqp_A RFCS; clamp loader, ext 84.8 0.48 1.6E-05 52.5 3.5 22 1029-1050 48-69 (327)
290 2r62_A Cell division protease 84.8 0.55 1.9E-05 50.8 3.9 21 1029-1049 46-66 (268)
291 2jaq_A Deoxyguanosine kinase; 84.7 0.46 1.6E-05 48.7 3.1 20 1029-1048 2-21 (205)
292 2qnr_A Septin-2, protein NEDD5 84.5 0.4 1.4E-05 53.4 2.7 19 1030-1048 21-39 (301)
293 1ofh_A ATP-dependent HSL prote 84.5 0.34 1.2E-05 53.3 2.1 21 1029-1049 52-72 (310)
294 1sxj_A Activator 1 95 kDa subu 84.3 0.81 2.8E-05 54.9 5.4 23 1027-1049 77-99 (516)
295 2c95_A Adenylate kinase 1; tra 84.3 0.53 1.8E-05 48.1 3.3 22 1027-1048 9-30 (196)
296 1uf9_A TT1252 protein; P-loop, 84.3 0.54 1.8E-05 48.3 3.4 23 1027-1049 8-30 (203)
297 3bgw_A DNAB-like replicative h 84.2 0.98 3.4E-05 53.2 5.9 37 1018-1054 188-224 (444)
298 3e2i_A Thymidine kinase; Zn-bi 84.0 1.3 4.3E-05 47.0 6.0 53 1026-1080 27-82 (219)
299 3e1s_A Exodeoxyribonuclease V, 83.9 0.15 5.1E-06 62.2 -1.2 31 1028-1060 205-235 (574)
300 1pui_A ENGB, probable GTP-bind 83.8 0.29 1E-05 50.6 1.1 22 1027-1048 26-47 (210)
301 3cmw_A Protein RECA, recombina 83.7 1.7 5.8E-05 59.0 8.5 89 1026-1119 731-823 (1706)
302 1nks_A Adenylate kinase; therm 83.7 0.55 1.9E-05 47.7 3.1 21 1029-1049 3-23 (194)
303 1qf9_A UMP/CMP kinase, protein 83.7 0.57 1.9E-05 47.5 3.2 22 1027-1048 6-27 (194)
304 2z0h_A DTMP kinase, thymidylat 83.6 0.56 1.9E-05 47.9 3.1 30 1029-1060 2-31 (197)
305 3ake_A Cytidylate kinase; CMP 83.6 0.56 1.9E-05 48.4 3.1 21 1029-1049 4-24 (208)
306 1gtv_A TMK, thymidylate kinase 83.5 0.32 1.1E-05 50.6 1.2 20 1029-1048 2-21 (214)
307 2ffh_A Protein (FFH); SRP54, s 83.4 0.9 3.1E-05 53.1 5.1 30 1027-1058 98-127 (425)
308 2chq_A Replication factor C sm 83.4 0.72 2.5E-05 50.8 4.2 22 1030-1051 41-62 (319)
309 3hu3_A Transitional endoplasmi 83.3 2.8 9.6E-05 49.9 9.5 21 1028-1048 239-259 (489)
310 1e6c_A Shikimate kinase; phosp 83.3 0.55 1.9E-05 46.9 2.9 21 1028-1048 3-23 (173)
311 3r20_A Cytidylate kinase; stru 83.3 0.58 2E-05 50.3 3.1 21 1028-1048 10-30 (233)
312 2c9o_A RUVB-like 1; hexameric 83.2 0.7 2.4E-05 54.6 4.1 67 1028-1115 64-135 (456)
313 2plr_A DTMP kinase, probable t 83.1 0.61 2.1E-05 48.1 3.2 21 1028-1048 5-25 (213)
314 2wac_A CG7008-PA; unknown func 82.8 1.1 3.7E-05 47.1 5.1 45 104-150 52-97 (218)
315 1t9h_A YLOQ, probable GTPase E 82.5 0.24 8.4E-06 55.4 -0.1 21 1028-1048 174-194 (307)
316 1zd8_A GTP:AMP phosphotransfer 82.4 0.66 2.3E-05 49.0 3.2 22 1027-1048 7-28 (227)
317 3a4m_A L-seryl-tRNA(SEC) kinas 82.4 0.65 2.2E-05 50.4 3.2 31 1027-1059 4-34 (260)
318 2eko_A Histone acetyltransfera 82.2 1 3.6E-05 40.5 3.9 41 103-143 9-54 (87)
319 1odf_A YGR205W, hypothetical 3 82.2 0.72 2.4E-05 51.2 3.5 24 1027-1050 31-54 (290)
320 1ukz_A Uridylate kinase; trans 82.2 0.75 2.6E-05 47.4 3.4 22 1027-1048 15-36 (203)
321 3trf_A Shikimate kinase, SK; a 82.0 0.73 2.5E-05 46.7 3.2 21 1028-1048 6-26 (185)
322 3cmw_A Protein RECA, recombina 82.0 2.5 8.5E-05 57.4 9.1 85 1027-1121 34-127 (1706)
323 3ntk_A Maternal protein tudor; 82.0 1.3 4.5E-05 44.9 5.1 50 103-157 47-97 (169)
324 2ro0_A Histone acetyltransfera 82.0 3.8 0.00013 37.3 7.5 43 105-149 25-72 (92)
325 3dlm_A Histone-lysine N-methyl 82.0 1.3 4.4E-05 46.2 5.0 49 102-150 67-119 (213)
326 2wwf_A Thymidilate kinase, put 81.9 0.75 2.6E-05 47.6 3.3 22 1027-1048 10-31 (212)
327 4b4t_J 26S protease regulatory 81.9 2 6.8E-05 49.8 7.1 28 1027-1059 182-209 (405)
328 1w5s_A Origin recognition comp 81.8 0.4 1.4E-05 55.1 1.3 24 1027-1050 50-75 (412)
329 1nn5_A Similar to deoxythymidy 81.8 0.75 2.6E-05 47.6 3.3 23 1027-1049 9-31 (215)
330 2v54_A DTMP kinase, thymidylat 81.6 0.78 2.7E-05 47.2 3.3 22 1027-1048 4-25 (204)
331 2www_A Methylmalonic aciduria 81.6 0.73 2.5E-05 52.5 3.4 22 1028-1049 75-96 (349)
332 2bwj_A Adenylate kinase 5; pho 81.5 0.76 2.6E-05 47.0 3.2 21 1028-1048 13-33 (199)
333 1ltq_A Polynucleotide kinase; 81.5 0.72 2.5E-05 50.8 3.2 22 1028-1049 3-24 (301)
334 2xb4_A Adenylate kinase; ATP-b 81.3 0.75 2.5E-05 48.6 3.1 20 1029-1048 2-21 (223)
335 4b4t_M 26S protease regulatory 81.3 1.9 6.4E-05 50.6 6.7 28 1027-1059 215-242 (434)
336 2qag_C Septin-7; cell cycle, c 81.2 0.58 2E-05 54.7 2.4 19 1030-1048 34-52 (418)
337 3cf0_A Transitional endoplasmi 81.2 0.74 2.5E-05 51.1 3.2 23 1027-1049 49-71 (301)
338 2v3c_C SRP54, signal recogniti 81.2 3.4 0.00012 48.4 8.9 29 1027-1057 99-127 (432)
339 1sxj_C Activator 1 40 kDa subu 81.2 0.7 2.4E-05 52.1 3.0 22 1030-1051 49-70 (340)
340 3hws_A ATP-dependent CLP prote 81.0 0.62 2.1E-05 53.1 2.5 22 1029-1050 53-74 (363)
341 1wgs_A MYST histone acetyltran 80.9 1.5 5E-05 42.8 4.7 38 105-143 14-55 (133)
342 1q57_A DNA primase/helicase; d 80.7 0.87 3E-05 54.4 3.8 28 1026-1053 241-268 (503)
343 3zvl_A Bifunctional polynucleo 80.7 0.83 2.8E-05 53.3 3.5 33 1015-1048 247-279 (416)
344 2iyv_A Shikimate kinase, SK; t 80.6 0.77 2.6E-05 46.5 2.8 21 1029-1049 4-24 (184)
345 2pbr_A DTMP kinase, thymidylat 80.4 0.86 2.9E-05 46.3 3.1 30 1029-1060 2-31 (195)
346 3cmu_A Protein RECA, recombina 80.3 2.2 7.4E-05 58.7 7.7 101 1014-1119 368-474 (2050)
347 1aky_A Adenylate kinase; ATP:A 80.1 0.93 3.2E-05 47.5 3.3 22 1027-1048 4-25 (220)
348 2pt5_A Shikimate kinase, SK; a 80.0 0.92 3.1E-05 45.1 3.1 20 1029-1048 2-21 (168)
349 1um8_A ATP-dependent CLP prote 79.9 0.65 2.2E-05 53.2 2.2 21 1029-1049 74-94 (376)
350 2p67_A LAO/AO transport system 79.9 0.92 3.1E-05 51.4 3.4 31 1027-1059 56-86 (341)
351 3fb4_A Adenylate kinase; psych 79.8 0.91 3.1E-05 47.3 3.1 20 1029-1048 2-21 (216)
352 1zak_A Adenylate kinase; ATP:A 79.7 0.89 3E-05 47.8 3.0 22 1027-1048 5-26 (222)
353 2cdn_A Adenylate kinase; phosp 79.7 0.96 3.3E-05 46.6 3.2 22 1027-1048 20-41 (201)
354 1xjc_A MOBB protein homolog; s 79.6 1.4 4.8E-05 44.8 4.4 90 1027-1119 4-109 (169)
355 1r6b_X CLPA protein; AAA+, N-t 79.0 6 0.00021 49.6 10.8 81 1028-1116 208-288 (758)
356 1a5t_A Delta prime, HOLB; zinc 78.8 2.1 7.2E-05 48.2 5.9 23 1027-1049 24-46 (334)
357 3dl0_A Adenylate kinase; phosp 78.5 1.1 3.6E-05 46.8 3.1 19 1030-1048 3-21 (216)
358 2wji_A Ferrous iron transport 78.0 1.1 3.7E-05 44.4 2.9 20 1029-1048 5-24 (165)
359 4b9x_A TDRD1, tudor domain-con 77.8 2.3 7.8E-05 45.3 5.5 44 106-150 68-112 (226)
360 1j8m_F SRP54, signal recogniti 77.7 1.5 5.2E-05 48.7 4.3 31 1027-1059 98-128 (297)
361 2wjg_A FEOB, ferrous iron tran 77.7 1.1 3.8E-05 45.1 2.9 20 1029-1048 9-28 (188)
362 4b4t_I 26S protease regulatory 77.2 3.2 0.00011 48.4 6.9 28 1027-1059 216-243 (437)
363 4b4t_H 26S protease regulatory 77.1 3.2 0.00011 48.8 6.9 28 1027-1059 243-270 (467)
364 2lcc_A AT-rich interactive dom 77.0 1.9 6.5E-05 37.9 3.7 39 105-143 7-49 (76)
365 2rnz_A Histone acetyltransfera 76.6 3.4 0.00012 37.7 5.4 37 105-143 27-65 (94)
366 3cmu_A Protein RECA, recombina 76.5 3 0.0001 57.3 7.3 101 1014-1117 717-821 (2050)
367 3t34_A Dynamin-related protein 76.4 11 0.00039 42.5 11.3 31 1029-1067 36-67 (360)
368 1e4v_A Adenylate kinase; trans 75.8 1.3 4.5E-05 46.2 2.9 19 1030-1048 3-21 (214)
369 3ice_A Transcription terminati 75.8 4 0.00014 47.0 7.0 25 1028-1052 175-199 (422)
370 4ag6_A VIRB4 ATPase, type IV s 75.5 1.1 3.8E-05 51.6 2.4 24 1029-1052 37-60 (392)
371 1uj2_A Uridine-cytidine kinase 75.2 1.5 5.2E-05 47.1 3.3 22 1027-1048 22-43 (252)
372 1w4r_A Thymidine kinase; type 75.2 1.5 5E-05 45.7 3.0 50 1027-1078 20-71 (195)
373 3tlx_A Adenylate kinase 2; str 75.1 1.6 5.3E-05 46.9 3.3 22 1027-1048 29-50 (243)
374 2gj8_A MNME, tRNA modification 75.0 1.5 5E-05 44.0 2.9 20 1029-1048 6-25 (172)
375 2f6r_A COA synthase, bifunctio 74.8 1.6 5.4E-05 48.0 3.4 22 1027-1048 75-96 (281)
376 2zej_A Dardarin, leucine-rich 74.6 1.3 4.4E-05 44.8 2.4 19 1030-1048 5-23 (184)
377 1ni3_A YCHF GTPase, YCHF GTP-b 74.5 1.8 6.1E-05 50.1 3.8 21 1028-1048 21-41 (392)
378 1zuh_A Shikimate kinase; alpha 74.4 1.7 5.7E-05 43.3 3.1 21 1028-1048 8-28 (168)
379 3k1j_A LON protease, ATP-depen 74.3 1.4 4.7E-05 54.1 2.9 22 1028-1049 61-82 (604)
380 3be4_A Adenylate kinase; malar 74.2 1.6 5.5E-05 45.7 3.1 21 1028-1048 6-26 (217)
381 3foz_A TRNA delta(2)-isopenten 74.2 1.8 6.1E-05 48.4 3.6 34 1027-1065 10-44 (316)
382 4fcw_A Chaperone protein CLPB; 74.0 1.6 5.3E-05 48.1 3.1 23 1029-1051 49-71 (311)
383 2iut_A DNA translocase FTSK; n 73.8 1.8 6.1E-05 52.3 3.7 25 1029-1053 216-240 (574)
384 1a7j_A Phosphoribulokinase; tr 73.6 1.4 4.7E-05 48.8 2.5 23 1027-1049 5-27 (290)
385 4edh_A DTMP kinase, thymidylat 73.0 1.9 6.6E-05 45.4 3.3 32 1027-1060 6-37 (213)
386 3crm_A TRNA delta(2)-isopenten 72.9 1.8 6.1E-05 48.7 3.2 33 1028-1065 6-39 (323)
387 3h8z_A FragIle X mental retard 72.9 3.8 0.00013 39.6 5.0 37 105-143 62-102 (128)
388 3d3q_A TRNA delta(2)-isopenten 72.6 1.8 6.1E-05 49.0 3.1 33 1028-1065 8-41 (340)
389 3upu_A ATP-dependent DNA helic 72.4 1.6 5.5E-05 51.5 2.8 28 1029-1058 47-74 (459)
390 2grj_A Dephospho-COA kinase; T 71.9 2 6.9E-05 44.4 3.1 23 1027-1049 12-34 (192)
391 3exa_A TRNA delta(2)-isopenten 71.8 2 6.8E-05 48.1 3.2 33 1028-1065 4-37 (322)
392 3lv8_A DTMP kinase, thymidylat 71.4 2.2 7.4E-05 45.8 3.3 30 1027-1058 27-56 (236)
393 2r2a_A Uncharacterized protein 71.2 2.4 8.1E-05 44.2 3.5 19 1028-1046 6-24 (199)
394 3cf2_A TER ATPase, transitiona 71.0 4.4 0.00015 51.1 6.4 22 1027-1048 238-259 (806)
395 2hqx_A P100 CO-activator tudor 71.0 3.5 0.00012 44.3 4.9 44 104-149 66-110 (246)
396 1c9k_A COBU, adenosylcobinamid 70.9 2 6.9E-05 44.1 2.8 20 1029-1048 1-20 (180)
397 2ocp_A DGK, deoxyguanosine kin 70.4 2.3 8E-05 45.2 3.3 22 1027-1048 2-23 (241)
398 1ypw_A Transitional endoplasmi 70.0 1.3 4.5E-05 56.2 1.4 24 1027-1050 511-534 (806)
399 2ga8_A Hypothetical 39.9 kDa p 69.9 2.2 7.6E-05 48.5 3.1 24 1028-1051 25-48 (359)
400 2h92_A Cytidylate kinase; ross 69.9 2.2 7.6E-05 44.4 3.0 21 1028-1048 4-24 (219)
401 1udx_A The GTP-binding protein 69.6 1.2 4.3E-05 51.8 1.0 21 1028-1048 158-178 (416)
402 3v9p_A DTMP kinase, thymidylat 69.4 2.2 7.6E-05 45.4 2.9 22 1027-1048 25-46 (227)
403 4a1f_A DNAB helicase, replicat 69.2 2.9 0.0001 47.3 3.9 28 1026-1053 45-72 (338)
404 3umf_A Adenylate kinase; rossm 69.0 2.7 9.3E-05 44.5 3.4 23 1026-1048 28-50 (217)
405 4b9w_A TDRD1, tudor domain-con 69.0 5.3 0.00018 41.5 5.6 50 105-157 67-117 (201)
406 3p32_A Probable GTPase RV1496/ 68.9 7.7 0.00026 44.0 7.4 31 1027-1059 79-109 (355)
407 4tmk_A Protein (thymidylate ki 68.6 2.7 9.3E-05 44.3 3.3 30 1027-1058 3-32 (213)
408 1ak2_A Adenylate kinase isoenz 68.5 2.8 9.7E-05 44.3 3.5 23 1027-1049 16-38 (233)
409 1r6b_X CLPA protein; AAA+, N-t 68.4 3.7 0.00013 51.6 5.1 23 1029-1051 490-512 (758)
410 2f5k_A MORF-related gene 15 is 68.3 4.9 0.00017 37.3 4.5 37 105-143 24-62 (102)
411 2bud_A Males-absent on the fir 68.1 7.5 0.00026 35.2 5.5 37 107-144 18-59 (92)
412 1zcb_A G alpha I/13; GTP-bindi 68.0 2.6 9E-05 48.1 3.3 20 1030-1049 36-55 (362)
413 2qmh_A HPR kinase/phosphorylas 67.4 3.1 0.00011 43.5 3.3 35 1028-1068 35-70 (205)
414 3vkw_A Replicase large subunit 66.4 1.1 3.6E-05 52.7 -0.4 23 1026-1048 160-182 (446)
415 2a5y_B CED-4; apoptosis; HET: 66.4 1.6 5.5E-05 52.7 1.1 113 1026-1150 151-277 (549)
416 1g5t_A COB(I)alamin adenosyltr 65.7 6.6 0.00023 40.8 5.5 28 1029-1058 30-57 (196)
417 2zts_A Putative uncharacterize 65.5 4.6 0.00016 42.5 4.4 30 1026-1055 29-58 (251)
418 3ld9_A DTMP kinase, thymidylat 65.5 3.4 0.00012 43.8 3.3 30 1027-1058 21-51 (223)
419 2xtz_A Guanine nucleotide-bind 65.4 3.7 0.00013 46.7 3.8 20 1030-1049 12-31 (354)
420 2ged_A SR-beta, signal recogni 65.0 3.2 0.00011 41.8 2.9 21 1028-1048 49-69 (193)
421 1ega_A Protein (GTP-binding pr 64.8 3.2 0.00011 46.0 3.1 22 1027-1048 8-29 (301)
422 3pxg_A Negative regulator of g 64.2 7.2 0.00025 46.0 6.2 31 1029-1063 203-233 (468)
423 3pxi_A Negative regulator of g 64.1 4.2 0.00014 51.1 4.3 23 1029-1051 523-545 (758)
424 1qvr_A CLPB protein; coiled co 63.8 5.2 0.00018 51.0 5.2 23 1029-1051 590-612 (854)
425 2qtf_A Protein HFLX, GTP-bindi 63.7 3.5 0.00012 47.2 3.1 21 1028-1048 180-200 (364)
426 2dyk_A GTP-binding protein; GT 62.6 3.9 0.00013 39.5 2.9 19 1030-1048 4-22 (161)
427 3lxx_A GTPase IMAP family memb 62.5 3.7 0.00013 43.4 2.9 20 1029-1048 31-50 (239)
428 2eqm_A PHD finger protein 20-l 62.0 29 0.001 31.1 8.2 48 106-154 22-72 (88)
429 2dy1_A Elongation factor G; tr 61.3 17 0.00058 44.9 9.0 116 1027-1151 9-139 (665)
430 3tmk_A Thymidylate kinase; pho 60.9 4.6 0.00016 42.6 3.3 22 1027-1048 5-26 (216)
431 3sr0_A Adenylate kinase; phosp 60.8 4.5 0.00015 42.3 3.1 20 1029-1048 2-21 (206)
432 1vt4_I APAF-1 related killer D 60.8 26 0.00087 45.5 10.4 31 1027-1057 150-181 (1221)
433 1fzq_A ADP-ribosylation factor 60.6 4.1 0.00014 40.9 2.7 20 1029-1048 18-37 (181)
434 1moz_A ARL1, ADP-ribosylation 60.0 3.5 0.00012 41.0 2.0 20 1029-1048 20-39 (183)
435 2ce2_X GTPase HRAS; signaling 59.7 4.7 0.00016 38.9 2.9 19 1030-1048 6-24 (166)
436 1z2a_A RAS-related protein RAB 59.7 4.7 0.00016 39.2 2.9 19 1030-1048 8-26 (168)
437 1p5z_B DCK, deoxycytidine kina 59.1 2.9 0.0001 45.1 1.4 22 1027-1048 24-45 (263)
438 1m2o_B GTP-binding protein SAR 59.1 4.7 0.00016 40.8 2.9 20 1029-1048 25-44 (190)
439 3eph_A TRNA isopentenyltransfe 58.9 4.8 0.00016 46.6 3.1 33 1028-1064 3-35 (409)
440 1ky3_A GTP-binding protein YPT 58.6 5 0.00017 39.6 2.9 20 1029-1048 10-29 (182)
441 2qen_A Walker-type ATPase; unk 58.5 4.9 0.00017 44.5 3.2 21 1028-1048 32-52 (350)
442 4fid_A G protein alpha subunit 58.0 5.2 0.00018 45.2 3.3 20 1030-1049 8-27 (340)
443 1svi_A GTP-binding protein YSX 57.9 5.1 0.00018 40.3 2.9 21 1028-1048 24-44 (195)
444 1z0j_A RAB-22, RAS-related pro 57.8 5.3 0.00018 38.9 2.9 19 1030-1048 9-27 (170)
445 1ek0_A Protein (GTP-binding pr 57.7 5.3 0.00018 38.8 2.9 19 1030-1048 6-24 (170)
446 2erx_A GTP-binding protein DI- 57.7 5.3 0.00018 38.9 2.9 19 1030-1048 6-24 (172)
447 1mky_A Probable GTP-binding pr 57.7 4.7 0.00016 47.1 2.9 20 1029-1048 182-201 (439)
448 3a8t_A Adenylate isopentenyltr 57.6 5.6 0.00019 44.9 3.3 34 1027-1065 40-74 (339)
449 1sky_E F1-ATPase, F1-ATP synth 57.4 13 0.00046 43.7 6.7 27 1028-1054 152-178 (473)
450 1z08_A RAS-related protein RAB 57.4 5.4 0.00018 38.9 2.9 19 1030-1048 9-27 (170)
451 2lkc_A Translation initiation 57.2 5.4 0.00019 39.3 2.9 21 1028-1048 9-29 (178)
452 1u8z_A RAS-related protein RAL 57.2 5.5 0.00019 38.5 2.9 19 1030-1048 7-25 (168)
453 3k53_A Ferrous iron transport 57.2 5 0.00017 43.5 2.9 20 1029-1048 5-24 (271)
454 4hlc_A DTMP kinase, thymidylat 57.2 5.7 0.0002 41.4 3.2 21 1028-1048 3-23 (205)
455 2cxx_A Probable GTP-binding pr 57.0 5.4 0.00019 39.7 2.9 19 1030-1048 4-22 (190)
456 1g16_A RAS-related protein SEC 56.7 5.6 0.00019 38.7 2.9 19 1030-1048 6-24 (170)
457 1wms_A RAB-9, RAB9, RAS-relate 56.6 5.6 0.00019 39.1 2.9 19 1030-1048 10-28 (177)
458 4i1u_A Dephospho-COA kinase; s 56.5 6.1 0.00021 41.5 3.2 45 1029-1079 11-63 (210)
459 1kao_A RAP2A; GTP-binding prot 55.9 6 0.0002 38.2 2.9 19 1030-1048 6-24 (167)
460 2fna_A Conserved hypothetical 55.8 5.7 0.0002 44.0 3.1 22 1028-1049 31-52 (357)
461 1upt_A ARL1, ADP-ribosylation 55.7 6 0.00021 38.6 2.9 20 1029-1048 9-28 (171)
462 2qag_A Septin-2, protein NEDD5 55.7 4.6 0.00016 46.0 2.3 19 1030-1048 40-58 (361)
463 1f6b_A SAR1; gtpases, N-termin 55.5 5.3 0.00018 40.8 2.6 20 1029-1048 27-46 (198)
464 1nrj_B SR-beta, signal recogni 55.5 5.9 0.0002 40.8 2.9 21 1028-1048 13-33 (218)
465 2wsm_A Hydrogenase expression/ 55.1 6.6 0.00023 40.6 3.3 23 1027-1049 30-52 (221)
466 3pqc_A Probable GTP-binding pr 55.1 6.1 0.00021 39.5 2.9 20 1029-1048 25-44 (195)
467 2bjv_A PSP operon transcriptio 55.0 5.8 0.0002 42.6 2.9 21 1029-1049 31-51 (265)
468 1cip_A Protein (guanine nucleo 55.0 6.3 0.00021 44.8 3.3 21 1030-1050 35-55 (353)
469 2a9k_A RAS-related protein RAL 54.8 6.3 0.00021 39.0 2.9 19 1030-1048 21-39 (187)
470 2e87_A Hypothetical protein PH 54.8 4.9 0.00017 45.6 2.4 20 1029-1048 169-188 (357)
471 2nzj_A GTP-binding protein REM 54.4 6.5 0.00022 38.5 2.9 19 1030-1048 7-25 (175)
472 1f2t_B RAD50 ABC-ATPase; DNA d 54.3 23 0.0008 34.8 6.9 52 1105-1156 80-131 (148)
473 3q85_A GTP-binding protein REM 54.2 6.6 0.00023 38.3 2.9 19 1030-1048 5-23 (169)
474 1z0f_A RAB14, member RAS oncog 54.1 6.6 0.00022 38.5 2.9 20 1029-1048 17-36 (179)
475 3sd4_A PHD finger protein 20; 54.1 24 0.00081 30.1 6.0 37 106-143 15-51 (69)
476 2xdp_A Lysine-specific demethy 54.1 12 0.0004 35.9 4.4 40 102-143 63-102 (123)
477 2y8e_A RAB-protein 6, GH09086P 53.9 6.6 0.00023 38.5 2.9 19 1030-1048 17-35 (179)
478 2bme_A RAB4A, RAS-related prot 53.4 6.8 0.00023 38.9 2.9 19 1030-1048 13-31 (186)
479 1c1y_A RAS-related protein RAP 53.3 7 0.00024 37.9 2.9 19 1030-1048 6-24 (167)
480 3hjn_A DTMP kinase, thymidylat 53.0 7.3 0.00025 40.3 3.1 30 1029-1060 2-31 (197)
481 3bc1_A RAS-related protein RAB 52.6 7.1 0.00024 38.8 2.9 19 1030-1048 14-32 (195)
482 2qqr_A JMJC domain-containing 52.5 11 0.00037 35.8 3.8 35 106-142 8-42 (118)
483 3ihw_A Centg3; RAS, centaurin, 52.5 7.1 0.00024 39.3 2.9 19 1030-1048 23-41 (184)
484 4dsu_A GTPase KRAS, isoform 2B 52.1 7.3 0.00025 38.7 2.9 19 1030-1048 7-25 (189)
485 2fn4_A P23, RAS-related protei 52.1 7.3 0.00025 38.3 2.9 20 1029-1048 11-30 (181)
486 1m7b_A RND3/RHOE small GTP-bin 52.0 7.3 0.00025 38.9 2.9 19 1030-1048 10-28 (184)
487 3tw8_B RAS-related protein RAB 51.9 7 0.00024 38.4 2.7 19 1030-1048 12-30 (181)
488 3con_A GTPase NRAS; structural 51.8 7.5 0.00025 38.9 2.9 20 1029-1048 23-42 (190)
489 3q72_A GTP-binding protein RAD 51.7 7.2 0.00025 37.8 2.7 19 1030-1048 5-23 (166)
490 1r2q_A RAS-related protein RAB 51.4 7.8 0.00027 37.6 2.9 19 1030-1048 9-27 (170)
491 2hf9_A Probable hydrogenase ni 51.2 7.9 0.00027 40.1 3.1 23 1028-1050 39-61 (226)
492 2efe_B Small GTP-binding prote 51.1 7.7 0.00026 38.2 2.9 19 1030-1048 15-33 (181)
493 1x6v_B Bifunctional 3'-phospho 50.7 7.8 0.00027 47.4 3.3 30 1027-1058 52-81 (630)
494 3bdl_A Staphylococcal nuclease 50.6 12 0.0004 45.4 4.9 45 104-150 412-457 (570)
495 1vg8_A RAS-related protein RAB 50.5 7.9 0.00027 39.2 2.9 20 1029-1048 10-29 (207)
496 2hxs_A RAB-26, RAS-related pro 50.5 8.1 0.00028 38.0 2.9 19 1030-1048 9-27 (178)
497 2oil_A CATX-8, RAS-related pro 50.4 8 0.00027 38.8 2.9 19 1030-1048 28-46 (193)
498 2gno_A DNA polymerase III, gam 50.1 25 0.00085 38.9 7.1 76 1027-1120 18-96 (305)
499 1sxj_B Activator 1 37 kDa subu 50.0 7.7 0.00026 42.4 2.9 21 1030-1050 45-65 (323)
500 3tqf_A HPR(Ser) kinase; transf 49.8 9.5 0.00033 39.0 3.2 30 1028-1063 17-46 (181)
No 1
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=100.00 E-value=1.3e-151 Score=1457.89 Aligned_cols=853 Identities=39% Similarity=0.658 Sum_probs=692.3
Q ss_pred cccccccchhcccccCccCC-CccccCCCCCCCCCCCCCCCCCCcccccCCCHHHHHHHHHHHhCCCeEEEEeeCceEEE
Q 001077 278 GDVSERFSAREADKFHFLGP-DRRDAKRRRPGDVYYDPRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVIFFKMGKFYEL 356 (1162)
Q Consensus 278 ~~~~~~~~~~~~~~~~fl~~-~~rD~~~r~p~~~~ydp~Tl~iP~~~~~~lTP~~~Qyw~iK~~~~D~VLfFkvGkFYEl 356 (1162)
|+..+++..|.|++|+||+| +|||++||||+||+|||||||||+++|+++||||||||+||++|||+||||||||||||
T Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~~rD~~~r~~~~p~ydp~tl~ip~~~~~~~TPmm~Qy~~iK~~~~d~llffr~GdFYEl 97 (1022)
T 2o8b_B 18 GDDSSRPTVWYHETLEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKVGKFYEL 97 (1022)
T ss_dssp ------CCSCGGGGCGGGSTTTCCCTTCCCTTSTTCCTTCCCCCHHHHTTSCHHHHHHHHHHHHCTTSEEEEEETTEEEE
T ss_pred CCccccccccccccchhcCccccccccCCCCCCCCCCCCcccCCchhhccCCHHHHHHHHHHHhCCCEEEEEECCCEEEE
Confidence 56678888999999999997 79999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccHHHHhhhcceeeecCCCCcCCcCcccHhHHHHHHHHcCCeEEEEecCCChHHHHHHhhhcC---CCCceeeeeEEE
Q 001077 357 FEMDAHVGAKELDLQYMKGEQPHCGFPERNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKG---SKDKVVKREICA 433 (1162)
Q Consensus 357 f~~DA~i~a~~L~L~~t~g~~p~~GfPe~sl~~y~~kLV~~GyKVavvEQ~Et~~~~~~r~k~~g---~k~~vv~Rev~~ 433 (1162)
|++||+++|++|||++|+|++||||||+|+++.|+++||++|||||||||+|+|++++.|.+.++ +++++|+||||+
T Consensus 98 f~~DA~~~a~~L~i~lt~~~~pmaGvP~ha~~~yl~~Lv~~GykVai~eQ~e~p~~~~~r~~~~~~~~k~~~~v~Rev~r 177 (1022)
T 2o8b_B 98 YHMDALIGVSELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICR 177 (1022)
T ss_dssp EHHHHHHHHHHHCCCCCSSSSCEEEEEGGGHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHTCSSCCSGGGSCCEEEEE
T ss_pred ehhhHHHHHHhcCeEEecCCCCCCCCchhHHHHHHHHHHHCCCeEEEEeCCCCchhhhhhhhhcccccccCCceeeeEEE
Confidence 99999999999999999999999999999999999999999999999999999998888877543 446899999999
Q ss_pred EeeCceeeeccc---cCCCCCCcEEEEEEecCCCCCCCCCCceEEEEEEEcCCCeEEEEEEcCccchhHHHHHHHccCcc
Q 001077 434 VVTKGTLTEGEL---LSANPDASYLMALTESNQSPASQSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPV 510 (1162)
Q Consensus 434 ViTpGTl~d~~~---l~~~~~~~yllaI~e~~~~~~~~~~~~~~Gva~vD~sTg~~~l~~f~Dd~~~s~L~t~L~~~~P~ 510 (1162)
||||||++|+.+ +. ...++||+||++.... ..+....||+||+|++||+|++++|.|+..+++|.+.|.+++|+
T Consensus 178 vvTpGT~~d~~~~~~l~-~~~~n~l~ai~~~~~~--~~~~~~~~Gla~~D~sTGe~~~~e~~d~~~~~~L~~~L~~~~P~ 254 (1022)
T 2o8b_B 178 IITKGTQTYSVLEGDPS-ENYSKYLLSLKEKEED--SSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPV 254 (1022)
T ss_dssp EECTTSCCCCTTSCCCS-CSSCCEEEEEEEEECS--CC-CCEEEEEEEECTTTCCEEEEEEEECSSCHHHHHHHHHSCEE
T ss_pred EECCCeeeccccccccc-CCCCcEEEEEEEcccc--ccCCCcEEEEEEEECCCCEEEEEEecCchHHHHHHHHHHhcCCc
Confidence 999999999874 33 3468999999974211 01123579999999999999999999998899999999999999
Q ss_pred EEEecCCCCChHHHHHHHhccCCCccccccCCccccChhhhHHHHH--HHHhhcccccccccccccccccccCCCCcccc
Q 001077 511 EIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIK--NIYNRITAESLNKADSNVANSQAEGDGLTCLP 588 (1162)
Q Consensus 511 EIi~~~~~~s~~t~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 588 (1162)
|||++.+..+..+.+.+.......+...+.+..+||+...+...+. .+|..... ......||
T Consensus 255 Eil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~~~~----------------~~~~~~~~ 318 (1022)
T 2o8b_B 255 QVLFEKGNLSKETKTILKSSLSCSLQEGLIPGSQFWDASKTLRTLLEEEYFREKLS----------------DGIGVMLP 318 (1022)
T ss_dssp EEEEETTTCCHHHHHHHTTTTTTSEEEEECBTTTBCCHHHHHHHHHHTTTTSSSSC----------------CCC-CCCC
T ss_pred EEEecCCccchHHHHHHHhhhhhhhhhhcccchhhcchhhHHhhhhhhhhcccccc----------------cccchhhH
Confidence 9999988777776665543222222222235567898776655443 33332110 00113566
Q ss_pred hhhhhhhcc----C----CChhHHHHHHHHHHHHHHHhccchhhccccceeecCCCCC----------ccCCCCCeeecC
Q 001077 589 GILSELIST----G----DSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGF----------GDMAKKPYMVLD 650 (1162)
Q Consensus 589 ~~l~~l~~~----~----~~~~~al~Algall~YL~~~~~~~~ll~~~~f~~~~~~~~----------~~~~~~~~M~LD 650 (1162)
..+..+... + .+..++++|+|++|+||+.++++..++..++|..+..... ......+||+||
T Consensus 319 ~~l~~~~~~~~~~~~~~~~~~~~a~~A~gall~Yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~LD 398 (1022)
T 2o8b_B 319 QVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSGAIFTKAYQRMVLD 398 (1022)
T ss_dssp HHHHHTEECCSTTCSEECGGGHHHHHHHHHHHHHHHHHTCHHHHHTTCCEEECCCGGGGTCC---------CCCCBCBCC
T ss_pred HHHHHhhcchhhcccccccccHHHHHHHHHHHHHHHHhCcchhhhccccccccccccccccccccccccccCCCCeEEeC
Confidence 665543311 1 1346789999999999999988766655555544421110 013456799999
Q ss_pred HHHHHHccCccccCCCCCcccHHHHHhhhcChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhcCCchhHHHHHHHhCCC
Q 001077 651 APALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPFALEFRKALSRL 730 (1162)
Q Consensus 651 ~~Tl~~LEI~~~~~~g~~~gSL~~lLn~~~T~~GkRlLr~wl~~PL~d~~~I~~R~daVe~l~~~~~~~~~~lr~~L~~l 730 (1162)
++|++||||++|.++|+.+||||++||+|+|+||+||||+||++||+|++.|++|||+|++|+. +..++..++..|+++
T Consensus 399 ~~T~~nLEl~~~~~~g~~~gSLl~~Ld~t~T~mG~RLLr~WL~~PL~d~~~I~~RldaVe~l~~-~~~~~~~l~~~L~~i 477 (1022)
T 2o8b_B 399 AVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMV-VPDKISEVVELLKKL 477 (1022)
T ss_dssp HHHHHHTTCSSCCSSSSCCCSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHT-CHHHHHHHHHHHTTC
T ss_pred HHHHHhhcCCccCCCCCCCCcHHHHhCcCCCchhHHHHHHHHhCccCCHHHHHHHHHHHHHHHh-ChHHHHHHHHHHhcC
Confidence 9999999999998888889999999999999999999999999999999999999999999996 567788999999999
Q ss_pred CcHHHHHHHHhccccc---cCCCCccchhhHHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHhhhcC--
Q 001077 731 PDMERLLARLFASSEA---NGRNSNKVVLYEDA--AKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHHILTP-- 803 (1162)
Q Consensus 731 pDleRll~ri~~~~~~---~~~~~~~~~~~~~~--~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~l~~~-- 803 (1162)
|||||+++||+..+.. ..+...++++|++. ..+++.+|+..+.++..+..+...+........+.+|..+...
T Consensus 478 ~DlERll~Ri~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~i~~~l~~~~~~~~s~lL~~~~~~~~ 557 (1022)
T 2o8b_B 478 PDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISLQT 557 (1022)
T ss_dssp CCHHHHHHHHHHHHCHHHHHHCGGGGCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHTSBTT
T ss_pred ccHHHHHHHHHhcCCcccccccchhhhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccCcHHHHHHHHhhc
Confidence 9999999999762211 01122334555542 4677888888876666555544444333334556777776532
Q ss_pred ---CCCchhHHHHHHHHHhhcchhhhcCCCceeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEeCCc
Q 001077 804 ---GKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTIGKD 880 (1162)
Q Consensus 804 ---~~~~~~l~~~l~~i~~~id~~~~~~~g~i~~~~G~d~~lD~~~~~l~~i~~~L~~~l~~~~~~l~~~~i~~~~~~~~ 880 (1162)
...++++.++++.|..+||.+.+.+.|.+++++|++++||++++.+++++++|.++++++++.++.++++|++++++
T Consensus 558 ~~~~~~~~~l~~~~~~~~~~id~~~~~~~g~i~~~~g~~~~ld~~r~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 637 (1022)
T 2o8b_B 558 KNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRN 637 (1022)
T ss_dssp TSSSSCBCCCHHHHHHHHTTSCHHHHHHSCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHTSSGGGSSCSCCEEECCGGG
T ss_pred cccccchHHHHHHHHHHHHHhCchhhhcCCcEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeEEEecCc
Confidence 14678888989999999998766678888899999999999999999999999999988888888888999999889
Q ss_pred eEEEEccccccCC-CCCcEEEeeeccceEEEeChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 001077 881 LYLLEVPESLRGS-VPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAATA 959 (1162)
Q Consensus 881 ~y~iev~~~~~~~-vp~~~~~~ss~k~~~ry~tp~l~~l~~el~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~la 959 (1162)
+|+|+|+...... +|++|+..+++++..||+||++.+++.++..+++++...+.+++.++++.+.++...|..+++++|
T Consensus 638 ~y~i~v~~~~~~~~vp~~~~~~~t~~~~~rf~t~el~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~la 717 (1022)
T 2o8b_B 638 RYQLEIPENFTTRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIA 717 (1022)
T ss_dssp CCEEEECTTTTSSCCCC-CEEEEETTEEEECCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred eEEEEEehhhhcccCCCceEEeeeccCccEEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988777 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCccceeEcCCCCCCCCcEEEeeccCCccccccCCCCcccccceecCCCC------CcceEEEE
Q 001077 960 ELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHG------NASFILLT 1033 (1162)
Q Consensus 960 ~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi~l~~~~------~~~~~IIT 1033 (1162)
+||||+|||.+|.....+||||+|.+. .++.+.|.|++||||+|+.. ...+.|||||+.|+... .+++++||
T Consensus 718 ~lD~l~s~A~~a~~~~~~~~~P~~~~~-~~~~~~l~i~~~rHP~l~~~-~~~~~~v~ndi~l~~~~~~~~~~~g~i~~It 795 (1022)
T 2o8b_B 718 VLDVLLCLANYSRGGDGPMCRPVILLP-EDTPPFLELKGSRHPCITKT-FFGDDFIPNDILIGCEEEEQENGKAYCVLVT 795 (1022)
T ss_dssp HHHHHHHHHHHTTCSSSCEECCEECCT-TTSCCCEEEEEECCCC-------CCCCCCEEEEESCCCSCC---CCCEEEEE
T ss_pred HHHHHHhHHHHHhhccCCccCCccccC-CCCCceEEEEeccccEEEEE-ecCCceEeeeeeeccccccccCCCCcEEEEE
Confidence 999999999999743558999999842 11345799999999999752 22347999999997532 14799999
Q ss_pred ccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCCCCcEEEEc
Q 001077 1034 GPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLD 1113 (1162)
Q Consensus 1034 GPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlD 1113 (1162)
||||||||||||++||+++|||+||||||+.+.++++|+||+|+|+.|++..|.||||+||.+++.|+..|+++||||||
T Consensus 796 GpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~~~sLlLLD 875 (1022)
T 2o8b_B 796 GPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVD 875 (1022)
T ss_dssp CCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCCCChHHHHHHHHHHHHHhheeEEeccCcCCCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHHH-hhcc-cCceEEEehhhhccc
Q 001077 1114 ELGRGTSTSDGQAIAVFSSG-FQSL-AGSQFLSTLFIKCNA 1152 (1162)
Q Consensus 1114 ELGRGTst~DG~AIA~A~~~-~~~l-~~~~~~~th~~~~~~ 1152 (1162)
|+||||++.||.+++|++.+ +.+. ..+++++||++.+..
T Consensus 876 Ep~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~ 916 (1022)
T 2o8b_B 876 ELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVE 916 (1022)
T ss_dssp CTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 99999999999999999988 4433 678999999986654
No 2
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=100.00 E-value=1.1e-129 Score=1235.63 Aligned_cols=763 Identities=28% Similarity=0.441 Sum_probs=595.5
Q ss_pred cCCCHHHHHHHHHHHhCCCeEEEEeeCceEEEecccHHHHhhhcceeeecC-CCCcCCcCcccHhHHHHHHHHcCCeEEE
Q 001077 325 RNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG-EQPHCGFPERNFSMNVEKLARKGYRVLV 403 (1162)
Q Consensus 325 ~~lTP~~~Qyw~iK~~~~D~VLfFkvGkFYElf~~DA~i~a~~L~L~~t~g-~~p~~GfPe~sl~~y~~kLV~~GyKVav 403 (1162)
+++||||||||+||++|||+|||||||||||||++||+++|++|||+++.+ ++||||||+|+++.|+++||++||||||
T Consensus 11 ~~~TPmm~Qy~~iK~~~~D~lLffr~GdFYElF~eDA~~as~~L~i~lt~~~~~pmaGvP~ha~~~yl~rLv~~G~kVai 90 (918)
T 3thx_B 11 SIYTPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLFVHVRRLVAKGYKVGV 90 (918)
T ss_dssp TTSCHHHHHHHHHHTTTTTSEEEEECSSEEEEEHHHHHHHHHHHTCCCEEETTEEEEEEEGGGHHHHHHHHHHHTCCEEE
T ss_pred CCCCHHHHHHHHHHHHCCCeEEEEEcCCEeeeeHhhHHHHHHHhCceeecCCCeeEEeccHhHHHHHHHHHHHcCCcEEE
Confidence 479999999999999999999999999999999999999999999998765 6899999999999999999999999999
Q ss_pred EecCCChHHHHHHhhhcCCCCceeeeeEEEEeeCceeeeccc---------------cCCCCCCcEEEEEEecCCCCCC-
Q 001077 404 VEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGEL---------------LSANPDASYLMALTESNQSPAS- 467 (1162)
Q Consensus 404 vEQ~Et~~~~~~r~k~~g~k~~vv~Rev~~ViTpGTl~d~~~---------------l~~~~~~~yllaI~e~~~~~~~- 467 (1162)
|||+|+|++++ ..++|+++|+|||||||||||++|+++ +. +..+|||+||++...+...
T Consensus 91 ~eQ~E~p~~k~----~~~~k~~~v~R~v~rvvTpGT~~d~~~~~~~~~~~~~~~~~~l~-~~~~nyL~ai~~~~~~~~~~ 165 (918)
T 3thx_B 91 VKQTETAALKA----IGDNRSSLFSRKLTALYTKSTLIGEDVNPLIKLDDAVNVDEIMT-DTSTSYLLCISENKENVRDK 165 (918)
T ss_dssp EEECSCHHHHT----TSTTCSSCCCEEEEEEECTTCCCSTTTCCEEEC--CEEECCCSC-TTSCCCEEEEEEEC------
T ss_pred EeccCChhhhh----cccccCCceeeeEEEEECCCcccccccccccccccccccccccC-CCCCcEEEEEEecccccccc
Confidence 99999998632 112455799999999999999999876 43 3468999999975422100
Q ss_pred CCCCceEEEEEEEcCCCeEEEEEEcCccchhHHHHHHHccCccEEEecCCCCChHHHHHHHhcc----C-CCccccccCC
Q 001077 468 QSTDRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHT----R-NPLVNDLVPL 542 (1162)
Q Consensus 468 ~~~~~~~Gva~vD~sTg~~~l~~f~Dd~~~s~L~t~L~~~~P~EIi~~~~~~s~~t~~~l~~~~----~-~~~~~~~~~~ 542 (1162)
..+...||+||+|++||+|.+++|.|+..+++|.+.|.+++|+|||++.+ ++..+.+++.... . ........+
T Consensus 166 ~~~~~~~Gla~~D~sTGef~~~~f~d~~~~~~L~~~L~~~~P~Eil~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 243 (918)
T 3thx_B 166 KKGNIFIGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPSA-LSEQTEALIHRATSVSVQDDRIRVERMD- 243 (918)
T ss_dssp ---CEEEEEEEEETTTTEEEEEEEEECTTCHHHHHHHHHHCCSEEEEESS-CCHHHHHHHHHHHHSSCSSSCCEEEEEC-
T ss_pred cccCceEEEEEEEccCCeEEEEEecCchhHHHHHHHHHhcCCeEEEecCC-cchHHHHHHHhhhcccccccceeEEecc-
Confidence 11234799999999999999999999988999999999999999999985 4554444333211 0 111111222
Q ss_pred ccccChhhhHHHHHHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccch
Q 001077 543 SEFWDAETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDE 622 (1162)
Q Consensus 543 ~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~~~~ 622 (1162)
..+|+...+.+.+..+|..... ...+... +..+. .....+++|+|++|+||+.++++.
T Consensus 244 ~~~f~~~~a~~~l~~~f~~~~l---------------~~~g~~~----~~~~~---~~~~~~~~A~gall~Yl~~~~~~~ 301 (918)
T 3thx_B 244 NIYFEYSHAFQAVTEFYAKDTV---------------DIKGSQI----ISGIV---NLEKPVICSLAAIIKYLKEFNLEK 301 (918)
T ss_dssp GGGTSHHHHHHHHHHHCC---------------------------------CC---CCCHHHHHHHHHHHHHHHHTTCGG
T ss_pred ccccChhHHHHHHHHHhCcccc---------------ccccchh----hhhhh---cccHHHHHHHHHHHHHHHHhcccc
Confidence 3456766677777777653211 0011111 11111 123578999999999999988765
Q ss_pred hhccccceeecCCCCCccCCCCCeeecCHHHHHHccCccccCCCCCcccHHHHHhhhcChHHHHHHHHHhhCCCCCHHHH
Q 001077 623 TLLRFAKFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLI 702 (1162)
Q Consensus 623 ~ll~~~~f~~~~~~~~~~~~~~~~M~LD~~Tl~~LEI~~~~~~g~~~gSL~~lLn~~~T~~GkRlLr~wl~~PL~d~~~I 702 (1162)
.+....+|..+. ...+||.||++|++||||++|.++|+.+||||++||+|+|+||+||||+||++||+|++.|
T Consensus 302 ~l~~~~~~~~~~-------~~~~~m~LD~~T~rnLEL~~~~~~~~~~gSLl~~Ld~t~T~mG~RlLr~Wl~~PL~d~~~I 374 (918)
T 3thx_B 302 MLSKPENFKQLS-------SKMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREI 374 (918)
T ss_dssp GGSCGGGEEESC-------CTTTBCEECHHHHHHTTSSSCTTTCSSTTSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHH
T ss_pred cccccccceeec-------CCCCEEEECHHHHHhcCCcccCCCCCCCCcHHHHHhhCCChHHHHHHHHHHhCcCCCHHHH
Confidence 455555555441 2456999999999999999999888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHhCCCCcHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhH-HHHHH
Q 001077 703 RERQDAVAGLRGVNQPFALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCE-LMDQA 781 (1162)
Q Consensus 703 ~~R~daVe~l~~~~~~~~~~lr~~L~~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~-~~~~~ 781 (1162)
++|||+|++|...+...+..++..|+++|||||+++|++.+.. + .+++..+...|..+. .+...
T Consensus 375 ~~R~daVe~l~~~~~~~~~~l~~~L~~i~DleRll~ri~~~~~-~--------------~~dl~~l~~~l~~l~~~l~~~ 439 (918)
T 3thx_B 375 NARLDAVSEVLHSESSVFGQIENHLRKLPDIERGLCSIYHKKC-S--------------TQEFFLIVKTLYHLKSEFQAI 439 (918)
T ss_dssp HHHHHHHHHHHSCCCTHHHHHHHTTTTCCCHHHHHHHHHTTCC-C--------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHccCccHHHHHHHhccCcC-C--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999754556788899999999999999999975321 1 234444444444332 11111
Q ss_pred HHHHHHHHhhcchhhHHhhhcCCCCchhHHHHHHHHHhhcchhhh--cCCCceeeCCCCChhHHHHHHHHHHHHHHHHHH
Q 001077 782 CSSLGAILENTESRQLHHILTPGKGLPAIVSILKHFKDAFDWVEA--NNSGRIIPHGGVDMDYDSACKKVKEIEASLTKH 859 (1162)
Q Consensus 782 ~~~l~~~l~~~~s~~l~~l~~~~~~~~~l~~~l~~i~~~id~~~~--~~~g~i~~~~G~d~~lD~~~~~l~~i~~~L~~~ 859 (1162)
+..+.....+.+|..+.. .++.+...+..+.+.++.... ...+.++......++++..++.+++++.+++++
T Consensus 440 ---l~~~~~~~~~~lL~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 513 (918)
T 3thx_B 440 ---IPAVNSHIQSDLLRTVIL---EIPELLSPVEHYLKILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGVIDEIRMH 513 (918)
T ss_dssp ---HHHHHHTCCCHHHHHHHT---HHHHHTGGGHHHHTTSCHHHHHHTCSTTSCSCGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHhhhhccCHHHHHHHH---hhhhhHHHHHHHHHHHHHhhhhcCCccccccccccCHHHHHHHHHHHHHHHHHHHH
Confidence 111112234455555432 123332233445555543211 111223211122477888888999999999999
Q ss_pred HHHHHHHhCCCCceEEEeCCceEEEEccccccCCCCCcEEEeeeccceEEEeChHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001077 860 LKEQRKLLGDTSITYVTIGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQR 939 (1162)
Q Consensus 860 l~~~~~~l~~~~i~~~~~~~~~y~iev~~~~~~~vp~~~~~~ss~k~~~ry~tp~l~~l~~el~~~~~~~~~~~~~il~~ 939 (1162)
++++++.++..++.|+++.+.+|+|+|+.+..+++|++|+.++++++..||+||+++++++++..+++++...++.++.+
T Consensus 514 l~~~~~~i~~~~~~~~~~~g~~y~iev~~~~~~~vp~~~~~~~~~~~~~rf~tpel~~~~~~~~~~~e~~~~~e~~~~~~ 593 (918)
T 3thx_B 514 LQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRFHSPFIVENYRHLNQLREQLVLDCSAEWLD 593 (918)
T ss_dssp HHHHHHHHTCTTCCCEEETTEEEEEEEETTSGGGSCSSCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccceeEeecCCEEEEEEcHHHHhhCCCeEEEEEecCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888888899999988899999999988899999999999999999999999999999999999988888899999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeEcCCCCCCCCcEEEeeccCCccccccCCCCcccccce
Q 001077 940 LIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDI 1019 (1162)
Q Consensus 940 l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi 1019 (1162)
++..|.+++..|..+++++|+||||+|||.+|.. .+||||+|++ ...|.|+++|||+++......+.|||||+
T Consensus 594 l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~--~~~~~P~~~~-----~~~i~i~~~rHP~le~~~~~~~~~V~ndv 666 (918)
T 3thx_B 594 FLEKFSEHYHSLCKAVHHLATVDCIFSLAKVAKQ--GDYCRPTVQE-----ERKIVIKNGRHPVIDVLLGEQDQYVPNNT 666 (918)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTS--SSCBCCEEES-----SCEEEEEEECCHHHHHHTCSCSSSCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcCCcccC-----CCcEEEEeccchhhhhhhccCCceecccc
Confidence 9999999999999999999999999999999974 4799999985 34799999999999852111357999999
Q ss_pred ecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHH
Q 001077 1020 TIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETAL 1099 (1162)
Q Consensus 1020 ~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~ 1099 (1162)
.|+.. ..++++||||||||||||||++|++++|||+|+||||+.+.++++|+||+|+|+.|++..|.||||+||.+++.
T Consensus 667 sl~~~-~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~ 745 (918)
T 3thx_B 667 DLSED-SERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAE 745 (918)
T ss_dssp EECTT-SCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHH
T ss_pred cccCC-CCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHH
Confidence 99853 35799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHh-h-cccCceEEEehhhhccc
Q 001077 1100 MLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGF-Q-SLAGSQFLSTLFIKCNA 1152 (1162)
Q Consensus 1100 IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~-~-~l~~~~~~~th~~~~~~ 1152 (1162)
|++.+++++||||||+|+||++.+|.+|++++.+. . +...+++++||++.++.
T Consensus 746 il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 746 IIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp HHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH
Confidence 99999999999999999999999999999999874 3 35778999999987654
No 3
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=100.00 E-value=2.5e-123 Score=1170.02 Aligned_cols=718 Identities=26% Similarity=0.412 Sum_probs=590.7
Q ss_pred cCCCHHHHHHHHHHHhCCCeEEEEeeCceEEEecccHHHHhhhcceeeecC------CCCcCCcCcccHhHHHHHHHHcC
Q 001077 325 RNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG------EQPHCGFPERNFSMNVEKLARKG 398 (1162)
Q Consensus 325 ~~lTP~~~Qyw~iK~~~~D~VLfFkvGkFYElf~~DA~i~a~~L~L~~t~g------~~p~~GfPe~sl~~y~~kLV~~G 398 (1162)
+++||||||||+||++|||+|||||||||||||++||+++|++|+|++|++ ++||||||+|+++.|+++||++|
T Consensus 8 ~~~tp~~~qy~~ik~~~~d~~lffr~GdFYE~f~~DA~~~a~~l~i~lt~r~~~~~~~~pm~GvP~~~~~~yl~~Lv~~G 87 (800)
T 1wb9_A 8 DAHTPMMQQYLRLKAQHPEILLFYRMGDFYTLFYDDAKRASQLLDISLTKRGASAGEPIPMAGIPYHAVENYLAKLVNQG 87 (800)
T ss_dssp GGSCHHHHHHHHHHHHSTTSEEEEEETTEEEEEHHHHHHHHHHHTCCCEEECCSSSCCEEEEEEEGGGHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHhCCCEEEEEEcCCEEEEehhhHHHHHHHhCcEEeccccCCCCcCCccCCCHHHHHHHHHHHHHCC
Confidence 356999999999999999999999999999999999999999999999975 37999999999999999999999
Q ss_pred CeEEEEecCCChHHHHHHhhhcCCCCceeeeeEEEEeeCceeeeccccCCCCCCcEEEEEEecCCCCCCCCCCceEEEEE
Q 001077 399 YRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICV 478 (1162)
Q Consensus 399 yKVavvEQ~Et~~~~~~r~k~~g~k~~vv~Rev~~ViTpGTl~d~~~l~~~~~~~yllaI~e~~~~~~~~~~~~~~Gva~ 478 (1162)
||||||||+|+|+.. +++|+|+||+|+||||++|++++.. ..++||+||++.. ..||+||
T Consensus 88 ~kVai~eQ~e~~~~~----------k~~v~R~v~~v~TpGT~~~~~~l~~-~~~n~l~ai~~~~---------~~~Gla~ 147 (800)
T 1wb9_A 88 ESVAICEQIGDPATS----------KGPVERKVVRIVTPGTISDEALLQE-RQDNLLAAIWQDS---------KGFGYAT 147 (800)
T ss_dssp CCEEEEEECSCGGGC----------SSSCCEEEEEEECTTTCCCGGGSCT-TSCCCEEEEEECS---------SCEEEEE
T ss_pred CeEEEEEccCCcccc----------CCcceEEEEEEecCCcccccccccC-CCCcEEEEEEEcC---------CEEEEEE
Confidence 999999999999641 2699999999999999999988864 4689999999743 3699999
Q ss_pred EEcCCCeEEEEEEcCccchhHHHHHHHccCccEEEecCCCCChHHHHHHHhccCCCccccccCCccccChhhhHHHHHHH
Q 001077 479 VDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNI 558 (1162)
Q Consensus 479 vD~sTg~~~l~~f~Dd~~~s~L~t~L~~~~P~EIi~~~~~~s~~t~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~ 558 (1162)
+|++||+|++++|.| +++|.+.|.+++|+|||++.+..+.. +... ...+... + ..+|+...+.+.+..+
T Consensus 148 ~D~stg~~~~~~~~d---~~~l~~~l~~~~P~Eil~~~~~~~~~----l~~~--~~~~~~~-~-~~~f~~~~~~~~l~~~ 216 (800)
T 1wb9_A 148 LDISSGRFRLSEPAD---RETMAAELQRTNPAELLYAEDFAEMS----LIEG--RRGLRRR-P-LWEFEIDTARQQLNLQ 216 (800)
T ss_dssp ECTTTCCEEEECCCS---HHHHHHHHHHHCCSEEEEETTCCCGG----GTTT--CSSEEEE-C-GGGGCHHHHHHHHHHH
T ss_pred EECCCCEEEEEEecC---HHHHHHHHHhcCCeEEEEcCCCChHH----Hhhc--ccceEEc-c-ccccChhHHHHHHHHH
Confidence 999999999999987 78999999999999999997654321 1110 1112222 2 3556766666777777
Q ss_pred HhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhccccceeecCCCCC
Q 001077 559 YNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGF 638 (1162)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~~~~~ll~~~~f~~~~~~~~ 638 (1162)
|.... + ..+.. .+...+++|+|++|.||+.++... +.++..+
T Consensus 217 ~~~~~---l------------------------~~~~~--~~~~~~~~a~gall~Yl~~~~~~~-~~~~~~~-------- 258 (800)
T 1wb9_A 217 FGTRD---L------------------------VGFGV--ENAPRGLCAAGCLLQYAKDTQRTT-LPHIRSI-------- 258 (800)
T ss_dssp HTCSC---S------------------------GGGTC--TTCHHHHHHHHHHHHHHHHHHCSC-CTTCCCC--------
T ss_pred hCccc---h------------------------hhccc--cCcHHHHHHHHHHHHHHHHhhhhc-ccccccc--------
Confidence 64211 0 00000 123578999999999999987642 3333222
Q ss_pred ccCCCCCeeecCHHHHHHccCccccCCCCCcccHHHHHhhhcChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhcCCch
Q 001077 639 GDMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQP 718 (1162)
Q Consensus 639 ~~~~~~~~M~LD~~Tl~~LEI~~~~~~g~~~gSL~~lLn~~~T~~GkRlLr~wl~~PL~d~~~I~~R~daVe~l~~~~~~ 718 (1162)
..+...++|.||.+|++||||+++.+ |+.+||||+++|+|+|+||+|+||+||++||+|+++|++|||+|++|..
T Consensus 259 ~~~~~~~~m~ld~~t~~~LEl~~~~~-~~~~gSL~~ll~~t~T~~G~RlL~~wl~~Pl~d~~~I~~R~~~v~~~~~---- 333 (800)
T 1wb9_A 259 TMEREQDSIIMDAATRRNLEITQNLA-GGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQD---- 333 (800)
T ss_dssp EECCGGGBCEECHHHHHHTTSSSCTT-SCSTTSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHTGG----
T ss_pred EEEccCCEEEecHHHHHhccCcccCC-CCccccHHHHhCCCcCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHH----
Confidence 23345679999999999999999876 4558999999999999999999999999999999999999999999985
Q ss_pred hHHHHHHHhCCCCcHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHH
Q 001077 719 FALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLH 798 (1162)
Q Consensus 719 ~~~~lr~~L~~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~ 798 (1162)
+...++..|++++|+||+++|+..+. . ..+++..+..+|..+..+.+. +....++.|.
T Consensus 334 ~~~~l~~~L~~~~Dler~l~r~~~~~-~--------------~~~dl~~l~~~l~~~~~l~~~-------l~~~~~~~L~ 391 (800)
T 1wb9_A 334 FTAGLQPVLRQVGDLERILARLALRT-A--------------RPRDLARMRHAFQQLPELRAQ-------LETVDSAPVQ 391 (800)
T ss_dssp GHHHHHHHHHTTCSHHHHHHHHHHTC-C--------------CHHHHHHHHHHHTTHHHHHHH-------HHSCCCHHHH
T ss_pred HHHHHHHHhcCCccHHHHHHHHHcCC-C--------------CHHHHHHHHHHHHHHHHHHHH-------HHhcCcHHHH
Confidence 67789999999999999999996531 1 134566666777665554433 2223345555
Q ss_pred hhhcCCCCchhHHHHHHHHHhhcchhh--hcCCCceeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEE
Q 001077 799 HILTPGKGLPAIVSILKHFKDAFDWVE--ANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVT 876 (1162)
Q Consensus 799 ~l~~~~~~~~~l~~~l~~i~~~id~~~--~~~~g~i~~~~G~d~~lD~~~~~l~~i~~~L~~~l~~~~~~l~~~~i~~~~ 876 (1162)
.+... ++.+..+.+.|..+||.+. ...+|.++ ++|++++||++++.++++++.|.+++++.++.++.+.++...
T Consensus 392 ~l~~~---l~~~~~l~~~i~~~i~~~~~~~~~~~~~I-~~g~~~eLd~lr~~~~~~~~~l~~~~~~~~~~~~~~~l~i~~ 467 (800)
T 1wb9_A 392 ALREK---MGEFAELRDLLERAIIDTPPVLVRDGGVI-ASGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKVGF 467 (800)
T ss_dssp HHHHH---HCCCHHHHHHHHHHBCSSCCSCSTTCCCB-CTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCEEEE
T ss_pred HHHHh---cccHHHHHHHHHHHhCcCchhhhhcCCee-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEe
Confidence 54422 2344556666778887432 12334443 899999999999999999999999888888888888887777
Q ss_pred eCCceEEEEccccccCCCCCcEEEeeeccceEEEeChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001077 877 IGKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVA 956 (1162)
Q Consensus 877 ~~~~~y~iev~~~~~~~vp~~~~~~ss~k~~~ry~tp~l~~l~~el~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~ 956 (1162)
.+..||+|+|+.+..+++|.+|++.++.+|..||+||+++++++++.++++++..++.+++.+|...+.++.+.|..+++
T Consensus 468 ~~~~gy~i~V~~~~~~~vp~~~i~~~s~~~~~~f~tp~l~~l~~~i~~~~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~ 547 (800)
T 1wb9_A 468 NAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSAS 547 (800)
T ss_dssp ETTTEEEEEEEHHHHTTSCTTCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHH
T ss_pred cCcceEEEEEeccccccCCcceEEeeeccCCCEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77789999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccceeEcCCCCCCCCcEEEeeccCCccccccCCCCcccccceecCCCCCcceEEEEccC
Q 001077 957 ATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPN 1036 (1162)
Q Consensus 957 ~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi~l~~~~~~~~~IITGPN 1036 (1162)
++|+|||++|||.+|..+ +||||+|.+ .+.|.|++||||+++.. + .+.|||||+.|+ ...++++|||||
T Consensus 548 ~la~lD~l~s~A~~a~~~--~~~~P~~~~-----~~~i~i~~~rHP~le~~-~-~~~~vlndisl~--~~g~i~~ItGpN 616 (800)
T 1wb9_A 548 ALAELDVLVNLAERAYTL--NYTCPTFID-----KPGIRITEGRHPVVEQV-L-NEPFIANPLNLS--PQRRMLIITGPN 616 (800)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCBCCEECS-----SSCEEEEEECCTTHHHH-C-SSCCCCEEEEEC--SSSCEEEEECCT
T ss_pred HHHHHHHHHHHHHHHHhC--CCcccEECC-----CCCEEEEeccccEEEcc-C-CCceeeeccccc--CCCcEEEEECCC
Confidence 999999999999999865 799999974 35799999999999853 2 347999999998 346799999999
Q ss_pred CCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCCCCcEEEEcCCC
Q 001077 1037 MGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELG 1116 (1162)
Q Consensus 1037 MgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELG 1116 (1162)
|||||||||++|++++|||+|+||||+.+.++++|+||+|+|+.|++..|.|||+.||.+++.||+.+++++||||||+|
T Consensus 617 GsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDEp~ 696 (800)
T 1wb9_A 617 MGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIG 696 (800)
T ss_dssp TSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTTEEEEEESCC
T ss_pred CCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHHHhhCCHHHHHHhhhhhhhHHHHHHHHHHHhccCCCEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHH-hhc-ccCceEEEehhhhcccc
Q 001077 1117 RGTSTSDGQAIAVFSSG-FQS-LAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1117 RGTst~DG~AIA~A~~~-~~~-l~~~~~~~th~~~~~~~ 1153 (1162)
+||++.||.+|++++.+ +.+ ...+++++||++.+..+
T Consensus 697 ~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l 735 (800)
T 1wb9_A 697 RGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQL 735 (800)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGH
T ss_pred CCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHH
Confidence 99999999999998887 444 46789999999876654
No 4
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=100.00 E-value=7.9e-119 Score=1122.90 Aligned_cols=685 Identities=30% Similarity=0.426 Sum_probs=565.2
Q ss_pred cCCCHHHHHHHHHHHhCCCeEEEEeeCceEEEecccHHHHhhhcceeeecC-----CCCcCCcCcccHhHHHHHHHHcCC
Q 001077 325 RNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQYMKG-----EQPHCGFPERNFSMNVEKLARKGY 399 (1162)
Q Consensus 325 ~~lTP~~~Qyw~iK~~~~D~VLfFkvGkFYElf~~DA~i~a~~L~L~~t~g-----~~p~~GfPe~sl~~y~~kLV~~Gy 399 (1162)
.++||||||||+||++|||+|||||||||||||++||+++|++|||++|++ ++||||||+|+++.|+++||++||
T Consensus 11 ~~~tp~~~qy~~iK~~~~d~~l~~r~GdFYE~f~~DA~~~~~~L~i~lt~r~~~~~~~pm~GvP~~~~~~y~~~Lv~~G~ 90 (765)
T 1ewq_A 11 GPLPPLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPMAGIPLRAFEAYAERLLKMGF 90 (765)
T ss_dssp SCCCHHHHHHHHHHHHCTTSEEEEEETTEEEEEHHHHHHHHHHHTCCCEEEECSSCEEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEecCceeEEcHHHHHHHHHHhCcEEeccCCCCCCCceecCcHHHHHHHHHHHHHCCC
Confidence 378999999999999999999999999999999999999999999999975 479999999999999999999999
Q ss_pred eEEEEecCCChHHHHHHhhhcCCCCceeeeeEEEEeeCceeeeccccCCCCCCcEEEEEEecCCCCCCCCCCceEEEEEE
Q 001077 400 RVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEGELLSANPDASYLMALTESNQSPASQSTDRCFGICVV 479 (1162)
Q Consensus 400 KVavvEQ~Et~~~~~~r~k~~g~k~~vv~Rev~~ViTpGTl~d~~~l~~~~~~~yllaI~e~~~~~~~~~~~~~~Gva~v 479 (1162)
|||||||+|+|+.. .++|+|+||+|+||||++|++++ ...+|||+||+ . ...||+||+
T Consensus 91 kVai~eQ~e~~~~~----------kg~v~R~v~~v~TpGT~~~~~~l--~~~~n~l~ai~-~---------~~~~Gla~~ 148 (765)
T 1ewq_A 91 RLAVADQVEPAEEA----------EGLVRREVTQLLTPGTLLQESLL--PREANYLAAIA-T---------GDGWGLAFL 148 (765)
T ss_dssp CEEEEEECSCGGGC----------SSSCCEEEEEEECGGGCCCGGGS--CSSCCCEEEEE-E---------SSSEEEEEE
T ss_pred EEEEEecCCCcccc----------cCceeEEEEEEEcCceecchhhc--CCCCcEEEEEE-e---------CCEEEEEEE
Confidence 99999999999641 25999999999999999999988 34789999998 2 135999999
Q ss_pred EcCCCeEEEEEEcCccchhHHHHHHHccCccEEEecCCCCChHHHHHHHhccCCCccccccCCccccChhhhHHHHHHHH
Q 001077 480 DVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERAILRHTRNPLVNDLVPLSEFWDAETTVLEIKNIY 559 (1162)
Q Consensus 480 D~sTg~~~l~~f~Dd~~~s~L~t~L~~~~P~EIi~~~~~~s~~t~~~l~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~ 559 (1162)
|++||+|++++|.|+ ++|.+.|.+++|+|||++... .. +.. .+..+...|
T Consensus 149 D~stg~~~~~~~~d~---~~l~~~l~~~~P~Eil~~~~~-----~~-~~~---------------------~~~~~~~~f 198 (765)
T 1ewq_A 149 DVSTGEFKGTVLKSK---SALYDELFRHRPAEVLLAPEL-----LE-NGA---------------------FLDEFRKRF 198 (765)
T ss_dssp ETTTTEEEEEEESSH---HHHHHHHHHHCCSEEEECHHH-----HH-CHH---------------------HHHHHHHHC
T ss_pred ECCCCEEEEEEecCH---HHHHHHHHhcCCeEEEecCCh-----HH-HHH---------------------Hhhhccccc
Confidence 999999999999875 689999999999999997431 00 000 001111111
Q ss_pred hhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhccccceeecCCCCCc
Q 001077 560 NRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFAKFELLPCSGFG 639 (1162)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~~~~~ll~~~~f~~~~~~~~~ 639 (1162)
.. ..+ . ..++.. . ..+ ..+++|+|++|.||+.++... +. +..+.
T Consensus 199 ~~---~~l-------~----~~~~~~-------~----~~~-~~~~~a~g~ll~Yl~~~~~~~-~~-~~~~~-------- 242 (765)
T 1ewq_A 199 PV---MLS-------E----APFEPE-------G----EGP-LALRRARGALLAYAQRTQGGA-LS-LQPFR-------- 242 (765)
T ss_dssp CS---EEE-------C----CCCCCC-------S----SSC-HHHHHHHHHHHHHHHHHHTSC-CC-CCCCE--------
T ss_pred CH---HHH-------H----HHhccc-------c----cCC-HHHHHHHHHHHHHHHHhhhcc-cc-cCCcE--------
Confidence 11 000 0 000000 0 012 578999999999999887542 22 33332
Q ss_pred cCCCCCeeecCHHHHHHccCccccCCCCCcccHHHHHhhhcChHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhcCCchh
Q 001077 640 DMAKKPYMVLDAPALENLEVFENSRSGDSSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQDAVAGLRGVNQPF 719 (1162)
Q Consensus 640 ~~~~~~~M~LD~~Tl~~LEI~~~~~~g~~~gSL~~lLn~~~T~~GkRlLr~wl~~PL~d~~~I~~R~daVe~l~~~~~~~ 719 (1162)
.+...+||.||.+|++||||++|.+ | +||||++||+|+|+||+|+||+||++||+|.++|++|||+|++|.. +...
T Consensus 243 ~~~~~~~m~lD~~t~~~LEl~~~~~-~--~gsL~~~ld~t~T~~G~RlL~~wl~~Pl~d~~~I~~R~~~V~~l~~-~~~~ 318 (765)
T 1ewq_A 243 FYDPGAFMRLPEATLRALEVFEPLR-G--QDTLFSVLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVR-EGAL 318 (765)
T ss_dssp ECCGGGSCBCCHHHHHHTTSSSCSS-S--CCCHHHHHCCCSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHH-CHHH
T ss_pred EECCCCeEEecHHHHHhCcCccCCC-c--cchHHHHhCCCCCHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHHHh-CHHH
Confidence 3345679999999999999999875 4 7999999999999999999999999999999999999999999986 5567
Q ss_pred HHHHHHHhCCCCcHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcchhhHHh
Q 001077 720 ALEFRKALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLGAILENTESRQLHH 799 (1162)
Q Consensus 720 ~~~lr~~L~~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~~~l~~~~s~~l~~ 799 (1162)
+..++..|++++|+||++.|+..+. . ..+++..+..+|..+..+... +.
T Consensus 319 ~~~l~~~L~~~~Dler~l~r~~~~~-~--------------~~~dl~~l~~~l~~~~~l~~~-------l~--------- 367 (765)
T 1ewq_A 319 REGVRRLLYRLADLERLATRLELGR-A--------------SPKDLGALRRSLQILPELRAL-------LG--------- 367 (765)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHTTC-C--------------CHHHHHHHHHHHHHHHHHHHH-------HC---------
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcCC-C--------------CHHHHHHHHHHHHHHHHHHHH-------HH---------
Confidence 7889999999999999999996431 1 123455555555443332221 11
Q ss_pred hhcCCCCchhHHHHHHHHHhhcchhh--hcCCCceeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEe
Q 001077 800 ILTPGKGLPAIVSILKHFKDAFDWVE--ANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQRKLLGDTSITYVTI 877 (1162)
Q Consensus 800 l~~~~~~~~~l~~~l~~i~~~id~~~--~~~~g~i~~~~G~d~~lD~~~~~l~~i~~~L~~~l~~~~~~l~~~~i~~~~~ 877 (1162)
+ ...++.+..+.+.|..+|+.+. ...+|.++ ++|++++||.+++.++++++.|.++.+++++.++.+.++....
T Consensus 368 l---~~~l~~~~~l~~~i~~~i~~~~~~~~~~~~~i-~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~l~i~~~ 443 (765)
T 1ewq_A 368 E---EVGLPDLSPLKEELEAALVEDPPLKVSEGGLI-REGYDPDLDALRAAHREGVAYFLELEERERERTGIPTLKVGYN 443 (765)
T ss_dssp T---TSCCCCCHHHHHHHHHHBCSSCCSCTTSSCCB-CTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred H---HhccccHHHHHHHHHHHhcccchhhhccCCcc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEec
Confidence 1 1123445556666777886431 11234443 8999999999999999999999998888888888777777666
Q ss_pred CCceEEEEccccccCCCCCcEEEeeeccceEEEeChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001077 878 GKDLYLLEVPESLRGSVPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQRLIGQFCEHHNKWRQMVAA 957 (1162)
Q Consensus 878 ~~~~y~iev~~~~~~~vp~~~~~~ss~k~~~ry~tp~l~~l~~el~~~~~~~~~~~~~il~~l~~~~~~~~~~l~~~~~~ 957 (1162)
+..+|+|+|+....+++|++|+..++.++..||+||+++++++++.++++++..++.+++.+|.+.+.++...|..+.++
T Consensus 444 ~~~gy~i~v~~~~~~~vp~~~i~~~s~~~~~rf~tp~l~el~~~i~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~ 523 (765)
T 1ewq_A 444 AVFGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLPEMKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARI 523 (765)
T ss_dssp TTTEEEEEEEGGGGGGSCTTCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred cceeEEEEeehHhhhcCCcceEEEEeccCCcEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCccceeEcCCCCCCCCcEEEeeccCCccccccCCCCcccccceecCCCCCcceEEEEccCC
Q 001077 958 TAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNM 1037 (1162)
Q Consensus 958 la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi~l~~~~~~~~~IITGPNM 1037 (1162)
+++|||++|+|.+|... +||||+| + +.|.|+++|||+++. .+.|||||+.|+ .++++||||||
T Consensus 524 la~LD~l~s~a~~a~~~--~~~~P~~-~------~~i~i~~~rHP~le~----~~~~vl~disl~----g~i~~I~GpNG 586 (765)
T 1ewq_A 524 LAELDVYAALAEVAVRY--GYVRPRF-G------DRLQIRAGRHPVVER----RTEFVPNDLEMA----HELVLITGPNM 586 (765)
T ss_dssp HHHHHHHHHHHHHHHHH--TCBCCEE-S------SSEEEEEECCTTGGG----TSCCCCEEEEES----SCEEEEESCSS
T ss_pred HHHHHHHHhhHHHHHhC--Cceeecc-C------CcEEEEEeECceEcc----CCceEeeeccCC----CcEEEEECCCC
Confidence 99999999999999865 6999999 2 359999999999984 247999999997 36899999999
Q ss_pred CChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCC
Q 001077 1038 GGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRNSLVVLDELGR 1117 (1162)
Q Consensus 1038 gGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGR 1117 (1162)
||||||||++|.+++|||+|+||||..+.++++|+||+++|..|++..|.||||.||.+++.||+.+++++||||||+||
T Consensus 587 sGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~~~~~~~d~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgr 666 (765)
T 1ewq_A 587 AGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGR 666 (765)
T ss_dssp SSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTT
T ss_pred CChHHHHHHHHhhhhhcccCceeehhccceeeHHHhhccCCHHHHHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHH-hhcccCceEEEehhhhcccc
Q 001077 1118 GTSTSDGQAIAVFSSG-FQSLAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1118 GTst~DG~AIA~A~~~-~~~l~~~~~~~th~~~~~~~ 1153 (1162)
||++.||.++++++.+ +.+...+++++||++.+..+
T Consensus 667 GTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~~ 703 (765)
T 1ewq_A 667 GTSSLDGVAIATAVAEALHERRAYTLFATHYFELTAL 703 (765)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTC
T ss_pred CCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 9999999999998887 55556789999999876544
No 5
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=100.00 E-value=3.3e-114 Score=1097.67 Aligned_cols=752 Identities=24% Similarity=0.328 Sum_probs=576.4
Q ss_pred cCCCHHHHHHHHHHHhCCCeEEEEeeCceEEEecccHHHHhhhccee-----eecC----CCCcCCcCcccHhHHHHH-H
Q 001077 325 RNLSEGQKQWWEFKSKHMDKVIFFKMGKFYELFEMDAHVGAKELDLQ-----YMKG----EQPHCGFPERNFSMNVEK-L 394 (1162)
Q Consensus 325 ~~lTP~~~Qyw~iK~~~~D~VLfFkvGkFYElf~~DA~i~a~~L~L~-----~t~g----~~p~~GfPe~sl~~y~~k-L 394 (1162)
.+.||||+|||++|++|+|+|+||++|+|||+|++||+.+|++|+++ ++++ ++|+|+||.++|+.|+++ |
T Consensus 14 ~~~~~f~~~y~~Lk~k~~dtv~~F~~GdfYe~~~~DA~~vA~~l~~t~~~~k~~~~~~~~~~~~v~i~~~~~~~~l~~~L 93 (934)
T 3thx_A 14 AAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVLSKMNFESFVKDLL 93 (934)
T ss_dssp HHHHHHHHHHHTSCCCCTTEEEEEECSSEEEEETHHHHHHHHHTTSSSTTCEEESSSSCCCEEEEEEEHHHHHHHHHHHH
T ss_pred ccccHHHHHHHhccccCCCeEEEEEcCCeeeeehhhHHHHHHHHhhhhhhhhccCCCCCCCCCeeeeCHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999874 4333 468999999999999997 9
Q ss_pred HHcCCeEEEEecCCChHHHHHHhhhcCCCCceeeeeEEEEeeCceeeec-cccCCCCC---CcEEEEEEecCCCCCCCCC
Q 001077 395 ARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVVTKGTLTEG-ELLSANPD---ASYLMALTESNQSPASQST 470 (1162)
Q Consensus 395 V~~GyKVavvEQ~Et~~~~~~r~k~~g~k~~vv~Rev~~ViTpGTl~d~-~~l~~~~~---~~yllaI~e~~~~~~~~~~ 470 (1162)
+++||||+||||.+++. .+++++|+|++++||||+++. ++|..+.+ ++||+||++... +.
T Consensus 94 l~~g~rVei~~q~~~~~-----------~~~~~~r~l~~~~TPGnl~~~ed~L~~~~d~~~~~~l~AIk~~~~-----~~ 157 (934)
T 3thx_A 94 LVRQYRVEVYKNRAGNK-----------ASKENDWYLAYKASPGNLSQFEDILFGNNDMSASIGVVGVKMSAV-----DG 157 (934)
T ss_dssp HTTCCEEEEEEECC---------------CCCCCEEEEEEEBTTBCTTCHHHHC--------CCEEEEEECCS-----SS
T ss_pred HHcCCEEEEEecCCccc-----------ccCccceEEEEEECCCcHHHHHHHhhccccccccceEEEEEEeec-----CC
Confidence 99999999999977642 124689999999999999985 34432222 689999998532 23
Q ss_pred CceEEEEEEEcCCCeEEEEEEcCccchhHHHHHHHccCccEEEecCCCCChHHHHH--HHhccCCCccccccCCccccCh
Q 001077 471 DRCFGICVVDVATSRIILGQVMDDLDCSVLCCLLSELRPVEIIKPANMLSPETERA--ILRHTRNPLVNDLVPLSEFWDA 548 (1162)
Q Consensus 471 ~~~~Gva~vD~sTg~~~l~~f~Dd~~~s~L~t~L~~~~P~EIi~~~~~~s~~t~~~--l~~~~~~~~~~~~~~~~~f~~~ 548 (1162)
...||+||+|++||+|++++|.|+..+++|.+.|.+++|+|||++....+.+..++ +.... ...+. ..+. .+|+.
T Consensus 158 ~~~~Gla~~D~stge~~~~~~~d~~~~~~l~~~l~~~~P~Eil~~~~~~~~~~~~l~~~~~~~-~~~~~-~~~~-~~f~~ 234 (934)
T 3thx_A 158 QRQVGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQIIQRG-GILIT-ERKK-ADFST 234 (934)
T ss_dssp SCEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHCCSEEEEESSCCCHHHHHHHHHHHHH-TCEEE-EECG-GGGCC
T ss_pred CcEEEEEEEECCCCeEEEEecCCchHHHHHHHHHHhCCCeEEEeeCCCCcccHHHHHHHHhhc-CceEE-ecch-hhcCH
Confidence 56899999999999999999999988999999999999999999987665433221 11111 11122 2232 34455
Q ss_pred hhhHHHHHHHHhhcccccccccccccccccccCCCCcccchhhhhhhccCCChhHHHHHHHHHHHHHHHhccchhhcccc
Q 001077 549 ETTVLEIKNIYNRITAESLNKADSNVANSQAEGDGLTCLPGILSELISTGDSGSQVLSALGGTLFYLKKSFLDETLLRFA 628 (1162)
Q Consensus 549 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~l~~~~~~~~~al~Algall~YL~~~~~~~~ll~~~ 628 (1162)
..+.+.+.+++....... .....++.. +.+++++|+|++|.||+.++... .....
T Consensus 235 ~~~~~~l~~~~~~~~~~~---------------~~~~~~~~~---------~~~~~~~a~gall~Yl~~~~~~~-~~~~~ 289 (934)
T 3thx_A 235 KDIYQDLNRLLKGKKGEQ---------------MNSAVLPEM---------ENQVAVSSLSAVIKFLELLSDDS-NFGQF 289 (934)
T ss_dssp SSHHHHHHHHBCCCTTSC---------------CCGGGCGGG---------GCHHHHHHHHHHHHHHTGGGCGG-GTTCB
T ss_pred HHHHHHHHHHhccccccc---------------ccccccccc---------ccHHHHHHHHHHHHHHHHhcCcc-ccccc
Confidence 556666666554221100 001122211 23689999999999999876432 22211
Q ss_pred ceeecCCCCCccCCCCCeeecCHHHHHHccCccccCCCC-CcccHHHHHhhhcChHHHHHHHHHhhCCCCCHHHHHHHHH
Q 001077 629 KFELLPCSGFGDMAKKPYMVLDAPALENLEVFENSRSGD-SSGTLYAQLNHCVTAFGKRLLRTWLARPLYNSGLIRERQD 707 (1162)
Q Consensus 629 ~f~~~~~~~~~~~~~~~~M~LD~~Tl~~LEI~~~~~~g~-~~gSL~~lLn~~~T~~GkRlLr~wl~~PL~d~~~I~~R~d 707 (1162)
.+ ..+...+||.||++|++||||++|.++++ .+||||++||+|+|+||+||||+||++||+|++.|++|||
T Consensus 290 ~~--------~~~~~~~~m~lD~~t~~nLEl~~~~~~~~~~~~SL~~~ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~R~d 361 (934)
T 3thx_A 290 EL--------TTFDFSQYMKLDIAAVRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLN 361 (934)
T ss_dssp EE--------EECCGGGBCEECHHHHHHTTSCC---------CCHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHH
T ss_pred cc--------eEEcCCCeEEeCHHHHhhccccccCCCCCCCCCcHHHHhccCCCHHHHHHHHHHHhCcCCCHHHHHHHHH
Confidence 11 12345679999999999999999987644 3689999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchhHHHHHH-HhCCCCcHHHHHHHHhccccccCCCCccchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001077 708 AVAGLRGVNQPFALEFRK-ALSRLPDMERLLARLFASSEANGRNSNKVVLYEDAAKKQLQEFISALHGCELMDQACSSLG 786 (1162)
Q Consensus 708 aVe~l~~~~~~~~~~lr~-~L~~lpDleRll~ri~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~l~ 786 (1162)
+|++|.+ +..++..++. .|+++||+||+++|+..+. . ..+++..+..+|..+..+.+.+...
T Consensus 362 ~Ve~l~~-~~~~~~~l~~~~L~~i~DleRl~~ri~~~~-~--------------~~~dl~~l~~~l~~~~~l~~~l~~~- 424 (934)
T 3thx_A 362 LVEAFVE-DAELRQTLQEDLLRRFPDLNRLAKKFQRQA-A--------------NLQDCYRLYQGINQLPNVIQALEKH- 424 (934)
T ss_dssp HHHHHHS-CHHHHHHHHTTTGGGCCCHHHHHHHHHTTC-C--------------CHHHHHHHHHHHTTHHHHHHHHHHT-
T ss_pred HHHHHhh-ChHHHHHHHHHHhcCCCCHHHHHHHHhcCC-C--------------CHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 9999996 5677788997 6999999999999996532 1 1235555666665554443332111
Q ss_pred HHHhhcchhhHHhh-hc-CCCCchhHHHHHHHHHhhcchhhhcCCCceeeCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 001077 787 AILENTESRQLHHI-LT-PGKGLPAIVSILKHFKDAFDWVEANNSGRIIPHGGVDMDYDSACKKVKEIEASLTKHLKEQR 864 (1162)
Q Consensus 787 ~~l~~~~s~~l~~l-~~-~~~~~~~l~~~l~~i~~~id~~~~~~~g~i~~~~G~d~~lD~~~~~l~~i~~~L~~~l~~~~ 864 (1162)
....+..+..+ +. ....+..+..+.+.|..+||.... ++|..++++|++++||++++.++++++.|.+++++++
T Consensus 425 ---~~~~~~~l~~~~~~~l~~~~~~l~~~~~~i~~~i~~~~~-~~g~~~i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~ 500 (934)
T 3thx_A 425 ---EGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTLDMDQV-ENHEFLVKPSFDPNLSELREIMNDLEKKMQSTLISAA 500 (934)
T ss_dssp ---CCSSSTTGGGGTHHHHHHHHHHHHHHHHHHHTTBCTTGG-GTTCCCBCTTSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccccchHHHHHHHHHHHHHHhhHHHHHHHHHHHhCcchh-hcCCceeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001222211 00 001123455666777888876543 4565667999999999999999999999999999888
Q ss_pred HHhCC---CCceEEEeCCceEEEEccccccCC--CCCcEEEeeeccceEEEeChHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001077 865 KLLGD---TSITYVTIGKDLYLLEVPESLRGS--VPRDYELRSSKKGFFRYWTPNIKKLLGELSQAESEKESALKSILQR 939 (1162)
Q Consensus 865 ~~l~~---~~i~~~~~~~~~y~iev~~~~~~~--vp~~~~~~ss~k~~~ry~tp~l~~l~~el~~~~~~~~~~~~~il~~ 939 (1162)
+.++. .++++......||+|+|+...... .|.+|++.+++++..||+|++++++++++.++++++...+.+++.+
T Consensus 501 ~~~~~~~~~~lk~~~~~~~Gy~i~v~~~~~~~~~~~~~~~~~~t~~~~~rf~t~el~~l~~~~~~~~~~~~~~e~~i~~~ 580 (934)
T 3thx_A 501 RDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKE 580 (934)
T ss_dssp HHSCCCBTTTBEEEECC--CEEEEECHHHHTTTTTCSSCEEEEEC--CEEEECTTHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHhCCCccceEEEEEeccceEEEEEEechhhccCCCCCcEEEEcccCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87765 456766666789999998654333 3678999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeEcCCCCCCCCcEEEeeccCCccccccCCCCcccccce
Q 001077 940 LIGQFCEHHNKWRQMVAATAELDALISLAIASDFYEGPTCRPVILDSCSNEEPYISAKSLGHPVLRSDSLGKGEFVPNDI 1019 (1162)
Q Consensus 940 l~~~~~~~~~~l~~~~~~la~LD~L~SlA~~a~~~~~~~~rP~~~~~~~~~~~~l~i~~~RHP~le~~~~~~~~fVPNDi 1019 (1162)
|...+.++...|..+++++|+||||+|||.+|.....+||||+|.+. +...|.|+++|||+++.. ..+.|||||+
T Consensus 581 l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~rP~~~~~---~~~~i~i~~~rHP~le~~--~~~~~v~ndi 655 (934)
T 3thx_A 581 IVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAILEK---GQGRIILKASRHACVEVQ--DEIAFIPNDV 655 (934)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCBCCEEECT---TSCEEEEEEECCTTTTTC----CCCCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCeeccC---CCcceEeecCccchhhhc--CCceeecccc
Confidence 99999999999999999999999999999999865568999999852 145799999999999853 2357999999
Q ss_pred ecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHH
Q 001077 1020 TIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETAL 1099 (1162)
Q Consensus 1020 ~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~ 1099 (1162)
.|+.. .+++++||||||||||||||++|++++|||+||||||+.+.++++|+||+|+|+.|++..|.||||+||.+++.
T Consensus 656 sl~~~-~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~ 734 (934)
T 3thx_A 656 YFEKD-KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETAS 734 (934)
T ss_dssp EEETT-TBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHH
T ss_pred eeecC-CCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHH
Confidence 99853 35799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhh-c-ccCceEEEehhhhcccccc
Q 001077 1100 MLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQ-S-LAGSQFLSTLFIKCNAVDC 1155 (1162)
Q Consensus 1100 IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~-~-l~~~~~~~th~~~~~~~~~ 1155 (1162)
||+.++++|||||||+|+||++.||.+|||++.+.. + ...+++++||++.+..+.+
T Consensus 735 il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad 792 (934)
T 3thx_A 735 ILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALAN 792 (934)
T ss_dssp HHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGG
T ss_pred HHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhc
Confidence 999999999999999999999999999999998843 3 4778999999998776644
No 6
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.25 E-value=1.8e-06 Score=89.77 Aligned_cols=115 Identities=13% Similarity=0.078 Sum_probs=61.1
Q ss_pred eEEEEccCCCChhHHHHHHHHHHHHHHcCCccc-----CCccccC-------CcceeeeecCCccc--hhh---cccchH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADVP-----AEIFEIS-------PVDRIFVRMGAKDH--IMA---GQSTFL 1091 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~fVP-----A~~a~l~-------i~DrIfTRIGa~D~--i~~---g~STFm 1091 (1162)
.++|+|||++||||+||.++=..-.--.|.+.. .....++ ..+.++.+++...+ +.+ ..|.++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~ 81 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHHH
Confidence 478999999999999999885441111121110 0001111 12455555543211 111 234444
Q ss_pred HHHHHHHHH-----HhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEeh
Q 001077 1092 TELSETALM-----LSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTL 1146 (1162)
Q Consensus 1092 vEM~Eta~I-----L~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th 1146 (1162)
.-...++.. | +....|+||||+| -|+-.|-.....-.-.+.+...+++++||
T Consensus 82 ~qr~~la~aa~~~~l--~~~p~llilDEig-p~~~ld~~~~~~l~~~l~~~~~~~i~~~H 138 (178)
T 1ye8_A 82 ELAIPILERAYREAK--KDRRKVIIIDEIG-KMELFSKKFRDLVRQIMHDPNVNVVATIP 138 (178)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCEEEECCCS-TTGGGCHHHHHHHHHHHTCTTSEEEEECC
T ss_pred HHHHHHHhhcccccc--ccCCCEEEEeCCC-CcccCCHHHHHHHHHHHhcCCCeEEEEEc
Confidence 444444442 2 4567899999999 56656644433322224444444888997
No 7
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.92 E-value=2.8e-05 Score=85.48 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=38.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+....|+||||--.|-++.--..|...+.++.+...+++++||....
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~ 208 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLE 208 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred HcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence 67889999999999999888777777776665556789999998754
No 8
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.90 E-value=1.5e-05 Score=85.23 Aligned_cols=48 Identities=10% Similarity=-0.026 Sum_probs=39.0
Q ss_pred cCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1103 SATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1103 ~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
-+....++||||--.|-++.--..|...+.++.+...+++++||-...
T Consensus 148 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~ 195 (214)
T 1sgw_A 148 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS 195 (214)
T ss_dssp TTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 367889999999999999888888877776665446789999998754
No 9
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.87 E-value=4.9e-05 Score=82.44 Aligned_cols=52 Identities=12% Similarity=0.111 Sum_probs=41.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhcccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKCNAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~~~~~~ 1155 (1162)
+....++|+||--.|=++..-..|.-.+.++.+ ...+++++||.+....+.+
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d 213 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGE 213 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSS
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCC
Confidence 567889999999999998888887777766654 3678999999997655443
No 10
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.85 E-value=1.1e-05 Score=83.40 Aligned_cols=105 Identities=19% Similarity=0.181 Sum_probs=54.8
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCCC
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATR 1106 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT~ 1106 (1162)
.+.++|+||||+||||+++.++-... .+-|.-| +| +...+-+..-..+|.... ...++.....
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~-~~~g~~~------------~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 100 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY-EKKGIRG------------YF--FDTKDLIFRLKHLMDEGK--DTKFLKTVLN 100 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH-HHSCCCC------------CE--EEHHHHHHHHHHHHHHTC--CSHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH-HHcCCeE------------EE--EEHHHHHHHHHHHhcCch--HHHHHHHhcC
Confidence 35799999999999999999875443 2334211 01 111111100000000000 0012222336
Q ss_pred CcEEEEcCCCC-CCChhhHHHHHHHHHHhhcccCceEEEehhh
Q 001077 1107 NSLVVLDELGR-GTSTSDGQAIAVFSSGFQSLAGSQFLSTLFI 1148 (1162)
Q Consensus 1107 ~SLVIlDELGR-GTst~DG~AIA~A~~~~~~l~~~~~~~th~~ 1148 (1162)
..|+||||+|. |-+...-..+...+.........++++||+.
T Consensus 101 ~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 101 SPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp CSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 68999999995 5554443333332333333456788888876
No 11
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.84 E-value=2e-05 Score=86.90 Aligned_cols=48 Identities=8% Similarity=0.009 Sum_probs=37.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~ 1151 (1162)
+....|+||||--.|=++.--..|.-.+.++.+...+++++||-+...
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~ 222 (263)
T 2olj_A 175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFA 222 (263)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH
Confidence 567889999999999888777777666666654467899999987543
No 12
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.82 E-value=3.1e-05 Score=85.03 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=37.0
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcc-cCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSL-AGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l-~~~~~~~th~~~~ 1150 (1162)
+....|+||||--.|-++.--..|...+.++.+- ..+++++||....
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~ 191 (253)
T 2nq2_C 144 ASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ 191 (253)
T ss_dssp HTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 4678899999999998887777777666666543 6689999998754
No 13
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.77 E-value=3.4e-05 Score=83.04 Aligned_cols=52 Identities=12% Similarity=0.010 Sum_probs=39.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~ 1155 (1162)
+....|+||||--.|=++.--..|.-.+.++.+...+++++||-.....+.+
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d 207 (224)
T 2pcj_A 156 ANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTH 207 (224)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSS
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCC
Confidence 5778899999999998887766666666666544678999999886544444
No 14
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.76 E-value=5.9e-05 Score=82.41 Aligned_cols=49 Identities=6% Similarity=0.026 Sum_probs=38.8
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~ 1153 (1162)
+....|+||||--.|-++.--..|...+.++.+ ..+++++||-......
T Consensus 161 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-g~tviivtH~~~~~~~ 209 (247)
T 2ff7_A 161 VNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLSTVKN 209 (247)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGGGGTT
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHh
Confidence 567889999999999988877777776766643 6689999998865544
No 15
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.75 E-value=1.4e-05 Score=88.29 Aligned_cols=136 Identities=17% Similarity=0.082 Sum_probs=80.7
Q ss_pred cccceecCCCCCcceEEEEccCCCChhHHHHHHHHHH--------------------HHHHcCCcccCCcc---ccCCcc
Q 001077 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV--------------------ILAQVGADVPAEIF---EISPVD 1071 (1162)
Q Consensus 1015 VPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLiv--------------------ILAQiG~fVPA~~a---~l~i~D 1071 (1162)
+=+|+.+.-. ...++.|.|||++||||+||.++-+. -+++.-.|||-... .+++.+
T Consensus 26 vL~~vsl~i~-~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 104 (266)
T 4g1u_C 26 LINDVSLHIA-SGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSE 104 (266)
T ss_dssp EEEEEEEEEE-TTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHH
T ss_pred EEEeeEEEEc-CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHH
Confidence 3345555321 24689999999999999999987321 12222234443221 122222
Q ss_pred e-------------------eeeecCCcc---chhhcccchHHHHHHHHHHHhc----CCCCcEEEEcCCCCCCChhhHH
Q 001077 1072 R-------------------IFVRMGAKD---HIMAGQSTFLTELSETALMLSS----ATRNSLVVLDELGRGTSTSDGQ 1125 (1162)
Q Consensus 1072 r-------------------IfTRIGa~D---~i~~g~STFmvEM~Eta~IL~~----AT~~SLVIlDELGRGTst~DG~ 1125 (1162)
. ++.++|-.+ ......|-=+.-...+|..|-+ .....|+||||--.|=++.--.
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~ 184 (266)
T 4g1u_C 105 VIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQ 184 (266)
T ss_dssp HHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHH
T ss_pred HHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHH
Confidence 2 222223222 1122234444444456666654 1277899999999999988888
Q ss_pred HHHHHHHHhhccc-CceEEEehhhhcc
Q 001077 1126 AIAVFSSGFQSLA-GSQFLSTLFIKCN 1151 (1162)
Q Consensus 1126 AIA~A~~~~~~l~-~~~~~~th~~~~~ 1151 (1162)
.|.-.+..+.+.. .+++++||-+...
T Consensus 185 ~i~~~l~~l~~~~~~tvi~vtHdl~~~ 211 (266)
T 4g1u_C 185 HTLRLLRQLTRQEPLAVCCVLHDLNLA 211 (266)
T ss_dssp HHHHHHHHHHHHSSEEEEEECSCHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEEcCHHHH
Confidence 7777666665543 4899999998554
No 16
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.74 E-value=4.9e-05 Score=82.72 Aligned_cols=46 Identities=13% Similarity=-0.034 Sum_probs=36.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~ 1149 (1162)
+....++||||--.|-++.--..|...+.++.+ ...+++++||.+.
T Consensus 142 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~ 188 (240)
T 2onk_A 142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188 (240)
T ss_dssp TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 577889999999999988777777666666643 3678999999875
No 17
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.73 E-value=4.1e-05 Score=83.80 Aligned_cols=64 Identities=16% Similarity=0.070 Sum_probs=42.3
Q ss_pred ccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhccc
Q 001077 1087 QSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNA 1152 (1162)
Q Consensus 1087 ~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~ 1152 (1162)
.|.=+.-...+|..| +....|+||||--.|=++.--..|.-.+.++.+...+++++||-.....
T Consensus 144 LSgGqkQrv~iAraL--~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~ 207 (250)
T 2d2e_A 144 FSGGEKKRNEILQLL--VLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILN 207 (250)
T ss_dssp ----HHHHHHHHHHH--HHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGG
T ss_pred CCHHHHHHHHHHHHH--HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 343344444455444 3467899999999998887777777666666554568999999876543
No 18
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.71 E-value=3.6e-05 Score=84.22 Aligned_cols=43 Identities=16% Similarity=0.150 Sum_probs=34.4
Q ss_pred EEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcc
Q 001077 1109 LVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1109 LVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~ 1151 (1162)
|+||||--.|=++.--..|...+.++.+...+++++||-....
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~ 196 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHT 196 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 9999999999998877777776766654466899999987543
No 19
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.66 E-value=4.3e-05 Score=84.28 Aligned_cols=49 Identities=18% Similarity=0.185 Sum_probs=34.7
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc-ccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC-NAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~-~~~~~ 1155 (1162)
+....|+||||--.|-++.--..|...+.++ ..+++++||.... ..+.+
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~L~~~---~~tviivtHd~~~~~~~~d 193 (263)
T 2pjz_A 144 ASQPEIVGLDEPFENVDAARRHVISRYIKEY---GKEGILVTHELDMLNLYKE 193 (263)
T ss_dssp HTCCSEEEEECTTTTCCHHHHHHHHHHHHHS---CSEEEEEESCGGGGGGCTT
T ss_pred HhCCCEEEEECCccccCHHHHHHHHHHHHHh---cCcEEEEEcCHHHHHHhcC
Confidence 4678899999998887776665555544444 3389999999754 44555
No 20
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.63 E-value=0.0001 Score=81.54 Aligned_cols=60 Identities=15% Similarity=0.104 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhccc
Q 001077 1091 LTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNA 1152 (1162)
Q Consensus 1091 mvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~ 1152 (1162)
+.-...+|..| +....|+||||--.|=++.--..|...+.++.+...+++++||-.....
T Consensus 169 q~QRv~iAraL--~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~ 228 (267)
T 2zu0_C 169 EKKRNDILQMA--VLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILD 228 (267)
T ss_dssp HHHHHHHHHHH--HHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGG
T ss_pred HHHHHHHHHHH--HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHH
Confidence 33333344444 3567899999999998887777776666656444568999999876543
No 21
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.62 E-value=0.00011 Score=78.33 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=22.7
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVI 1052 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivI 1052 (1162)
..+++|+|||++||||++++++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999996554
No 22
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.62 E-value=5.1e-05 Score=82.56 Aligned_cols=46 Identities=13% Similarity=0.063 Sum_probs=37.7
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+....|+||||--.|=++.--..|...+.++.+...+++++||-..
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~ 200 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL 200 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 5788999999999999988877777777666555668999999874
No 23
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.61 E-value=0.00011 Score=80.61 Aligned_cols=52 Identities=12% Similarity=0.017 Sum_probs=39.7
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcc-cccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCN-AVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~-~~~~ 1155 (1162)
+....++||||--.|=++..-..|.-.+.++.+...+++++||..... .+.+
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d 221 (257)
T 1g6h_A 169 MTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYID 221 (257)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCS
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence 467889999999999998887777776766655467899999988543 3444
No 24
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.61 E-value=5.2e-05 Score=87.19 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=38.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhh-cccCceEEEehhhhcc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQ-SLAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~-~l~~~~~~~th~~~~~ 1151 (1162)
+....|+|+||--.|=++..-..|.-.+..+. +...+++++||-+...
T Consensus 179 ~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~ 227 (366)
T 3tui_C 179 ASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVV 227 (366)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHH
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 67889999999999988888777776666664 3477899999988543
No 25
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.59 E-value=0.00012 Score=73.48 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.1
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVI 1052 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivI 1052 (1162)
...++|+|||++||||+++.++-...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999886443
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.57 E-value=0.00014 Score=80.52 Aligned_cols=50 Identities=10% Similarity=0.083 Sum_probs=38.6
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhcccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~~~~ 1153 (1162)
+....|+||||--.|=++.--..|...+.++.+ ...+++++||-......
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~ 222 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER 222 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh
Confidence 678899999999999888877777766666543 35689999998865444
No 27
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.57 E-value=6.7e-05 Score=83.30 Aligned_cols=48 Identities=19% Similarity=0.152 Sum_probs=38.7
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhh-cccCceEEEehhhhcc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQ-SLAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~-~l~~~~~~~th~~~~~ 1151 (1162)
+....|+||||--.|=++.--..|.-.+.++. +...+++++||-+...
T Consensus 159 ~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 159 VMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIV 207 (275)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSG
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH
Confidence 67889999999999998888777776666665 4467899999998654
No 28
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.53 E-value=0.00012 Score=80.96 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=38.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~ 1151 (1162)
+....|+||||--.|-++.--..|...+.++.+-..+++++||.....
T Consensus 154 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~ 201 (266)
T 2yz2_A 154 VHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETV 201 (266)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTT
T ss_pred HcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 678899999999999998777777776666654467899999987543
No 29
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.52 E-value=3.7e-05 Score=83.12 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=22.6
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVI 1052 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivI 1052 (1162)
..+++|.|||++||||++|+++...+
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999985444
No 30
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.51 E-value=9.8e-05 Score=81.39 Aligned_cols=48 Identities=8% Similarity=0.012 Sum_probs=38.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~ 1151 (1162)
+....|+||||--.|=++.--..|.-.+.++.+...+++++||-+...
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~ 216 (262)
T 1b0u_A 169 AMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFA 216 (262)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHH
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 467889999999999988877777776666654467899999987543
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.50 E-value=0.00011 Score=79.92 Aligned_cols=49 Identities=6% Similarity=0.044 Sum_probs=37.5
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~ 1153 (1162)
+....|+||||--.|-++..-..|...+.++. ...+++++||.......
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~ 203 (243)
T 1mv5_A 155 LRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIVD 203 (243)
T ss_dssp HHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHHH
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHHh
Confidence 34668999999999988877777777676665 36689999998754433
No 32
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.49 E-value=0.00021 Score=82.01 Aligned_cols=48 Identities=15% Similarity=-0.027 Sum_probs=36.5
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHh-hcccCceEEEehhhhcc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGF-QSLAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~-~~l~~~~~~~th~~~~~ 1151 (1162)
+....|+||||--.|=++.--..|-..+..+ .+...+++++||-...+
T Consensus 154 ~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea 202 (359)
T 3fvq_A 154 APDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEA 202 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 5788999999999998887777665445553 45677899999987543
No 33
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.48 E-value=0.00013 Score=79.24 Aligned_cols=49 Identities=12% Similarity=0.079 Sum_probs=33.4
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHH---HhhcccCceEEEehhhhcccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSS---GFQSLAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~---~~~~l~~~~~~~th~~~~~~~ 1153 (1162)
+....++||||--.|=++.--..|...+. .+. ...+++++||-......
T Consensus 143 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~~~~ 194 (237)
T 2cbz_A 143 YSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSYLPQ 194 (237)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTTGGG
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHHHHh
Confidence 45678999999988888766555554342 122 24679999998765444
No 34
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.47 E-value=0.00022 Score=86.47 Aligned_cols=60 Identities=8% Similarity=-0.099 Sum_probs=43.0
Q ss_pred ccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1087 QSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1087 ~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
.|-=+.-...+|..| +....++||||--.|=+...-..|...+-.+.+ ..+++++||-..
T Consensus 139 LSgGe~Qrv~iA~aL--~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~ 198 (538)
T 3ozx_A 139 LSGGGLQRLLVAASL--LREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI 198 (538)
T ss_dssp CCHHHHHHHHHHHHH--HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH
T ss_pred CCHHHHHHHHHHHHH--HcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH
Confidence 333344444455555 467779999999998888877777766666765 778999999873
No 35
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.47 E-value=0.00016 Score=82.75 Aligned_cols=47 Identities=13% Similarity=-0.039 Sum_probs=36.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~ 1150 (1162)
+....|+||||--.|=+..--..|...+..+.+ ...+++++||-...
T Consensus 143 ~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~ 190 (348)
T 3d31_A 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTE 190 (348)
T ss_dssp TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 678899999999888887776666666666543 46789999998743
No 36
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.45 E-value=0.00023 Score=79.15 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=38.4
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCce--EEEehhhhcc-cccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQ--FLSTLFIKCN-AVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~--~~~th~~~~~-~~~~ 1155 (1162)
+....|+||||--.|=++.--..|.-.+.++.+...++ +++||-.... .+.+
T Consensus 177 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d 231 (279)
T 2ihy_A 177 MGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFS 231 (279)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCC
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCC
Confidence 46788999999999988877777766666664445678 9999997543 3433
No 37
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=97.45 E-value=0.00015 Score=60.38 Aligned_cols=44 Identities=27% Similarity=0.416 Sum_probs=40.2
Q ss_pred ccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEccCCchhhcc
Q 001077 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLD 148 (1162)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~ 148 (1162)
-||-.|.-.||+|+.||++.|++++..+..+.|.|-||.+|.|.
T Consensus 11 ~vgd~VmaRW~Gd~~yYparI~Si~s~~~~Y~V~fKdgT~e~L~ 54 (66)
T 2l8d_A 11 ADGEVVMGRWPGSVLYYEVQVTSYDDASHLYTVKYKDGTELALK 54 (66)
T ss_dssp CSSCEEEEECTTSSCEEEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred ecCCEEEEEcCCCccceEEEEEEeccCCceEEEEecCCCEEeec
Confidence 48999999999999999999999999999999999888887653
No 38
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.44 E-value=0.00012 Score=81.18 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=26.0
Q ss_pred cceecCCCCCcceEEEEccCCCChhHHHHHHHHHH
Q 001077 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1017 NDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
-|..+++-....+++|+|||++||||++++++..+
T Consensus 20 ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 20 LDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp CCEEETTEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hheeECCccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34434322235689999999999999999999743
No 39
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.44 E-value=0.00018 Score=82.69 Aligned_cols=47 Identities=15% Similarity=0.044 Sum_probs=37.5
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhh-cccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQ-SLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~-~l~~~~~~~th~~~~ 1150 (1162)
+....|+||||--.|=+..--..|...+..+. +...+++++||-...
T Consensus 156 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 203 (353)
T 1oxx_K 156 VKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPAD 203 (353)
T ss_dssp TTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHH
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 57889999999999998887777776666654 356789999998753
No 40
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.43 E-value=0.00027 Score=81.28 Aligned_cols=47 Identities=11% Similarity=-0.029 Sum_probs=36.6
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~ 1150 (1162)
+....|+||||--.|=++.--..|...+..+.+ ...+++++||-...
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 196 (359)
T 2yyz_A 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAE 196 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHH
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 578899999999888887777777666666543 46789999998754
No 41
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.43 E-value=0.00041 Score=76.31 Aligned_cols=49 Identities=6% Similarity=0.056 Sum_probs=38.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~ 1153 (1162)
+....|+||||--.|-++.--..|...+.++.+ ..+++++||.......
T Consensus 171 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~~~~ 219 (260)
T 2ghi_A 171 LKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLSTISS 219 (260)
T ss_dssp HHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGSTT
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHh
Confidence 356789999999999998887777766666654 5689999998865444
No 42
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.42 E-value=0.00022 Score=81.84 Aligned_cols=47 Identities=15% Similarity=0.129 Sum_probs=36.4
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~ 1150 (1162)
+....|+||||--.|=+..--..|...+..+.+ ...+++++||-...
T Consensus 161 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 208 (355)
T 1z47_A 161 APRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEE 208 (355)
T ss_dssp TTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence 578899999999888887777666666666543 46789999998754
No 43
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=97.42 E-value=0.00018 Score=59.99 Aligned_cols=50 Identities=26% Similarity=0.367 Sum_probs=42.9
Q ss_pred ccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEccCCchhhcccCCceEEE
Q 001077 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEW 156 (1162)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~~e~~~~ 156 (1162)
-||-.|...||+|+.||+++|++++....-+.|.|-||.+|.| ...+|+-
T Consensus 14 ~vgd~VmaRW~Gd~~yYparItSits~~~~Y~VkfKdgT~e~L--~~kDIKp 63 (68)
T 2dig_A 14 ADGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTELEL--KENDIKS 63 (68)
T ss_dssp CSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTTSCEEEE--ETTTEEC
T ss_pred ecCCEEEEEccCCccceEEEEEEeccCCceEEEEecCCCEEEe--chhcccc
Confidence 4899999999999999999999999999999999988887755 4445543
No 44
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.40 E-value=0.00016 Score=78.10 Aligned_cols=48 Identities=13% Similarity=-0.021 Sum_probs=31.8
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHH-HHhhcccCceEEEehhhhccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFS-SGFQSLAGSQFLSTLFIKCNA 1152 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~-~~~~~l~~~~~~~th~~~~~~ 1152 (1162)
+....|+||||--.|=++.--..|...+ ..+.+ ..+++++||......
T Consensus 146 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~~tvi~vtH~~~~~~ 194 (229)
T 2pze_A 146 YKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-NKTRILVTSKMEHLK 194 (229)
T ss_dssp HSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTT-TSEEEEECCCHHHHH
T ss_pred hcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhC-CCEEEEEcCChHHHH
Confidence 4567899999998888876555544322 12222 457999999875433
No 45
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.00023 Score=87.50 Aligned_cols=53 Identities=6% Similarity=-0.053 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1095 SETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1095 ~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
..+|..| +....++||||--.|=++..-..+...+-.+.+...+++++||-+.
T Consensus 230 v~iAraL--~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~ 282 (608)
T 3j16_B 230 FAIGMSC--VQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS 282 (608)
T ss_dssp HHHHHHH--HSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH
T ss_pred HHHHHHH--HhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 3344444 3567799999999999888887787777777666778999999874
No 46
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.37 E-value=0.00026 Score=81.57 Aligned_cols=47 Identities=13% Similarity=-0.038 Sum_probs=36.2
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhh-cccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQ-SLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~-~l~~~~~~~th~~~~ 1150 (1162)
+....|+||||--.|=+..--..|...+..+. +...+++++||-...
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 196 (362)
T 2it1_A 149 VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAE 196 (362)
T ss_dssp TTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 57889999999988888777766666666654 346789999998754
No 47
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.35 E-value=0.00046 Score=79.70 Aligned_cols=128 Identities=20% Similarity=0.189 Sum_probs=74.9
Q ss_pred cccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCc----------------cccCCc---ceeee
Q 001077 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI----------------FEISPV---DRIFV 1075 (1162)
Q Consensus 1015 VPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~----------------a~l~i~---DrIfT 1075 (1162)
+=+|+.|.-. ...++.|.|||++||||+||.++ |..-|-+. -.++.+ ..+|-
T Consensus 26 vl~~vsl~i~-~Ge~~~llGpnGsGKSTLLr~ia--------Gl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~ 96 (372)
T 1v43_A 26 AVNKLNLTIK-DGEFLVLLGPSGCGKTTTLRMIA--------GLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWP 96 (372)
T ss_dssp EEEEEEEEEC-TTCEEEEECCTTSSHHHHHHHHH--------TSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------
T ss_pred EEeeeEEEEC-CCCEEEEECCCCChHHHHHHHHH--------cCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCC
Confidence 4455555422 34689999999999999999998 65444311 111111 11344
Q ss_pred ecCCccchhhcccc---h-------HHHHHH----------------------HHHHHhcCCCCcEEEEcCCCCCCChhh
Q 001077 1076 RMGAKDHIMAGQST---F-------LTELSE----------------------TALMLSSATRNSLVVLDELGRGTSTSD 1123 (1162)
Q Consensus 1076 RIGa~D~i~~g~ST---F-------mvEM~E----------------------ta~IL~~AT~~SLVIlDELGRGTst~D 1123 (1162)
.+-..|||.-|..- - ..|+.+ ++-...-+....|+||||--.|=+..-
T Consensus 97 ~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~ 176 (372)
T 1v43_A 97 HMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKL 176 (372)
T ss_dssp CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence 44455666543210 0 111111 111111257788999999988888777
Q ss_pred HHHHHHHHHHhhc-ccCceEEEehhhhcc
Q 001077 1124 GQAIAVFSSGFQS-LAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1124 G~AIA~A~~~~~~-l~~~~~~~th~~~~~ 1151 (1162)
-..|...+..+.+ ...+++++||-...+
T Consensus 177 r~~l~~~l~~l~~~~g~tvi~vTHd~~~a 205 (372)
T 1v43_A 177 RVAMRAEIKKLQQKLKVTTIYVTHDQVEA 205 (372)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEESCHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 7777666666543 467899999987543
No 48
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.34 E-value=0.00025 Score=81.95 Aligned_cols=46 Identities=15% Similarity=0.024 Sum_probs=36.0
Q ss_pred CCCcEEEEcCCCCCCChhhHHHHHHHHHHhh-cccCceEEEehhhhc
Q 001077 1105 TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQ-SLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1105 T~~SLVIlDELGRGTst~DG~AIA~A~~~~~-~l~~~~~~~th~~~~ 1150 (1162)
....|+||||--.|=+..--..|-..+..+. +...+++++||-...
T Consensus 150 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~e 196 (381)
T 3rlf_A 150 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE 196 (381)
T ss_dssp HCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 4678999999988888877777766666664 457789999998743
No 49
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.34 E-value=5.8e-05 Score=77.48 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=18.4
Q ss_pred cceEEEEccCCCChhHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQ 1046 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRq 1046 (1162)
+.+++|.|||++||||++|.
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 46899999999999999995
No 50
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.33 E-value=0.00019 Score=80.30 Aligned_cols=49 Identities=12% Similarity=-0.055 Sum_probs=32.4
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHH-HhhcccCceEEEehhhhcccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSS-GFQSLAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~-~~~~l~~~~~~~th~~~~~~~ 1153 (1162)
+....|+||||--.|-++.--..|...+. .+. ...+++++||.......
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~~~~ 224 (290)
T 2bbs_A 175 YKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKK 224 (290)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHH
T ss_pred HCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHHHHc
Confidence 46778999999988888665554443221 122 24579999998865443
No 51
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.28 E-value=0.00058 Score=85.29 Aligned_cols=71 Identities=13% Similarity=0.035 Sum_probs=52.8
Q ss_pred cccchHHHHHHHHHHHhc-CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccce
Q 001077 1086 GQSTFLTELSETALMLSS-ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDCF 1156 (1162)
Q Consensus 1086 g~STFmvEM~Eta~IL~~-AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~~ 1156 (1162)
..|-=+--...+|..|-. .....|+||||--.|=++..-..|.-.+.++.+...+++++||.+......+.
T Consensus 543 ~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~ 614 (670)
T 3ux8_A 543 TLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADY 614 (670)
T ss_dssp GCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSE
T ss_pred hCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCE
Confidence 344445555566776654 34457999999999999999988888777777667789999999876555443
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.27 E-value=0.00046 Score=83.82 Aligned_cols=61 Identities=11% Similarity=-0.068 Sum_probs=41.4
Q ss_pred ccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1087 QSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1087 ~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
.|.=+.-+..+|..| +....|+||||--.|=++..-..+...+..+.+...+++++||-..
T Consensus 159 LSgGekQRv~iAraL--~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~ 219 (538)
T 1yqt_A 159 LSGGELQRVAIAAAL--LRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA 219 (538)
T ss_dssp CCHHHHHHHHHHHHH--HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CCHHHHHHHHHHHHH--hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 344444444555555 4677899999988877776665555555556555678999999864
No 53
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.27 E-value=0.00059 Score=85.22 Aligned_cols=70 Identities=16% Similarity=0.039 Sum_probs=51.7
Q ss_pred cccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccc
Q 001077 1086 GQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDC 1155 (1162)
Q Consensus 1086 g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~ 1155 (1162)
..|-=+--+..+|..|-...+..|+||||--.|=++..-..|...+..+.+...+++++||-+......+
T Consensus 202 ~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~d 271 (670)
T 3ux8_A 202 TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAAD 271 (670)
T ss_dssp GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCS
T ss_pred cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCC
Confidence 3444455566677777554444599999999999999988888777777666789999999986544433
No 54
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.26 E-value=0.00036 Score=80.70 Aligned_cols=47 Identities=11% Similarity=-0.035 Sum_probs=36.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~ 1150 (1162)
+....|+||||--.|=+..--..|...+..+.+ ...+++++||-...
T Consensus 155 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 202 (372)
T 1g29_1 155 VRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE 202 (372)
T ss_dssp HTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred hcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence 467889999999888887777766666666543 46789999998754
No 55
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.20 E-value=0.00038 Score=76.60 Aligned_cols=102 Identities=19% Similarity=0.196 Sum_probs=56.0
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHH-cCCcc----cCCcc---ccCCcceeeeecCCccchhhcccchHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQ-VGADV----PAEIF---EISPVDRIFVRMGAKDHIMAGQSTFLTELSETA 1098 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQ-iG~fV----PA~~a---~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta 1098 (1162)
..+++|+|||++||||+|+.++=.. -.. -|.-+ |-+.. .++++.+ ..+|- ...+|.+ .++
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~-~~~~~G~I~~~g~~i~~~~~~~~~~v~q--~~~gl------~~~~l~~---~la 92 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYI-NQTKSYHIITIEDPIEYVFKHKKSIVNQ--REVGE------DTKSFAD---ALR 92 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHH-HHHCCCEEEEEESSCCSCCCCSSSEEEE--EEBTT------TBSCHHH---HHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhC-CCCCCCEEEEcCCcceeecCCcceeeeH--HHhCC------CHHHHHH---HHH
Confidence 4589999999999999999876432 223 34221 11100 0011110 11221 1246643 455
Q ss_pred HHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1099 LMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1099 ~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
..|.. ...++|+||.- |-.++..++. .....+.++++||-..
T Consensus 93 ~aL~~--~p~illlDEp~------D~~~~~~~l~-~~~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 93 AALRE--DPDVIFVGEMR------DLETVETALR-AAETGHLVFGTLHTNT 134 (261)
T ss_dssp HHHHH--CCSEEEESCCC------SHHHHHHHHH-HHHTTCEEEEEECCSS
T ss_pred HHHhh--CCCEEEeCCCC------CHHHHHHHHH-HHccCCEEEEEeCcch
Confidence 66665 56799999985 3333333332 2234667888898654
No 56
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.19 E-value=0.0017 Score=82.86 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhcC-CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccceEe
Q 001077 1091 LTELSETALMLSSA-TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDCFQL 1158 (1162)
Q Consensus 1091 mvEM~Eta~IL~~A-T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~~~~ 1158 (1162)
+.-...+|..|-.- +...|+||||--.|-+..+-..|...+..+.....+++++||.+....+.+.-+
T Consensus 868 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIi 936 (993)
T 2ygr_A 868 EAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWII 936 (993)
T ss_dssp HHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 34444466666543 457899999999999999988888888777777789999999986655555433
No 57
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.18 E-value=0.00061 Score=83.76 Aligned_cols=60 Identities=10% Similarity=-0.027 Sum_probs=42.6
Q ss_pred cchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1088 STFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1088 STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
|.=+.-...+|..| +....|+||||--.|=+...-..|...+..+.+...+++++||-..
T Consensus 230 SGGekQRvaIAraL--~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~ 289 (607)
T 3bk7_A 230 SGGELQRVAIAAAL--LRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA 289 (607)
T ss_dssp CHHHHHHHHHHHHH--HSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CHHHHHHHHHHHHH--hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH
Confidence 33333444455555 4677899999998888887777777666666555678999999764
No 58
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.17 E-value=0.0013 Score=83.74 Aligned_cols=68 Identities=12% Similarity=0.066 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhcC-CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccceEe
Q 001077 1091 LTELSETALMLSSA-TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDCFQL 1158 (1162)
Q Consensus 1091 mvEM~Eta~IL~~A-T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~~~~ 1158 (1162)
+.-...+|..|-.- +...|+||||--.|-+..+-..|...+..+.+...+++++||.+....+.+.-+
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIi 918 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYII 918 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 33344456656443 457899999999999999988888877777777789999999987655555433
No 59
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.16 E-value=0.00028 Score=74.61 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.9
Q ss_pred CcceEEEEccCCCChhHHHHHHHH
Q 001077 1026 NASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
...+++|+|||++||||++++++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 60
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.15 E-value=0.00014 Score=78.06 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=23.7
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivIL 1053 (1162)
..+++|+|||++||||++++++..+++
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~ 50 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQL 50 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhC
Confidence 468999999999999999999976554
No 61
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.12 E-value=0.00025 Score=74.17 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=22.6
Q ss_pred eEEEEccCCCChhHHHHHHHHHHHHHHcC
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVG 1057 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG 1057 (1162)
++.|+|||++||||+++.++-..- .-|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~--~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK--SSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH--HTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcc--cCC
Confidence 588999999999999999886543 556
No 62
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.12 E-value=0.0004 Score=77.54 Aligned_cols=27 Identities=33% Similarity=0.306 Sum_probs=23.4
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivIL 1053 (1162)
..+++|.|||++||||++++++..+..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999876543
No 63
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.12 E-value=0.00012 Score=77.96 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=22.0
Q ss_pred cceEEEEccCCCChhHHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
..++.|.|||++||||++|+++-..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998543
No 64
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=97.09 E-value=0.00054 Score=58.60 Aligned_cols=45 Identities=20% Similarity=0.373 Sum_probs=40.0
Q ss_pred ccccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEccCCchhhccc
Q 001077 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDL 149 (1162)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l 149 (1162)
.--||-+|...| .|..||+|+|++.+.. +.+.|.|+||..|.|..
T Consensus 6 ~~~vGd~vmArW-~D~~yYpA~I~si~~~-~~Y~V~F~dG~~etvk~ 50 (67)
T 3p8d_A 6 EFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKH 50 (67)
T ss_dssp CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEEEEEG
T ss_pred ccccCCEEEEEc-CCCCEeeEEEEEECCC-CeEEEEEeCCceEEEeH
Confidence 456999999999 9999999999999998 67999999999886654
No 65
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.05 E-value=0.0034 Score=80.19 Aligned_cols=62 Identities=15% Similarity=0.060 Sum_probs=47.1
Q ss_pred HHHHHh-cCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccceEe
Q 001077 1097 TALMLS-SATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDCFQL 1158 (1162)
Q Consensus 1097 ta~IL~-~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~~~~ 1158 (1162)
+|..|. +.+...|+||||--.|=++.+-..|--.+-.+.+...+++++||-+...+..+.-+
T Consensus 816 LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIi 878 (916)
T 3pih_A 816 LASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHII 878 (916)
T ss_dssp HHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred HHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEE
Confidence 455553 34567899999999999999988888777777666789999999986555444433
No 66
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.01 E-value=0.00049 Score=79.15 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=54.0
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHc-CCcc-----cCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQV-GADV-----PAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALML 1101 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQi-G~fV-----PA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL 1101 (1162)
.+++|+|||++||||+|+.++-. +..- |.-| |.+.. +.-...++.... +....-+|.. -++.+|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i~t~ed~~e~~-~~~~~~~v~q~~----~~~~~~~~~~---~La~aL 193 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHILTIEDPIEFV-HESKKCLVNQRE----VHRDTLGFSE---ALRSAL 193 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEEEEEESSCCSC-CCCSSSEEEEEE----BTTTBSCHHH---HHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEEEEccCcHHhh-hhccccceeeee----eccccCCHHH---HHHHHh
Confidence 48999999999999999986532 2222 2211 21111 000001111111 1111124433 455556
Q ss_pred hcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1102 SSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1102 ~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
. ....++|+||.- |...+.. +.......+.++++||-..
T Consensus 194 ~--~~PdvillDEp~------d~e~~~~-~~~~~~~G~~vl~t~H~~~ 232 (356)
T 3jvv_A 194 R--EDPDIILVGEMR------DLETIRL-ALTAAETGHLVFGTLHTTS 232 (356)
T ss_dssp T--SCCSEEEESCCC------SHHHHHH-HHHHHHTTCEEEEEESCSS
T ss_pred h--hCcCEEecCCCC------CHHHHHH-HHHHHhcCCEEEEEEccCh
Confidence 4 567899999995 2322222 2233445677888888764
No 67
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=96.99 E-value=0.00053 Score=64.36 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=39.5
Q ss_pred cCccccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEccCCchhhcc
Q 001077 101 YGEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLD 148 (1162)
Q Consensus 101 ~~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~ 148 (1162)
.+.+++|.||-..|+++..||.|+|+. +...++++|.+|||++-.|.
T Consensus 2 ~~~~~~G~rV~AkWsdn~~yYpG~V~~-~~~~~ky~V~FdDg~~~~v~ 48 (123)
T 2g3r_A 2 HMNSFVGLRVVAKWSSNGYFYSGKITR-DVGAGKYKLLFDDGYECDVL 48 (123)
T ss_dssp ---CCTTCEEEEECTTTCCEEEEEEEE-EEETTEEEEEETTSCEEEEE
T ss_pred CCccccceEEEEEeccCCcCcccEEEE-eccCCeEEEEEcCCCeeEee
Confidence 367899999999999888999999999 48888999999999976543
No 68
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.95 E-value=0.0012 Score=74.14 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=35.9
Q ss_pred CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcc
Q 001077 1105 TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1105 T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~ 1151 (1162)
....++||||--.|-++.--..|...+..+.. ..+++++||-....
T Consensus 207 ~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~ 252 (306)
T 3nh6_A 207 KAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLSTV 252 (306)
T ss_dssp HCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHHH
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHHH
Confidence 35689999999999998888777776766544 46899999987443
No 69
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.95 E-value=0.0026 Score=74.28 Aligned_cols=63 Identities=19% Similarity=0.109 Sum_probs=42.1
Q ss_pred HHHHHHHH-hcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccceEe
Q 001077 1094 LSETALML-SSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDCFQL 1158 (1162)
Q Consensus 1094 M~Eta~IL-~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~~~~ 1158 (1162)
+..+|..| ....+ .++||||.-.|=+...-..|.-.+..+. ....++++||-....++.+-.+
T Consensus 303 rl~lA~~l~~~~~~-~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~~~~d~i~ 366 (415)
T 4aby_A 303 RVMLAVSTVLGADT-PSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAARAHHHY 366 (415)
T ss_dssp HHHHHHHHHHCCSS-SEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHTTCSEEE
T ss_pred HHHHHHHHHhCCCC-CEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHhhcCeEE
Confidence 33344443 33333 8999999988877777777766666554 2578999999886666654433
No 70
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.94 E-value=0.00077 Score=59.15 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=42.4
Q ss_pred CccccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEccCCchhhcccCCceEEEE
Q 001077 102 GEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLGKEKIEWV 157 (1162)
Q Consensus 102 ~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~~e~~~~~ 157 (1162)
...-||.+|...|. |+.||.|+|++.+.. +...|.|+|+..|.|. ..+++-+
T Consensus 8 ~~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~-~~~~V~f~Dyn~e~v~--~~~lrpl 59 (74)
T 2equ_A 8 FDFKAGEEVLARWT-DCRYYPAKIEAINKE-GTFTVQFYDGVIRCLK--RMHIKAM 59 (74)
T ss_dssp CCCCTTCEEEEECS-SSSEEEEEEEEESTT-SSEEEEETTSCEEEEC--GGGEECC
T ss_pred CCCCCCCEEEEECC-CCCEEEEEEEEECCC-CEEEEEEecCCeEEec--HHHCeeC
Confidence 34568999999999 999999999999876 6899999999877664 3445544
No 71
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.94 E-value=0.0018 Score=78.64 Aligned_cols=47 Identities=9% Similarity=-0.004 Sum_probs=37.8
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhh-cccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQ-SLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~-~l~~~~~~~th~~~~ 1150 (1162)
+....|+||||--+|=+..--..|.-.+.++. +...+++++||-...
T Consensus 417 ~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~ 464 (538)
T 1yqt_A 417 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLM 464 (538)
T ss_dssp TSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 56788999999999998887777777776664 356789999998754
No 72
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.90 E-value=0.0016 Score=80.04 Aligned_cols=48 Identities=8% Similarity=-0.023 Sum_probs=38.1
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhh-cccCceEEEehhhhcc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQ-SLAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~-~l~~~~~~~th~~~~~ 1151 (1162)
+....|+||||--.|=+..--..|.-.+..+. +...+++++||-....
T Consensus 487 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~ 535 (607)
T 3bk7_A 487 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI 535 (607)
T ss_dssp TSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred HhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 56788999999999998887777777776664 3467899999987543
No 73
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.89 E-value=0.0019 Score=68.47 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=23.8
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcCC
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~ 1058 (1162)
.++.|.|||++||||+||.++-+ -..-|.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl--~p~~G~ 51 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ--ALQSKQ 51 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH--HHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC--CCcCCe
Confidence 57899999999999999999866 344454
No 74
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=96.88 E-value=0.00097 Score=59.43 Aligned_cols=46 Identities=20% Similarity=0.368 Sum_probs=40.1
Q ss_pred CccccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEccCCchhhccc
Q 001077 102 GEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDL 149 (1162)
Q Consensus 102 ~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l 149 (1162)
....||.+|...| .|..||.|+|++.+.. +.+.|.|+||..|.|..
T Consensus 20 ~~f~vGd~VlArW-~D~~yYPAkI~sV~~~-~~YtV~F~DG~~etvk~ 65 (85)
T 3qii_A 20 SEFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKH 65 (85)
T ss_dssp -CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEEEEEG
T ss_pred cccccCCEEEEEe-CCCCEeeEEEEEECCC-CeEEEEEeCCCeEEecH
Confidence 3556999999999 9999999999999988 57999999999886643
No 75
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.80 E-value=0.0019 Score=74.09 Aligned_cols=131 Identities=18% Similarity=0.242 Sum_probs=71.1
Q ss_pred ccccceecC--CCCCcceEEEEccCCCChhHHHHHHHHHHHHHH-cCCcccCCccccCCcce-eeeecCCc-cchhhccc
Q 001077 1014 FVPNDITIG--GHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ-VGADVPAEIFEISPVDR-IFVRMGAK-DHIMAGQS 1088 (1162)
Q Consensus 1014 fVPNDi~l~--~~~~~~~~IITGPNMgGKST~LRqvaLivILAQ-iG~fVPA~~a~l~i~Dr-IfTRIGa~-D~i~~g~S 1088 (1162)
+-.-|..|+ +-...++++|.|||++||||++.|++..+.... --.|+-++.. ++. ...|+|-. |++.--..
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~----~~~~~a~~lG~~~~~l~i~~~ 121 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA----LDPEYAKKLGVDTDSLLVSQP 121 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC----CCHHHHHHTTCCGGGCEEECC
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC----cCHHHHHHcCCCHHHeEEecC
Confidence 334455555 222357899999999999999999987665321 1145555432 111 12233321 22211111
Q ss_pred chHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhh-----H-----H---HHHHHHHHh----hcccCceEEEehhh
Q 001077 1089 TFLTELSETALMLSSATRNSLVVLDELGRGTSTSD-----G-----Q---AIAVFSSGF----QSLAGSQFLSTLFI 1148 (1162)
Q Consensus 1089 TFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~D-----G-----~---AIA~A~~~~----~~l~~~~~~~th~~ 1148 (1162)
+=..++.+++..|-....-.|||||++.......+ | . .++..+..+ .+...++++++|..
T Consensus 122 ~~~e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~ 198 (349)
T 2zr9_A 122 DTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELR 198 (349)
T ss_dssp SSHHHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 11334555555454455678999999998874221 1 1 233333333 45566677777754
No 76
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.002 Score=79.14 Aligned_cols=49 Identities=8% Similarity=0.005 Sum_probs=39.3
Q ss_pred cCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhh-cccCceEEEehhhhcc
Q 001077 1103 SATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQ-SLAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1103 ~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~-~l~~~~~~~th~~~~~ 1151 (1162)
-+....|+||||--+|=+..--..|.-.+.++. +...+++++||-+...
T Consensus 482 L~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~ 531 (608)
T 3j16_B 482 LGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMA 531 (608)
T ss_dssp TTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH
T ss_pred HHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 467889999999999999888877777776664 4567899999987543
No 77
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.79 E-value=0.0024 Score=73.69 Aligned_cols=51 Identities=16% Similarity=0.001 Sum_probs=38.0
Q ss_pred CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccc
Q 001077 1105 TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDC 1155 (1162)
Q Consensus 1105 T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~ 1155 (1162)
....++||||--.|=++..-..|.-.+..+.....+++++||-.......+
T Consensus 302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d 352 (365)
T 3qf7_A 302 GRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFD 352 (365)
T ss_dssp TTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCS
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCC
Confidence 466799999988888877776666656666656678999999987644433
No 78
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.78 E-value=0.0017 Score=78.64 Aligned_cols=48 Identities=15% Similarity=0.089 Sum_probs=38.5
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhc-ccCceEEEehhhhcc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQS-LAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~-l~~~~~~~th~~~~~ 1151 (1162)
+....++||||--+|=+..--..|.-.+.++.. ...+++++||-+...
T Consensus 401 ~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~ 449 (538)
T 3ozx_A 401 AKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIH 449 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 567889999999999998888888777777654 466889999988543
No 79
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.74 E-value=0.0013 Score=84.26 Aligned_cols=126 Identities=17% Similarity=0.143 Sum_probs=66.5
Q ss_pred cccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcC---------CcccCC----ccccCCccee--------
Q 001077 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG---------ADVPAE----IFEISPVDRI-------- 1073 (1162)
Q Consensus 1015 VPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG---------~fVPA~----~a~l~i~DrI-------- 1073 (1162)
+=+|+.|.- ..+.++.|.||||+||||+||.++=-.| -| .|||-+ ...+++.+.|
T Consensus 450 iL~~vsl~I-~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~ 525 (986)
T 2iw3_A 450 LLNKTQLRL-KRARRYGICGPNGCGKSTLMRAIANGQV---DGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTK 525 (986)
T ss_dssp EEEEEEEEE-ETTCEEEEECSTTSSHHHHHHHHHHTCS---TTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCH
T ss_pred eEecceEEE-cCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHH
Confidence 334454432 1246899999999999999999972100 02 133311 1112222222
Q ss_pred ------eeecCCc-c---chhhcccchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEE
Q 001077 1074 ------FVRMGAK-D---HIMAGQSTFLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFL 1143 (1162)
Q Consensus 1074 ------fTRIGa~-D---~i~~g~STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~ 1143 (1162)
+.++|-. + ......|.=+.-...++..| +....|+||||--.|=+..--..|.-. +.+...++++
T Consensus 526 ~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL--~~~P~lLLLDEPTs~LD~~~~~~l~~~---L~~~g~tvIi 600 (986)
T 2iw3_A 526 EAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAV--LRNADILLLDEPTNHLDTVNVAWLVNY---LNTCGITSIT 600 (986)
T ss_dssp HHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHH--HTTCSEEEEESTTTTCCHHHHHHHHHH---HHHSCSEEEE
T ss_pred HHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHH--hcCCCEEEEECCccCCCHHHHHHHHHH---HHhCCCEEEE
Confidence 2222321 1 11122333333333444444 356789999998766665444333333 3334668999
Q ss_pred Eehhhh
Q 001077 1144 STLFIK 1149 (1162)
Q Consensus 1144 ~th~~~ 1149 (1162)
+||-..
T Consensus 601 vSHdl~ 606 (986)
T 2iw3_A 601 ISHDSV 606 (986)
T ss_dssp ECSCHH
T ss_pred EECCHH
Confidence 999873
No 80
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=96.71 E-value=0.0017 Score=54.57 Aligned_cols=46 Identities=22% Similarity=0.381 Sum_probs=41.0
Q ss_pred ccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEccC-CchhhcccC
Q 001077 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD-GEDELLDLG 150 (1162)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd-g~~e~l~l~ 150 (1162)
-+|..|...|..|+.||.|+|++.++..+...|.|.| |..|.+.++
T Consensus 5 ~~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~ 51 (59)
T 1mhn_A 5 KVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLS 51 (59)
T ss_dssp CTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGG
T ss_pred CcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHH
Confidence 4799999999999999999999999888899999966 988877654
No 81
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.64 E-value=0.0017 Score=75.57 Aligned_cols=34 Identities=26% Similarity=0.253 Sum_probs=26.3
Q ss_pred ccccceecCCCCCcceEEEEccCCCChhHHHHHHH
Q 001077 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1014 fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1162)
.+=+|+.|.-. ...++.|.|||++||||+||.++
T Consensus 35 ~~L~~vsl~i~-~Ge~~~llGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 35 AILENISFSIS-PGQRVGLLGRTGSGKSTLLSAFL 68 (390)
T ss_dssp CSEEEEEEEEC-TTCEEEEEESTTSSHHHHHHHHH
T ss_pred EEeeceeEEEc-CCCEEEEECCCCChHHHHHHHHh
Confidence 34456665432 34689999999999999999998
No 82
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.56 E-value=0.0047 Score=75.74 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=37.3
Q ss_pred CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccc
Q 001077 1105 TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1105 T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~ 1153 (1162)
.+..++||||--.|=++.--..|.-.+.++.+ ..+++++||-......
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~ 544 (582)
T 3b60_A 497 RDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIEQ 544 (582)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTTT
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHHHHh
Confidence 45679999999999888888777777776654 6789999998754433
No 83
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.55 E-value=0.013 Score=66.29 Aligned_cols=69 Identities=13% Similarity=-0.021 Sum_probs=48.1
Q ss_pred cccchHHHHHHHHHHHhc--CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccc
Q 001077 1086 GQSTFLTELSETALMLSS--ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDC 1155 (1162)
Q Consensus 1086 g~STFmvEM~Eta~IL~~--AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~ 1155 (1162)
..|.=+.-+..++..|.. ..+..++||||.-.|-++..-..|...+..+.+ ...++++||......+.+
T Consensus 219 ~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~tH~~~~~~~~d 289 (322)
T 1e69_A 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKIVMEAAD 289 (322)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTTGGGGCS
T ss_pred hCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEECCHHHHhhCc
Confidence 445555666667776643 245679999999999998888777776666533 457899999865444433
No 84
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.54 E-value=0.0033 Score=77.33 Aligned_cols=45 Identities=11% Similarity=0.162 Sum_probs=36.3
Q ss_pred CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1105 TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1105 T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
....++||||--.|-++.-...|...+.++.+ ..+++++||-...
T Consensus 508 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~ 552 (598)
T 3qf4_B 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLME-GKTSIIIAHRLNT 552 (598)
T ss_dssp TCCSEEEECCCCTTCCHHHHHHHHHHHHHHHT-TSEEEEESCCTTH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH
Confidence 56789999999999888888888777766643 6789999998744
No 85
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.54 E-value=0.0063 Score=74.64 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=36.3
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
+.+..++||||--.|=++.--..|...+.++.+ ..+++++||....
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~ 541 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLST 541 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH
Confidence 356789999999888888877777776766654 6689999998744
No 86
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=95.51 E-value=0.00042 Score=61.52 Aligned_cols=45 Identities=18% Similarity=0.343 Sum_probs=38.9
Q ss_pred cccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEccCCchhhcccC
Q 001077 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (1162)
Q Consensus 104 ~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~ 150 (1162)
.-+|.+|...|. |+.||.|+|++.+.. +.+.|.|+||..|.|.+.
T Consensus 7 ~kvGd~clAkws-Dg~wY~A~I~~v~~~-~~y~V~F~DGn~E~V~~s 51 (81)
T 2ldm_A 7 FQINEQVLASWS-DSRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI 51 (81)
Confidence 448999999999 999999999999864 479999988998877654
No 87
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=96.46 E-value=0.0035 Score=52.86 Aligned_cols=45 Identities=13% Similarity=0.280 Sum_probs=41.4
Q ss_pred ccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEccCCchhhcccC
Q 001077 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (1162)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~ 150 (1162)
-+|..|...| .|..||+|+|+.-|...+...|+|.||..-|+...
T Consensus 15 ~vGddVLA~w-tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~k 59 (66)
T 2eqj_A 15 EEGQDVLARW-SDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWK 59 (66)
T ss_dssp CTTCEEEEEC-TTSCEEEEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred cCCCEEEEEE-ccCcEEEeEEEEEccCCcEEEEEEccCCEEEEEee
Confidence 4899999999 89999999999999999999999999998877654
No 88
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.41 E-value=0.0054 Score=65.66 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.9
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVI 1052 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivI 1052 (1162)
..+++|+|||++||||++.+++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999887664
No 89
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.39 E-value=0.009 Score=65.94 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.1
Q ss_pred eEEEEccCCCChhHHHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
.+.|.|||++||||+||.++-..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37799999999999999998654
No 90
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.38 E-value=0.0044 Score=78.50 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=43.8
Q ss_pred CCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccceEe
Q 001077 1106 RNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDCFQL 1158 (1162)
Q Consensus 1106 ~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~~~~ 1158 (1162)
...|+||||-=+|-+..+-..|...+..+.+...+++++||.+....+.+.-+
T Consensus 751 ~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii 803 (842)
T 2vf7_A 751 GGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVL 803 (842)
T ss_dssp SCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 46899999999999999998888888777777889999999986556655444
No 91
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=96.37 E-value=0.0032 Score=61.71 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=40.6
Q ss_pred cccCccccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEccCCchhhcc
Q 001077 99 KSYGEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLD 148 (1162)
Q Consensus 99 ~~~~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~ 148 (1162)
+..|.++||.||-..|.++.-||.|+|+.+ ...+++.|.+|||..-.|.
T Consensus 4 ~~~~~~~iG~rVfArWsd~~yyYpG~V~~~-~~~~~Y~V~FdDG~~k~v~ 52 (156)
T 1ssf_A 4 SSSGNSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYECDVL 52 (156)
T ss_dssp ----CCSTTCEEEECSSCSSEEEEEEEEEC-CTTTEEEEECTTSCEEEEE
T ss_pred CCCCcchhccEEEEEcCCCCcccccEEEEe-ccCCEEEEEEcCCCeeEee
Confidence 345778999999999999999999999996 6777799999999977654
No 92
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.32 E-value=0.006 Score=69.97 Aligned_cols=102 Identities=20% Similarity=0.190 Sum_probs=57.4
Q ss_pred ccccceecC-C-CCCcceEEEEccCCCChhHHHHHHHHHHHHHHcC---CcccCCccccCCcceeeeecCCc-cchhhcc
Q 001077 1014 FVPNDITIG-G-HGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG---ADVPAEIFEISPVDRIFVRMGAK-DHIMAGQ 1087 (1162)
Q Consensus 1014 fVPNDi~l~-~-~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG---~fVPA~~a~l~i~DrIfTRIGa~-D~i~~g~ 1087 (1162)
+-.-|-.|+ + -...++++|+|||++|||||+.|++..+. .-| .||-++...-. ....|+|.. +++.--.
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~---~ra~rlgv~~~~l~i~~ 120 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDP---VYAKNLGVDLKSLLISQ 120 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCH---HHHHHHTCCGGGCEEEC
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccch---HHHHHcCCchhhhhhhh
Confidence 334455555 2 22357999999999999999999986543 334 25554432110 123344432 3332222
Q ss_pred cchHHHHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q 001077 1088 STFLTELSETALMLSSATRNSLVVLDELGRGTS 1120 (1162)
Q Consensus 1088 STFmvEM~Eta~IL~~AT~~SLVIlDELGRGTs 1120 (1162)
-+-..++.++..-+-......+||||.+..=..
T Consensus 121 ~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 121 PDHGEQALEIVDELVRSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp CSSHHHHHHHHHHHHHTSCCSEEEEECTTTCCC
T ss_pred ccCHHHHHHHHHHHhhhcCCCeEEehHhhhhcC
Confidence 222334445444444445678999999876443
No 93
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.32 E-value=0.0031 Score=73.00 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=20.9
Q ss_pred cceEEEEccCCCChhHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1162)
..+++|+|||++||||+|+.++-.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 458999999999999999987743
No 94
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.31 E-value=0.0061 Score=69.83 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=22.4
Q ss_pred cceEEEEccCCCChhHHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
.+++.|.|||++||||++++++..+
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998654
No 95
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.30 E-value=0.0028 Score=71.99 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.1
Q ss_pred CcceEEEEccCCCChhHHHHHHHHH
Q 001077 1026 NASFILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLi 1050 (1162)
.+.++.|.|||++||||+++.++-.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998854
No 96
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.28 E-value=0.023 Score=69.52 Aligned_cols=47 Identities=9% Similarity=0.089 Sum_probs=34.9
Q ss_pred CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhccc
Q 001077 1105 TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNA 1152 (1162)
Q Consensus 1105 T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~ 1152 (1162)
.+..++||||--.|=++.--..|...+.++.+ ..+++++||-.....
T Consensus 494 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~l~~~~ 540 (578)
T 4a82_A 494 NNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLSTIT 540 (578)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGTT
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHH
Confidence 35789999999988888766666666655543 468999999885443
No 97
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=96.25 E-value=0.005 Score=50.62 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=38.2
Q ss_pred cCceEEEeccCCCeEEeEEEEeecCCCCeEEEEcc-CCchhhcccC
Q 001077 106 LRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYD-DGEDELLDLG 150 (1162)
Q Consensus 106 vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yd-dg~~e~l~l~ 150 (1162)
+|..|...|..|+.||.|+|.+.++..+...|.|. =|..|.+.++
T Consensus 4 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~e~v~~~ 49 (54)
T 3s6w_A 4 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLS 49 (54)
T ss_dssp TTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCEEEEEGG
T ss_pred CCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCeEEEeHH
Confidence 78999999999999999999999988888999994 4988877654
No 98
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=96.23 E-value=0.0064 Score=51.90 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=41.7
Q ss_pred ccccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEccC-CchhhcccC
Q 001077 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD-GEDELLDLG 150 (1162)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd-g~~e~l~l~ 150 (1162)
..-+|..|...|..|+.||.|+|.+.+...+...|.|.| |..|.+.++
T Consensus 8 ~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~ 56 (64)
T 4a4f_A 8 SWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLL 56 (64)
T ss_dssp CCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGG
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHH
Confidence 445899999999999999999999999988899999954 888877654
No 99
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.22 E-value=0.0038 Score=71.02 Aligned_cols=112 Identities=18% Similarity=0.070 Sum_probs=58.4
Q ss_pred cccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecC-Cccc--hh--hcccc
Q 001077 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMG-AKDH--IM--AGQST 1089 (1162)
Q Consensus 1015 VPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIG-a~D~--i~--~g~ST 1089 (1162)
+.+++.+.- ....+++|+|||++||||+||.++ |.+-| .+-.+.+-|..-..+. ..+. +. .|+ +
T Consensus 160 ~l~~l~~~i-~~g~~v~i~G~~GsGKTTll~~l~--------g~~~~-~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~-~ 228 (330)
T 2pt7_A 160 AISAIKDGI-AIGKNVIVCGGTGSGKTTYIKSIM--------EFIPK-EERIISIEDTEEIVFKHHKNYTQLFFGGNI-T 228 (330)
T ss_dssp HHHHHHHHH-HHTCCEEEEESTTSCHHHHHHHGG--------GGSCT-TSCEEEEESSCCCCCSSCSSEEEEECBTTB-C
T ss_pred HHhhhhhhc-cCCCEEEEECCCCCCHHHHHHHHh--------CCCcC-CCcEEEECCeeccccccchhEEEEEeCCCh-h
Confidence 455555532 123579999999999999999987 65544 4434433332111111 0011 11 122 2
Q ss_pred hHHHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhh
Q 001077 1090 FLTELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIK 1149 (1162)
Q Consensus 1090 FmvEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~ 1149 (1162)
+. .-++..|. ....++||||.-. .+ +..++..+..-..+++++||-..
T Consensus 229 ~r---~~la~aL~--~~p~ilildE~~~----~e---~~~~l~~~~~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 229 SA---DCLKSCLR--MRPDRIILGELRS----SE---AYDFYNVLCSGHKGTLTTLHAGS 276 (330)
T ss_dssp HH---HHHHHHTT--SCCSEEEECCCCS----TH---HHHHHHHHHTTCCCEEEEEECSS
T ss_pred HH---HHHHHHhh--hCCCEEEEcCCCh----HH---HHHHHHHHhcCCCEEEEEEcccH
Confidence 22 22344443 5678999999753 11 11223323322225788999764
No 100
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.21 E-value=0.0021 Score=67.73 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=21.4
Q ss_pred cccccceecCCCCCcceEEEEccCCCChhHHHHHHHHH
Q 001077 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1013 ~fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLi 1050 (1162)
.+|+|+-.+.. ..++.|.|||++||||++|.++=+
T Consensus 9 ~~~~~~~~i~~---Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 9 KPTARGQPAAV---GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ----------C---CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCCCCCCC---CCEEEEECCCCCCHHHHHHHHHhh
Confidence 68888866543 468999999999999999998643
No 101
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.15 E-value=0.045 Score=67.08 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=38.1
Q ss_pred CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhccccc
Q 001077 1105 TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVD 1154 (1162)
Q Consensus 1105 T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~ 1154 (1162)
.+..++||||--.|-++.-...|..++.++.+ ..+++++||-.......
T Consensus 496 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~~~~~ 544 (587)
T 3qf4_A 496 KKPKVLILDDCTSSVDPITEKRILDGLKRYTK-GCTTFIITQKIPTALLA 544 (587)
T ss_dssp TCCSEEEEESCCTTSCHHHHHHHHHHHHHHST-TCEEEEEESCHHHHTTS
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhCC-CCEEEEEecChHHHHhC
Confidence 46789999999999988888888777766543 67899999988554433
No 102
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=96.14 E-value=0.0058 Score=55.48 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=41.1
Q ss_pred ccccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEc-cCCchhhcccC
Q 001077 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLG 150 (1162)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~l~l~ 150 (1162)
..-||..|...|..|+.||.|+|.+.++..+...|.| |=|..|.|.++
T Consensus 10 ~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~ 58 (88)
T 1g5v_A 10 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLS 58 (88)
T ss_dssp CCCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGG
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHH
Confidence 3458999999999999999999999999888999999 45888766554
No 103
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.13 E-value=0.0058 Score=75.26 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=22.6
Q ss_pred eEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCC
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISP 1069 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i 1069 (1162)
.+.|.|||++||||+|+.++ |.+.|-.+..+.+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~--------Gl~~P~~sG~vt~ 79 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALS--------GVALPRGSGIVTR 79 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHH--------SCC-------CCC
T ss_pred eEEEECCCCChHHHHHHHHh--------CCCCCCCCCeEEE
Confidence 38899999999999999998 8887844433433
No 104
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.0049 Score=73.25 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=21.2
Q ss_pred cceEEEEccCCCChhHHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
..++.|.|||++||||+||.++=+.
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3578999999999999999987543
No 105
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.02 E-value=0.0091 Score=73.38 Aligned_cols=45 Identities=7% Similarity=0.090 Sum_probs=35.1
Q ss_pred CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1105 TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1105 T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
.+..++||||--.|=++.--..|...+.++.+ ..+++++||-...
T Consensus 500 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~ 544 (595)
T 2yl4_A 500 KNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLST 544 (595)
T ss_dssp HCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHH
T ss_pred cCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH
Confidence 46779999999888888877777666666655 5789999998743
No 106
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.00 E-value=0.003 Score=73.66 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=23.8
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivIL 1053 (1162)
..+++|+|||++|||||++++|+.+.+
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~ 204 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQI 204 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhcc
Confidence 468999999999999999999877654
No 107
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.93 E-value=0.0063 Score=77.99 Aligned_cols=49 Identities=18% Similarity=0.155 Sum_probs=34.6
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc-ccccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC-NAVDC 1155 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~-~~~~~ 1155 (1162)
+....|+||||--.|=+..--..|.-+ +.++..+++++||-... ..+.+
T Consensus 917 ~~~P~LLLLDEPT~gLD~~s~~~L~~~---L~~~g~tVIiISHD~e~v~~l~D 966 (986)
T 2iw3_A 917 WQRPHLIVLDEPTNYLDRDSLGALSKA---LKEFEGGVIIITHSAEFTKNLTE 966 (986)
T ss_dssp TTCCSEEEEECGGGTCCHHHHHHHHHH---HHSCSSEEEEECSCHHHHTTTCC
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHH---HHHhCCEEEEEECCHHHHHHhCC
Confidence 567889999999888886554444443 44556799999998754 34443
No 108
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.84 E-value=0.0083 Score=68.21 Aligned_cols=20 Identities=40% Similarity=0.444 Sum_probs=18.6
Q ss_pred EEEEccCCCChhHHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaL 1049 (1162)
++|+||||+||||++|.++-
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998875
No 109
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=95.76 E-value=0.03 Score=48.17 Aligned_cols=45 Identities=24% Similarity=0.357 Sum_probs=39.9
Q ss_pred ccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEccCCchhhcccC
Q 001077 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (1162)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~ 150 (1162)
-+|..|=+.|- |..||-|+|+..|....+..|+++||.+-|+...
T Consensus 28 ~eGeDVLarws-DGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~~~k 72 (79)
T 2m0o_A 28 WEGQDVLARWT-DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWK 72 (79)
T ss_dssp CTTCEEEBCCT-TSCCCEEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred ccCCEEEEEec-CCCEEeEEEEEeccCCCEEEEEEcCCCeEEEEee
Confidence 37888889996 8899999999999999999999999998887654
No 110
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.74 E-value=0.0067 Score=63.25 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=20.5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
+.++|+||++.||||+++.++-..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999877443
No 111
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.68 E-value=0.0048 Score=64.33 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=20.4
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
+.+++|+|||++||||++|.++-
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999998863
No 112
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.65 E-value=0.0048 Score=62.48 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=27.1
Q ss_pred ccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHH
Q 001077 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1014 fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
.+-+++.+.-. ...++.|.|||++||||++|.++=+.
T Consensus 21 ~~l~~vsl~i~-~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 21 FAEILLKLHTE-KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHHCCS-SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHhccccccC-CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34455555432 34689999999999999999988543
No 113
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.64 E-value=0.0046 Score=63.95 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=19.3
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
++++|+|||++||||++|.++
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~ 22 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999876
No 114
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.60 E-value=0.0093 Score=70.91 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.3
Q ss_pred cceEEEEccCCCChhHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1162)
+.+++|.||||+||||+|+.++-.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHH
Confidence 468999999999999999998754
No 115
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.59 E-value=0.14 Score=58.07 Aligned_cols=50 Identities=14% Similarity=0.058 Sum_probs=36.7
Q ss_pred CCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccc
Q 001077 1104 ATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAV 1153 (1162)
Q Consensus 1104 AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~ 1153 (1162)
+....++||||.-.|=++..-..|.-.+..+..-..+++++||-..+..+
T Consensus 270 ~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~ 319 (339)
T 3qkt_A 270 AGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDA 319 (339)
T ss_dssp TTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGG
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHh
Confidence 46778999999999888877766666555555445579999998654443
No 116
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.59 E-value=0.0056 Score=66.29 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=21.0
Q ss_pred cccceecCCCCCcceEEEEccCCCChhHHHHHHHH
Q 001077 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1015 VPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
+=+|+.|.-. ...++.|||||++||||++|.++-
T Consensus 14 ~l~~isl~i~-~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 14 GTENLYFQSM-RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp ---------C-CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred eecceeccCC-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 4455555432 346899999999999999998764
No 117
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.49 E-value=0.024 Score=67.03 Aligned_cols=98 Identities=11% Similarity=0.149 Sum_probs=52.8
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHH------HHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSE------TALML 1101 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~E------ta~IL 1101 (1162)
+.++|+||+|.||||+++.+|-...-..-|..| +| +.+ +.|..++.+ ...+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v------------~~--v~~--------~~~~~~~~~~~~~~~~~~~~ 188 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRV------------MY--ITS--------EKFLNDLVDSMKEGKLNEFR 188 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCE------------EE--EEH--------HHHHHHHHHHHHTTCHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeE------------EE--eeH--------HHHHHHHHHHHHcccHHHHH
Confidence 459999999999999999988543221112211 11 111 112222211 11122
Q ss_pred hcCC-CCcEEEEcCCCCCCChhhH-HHHHHHHHHhhcccCceEEEehh
Q 001077 1102 SSAT-RNSLVVLDELGRGTSTSDG-QAIAVFSSGFQSLAGSQFLSTLF 1147 (1162)
Q Consensus 1102 ~~AT-~~SLVIlDELGRGTst~DG-~AIA~A~~~~~~l~~~~~~~th~ 1147 (1162)
.... ...+++|||+.+-...... ..+...+-.+.+....++++||.
T Consensus 189 ~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 189 EKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp HHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred HHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 2223 6789999999887653222 22333333344445567888875
No 118
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.48 E-value=0.013 Score=62.10 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=21.4
Q ss_pred cceEEEEccCCCChhHHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
.+.++|+||.+.||||+++.++-..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999887543
No 119
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.34 E-value=0.0049 Score=68.98 Aligned_cols=84 Identities=19% Similarity=0.227 Sum_probs=46.5
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHH-cC---CcccCCccccCCcceeee---ecCCccchhhcccchHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQ-VG---ADVPAEIFEISPVDRIFV---RMGAKDHIMAGQSTFLTELSETAL 1099 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQ-iG---~fVPA~~a~l~i~DrIfT---RIGa~D~i~~g~STFmvEM~Eta~ 1099 (1162)
.++++|+|||++||||+++.+|.. ++. -| ++|.++..+....+.+-. ++|..... ..+ ..+ +..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~--l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~--~~~--~~~---l~~ 175 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAI--SMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEV--CYT--KEE---FQQ 175 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCB--CSS--HHH---HHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEe--cCC--HHH---HHH
Confidence 468999999999999999988743 453 57 455655433222221110 11110000 000 112 233
Q ss_pred HHhcCCCCcEEEEcCCCCCC
Q 001077 1100 MLSSATRNSLVVLDELGRGT 1119 (1162)
Q Consensus 1100 IL~~AT~~SLVIlDELGRGT 1119 (1162)
.|..+....+||||.-|+..
T Consensus 176 al~~~~~~dlvIiDT~G~~~ 195 (296)
T 2px0_A 176 AKELFSEYDHVFVDTAGRNF 195 (296)
T ss_dssp HHHHGGGSSEEEEECCCCCT
T ss_pred HHHHhcCCCEEEEeCCCCCh
Confidence 34445667899999777653
No 120
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=95.34 E-value=0.02 Score=50.67 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=41.5
Q ss_pred ccccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEc-cCCchhhcccC
Q 001077 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLG 150 (1162)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~l~l~ 150 (1162)
..-+|..|...|..|+.||.|+|++.+...+...|.| |=|..|.+.++
T Consensus 17 ~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~ 65 (77)
T 3pnw_C 17 MWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLS 65 (77)
T ss_dssp TCCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGG
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHH
Confidence 3458999999999999999999999998888899999 55888877654
No 121
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.30 E-value=0.014 Score=67.03 Aligned_cols=86 Identities=19% Similarity=0.059 Sum_probs=44.4
Q ss_pred eEEEEccCCCChhHHHHHHHHHHHHHHc-CC---cccCCccc--cCCcceeeeecCCccchhhcccchHHHHHHHHHHHh
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVILAQV-GA---DVPAEIFE--ISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLS 1102 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQi-G~---fVPA~~a~--l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~ 1102 (1162)
.++|+||++.||||+++.++-. +..- |. +|.|.... ..++..|+..+|..-. ..|.+ ...=+..+...+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~-~~~~~~~l~~~l~ 121 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFP-RRGLS-RDEFLALLVEHLR 121 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCC-SSCCC-HHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCC-CCCCC-HHHHHHHHHHHHh
Confidence 7999999999999999987732 2111 21 22322111 1122222222222100 01111 1111223444555
Q ss_pred cCCCCcEEEEcCCCCC
Q 001077 1103 SATRNSLVVLDELGRG 1118 (1162)
Q Consensus 1103 ~AT~~SLVIlDELGRG 1118 (1162)
......+|+|||+...
T Consensus 122 ~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 122 ERDLYMFLVLDDAFNL 137 (389)
T ss_dssp HTTCCEEEEEETGGGS
T ss_pred hcCCeEEEEEECcccc
Confidence 5666789999999887
No 122
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.23 E-value=0.0089 Score=61.55 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.2
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
+.+++|+|||++||||++|.++
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999986
No 123
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.18 E-value=0.0097 Score=60.90 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.9
Q ss_pred eEEEEccCCCChhHHHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
+.+|+|||++||||+|+.++.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999988653
No 124
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=95.17 E-value=0.022 Score=50.60 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=41.5
Q ss_pred ccccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEccC-CchhhcccC
Q 001077 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDD-GEDELLDLG 150 (1162)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Ydd-g~~e~l~l~ 150 (1162)
..-+|..|...|..|+.||.++|++.+...+...|.|-| |..|.|.+.
T Consensus 9 ~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~ 57 (78)
T 2d9t_A 9 VWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLS 57 (78)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGG
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHH
Confidence 345899999999999999999999999877889999954 998877654
No 125
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.14 E-value=0.0069 Score=64.79 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=16.1
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
+.+++|+|||++||||++|.++
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999876
No 126
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.12 E-value=0.019 Score=65.11 Aligned_cols=64 Identities=23% Similarity=0.368 Sum_probs=40.4
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCCCC
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRN 1107 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~ 1107 (1162)
..++|+||||+||||++|.+|- .+||.++..++.+- ..+ .++..++.....+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~-----~l~~~~~~~sg~~~---------------~~~--------~~l~~~~~~~~~~ 103 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIAS-----ELQTNIHVTSGPVL---------------VKQ--------GDMAAILTSLERG 103 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH-----HHTCCEEEEETTTC---------------CSH--------HHHHHHHHHCCTT
T ss_pred CeEEEECCCCCcHHHHHHHHHH-----HhCCCEEEEechHh---------------cCH--------HHHHHHHHHccCC
Confidence 4689999999999999999874 34654332211110 001 1233445555567
Q ss_pred cEEEEcCCCCCC
Q 001077 1108 SLVVLDELGRGT 1119 (1162)
Q Consensus 1108 SLVIlDELGRGT 1119 (1162)
.+++|||+-+=.
T Consensus 104 ~v~~iDE~~~l~ 115 (334)
T 1in4_A 104 DVLFIDEIHRLN 115 (334)
T ss_dssp CEEEEETGGGCC
T ss_pred CEEEEcchhhcC
Confidence 899999987644
No 127
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.07 E-value=0.0094 Score=63.42 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.6
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
+.+++|.|||++||||++|.++=
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999874
No 128
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.03 E-value=0.02 Score=67.89 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=25.2
Q ss_pred CcceEEEEccCCCChhHHHHHHHHHHHHH
Q 001077 1026 NASFILLTGPNMGGKSTLLRQVCLAVILA 1054 (1162)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivILA 1054 (1162)
...+++|+||++.|||||+.++|..+...
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~ 230 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK 230 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 34689999999999999999999877654
No 129
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.00 E-value=0.011 Score=62.04 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.8
Q ss_pred cceEEEEccCCCChhHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1162)
..++.|+|||++||||++|.++-.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999987643
No 130
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.98 E-value=0.018 Score=65.59 Aligned_cols=90 Identities=13% Similarity=0.158 Sum_probs=47.3
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHc--CC---cccCCccc--cCCcceeeeecCCccchhhcccchHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQV--GA---DVPAEIFE--ISPVDRIFVRMGAKDHIMAGQSTFLTELSETAL 1099 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQi--G~---fVPA~~a~--l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~ 1099 (1162)
.+.++|+||++.||||++|.++-.. -.+. |+ ||.|.... ..++..|+..+|..-. ..|.+ +..-+..+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~-~~~~~~~l~~ 121 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKL-HKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVP-FTGLS-IAELYRRLVK 121 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHH-HHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCC-SSSCC-HHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-HHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCC-CCCCC-HHHHHHHHHH
Confidence 4679999999999999999877432 1222 22 23322110 0112222222222110 01111 1111344555
Q ss_pred HHhcCCCCcEEEEcCCCCCC
Q 001077 1100 MLSSATRNSLVVLDELGRGT 1119 (1162)
Q Consensus 1100 IL~~AT~~SLVIlDELGRGT 1119 (1162)
.+.....+.+|+|||+....
T Consensus 122 ~l~~~~~~~vlilDE~~~l~ 141 (386)
T 2qby_A 122 AVRDYGSQVVIVLDEIDAFV 141 (386)
T ss_dssp HHHTCCSCEEEEEETHHHHH
T ss_pred HHhccCCeEEEEEcChhhhh
Confidence 66666668899999997643
No 131
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.96 E-value=0.011 Score=60.97 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.4
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
.+++|+|||++||||++|.++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHh
Confidence 478999999999999999986
No 132
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.94 E-value=0.012 Score=62.95 Aligned_cols=22 Identities=23% Similarity=0.566 Sum_probs=19.9
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
+.+++|.|||++||||++|.++
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~ 37 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALL 37 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999865
No 133
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.90 E-value=0.011 Score=61.97 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=19.8
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
.++++|.|||++||||++|.++=
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999998753
No 134
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.81 E-value=0.013 Score=61.21 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.7
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
..+++|+|||++||||++|.++-
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999863
No 135
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.81 E-value=0.013 Score=60.79 Aligned_cols=81 Identities=19% Similarity=0.094 Sum_probs=41.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcCC--cccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCC
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGA--DVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSAT 1105 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~--fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT 1105 (1162)
++.+||||.++||||+|.+++.-..-+..-. +-|+..-+.+ .+.|.+|+|-.-.- ...+ ....++..+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~-~~~i~s~~g~~~~~-~~~~-------~~~~~~~~~~ 74 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYH-STMIVSHSGNGVEA-HVIE-------RPEEMRKYIE 74 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----C-CCEECC----CEEC-EEES-------SGGGGGGGCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccC-cccEEecCCCceee-EEEC-------CHHHHHHHhc
Confidence 5899999999999999987775544332111 2244322222 23555665532110 0011 1123344333
Q ss_pred -CCcEEEEcCCCC
Q 001077 1106 -RNSLVVLDELGR 1117 (1162)
Q Consensus 1106 -~~SLVIlDELGR 1117 (1162)
...+|+|||+.+
T Consensus 75 ~~~dvviIDE~Q~ 87 (184)
T 2orw_A 75 EDTRGVFIDEVQF 87 (184)
T ss_dssp TTEEEEEECCGGG
T ss_pred CCCCEEEEECccc
Confidence 467999999987
No 136
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.76 E-value=0.014 Score=61.33 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.0
Q ss_pred cceEEEEccCCCChhHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1162)
..++.|.|||++||||++|.++-.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988643
No 137
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.74 E-value=0.057 Score=61.90 Aligned_cols=103 Identities=25% Similarity=0.292 Sum_probs=56.1
Q ss_pred ccccceecC--CCCCcceEEEEccCCCChhHHHHHHHHHHHHHH-cCCcccCCccccCCccee-eeecCCc-cchhhccc
Q 001077 1014 FVPNDITIG--GHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ-VGADVPAEIFEISPVDRI-FVRMGAK-DHIMAGQS 1088 (1162)
Q Consensus 1014 fVPNDi~l~--~~~~~~~~IITGPNMgGKST~LRqvaLivILAQ-iG~fVPA~~a~l~i~DrI-fTRIGa~-D~i~~g~S 1088 (1162)
+-.-|-.|+ +-...++++|+||+++||||+..+++..+.... -..||-++.+ +|.+ ..++|.. +++.--..
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s----~~~~~a~~~g~~~~~l~i~~~ 123 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA----LDPIYARKLGVDIDNLLCSQP 123 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC----CCHHHHHHTTCCGGGCEEECC
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC----ccHHHHHHcCCChhheeeeCC
Confidence 334444454 222357899999999999999999887664321 1235555432 1111 2233321 22211111
Q ss_pred chHHHHHHHHHHHhcCCCCcEEEEcCCCCCCC
Q 001077 1089 TFLTELSETALMLSSATRNSLVVLDELGRGTS 1120 (1162)
Q Consensus 1089 TFmvEM~Eta~IL~~AT~~SLVIlDELGRGTs 1120 (1162)
+-..++.++..-|.....-.|||||.++.=..
T Consensus 124 ~~~e~~~~~~~~l~~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 124 DTGEQALEICDALARSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp SSHHHHHHHHHHHHHHTCCSEEEEECGGGCCC
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEcCHHHhcc
Confidence 11234444444443345677999999987664
No 138
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.73 E-value=0.013 Score=65.77 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=23.9
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcC
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG 1057 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG 1057 (1162)
.++++|+|||++||||+++.+|-. +++-|
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~--l~~~g 132 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKM--FVDEG 132 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH--HHHTT
T ss_pred CeEEEEEcCCCChHHHHHHHHHHH--HHhcC
Confidence 568999999999999999998843 45555
No 139
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.70 E-value=0.019 Score=57.44 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.4
Q ss_pred ceEEEEccCCCChhHHHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
.+.+|+|||++||||+|..++.+.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999998744
No 140
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.68 E-value=0.12 Score=58.14 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=25.5
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccC
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPA 1062 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA 1062 (1162)
.++++|+||.+.||||+..|+|.. ...-..||-+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~--~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA--LGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH--HHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh--CCCCEEEEEe
Confidence 467899999999999999999875 2122246555
No 141
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.59 E-value=0.015 Score=58.81 Aligned_cols=21 Identities=48% Similarity=0.608 Sum_probs=19.1
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
.+++|||||++||||++|.++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La 25 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLA 25 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999876
No 142
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.55 E-value=0.017 Score=59.37 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=19.9
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
.++++|+|||++||||+++.++
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~ 26 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLI 26 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999975
No 143
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=94.44 E-value=0.054 Score=44.33 Aligned_cols=44 Identities=23% Similarity=0.319 Sum_probs=39.2
Q ss_pred cCceEEEeccCCCeEEeEEEEeecCCCCeEEEEccCCchhhcccC
Q 001077 106 LRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (1162)
Q Consensus 106 vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~ 150 (1162)
+|..|-+.|-+ ..||.|+|+..|....+..|+++||.+-|+.+.
T Consensus 6 ~GedVLarwsD-G~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~k 49 (58)
T 4hcz_A 6 EGQDVLARWTD-GLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWK 49 (58)
T ss_dssp TTCEEEEECTT-SCEEEEEEEEEETTTTEEEEEETTSCEEEEEGG
T ss_pred cCCEEEEEecC-CCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhH
Confidence 68889999975 899999999999999999999999998876543
No 144
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.44 E-value=0.043 Score=58.73 Aligned_cols=107 Identities=19% Similarity=0.138 Sum_probs=60.0
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCc--ccCCccccCCcceeeeecCCc-cchhhcccchHHHHHHHHHHHhc
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD--VPAEIFEISPVDRIFVRMGAK-DHIMAGQSTFLTELSETALMLSS 1103 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~f--VPA~~a~l~i~DrIfTRIGa~-D~i~~g~STFmvEM~Eta~IL~~ 1103 (1162)
..+.+||||-++||||.|.+.+.-..-+..=+. =|+...+ + ...|.+|+|-. +.+. ..+. .++-..+..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r-~-~~~i~srlG~~~~~~~--~~~~----~~i~~~i~~ 83 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-S-IRNIQSRTGTSLPSVE--VESA----PEILNYIMS 83 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-G-CSSCCCCCCCSSCCEE--ESST----HHHHHHHHS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch-H-HHHHHHhcCCCccccc--cCCH----HHHHHHHHH
Confidence 468999999999999999988766543322122 2454444 3 24678888743 1111 1111 223333333
Q ss_pred C---CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEeh
Q 001077 1104 A---TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTL 1146 (1162)
Q Consensus 1104 A---T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th 1146 (1162)
. ....+|||||+--=+ .+ +-..+..+....-.++++-|
T Consensus 84 ~~~~~~~dvViIDEaQ~l~--~~---~ve~l~~L~~~gi~Vil~Gl 124 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFD--DR---ICEVANILAENGFVVIISGL 124 (223)
T ss_dssp TTSCTTCCEEEECSGGGSC--TH---HHHHHHHHHHTTCEEEEECC
T ss_pred HhhCCCCCEEEEecCccCc--HH---HHHHHHHHHhCCCeEEEEec
Confidence 2 346899999995311 11 22233334444566777777
No 145
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.40 E-value=0.079 Score=60.38 Aligned_cols=24 Identities=33% Similarity=0.274 Sum_probs=21.0
Q ss_pred cceEEEEccCCCChhHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1162)
.+.++|+||.+.||||+++.++-.
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998743
No 146
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.39 E-value=0.074 Score=53.64 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=20.5
Q ss_pred cceEEEEccCCCChhHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1162)
.+.++|+||-+.||||+++.++-.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988754
No 147
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.36 E-value=0.024 Score=63.66 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=21.3
Q ss_pred cceEEEEccCCCChhHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1162)
+.++.|.|||++||||+++.+|-.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 568999999999999999998844
No 148
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.29 E-value=0.033 Score=67.28 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=22.1
Q ss_pred cceEEEEccCCCChhHHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
..+++|+|||++||||++++++-..
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998653
No 149
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.17 E-value=0.11 Score=59.86 Aligned_cols=101 Identities=23% Similarity=0.285 Sum_probs=55.3
Q ss_pred ccccceecC--CCCCcceEEEEccCCCChhHHHHHHHHHHHHHH-cCCcccCCccccCCccee-eeecCCc-cchhhc-c
Q 001077 1014 FVPNDITIG--GHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ-VGADVPAEIFEISPVDRI-FVRMGAK-DHIMAG-Q 1087 (1162)
Q Consensus 1014 fVPNDi~l~--~~~~~~~~IITGPNMgGKST~LRqvaLivILAQ-iG~fVPA~~a~l~i~DrI-fTRIGa~-D~i~~g-~ 1087 (1162)
+-.-|..|+ +-...++++|+||.++|||||..+++..+.... -..||-++.. ++.+ ..++|.. +++.-- -
T Consensus 59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s----~~~~~a~~~g~d~~~l~i~~~ 134 (366)
T 1xp8_A 59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA----LDPVYARALGVNTDELLVSQP 134 (366)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC----CCHHHHHHTTCCGGGCEEECC
T ss_pred CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCC----hhHHHHHHcCCCHHHceeecC
Confidence 344455554 222356899999999999999999987654321 1245555532 1111 2233322 211110 1
Q ss_pred cchHHHHHHHHHHHhcCCCCcEEEEcCCCCCC
Q 001077 1088 STFLTELSETALMLSSATRNSLVVLDELGRGT 1119 (1162)
Q Consensus 1088 STFmvEM~Eta~IL~~AT~~SLVIlDELGRGT 1119 (1162)
.|+ .++.+...-|.....-.|||||.|+.=.
T Consensus 135 ~~~-e~~l~~l~~l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 135 DNG-EQALEIMELLVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp SSH-HHHHHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred CcH-HHHHHHHHHHHhcCCCCEEEEeChHHhc
Confidence 122 3444444444444567899999998644
No 150
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.16 E-value=0.034 Score=58.42 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=22.3
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVI 1052 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivI 1052 (1162)
.+.+|+|||++||||+|..++++..
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999887655
No 151
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.16 E-value=0.023 Score=59.05 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.9
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
+.+++|+|||++||||++|.++
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~ 27 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIF 27 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999876
No 152
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.08 E-value=0.071 Score=53.75 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=20.5
Q ss_pred cceEEEEccCCCChhHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1162)
.+.++|+||-+.||||+++.++-.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988654
No 153
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.01 E-value=0.026 Score=59.36 Aligned_cols=22 Identities=36% Similarity=0.532 Sum_probs=20.0
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
+++++|+|||++||||+++.++
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~ 29 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVF 29 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHH
Confidence 4689999999999999999875
No 154
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.01 E-value=0.025 Score=57.33 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.3
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
..+++|+|||++||||++|.++-
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999998764
No 155
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.99 E-value=0.025 Score=61.11 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=20.1
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
..+++|.|||++||||++|.++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999987
No 156
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.81 E-value=0.032 Score=62.81 Aligned_cols=24 Identities=29% Similarity=0.189 Sum_probs=21.0
Q ss_pred cceEEEEccCCCChhHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1162)
+.++.|.|||++||||++|.++-+
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhh
Confidence 468999999999999999987744
No 157
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.72 E-value=0.099 Score=57.31 Aligned_cols=23 Identities=39% Similarity=0.463 Sum_probs=20.0
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
.+.++|+||.|.||||++|.+|-
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 34699999999999999999863
No 158
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.70 E-value=0.097 Score=58.73 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.4
Q ss_pred ceEEEEccCCCChhHHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1162)
+.++|+||.|.||||++|.++-.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999998854
No 159
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.70 E-value=0.027 Score=68.02 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=27.2
Q ss_pred cceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHH
Q 001077 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA 1054 (1162)
Q Consensus 1017 NDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILA 1054 (1162)
+|+.+|+-....+++|.|||++||||+++++++.-++.
T Consensus 29 d~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 29 DDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp HHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 45555322235789999999999999999976544443
No 160
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.69 E-value=0.033 Score=58.03 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=21.8
Q ss_pred cceEEEEccCCCChhHHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
+.+++|+|||++||||++|.++-..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999987543
No 161
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.65 E-value=0.042 Score=57.66 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.9
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1162)
+.++|+||.+.||||+++.++-
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998874
No 162
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.61 E-value=0.028 Score=63.42 Aligned_cols=22 Identities=45% Similarity=0.552 Sum_probs=19.8
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
..+++|||||++||||+||.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~ 25 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHIL 25 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHH
Confidence 3589999999999999999876
No 163
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.58 E-value=0.051 Score=63.84 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=24.8
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCc
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~f 1059 (1162)
+++++|+|||++||||++..+|. .++.-|.-
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~--~l~~~G~k 127 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAY--FYKKRGYK 127 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHH--HHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHcCCe
Confidence 56899999999999999988874 45666643
No 164
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.54 E-value=0.15 Score=56.75 Aligned_cols=24 Identities=21% Similarity=0.054 Sum_probs=21.1
Q ss_pred cceEEEEccCCCChhHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1162)
++.++|+||.|.|||++.|.+|-.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998843
No 165
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.53 E-value=0.024 Score=64.66 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=27.6
Q ss_pred cceecC-CCCCcceEEEEccCCCChhHHHHHHHHHHHH
Q 001077 1017 NDITIG-GHGNASFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1162)
Q Consensus 1017 NDi~l~-~~~~~~~~IITGPNMgGKST~LRqvaLivIL 1053 (1162)
-|-.|+ +-...++++|+||+++||||++.++|..+.+
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~ 148 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQL 148 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTS
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 344453 2223578999999999999999999976544
No 166
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.41 E-value=0.037 Score=62.13 Aligned_cols=23 Identities=30% Similarity=0.276 Sum_probs=20.2
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
..++.|+|||++||||++|.++-
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998764
No 167
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.38 E-value=0.033 Score=62.49 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=29.8
Q ss_pred cceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcC---CcccCC
Q 001077 1017 NDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG---ADVPAE 1063 (1162)
Q Consensus 1017 NDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG---~fVPA~ 1063 (1162)
+++.+.-. ...++.|.|||++||||++|.++=+. -| +|||-.
T Consensus 117 ~~vsl~i~-~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~~~v~q~ 161 (305)
T 2v9p_A 117 KLWLKGIP-KKNCLAFIGPPNTGKSMLCNSLIHFL----GGSVLSFANHK 161 (305)
T ss_dssp HHHHHTCT-TCSEEEEECSSSSSHHHHHHHHHHHH----TCEEECGGGTT
T ss_pred ccceEEec-CCCEEEEECCCCCcHHHHHHHHhhhc----CceEEEEecCc
Confidence 34445432 35689999999999999999987554 34 466654
No 168
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.31 E-value=0.033 Score=62.61 Aligned_cols=25 Identities=28% Similarity=0.175 Sum_probs=20.8
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVI 1052 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivI 1052 (1162)
+.++|+||.|.|||++++.+|-...
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999998776443
No 169
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.22 E-value=0.79 Score=61.41 Aligned_cols=58 Identities=12% Similarity=0.076 Sum_probs=38.3
Q ss_pred cEEEeeccCCccccccCCCCcccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCC
Q 001077 993 YISAKSLGHPVLRSDSLGKGEFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE 1063 (1162)
Q Consensus 993 ~l~i~~~RHP~le~~~~~~~~fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~ 1063 (1162)
.|++++...-.-. ..+.+|=+|+.+.-. .+..+.|.||+++||||+++.+. |.|-|-+
T Consensus 415 ~I~~~nvsF~Y~~----~~~~~vL~~isl~i~-~G~~vaivG~sGsGKSTll~ll~--------~~~~~~~ 472 (1321)
T 4f4c_A 415 DITVENVHFTYPS----RPDVPILRGMNLRVN-AGQTVALVGSSGCGKSTIISLLL--------RYYDVLK 472 (1321)
T ss_dssp CEEEEEEEECCSS----STTSCSEEEEEEEEC-TTCEEEEEECSSSCHHHHHHHHT--------TSSCCSE
T ss_pred cEEEEEeeeeCCC----CCCCceeeceEEeec-CCcEEEEEecCCCcHHHHHHHhc--------ccccccc
Confidence 4677665422110 112466677777532 34689999999999999999876 7776654
No 170
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.16 E-value=0.041 Score=57.22 Aligned_cols=21 Identities=38% Similarity=0.176 Sum_probs=18.8
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaL 1049 (1162)
.++|||||++||||++|.++-
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 588999999999999998763
No 171
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=93.11 E-value=0.12 Score=69.07 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=25.9
Q ss_pred ccccceecCCCCCcceEEEEccCCCChhHHHHHHH
Q 001077 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1014 fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1162)
.|=+|+.+.-. .+.++.|.|||++||||+++.++
T Consensus 404 ~vL~~isl~i~-~G~~~~ivG~sGsGKSTl~~ll~ 437 (1284)
T 3g5u_A 404 QILKGLNLKVK-SGQTVALVGNSGCGKSTTVQLMQ 437 (1284)
T ss_dssp CSEEEEEEEEC-TTCEEEEECCSSSSHHHHHHHTT
T ss_pred cceecceEEEc-CCCEEEEECCCCCCHHHHHHHHh
Confidence 34456666432 34689999999999999999886
No 172
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.11 E-value=0.039 Score=64.66 Aligned_cols=22 Identities=45% Similarity=0.529 Sum_probs=19.8
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
..+++|+|||++||||+|+.++
T Consensus 167 ggii~I~GpnGSGKTTlL~all 188 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGL 188 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999875
No 173
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.01 E-value=0.14 Score=56.62 Aligned_cols=23 Identities=43% Similarity=0.522 Sum_probs=20.1
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
.+.++|+||+|.||||++|.++-
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 35699999999999999998873
No 174
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.01 E-value=0.045 Score=57.12 Aligned_cols=21 Identities=29% Similarity=0.240 Sum_probs=18.7
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaL 1049 (1162)
++.|||||++||||+.|.++-
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998763
No 175
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=92.91 E-value=0.11 Score=47.54 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=39.2
Q ss_pred ccccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEc-cCCchhhcccC
Q 001077 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLG 150 (1162)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~l~l~ 150 (1162)
..-+|.-|-+.|+.|+.||.|.|.+... .+...|.| |=|..|.+.++
T Consensus 27 ~~~~G~~c~a~~~~d~~wyRA~I~~~~~-~~~~~V~fvDyGn~e~v~~~ 74 (94)
T 3fdr_A 27 TVHVGDIVAAPLPTNGSWYRARVLGTLE-NGNLDLYFVDFGDNGDCPLK 74 (94)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECT-TSCEEEEETTTCCEEEECGG
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECC-CCeEEEEEEcCCCeEEEEHH
Confidence 3458999999999999999999999974 45678888 88998877654
No 176
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=92.89 E-value=0.22 Score=42.09 Aligned_cols=44 Identities=14% Similarity=0.314 Sum_probs=36.2
Q ss_pred cccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEccCCchhhcccC
Q 001077 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (1162)
Q Consensus 104 ~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~ 150 (1162)
--+|..|=+.|-+ ..||-|+|++ ....+..|+++|..+-|+.+.
T Consensus 16 ~~~geDVL~rw~D-G~fYLGtIVd--~~~~~ClV~FeD~S~~Wv~~k 59 (69)
T 2xk0_A 16 YALQEDVFIKCND-GRFYLGTIID--QTSDQYLIRFDDQSEQWCEPD 59 (69)
T ss_dssp CCTTCEEEEECTT-SCEEEEEEEE--ECSSCEEEEETTCCEEEECTT
T ss_pred cccCCeEEEEecC-CCEEEEEEEe--cCCceEEEEecCCcceeeeHH
Confidence 3478888899975 8999999965 667889999999998877654
No 177
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=92.73 E-value=0.084 Score=70.53 Aligned_cols=44 Identities=9% Similarity=0.080 Sum_probs=33.1
Q ss_pred CCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1106 RNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1106 ~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
...++||||--+|=++.--..|-.++.++. ...+++++||-...
T Consensus 1189 ~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~~ 1232 (1284)
T 3g5u_A 1189 QPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLST 1232 (1284)
T ss_dssp CCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTTG
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHHH
Confidence 567999999998888876666666665543 35689999998743
No 178
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.71 E-value=0.075 Score=56.87 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=21.9
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILA 1054 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILA 1054 (1162)
+.++|.||+++||||++++..+-.++.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~ 103 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQ 103 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhh
Confidence 468999999999999999876655443
No 179
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.62 E-value=0.065 Score=63.73 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=20.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1162)
.++.|.|||++||||+||.++-+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 68999999999999999988843
No 180
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.59 E-value=0.061 Score=56.13 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.3
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
..++.|+|||++||||+++.++-
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998763
No 181
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.54 E-value=0.35 Score=57.52 Aligned_cols=22 Identities=45% Similarity=0.492 Sum_probs=19.6
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1162)
+-++|+||++.||||++|.+|-
T Consensus 50 ~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3489999999999999999874
No 182
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.51 E-value=0.1 Score=58.23 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=24.6
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCc
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~f 1059 (1162)
.+++.|+|||++||||+++.+|. .+++-|.-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~--~~~~~~~~ 128 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL--YYKGKGRR 128 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH--HHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHcCCe
Confidence 45788899999999999999884 45666643
No 183
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.46 E-value=0.062 Score=55.88 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=20.7
Q ss_pred cccccceecCCCCCcceEEEEccCCCChhHHHHHHH
Q 001077 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1013 ~fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1162)
.+.=+|+.+.-. ..++++|+||+++||||+.|.++
T Consensus 12 ~~~~~~~~~~~~-~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 12 DLGTENLYFQSN-AMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCCceeEecC-CCCEEEEEcCCCCCHHHHHHHHH
Confidence 466667777532 34689999999999999999987
No 184
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.34 E-value=0.044 Score=61.89 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=23.6
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivIL 1053 (1162)
.++++|+||+++||||++.|+|..+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~ 133 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQL 133 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhc
Confidence 468999999999999999999976544
No 185
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.28 E-value=0.12 Score=58.22 Aligned_cols=64 Identities=22% Similarity=0.379 Sum_probs=42.3
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCCCC
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRN 1107 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~ 1107 (1162)
+.++|+||.|.|||+++|.++- +.|+.+..-.+. +. . ...++..++......
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~-----~~~~~~~~~~~~------------~~----~-------~~~~~~~~~~~~~~~ 107 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISY-----EMSANIKTTAAP------------MI----E-------KSGDLAAILTNLSEG 107 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH-----HTTCCEEEEEGG------------GC----C-------SHHHHHHHHHTCCTT
T ss_pred CeEEEECcCCCCHHHHHHHHHH-----HhCCCeEEecch------------hc----c-------chhHHHHHHHhccCC
Confidence 3589999999999999999853 345432111110 00 0 123455667777788
Q ss_pred cEEEEcCCCCCC
Q 001077 1108 SLVVLDELGRGT 1119 (1162)
Q Consensus 1108 SLVIlDELGRGT 1119 (1162)
.+|+|||+++=.
T Consensus 108 ~vl~lDEi~~l~ 119 (338)
T 3pfi_A 108 DILFIDEIHRLS 119 (338)
T ss_dssp CEEEEETGGGCC
T ss_pred CEEEEechhhcC
Confidence 999999999865
No 186
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.28 E-value=0.059 Score=56.05 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.0
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
..+++|+||+++||||+.|.++-
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998763
No 187
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=92.26 E-value=0.076 Score=61.16 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=22.5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVI 1052 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivI 1052 (1162)
.+.+|||||++||||+|-.++++.+
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~~l~ 50 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFFALF 50 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998554
No 188
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.23 E-value=0.065 Score=58.19 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.1
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
..++.|+|||++||||++|.++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999987
No 189
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.13 E-value=0.074 Score=54.15 Aligned_cols=31 Identities=26% Similarity=0.214 Sum_probs=23.6
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCc
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~f 1059 (1162)
+.+++|||++++||||++|.++-. |...|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~--l~~~g~~ 35 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY--LVCHGIP 35 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH--HHHTTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH--HhhCCCc
Confidence 468999999999999999987642 3334643
No 190
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=92.13 E-value=0.1 Score=62.49 Aligned_cols=74 Identities=15% Similarity=0.207 Sum_probs=40.5
Q ss_pred eEEEEccCCCChhHHHHHHHHHHHHHH----cCCc-ccCCccccCCcceeeeecC-Cccch---hhcccchHHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVILAQ----VGAD-VPAEIFEISPVDRIFVRMG-AKDHI---MAGQSTFLTELSETAL 1099 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQ----iG~f-VPA~~a~l~i~DrIfTRIG-a~D~i---~~g~STFmvEM~Eta~ 1099 (1162)
.++|.|++++||||+||.+.+..++.+ +-.+ +-.....+..+..|-..++ --++. ..-..-...||.+=..
T Consensus 169 HlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~~Vvtd~~~a~~~L~~~~~EmerR~~ 248 (512)
T 2ius_A 169 HLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYK 248 (512)
T ss_dssp SEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCBCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccceeecCHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999876655432 1111 1222344555554322111 11222 2233344567776655
Q ss_pred HHh
Q 001077 1100 MLS 1102 (1162)
Q Consensus 1100 IL~ 1102 (1162)
.|.
T Consensus 249 ll~ 251 (512)
T 2ius_A 249 LMS 251 (512)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 191
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.08 E-value=0.073 Score=59.59 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=21.8
Q ss_pred cceEEEEccCCCChhHHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
+.++.|.|||++||||+++.+|-..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999988653
No 192
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.97 E-value=0.085 Score=62.04 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=25.6
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcc
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fV 1060 (1162)
+.+++|+|||++||||++-.+| ..+++-|.-|
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA--~~l~~~G~kV 131 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLA--RYFQKRGYKV 131 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH--HHHHTTTCCE
T ss_pred CeEEEEECcCCCCHHHHHHHHH--HHHHHCCCeE
Confidence 5689999999999999997776 4566777543
No 193
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=91.95 E-value=0.057 Score=68.30 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=18.5
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1162)
..++|.||||+||||+|.++++
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999998777743
No 194
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.95 E-value=0.17 Score=45.09 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=42.6
Q ss_pred cccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEccCCchhhcccC
Q 001077 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (1162)
Q Consensus 104 ~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~ 150 (1162)
.=+|.=|.+..++|+.||.|.|..-++.++-|.+.||=|.+|.+...
T Consensus 22 ~k~g~~vaak~~d~n~WyRakV~~v~~~~~veVl~~DyGn~~~V~~~ 68 (85)
T 2eqk_A 22 WENDMHCAVKIQDKNQWRRGQIIRMVTDTLVEVLLYDVGVELVVNVD 68 (85)
T ss_dssp CCSSCEEEEECSSSCCEEEEEEEEECSSSEEEEECTTTCCEEEEETT
T ss_pred ccCCCEEEEEeCCCCeEEEEEEEEecCCCeEEEEEEccCCEEEEEcc
Confidence 33788899999999999999999999999999999999999988755
No 195
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.87 E-value=0.083 Score=55.37 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=19.7
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
.++++|.||+++||||+++.++
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~ 40 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALL 40 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHH
Confidence 4689999999999999999765
No 196
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.82 E-value=0.069 Score=61.35 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=20.0
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
..+++|+|||++||||+||.++
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~ 196 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALM 196 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999987
No 197
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.80 E-value=0.083 Score=59.41 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=25.3
Q ss_pred CcceEEEEccCCCChhHHHHHHHHHHHHH
Q 001077 1026 NASFILLTGPNMGGKSTLLRQVCLAVILA 1054 (1162)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivILA 1054 (1162)
..++++|+||+++||||++.|+|..+.+.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~ 125 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNP 125 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 35789999999999999999999876665
No 198
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.69 E-value=0.083 Score=55.74 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=19.1
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
.++.||||+++||||++|.++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~ 26 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMA 26 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999886
No 199
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=91.52 E-value=0.51 Score=53.87 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=19.3
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
+.++|+||.+.|||+++|.+|
T Consensus 118 ~~vLl~GppGtGKT~la~aia 138 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIA 138 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999987
No 200
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=91.51 E-value=0.14 Score=62.18 Aligned_cols=24 Identities=25% Similarity=0.510 Sum_probs=21.0
Q ss_pred ceEEEEccCCCChhHHHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
..++|+|||+.||||++|.++-..
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 368999999999999999998554
No 201
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.51 E-value=0.062 Score=57.41 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.5
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
+.++.|.|||++||||++|.++-
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 56899999999999999998764
No 202
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.45 E-value=0.35 Score=52.15 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=19.1
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaL 1049 (1162)
-++|+||++.||||++|.++-
T Consensus 47 ~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 489999999999999998874
No 203
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=91.40 E-value=0.1 Score=59.78 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=21.3
Q ss_pred eEEEEccCCCChhHHHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
+.+|+|||++||||+|+.++.+.
T Consensus 28 ~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHhc
Confidence 89999999999999999998754
No 204
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.37 E-value=0.1 Score=59.73 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=21.9
Q ss_pred cceEEEEccCCCChhHHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
+.++.|.|||++||||+++.+|-..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4689999999999999999988653
No 205
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.28 E-value=0.32 Score=61.82 Aligned_cols=21 Identities=43% Similarity=0.531 Sum_probs=19.3
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
+.++|+|||++||||++|.+|
T Consensus 239 ~~vLL~Gp~GtGKTtLarala 259 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHH
Confidence 469999999999999999986
No 206
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.20 E-value=0.31 Score=57.51 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=19.6
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1162)
+.++|+||.+.||||++|.++-
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 3589999999999999998874
No 207
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=91.17 E-value=0.1 Score=61.26 Aligned_cols=25 Identities=28% Similarity=0.642 Sum_probs=22.2
Q ss_pred cceEEEEccCCCChhHHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
+.+.+|+|||++||||+|+.++.+.
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhh
Confidence 3589999999999999999998764
No 208
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.12 E-value=0.14 Score=54.72 Aligned_cols=105 Identities=17% Similarity=0.128 Sum_probs=54.8
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcc--cCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcC
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV--PAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSA 1104 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fV--PA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~A 1104 (1162)
+.+.++|||=++||||.|-+.+.-...+..-++| |+..-+-+ +.|.+|+|-.=.-. +.+.. .| ++..+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg--~~i~sr~G~~~~a~-~i~~~-~d------i~~~~ 88 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS--SSFCTHDRNTMEAL-PACLL-RD------VAQEA 88 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-------------CEEE-EESSG-GG------GHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch--HHHHhhcCCeeEEE-ecCCH-HH------HHHHh
Confidence 3689999999999999999988877665544433 66555555 67888887541110 11111 11 22223
Q ss_pred CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehh
Q 001077 1105 TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLF 1147 (1162)
Q Consensus 1105 T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~ 1147 (1162)
..-.+|+|||.===+. |-..+-.+......++++-|-
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~ 125 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALD 125 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCS
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecc
Confidence 5678999999654332 333222234455556666555
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.11 E-value=0.096 Score=59.57 Aligned_cols=24 Identities=29% Similarity=0.148 Sum_probs=20.9
Q ss_pred cceEEEEccCCCChhHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1162)
..++.|+|||++||||+|+.++-.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998743
No 210
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.08 E-value=0.12 Score=58.39 Aligned_cols=23 Identities=30% Similarity=0.224 Sum_probs=19.5
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
..++.|+|||++||||++|.++-
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999998653
No 211
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.06 E-value=0.086 Score=60.48 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=24.8
Q ss_pred cccccceecCCCCCcceEEEEccCCCChhHHHHHHHH
Q 001077 1013 EFVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1013 ~fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
.+||-.+.=- -...+.|+|||++||||++|.++=
T Consensus 159 ~~v~~~v~~~---lg~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 159 KFIPKEARPF---FAKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp GGSCTTTGGG---TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred hhCCHHHHHh---hhCeEEEECCCCCCHHHHHHHHHH
Confidence 4676666320 024589999999999999999863
No 212
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.82 E-value=0.86 Score=50.25 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.1
Q ss_pred eEEEEccCCCChhHHHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
-++|+||.|.|||+++|.+|-..
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999887543
No 213
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.80 E-value=0.26 Score=40.76 Aligned_cols=44 Identities=18% Similarity=0.319 Sum_probs=39.6
Q ss_pred cCceEEEeccCCCeEEeEEEEeecCCCCeEEEEccCCchhhcccC
Q 001077 106 LRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (1162)
Q Consensus 106 vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~ 150 (1162)
+|..|=+.|- |..||.|+|+.-|....+..|.+.|+.+-|+...
T Consensus 10 eGqdVLarWs-DGlfYlgtV~kV~~~~~~ClV~FeD~s~~wv~~k 53 (63)
T 2e5q_A 10 EGQYVLCRWT-DGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLWK 53 (63)
T ss_dssp TTCEEEEECT-TSCEEEEEECCCCSTTSEEEEEETTSCEEEEEGG
T ss_pred cCCEEEEEec-CCCEEEEEEEEEecCCCEEEEEEccCceeEEEee
Confidence 8899999996 7889999999999999999999999998877543
No 214
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=90.76 E-value=0.16 Score=47.95 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=41.3
Q ss_pred cccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEc-cCCchhhcccCCceEEEE
Q 001077 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLGKEKIEWV 157 (1162)
Q Consensus 104 ~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~l~l~~e~~~~~ 157 (1162)
.-+|.-|-+.|..|+.||.|.|++.++. +...|.| |=|..|.+.++ +++-+
T Consensus 33 ~~~G~~c~a~~~~d~~wyRA~V~~~~~~-~~~~V~fvDyGn~e~v~~~--~Lr~l 84 (110)
T 2diq_A 33 VHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDNGDCPLK--DLRAL 84 (110)
T ss_dssp CCTTCEEEECCTTTCSCEEEEECCCCSS-SCEEEEETTTCCEEEECGG--GCEEC
T ss_pred CCCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEeCCCeEEEehH--HhhcC
Confidence 3488899999999999999999999874 5678888 88999987754 44444
No 215
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.74 E-value=0.41 Score=51.37 Aligned_cols=22 Identities=36% Similarity=0.403 Sum_probs=19.7
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1162)
+.++|+||.+.|||+++|.+|-
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998874
No 216
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.68 E-value=0.11 Score=57.33 Aligned_cols=20 Identities=40% Similarity=0.595 Sum_probs=18.5
Q ss_pred EEEEccCCCChhHHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaL 1049 (1162)
++|.|||++||||++|.+|-
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 89999999999999998873
No 217
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.59 E-value=0.15 Score=56.80 Aligned_cols=64 Identities=23% Similarity=0.359 Sum_probs=40.6
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhc-CCC
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSS-ATR 1106 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~-AT~ 1106 (1162)
+.++|+||-+.||||++|.++- ++|+.+..-.+ .+-. ...++...+.. ...
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~-----~~~~~~~~~~~------------~~~~-----------~~~~l~~~l~~~~~~ 90 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH-----ELGVNLRVTSG------------PAIE-----------KPGDLAAILANSLEE 90 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH-----HHTCCEEEECT------------TTCC-----------SHHHHHHHHTTTCCT
T ss_pred CcEEEECCCCCCHHHHHHHHHH-----HhCCCEEEEec------------cccC-----------ChHHHHHHHHHhccC
Confidence 4589999999999999999874 33532211000 0000 01234445665 467
Q ss_pred CcEEEEcCCCCCC
Q 001077 1107 NSLVVLDELGRGT 1119 (1162)
Q Consensus 1107 ~SLVIlDELGRGT 1119 (1162)
..+|+|||+++=.
T Consensus 91 ~~~l~lDEi~~l~ 103 (324)
T 1hqc_A 91 GDILFIDEIHRLS 103 (324)
T ss_dssp TCEEEETTTTSCC
T ss_pred CCEEEEECCcccc
Confidence 7899999999765
No 218
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.58 E-value=0.13 Score=53.53 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.6
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
..++.||||+++||||+++.++
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~ 42 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQ 42 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999876
No 219
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.53 E-value=0.12 Score=53.89 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.9
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
.++++|+||+++||||+++.++
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~ 33 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVL 33 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999875
No 220
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.51 E-value=0.098 Score=62.88 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.8
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
.+++|+|||++||||+|+.++
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHG
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999765
No 221
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.48 E-value=0.48 Score=53.29 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.3
Q ss_pred EEEEccCCCChhHHHHHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVCLAVI 1052 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaLivI 1052 (1162)
++|+||+|.||||++|.++-...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999886543
No 222
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.44 E-value=0.31 Score=53.06 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=20.9
Q ss_pred cceEEEEccCCCChhHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1162)
.+.++|+||.|.|||+++|.+|-.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 456899999999999999988754
No 223
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.29 E-value=0.15 Score=59.47 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=18.9
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
++.|.|||++||||+||.++
T Consensus 71 ~valvG~nGaGKSTLln~L~ 90 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLR 90 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 78999999999999999987
No 224
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.25 E-value=0.3 Score=50.83 Aligned_cols=82 Identities=20% Similarity=0.219 Sum_probs=47.3
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcc--cCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcC
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV--PAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSA 1104 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fV--PA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~A 1104 (1162)
.++.++|||=++||||.|-+.+.-..-+..=..| |+..-+.+ ...|.+|+|-.-. ..+.+.. ..|+..+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~-~~~i~s~~g~~~~-a~~~~~~-------~~i~~~~ 78 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYS-KEDVVSHMGEKEQ-AVAIKNS-------REILKYF 78 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC--------CEEECTTSCEEE-CEEESSS-------THHHHHC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccch-HHHHHhhcCCcee-eEeeCCH-------HHHHHHH
Confidence 4799999999999999999888776544332222 44333333 3467778774311 1111222 1344433
Q ss_pred C-CCcEEEEcCCCC
Q 001077 1105 T-RNSLVVLDELGR 1117 (1162)
Q Consensus 1105 T-~~SLVIlDELGR 1117 (1162)
. .-.+|||||...
T Consensus 79 ~~~~dvViIDEaqf 92 (191)
T 1xx6_A 79 EEDTEVIAIDEVQF 92 (191)
T ss_dssp CTTCSEEEECSGGG
T ss_pred hccCCEEEEECCCC
Confidence 3 468999999776
No 225
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.14 E-value=0.12 Score=60.55 Aligned_cols=33 Identities=24% Similarity=0.179 Sum_probs=23.6
Q ss_pred cceecCCCCCcce--EEEEccCCCChhHHHHHHHHH
Q 001077 1017 NDITIGGHGNASF--ILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1017 NDi~l~~~~~~~~--~IITGPNMgGKST~LRqvaLi 1050 (1162)
+++.+.-. .+.+ +.|.|||++||||||+.++-.
T Consensus 31 ~~vsl~i~-~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 31 QLVNKSVS-QGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHSCC--CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCCceEec-CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 34444422 2356 889999999999999998743
No 226
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=90.07 E-value=0.14 Score=55.64 Aligned_cols=20 Identities=30% Similarity=0.595 Sum_probs=18.6
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
+++|+|||++||||+.+++|
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999999886
No 227
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.06 E-value=0.14 Score=52.08 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=19.5
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
+.+++|+||+++||||+.+.++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999876
No 228
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=89.95 E-value=0.15 Score=50.93 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=18.3
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
+++|+||.++||||+.+.++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999865
No 229
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.82 E-value=0.14 Score=59.16 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.9
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
+++++|.|||++||||++|.++-
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999883
No 230
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=89.81 E-value=0.061 Score=57.66 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=20.8
Q ss_pred ceEEEEccCCCChhHHHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
.++.|+|||++||||+|+.++-+.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhccc
Confidence 467899999999999999998653
No 231
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.75 E-value=0.34 Score=64.95 Aligned_cols=41 Identities=17% Similarity=0.142 Sum_probs=29.6
Q ss_pred ccccceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCC
Q 001077 1014 FVPNDITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE 1063 (1162)
Q Consensus 1014 fVPNDi~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~ 1063 (1162)
.|=+|+.+.-. .+..+.|.||+|+||||+++.+. |.|=|.+
T Consensus 1093 ~VL~~isl~I~-~Ge~vaIVG~SGsGKSTL~~lL~--------rl~~p~~ 1133 (1321)
T 4f4c_A 1093 EILKGLSFSVE-PGQTLALVGPSGCGKSTVVALLE--------RFYDTLG 1133 (1321)
T ss_dssp CSEEEEEEEEC-TTCEEEEECSTTSSTTSHHHHHT--------TSSCCSS
T ss_pred ccccceeEEEC-CCCEEEEECCCCChHHHHHHHHh--------cCccCCC
Confidence 34456666432 23578999999999999998776 7776654
No 232
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=89.67 E-value=0.17 Score=50.99 Aligned_cols=22 Identities=36% Similarity=0.357 Sum_probs=19.6
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1162)
.+++|+||.++||||+.+.++-
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999998763
No 233
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=89.60 E-value=0.49 Score=53.21 Aligned_cols=22 Identities=45% Similarity=0.472 Sum_probs=19.9
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1162)
+.++|+||.|.|||+++|.+|-
T Consensus 46 ~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 5699999999999999998874
No 234
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=89.58 E-value=0.17 Score=60.64 Aligned_cols=21 Identities=43% Similarity=0.480 Sum_probs=19.1
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaL 1049 (1162)
-++|+|||+.||||++|.+|-
T Consensus 66 GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999874
No 235
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=89.51 E-value=0.18 Score=51.53 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=24.5
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcc
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fV 1060 (1162)
..+++|+|++++||||+.|.++-. |..-|..|
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~--l~~~~~~~ 44 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADL--LQKEGYRV 44 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH--HHHTTCCE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCeE
Confidence 468999999999999999987643 44445433
No 236
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=89.49 E-value=0.15 Score=54.86 Aligned_cols=20 Identities=45% Similarity=0.590 Sum_probs=18.6
Q ss_pred EEEEccCCCChhHHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaL 1049 (1162)
++|+|||++||||++|.+|-
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998873
No 237
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.48 E-value=0.5 Score=39.69 Aligned_cols=45 Identities=24% Similarity=0.357 Sum_probs=39.9
Q ss_pred ccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEccCCchhhcccC
Q 001077 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGEDELLDLG 150 (1162)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~ 150 (1162)
-+|..|=+.|- |..||.|+|+..|.......|.+.|+.+-|+...
T Consensus 11 ~eGqdVLarWs-DGlfYlGtV~kV~~~~~~ClV~FeD~s~~wv~~k 55 (68)
T 2e5p_A 11 WEGQDVLARWT-DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWK 55 (68)
T ss_dssp CTTCEEEEECT-TSSEEEEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred ccCCEEEEEec-CCcEEEeEEEEEecCCcEEEEEEccCCeeeeeee
Confidence 37889999997 5999999999999999999999999998877543
No 238
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.47 E-value=0.18 Score=53.82 Aligned_cols=112 Identities=14% Similarity=0.100 Sum_probs=59.4
Q ss_pred eEEEEccCCCChhHHHHHHHHHHHHHHcCCccc---CCc----------cccCCcceeeeecCCccchhhcccchHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADVP---AEI----------FEISPVDRIFVRMGAKDHIMAGQSTFLTELS 1095 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~fVP---A~~----------a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~ 1095 (1162)
.+++.|+-+.||||++-.+| .-+++-|.-|- ++. ..+....+.+... +.... ..+.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la--~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~---~~~~~--~e~~---- 76 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAA--HAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEY---RGMTL--EEMD---- 76 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHH--HHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEE---TTEEE--EECC----
T ss_pred EEEEECCCCCcHHHHHHHHH--HHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeec---CCccc--cccc----
Confidence 37899999999999986655 55667786442 211 1111111111100 00000 0011
Q ss_pred HHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccC-ceEEEehhhhccccc
Q 001077 1096 ETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAG-SQFLSTLFIKCNAVD 1154 (1162)
Q Consensus 1096 Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~-~~~~~th~~~~~~~~ 1154 (1162)
+..+|. ....||||||+|.-..+..+.++-|+-.+...-+. .++.++|.--+..|.
T Consensus 77 -l~~~L~--~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~ 133 (228)
T 2r8r_A 77 -LDALLK--AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLN 133 (228)
T ss_dssp -HHHHHH--HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGH
T ss_pred -HHHHHh--cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHH
Confidence 223333 24679999999986566555666666555333333 566666654444433
No 239
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.35 E-value=0.17 Score=57.68 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=20.9
Q ss_pred cceEEEEccCCCChhHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1162)
..++.|.|||++||||+||+++=.
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999998844
No 240
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.03 E-value=0.31 Score=54.95 Aligned_cols=30 Identities=30% Similarity=0.421 Sum_probs=24.9
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCC
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~ 1058 (1162)
.++++|+|||++||||+++.+|. .+++-|-
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~--~l~~~g~ 134 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMAN--YYAELGY 134 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH--HHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHCCC
Confidence 57899999999999999998874 4566664
No 241
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=88.90 E-value=0.19 Score=56.07 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.5
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
.++.|.|||++||||+|+.++
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999987
No 242
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=88.88 E-value=0.19 Score=50.88 Aligned_cols=20 Identities=40% Similarity=0.429 Sum_probs=18.5
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
.++|+||+++||||+.|.++
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 48899999999999999987
No 243
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.84 E-value=0.42 Score=56.30 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=28.1
Q ss_pred ceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHH
Q 001077 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1162)
Q Consensus 1018 Di~l~~~~~~~~~IITGPNMgGKST~LRqvaLivIL 1053 (1162)
|-.+++-....+++|+|+.+.|||||+.++|..+..
T Consensus 191 D~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 191 DQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp HHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred hhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 333444334568999999999999999999988765
No 244
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=88.82 E-value=0.23 Score=49.40 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=21.8
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcCCc
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~f 1059 (1162)
.+++|+||.++||||+.+.+ .+.|+.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L------~~~g~~ 27 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL------KERGAK 27 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH------HHTTCE
T ss_pred cEEEEECCCCCCHHHHHHHH------HHCCCc
Confidence 47899999999999999966 566754
No 245
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.80 E-value=0.25 Score=52.85 Aligned_cols=23 Identities=35% Similarity=0.684 Sum_probs=20.5
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
..+++|+||+++||||+++.++-
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999998863
No 246
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=88.76 E-value=0.56 Score=52.60 Aligned_cols=22 Identities=50% Similarity=0.513 Sum_probs=19.8
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1162)
+.++|+||-|.|||+++|.+|-
T Consensus 52 ~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4699999999999999998874
No 247
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=88.34 E-value=0.77 Score=52.89 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=19.1
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
+-++|+||.|.|||+++|.+|
T Consensus 149 ~~vLL~GppGtGKT~la~aia 169 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVA 169 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999986
No 248
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=88.31 E-value=0.21 Score=54.78 Aligned_cols=20 Identities=45% Similarity=0.590 Sum_probs=18.6
Q ss_pred EEEEccCCCChhHHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaL 1049 (1162)
++|.|||++||||++|.++-
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 88999999999999998874
No 249
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.26 E-value=0.56 Score=53.38 Aligned_cols=24 Identities=17% Similarity=0.074 Sum_probs=21.1
Q ss_pred cceEEEEccCCCChhHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1162)
.+.++|+||.+.||||+++.++-.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998744
No 250
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=88.24 E-value=0.31 Score=47.84 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=17.6
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|+||.+.|||++.|.++
T Consensus 30 vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp EEEEEETTCCHHHHHGGGC
T ss_pred EEEECCCCccHHHHHHHHH
Confidence 8899999999999999876
No 251
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=88.16 E-value=0.27 Score=58.90 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=18.7
Q ss_pred EEEEccCCCChhHHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaL 1049 (1162)
++|+||.|.|||++.|.+|-
T Consensus 44 VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 44 VFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp EEEECCSSSSHHHHHHHGGG
T ss_pred eEeecCchHHHHHHHHHHHH
Confidence 88999999999999999884
No 252
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=88.15 E-value=0.55 Score=53.26 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.4
Q ss_pred ceEEEEccCCCChhHHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1162)
+.++|+||.|.|||+++|.++-.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988743
No 253
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.14 E-value=0.46 Score=53.29 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=24.6
Q ss_pred CcceEEEEccCCCChhHHHHHHHHHHHH
Q 001077 1026 NASFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1162)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivIL 1053 (1162)
...+++|+|+.+.|||||+.|+|..+..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999987654
No 254
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=87.98 E-value=0.25 Score=50.36 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.9
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
+.+++|+||.++||||+.+.++
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999876
No 255
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=87.90 E-value=0.12 Score=50.95 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=17.7
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|+||.|.|||++.|.++
T Consensus 27 vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8899999999999999875
No 256
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.88 E-value=0.24 Score=50.87 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=18.4
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
.++|.|||++||||+++.++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~ 50 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFT 50 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 57899999999999999876
No 257
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=87.85 E-value=0.27 Score=49.60 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=19.3
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
.+++|+||-++||||+.|.++
T Consensus 4 ~~i~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999876
No 258
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=87.75 E-value=0.25 Score=58.16 Aligned_cols=23 Identities=26% Similarity=0.122 Sum_probs=20.5
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
..++.|.|||++||||+|++++=
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag 179 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMAR 179 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999883
No 259
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=87.74 E-value=0.32 Score=49.77 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.4
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
...++||||.++||||+.|.++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La 31 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIA 31 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999765
No 260
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=87.72 E-value=0.45 Score=53.42 Aligned_cols=88 Identities=17% Similarity=0.198 Sum_probs=53.8
Q ss_pred eEEEEccCCCChhHHHHHHHHHHHHHHcC---CcccCCccccCCcceeeeecCCc-cchhhcccchHHHH-HHHHHHHh-
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVG---ADVPAEIFEISPVDRIFVRMGAK-DHIMAGQSTFLTEL-SETALMLS- 1102 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG---~fVPA~~a~l~i~DrIfTRIGa~-D~i~~g~STFmvEM-~Eta~IL~- 1102 (1162)
+.+|.||.++||||++=|++..+.....| .||=++.+--+. -..|+|-. |++.--.-+-..++ .++...|.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~---ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~ 106 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA---YLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDA 106 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH---HHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH---HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHH
Confidence 68999999999999999987665532113 566665432111 13455543 44443333334455 56666652
Q ss_pred -cCCCCcEEEEcCCCCCC
Q 001077 1103 -SATRNSLVVLDELGRGT 1119 (1162)
Q Consensus 1103 -~AT~~SLVIlDELGRGT 1119 (1162)
....-.|||||-+.-=.
T Consensus 107 i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 107 IERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp CCTTCCEEEEEECSTTCB
T ss_pred hhccCceEEEEecccccc
Confidence 33567899999987543
No 261
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=87.62 E-value=0.27 Score=51.43 Aligned_cols=23 Identities=39% Similarity=0.361 Sum_probs=20.3
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
+.+++|+|++++||||+.|.++-
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998763
No 262
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=87.59 E-value=1.2 Score=56.80 Aligned_cols=80 Identities=19% Similarity=0.341 Sum_probs=41.2
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhc---ccchHHHHHHHHHHHhcC
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAG---QSTFLTELSETALMLSSA 1104 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g---~STFmvEM~Eta~IL~~A 1104 (1162)
+-++|+||+|.||||+++.+|-... . -.||..-. +.-+..+... .+..| ...|...+.++-.-+...
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l~--~--~~~p~~l~-----~~~~~~l~~~-~l~~g~~~~g~~~~~l~~~~~~~~~~ 261 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRIV--K--GDVPEGLK-----GKRIVSLQMG-SLLAGAKYRGEFEERLKAVIQEVVQS 261 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHH--H--TCSCTTST-----TCEEEEECC------------CHHHHHHHHHHHHHTT
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHh--c--CCCchhhc-----CCeEEEeehH-HhhccCccchHHHHHHHHHHHHHHhc
Confidence 3478999999999999999886532 2 13443211 1111111111 11111 123444444444444444
Q ss_pred CCCcEEEEcCCCC
Q 001077 1105 TRNSLVVLDELGR 1117 (1162)
Q Consensus 1105 T~~SLVIlDELGR 1117 (1162)
....+++|||+..
T Consensus 262 ~~~~iL~IDEi~~ 274 (854)
T 1qvr_A 262 QGEVILFIDELHT 274 (854)
T ss_dssp CSSEEEEECCC--
T ss_pred CCCeEEEEecHHH
Confidence 5678999999964
No 263
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=87.57 E-value=0.22 Score=53.92 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=19.9
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
+.+++|+||+++||||+.|.++
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~ 53 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQ 53 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999876
No 264
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=87.53 E-value=0.29 Score=54.27 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.8
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
+.+++|+||+++||||+.+.++
T Consensus 33 ~~livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999875
No 265
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=87.47 E-value=0.28 Score=51.49 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=19.4
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
..+++|||+.++||||+.+.++
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999998875
No 266
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.39 E-value=0.27 Score=50.68 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=18.3
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
-++|.|||++||||+|+.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~ 26 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFT 26 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 37899999999999999986
No 267
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.16 E-value=2.4 Score=49.60 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=23.3
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCc
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~f 1059 (1162)
++-++|.||-|.|||++.|.+| .++|+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA-----~~~~~~ 233 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVA-----NSTKAA 233 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHH-----HHHTCE
T ss_pred CceEEEECCCCCCHHHHHHHHH-----HHhCCC
Confidence 4569999999999999999988 455643
No 268
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=87.07 E-value=0.28 Score=53.33 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=19.9
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
..+++|+||+++||||+.|.++
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999887
No 269
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=87.01 E-value=0.32 Score=49.45 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=19.6
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1162)
.+++|+||.++||||+.|.++-
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998763
No 270
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=86.97 E-value=0.21 Score=60.45 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.2
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
..+++|+|||++||||++|.++-
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHH
Confidence 35799999999999999998763
No 271
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=86.94 E-value=0.47 Score=50.23 Aligned_cols=106 Identities=18% Similarity=0.113 Sum_probs=52.6
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcc--cCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcC
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV--PAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSA 1104 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fV--PA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~A 1104 (1162)
..+.++|||=++||||.|-+.+.-..-+..=++| |+..-+-+ -+.|.+|+|-.=.. .+.+.. ..++..+
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~g-e~~i~s~~g~~~~a-~~~~~~-------~~~~~~~ 98 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYS-EEDVVSHNGLKVKA-VPVSAS-------KDIFKHI 98 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCE-EECSSG-------GGGGGGC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcch-HHHHHhhcCCeeEE-eecCCH-------HHHHHHH
Confidence 5789999999999999999998887766554443 44332222 23466676543110 011111 1444444
Q ss_pred C-CCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEeh
Q 001077 1105 T-RNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTL 1146 (1162)
Q Consensus 1105 T-~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th 1146 (1162)
. +-.+|+|||.=-=+ .| +-..+..+......++++-+
T Consensus 99 ~~~~dvViIDEaQF~~--~~---~V~~l~~l~~~~~~Vi~~Gl 136 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFD--GD---IVEVVQVLANRGYRVIVAGL 136 (214)
T ss_dssp CSSCCEEEECCGGGSC--TT---HHHHHHHHHHTTCEEEEEEC
T ss_pred hcCCCEEEEECcccCC--HH---HHHHHHHHhhCCCEEEEEec
Confidence 3 46899999976511 11 11333333334445666655
No 272
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=86.92 E-value=0.25 Score=55.11 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=19.5
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
.++.|.|||++||||+||.++
T Consensus 170 eiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHS
T ss_pred CeEEEECCCCCcHHHHHHHhc
Confidence 478999999999999999997
No 273
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=86.84 E-value=0.5 Score=53.52 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.0
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
.+.++|+||.|.||||++|.++-
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998863
No 274
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=86.81 E-value=0.23 Score=52.29 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=18.7
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1162)
+.++|.||.+.||||+...+|=
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999866653
No 275
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=86.76 E-value=0.27 Score=49.70 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=15.4
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
..+++|+|+.++||||+.|.++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999875
No 276
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=86.75 E-value=0.99 Score=50.30 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.9
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
.++++++||.+.||||+++.+|
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la 69 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALC 69 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHHHHH
Confidence 4688999999999999999986
No 277
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.73 E-value=2.4 Score=49.69 Aligned_cols=28 Identities=39% Similarity=0.584 Sum_probs=23.5
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCc
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~f 1059 (1162)
++-+||.||-|.|||++.|.+| .++|+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA-----~e~~~~ 242 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVA-----ATIGAN 242 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHH-----HHHTCE
T ss_pred CCeEEEECCCCCcHHHHHHHHH-----HHhCCC
Confidence 4569999999999999999988 566654
No 278
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=86.71 E-value=0.75 Score=47.23 Aligned_cols=22 Identities=23% Similarity=0.387 Sum_probs=19.5
Q ss_pred eEEEEccCCCChhHHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLi 1050 (1162)
.++|+||-+.||||+++.++-.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988743
No 279
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=86.60 E-value=0.32 Score=55.64 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=19.4
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
.+++|.|||++||||+|+.++
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHh
Confidence 478999999999999999887
No 280
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=86.53 E-value=0.35 Score=49.25 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=19.1
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
.+++|+|+.++||||+.+.++
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999865
No 281
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=86.39 E-value=0.16 Score=61.21 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
.+.+|||+|++||||+|..++++.
T Consensus 61 g~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 61 GFCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp SEEEEEESHHHHHHHHTHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 389999999999999999988763
No 282
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.37 E-value=0.36 Score=51.50 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.6
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
..++.|+|||++||||+.|.++
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~ 37 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIA 37 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999776
No 283
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=86.31 E-value=0.34 Score=50.23 Aligned_cols=20 Identities=45% Similarity=0.752 Sum_probs=18.0
Q ss_pred ceEEEEccCCCChhHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQV 1047 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqv 1047 (1162)
|.+||+||.++||+|+++.+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L 21 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKL 21 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 56999999999999999864
No 284
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=85.94 E-value=0.22 Score=50.87 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=18.9
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
+++.|+||+++||||+++.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368899999999999999876
No 285
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=85.78 E-value=0.82 Score=52.10 Aligned_cols=22 Identities=50% Similarity=0.513 Sum_probs=19.4
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1162)
+-++|+||-+.|||++.|.+|-
T Consensus 85 ~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 3489999999999999998874
No 286
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=85.54 E-value=0.41 Score=48.97 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=23.9
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcCCcc
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fV 1060 (1162)
++++|+||+++||||+++.+.- .+...|.-|
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~--~l~~~g~~v 37 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP--ALCARGIRP 37 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH--HHHHTTCCE
T ss_pred eEEEEEeCCCCCHHHHHHHHHH--hccccCCce
Confidence 5799999999999999998653 355656433
No 287
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=85.38 E-value=0.74 Score=54.20 Aligned_cols=22 Identities=45% Similarity=0.472 Sum_probs=19.9
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1162)
+.++|+||.|.|||+++|.+|-
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998874
No 288
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=85.18 E-value=0.41 Score=48.46 Aligned_cols=21 Identities=43% Similarity=0.491 Sum_probs=19.1
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
++++|+||.++||||+.+.++
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHH
Confidence 568999999999999999876
No 289
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=84.84 E-value=0.48 Score=52.50 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=19.6
Q ss_pred eEEEEccCCCChhHHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLi 1050 (1162)
.++|+||.+.||||++|.++-.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 3899999999999999988754
No 290
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=84.77 E-value=0.55 Score=50.79 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=19.0
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaL 1049 (1162)
-++|+||.|.|||+++|.+|-
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999998874
No 291
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=84.71 E-value=0.46 Score=48.75 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=18.4
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
+++|+|+.++||||+.+.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~ 21 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEIS 21 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHH
Confidence 58999999999999999876
No 292
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=84.54 E-value=0.4 Score=53.42 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=17.3
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|||++||||+|++++
T Consensus 21 I~lvG~nG~GKSTLl~~L~ 39 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLF 39 (301)
T ss_dssp EEEEEETTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5899999999999999965
No 293
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=84.51 E-value=0.34 Score=53.34 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=18.9
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaL 1049 (1162)
-++|+||.|.|||+++|.++-
T Consensus 52 ~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999998874
No 294
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.32 E-value=0.81 Score=54.95 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=20.1
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
.+.++|+||.|.||||++|.+|-
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998773
No 295
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=84.29 E-value=0.53 Score=48.07 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.8
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
..+++|+||.++||||+.+.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999886
No 296
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=84.29 E-value=0.54 Score=48.29 Aligned_cols=23 Identities=30% Similarity=0.213 Sum_probs=20.0
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
..++.|||+.++||||+.+.++-
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999988763
No 297
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=84.16 E-value=0.98 Score=53.20 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=28.6
Q ss_pred ceecCCCCCcceEEEEccCCCChhHHHHHHHHHHHHH
Q 001077 1018 DITIGGHGNASFILLTGPNMGGKSTLLRQVCLAVILA 1054 (1162)
Q Consensus 1018 Di~l~~~~~~~~~IITGPNMgGKST~LRqvaLivILA 1054 (1162)
|-.++|=....+++|+|+.+.|||||+-|+|..+...
T Consensus 188 D~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~ 224 (444)
T 3bgw_A 188 DRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN 224 (444)
T ss_dssp HHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT
T ss_pred HhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc
Confidence 3334433345689999999999999999999887664
No 298
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=83.97 E-value=1.3 Score=46.97 Aligned_cols=53 Identities=25% Similarity=0.246 Sum_probs=27.8
Q ss_pred CcceEEEEccCCCChhH-HHHHHHHHHHHHHcCCcc--cCCccccCCcceeeeecCCc
Q 001077 1026 NASFILLTGPNMGGKST-LLRQVCLAVILAQVGADV--PAEIFEISPVDRIFVRMGAK 1080 (1162)
Q Consensus 1026 ~~~~~IITGPNMgGKST-~LRqvaLivILAQiG~fV--PA~~a~l~i~DrIfTRIGa~ 1080 (1162)
...+.+||||-.+|||| +||. +.-..-+..-+.| |+...+-+ ...|.+|+|-.
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~-~~r~~~~g~kvli~kp~~D~R~~-~~~I~Sr~G~~ 82 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRR-LRRGIYAKQKVVVFKPAIDDRYH-KEKVVSHNGNA 82 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHH-HHHHHHTTCCEEEEEEC------------CBTTBC
T ss_pred CceEEEEECCCCCCHHHHHHHH-HHHHHHcCCceEEEEeccCCcch-hhhHHHhcCCc
Confidence 35799999999999999 6666 4444444333332 44433322 23577777753
No 299
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=83.95 E-value=0.15 Score=62.24 Aligned_cols=31 Identities=32% Similarity=0.465 Sum_probs=24.1
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcCCcc
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fV 1060 (1162)
++++||||+|.||||+++.++ ..+.+.|.-|
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~--~~l~~~g~~V 235 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVA--DLAESLGLEV 235 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHH--HHHHHTTCCE
T ss_pred CEEEEEcCCCCCHHHHHHHHH--HHHHhcCCeE
Confidence 589999999999999988754 4555666433
No 300
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=83.80 E-value=0.29 Score=50.55 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.5
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
...++|.|||++||||+++.++
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 3568999999999999999876
No 301
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=83.74 E-value=1.7 Score=58.98 Aligned_cols=89 Identities=24% Similarity=0.225 Sum_probs=49.5
Q ss_pred CcceEEEEccCCCChhHHHHHHHHHHHHHHcC---CcccCCccccCCcceeeeecCCc-cchhhcccchHHHHHHHHHHH
Q 001077 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQVG---ADVPAEIFEISPVDRIFVRMGAK-DHIMAGQSTFLTELSETALML 1101 (1162)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivILAQiG---~fVPA~~a~l~i~DrIfTRIGa~-D~i~~g~STFmvEM~Eta~IL 1101 (1162)
..++++|.||++.||||++.++|..+.. -| .|+-++...-.+ +..++|.. ++|.--..+-..++.+...-+
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~--~g~~VlyiS~Ees~~ql---~A~~lGvd~~~L~i~~~~~leei~~~l~~l 805 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPI---YARKLGVDIDNLLCSQPDTGEQALEICDAL 805 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEECTTSCCCHH---HHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHH--cCCCeEEEeccchHHHH---HHHHcCCChhheEEecCCcHHHHHHHHHHH
Confidence 4578999999999999999999887653 33 355554322111 01223311 222111111123444443323
Q ss_pred hcCCCCcEEEEcCCCCCC
Q 001077 1102 SSATRNSLVVLDELGRGT 1119 (1162)
Q Consensus 1102 ~~AT~~SLVIlDELGRGT 1119 (1162)
.....-+|||||+|.-=.
T Consensus 806 v~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 806 ARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp HHHTCCSEEEESCSTTCC
T ss_pred HHccCCCEEEEechhhhc
Confidence 233456899999998644
No 302
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=83.68 E-value=0.55 Score=47.65 Aligned_cols=21 Identities=38% Similarity=0.302 Sum_probs=19.0
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaL 1049 (1162)
+++|+||-++||||+.+.++-
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998763
No 303
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=83.66 E-value=0.57 Score=47.54 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=19.3
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
..+++|+||.++||||+.+.++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999998775
No 304
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=83.61 E-value=0.56 Score=47.93 Aligned_cols=30 Identities=33% Similarity=0.489 Sum_probs=22.4
Q ss_pred eEEEEccCCCChhHHHHHHHHHHHHHHcCCcc
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~fV 1060 (1162)
+++||||-++||||+.+.++- .+...|..|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~--~l~~~g~~v 31 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKV 31 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHCCC-E
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCeE
Confidence 689999999999999998652 334447644
No 305
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=83.55 E-value=0.56 Score=48.38 Aligned_cols=21 Identities=33% Similarity=0.689 Sum_probs=19.1
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaL 1049 (1162)
++.||||.++||||+.|.++-
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998764
No 306
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=83.50 E-value=0.32 Score=50.62 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=18.4
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
+++|+||.++||||+++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 68999999999999999865
No 307
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=83.42 E-value=0.9 Score=53.13 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=23.1
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCC
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~ 1058 (1162)
+++++|+|||++||||++..+|.. +++-|-
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~--l~~~g~ 127 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY--YKGKGR 127 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH--HHTTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHcCC
Confidence 457888999999999999987743 454453
No 308
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=83.40 E-value=0.72 Score=50.83 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.6
Q ss_pred EEEEccCCCChhHHHHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaLiv 1051 (1162)
++|+||.+.||||+++.++-..
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHh
Confidence 8999999999999999887543
No 309
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=83.32 E-value=2.8 Score=49.93 Aligned_cols=21 Identities=43% Similarity=0.531 Sum_probs=19.0
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
+-++|+||.|.|||+++|.++
T Consensus 239 ~~vLL~GppGtGKT~lAraia 259 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVA 259 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHHH
Confidence 348999999999999999986
No 310
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=83.28 E-value=0.55 Score=46.95 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=18.7
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
++++|||+.++||||+.+.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999876
No 311
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=83.26 E-value=0.58 Score=50.26 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.3
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
.++.|+||+++||||+.+.++
T Consensus 10 ~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999886
No 312
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=83.17 E-value=0.7 Score=54.58 Aligned_cols=67 Identities=24% Similarity=0.265 Sum_probs=41.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcC---
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSA--- 1104 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~A--- 1104 (1162)
+-++|+||.|.|||++.|.+|-. +|.-+ -|..+.+.+-. |.+..|...+..+++.|
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~-----l~~~~------------~~~~~~~~~~~----~~~~~~~~~~~~~f~~a~~~ 122 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQE-----LGSKV------------PFCPMVGSEVY----STEIKKTEVLMENFRRAIGL 122 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH-----HCTTS------------CEEEEEGGGGC----CSSSCHHHHHHHHHHHTEEE
T ss_pred CeEEEECCCcCCHHHHHHHHHHH-----hCCCc------------eEEEEeHHHHH----HHhhhhhHHHHHHHHHHHhh
Confidence 45899999999999999988744 35211 12222222221 22233333455666666
Q ss_pred --CCCcEEEEcCC
Q 001077 1105 --TRNSLVVLDEL 1115 (1162)
Q Consensus 1105 --T~~SLVIlDEL 1115 (1162)
...++|+|||+
T Consensus 123 ~~~~~~il~iDEi 135 (456)
T 2c9o_A 123 RIKETKEVYEGEV 135 (456)
T ss_dssp EEEEEEEEEEEEE
T ss_pred hhcCCcEEEEech
Confidence 46789999998
No 313
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=83.09 E-value=0.61 Score=48.15 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=19.4
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
.+++|+||-++||||+.+.++
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~ 25 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLK 25 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHH
Confidence 579999999999999999886
No 314
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=82.80 E-value=1.1 Score=47.14 Aligned_cols=45 Identities=24% Similarity=0.407 Sum_probs=38.1
Q ss_pred cccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEc-cCCchhhcccC
Q 001077 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLG 150 (1162)
Q Consensus 104 ~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~l~l~ 150 (1162)
.-+|.-|-+.|..|+.||.|.|++... +...|.| |.|..|.+.++
T Consensus 52 ~~~g~~c~a~~~~d~~wyRa~V~~v~~--~~~~V~~vDyG~~~~v~~~ 97 (218)
T 2wac_A 52 PKRGDLVAAQFTLDNQWYRAKVERVQG--SNATVLYIDYGNKETLPTN 97 (218)
T ss_dssp CCTTCEEEEECTTTCCEEEEEEEEEET--TEEEEEETTTCCEEEEEGG
T ss_pred CCcCCEEEEEECCCCeEEEEEEEEecC--CeEEEEEEecCCeEEEchH
Confidence 348899999999999999999999977 7788888 67998877543
No 315
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=82.52 E-value=0.24 Score=55.42 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.4
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
.++.|.|||++||||+|+.++
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHhc
Confidence 479999999999999999986
No 316
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=82.42 E-value=0.66 Score=49.00 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.6
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
..+++|+||.++||||+.+.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999876
No 317
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=82.39 E-value=0.65 Score=50.39 Aligned_cols=31 Identities=35% Similarity=0.435 Sum_probs=24.2
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCc
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~f 1059 (1162)
..+++|+|+.++||||+.+.++- .|.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~--~L~~~g~~ 34 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK--ILSKNNID 34 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH--HHHHTTCC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH--HHHhCCCE
Confidence 35799999999999999998763 34456754
No 318
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.16 E-value=1 Score=40.52 Aligned_cols=41 Identities=20% Similarity=0.157 Sum_probs=34.1
Q ss_pred ccccCceEEEecc---CCCeEEeEEEEeecCCC--CeEEEEccCCc
Q 001077 103 EDVLRKRIRVYWP---LDKAWYEGCVKSFDKEC--NKHLVQYDDGE 143 (1162)
Q Consensus 103 ~~~vg~rv~v~wp---~d~~~y~g~v~~~~~~~--~~h~v~Yddg~ 143 (1162)
.-.+|.+|.|+++ .+..||+++|.+..... ..+.|.|.+=.
T Consensus 9 ~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~N 54 (87)
T 2eko_A 9 EIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDFN 54 (87)
T ss_dssp SCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSSC
T ss_pred cccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCCC
Confidence 3459999999997 58999999999988754 47999998766
No 319
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=82.16 E-value=0.72 Score=51.18 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=20.3
Q ss_pred cceEEEEccCCCChhHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1162)
+.++.|+||.++||||+++.++-.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999976543
No 320
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=82.15 E-value=0.75 Score=47.44 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.7
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
..+++|+||-++||||+.+.++
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999998876
No 321
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=82.00 E-value=0.73 Score=46.70 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=19.1
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
+.++|+||-++||||+.+.++
T Consensus 6 ~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999876
No 322
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=81.99 E-value=2.5 Score=57.36 Aligned_cols=85 Identities=21% Similarity=0.218 Sum_probs=50.0
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHH-cCCcccCCcc-------ccC-CcceeeeecCCccchhhcccchHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQ-VGADVPAEIF-------EIS-PVDRIFVRMGAKDHIMAGQSTFLTELSET 1097 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQ-iG~fVPA~~a-------~l~-i~DrIfTRIGa~D~i~~g~STFmvEM~Et 1097 (1162)
.++++|+||.++|||++..|+|...+..- -..||-.+.. .++ -+|+|+..- . ....++.++
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~--p--------~t~e~l~~l 103 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQ--P--------DTGEQALEI 103 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEEC--C--------SSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeec--c--------CcHHHHHHH
Confidence 56899999999999999999998776431 1245554432 111 012222110 0 112234444
Q ss_pred HHHHhcCCCCcEEEEcCCCCCCCh
Q 001077 1098 ALMLSSATRNSLVVLDELGRGTST 1121 (1162)
Q Consensus 1098 a~IL~~AT~~SLVIlDELGRGTst 1121 (1162)
...|.......|||||+|+-=...
T Consensus 104 l~~L~~~~~~~LVVIDSLt~L~~~ 127 (1706)
T 3cmw_A 104 CDALARSGAVDVIVVDSVAALTPK 127 (1706)
T ss_dssp HHHHHHHTCCSEEEESCSTTCCCH
T ss_pred HHHHHhccCCCEEEEcchhhhccc
Confidence 444433356789999999875544
No 323
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=81.99 E-value=1.3 Score=44.91 Aligned_cols=50 Identities=14% Similarity=0.244 Sum_probs=40.4
Q ss_pred ccccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEc-cCCchhhcccCCceEEEE
Q 001077 103 EDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLGKEKIEWV 157 (1162)
Q Consensus 103 ~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~l~l~~e~~~~~ 157 (1162)
..-+|.-|-+.|+.|+.||.|.|.+.++.. ...|.| |=|..|.+ .+++-+
T Consensus 47 ~~~~G~~c~A~~~~d~~wyRa~I~~~~~~~-~~~V~fvDyGn~~~v----~~lr~l 97 (169)
T 3ntk_A 47 DLKEGALCVAQFPEDEVFYRAQIRKVLDDG-KCEVHFIDFGNNAVT----QQFRQL 97 (169)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECSTT-CEEEEETTTTEEEEE----SCEECC
T ss_pred CCCCCCEEEEEECCCCcEEEEEEEEECCCC-EEEEEEEecCCeEEh----hhhhcc
Confidence 345899999999999999999999998765 688888 88988763 455544
No 324
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=81.97 E-value=3.8 Score=37.27 Aligned_cols=43 Identities=16% Similarity=0.143 Sum_probs=34.1
Q ss_pred ccCceEEEeccCCCeEEeEEEEeecCCC--CeEEEEccCCc---hhhccc
Q 001077 105 VLRKRIRVYWPLDKAWYEGCVKSFDKEC--NKHLVQYDDGE---DELLDL 149 (1162)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~--~~h~v~Yddg~---~e~l~l 149 (1162)
-||.+|.|++ +..||++.|.+..... ..+.|.|.+=. .|||..
T Consensus 25 ~vG~kv~v~~--~~~~y~AkIl~ir~~~~~~~YyVHY~g~NkRlDEWV~~ 72 (92)
T 2ro0_A 25 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNKRLDEWITT 72 (92)
T ss_dssp CTTCEEEEEE--TTEEEEEEEEEEECSSSSCEEEEEETTSCTTSCEEEEG
T ss_pred cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCcccccccCH
Confidence 4999999998 8899999999877544 48999998766 455443
No 325
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=81.96 E-value=1.3 Score=46.16 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=40.3
Q ss_pred CccccCceEEEeccCCC--eEEeEEEEeecCCCC--eEEEEccCCchhhcccC
Q 001077 102 GEDVLRKRIRVYWPLDK--AWYEGCVKSFDKECN--KHLVQYDDGEDELLDLG 150 (1162)
Q Consensus 102 ~~~~vg~rv~v~wp~d~--~~y~g~v~~~~~~~~--~h~v~Yddg~~e~l~l~ 150 (1162)
+.=.||.||-..|.+.+ .||.|.|+.-+.... ++.|-||||...++.+.
T Consensus 67 ~~l~vG~RVVA~~~~~~~~~fY~GiVaE~p~~~N~~RyLVFFDDG~~~Yv~~~ 119 (213)
T 3dlm_A 67 DKLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGYASYVTQS 119 (213)
T ss_dssp GGCCTTCEEEEEEECSSCEEEEEEEEEECCCTTTTSCEEEEETTSCEEEECGG
T ss_pred cEEeEEEEEEEEecCCCCcceeeeEEEECCccCCCceEEEEEeCCCcceecCc
Confidence 34459999999999875 899999998665443 89999999998887765
No 326
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=81.87 E-value=0.75 Score=47.63 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.8
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
+.+++|||+-++||||+.+.++
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 4689999999999999999876
No 327
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.85 E-value=2 Score=49.78 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=23.2
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCc
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~f 1059 (1162)
++-+||.||-|.|||.+.|.+| .++|+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA-----~e~~~~ 209 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVA-----HHTDCK 209 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHH-----HHHTCE
T ss_pred CCceEEeCCCCCCHHHHHHHHH-----HhhCCC
Confidence 4569999999999999999998 455654
No 328
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=81.83 E-value=0.4 Score=55.12 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=20.7
Q ss_pred cceEEE--EccCCCChhHHHHHHHHH
Q 001077 1027 ASFILL--TGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1027 ~~~~II--TGPNMgGKST~LRqvaLi 1050 (1162)
.+.++| +||-+.||||+++.++-.
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHH
Confidence 467889 999999999999988743
No 329
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=81.77 E-value=0.75 Score=47.64 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=20.2
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
+.+++|||+-++||||+.+.++-
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998763
No 330
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=81.63 E-value=0.78 Score=47.16 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=19.4
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
+.+++|+||-++||||+.+.++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~ 25 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIM 25 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 3589999999999999999765
No 331
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=81.57 E-value=0.73 Score=52.48 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=19.4
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1162)
.++.|+||+++||||+|+.++-
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999998763
No 332
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=81.53 E-value=0.76 Score=46.97 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=19.2
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
.+++|+||-++||||+.|.++
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLV 33 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999998876
No 333
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=81.52 E-value=0.72 Score=50.84 Aligned_cols=22 Identities=36% Similarity=0.357 Sum_probs=19.6
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1162)
.+++|+||.++||||+.|.++-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998763
No 334
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=81.32 E-value=0.75 Score=48.62 Aligned_cols=20 Identities=45% Similarity=0.441 Sum_probs=18.4
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
+++|+||.++||||+.+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999886
No 335
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.27 E-value=1.9 Score=50.56 Aligned_cols=28 Identities=36% Similarity=0.402 Sum_probs=23.6
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCc
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~f 1059 (1162)
++-+||.||-|.|||.+.|.+| .++|+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA-----~e~~~~ 242 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACA-----AQTNAT 242 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHH-----HHHTCE
T ss_pred CCeeEEECcCCCCHHHHHHHHH-----HHhCCC
Confidence 4569999999999999999988 566754
No 336
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=81.25 E-value=0.58 Score=54.68 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=17.8
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|||++||||+|+.++
T Consensus 34 I~lvG~sGaGKSTLln~L~ 52 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLF 52 (418)
T ss_dssp EEEECCTTSSHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHh
Confidence 5899999999999999987
No 337
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=81.22 E-value=0.74 Score=51.09 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.3
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
.+.++|+||+|.||||++|.+|-
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHH
Confidence 35699999999999999998874
No 338
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=81.19 E-value=3.4 Score=48.39 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=22.7
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcC
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG 1057 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG 1057 (1162)
.++++|+||+++||||++-.+|. .+++-|
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~--~l~~~G 127 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR--YIQKRG 127 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH--HHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHcC
Confidence 35789999999999999987764 445555
No 339
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.17 E-value=0.7 Score=52.11 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.7
Q ss_pred EEEEccCCCChhHHHHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaLiv 1051 (1162)
++|+||||.||||++|.+|-..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999888553
No 340
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=80.96 E-value=0.62 Score=53.07 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=19.6
Q ss_pred eEEEEccCCCChhHHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLi 1050 (1162)
-++|+||.+.|||++.|.+|-.
T Consensus 53 ~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 53 NILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999844
No 341
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=80.90 E-value=1.5 Score=42.83 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=31.2
Q ss_pred ccCceEEEeccCCCeEEeEEEEeecC----CCCeEEEEccCCc
Q 001077 105 VLRKRIRVYWPLDKAWYEGCVKSFDK----ECNKHLVQYDDGE 143 (1162)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~----~~~~h~v~Yddg~ 143 (1162)
-||.+|.+||+ |..||++.|..... ....+.|.|.+=.
T Consensus 14 ~vGe~v~~~~~-d~~~y~AkIl~i~~~~~~~~~~YyVHY~gwN 55 (133)
T 1wgs_A 14 EIGETYLCRRP-DSTWHSAEVIQSRVNDQEGREEFYVHYVGFN 55 (133)
T ss_dssp CTTSEEEEEET-TTEEEEEEEEEEEEETTTTEEEEEEECTTTC
T ss_pred CCCCEEEEEeC-CCCEEEEEEEEEEeccCCCceEEEEeccCcC
Confidence 38999999998 78999999998664 3457999998644
No 342
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=80.74 E-value=0.87 Score=54.44 Aligned_cols=28 Identities=25% Similarity=0.128 Sum_probs=24.5
Q ss_pred CcceEEEEccCCCChhHHHHHHHHHHHH
Q 001077 1026 NASFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1162)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivIL 1053 (1162)
...+++|+|+.+.||||++-|+|..+..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~ 268 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGT 268 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHH
Confidence 3568999999999999999999987654
No 343
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=80.70 E-value=0.83 Score=53.30 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=24.4
Q ss_pred cccceecCCCCCcceEEEEccCCCChhHHHHHHH
Q 001077 1015 VPNDITIGGHGNASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1015 VPNDi~l~~~~~~~~~IITGPNMgGKST~LRqva 1048 (1162)
-|....+.. ....+++|+||.++||||+.|.++
T Consensus 247 ~p~~~~~~~-~~~~lIil~G~pGSGKSTla~~L~ 279 (416)
T 3zvl_A 247 LPESSSLLS-PNPEVVVAVGFPGAGKSTFIQEHL 279 (416)
T ss_dssp BSTTSCSCC-SSCCEEEEESCTTSSHHHHHHHHT
T ss_pred CCCccccCC-CCCEEEEEECCCCCCHHHHHHHHH
Confidence 344433432 246799999999999999999865
No 344
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=80.61 E-value=0.77 Score=46.53 Aligned_cols=21 Identities=33% Similarity=0.339 Sum_probs=18.7
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaL 1049 (1162)
+++|||+.++||||+.|.++-
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998763
No 345
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=80.41 E-value=0.86 Score=46.27 Aligned_cols=30 Identities=30% Similarity=0.342 Sum_probs=22.3
Q ss_pred eEEEEccCCCChhHHHHHHHHHHHHHHcCCcc
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~fV 1060 (1162)
+++|||+-++||||+.+.++- -+...|+.|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~--~l~~~g~~~ 31 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE--YLKQKGYFV 31 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH--HHHHTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCeE
Confidence 589999999999999998763 222336543
No 346
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=80.32 E-value=2.2 Score=58.75 Aligned_cols=101 Identities=25% Similarity=0.259 Sum_probs=55.8
Q ss_pred ccccceecC--CCCCcceEEEEccCCCChhHHHHHHHHHHHHHHcC---CcccCCccccCCcceeeeecCCc-cchhhcc
Q 001077 1014 FVPNDITIG--GHGNASFILLTGPNMGGKSTLLRQVCLAVILAQVG---ADVPAEIFEISPVDRIFVRMGAK-DHIMAGQ 1087 (1162)
Q Consensus 1014 fVPNDi~l~--~~~~~~~~IITGPNMgGKST~LRqvaLivILAQiG---~fVPA~~a~l~i~DrIfTRIGa~-D~i~~g~ 1087 (1162)
+-.-|-.|+ +-...++++|.||.+.||||++.|+|..+.. -| .|+-++...-.+ ...++|.. |++.--.
T Consensus 368 ~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~--~G~~vlyis~E~s~~~~---~a~~lGvd~~~L~I~~ 442 (2050)
T 3cmu_A 368 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPI---YARKLGVDIDNLLCSQ 442 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCCCHH---HHHHTTCCTTTCEEEC
T ss_pred CHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHh--cCCeEEEEEcCCCHHHH---HHHHcCCCHHHeEEeC
Confidence 334454454 2234579999999999999999999876643 23 344444311100 11223321 2221111
Q ss_pred cchHHHHHHHHHHHhcCCCCcEEEEcCCCCCC
Q 001077 1088 STFLTELSETALMLSSATRNSLVVLDELGRGT 1119 (1162)
Q Consensus 1088 STFmvEM~Eta~IL~~AT~~SLVIlDELGRGT 1119 (1162)
.+-..++.+...-|.....-.||+||.|..=.
T Consensus 443 ~~~~e~il~~~~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 443 PDTGEQALEICDALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp CSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred CCCHHHHHHHHHHHHHhcCCcEEEECCHHHhh
Confidence 12224555555544444567899999997554
No 347
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=80.07 E-value=0.93 Score=47.51 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=19.7
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
..+++|+||.++||||+.+.++
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999876
No 348
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=80.00 E-value=0.92 Score=45.09 Aligned_cols=20 Identities=35% Similarity=0.273 Sum_probs=18.0
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
.++|||+.++||||+.|.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLS 21 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48899999999999998766
No 349
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=79.95 E-value=0.65 Score=53.18 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.1
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaL 1049 (1162)
.++|+||.|.|||++.|.+|-
T Consensus 74 ~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999884
No 350
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=79.91 E-value=0.92 Score=51.42 Aligned_cols=31 Identities=29% Similarity=0.353 Sum_probs=23.9
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCc
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~f 1059 (1162)
..+++|+|||++||||+++.++ ..+++.|.-
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~--~~~~~~~~~ 86 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFG--MLLIREGLK 86 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHH--HHHHHTTCC
T ss_pred CEEEEEEcCCCCCHHHHHHHHH--HHHHhcCCe
Confidence 4578899999999999999776 344555543
No 351
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=79.84 E-value=0.91 Score=47.30 Aligned_cols=20 Identities=35% Similarity=0.360 Sum_probs=17.8
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
.++||||-++||||+.+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999875
No 352
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=79.74 E-value=0.89 Score=47.76 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.6
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
..+++|+||.++||||+.+.++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999876
No 353
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=79.66 E-value=0.96 Score=46.63 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.6
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
+.+++|+||-++||||+.|.++
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999876
No 354
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=79.61 E-value=1.4 Score=44.79 Aligned_cols=90 Identities=19% Similarity=0.195 Sum_probs=46.4
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCc-----ccc---CCccee-eeecCCccchh--hcccchHH---
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI-----FEI---SPVDRI-FVRMGAKDHIM--AGQSTFLT--- 1092 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~-----a~l---~i~DrI-fTRIGa~D~i~--~g~STFmv--- 1092 (1162)
.++++|+|+.++||||++..+ +-.|.+-|.-|-.-. ..+ +-.|.- +...|+..-+. .|.-.+|.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L--~~~l~~~g~~v~~ik~~~~~~diD~~~g~D~~r~~~aGa~~v~~~s~~~~~~~~~~~ 81 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKW--VAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVATAVEGDGLLQLHLRRP 81 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHH--HHHHHHTTCCEEEEECCC--------------------CSEEEEEETTEEEEEECCS
T ss_pred CEEEEEECCCCCCHHHHHHHH--HHhhHhcCCeeeEEEeCCCCcccccCCChhHHHHHhcCCCeEEeccCCEEEEEeccc
Confidence 357899999999999999874 446666675442111 111 112332 34456643321 22223333
Q ss_pred HH--HHHHHHHhcCCCCcEEEEcCCCCCC
Q 001077 1093 EL--SETALMLSSATRNSLVVLDELGRGT 1119 (1162)
Q Consensus 1093 EM--~Eta~IL~~AT~~SLVIlDELGRGT 1119 (1162)
|| .....++... .-.+||+.=+|.+.
T Consensus 82 ~~~~~~~~~ll~~~-~~D~vlVEg~~~~~ 109 (169)
T 1xjc_A 82 LWRLDDVLALYAPL-RLDLVLVEGYKQER 109 (169)
T ss_dssp CCCHHHHHHHHGGG-CCSEEEEECCTTSC
T ss_pred ccchHHHHHHHHhc-CCCEEEEeCCCCCC
Confidence 22 2334456655 77899998777653
No 355
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=78.99 E-value=6 Score=49.63 Aligned_cols=81 Identities=20% Similarity=0.246 Sum_probs=42.2
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcCCCC
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSATRN 1107 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~AT~~ 1107 (1162)
+-++|+||.+.||||+++.++-.+. .- .||.......+ +...+++--.-..-...|...+..+-.-+..+ .+
T Consensus 208 ~~vlL~G~~GtGKT~la~~la~~l~--~~--~v~~~~~~~~~---~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~-~~ 279 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGLAWRIV--QG--DVPEVMADCTI---YSLDIGSLLAGTKYRGDFEKRFKALLKQLEQD-TN 279 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH--HT--CSCGGGTTCEE---EECCCC---CCCCCSSCHHHHHHHHHHHHSSS-SC
T ss_pred CCeEEEcCCCCCHHHHHHHHHHHHH--hC--CCChhhcCCEE---EEEcHHHHhccccccchHHHHHHHHHHHHHhc-CC
Confidence 4579999999999999998886432 21 34432111111 11111111000011234554455444444433 46
Q ss_pred cEEEEcCCC
Q 001077 1108 SLVVLDELG 1116 (1162)
Q Consensus 1108 SLVIlDELG 1116 (1162)
.+++|||+.
T Consensus 280 ~iL~IDEi~ 288 (758)
T 1r6b_X 280 SILFIDEIH 288 (758)
T ss_dssp EEEEETTTT
T ss_pred eEEEEechH
Confidence 899999975
No 356
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=78.80 E-value=2.1 Score=48.17 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=20.2
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
.+.++++||.+.||||+.|.++-
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~ 46 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSR 46 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHH
T ss_pred ceeEEEECCCCchHHHHHHHHHH
Confidence 45799999999999999997774
No 357
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=78.47 E-value=1.1 Score=46.83 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=17.5
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++||||-++||||+.+.++
T Consensus 3 I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999875
No 358
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=77.98 E-value=1.1 Score=44.42 Aligned_cols=20 Identities=35% Similarity=0.373 Sum_probs=18.4
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
.++|.|++++||||++++++
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48899999999999999986
No 359
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=77.78 E-value=2.3 Score=45.26 Aligned_cols=44 Identities=20% Similarity=0.364 Sum_probs=37.2
Q ss_pred cCceEEEeccCCCeEEeEEEEeecCCCCeEEEEc-cCCchhhcccC
Q 001077 106 LRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLG 150 (1162)
Q Consensus 106 vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~l~l~ 150 (1162)
+|.-|-+.++.|+.||.|.|.+..+. +...|.| |=|..|.+.++
T Consensus 68 ~G~~c~a~~~~d~~WyRa~V~~~~~~-~~~~V~~vDyGn~~~v~~~ 112 (226)
T 4b9x_A 68 IGRPCCAFFSGDGNWYRALVKEILPS-GNVKVHFVDYGNVEEVTTD 112 (226)
T ss_dssp TTCEEEEEETTTTEEEEEEEEEECSS-SEEEEECTTTCCEEEEEGG
T ss_pred CCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEecCCEEEEEHH
Confidence 68889999999999999999998754 4578888 99998877544
No 360
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=77.72 E-value=1.5 Score=48.68 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=24.3
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCc
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~f 1059 (1162)
.++++|+|||++||||++..+|.. +++-|.-
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~ 128 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF--YKKKGFK 128 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH--HHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH--HHHCCCe
Confidence 467888999999999999988744 4565643
No 361
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=77.72 E-value=1.1 Score=45.05 Aligned_cols=20 Identities=35% Similarity=0.373 Sum_probs=18.4
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
-++|.|++++||||++++++
T Consensus 9 ~i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48899999999999999986
No 362
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.24 E-value=3.2 Score=48.36 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=23.1
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCc
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~f 1059 (1162)
++-+||.||-+.|||.+.|.+| .++|+.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA-----~e~~~~ 243 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVA-----NQTSAT 243 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHH-----HHHTCE
T ss_pred CCCCceECCCCchHHHHHHHHH-----HHhCCC
Confidence 4569999999999999999998 455643
No 363
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.08 E-value=3.2 Score=48.79 Aligned_cols=28 Identities=36% Similarity=0.399 Sum_probs=23.3
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCc
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~f 1059 (1162)
++-+||.||-|.|||++.|.+| .++|+.
T Consensus 243 prGILLyGPPGTGKTlLAkAiA-----~e~~~~ 270 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVA-----NRTDAT 270 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHH-----HHHTCE
T ss_pred CCceEeeCCCCCcHHHHHHHHH-----hccCCC
Confidence 4569999999999999999998 456653
No 364
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=76.98 E-value=1.9 Score=37.85 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=32.0
Q ss_pred ccCceEEEeccC--CCeEEeEEEEeecCCCC--eEEEEccCCc
Q 001077 105 VLRKRIRVYWPL--DKAWYEGCVKSFDKECN--KHLVQYDDGE 143 (1162)
Q Consensus 105 ~vg~rv~v~wp~--d~~~y~g~v~~~~~~~~--~h~v~Yddg~ 143 (1162)
.+|.+|.|+|++ +..||++.|.+.+...+ ++.|.|.+=.
T Consensus 7 ~vGekV~~~~~d~k~~~~y~AkIl~i~~~~~~~~Y~VHY~gwn 49 (76)
T 2lcc_A 7 LTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYYGWN 49 (76)
T ss_dssp STTCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEETTSC
T ss_pred CCCCEEEEEeCCCCCCCEEEEEEEEEEccCCceEEEEEeCCcC
Confidence 499999999994 37999999999887655 5789998644
No 365
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=76.64 E-value=3.4 Score=37.69 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=31.3
Q ss_pred ccCceEEEeccCCCeEEeEEEEeecCCC--CeEEEEccCCc
Q 001077 105 VLRKRIRVYWPLDKAWYEGCVKSFDKEC--NKHLVQYDDGE 143 (1162)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~--~~h~v~Yddg~ 143 (1162)
-||.+|.|++ +..||+++|.+-.... ..+.|.|.+=.
T Consensus 27 ~vG~kv~v~~--~~~~yeAeIl~ir~~~g~~~YYVHY~g~N 65 (94)
T 2rnz_A 27 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYN 65 (94)
T ss_dssp CTTEEEEEEC--SSCEEEEEEEEEECSSSSCEEEEECTTSC
T ss_pred cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcC
Confidence 4999999997 8899999999877544 48999998776
No 366
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=76.46 E-value=3 Score=57.33 Aligned_cols=101 Identities=23% Similarity=0.231 Sum_probs=55.5
Q ss_pred ccccceecC--CCCCcceEEEEccCCCChhHHHHHHHHHHHHHH-cCCcccCCccccCCcceeeeecCC-ccchhhcccc
Q 001077 1014 FVPNDITIG--GHGNASFILLTGPNMGGKSTLLRQVCLAVILAQ-VGADVPAEIFEISPVDRIFVRMGA-KDHIMAGQST 1089 (1162)
Q Consensus 1014 fVPNDi~l~--~~~~~~~~IITGPNMgGKST~LRqvaLivILAQ-iG~fVPA~~a~l~i~DrIfTRIGa-~D~i~~g~ST 1089 (1162)
|-.-|-.++ +-...++++|.|+++.|||||+.|+|..+.... -..||-.+...-.+ +-.|+|. .++|.--..+
T Consensus 717 ~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql---~A~rlG~~~~~l~i~~~~ 793 (2050)
T 3cmu_A 717 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI---YARKLGVDIDNLLCSQPD 793 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHH---HHHHTTCCTTTCEEECCS
T ss_pred ChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHH---HHHHcCCCccceEEecCC
Confidence 333455554 222357899999999999999999998765421 12344444321111 0123332 1333322222
Q ss_pred hHHHHHHHHHHHhcCCCCcEEEEcCCCC
Q 001077 1090 FLTELSETALMLSSATRNSLVVLDELGR 1117 (1162)
Q Consensus 1090 FmvEM~Eta~IL~~AT~~SLVIlDELGR 1117 (1162)
=..++.+.+.-|.....-.|||||.|.-
T Consensus 794 ~i~~i~~~~r~l~~~~~~~LVIIDsLq~ 821 (2050)
T 3cmu_A 794 TGEQALEICDALARSGAVDVIVVDSVAA 821 (2050)
T ss_dssp SHHHHHHHHHHHHHHTCCSEEEESCGGG
T ss_pred CHHHHHHHHHHHhhccCCCEEEEcchhh
Confidence 3445555554444334557999999753
No 367
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=76.43 E-value=11 Score=42.47 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=24.7
Q ss_pred eEEEEccCCCChhHHHHHHHHHHHHHHcCC-cccCCcccc
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGA-DVPAEIFEI 1067 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~-fVPA~~a~l 1067 (1162)
.++|.|++++||||+|..+. |. |.|.....+
T Consensus 36 ~I~vvG~~~sGKSSLln~l~--------g~~~lp~~~~~v 67 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIV--------GKDFLPRGSGIV 67 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHH--------TSCCSCCCSSSC
T ss_pred EEEEECCCCCcHHHHHHHHh--------CCCcCCCCCCcc
Confidence 58899999999999999987 75 557655443
No 368
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=75.82 E-value=1.3 Score=46.21 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=17.6
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|+||.++||||+.+.++
T Consensus 3 I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999876
No 369
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=75.77 E-value=4 Score=47.01 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.0
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVI 1052 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivI 1052 (1162)
..+.|-||.++||||++++++-.+-
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHHh
Confidence 4588999999999999999765553
No 370
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=75.47 E-value=1.1 Score=51.60 Aligned_cols=24 Identities=17% Similarity=0.022 Sum_probs=20.7
Q ss_pred eEEEEccCCCChhHHHHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVI 1052 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivI 1052 (1162)
-++|+||+++||||+++.++....
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~ 60 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREY 60 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999886653
No 371
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=75.24 E-value=1.5 Score=47.08 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=18.9
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
..++.||||-++||||+.+.++
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~ 43 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIV 43 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999988654
No 372
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=75.24 E-value=1.5 Score=45.74 Aligned_cols=50 Identities=24% Similarity=0.169 Sum_probs=32.3
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcc--cCCccccCCcceeeeecC
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV--PAEIFEISPVDRIFVRMG 1078 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fV--PA~~a~l~i~DrIfTRIG 1078 (1162)
.++.+|+||=++||||.|-|..-.-..+..=+.+ |+-.-+.+ +.|-+|+|
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~--~~i~S~~g 71 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS--SSFCTHDR 71 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGG--GSCCHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccch--hhhhhccC
Confidence 4699999999999997776666566666443322 44222333 34666665
No 373
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=75.10 E-value=1.6 Score=46.89 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=19.7
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
...++|+||-++||||+.+.++
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999886
No 374
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=75.02 E-value=1.5 Score=44.01 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=18.2
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
-++|.|++++||||+++.++
T Consensus 6 ki~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999976
No 375
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=74.84 E-value=1.6 Score=47.99 Aligned_cols=22 Identities=27% Similarity=0.301 Sum_probs=20.0
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
..+++|||+-++||||+.+.++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999887
No 376
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=74.57 E-value=1.3 Score=44.77 Aligned_cols=19 Identities=37% Similarity=0.674 Sum_probs=17.8
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|++++||||+++.++
T Consensus 5 v~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEESCTTSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999876
No 377
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=74.48 E-value=1.8 Score=50.11 Aligned_cols=21 Identities=29% Similarity=0.252 Sum_probs=19.1
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
..+.|-|+|++||||+++.++
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Lt 41 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAIT 41 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999987
No 378
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=74.44 E-value=1.7 Score=43.34 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=18.6
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
.+++|||+-++||||+.|.++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999999988865
No 379
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=74.26 E-value=1.4 Score=54.07 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=20.1
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1162)
..++|+|||+.||||++|.++-
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHhc
Confidence 4699999999999999999984
No 380
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=74.23 E-value=1.6 Score=45.71 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=18.9
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
.+++|+||-++||||+.+.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999876
No 381
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=74.21 E-value=1.8 Score=48.39 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=25.1
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcC-CcccCCcc
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG-ADVPAEIF 1065 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG-~fVPA~~a 1065 (1162)
.++++|+||.++||||+.+.+|- +.| -.|.|+++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~-----~~~~~iis~Ds~ 44 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK-----ILPVELISVDSA 44 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-----HSCEEEEECCTT
T ss_pred CcEEEEECCCccCHHHHHHHHHH-----hCCCcEEecccc
Confidence 46899999999999999888763 334 34555554
No 382
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=73.99 E-value=1.6 Score=48.14 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.1
Q ss_pred eEEEEccCCCChhHHHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
.++|+||+|.||||++|.++-..
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHH
Confidence 48999999999999999887643
No 383
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=73.82 E-value=1.8 Score=52.35 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=21.7
Q ss_pred eEEEEccCCCChhHHHHHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVIL 1053 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivIL 1053 (1162)
-++|.|..++|||++|+.+.+..++
T Consensus 216 HlLIaG~TGSGKS~~L~tlI~sLl~ 240 (574)
T 2iut_A 216 HLLVAGTTGSGKSVGVNAMLLSILF 240 (574)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred eeEEECCCCCCHHHHHHHHHHHHHH
Confidence 3899999999999999998876554
No 384
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=73.61 E-value=1.4 Score=48.81 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=17.1
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
..++.||||-++||||+.+.++-
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998763
No 385
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=72.97 E-value=1.9 Score=45.39 Aligned_cols=32 Identities=34% Similarity=0.454 Sum_probs=25.1
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcc
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fV 1060 (1162)
+.+++|+||.++||||.++.++ -.|...|.-|
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~--~~l~~~~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLA--ERLRERGIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH--HHHHTTTCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHH--HHHHHcCCCc
Confidence 4689999999999999998875 4555566543
No 386
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=72.94 E-value=1.8 Score=48.72 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=25.0
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcC-CcccCCcc
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVG-ADVPAEIF 1065 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG-~fVPA~~a 1065 (1162)
++++|+||.++||||+.+.+| .+.| .+|.+++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La-----~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALA-----DALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHH-----HHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHH-----HHcCCcEEeccch
Confidence 479999999999999988876 3455 45556544
No 387
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=72.89 E-value=3.8 Score=39.60 Aligned_cols=37 Identities=14% Similarity=0.363 Sum_probs=29.9
Q ss_pred ccCceEEEeccCCC----eEEeEEEEeecCCCCeEEEEccCCc
Q 001077 105 VLRKRIRVYWPLDK----AWYEGCVKSFDKECNKHLVQYDDGE 143 (1162)
Q Consensus 105 ~vg~rv~v~wp~d~----~~y~g~v~~~~~~~~~h~v~Yddg~ 143 (1162)
-+|..|.|||..+. .||.|+|+... ...|.|.|++=+
T Consensus 62 ~~gd~VEV~~~~~d~ep~gWw~a~I~~~k--g~f~~V~y~~~~ 102 (128)
T 3h8z_A 62 TEGDEVEVYSRANEQEPCGWWLARVRMMK--GDFYVIEYAACD 102 (128)
T ss_dssp CTTCEEEEEECC---CCCEEEEEEEEEEE--TTEEEEEETTC-
T ss_pred CCCCEEEEEecCCCCCcCccEEEEEEEee--CCEEEEEEcCCC
Confidence 48999999999877 89999999976 468999998744
No 388
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=72.60 E-value=1.8 Score=49.03 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=25.0
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcC-CcccCCcc
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVG-ADVPAEIF 1065 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG-~fVPA~~a 1065 (1162)
.+++|+||.++||||+.+.++- ++| .+|.+++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~-----~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK-----KFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH-----HTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHH-----HcCCceeccccc
Confidence 4799999999999999988764 344 45556554
No 389
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=72.38 E-value=1.6 Score=51.47 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=22.5
Q ss_pred eEEEEccCCCChhHHHHHHHHHHHHHHcCC
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~ 1058 (1162)
.++|+||-|+||||+++. ++..|.+.|-
T Consensus 47 ~~li~G~aGTGKT~ll~~--~~~~l~~~~~ 74 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKF--IIEALISTGE 74 (459)
T ss_dssp EEEEECCTTSCHHHHHHH--HHHHHHHTTC
T ss_pred EEEEEeCCCCCHHHHHHH--HHHHHHhcCC
Confidence 799999999999999964 4455666664
No 390
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=71.90 E-value=2 Score=44.45 Aligned_cols=23 Identities=30% Similarity=0.143 Sum_probs=19.8
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
..++.|||+-++||||+.+.++-
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999987663
No 391
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=71.81 E-value=2 Score=48.13 Aligned_cols=33 Identities=12% Similarity=0.305 Sum_probs=25.0
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcC-CcccCCcc
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVG-ADVPAEIF 1065 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG-~fVPA~~a 1065 (1162)
++++|+||.++||||+.+.+|- +.| -+|.|+++
T Consensus 4 ~~i~i~GptgsGKt~la~~La~-----~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAK-----RLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-----TTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHH-----hCccceeecCcc
Confidence 5789999999999999888763 234 45566655
No 392
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=71.41 E-value=2.2 Score=45.83 Aligned_cols=30 Identities=40% Similarity=0.516 Sum_probs=23.7
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCC
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~ 1058 (1162)
+.+++|.||.++||||.++.++- .|...|.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~--~l~~~~~ 56 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVE--TLQQNGI 56 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHH--HHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHhcCC
Confidence 46899999999999999988763 4455554
No 393
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=71.20 E-value=2.4 Score=44.25 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=16.3
Q ss_pred ceEEEEccCCCChhHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQ 1046 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRq 1046 (1162)
-+.+|||+.++|||++...
T Consensus 6 mi~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHH
Confidence 3789999999999999744
No 394
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=70.96 E-value=4.4 Score=51.09 Aligned_cols=22 Identities=41% Similarity=0.511 Sum_probs=20.2
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
++-+||+||-+.|||++.|.+|
T Consensus 238 p~GILL~GPPGTGKT~LAraiA 259 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4569999999999999999988
No 395
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=70.96 E-value=3.5 Score=44.26 Aligned_cols=44 Identities=25% Similarity=0.327 Sum_probs=36.6
Q ss_pred cccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEc-cCCchhhccc
Q 001077 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDL 149 (1162)
Q Consensus 104 ~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~l~l 149 (1162)
.-+|.-|-+.|. |+.||.|.|++.... +...|.| |-|..|.+.+
T Consensus 66 ~~~G~~c~a~~~-d~~wyRa~V~~~~~~-~~~~V~~vDyGn~~~v~~ 110 (246)
T 2hqx_A 66 PRRGEFCIAKFV-DGEWYRARVEKVESP-AKIHVFYIDYGNREVLPS 110 (246)
T ss_dssp CCTTCEEEEECT-TSCEEEEEEEEEEET-TEEEEEETTTCCEEEECG
T ss_pred CCCCCEEEEEcC-CCCEEEEEEEEEcCC-CeEEEEEEeCCCeEEEeH
Confidence 348999999999 999999999999764 4678888 6699887754
No 396
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=70.92 E-value=2 Score=44.09 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=18.3
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
+++|||+-.||||||..+.+
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la 20 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALI 20 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHHHH
Confidence 37899999999999999977
No 397
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=70.38 E-value=2.3 Score=45.19 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.7
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
+.+++|.|+-++||||+++.++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~ 23 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLT 23 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 3689999999999999999876
No 398
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=69.97 E-value=1.3 Score=56.18 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.9
Q ss_pred cceEEEEccCCCChhHHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi 1050 (1162)
.+.++|.|||+.||||+.|.+|-.
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred CceeEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999854
No 399
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=69.93 E-value=2.2 Score=48.51 Aligned_cols=24 Identities=29% Similarity=0.602 Sum_probs=20.2
Q ss_pred ceEEEEccCCCChhHHHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
..++|.||+++||||+.|.+|-..
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 348899999999999999887543
No 400
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=69.87 E-value=2.2 Score=44.38 Aligned_cols=21 Identities=43% Similarity=0.632 Sum_probs=18.6
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
.+++|||+.++||||+.+.++
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~ 24 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVA 24 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999998765
No 401
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=69.65 E-value=1.2 Score=51.82 Aligned_cols=21 Identities=33% Similarity=0.350 Sum_probs=18.9
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
..+.|.|||.+||||||+.++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Ls 178 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMT 178 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHC
T ss_pred CEEEEECCCCCcHHHHHHHHH
Confidence 358899999999999999886
No 402
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=69.43 E-value=2.2 Score=45.44 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=17.0
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
+.+++|.||.++||||.++.++
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~ 46 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFC 46 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999876
No 403
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=69.23 E-value=2.9 Score=47.29 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=24.7
Q ss_pred CcceEEEEccCCCChhHHHHHHHHHHHH
Q 001077 1026 NASFILLTGPNMGGKSTLLRQVCLAVIL 1053 (1162)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivIL 1053 (1162)
...+++|+|+++.|||||+.++|..+..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999988765
No 404
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=68.99 E-value=2.7 Score=44.46 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.2
Q ss_pred CcceEEEEccCCCChhHHHHHHH
Q 001077 1026 NASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqva 1048 (1162)
..++++|.||.++||+|..+.++
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999887776
No 405
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=68.97 E-value=5.3 Score=41.52 Aligned_cols=50 Identities=18% Similarity=0.362 Sum_probs=40.0
Q ss_pred ccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEc-cCCchhhcccCCceEEEE
Q 001077 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLGKEKIEWV 157 (1162)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~l~l~~e~~~~~ 157 (1162)
-+|.-|-+.++.|+.||.|.|++..+. +...|.| |=|..|.+.+ .+++.+
T Consensus 67 ~~G~~c~a~~~~d~~wyRa~V~~~~~~-~~~~V~~vDyG~~~~v~~--~~l~~l 117 (201)
T 4b9w_A 67 EIGRPCCAFFSGDGNWYRALVKEILPS-GNVKVHFVDYGNVEEVTT--DQLQAI 117 (201)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEECTT-SCEEEEETTTCCEEEECG--GGEEEC
T ss_pred CCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEccCCEEEEEH--HHhccC
Confidence 378889999999999999999998765 4577888 9999887754 345555
No 406
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=68.94 E-value=7.7 Score=43.96 Aligned_cols=31 Identities=29% Similarity=0.288 Sum_probs=23.9
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCc
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGAD 1059 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~f 1059 (1162)
..+++|||+.++||||++..++.. +++.|--
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~--l~~~g~k 109 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMH--LIERGHR 109 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH--HHTTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH--HHhCCCc
Confidence 356899999999999999877643 5666643
No 407
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=68.61 E-value=2.7 Score=44.25 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=24.3
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCC
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~ 1058 (1162)
+.+++|.||.++||||.++.++ -.|...|.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~--~~l~~~~~ 32 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVV--ETLEQLGI 32 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHH--HHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHH--HHHHHcCC
Confidence 3589999999999999998765 45666664
No 408
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=68.48 E-value=2.8 Score=44.30 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.0
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
..+++|+||-++||||+.+.++-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998873
No 409
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=68.43 E-value=3.7 Score=51.57 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.1
Q ss_pred eEEEEccCCCChhHHHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
.++|+||.+.|||++.|.++-..
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 58999999999999999887543
No 410
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=68.32 E-value=4.9 Score=37.25 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=30.6
Q ss_pred ccCceEEEeccCCCeEEeEEEEeecCCCC--eEEEEccCCc
Q 001077 105 VLRKRIRVYWPLDKAWYEGCVKSFDKECN--KHLVQYDDGE 143 (1162)
Q Consensus 105 ~vg~rv~v~wp~d~~~y~g~v~~~~~~~~--~h~v~Yddg~ 143 (1162)
-+|.+|.++| +..||++.|.+.....+ .+.|.|.+=.
T Consensus 24 ~vGekVl~~~--~~~~YeAkIl~v~~~~~~~~Y~VHY~GwN 62 (102)
T 2f5k_A 24 QEGERVLCFH--GPLLYEAKCVKVAIKDKQVKYFIHYSGWN 62 (102)
T ss_dssp CTTCEEEEES--SSSEEEEEEEEEEEETTEEEEEEEETTSC
T ss_pred CCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcC
Confidence 4899999999 68999999998775443 7999998644
No 411
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=68.12 E-value=7.5 Score=35.21 Aligned_cols=37 Identities=16% Similarity=0.022 Sum_probs=30.5
Q ss_pred CceEEEeccCCCeEEeEEEEeecCCC-----CeEEEEccCCch
Q 001077 107 RKRIRVYWPLDKAWYEGCVKSFDKEC-----NKHLVQYDDGED 144 (1162)
Q Consensus 107 g~rv~v~wp~d~~~y~g~v~~~~~~~-----~~h~v~Yddg~~ 144 (1162)
|.+|-|+|+ |..||+++|..-.... .++.|.|.+-..
T Consensus 18 ~e~vlc~~~-dg~~yeAeIl~ir~~~~~~~~~~YYVHY~g~Nk 59 (92)
T 2bud_A 18 DKIYFIRRE-DGTVHRGQVLQSRTTENAAAPDEYYVHYVGLNR 59 (92)
T ss_dssp TSCEEEECT-TSCEEEEEEEEEECTTTCSSCCEEEEECSSSCT
T ss_pred CCEEEEEeC-CCCEEEEEEEEEeeccCCCCCcEEEEEeCCccc
Confidence 889999996 7899999999866543 489999987773
No 412
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=68.02 E-value=2.6 Score=48.12 Aligned_cols=20 Identities=50% Similarity=0.742 Sum_probs=18.2
Q ss_pred EEEEccCCCChhHHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaL 1049 (1162)
++|.|+..|||||++||.-+
T Consensus 36 illlG~~~SGKST~~kq~~i 55 (362)
T 1zcb_A 36 ILLLGAGESGKSTFLKQMRI 55 (362)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999854
No 413
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=67.37 E-value=3.1 Score=43.51 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=24.3
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcC-CcccCCccccC
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVG-ADVPAEIFEIS 1068 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG-~fVPA~~a~l~ 1068 (1162)
+.++|+||-++||||+.... |+-| -.|.+++..+-
T Consensus 35 ~~ilI~GpsGsGKStLA~~L------a~~g~~iIsdDs~~v~ 70 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALEL------VQRGHRLIADDRVDVY 70 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHH------HTTTCEEEESSEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHH------HHhCCeEEecchhhee
Confidence 57999999999999987553 4544 34455554443
No 414
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=66.44 E-value=1.1 Score=52.67 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.4
Q ss_pred CcceEEEEccCCCChhHHHHHHH
Q 001077 1026 NASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqva 1048 (1162)
..++.+|+||-|+||||+|++.+
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~ 182 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRV 182 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHC
T ss_pred cccEEEEEcCCCCCHHHHHHHHh
Confidence 35789999999999999998875
No 415
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=66.35 E-value=1.6 Score=52.73 Aligned_cols=113 Identities=16% Similarity=0.162 Sum_probs=59.8
Q ss_pred CcceEEEEccCCCChhHHHHHHHH---HHHHH--HcCCcccCCcc----ccCCcceeeeecCCccch--hhcccchHHHH
Q 001077 1026 NASFILLTGPNMGGKSTLLRQVCL---AVILA--QVGADVPAEIF----EISPVDRIFVRMGAKDHI--MAGQSTFLTEL 1094 (1162)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaL---ivILA--QiG~fVPA~~a----~l~i~DrIfTRIGa~D~i--~~g~STFmvEM 1094 (1162)
..+++.|+|+-|.||||+.++++- -.+-. ..-+||..... ...+...|...+|..++. ..+... ...
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~--~~~ 228 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEH--VTS 228 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTT--CCH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCccccccccccc--ccH
Confidence 357899999999999999998873 11111 12245544321 223444555555544220 011000 011
Q ss_pred HHHHHHHhc--CCC-CcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhc
Q 001077 1095 SETALMLSS--ATR-NSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKC 1150 (1162)
Q Consensus 1095 ~Eta~IL~~--AT~-~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~ 1150 (1162)
.+....|++ ... +-|||||.+-. .+-. +|.-. ...+++++|-....
T Consensus 229 ~~l~~~l~~~L~~~kr~LlVLDdv~~----~~~~--~~~~~----~gs~ilvTTR~~~v 277 (549)
T 2a5y_B 229 VVLKRMICNALIDRPNTLFVFDDVVQ----EETI--RWAQE----LRLRCLVTTRDVEI 277 (549)
T ss_dssp HHHHHHHHHHHTTSTTEEEEEEEECC----HHHH--HHHHH----TTCEEEEEESBGGG
T ss_pred HHHHHHHHHHHcCCCcEEEEEECCCC----chhh--ccccc----CCCEEEEEcCCHHH
Confidence 222333332 354 89999999865 2222 44321 45668888876543
No 416
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=65.73 E-value=6.6 Score=40.79 Aligned_cols=28 Identities=25% Similarity=0.172 Sum_probs=19.3
Q ss_pred eEEEEccCCCChhHHHHHHHHHHHHHHcCC
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~ 1058 (1162)
.++|.++|+-||||.. +|+++=.+.-|.
T Consensus 30 ~i~v~tG~GkGKTTaA--~GlalRA~g~G~ 57 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAA--FGTAARAVGHGK 57 (196)
T ss_dssp CEEEEESSSSCHHHHH--HHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHH--HHHHHHHHHCCC
Confidence 4666667779999985 455555556674
No 417
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=65.51 E-value=4.6 Score=42.45 Aligned_cols=30 Identities=27% Similarity=0.245 Sum_probs=25.2
Q ss_pred CcceEEEEccCCCChhHHHHHHHHHHHHHH
Q 001077 1026 NASFILLTGPNMGGKSTLLRQVCLAVILAQ 1055 (1162)
Q Consensus 1026 ~~~~~IITGPNMgGKST~LRqvaLivILAQ 1055 (1162)
...+++|+|+.++||||++-|+|......+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~ 58 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY 58 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc
Confidence 356899999999999999999988765543
No 418
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=65.49 E-value=3.4 Score=43.84 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=23.7
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHH-cCC
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQ-VGA 1058 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQ-iG~ 1058 (1162)
+.+++|+|+.++||||.++.++- .|.. .|.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~--~l~~~~g~ 51 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAE--YLSEIYGV 51 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH--HHHHHHCG
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHhhccCc
Confidence 57899999999999999998763 3444 553
No 419
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=65.40 E-value=3.7 Score=46.73 Aligned_cols=20 Identities=45% Similarity=0.737 Sum_probs=18.4
Q ss_pred EEEEccCCCChhHHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaL 1049 (1162)
++|-|...|||||++||+.+
T Consensus 12 ~lllG~~~sGKsT~~kq~~~ 31 (354)
T 2xtz_A 12 LLLLGAGESGKSTIFKQIKL 31 (354)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68889999999999999984
No 420
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=65.03 E-value=3.2 Score=41.80 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=18.8
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
.-++|.|+.++||||++.+++
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 358899999999999999876
No 421
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=64.80 E-value=3.2 Score=45.99 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=19.7
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
..++.|.|+|.+||||+++.+.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~ 29 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLL 29 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999986
No 422
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=64.21 E-value=7.2 Score=46.00 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=24.2
Q ss_pred eEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCC
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE 1063 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~ 1063 (1162)
-++|+||+|.|||++++.+|-.+. ...||..
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l~----~~~~p~~ 233 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQII----NNEVPEI 233 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHH----SSCSCTT
T ss_pred CeEEECCCCCCHHHHHHHHHHHHH----hCCCChh
Confidence 378999999999999999886543 3457753
No 423
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=64.13 E-value=4.2 Score=51.13 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.3
Q ss_pred eEEEEccCCCChhHHHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
.++|+||.|.|||++.|.+|-..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999888654
No 424
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=63.77 E-value=5.2 Score=50.99 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=19.9
Q ss_pred eEEEEccCCCChhHHHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAV 1051 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLiv 1051 (1162)
.++|+||+|.|||++.|.++-..
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999888543
No 425
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=63.68 E-value=3.5 Score=47.16 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=18.8
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
++++|.|+|++||||+|+.++
T Consensus 180 ~~V~lvG~~naGKSTLln~L~ 200 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLT 200 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 358899999999999999886
No 426
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=62.60 E-value=3.9 Score=39.51 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=17.6
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|+.++||||++++++
T Consensus 4 i~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999876
No 427
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=62.46 E-value=3.7 Score=43.42 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=18.2
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
-++|.|++++||||+++.+.
T Consensus 31 ~i~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999876
No 428
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=61.97 E-value=29 Score=31.14 Aligned_cols=48 Identities=23% Similarity=0.436 Sum_probs=37.1
Q ss_pred cCceEEEeccCCCeEEeEEEEeecCCCCeEEEEccCCc---hhhcccCCceE
Q 001077 106 LRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGE---DELLDLGKEKI 154 (1162)
Q Consensus 106 vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~---~e~l~l~~e~~ 154 (1162)
||.++.+.-+. +.||.+.|+.-+....+..|.||.=+ .||++....++
T Consensus 22 vGmkLEA~D~~-~~~~~a~i~~v~~~~~~v~VHfdGW~~~yDeWv~~dS~~I 72 (88)
T 2eqm_A 22 IGARLEALDYL-QKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRL 72 (88)
T ss_dssp SSCEEEEECTT-SCEEEEEEEEEETTTTEEEEEESSSTTTEEEEEETTSCCE
T ss_pred CCCEEEEEcCC-CCeeEEEEEEEeccCCEEEEEECCCCCcccEEeeCCCCcE
Confidence 99999999765 46999999999988899999998655 44444443333
No 429
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=61.28 E-value=17 Score=44.87 Aligned_cols=116 Identities=16% Similarity=0.230 Sum_probs=57.9
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHH-HHHcCC-----cccC----C-ccccCCccee--eeecCCccchh--hcccchH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVI-LAQVGA-----DVPA----E-IFEISPVDRI--FVRMGAKDHIM--AGQSTFL 1091 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivI-LAQiG~-----fVPA----~-~a~l~i~DrI--fTRIGa~D~i~--~g~STFm 1091 (1162)
.+.++|.|+|++||||+++.++-..- ..+.|. .+-- + .-.+++.-.. +..-+...+|. -|.-.|.
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~ 88 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV 88 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchH
Confidence 46789999999999999998763211 011111 1100 0 0012222111 11112233443 4667787
Q ss_pred HHHHHHHHHHhcCCCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcc
Q 001077 1092 TELSETALMLSSATRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCN 1151 (1162)
Q Consensus 1092 vEM~Eta~IL~~AT~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~ 1151 (1162)
.++... ++.+ .--++++| .-.|-+...-.-+.. +......+++..|-++..
T Consensus 89 ~~~~~~---l~~a-d~~ilVvD-~~~g~~~qt~~~~~~----~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 89 GEIRGA---LEAA-DAALVAVS-AEAGVQVGTERAWTV----AERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHH---HHHC-SEEEEEEE-TTTCSCHHHHHHHHH----HHHTTCCEEEEEECGGGC
T ss_pred HHHHHH---Hhhc-CcEEEEEc-CCcccchhHHHHHHH----HHHccCCEEEEecCCchh
Confidence 665544 4433 33477888 666655433322211 223445677777777654
No 430
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=60.87 E-value=4.6 Score=42.60 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.8
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
+.+++|.||.++||||.++.++
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~ 26 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILY 26 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999865
No 431
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=60.80 E-value=4.5 Score=42.30 Aligned_cols=20 Identities=25% Similarity=0.551 Sum_probs=17.7
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
+++|.||.++||+|.-+.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999988776
No 432
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=60.79 E-value=26 Score=45.55 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=24.3
Q ss_pred cceEEEEccCCCChhHHHHHHHHH-HHHHHcC
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLA-VILAQVG 1057 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLi-vILAQiG 1057 (1162)
.+++.|+||-|.||||+.++++-- -+-.+..
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd 181 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHS
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCC
Confidence 578999999999999999999842 2444444
No 433
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=60.61 E-value=4.1 Score=40.88 Aligned_cols=20 Identities=50% Similarity=0.697 Sum_probs=18.1
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
-++|.|++++||||++++++
T Consensus 18 ki~ivG~~~vGKSsL~~~l~ 37 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLA 37 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48899999999999999875
No 434
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=59.96 E-value=3.5 Score=41.02 Aligned_cols=20 Identities=35% Similarity=0.492 Sum_probs=17.8
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
-++|.|++++||||+++++.
T Consensus 20 ~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999998875
No 435
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=59.72 E-value=4.7 Score=38.85 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=17.5
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|+.++||||+++.+.
T Consensus 6 i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999998875
No 436
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=59.71 E-value=4.7 Score=39.16 Aligned_cols=19 Identities=26% Similarity=0.714 Sum_probs=17.4
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|+.++||||+++++.
T Consensus 8 i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 6899999999999999876
No 437
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=59.10 E-value=2.9 Score=45.10 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=19.9
Q ss_pred cceEEEEccCCCChhHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqva 1048 (1162)
..+++|.|+-++||||+++.++
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTG
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999876
No 438
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=59.07 E-value=4.7 Score=40.82 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=18.1
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
-++|.|++++||||++++.+
T Consensus 25 ki~~vG~~~vGKSsli~~l~ 44 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLK 44 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999876
No 439
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=58.91 E-value=4.8 Score=46.60 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=24.3
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCc
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEI 1064 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~ 1064 (1162)
.+++|+||.++||||+.+.++-.. -|-+|.|++
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~----~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF----NGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH----TEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHC----CCeEeecCc
Confidence 578999999999999988776432 134566655
No 440
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=58.58 E-value=5 Score=39.57 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=17.8
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
-++|.|+.++||||+++++.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999875
No 441
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=58.46 E-value=4.9 Score=44.51 Aligned_cols=21 Identities=43% Similarity=0.515 Sum_probs=19.5
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
++++|+||-+.||||++++++
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHH
Confidence 579999999999999999975
No 442
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=58.00 E-value=5.2 Score=45.23 Aligned_cols=20 Identities=35% Similarity=0.629 Sum_probs=17.6
Q ss_pred EEEEccCCCChhHHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaL 1049 (1162)
+||-|+..|||||++||.=+
T Consensus 8 lLLLG~geSGKSTi~KQmki 27 (340)
T 4fid_A 8 VMLLGSGESGKSTIAKQLKI 27 (340)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 57889999999999999754
No 443
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=57.86 E-value=5.1 Score=40.27 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=18.7
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
.-++|.|+.++||||+++++.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 348899999999999999886
No 444
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=57.83 E-value=5.3 Score=38.88 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=17.4
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|+.++||||+++++.
T Consensus 9 i~v~G~~~~GKSsli~~l~ 27 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFV 27 (170)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999975
No 445
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=57.72 E-value=5.3 Score=38.77 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=17.4
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|+.++||||+++++.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999875
No 446
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=57.69 E-value=5.3 Score=38.87 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=17.5
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|+.++||||+++++.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999876
No 447
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=57.68 E-value=4.7 Score=47.13 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=18.1
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
-++|.|+|++||||+++.++
T Consensus 182 kvaivG~~gvGKSTLln~l~ 201 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAIL 201 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999876
No 448
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=57.55 E-value=5.6 Score=44.94 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=25.6
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcC-CcccCCcc
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVG-ADVPAEIF 1065 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG-~fVPA~~a 1065 (1162)
.++++|+||-++||||+.+.+|- ++| -+|-|++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~-----~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAA-----HFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT-----TSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHH-----HCCCcEEccccc
Confidence 35899999999999999888763 455 45556555
No 449
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=57.44 E-value=13 Score=43.72 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=22.6
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILA 1054 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILA 1054 (1162)
..++|.||++.||||++++++..+-..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~ 178 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE 178 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc
Confidence 358899999999999999998766543
No 450
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=57.37 E-value=5.4 Score=38.88 Aligned_cols=19 Identities=32% Similarity=0.670 Sum_probs=17.4
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|+.++||||+++++.
T Consensus 9 i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999998875
No 451
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=57.19 E-value=5.4 Score=39.27 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=18.7
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
.-++|.|+.++||||+++++.
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 458899999999999999875
No 452
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=57.19 E-value=5.5 Score=38.50 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=17.5
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|+-++||||++++..
T Consensus 7 i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999876
No 453
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=57.19 E-value=5 Score=43.46 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=18.0
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
-++|.|++++||||+++.+.
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~ 24 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALT 24 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999874
No 454
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=57.18 E-value=5.7 Score=41.40 Aligned_cols=21 Identities=38% Similarity=0.762 Sum_probs=18.7
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
.|++|-|+-++||||.++.++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~ 23 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVY 23 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHH
Confidence 589999999999999988765
No 455
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=57.00 E-value=5.4 Score=39.75 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=17.5
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|+.++||||++++++
T Consensus 4 i~v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6899999999999999876
No 456
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=56.68 E-value=5.6 Score=38.67 Aligned_cols=19 Identities=47% Similarity=0.536 Sum_probs=17.6
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|+.++||||+++++.
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999876
No 457
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=56.65 E-value=5.6 Score=39.11 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=17.6
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|+.++||||+++++.
T Consensus 10 i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999875
No 458
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=56.48 E-value=6.1 Score=41.54 Aligned_cols=45 Identities=27% Similarity=0.237 Sum_probs=30.3
Q ss_pred eEEEEccCCCChhHHHHHHHHHHHHHHcCCccc-CCc-c------ccCCcceeeeecCC
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADVP-AEI-F------EISPVDRIFVRMGA 1079 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~fVP-A~~-a------~l~i~DrIfTRIGa 1079 (1162)
.+.|||.=++||||..+. |++.|+.|= |+. + .-..+..|+.+.|.
T Consensus 11 ~iglTGgigsGKStv~~~------l~~~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~ 63 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADL------FAARGASLVDTDLIAHRITAPAGLAMPAIEQTFGP 63 (210)
T ss_dssp EEEEECCTTSCHHHHHHH------HHHTTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHH------HHHCCCcEEECcHHHHHHhcCCcHHHHHHHHHhCh
Confidence 588999999999999884 456788763 332 1 12345566666653
No 459
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=55.89 E-value=6 Score=38.20 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=17.3
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|+.++||||++++..
T Consensus 6 i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999998865
No 460
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=55.78 E-value=5.7 Score=44.02 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=19.9
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaL 1049 (1162)
++++|+||-+.||||++++++-
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 461
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=55.73 E-value=6 Score=38.58 Aligned_cols=20 Identities=35% Similarity=0.492 Sum_probs=18.1
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
-++|.|+.++||||+++++.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~ 28 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQ 28 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999999885
No 462
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=55.67 E-value=4.6 Score=46.03 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=17.2
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|++++||||+++++.
T Consensus 40 I~vvG~~g~GKSTLln~L~ 58 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLF 58 (361)
T ss_dssp EEECCCTTSCHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 6899999999999999963
No 463
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=55.53 E-value=5.3 Score=40.81 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=18.0
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
-++|.|++++||||++++.+
T Consensus 27 ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999999875
No 464
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=55.51 E-value=5.9 Score=40.82 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=18.6
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqva 1048 (1162)
.-++|.|+.++||||++.+++
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~ 33 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLT 33 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 348899999999999999876
No 465
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=55.14 E-value=6.6 Score=40.57 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=19.7
Q ss_pred cceEEEEccCCCChhHHHHHHHH
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaL 1049 (1162)
...++|+|+.++||||++..++-
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999999987764
No 466
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=55.12 E-value=6.1 Score=39.50 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=17.9
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
-++|.|+.++||||+++++.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~ 44 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALF 44 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999874
No 467
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=55.04 E-value=5.8 Score=42.56 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=18.9
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVCL 1049 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaL 1049 (1162)
-++|+||.|.|||+++|.++-
T Consensus 31 ~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999999873
No 468
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=55.01 E-value=6.3 Score=44.82 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=19.0
Q ss_pred EEEEccCCCChhHHHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaLi 1050 (1162)
+||-|+.-|||||++||.=++
T Consensus 35 lLlLG~geSGKST~~KQmkii 55 (353)
T 1cip_A 35 LLLLGAGESGKSTIVKQMKII 55 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCchhHHHHHHHh
Confidence 688999999999999998765
No 469
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=54.84 E-value=6.3 Score=39.02 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=17.6
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|+.++||||+++.++
T Consensus 21 i~v~G~~~~GKSsli~~l~ 39 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFM 39 (187)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999876
No 470
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=54.81 E-value=4.9 Score=45.56 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=18.2
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
.++|.|+|++||||+++.++
T Consensus 169 ~v~lvG~~gvGKSTLin~L~ 188 (357)
T 2e87_A 169 TVVIAGHPNVGKSTLLKALT 188 (357)
T ss_dssp EEEEECSTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999999875
No 471
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=54.45 E-value=6.5 Score=38.51 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=17.5
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|+.++||||++++..
T Consensus 7 i~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHh
Confidence 7899999999999999875
No 472
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=54.30 E-value=23 Score=34.77 Aligned_cols=52 Identities=12% Similarity=0.018 Sum_probs=38.6
Q ss_pred CCCcEEEEcCCCCCCChhhHHHHHHHHHHhhcccCceEEEehhhhcccccce
Q 001077 1105 TRNSLVVLDELGRGTSTSDGQAIAVFSSGFQSLAGSQFLSTLFIKCNAVDCF 1156 (1162)
Q Consensus 1105 T~~SLVIlDELGRGTst~DG~AIA~A~~~~~~l~~~~~~~th~~~~~~~~~~ 1156 (1162)
....++||||--.|-++..-..|...+..+..-..+++++||......+.+.
T Consensus 80 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ 131 (148)
T 1f2t_B 80 GEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADH 131 (148)
T ss_dssp SSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred CCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCE
Confidence 4678999999988888777777776666665545689999999865555443
No 473
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=54.20 E-value=6.6 Score=38.26 Aligned_cols=19 Identities=37% Similarity=0.431 Sum_probs=17.3
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|+.++||||++++.+
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999874
No 474
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=54.13 E-value=6.6 Score=38.55 Aligned_cols=20 Identities=35% Similarity=0.340 Sum_probs=18.0
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
-++|.|+..+||||+++++.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~ 36 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFT 36 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999876
No 475
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=54.13 E-value=24 Score=30.08 Aligned_cols=37 Identities=19% Similarity=0.401 Sum_probs=31.6
Q ss_pred cCceEEEeccCCCeEEeEEEEeecCCCCeEEEEccCCc
Q 001077 106 LRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGE 143 (1162)
Q Consensus 106 vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~ 143 (1162)
||.++.+.-+... ||.++|+..+-..++-.|.||+=+
T Consensus 15 vGmkLEa~d~~~p-~~~AtV~~v~~~~~~~~VhfdGw~ 51 (69)
T 3sd4_A 15 VGAQLEARDRLKN-WYPAHIEDIDYEEGKVLIHFKRWN 51 (69)
T ss_dssp TTCEEEEECTTSC-EEEEEEEEEETTTTEEEEEETTSC
T ss_pred CCCEEEEEECCCC-ccccEEEEEeccCCEEEEEeCCCC
Confidence 8999999888766 599999999878889999998544
No 476
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=54.09 E-value=12 Score=35.85 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=32.7
Q ss_pred CccccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEccCCc
Q 001077 102 GEDVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDGE 143 (1162)
Q Consensus 102 ~~~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~ 143 (1162)
|....|..|+|.|++ ..-|.|...+..... .+.|..+||.
T Consensus 63 GpP~~G~~V~V~W~D-G~~y~a~f~g~~~~~-~YtV~FeDgs 102 (123)
T 2xdp_A 63 GPPAEGEVVQVKWPD-GKLYGAKYFGSNIAH-MYQVEFEDGS 102 (123)
T ss_dssp CCCCTTCEEEEECTT-SCEEEEEEEEEEEEE-EEEEECTTSC
T ss_pred CCCCCCCEEEEEcCC-CCEEeEEEeeeeeEE-EEEEEECCCC
Confidence 778899999999985 448888888876554 4889999997
No 477
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=53.88 E-value=6.6 Score=38.52 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=17.2
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|+.++||||+++.+.
T Consensus 17 i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6788999999999999875
No 478
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=53.36 E-value=6.8 Score=38.93 Aligned_cols=19 Identities=42% Similarity=0.506 Sum_probs=17.4
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|+.++||||+++++.
T Consensus 13 i~v~G~~~~GKSsli~~l~ 31 (186)
T 2bme_A 13 FLVIGNAGTGKSCLLHQFI 31 (186)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999875
No 479
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=53.32 E-value=7 Score=37.85 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=17.4
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|+.++||||++++..
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6889999999999999876
No 480
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=52.97 E-value=7.3 Score=40.26 Aligned_cols=30 Identities=33% Similarity=0.490 Sum_probs=24.2
Q ss_pred eEEEEccCCCChhHHHHHHHHHHHHHHcCCcc
Q 001077 1029 FILLTGPNMGGKSTLLRQVCLAVILAQVGADV 1060 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqvaLivILAQiG~fV 1060 (1162)
+++|-|+-++||||.++.++ -.|.+-|.-|
T Consensus 2 fI~~EG~DGsGKsTq~~~L~--~~L~~~g~~v 31 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLA--QYLEKRGKKV 31 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHH--HHHHHTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHH--HHHHHCCCcE
Confidence 57899999999999998765 5677778654
No 481
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=52.63 E-value=7.1 Score=38.84 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=17.5
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|+.++||||+++.+.
T Consensus 14 i~v~G~~~~GKSsli~~l~ 32 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYT 32 (195)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999876
No 482
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=52.54 E-value=11 Score=35.84 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=0.0
Q ss_pred cCceEEEeccCCCeEEeEEEEeecCCCCeEEEEccCC
Q 001077 106 LRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQYDDG 142 (1162)
Q Consensus 106 vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg 142 (1162)
||.+|...|+ +..||.|+|++-...+- |.|.+|||
T Consensus 8 vGq~V~akh~-ngryy~~~V~~~~~~~~-y~V~F~Dg 42 (118)
T 2qqr_A 8 AGQKVISKHK-NGRFYQCEVVRLTTETF-YEVNFDDG 42 (118)
T ss_dssp TTCEEEEECT-TSSEEEEEEEEEEEEEE-EEEEETTS
T ss_pred cCCEEEEECC-CCCEEeEEEEEEeeEEE-EEEEcCCC
No 483
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=52.50 E-value=7.1 Score=39.30 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=17.2
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|+.++||||++++..
T Consensus 23 i~ivG~~~vGKSsL~~~~~ 41 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYL 41 (184)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999998765
No 484
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=52.15 E-value=7.3 Score=38.66 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=17.5
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|+.++||||+++.+.
T Consensus 7 i~v~G~~~~GKSsli~~l~ 25 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLI 25 (189)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999875
No 485
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=52.10 E-value=7.3 Score=38.27 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=17.9
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
-++|.|+-++||||+++.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~ 30 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFI 30 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999998876
No 486
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=51.99 E-value=7.3 Score=38.92 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=17.3
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|+.++||||++++..
T Consensus 10 i~v~G~~~vGKSsli~~l~ 28 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFA 28 (184)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6789999999999999875
No 487
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=51.93 E-value=7 Score=38.41 Aligned_cols=19 Identities=37% Similarity=0.534 Sum_probs=17.4
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|+.++||||+++.+.
T Consensus 12 i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEECCTTSCHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999999875
No 488
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=51.77 E-value=7.5 Score=38.90 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=18.0
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
-++|.|+.++||||++++++
T Consensus 23 ki~vvG~~~~GKSsli~~l~ 42 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLI 42 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 37899999999999999986
No 489
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=51.72 E-value=7.2 Score=37.85 Aligned_cols=19 Identities=42% Similarity=0.445 Sum_probs=17.1
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|+.++||||+++.++
T Consensus 5 i~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEESTTSSHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 6899999999999999864
No 490
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=51.42 E-value=7.8 Score=37.55 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=17.4
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|+.++||||+++.+.
T Consensus 9 i~v~G~~~~GKssli~~l~ 27 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999998875
No 491
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=51.25 E-value=7.9 Score=40.11 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=19.6
Q ss_pred ceEEEEccCCCChhHHHHHHHHH
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLi 1050 (1162)
..++|+|+.++||||++..++-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46888999999999999988743
No 492
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=51.13 E-value=7.7 Score=38.23 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=17.5
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|+-++||||+++++.
T Consensus 15 i~v~G~~~~GKSsli~~l~ 33 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFV 33 (181)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999876
No 493
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=50.74 E-value=7.8 Score=47.44 Aligned_cols=30 Identities=27% Similarity=0.245 Sum_probs=23.7
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCC
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGA 1058 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~ 1058 (1162)
..+++|||+-++||||+.|.++- .|.+.|.
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~--~L~~~G~ 81 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEE--YLVCHGI 81 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH--HHHHTTC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHH--HHHhcCC
Confidence 46899999999999999998764 3444464
No 494
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=50.62 E-value=12 Score=45.44 Aligned_cols=45 Identities=24% Similarity=0.292 Sum_probs=38.3
Q ss_pred cccCceEEEeccCCCeEEeEEEEeecCCCCeEEEEc-cCCchhhcccC
Q 001077 104 DVLRKRIRVYWPLDKAWYEGCVKSFDKECNKHLVQY-DDGEDELLDLG 150 (1162)
Q Consensus 104 ~~vg~rv~v~wp~d~~~y~g~v~~~~~~~~~h~v~Y-ddg~~e~l~l~ 150 (1162)
.-+|.-|-+.|. |+.||.|.|.+.+. .+...|.| |-|..|.+.++
T Consensus 412 ~~~G~~c~a~~~-d~~wyRa~I~~v~~-~~~~~V~fvDyGn~e~v~~~ 457 (570)
T 3bdl_A 412 PRRGEFCIAKFV-DGEWYRARVEKVES-PAKIHVFYIDYGNREVLPST 457 (570)
T ss_dssp CCTTCEEEEECT-TSCEEEEEEEEEEE-TTEEEEEETTTCCEEEECGG
T ss_pred CCcCCEEEEEEC-CCCEEEEEEEEEcC-CCeEEEEEEeCCCeEEEEHH
Confidence 348999999999 99999999999987 56788888 88998877654
No 495
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=50.48 E-value=7.9 Score=39.24 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=17.9
Q ss_pred eEEEEccCCCChhHHHHHHH
Q 001077 1029 FILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1029 ~~IITGPNMgGKST~LRqva 1048 (1162)
-++|.|+.++||||+++.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~ 29 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYV 29 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 37899999999999999875
No 496
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=50.46 E-value=8.1 Score=37.95 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=17.6
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|+.++||||++++..
T Consensus 9 i~v~G~~~~GKssl~~~l~ 27 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFA 27 (178)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 7899999999999999876
No 497
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=50.41 E-value=8 Score=38.83 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=17.4
Q ss_pred EEEEccCCCChhHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVC 1048 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqva 1048 (1162)
++|.|+.++||||+++.++
T Consensus 28 i~v~G~~~~GKSsLi~~l~ 46 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFT 46 (193)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 7899999999999999875
No 498
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=50.11 E-value=25 Score=38.91 Aligned_cols=76 Identities=12% Similarity=0.132 Sum_probs=42.3
Q ss_pred cceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCCccccCCcceeeeecCCccchhhcccchHHHHHHHHHHHhcC--
Q 001077 1027 ASFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAEIFEISPVDRIFVRMGAKDHIMAGQSTFLTELSETALMLSSA-- 1104 (1162)
Q Consensus 1027 ~~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~~a~l~i~DrIfTRIGa~D~i~~g~STFmvEM~Eta~IL~~A-- 1104 (1162)
...++++||.+.||+|+.+.++-- +| + |.. .-.| |..+.+.+ .++=..++.++..-+...
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~-----~~--~-~~~---~~~d--~~~l~~~~-----~~~~id~ir~li~~~~~~p~ 79 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEY-----VE--K-FPP---KASD--VLEIDPEG-----ENIGIDDIRTIKDFLNYSPE 79 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHH-----HH--T-SCC---CTTT--EEEECCSS-----SCBCHHHHHHHHHHHTSCCS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh-----Cc--h-hhc---cCCC--EEEEcCCc-----CCCCHHHHHHHHHHHhhccc
Confidence 457999999999999998887641 22 1 111 1112 22334432 111122334433333322
Q ss_pred -CCCcEEEEcCCCCCCC
Q 001077 1105 -TRNSLVVLDELGRGTS 1120 (1162)
Q Consensus 1105 -T~~SLVIlDELGRGTs 1120 (1162)
..+.+|||||..+=|.
T Consensus 80 ~~~~kvviIdead~lt~ 96 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQ 96 (305)
T ss_dssp SSSSEEEEETTGGGBCH
T ss_pred cCCceEEEeccHHHhCH
Confidence 3478999999988763
No 499
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=50.02 E-value=7.7 Score=42.44 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=19.2
Q ss_pred EEEEccCCCChhHHHHHHHHH
Q 001077 1030 ILLTGPNMGGKSTLLRQVCLA 1050 (1162)
Q Consensus 1030 ~IITGPNMgGKST~LRqvaLi 1050 (1162)
++|+||.+.||||+++.++-.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 899999999999999998754
No 500
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=49.83 E-value=9.5 Score=38.96 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=23.0
Q ss_pred ceEEEEccCCCChhHHHHHHHHHHHHHHcCCcccCC
Q 001077 1028 SFILLTGPNMGGKSTLLRQVCLAVILAQVGADVPAE 1063 (1162)
Q Consensus 1028 ~~~IITGPNMgGKST~LRqvaLivILAQiG~fVPA~ 1063 (1162)
+.++|+||-++||||+.... .+-|+-+-|+
T Consensus 17 ~gvli~G~SGaGKStlal~L------~~rG~~lvaD 46 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLAL------IDRGHQLVCD 46 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHH------HHTTCEEEES
T ss_pred EEEEEEcCCCCCHHHHHHHH------HHcCCeEecC
Confidence 56999999999999986543 3468766665
Done!