Query 001078
Match_columns 1162
No_of_seqs 291 out of 1262
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 15:13:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001078.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001078hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1879 UDP-glucose:glycoprote 100.0 1E-219 3E-224 1955.9 74.5 1031 1-1130 416-1457(1470)
2 cd06432 GT8_HUGT1_C_like The C 100.0 5.3E-53 1.1E-57 465.1 21.2 248 855-1102 1-248 (248)
3 PF06427 UDP-g_GGTase: UDP-glu 100.0 2.6E-51 5.7E-56 437.5 19.6 204 529-733 2-211 (211)
4 cd00505 Glyco_transf_8 Members 100.0 1.9E-38 4.1E-43 349.9 20.2 235 855-1100 1-244 (246)
5 PRK15171 lipopolysaccharide 1, 100.0 3.1E-36 6.8E-41 345.3 19.5 234 853-1101 24-271 (334)
6 cd04194 GT8_A4GalT_like A4GalT 100.0 3E-34 6.6E-39 316.5 19.5 232 855-1100 1-246 (248)
7 cd06431 GT8_LARGE_C LARGE cata 100.0 5E-34 1.1E-38 319.3 19.2 250 855-1116 1-268 (280)
8 cd06430 GT8_like_2 GT8_like_2 100.0 9.3E-33 2E-37 308.2 22.3 263 855-1128 1-291 (304)
9 cd06429 GT8_like_1 GT8_like_1 100.0 9.5E-33 2.1E-37 305.1 17.5 227 855-1115 1-255 (257)
10 COG1442 RfaJ Lipopolysaccharid 100.0 3.9E-32 8.5E-37 306.5 19.6 239 854-1108 2-252 (325)
11 PLN02718 Probable galacturonos 100.0 2.3E-31 4.9E-36 313.4 15.5 260 851-1123 310-596 (603)
12 PLN02523 galacturonosyltransfe 100.0 6.2E-30 1.3E-34 297.9 17.6 253 853-1117 247-546 (559)
13 PLN02829 Probable galacturonos 100.0 5.4E-28 1.2E-32 284.0 15.2 259 855-1125 331-634 (639)
14 PLN02742 Probable galacturonos 99.9 2E-27 4.3E-32 277.1 16.6 260 854-1124 226-529 (534)
15 PLN02870 Probable galacturonos 99.9 9E-28 1.9E-32 279.3 13.2 261 855-1124 206-526 (533)
16 PLN02659 Probable galacturonos 99.9 1.2E-27 2.5E-32 278.4 13.6 260 855-1124 207-527 (534)
17 PF01501 Glyco_transf_8: Glyco 99.9 8.4E-28 1.8E-32 262.4 11.6 231 856-1101 1-247 (250)
18 PLN02769 Probable galacturonos 99.9 1.9E-27 4.1E-32 281.5 14.2 254 855-1118 330-618 (629)
19 PLN02867 Probable galacturonos 99.9 5.6E-27 1.2E-31 274.0 14.8 253 855-1117 211-522 (535)
20 PLN02910 polygalacturonate 4-a 99.9 2.9E-26 6.3E-31 268.9 15.3 252 854-1117 344-644 (657)
21 cd02537 GT8_Glycogenin Glycoge 99.9 7.2E-21 1.6E-25 209.6 17.6 203 857-1102 3-214 (240)
22 PLN00176 galactinol synthase 99.9 6.9E-21 1.5E-25 216.2 17.8 245 861-1125 30-301 (333)
23 cd06914 GT8_GNT1 GNT1 is a fun 99.7 1E-16 2.2E-21 178.6 16.4 207 860-1106 6-244 (278)
24 cd02515 Glyco_transf_6 Glycosy 96.7 0.043 9.4E-07 61.2 15.8 220 851-1091 32-263 (271)
25 COG5597 Alpha-N-acetylglucosam 96.6 0.0011 2.3E-08 73.9 2.0 148 930-1091 150-333 (368)
26 KOG1879 UDP-glucose:glycoprote 96.5 1.6 3.5E-05 57.3 29.0 159 192-358 335-506 (1470)
27 PF03414 Glyco_transf_6: Glyco 96.0 0.12 2.6E-06 59.4 14.6 224 851-1091 97-328 (337)
28 PF11051 Mannosyl_trans3: Mann 95.6 0.027 5.8E-07 63.9 7.4 109 857-973 4-114 (271)
29 PF03407 Nucleotid_trans: Nucl 93.1 0.21 4.5E-06 54.1 7.0 141 937-1102 54-209 (212)
30 cd03019 DsbA_DsbA DsbA family, 93.1 2.8 6E-05 43.6 15.1 144 47-228 14-158 (178)
31 PF13462 Thioredoxin_4: Thiore 90.6 9.3 0.0002 38.9 15.5 134 50-227 14-150 (162)
32 cd03023 DsbA_Com1_like DsbA fa 90.4 8.5 0.00018 38.6 14.9 136 50-227 7-143 (154)
33 cd03019 DsbA_DsbA DsbA family, 85.8 30 0.00065 35.8 15.8 143 314-476 15-157 (178)
34 PF13620 CarboxypepD_reg: Carb 85.6 3.1 6.8E-05 37.7 7.3 52 698-750 2-54 (82)
35 PF13462 Thioredoxin_4: Thiore 84.3 36 0.00077 34.6 15.3 44 314-357 12-57 (162)
36 PF13715 DUF4480: Domain of un 82.1 11 0.00023 34.8 9.4 47 698-750 2-50 (88)
37 PF01323 DSBA: DSBA-like thior 79.0 85 0.0018 32.9 16.3 159 51-225 1-180 (193)
38 PF07210 DUF1416: Protein of u 76.7 15 0.00032 34.4 8.0 55 695-751 7-61 (85)
39 PF00535 Glycos_transf_2: Glyc 72.1 24 0.00051 34.9 9.4 101 858-974 3-104 (169)
40 PF08400 phage_tail_N: Prophag 71.5 15 0.00032 37.5 7.5 58 695-752 2-64 (134)
41 KOG1948 Metalloproteinase-rela 68.2 32 0.0007 44.3 10.8 96 652-752 78-174 (1165)
42 cd00761 Glyco_tranf_GTA_type G 67.9 51 0.0011 31.5 10.6 88 867-968 9-96 (156)
43 cd06423 CESA_like CESA_like is 63.2 65 0.0014 31.7 10.5 89 867-969 9-99 (180)
44 PF05637 Glyco_transf_34: gala 62.9 8.8 0.00019 42.9 4.4 152 903-1073 34-209 (239)
45 cd03023 DsbA_Com1_like DsbA fa 60.4 1.8E+02 0.004 28.8 15.2 136 314-473 5-140 (154)
46 PF13743 Thioredoxin_5: Thiore 60.3 1.4E+02 0.003 31.7 12.7 148 54-220 2-155 (176)
47 PF03452 Anp1: Anp1; InterPro 58.7 96 0.0021 35.5 11.6 133 851-986 23-177 (269)
48 cd03025 DsbA_FrnE_like DsbA fa 53.5 2.4E+02 0.0053 29.5 13.3 156 51-220 2-176 (193)
49 cd04196 GT_2_like_d Subfamily 53.5 1.3E+02 0.0028 31.5 11.3 93 867-972 10-103 (214)
50 PF04765 DUF616: Protein of un 51.7 26 0.00055 40.6 5.7 122 851-984 62-189 (305)
51 PRK11204 N-glycosyltransferase 47.4 1.4E+02 0.0031 35.7 11.5 102 853-971 54-157 (420)
52 cd04187 DPM1_like_bac Bacteria 46.3 2.1E+02 0.0046 29.3 11.3 146 868-1028 10-163 (181)
53 cd06439 CESA_like_1 CESA_like_ 45.2 2.2E+02 0.0047 31.0 11.8 100 855-972 31-133 (251)
54 PRK10954 periplasmic protein d 44.5 3.2E+02 0.007 29.5 12.8 45 181-226 136-180 (207)
55 cd04186 GT_2_like_c Subfamily 44.5 1.8E+02 0.004 28.7 10.2 89 867-972 9-98 (166)
56 cd04185 GT_2_like_b Subfamily 41.3 1.5E+02 0.0033 31.0 9.4 94 867-972 9-103 (202)
57 PRK10954 periplasmic protein d 41.3 97 0.0021 33.6 8.1 54 416-474 126-179 (207)
58 cd03022 DsbA_HCCA_Iso DsbA fam 38.7 1.6E+02 0.0035 30.8 9.1 98 118-228 85-182 (192)
59 cd02520 Glucosylceramide_synth 38.5 2.4E+02 0.0053 29.6 10.5 95 866-971 12-109 (196)
60 PRK05454 glucosyltransferase M 36.1 2.9E+02 0.0063 35.9 12.2 121 853-983 124-255 (691)
61 PRK14583 hmsR N-glycosyltransf 35.7 3.5E+02 0.0076 32.9 12.5 102 853-971 75-178 (444)
62 cd06420 GT2_Chondriotin_Pol_N 35.2 4.2E+02 0.0092 26.9 11.5 94 867-972 9-103 (182)
63 cd03863 M14_CPD_II The second 34.8 1E+02 0.0022 37.0 7.4 51 695-750 296-347 (375)
64 cd06435 CESA_NdvC_like NdvC_li 34.0 3.5E+02 0.0075 29.1 11.0 104 867-982 11-117 (236)
65 PRK06437 hypothetical protein; 33.0 38 0.00083 30.2 2.7 22 453-474 26-47 (67)
66 PRK15036 hydroxyisourate hydro 32.7 86 0.0019 32.2 5.5 54 697-750 28-89 (137)
67 PF10111 Glyco_tranf_2_2: Glyc 31.6 4.5E+02 0.0097 29.8 11.8 150 869-1030 18-186 (281)
68 cd03866 M14_CPM Peptidase M14 31.1 94 0.002 37.2 6.4 53 695-750 294-346 (376)
69 PLN03182 xyloglucan 6-xylosylt 30.9 2.5E+02 0.0055 33.9 9.5 124 946-1093 195-358 (429)
70 cd06245 M14_CPD_III The third 29.6 1.7E+02 0.0036 35.0 8.0 50 695-750 286-335 (363)
71 cd04190 Chitin_synth_C C-termi 28.3 1.7E+02 0.0037 32.3 7.5 75 868-971 11-96 (244)
72 cd02514 GT13_GLCNAC-TI GT13_GL 28.1 3.1E+02 0.0067 32.4 9.8 108 855-970 2-118 (334)
73 PF13641 Glyco_tranf_2_3: Glyc 27.2 67 0.0015 34.4 4.0 106 855-972 3-110 (228)
74 PLN03181 glycosyltransferase; 26.5 3E+02 0.0066 33.4 9.2 18 946-964 196-213 (453)
75 cd04192 GT_2_like_e Subfamily 26.1 3.5E+02 0.0075 28.5 9.3 95 866-971 8-105 (229)
76 cd04191 Glucan_BSP_ModH Glucan 25.3 5.5E+02 0.012 28.9 10.9 104 870-983 15-130 (254)
77 KOG1928 Alpha-1,4-N-acetylgluc 25.1 34 0.00074 40.5 1.2 18 954-971 242-259 (409)
78 cd04195 GT2_AmsE_like GT2_AmsE 25.0 6.4E+02 0.014 26.1 10.9 89 868-971 13-103 (201)
79 PF12633 Adenyl_cycl_N: Adenyl 24.6 94 0.002 34.1 4.4 52 874-926 106-165 (204)
80 cd06421 CESA_CelA_like CESA_Ce 24.0 8.2E+02 0.018 25.8 11.7 100 856-971 4-107 (234)
81 PF03666 NPR3: Nitrogen Permea 24.0 4E+02 0.0086 32.9 10.0 34 184-221 187-220 (452)
82 PRK10877 protein disulfide iso 23.9 5E+02 0.011 28.9 10.1 39 49-87 108-146 (232)
83 cd06434 GT2_HAS Hyaluronan syn 22.9 7.5E+02 0.016 26.3 11.2 97 856-972 3-101 (235)
84 PF03071 GNT-I: GNT-I family; 22.4 3.2E+02 0.0069 33.5 8.6 114 851-970 91-212 (434)
85 cd02525 Succinoglycan_BP_ExoA 20.8 9.4E+02 0.02 25.5 11.5 99 857-972 4-105 (249)
86 PF05738 Cna_B: Cna protein B- 20.6 1.3E+02 0.0027 26.4 3.7 40 711-750 2-43 (70)
87 cd06427 CESA_like_2 CESA_like_ 20.4 6.8E+02 0.015 27.2 10.3 93 865-971 11-107 (241)
88 cd06436 GlcNAc-1-P_transferase 20.2 9.1E+02 0.02 25.2 10.9 96 865-966 7-106 (191)
89 COG0463 WcaA Glycosyltransfera 20.1 5.3E+02 0.012 25.3 8.7 46 864-909 12-57 (291)
No 1
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-219 Score=1955.89 Aligned_cols=1031 Identities=46% Similarity=0.766 Sum_probs=912.5
Q ss_pred CceeeccCCCeeEeccccCchhhhhchhhHHHhhccCCCCCccccccccccEEEEEcCCCcchHHHHHHHHHHHhcccce
Q 001078 1 MFRVDFRSTHVQYLNNLEEDAMYKRWRSNINEILMPVFPGQLRYIRKNLFHAVYVLDPATVCGLEVIDMIMSLYENHFPL 80 (1162)
Q Consensus 1 ~~r~D~rd~~IiwlNDLEkD~rY~~wp~sL~~LLrp~~pGqlp~VRRNl~nlV~vvDps~~~~l~~l~~i~~~~~~~iPv 80 (1162)
.|++|+|+.+|+|+||||+|++|.+||+|+++||+|+||||+|+||||+||+||||||+++++++++..+.+|+.|++|+
T Consensus 416 ~~~~Dir~~~v~~vNdlEsD~~Y~~w~~Svq~lL~P~~PG~lr~IrkNl~nlV~vIDpa~~~~~~~l~~~~~f~s~~~P~ 495 (1470)
T KOG1879|consen 416 EYAVDIRSEAVIWVNDLESDPQYDRWPSSVQLLLKPTFPGQLRPIRKNLFNLVFVIDPATPEDLEFLKTARNFVSHQIPV 495 (1470)
T ss_pred ceeeecccccceeecccccchhhcchhHHHHHHhCCCCCCcchHHHhhheeEEEEecCCCccchHHHHHHHHHhcCCCce
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeecccccchhccCCCCCCCCccCCCCCCCchHHHHHHHHHHHHHhhChHHHHHHHHHHHHhhhccCCCCCCchh
Q 001078 81 RFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLFLFIKESHGTQTAFQFLSNVNRLRMESADSADDDAL 160 (1162)
Q Consensus 81 R~GlVp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~s~~~ar~f~~i~~~~g~~~Al~FL~~~~~~~~~~~~~~~~~~~ 160 (1162)
|+|+||+.++ . +.++..|.|+++.|+|+||.+..|...||.||.+++...+. ...+
T Consensus 496 R~G~v~~~nd----~--------------~~d~~~d~g~av~~af~yi~~~~d~~~Alk~l~~~~~~~~~------~~~~ 551 (1470)
T KOG1879|consen 496 RIGFVFIAND----D--------------DEDGVTDLGVAVLRAFNYISEESDNLTALKFLTNIYSDVRS------DEYV 551 (1470)
T ss_pred EEEEEEEecC----C--------------cccchhhHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhcc------cchh
Confidence 9999999886 1 12345699999999999999999999999999999766543 3445
Q ss_pred hhhhHHhHhHhhccCCCCCCChhhhhhhhcccchhhhHHHHHHHHHHhCCCcCCceeeEeceeccCch------HHHHHH
Q 001078 161 EIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFVFKLGLTKLKCCLLMNGLVSESSE------EALLNA 234 (1162)
Q Consensus 161 ~~~~v~~af~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~f~~Rlgl~~~~p~vlvNGv~~~~~~------~~~~~~ 234 (1162)
.+++++..|.+++ +. ....+.++.++.||..++++..|+.++|+ +..|+|++||++++.++ +++++.
T Consensus 552 ~~e~v~~~~~~~~-~~-----~~~~~il~~~s~~d~~~~~~~~fv~~lGl-~~~p~vL~NG~i~~~~~~~~~~e~~i~~~ 624 (1470)
T KOG1879|consen 552 LVEHVKGVFENTL-PN-----AKKDDILGIDSTYDEGRKAGFSFVQELGL-DSLPSVLLNGEIFDHESNAWDLEESILQE 624 (1470)
T ss_pred HHHhhhHHHHhhc-cc-----cchhhhhccccchhhcchHHHHHHHHhCC-CccCeeeECCeeccccccccchHHHHHHH
Confidence 5888898886633 22 22346778899999999999999999999 55899999999999554 599999
Q ss_pred HHHHHHHHHHHHHccccCCcchHHHHHHhc-ccccccCceeccCCCCCCeEeecccccccchhhhhcCccccCCCCCCCC
Q 001078 235 MNDELQRIQEQVYYGNINSYTDVLEKVLSE-SGINRYNPQIITDAKVKPKFISLASSFLGRETELKDINYLHSPETVDDV 313 (1162)
Q Consensus 235 l~~e~~~lQ~~Vy~G~l~d~~dv~~~~L~~-na~~RrN~~I~p~~~~~~~~~~l~~~~~~~~~l~~~~~y~~~~~~~~~~ 313 (1162)
|++++++||+|||.|+++|++++++++|.+ ++++|.|++|++..+....+..+....++.+.+++++.|++++ +++..
T Consensus 625 i~~~t~~iQ~av~~G~l~d~~~~~d~ll~~~~v~~R~N~~i~~~~~~~~~v~s~l~~~~k~~~~~~~~~Yl~~~-~~~~~ 703 (1470)
T KOG1879|consen 625 IMKDTPFIQRAVYEGKLEDDQNVVDFLLEQKSVLPRINKRILSGSKFLDSVVSILSSTDKSAVLLKNVNYLTKK-TEESN 703 (1470)
T ss_pred HHhhhHHHHHHHHcCCCccchHHHHHHHhCccccccccccccccccchhhHHhhhcchhhhhHHHhhccccccC-chhhc
Confidence 999999999999999999999999999999 9999999999984333333444334446778899999999886 56678
Q ss_pred CceEEEEEeeCCChhhHHHHHHHHHHHhcCCCceEEEEEecCCCCCCCchhHHHHHHHHHhhcccchhhHHHHHHHHhhh
Q 001078 314 KPVTHLLAVDVTSKKGMKLLHEGIRFLIGGSNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQLCSF 393 (1162)
Q Consensus 314 ~~~t~wvv~D~~~~~g~~l~~~al~~l~~~~~~~Rv~~v~n~~~~~~~~~~~~~~~i~aa~~~~~~~~~~~~~l~~l~~~ 393 (1162)
.++|+|+|+||++++||+++.+|+++++ ++.++||++|.||++.......++.+.|+|++.++.. ++.++
T Consensus 704 ~~vT~wlvaDf~~~~grklL~~al~~~~-~s~~~Ri~~I~np~s~~~~~~~s~~~~i~aal~~~~~---------~l~~e 773 (1470)
T KOG1879|consen 704 LPVTIWLVADFESPSGRKLLTNALDYLK-SSKNARIGLIPNPSSESAEGSNSIKRPILAALLFLPA---------KLAKE 773 (1470)
T ss_pred cceEEEEEcccCChhHHHHHHHHHHHHh-ccccceEEEecCchhhhhcccccccchHHHHHhcCcH---------hhhHH
Confidence 8899999999999999999999999984 5889999999999986566667888999998877662 22221
Q ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhcCCChHhHhhccCccchhhHHHHHHHHHHHHHHHhCCCCCCcEEEEcCEEe
Q 001078 394 YERTYLLASSATADSTQAFIDKVCEFAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNGRVT 473 (1162)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~NGR~i 473 (1162)
.....+.. +.. . ..++. ..+++|+.++..... ..++.+|++.+|+.+|+++|+.|||+|
T Consensus 774 ~~~~~~~~----~~~-~-----------~~~i~-s~~e~~~~~~~~~l~----~~~~~~~~~vl~l~~~q~~Vv~Ngr~i 832 (1470)
T KOG1879|consen 774 EVASHLYK----GKN-S-----------DLSIG-SKFEKDLEKLLLFLK----KLHSFIVKEVLGLNSGQRAVVSNGRFI 832 (1470)
T ss_pred HHHHHhhc----Ccc-c-----------ccchh-HHHHHhhhhhhhhHH----hhhhHHHHhhhccCCCcceeeecCeEE
Confidence 11111110 000 0 00111 345566655443322 356788999999999999999999999
Q ss_pred -cCCCCCCCChhhHHHHHHHHHHhhhHHHHHHHHHhcccCCCCCCCcccccchhhhhhhhhhhcccccccCCcccccccc
Q 001078 474 -FPIDESTFLSHDLSLLESVEFKHRIKHIWEIIEEVNWQETYPDIDPDMLTSKFVSDIILFVTSSMAMRDRSSESARFEI 552 (1162)
Q Consensus 474 -~~~~~~~~~~~d~~~l~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (1162)
++..++.|..+||.+|++++..+..++|.++++... ..+.....++..|++.+......+...+.++..
T Consensus 833 gpl~~~E~f~t~Df~lLe~~~~~~~~~ki~~~~~~~~----------~~v~~~~~sd~~~~v~~~~~t~~~s~~r~~~~~ 902 (1470)
T KOG1879|consen 833 GPLSSSESFNTADFKLLESMLFSNYSQKISNIIEESE----------LDVSEDVFSDFLMKVAALMSTQDKSRPRMDFSF 902 (1470)
T ss_pred EeccchhhhchhhHHHHHHHhccccchhHHHHHHHhh----------hcchhhhhhhhhhhhhcccccCCccccccchhh
Confidence 666579999999999999999999999998887643 122345567888888886666666666778888
Q ss_pred cccccceEEeCC--CCceEEEEEEecCCCcchhhHHHHHHHHhccCCCeEEEEEccCCCCCccCcceeeecccCCCcCCC
Q 001078 553 LSAEYSAVVFNS--ENSTIHIDAVIDPLSPTGQKLSSLLRVLQRYAQPSMRIVLNPMSSLVDIPLKNYYRYVVPTMDDFS 630 (1162)
Q Consensus 553 ~~~~~~~~~~~~--~~~~~~v~~ivDPlse~aQk~~~ll~~l~~~~~v~i~i~lnp~~~l~~~P~krfYr~v~~~~~~F~ 630 (1162)
++.+|+++.+++ ..+.|+|+||+||||++||||+|||.+|+++.+++|||+|||+.+++|||||||||||+++++.|+
T Consensus 903 ~~~~~s~v~~~~~~~~a~idv~aVlDPlsreaQkl~sll~~l~kl~n~~i~i~lnP~~~lse~PlkrfYRyV~~~e~~f~ 982 (1470)
T KOG1879|consen 903 LKDEHSVVKFPPDENNATIDVLAVLDPLSREAQKLASLLEVLRKLTNVNIRIILNPKSKLSEMPLKRFYRYVLEAELSFS 982 (1470)
T ss_pred hcCCCceeecCCCCCCceEEEEEEecCCCHHHHHHHHHHHHHHHhcCcceEEEEcCchhhhhccHHHHHHhhcCcccccc
Confidence 899999999865 456799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCceeeccCCCCCceEEeccCCCCeEEeeecccccCCcccccccCCCcceEEEEEeeeEEEEEEeccCCC-CC
Q 001078 631 NTDYSISGPKAFFANMPLSKTLTMNLDVPEPWLVEPVIAVHDLDNILLEKLGDTRTLQAVFELEALVLTGHCSEKDH-EP 709 (1162)
Q Consensus 631 ~~~~~~~~~~a~F~~lp~~~~~t~~~d~P~~w~v~~~~~~~DldNi~l~~~~~~~~~~a~y~L~~ilieG~~~d~~~-~~ 709 (1162)
++|....+ .|+|.+||.++|+|++|++|++|+|+++.+.||||||+|++.+ ++|+|+||||+||+||||+|..+ +|
T Consensus 983 ~~g~~~~~-~a~F~nlP~~~lltm~l~~pesWlVe~v~a~~DLdNI~Le~~~--~~v~A~yele~lLleG~c~d~~~g~p 1059 (1470)
T KOG1879|consen 983 ANGSDSDG-VAKFDNLPASPLLTMNLDVPESWLVEAVRAIYDLDNIKLEDTS--SDVTAEYELEYLLLEGHCFDKVSGQP 1059 (1470)
T ss_pred cCCccccc-eeeecCCCcCceeEEeecCCCceEeeeccccccchheeeeccC--CchheeeehhhhhccceehhhccCCC
Confidence 99988877 8999999999999999999999999999999999999999985 48999999999999999999987 99
Q ss_pred CCceEEEEecCCCCcccceEEEecceeeeeeeCCceeEEEecCCCCccceEEeecCCCCcCCCCccEEEEecCCCceEEE
Q 001078 710 PQGLQLILGTKSTPHLVDTLVMANLGYWQMKVSPGVWYLQLAPGRSSELYVLKEDGNVNEDRSLSKRITINDLRGKVVHM 789 (1162)
Q Consensus 710 p~Glql~L~~~~~~~~~dT~vM~nlGYfQlka~pG~~~l~l~~Grs~~~y~i~~~~~~~~~~~~~~~v~v~sf~~~~i~~ 789 (1162)
||||||+|||.++|+++|||||+||||||||||||+|.|+||+|||+++|.|.++.+.. +..+...|.|+||+|++|.|
T Consensus 1060 prGlql~Lgt~~~p~i~DTiVManlGYfQlKanPG~W~L~lr~G~S~d~y~i~s~dg~~-~~~~~~qvvidSf~gk~v~v 1138 (1470)
T KOG1879|consen 1060 PRGLQLTLGTSANPHIVDTIVMANLGYFQLKANPGAWILRLRDGRSSDIYQIVSHDGTP-DQSSDIQVVIDSFRGKVVKV 1138 (1470)
T ss_pred CCceEEEeccCCCCeeeeeEEEeccceeEEecCCcceEEEecCCCchhheeeecccCCC-CcCCCceEEEecCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999855443 33678899999999999999
Q ss_pred EEEecCCccccccccCCcccccccccCCccccccccccccccCCcccchhhhhcccCcccccCCeeEEEEEecCcchHHH
Q 001078 790 EVVKKKGKENEKLLVSSDEDSHSQAEGHWNSNFLKWASGFIGGSEQSKKEKAAVDHGKVERHGKTINIFSIASGHLYERF 869 (1162)
Q Consensus 790 ~v~k~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~InIf~vasg~~Y~~~ 869 (1162)
+|+|+||||++++|.+. .+.|.|+|+. +|.|+..+. .+++.++||||+||+||+|||+
T Consensus 1139 kV~k~~g~e~edll~~~------~~~g~wns~k-----~f~~~~~~~-----------~~~~~~vINIFSvASGHLYERf 1196 (1470)
T KOG1879|consen 1139 KVSKKPGMEEEDLLSDE------KEEGFWNSIK-----SFTGGLAKS-----------MKKDKEVINIFSVASGHLYERF 1196 (1470)
T ss_pred EEeecCCcchhhhhcch------hhhhhhhhhh-----hhccccccc-----------ccCccceEEEEeeccccHHHHH
Confidence 99999999999999872 1358899943 333322111 1223468999999999999999
Q ss_pred HHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCcccccccccccHHHHHHHHhhcccCCCC
Q 001078 870 LKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIFPLS 949 (1162)
Q Consensus 870 l~v~I~SIl~nt~~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r~~~~Y~RLfL~~lfP~~ 949 (1162)
+.+||.||++||+++||||+|.++|||.|++.|++|+++|+|++++++|+||+|||+|+++||++|+|++||||+|||.+
T Consensus 1197 lrIMm~SvlknTktpVKFWfLkNyLSPtFKe~iP~mA~eYnFeyElv~YkWPrWLhqQ~EKQRiiWgyKILFLDVLFPL~ 1276 (1470)
T KOG1879|consen 1197 LRIMMLSVLKNTKTPVKFWFLKNYLSPTFKESIPHMAKEYNFEYELVQYKWPRWLHQQTEKQRIIWGYKILFLDVLFPLN 1276 (1470)
T ss_pred HHHHHHHHHhCCCCceeEEeehhhcChHHHHHHHHHHHHhCceEEEEEecCchhhhhhhhhhhhhhhhhhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCeeecCCchHHHhcCCCCCeEEEeeccCCCCCCCCcccccchhhhhhcCCCCeeeeeeeeEehHHHHHhcH
Q 001078 950 LEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHISALYVVDLKRFRETAA 1029 (1162)
Q Consensus 950 vdrVLYLDaD~IV~~DL~eL~~~Dl~g~~~Aav~d~~~~~~~~g~~~w~~gyw~~~L~~~~YfNSGV~liNL~~~R~~~~ 1029 (1162)
++||||+|||+|||+||.||+++|++|+|||++|+|+++++|+||||||+|||++||.+++||+|++|||||+|||+.++
T Consensus 1277 v~KvIfVDADQIVR~DL~EL~dfdl~GaPygYtPfCdsR~EMDGyRFWK~GYW~~hL~grkYHISALYVVDLkrFReiaA 1356 (1470)
T KOG1879|consen 1277 VDKVIFVDADQIVRADLKELMDFDLGGAPYGYTPFCDSRREMDGYRFWKQGYWKKHLRGRKYHISALYVVDLKRFREIAA 1356 (1470)
T ss_pred cceEEEEcchHhhhhhhHHHHhcccCCCccccCccccccccccchhHHhhhHHHHHhccCccccceeeeeeHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCChhhhccccCceeecCCccccccCCCCccccCCCeEEeccCCCCCCChhhHhhhccc
Q 001078 1030 GDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQEWLWCESWCGNATKSKAKTIDLCNNPMTKEPKLQGARRIV 1109 (1162)
Q Consensus 1030 ~dkl~~~~~~ls~~~~sl~~~DQDllN~~~~~~~I~~Lp~~wN~~~~~~~~e~~~~akiI~~~~np~tk~~kl~~a~r~~ 1109 (1162)
||++|.+||.||+||+||+|+||||+|+|++++||++||++|.||+|||+++++++|||||+||||+||||||++|+|++
T Consensus 1357 GDrLR~qYQ~LS~DPNSLsNLDQDLPNnm~hqVpIkSLPqeWLWCETWC~d~skkkAktIDLCnNP~TKEpKL~~A~Riv 1436 (1470)
T KOG1879|consen 1357 GDRLRGQYQALSQDPNSLSNLDQDLPNNMQHQVPIKSLPQEWLWCETWCDDESKKKAKTIDLCNNPLTKEPKLDAARRIV 1436 (1470)
T ss_pred chHHHHHHHhhcCCcchhhhccccccccceeecccccCCcchhhhhhhcCchhhhhchhhhhhcCccccchhhHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhhHHHHHHHHHhcCcc
Q 001078 1110 SEWPDLDSEARQFTAKILGEE 1130 (1162)
Q Consensus 1110 ~~w~~~d~~~~~~~~~~~~~~ 1130 (1162)
+||.+||.|+++++.++..+.
T Consensus 1437 ~EW~dyD~Ei~~v~s~~~~~~ 1457 (1470)
T KOG1879|consen 1437 SEWTDYDAEIRSVLSKAQDED 1457 (1470)
T ss_pred CCCcccchHHHHHHHHhhccC
Confidence 999999999999999998776
No 2
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=100.00 E-value=5.3e-53 Score=465.07 Aligned_cols=248 Identities=78% Similarity=1.420 Sum_probs=232.7
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCcccccccccccHH
Q 001078 855 INIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRII 934 (1162)
Q Consensus 855 InIf~vasg~~Y~~~l~v~I~SIl~nt~~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r~~ 934 (1162)
||||++++|..|..++++||+||+.|++.+++|||+++++|+++++.|+++.++++++++|+.++||.|++.+....+..
T Consensus 1 ini~~~~~~~~y~~~~~v~l~Sll~nn~~~~~fyil~~~is~e~~~~l~~~~~~~~~~i~~i~i~~~~~~~~~~~~~~~~ 80 (248)
T cd06432 1 INIFSVASGHLYERFLRIMMLSVMKNTKSPVKFWFIKNFLSPQFKEFLPEMAKEYGFEYELVTYKWPRWLHKQTEKQRII 80 (248)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHHHcCCCCEEEEEEeCCCCHHHHHHHHHHHHHhCCceEEEEecChhhhhcccccchhH
Confidence 79999999999999999999999999977899999999999999999999999999999999999999988776655556
Q ss_pred HHHHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHhcCCCCCeEEEeeccCCCCCCCCcccccchhhhhhcCCCCeeee
Q 001078 935 WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHIS 1014 (1162)
Q Consensus 935 ~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~Dl~g~~~Aav~d~~~~~~~~g~~~w~~gyw~~~L~~~~YfNS 1014 (1162)
++|+||+++.+||++++||||||+|+||++||++||++||+|+++||++||....++.+.++|+++||++.+.++.||||
T Consensus 81 ~~y~rL~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~~dl~~~~~Aav~d~~~~~~~~~~~~~~~~~~~~~l~~~~YfNS 160 (248)
T cd06432 81 WGYKILFLDVLFPLNVDKVIFVDADQIVRTDLKELMDMDLKGAPYGYTPFCDSRKEMDGFRFWKQGYWKSHLRGRPYHIS 160 (248)
T ss_pred HHHHHHHHHHhhhhccCEEEEEcCCceecccHHHHHhcCcCCCeEEEeeccccchhcccchhhhhhhhhhhcCCCCccce
Confidence 89999999999998999999999999999999999999999999999999986555667789999999888877789999
Q ss_pred eeeeEehHHHHHhcHHHHHHHHHHHhccCCCCCCCCCCChhhhccccCceeecCCccccccCCCCccccCCCeEEeccCC
Q 001078 1015 ALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQEWLWCESWCGNATKSKAKTIDLCNN 1094 (1162)
Q Consensus 1015 GV~liNL~~~R~~~~~dkl~~~~~~ls~~~~sl~~~DQDllN~~~~~~~I~~Lp~~wN~~~~~~~~e~~~~akiI~~~~n 1094 (1162)
|||||||++||+++++++++++++.++.++.++.++|||+||.++.+.++..||++||||+.||.++.+++|+|||||+|
T Consensus 161 GVmliNL~~wR~~~i~~~~~~~~~~l~~~~~~l~~~DQDiLN~v~~~~~i~~Lp~~w~~~~~~~~~~~~~~~~~~~~~~~ 240 (248)
T cd06432 161 ALYVVDLKRFRRIAAGDRLRGQYQQLSQDPNSLANLDQDLPNNMQHQVPIFSLPQEWLWCETWCSDESKKKAKTIDLCNN 240 (248)
T ss_pred eeEEEeHHHHHHHhHHHHHHHHHHHHhcCCCccccCCchhhHHHhccCCeEECChHHHHHHHHhcccccCccceeecccC
Confidence 99999999999999999999999988888888999999999999987679999999999999999999999999999999
Q ss_pred CCCCChhh
Q 001078 1095 PMTKEPKL 1102 (1162)
Q Consensus 1095 p~tk~~kl 1102 (1162)
|++|||++
T Consensus 241 ~~~~~~~~ 248 (248)
T cd06432 241 PLTKEPKL 248 (248)
T ss_pred CCCCCCCC
Confidence 99999974
No 3
>PF06427 UDP-g_GGTase: UDP-glucose:Glycoprotein Glucosyltransferase; InterPro: IPR009448 The N-terminal region of this group of proteins is required for correct folding of the ER UDP-Glc: glucosyltransferase. These proteins selectively reglucosylates unfolded glycoproteins, thus providing quality control for protein transport out of the ER. Unfolded, denatured glycoproteins are substantially better substrates for glucosylation by this enzyme than are the corresponding native proteins. This protein and transient glucosylation may be involved in monitoring and/or assisting the folding and assembly of newly made glycoproteins, in order to identify glycoproteins that need assistance in folding from chaperones; GO: 0003980 UDP-glucose:glycoprotein glucosyltransferase activity, 0006486 protein glycosylation
Probab=100.00 E-value=2.6e-51 Score=437.46 Aligned_cols=204 Identities=46% Similarity=0.743 Sum_probs=183.0
Q ss_pred hhhhhhhcccccccCCc--ccccccccccccceEEeC---CCCceEEEEEEecCCCcchhhHHHHHHHHhccCCCeEEEE
Q 001078 529 DIILFVTSSMAMRDRSS--ESARFEILSAEYSAVVFN---SENSTIHIDAVIDPLSPTGQKLSSLLRVLQRYAQPSMRIV 603 (1162)
Q Consensus 529 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~v~~ivDPlse~aQk~~~ll~~l~~~~~v~i~i~ 603 (1162)
|..|..++........+ ++.++..++..++.+.++ ++.+.++|++||||+||.||||++||+.|+++.+|+|+|+
T Consensus 2 D~~~~~~s~l~~~~~~~~~r~~~~~~~~~~~s~~~~~~~~~~~~~i~v~~vvDPlse~aQkl~sll~~l~~~~~v~i~i~ 81 (211)
T PF06427_consen 2 DWFMLVSSLLSSSFHRDSSRVDRFDFLSDNHSSFEVGPKDNDESPIDVVAVVDPLSEEAQKLASLLSVLSELPFVNIRIL 81 (211)
T ss_pred cEEEEeeeeeeccccCccceeeehhccCCCceEEEecCCCCCCccEEEEEEECCCCHHHHHHHHHHHHHHhccCceEEEE
Confidence 44556666554443333 234557788888888875 3456899999999999999999999999999999999999
Q ss_pred EccCCCCCccCcceeeecccCCCcCCCCCCccccCCceeeccCCCCCceEEeccCCCCeEEeeecccccCCcccccccCC
Q 001078 604 LNPMSSLVDIPLKNYYRYVVPTMDDFSNTDYSISGPKAFFANMPLSKTLTMNLDVPEPWLVEPVIAVHDLDNILLEKLGD 683 (1162)
Q Consensus 604 lnp~~~l~~~P~krfYr~v~~~~~~F~~~~~~~~~~~a~F~~lp~~~~~t~~~d~P~~w~v~~~~~~~DldNi~l~~~~~ 683 (1162)
|||+.+++|+|||||||||+++++.|+++|.++. |.|.|++||.+++||++||+|++|+|++++|.||||||+|+++++
T Consensus 82 LnP~~~~~elPlkrFYR~v~~~~~~F~~~G~~~~-p~a~F~~lP~~~llTl~~d~P~sW~V~~~~a~~DLDNI~l~~~~~ 160 (211)
T PF06427_consen 82 LNPTSKLSELPLKRFYRYVLPSEPQFDADGRLIP-PSAVFSNLPSSPLLTLGMDVPESWLVEPKEAVYDLDNIKLSDLSS 160 (211)
T ss_pred ECCccccCcceeeeEEeecCCcccccCCCCCccC-ceeEEecCcCCceEEecCCCCCceEEEEeecCcCCCceecccCCC
Confidence 9999999999999999999999999999999886 999999999999999999999999999999999999999999975
Q ss_pred CcceEEEEEeeeEEEEEEeccCCC-CCCCceEEEEecCCCCcccceEEEec
Q 001078 684 TRTLQAVFELEALVLTGHCSEKDH-EPPQGLQLILGTKSTPHLVDTLVMAN 733 (1162)
Q Consensus 684 ~~~~~a~y~L~~ilieG~~~d~~~-~~p~Glql~L~~~~~~~~~dT~vM~n 733 (1162)
+..++|+||||||||||||+|.++ .|||||||+|++..++...|||||+|
T Consensus 161 ~~~v~a~y~Le~iLieG~~~d~~~~~pp~Glql~L~~~~~~~~~DTiVMaN 211 (211)
T PF06427_consen 161 GTTVEAVYELESILIEGHARDITTGSPPRGLQLQLGTENGPHSVDTIVMAN 211 (211)
T ss_pred CceEEEEEEEeeEEEEeEEeecCCCCCCCCcEEEEecCCCCcccCceEeCC
Confidence 446999999999999999999987 89999999999999999999999998
No 4
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=100.00 E-value=1.9e-38 Score=349.89 Aligned_cols=235 Identities=29% Similarity=0.397 Sum_probs=194.0
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCcccccccc-cccH
Q 001078 855 INIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKE-KQRI 933 (1162)
Q Consensus 855 InIf~vasg~~Y~~~l~v~I~SIl~nt~~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~-~~r~ 933 (1162)
|||+++|+|++|.++++++++||++|++.+++|||+++++|++.++.|..+.+.+++.++|+.++++.+...+.. +...
T Consensus 1 ~~i~~~a~d~~y~~~~~v~i~Sl~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (246)
T cd00505 1 IAIVIVATGDEYLRGAIVLMKSVLRHRTKPLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILDSVDSEHLKRPIK 80 (246)
T ss_pred CeEEEEecCcchhHHHHHHHHHHHHhCCCCeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccccCcchhhhhcCccc
Confidence 799999999999999999999999999889999999999999999999999888899999999998766544332 2233
Q ss_pred HHHHHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHhcCCCCCeEEEeeccCCCCCCCCcccccchhhhhhcCCCCeee
Q 001078 934 IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHI 1013 (1162)
Q Consensus 934 ~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~Dl~g~~~Aav~d~~~~~~~~g~~~w~~gyw~~~L~~~~YfN 1013 (1162)
.++|+||++|.+|| +++||||||+|+||++||++||++|++++++|||+||.......+++ +|.....+.+|||
T Consensus 81 ~~~y~RL~i~~llp-~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~~~~~~~~~~~-----~~~~~~~~~~yfN 154 (246)
T cd00505 81 IVTLTKLHLPNLVP-DYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDPGDRREGKYYR-----QKRSHLAGPDYFN 154 (246)
T ss_pred cceeHHHHHHHHhh-ccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCchhhhccchhh-----cccCCCCCCCcee
Confidence 58999999999999 89999999999999999999999999999999999986432212211 1222234568999
Q ss_pred eeeeeEehHHHHHhcHHHHHHHHHHHhccCCCCCCCCCCChhhhccccC--ceeecCCccccccCCCCcc------ccCC
Q 001078 1014 SALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTV--PIFSLPQEWLWCESWCGNA------TKSK 1085 (1162)
Q Consensus 1014 SGV~liNL~~~R~~~~~dkl~~~~~~ls~~~~sl~~~DQDllN~~~~~~--~I~~Lp~~wN~~~~~~~~e------~~~~ 1085 (1162)
|||||||+++||+++..+++...+. ....++.++|||+||.+|.+. ++..||++||++.+++... ....
T Consensus 155 sGVmlinl~~~r~~~~~~~~~~~~~---~~~~~~~~~DQd~LN~~~~~~~~~i~~L~~~wN~~~~~~~~~~~~~~~~~~~ 231 (246)
T cd00505 155 SGVFVVNLSKERRNQLLKVALEKWL---QSLSSLSGGDQDLLNTFFKQVPFIVKSLPCIWNVRLTGCYRSLNCFKAFVKN 231 (246)
T ss_pred eeeEEEechHHHHHHHHHHHHHHHH---hhcccCccCCcHHHHHHHhcCCCeEEECCCeeeEEecCccccccchhhhcCC
Confidence 9999999999998877777666544 233568889999999999863 3999999999998876432 4678
Q ss_pred CeEEeccCCCCCCCh
Q 001078 1086 AKTIDLCNNPMTKEP 1100 (1162)
Q Consensus 1086 akiI~~~~np~tk~~ 1100 (1162)
+++||||++ +|+|
T Consensus 232 ~~iiHy~g~--~KPW 244 (246)
T cd00505 232 AKVIHFNGP--TKPW 244 (246)
T ss_pred CEEEEeCCC--CCCC
Confidence 999999986 4666
No 5
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=3.1e-36 Score=345.32 Aligned_cols=234 Identities=17% Similarity=0.192 Sum_probs=186.3
Q ss_pred CeeEEEEEecCcchHHHHHHHHHHHHHcCCC-CeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCcccccccccc
Q 001078 853 KTINIFSIASGHLYERFLKIMILSVLKNTCR-PVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQ 931 (1162)
Q Consensus 853 ~~InIf~vasg~~Y~~~l~v~I~SIl~nt~~-~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~ 931 (1162)
.+|||+++ +|.+|..+++++|+||+.|+++ .++|||+++++|+++++.|..+++.++.++.++.++ +.++.......
T Consensus 24 ~~i~Iv~~-~D~ny~~~~~vsi~Sil~nn~~~~~~f~Il~~~is~e~~~~l~~l~~~~~~~i~~~~id-~~~~~~~~~~~ 101 (334)
T PRK15171 24 NSLDIAYG-IDKNFLFGCGVSIASVLLNNPDKSLVFHVFTDYISDADKQRFSALAKQYNTRINIYLIN-CERLKSLPSTK 101 (334)
T ss_pred CceeEEEE-CcHhhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEeC-HHHHhCCcccC
Confidence 67999876 6889999999999999998764 699999999999999999999999999999998886 44454433344
Q ss_pred cH-HHHHHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHhcCCCCCeEEEee-ccCCCCCCCCcccccchhhhhhc--C
Q 001078 932 RI-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTP-FCDNNKDMDGYRFWRQGFWKDHL--R 1007 (1162)
Q Consensus 932 r~-~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~Dl~g~~~Aav~-d~~~~~~~~g~~~w~~gyw~~~L--~ 1007 (1162)
++ ..+|+|||+|++||++++||||||||+||++||++||++|+++..+|||. ++.. .+|... +..+ +
T Consensus 102 ~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~~dl~~~~~aav~~d~~~-------~~~~~~--~~~l~~~ 172 (334)
T PRK15171 102 NWTYATYFRFIIADYFIDKTDKVLYLDADIACKGSIKELIDLDFAENEIAAVVAEGDA-------EWWSKR--AQSLQTP 172 (334)
T ss_pred cCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHhccCCCCeEEEEEeccch-------hHHHHH--HHhcCCc
Confidence 44 48999999999999889999999999999999999999999966677664 4321 112111 1122 1
Q ss_pred --CCCeeeeeeeeEehHHHHHhcHHHHHHHHHHHhccCCCCCCCCCCChhhhccccCceeecCCccccccCCC-------
Q 001078 1008 --GRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQEWLWCESWC------- 1078 (1162)
Q Consensus 1008 --~~~YfNSGV~liNL~~~R~~~~~dkl~~~~~~ls~~~~sl~~~DQDllN~~~~~~~I~~Lp~~wN~~~~~~------- 1078 (1162)
+..|||||||||||++||++++++++++++..- .....+.++|||+||.+|.+ .+..||++||++.+..
T Consensus 173 ~~~~~YFNsGVlliNl~~wRe~~i~~k~~~~l~~~-~~~~~~~~~DQDiLN~~~~~-~~~~L~~~wN~~~~~~~~~~~~~ 250 (334)
T PRK15171 173 GLASGYFNSGFLLINIPAWAQENISAKAIEMLADP-EIVSRITHLDQDVLNILLAG-KVKFIDAKYNTQFSLNYELKDSV 250 (334)
T ss_pred cccccceecceEEEcHHHHHHhhHHHHHHHHHhcc-ccccceeecChhHHHHHHcC-CeEECCHhhCCccchhHHHHhcc
Confidence 246999999999999999999999999988621 11246788999999999996 8999999999986532
Q ss_pred CccccCCCeEEeccCCCCCCChh
Q 001078 1079 GNATKSKAKTIDLCNNPMTKEPK 1101 (1162)
Q Consensus 1079 ~~e~~~~akiI~~~~np~tk~~k 1101 (1162)
.......+++||||+. +|+|+
T Consensus 251 ~~~~~~~p~IIHy~G~--~KPW~ 271 (334)
T PRK15171 251 INPVNDETVFIHYIGP--TKPWH 271 (334)
T ss_pred cccccCCCEEEEECCC--CCCCC
Confidence 1222356899999973 56664
No 6
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=100.00 E-value=3e-34 Score=316.45 Aligned_cols=232 Identities=21% Similarity=0.306 Sum_probs=191.7
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHcCC-CCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCcccccccccccH
Q 001078 855 INIFSIASGHLYERFLKIMILSVLKNTC-RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRI 933 (1162)
Q Consensus 855 InIf~vasg~~Y~~~l~v~I~SIl~nt~-~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r~ 933 (1162)
|||+++ +|.+|..++++++.|+++|++ .+++|||++++++++.++.|+.+...++..++++.++++.+...+....++
T Consensus 1 ~~I~~~-~d~~y~~~~~~~l~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~ 79 (248)
T cd04194 1 MNIVFA-IDDNYAPYLAVTIKSILANNSKRDYDFYILNDDISEENKKKLKELLKKYNSSIEFIKIDNDDFKFFPATTDHI 79 (248)
T ss_pred CCEEEE-ecHhhHHHHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEcCHHHHhcCCcccccc
Confidence 689876 578999999999999999998 589999999999999999999999888999999999866544333122333
Q ss_pred -HHHHHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHhcCCCCCeEEEeeccCCCCCCCCcccccchhhhhhcCCCCee
Q 001078 934 -IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYH 1012 (1162)
Q Consensus 934 -~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~Dl~g~~~Aav~d~~~~~~~~g~~~w~~gyw~~~L~~~~Yf 1012 (1162)
..+|.|||+|.+|| +++||||||+|++|.+||.+||++|++|+++||++||..... . .++ .........+||
T Consensus 80 ~~~~y~rl~l~~ll~-~~~rvlylD~D~lv~~di~~L~~~~~~~~~~aa~~d~~~~~~--~--~~~--~~~~~~~~~~yf 152 (248)
T cd04194 80 SYATYYRLLIPDLLP-DYDKVLYLDADIIVLGDLSELFDIDLGDNLLAAVRDPFIEQE--K--KRK--RRLGGYDDGSYF 152 (248)
T ss_pred cHHHHHHHHHHHHhc-ccCEEEEEeCCEEecCCHHHHhcCCcCCCEEEEEecccHHHH--H--HHH--hhcCCCccccee
Confidence 58999999999999 899999999999999999999999999999999999864210 0 000 001112356899
Q ss_pred eeeeeeEehHHHHHhcHHHHHHHHHHHhccCCCCCCCCCCChhhhccccCceeecCCccccccCCCCcc-----------
Q 001078 1013 ISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQEWLWCESWCGNA----------- 1081 (1162)
Q Consensus 1013 NSGV~liNL~~~R~~~~~dkl~~~~~~ls~~~~sl~~~DQDllN~~~~~~~I~~Lp~~wN~~~~~~~~e----------- 1081 (1162)
||||||+|+++||+.++.+++++++++ +...+.+.|||+||.+|.+ .+..||.+||++.+++...
T Consensus 153 NsGv~l~nl~~~r~~~~~~~~~~~~~~---~~~~~~~~DQd~LN~~~~~-~~~~L~~~~N~~~~~~~~~~~~~~~~~~~~ 228 (248)
T cd04194 153 NSGVLLINLKKWREENITEKLLELIKE---YGGRLIYPDQDILNAVLKD-KILYLPPRYNFQTGFYYLLKKKSKEEQELE 228 (248)
T ss_pred eecchheeHHHHHHhhhHHHHHHHHHh---CCCceeeCChHHHHHHHhC-CeEEcCcccccchhHhHHhhccchhHHHHH
Confidence 999999999999999999999999884 4556888999999999996 7999999999998876432
Q ss_pred -ccCCCeEEeccCCCCCCCh
Q 001078 1082 -TKSKAKTIDLCNNPMTKEP 1100 (1162)
Q Consensus 1082 -~~~~akiI~~~~np~tk~~ 1100 (1162)
....+++|||++.+ |+|
T Consensus 229 ~~~~~~~iiHf~g~~--KPW 246 (248)
T cd04194 229 EARKNPVIIHYTGSD--KPW 246 (248)
T ss_pred HHhcCCEEEEeCCCC--CCC
Confidence 35689999999863 555
No 7
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=100.00 E-value=5e-34 Score=319.33 Aligned_cols=250 Identities=20% Similarity=0.223 Sum_probs=183.4
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecC-CcccccccccccH
Q 001078 855 INIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKW-PTWLHKQKEKQRI 933 (1162)
Q Consensus 855 InIf~vasg~~Y~~~l~v~I~SIl~nt~~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~w-p~~L~~~~~~~r~ 933 (1162)
||+..|+++.+|.+.++++|+||+.|+..+++|||+++++|.+.++.|.+..+.++.++.|++++. -..+... ...++
T Consensus 1 ~~~~iv~~~~~y~~~~~~~i~Sil~n~~~~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~~~~~~~~~~-~~~~~ 79 (280)
T cd06431 1 IHVAIVCAGYNASRDVVTLVKSVLFYRRNPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELKSRVSWI-PNKHY 79 (280)
T ss_pred CEEEEEEccCCcHHHHHHHHHHHHHcCCCCEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhHHhhhhhccC-cccch
Confidence 466667777899999999999999999878999999999999999999988888899999998841 1111111 11243
Q ss_pred H--HHHHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHhc--CCCC-CeEEEeeccCCCCCCCCcccccch-hhhhhc-
Q 001078 934 I--WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDM--DIKG-RPLAYTPFCDNNKDMDGYRFWRQG-FWKDHL- 1006 (1162)
Q Consensus 934 ~--~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~--Dl~g-~~~Aav~d~~~~~~~~g~~~w~~g-yw~~~L- 1006 (1162)
+ .+|.|||+|.+||++++||||||||+||++||+|||++ |+.+ +++|++++... |..+ .|+...
T Consensus 80 s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~~~~~~~~~~~a~v~~~~~---------~~~~~~~~~~~~ 150 (280)
T cd06431 80 SGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLGLVENQSD---------WYLGNLWKNHRP 150 (280)
T ss_pred hhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHHHhhhcCCCcEEEEeccchh---------hhhhhhhhccCC
Confidence 3 47799999999998899999999999999999999998 6765 46666665311 1111 111111
Q ss_pred --CCCCeeeeeeeeEehHHHHHhcHHHHHHHHHHHhccCCCCCCCCCCChhhhccccCc--eeecCCccccccCCCC--c
Q 001078 1007 --RGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVP--IFSLPQEWLWCESWCG--N 1080 (1162)
Q Consensus 1007 --~~~~YfNSGV~liNL~~~R~~~~~dkl~~~~~~ls~~~~sl~~~DQDllN~~~~~~~--I~~Lp~~wN~~~~~~~--~ 1080 (1162)
....|||||||||||++||++++.+++.....+.......+.++|||+||.++.+.+ ++.||++||+|.++.. .
T Consensus 151 ~~~~~~yFNsGVmlinL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~DQDiLN~v~~~~~~~~~~L~~~wN~~~~~~~~~~ 230 (280)
T cd06431 151 WPALGRGFNTGVILLDLDKLRKMKWESMWRLTAERELMSMLSTSLADQDIFNAVIKQNPFLVYQLPCAWNVQLSDHTRSE 230 (280)
T ss_pred CcccccceeeeeeeeeHHHHHhhCHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHcCCcceeEECCCccccccCccchHh
Confidence 113599999999999999999999998866543212234577899999999999743 8899999999864321 1
Q ss_pred ---cccCCCeEEeccCCCCCCChhhH-hhhcccccCchhh
Q 001078 1081 ---ATKSKAKTIDLCNNPMTKEPKLQ-GARRIVSEWPDLD 1116 (1162)
Q Consensus 1081 ---e~~~~akiI~~~~np~tk~~kl~-~a~r~~~~w~~~d 1116 (1162)
.....+++|||++. +|+|... .+..++..|..|.
T Consensus 231 ~~~~~~~~p~IIHf~g~--~KPW~~~~~~~~~~~~~~~~~ 268 (280)
T cd06431 231 QCYRDVSDLKVIHWNSP--KKLRVKNKHVEFFRNLYLTFL 268 (280)
T ss_pred HhhcCcCCCEEEEeCCC--CCCCCcCCCChHHHHHHHHHH
Confidence 11357899999973 4555322 2344555565554
No 8
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=100.00 E-value=9.3e-33 Score=308.20 Aligned_cols=263 Identities=18% Similarity=0.293 Sum_probs=193.3
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHcCCCCeEEEEEeCC-CChhHHHHHHHHHHhcCcEE--EEEEecCCcccccccccc
Q 001078 855 INIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNY-LSPQFKDVIPHMAQEYGFEY--ELITYKWPTWLHKQKEKQ 931 (1162)
Q Consensus 855 InIf~vasg~~Y~~~l~v~I~SIl~nt~~~v~f~Il~~~-lS~~~k~~L~~l~~~~~~~i--~fv~~~wp~~L~~~~~~~ 931 (1162)
|||..|+||+. .+.+.+||+|++.|+..+++|||++++ +++++++.+.++...++..+ .++.+.+|..-.... +.
T Consensus 1 ~~~~vv~~g~~-~~~~~~~lkSil~~n~~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~P~~~~~~w-s~ 78 (304)
T cd06430 1 MHLAVVACGER-LEETLTMLKSAIVFSQKPLRFHIFAEDQLKQSFKEKLDDWPELIDRKFNYTLHPITFPSGNAAEW-KK 78 (304)
T ss_pred CEEEEEEcCCc-HHHHHHHHHHHHHhCCCCEEEEEEECCccCHHHHHHHHHHHHhccceeeeEEEEEecCccchhhh-hh
Confidence 58888888977 688999999999999779999999987 89999999999977664433 666666664210001 11
Q ss_pred cH-HHHHHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHhc--CCCCC-eEEEeeccCCCCCCCCcccccchhhhhhcC
Q 001078 932 RI-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDM--DIKGR-PLAYTPFCDNNKDMDGYRFWRQGFWKDHLR 1007 (1162)
Q Consensus 932 r~-~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~--Dl~g~-~~Aav~d~~~~~~~~g~~~w~~gyw~~~L~ 1007 (1162)
.. ..+|+|||+|.+|| ++|||||||+|+||.+||+|||++ |+++. .+|++++..... .| |...+.+....
T Consensus 79 l~~~~~y~RL~ip~lLp-~~dkvLYLD~Dii~~~dI~eL~~~~~df~~~~~aA~v~e~~~~~--~~---~~~~~~~~~~~ 152 (304)
T cd06430 79 LFKPCAAQRLFLPSLLP-DVDSLLYVDTDILFLRPVEEIWSFLKKFNSTQLAAMAPEHEEPN--IG---WYNRFARHPYY 152 (304)
T ss_pred cccHHHHHHHHHHHHhh-hhceEEEeccceeecCCHHHHHHHHhhcCCCeEEEEEecccccc--hh---hhhhhcccCcc
Confidence 11 38999999999999 899999999999999999999999 99885 556666542210 11 22111111112
Q ss_pred CCCeeeeeeeeEehHHHHH-----------hcHHHHHHHHHHHhccCCCCCCCCCCChhhhccccCc--eeecCCccccc
Q 001078 1008 GRPYHISALYVVDLKRFRE-----------TAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVP--IFSLPQEWLWC 1074 (1162)
Q Consensus 1008 ~~~YfNSGV~liNL~~~R~-----------~~~~dkl~~~~~~ls~~~~sl~~~DQDllN~~~~~~~--I~~Lp~~wN~~ 1074 (1162)
+..|||||||||||++||+ .++.+++++++++ +...+.++|||+||.++++.| ++.||++||++
T Consensus 153 ~~~gFNSGVmLmNL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~DQDiLN~v~~~~p~~~~~Lp~~wN~~ 229 (304)
T cd06430 153 GKTGVNSGVMLMNLTRMRRKYFKNDMTPVGLRWEEILMPLYKK---YKLKITWGDQDLINIIFHHNPEMLYVFPCHWNYR 229 (304)
T ss_pred cccccccceeeeeHHHHHhhhcccccchhhhhHHHHHHHHHHh---cccCCCCCCHHHHHHHHcCCCCeEEEcCccccCC
Confidence 4467999999999999999 7889999999874 456788999999999999743 88999999987
Q ss_pred cCCC------CccccCCCeEEeccCCCC--CCChhhHhhhcccccCchhhHHHHHHHHHhcC
Q 001078 1075 ESWC------GNATKSKAKTIDLCNNPM--TKEPKLQGARRIVSEWPDLDSEARQFTAKILG 1128 (1162)
Q Consensus 1075 ~~~~------~~e~~~~akiI~~~~np~--tk~~kl~~a~r~~~~w~~~d~~~~~~~~~~~~ 1128 (1162)
.+.| ......++++||+..... .|.|.+...+..+.++..-++.-++++.++..
T Consensus 230 ~d~~~y~~~~~~~~~~~~~~~H~n~~~~~~~~~~~f~~~~~~~~~~~~g~~~~~~~~~~l~~ 291 (304)
T cd06430 230 PDHCMYGSNCKAAEEEGVFILHGNRGVYHSDKQPAFRAVYEAIREYTFGDDLHQSLLRPLEL 291 (304)
T ss_pred ccceeecccccccccccceEEEcCCCCCCCccchHHHHHHHHHHhcccccchHHHhHHHHHH
Confidence 6554 222336789999864322 35666666666556655455666677777643
No 9
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=100.00 E-value=9.5e-33 Score=305.11 Aligned_cols=227 Identities=16% Similarity=0.176 Sum_probs=178.5
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHcCC--CCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCcccccc-----
Q 001078 855 INIFSIASGHLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQ----- 927 (1162)
Q Consensus 855 InIf~vasg~~Y~~~l~v~I~SIl~nt~--~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~----- 927 (1162)
+||++. +| +|. .+++++.|++.|++ .+++|||++++++.+.++.+......++.+|+++.++ +..+...
T Consensus 1 ~hiv~~-~D-n~l-~~~v~i~S~l~nn~~~~~~~fhvvtd~~s~~~~~~~~~~~~~~~~~i~~~~i~-~~~~~~~~~~~~ 76 (257)
T cd06429 1 IHVVIF-SD-NRL-AAAVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKVLNFD-DFKLLGKVKVDS 76 (257)
T ss_pred CCEEEE-ec-chh-HHHHHHHHHHHhCCCCCceEEEEecCccCHHHHHHHHHhcCCCCceEEEEEeC-cHHhhcccccch
Confidence 578765 67 887 47788888888775 4799999999999888888877777778999999985 2222111
Q ss_pred ---------------cccccH-HHHHHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHhcCCCCCeEEEeeccCCCCCC
Q 001078 928 ---------------KEKQRI-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDM 991 (1162)
Q Consensus 928 ---------------~~~~r~-~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~Dl~g~~~Aav~d~~~~~~~ 991 (1162)
+...++ ..+|+||++|.+|| +++||||||||+||++||+|||++||+|+++|||+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp-~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aav~d------- 148 (257)
T cd06429 77 LMQLESEADTSNLKQRKPEYISLLNFARFYLPELFP-KLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGAVET------- 148 (257)
T ss_pred hhhhhccccccccccCCccccCHHHHHHHHHHHHhh-hhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEEEhh-------
Confidence 122344 48999999999999 699999999999999999999999999999999965
Q ss_pred CCcccccchhhhhhcCCCCeeeeeeeeEehHHHHHhcHHHHHHHHHHHhccCC-CCCCCCCCChhhhccccCceeecCCc
Q 001078 992 DGYRFWRQGFWKDHLRGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDP-NSLANLDQDLPNYAQHTVPIFSLPQE 1070 (1162)
Q Consensus 992 ~g~~~w~~gyw~~~L~~~~YfNSGV~liNL~~~R~~~~~dkl~~~~~~ls~~~-~sl~~~DQDllN~~~~~~~I~~Lp~~ 1070 (1162)
|||||||||||++||++++++++..+++...... ......|||++|.+|.+ .+..||++
T Consensus 149 -------------------yfNsGV~linl~~wr~~~i~~~~~~~~~~~~~~~~~~~~~~dqd~ln~~~~~-~~~~L~~~ 208 (257)
T cd06429 149 -------------------SWNPGVNVVNLTEWRRQNVTETYEKWMELNQEEEVTLWKLITLPPGLIVFYG-LTSPLDPS 208 (257)
T ss_pred -------------------hcccceEEEeHHHHHhccHHHHHHHHHHHhhhcccchhhcCCccHHHHHccC-eeEECChH
Confidence 7999999999999999999999999887532111 22455799999999996 89999999
Q ss_pred cccccC-CCC---ccccCCCeEEeccCCCCCCChhhHhhhcccccCchh
Q 001078 1071 WLWCES-WCG---NATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWPDL 1115 (1162)
Q Consensus 1071 wN~~~~-~~~---~e~~~~akiI~~~~np~tk~~kl~~a~r~~~~w~~~ 1115 (1162)
||++.- +.. .+....+++|||++. +|+|.-..-.+..+.|+.|
T Consensus 209 wN~~~l~~~~~~~~~~~~~~~IIHy~G~--~KPW~~~~~~~~~~~w~~y 255 (257)
T cd06429 209 WHVRGLGYNYGIRPQDIKAAAVLHFNGN--MKPWLRTAIPSYKELWEKY 255 (257)
T ss_pred HcccCCcccccccccccCCcEEEEECCC--CCCcCCCCCChHHHHHHHH
Confidence 998732 211 233468999999983 4777655445666778766
No 10
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.98 E-value=3.9e-32 Score=306.53 Aligned_cols=239 Identities=18% Similarity=0.173 Sum_probs=195.8
Q ss_pred eeEEEEEecCcchHHHHHHHHHHHHHcCCC-CeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCccccccc-ccc
Q 001078 854 TINIFSIASGHLYERFLKIMILSVLKNTCR-PVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQK-EKQ 931 (1162)
Q Consensus 854 ~InIf~vasg~~Y~~~l~v~I~SIl~nt~~-~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~-~~~ 931 (1162)
++||+.. .|++|..+++++|+|++.|++. .++||+|.++++++++++|.++++.|+..+.++-++- +.+...+ .+.
T Consensus 2 ~~~Iv~a-~D~nY~~~~gvsI~SiL~~n~~~~~~fhil~~~i~~e~~~~l~~~~~~f~~~i~~~~id~-~~~~~~~~~~~ 79 (325)
T COG1442 2 TIPIAFA-FDKNYLIPAGVSIYSLLEHNRKIFYKFHILVDGLNEEDKKKLNETAEPFKSFIVLEVIDI-EPFLDYPPFTK 79 (325)
T ss_pred cccEEEE-cccccchhHHHHHHHHHHhCccccEEEEEEecCCCHHHHHHHHHHHHhhccceeeEEEec-hhhhccccccc
Confidence 4889764 6889999999999999999986 8999999999999999999999999998887776653 3333333 456
Q ss_pred cHH-HHHHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHhcCCCCCeEEEeeccCCCCCCCCcccccchhhhhh--cCC
Q 001078 932 RII-WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDH--LRG 1008 (1162)
Q Consensus 932 r~~-~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~Dl~g~~~Aav~d~~~~~~~~g~~~w~~gyw~~~--L~~ 1008 (1162)
|++ ++|+|+|++++||+ .||+||+|+|+||.||+++||++|++++++|||.|+.+.. |.++--+.. ...
T Consensus 80 ~~s~~v~~R~fiadlf~~-~dK~lylD~Dvi~~g~l~~lf~~~~~~~~~aaV~D~~~~~-------~~~~~~~~~~~~~~ 151 (325)
T COG1442 80 RFSKMVLVRYFLADLFPQ-YDKMLYLDVDVIFCGDLSELFFIDLEEYYLAAVRDVFSHY-------MKEGALRLEKGDLE 151 (325)
T ss_pred chHHHHHHHHHHHHhccc-cCeEEEEecCEEEcCcHHHHHhcCCCcceEEEEeehhhhh-------hhhhhhHhhhcccc
Confidence 665 99999999999996 4999999999999999999999999999999999986532 111111111 125
Q ss_pred CCeeeeeeeeEehHHHHHhcHHHHHHHHHHHhccCCCCCCCCCCChhhhccccCceeecCCccccccCCCC-------cc
Q 001078 1009 RPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQEWLWCESWCG-------NA 1081 (1162)
Q Consensus 1009 ~~YfNSGV~liNL~~~R~~~~~dkl~~~~~~ls~~~~sl~~~DQDllN~~~~~~~I~~Lp~~wN~~~~~~~-------~e 1081 (1162)
..||||||+++|++.||++++.+++.+.+. ...+.+.++|||+||.+|++ ++..||.+||.+.+.-. ..
T Consensus 152 ~~yFNaG~llinl~~W~~~~i~~k~i~~~~---~~~~~~~~~DQdiLN~i~~~-~~~~L~~~YN~~~~~~~~~~~~~~~~ 227 (325)
T COG1442 152 GSYFNAGVLLINLKLWREENIFEKLIELLK---DKENDLLYPDQDILNMIFED-RVLELPIRYNAIPYIDSQLKDKYIYP 227 (325)
T ss_pred cccCccceeeehHHHHHHhhhHHHHHHHHh---ccccccCCccccHHHHHHHh-hhhccCcccceeehhhhccchhhhcc
Confidence 689999999999999999999999999986 23478999999999999997 89999999999965322 33
Q ss_pred ccCCCeEEeccCCCCCCChhhHhhhcc
Q 001078 1082 TKSKAKTIDLCNNPMTKEPKLQGARRI 1108 (1162)
Q Consensus 1082 ~~~~akiI~~~~np~tk~~kl~~a~r~ 1108 (1162)
....+.++|||+- +|+|+...+.+.
T Consensus 228 ~~~~~~iiHy~g~--~KPW~~~~~~~~ 252 (325)
T COG1442 228 FGDDPVILHYAGP--TKPWHSDSSNYP 252 (325)
T ss_pred CCCCceEEEecCC--CCCCcCcccccc
Confidence 4466789999984 477777765553
No 11
>PLN02718 Probable galacturonosyltransferase
Probab=99.97 E-value=2.3e-31 Score=313.41 Aligned_cols=260 Identities=15% Similarity=0.188 Sum_probs=194.8
Q ss_pred cCCeeEEEEEecCcchHHHHHHHHHHHHHcCC--CCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCcccc---
Q 001078 851 HGKTINIFSIASGHLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLH--- 925 (1162)
Q Consensus 851 ~~~~InIf~vasg~~Y~~~l~v~I~SIl~nt~--~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~--- 925 (1162)
+...+||+.+ +| +| ..++|+|.|++.|++ ..++|||+++.++.+.+..+..+...++..|+++.++--.|+.
T Consensus 310 d~~~~Hia~~-sD-Nv-laasVvInSil~Ns~np~~ivFHVvTD~is~~~mk~wf~l~~~~~a~I~V~~Iddf~~lp~~~ 386 (603)
T PLN02718 310 DPDLYHYVVF-SD-NV-LACSVVVNSTISSSKEPEKIVFHVVTDSLNYPAISMWFLLNPPGKATIQILNIDDMNVLPADY 386 (603)
T ss_pred CCcceeEEEE-cC-Cc-eeEEEEhhhhhhccCCCCcEEEEEEeCCCCHHHHHHHHHhCCCCCcEEEEEecchhccccccc
Confidence 4466999765 45 46 489999999999954 4699999999999999998888888778999999985112221
Q ss_pred -----cccc--cccH-HHHHHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHhcCCCCCeEEEeeccCCCC----CCCC
Q 001078 926 -----KQKE--KQRI-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNK----DMDG 993 (1162)
Q Consensus 926 -----~~~~--~~r~-~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~Dl~g~~~Aav~d~~~~~----~~~g 993 (1162)
.... ..++ ..+|+||+||.+|| +++||||||+|+||++||.+||++||+|+++|||++|.... .+..
T Consensus 387 ~~~lk~l~s~~~~~~S~~~y~Rl~ipellp-~l~KvLYLD~DvVV~~DL~eL~~iDl~~~v~aaVedC~~~~~~~~~~~~ 465 (603)
T PLN02718 387 NSLLMKQNSHDPRYISALNHARFYLPDIFP-GLNKIVLFDHDVVVQRDLSRLWSLDMKGKVVGAVETCLEGEPSFRSMDT 465 (603)
T ss_pred hhhhhhccccccccccHHHHHHHHHHHHhc-ccCEEEEEECCEEecCCHHHHhcCCCCCcEEEEeccccccccchhhhhh
Confidence 1111 1233 48999999999999 59999999999999999999999999999999999996421 1000
Q ss_pred cccccchhh-hhhc-CCCCeeeeeeeeEehHHHHHhcHHHHHHHHHHHhccCCCCCCCCCCChhh---hccccCceeecC
Q 001078 994 YRFWRQGFW-KDHL-RGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPN---YAQHTVPIFSLP 1068 (1162)
Q Consensus 994 ~~~w~~gyw-~~~L-~~~~YfNSGV~liNL~~~R~~~~~dkl~~~~~~ls~~~~sl~~~DQDllN---~~~~~~~I~~Lp 1068 (1162)
+..+. +.| .+.+ ++.||||+||+||||++||++++++++..+++. +... ...|||.|| .+|.+ .++.||
T Consensus 466 ~lnfs-~p~i~~~fn~~~CyfNsGVlLIDLk~WReenITe~~~~~l~~---n~~~-~l~dqdaLpp~LlvF~g-ri~~LD 539 (603)
T PLN02718 466 FINFS-DPWVAKKFDPKACTWAFGMNLFDLEEWRRQKLTSVYHKYLQL---GVKR-PLWKAGSLPIGWLTFYN-QTVALD 539 (603)
T ss_pred hhhcc-chhhhcccCCCccccccceEEEeHHHHHhcChHHHHHHHHHh---ccCc-cccCcccccHHHHHhcC-ceeecC
Confidence 00010 001 1122 367999999999999999999999999999874 2222 446999998 77875 899999
Q ss_pred CccccccCCC----CccccCCCeEEeccCCCCCCChhhHhh-hcccccCchhhHHHHHHH
Q 001078 1069 QEWLWCESWC----GNATKSKAKTIDLCNNPMTKEPKLQGA-RRIVSEWPDLDSEARQFT 1123 (1162)
Q Consensus 1069 ~~wN~~~~~~----~~e~~~~akiI~~~~np~tk~~kl~~a-~r~~~~w~~~d~~~~~~~ 1123 (1162)
.+||.+...+ ..+....|.||||+++. +||++.+ .++.+-|..|-+--..++
T Consensus 540 ~rWNv~gLG~~~~i~~~~i~~aaIIHYnG~~---KPWle~~i~~yr~~W~k~v~~~~~~l 596 (603)
T PLN02718 540 KRWHVLGLGHESGVGASDIEQAAVIHYDGVM---KPWLDIGIGKYKRYWNIHVPYHHPYL 596 (603)
T ss_pred hHHhccCccccccccccccCCCEEEEECCCC---CccccCChhhHHHHHHhhcCCCChHH
Confidence 9999987432 23456889999999853 4555655 478888998754444443
No 12
>PLN02523 galacturonosyltransferase
Probab=99.97 E-value=6.2e-30 Score=297.94 Aligned_cols=253 Identities=16% Similarity=0.222 Sum_probs=182.3
Q ss_pred CeeEEEEEecCcchHHHHHHHHHHHHHcCCC--CeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCcccc----c
Q 001078 853 KTINIFSIASGHLYERFLKIMILSVLKNTCR--PVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLH----K 926 (1162)
Q Consensus 853 ~~InIf~vasg~~Y~~~l~v~I~SIl~nt~~--~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~----~ 926 (1162)
.-.|.+ +.++. ...+.|+|.|++.|+++ ++.|||+++.++...+..+-.+....+..|++..++--.|+. +
T Consensus 247 ~l~Hy~-ifSdN--vlAAsVvInStv~Ns~~p~~~VFHIVTD~ln~~amk~Wf~~n~~~~a~I~V~~Iedf~~ln~~~~p 323 (559)
T PLN02523 247 SLYHYA-IFSDN--VIAASVVVNSAVKNAKEPWKHVFHVVTDRMNLAAMKVMFKMRDLNGAHVEVKAVEDYKFLNSSYVP 323 (559)
T ss_pred CcceEE-EecCc--chhhhhhHHHHHHccCCCcceEEEEEeCCCCHHHHHHHHhhCCCCCcEEEEEEeehhhhcccccch
Confidence 446664 44664 67899999999999875 599999999999877777766665557888877774102322 0
Q ss_pred ---ccc---------------------------cccH-HHHHHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHhcCCC
Q 001078 927 ---QKE---------------------------KQRI-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIK 975 (1162)
Q Consensus 927 ---~~~---------------------------~~r~-~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~Dl~ 975 (1162)
|.+ ...+ ..+|+||+||++|| +++||||||+|+||++||++||++||+
T Consensus 324 vlk~l~s~~~~~~~f~~~~~~~~~~~~~~k~~~p~ylS~~ny~Rf~IPeLLP-~ldKVLYLD~DVVVq~DLseLw~iDL~ 402 (559)
T PLN02523 324 VLRQLESANLQKFYFENKLENATKDSSNMKFRNPKYLSMLNHLRFYLPEMYP-KLHRILFLDDDVVVQKDLTGLWKIDMD 402 (559)
T ss_pred HHHhhhhhhhhhhhccccccccccccccccccCcchhhHHHHHHHHHHHHhc-ccCeEEEEeCCEEecCCHHHHHhCcCC
Confidence 000 0223 38899999999999 699999999999999999999999999
Q ss_pred CCeEEEeeccCCC-CCCCCcccccchhhhhhc-CCCCeeeeeeeeEehHHHHHhcHHHHHHHHHHHhccCCCCCCCCCCC
Q 001078 976 GRPLAYTPFCDNN-KDMDGYRFWRQGFWKDHL-RGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQD 1053 (1162)
Q Consensus 976 g~~~Aav~d~~~~-~~~~g~~~w~~gyw~~~L-~~~~YfNSGV~liNL~~~R~~~~~dkl~~~~~~ls~~~~sl~~~DQD 1053 (1162)
|+++|||+||... .+......+....-++.+ .+.||||+||+||||++||++++++++. +++.+.. .....|||
T Consensus 403 gkv~aAVeDc~~~~~r~~~~ln~s~p~i~~yFNs~aC~wnsGVmlINL~~WRe~nITek~~-~w~~ln~---~~~l~Dqd 478 (559)
T PLN02523 403 GKVNGAVETCFGSFHRYAQYLNFSHPLIKEKFNPKACAWAYGMNIFDLDAWRREKCTEQYH-YWQNLNE---NRTLWKLG 478 (559)
T ss_pred CceEEEehhhhhHHHHHHHhhcccchhhhhCcCCCcccccCCcEEEeHHHHHHhchHHHHH-HHHHhcc---cccccccc
Confidence 9999999999521 000000000000111223 3568888999999999999999999984 5665422 24557999
Q ss_pred hhh---hccccCceeecCCccccccCCC----CccccCCCeEEeccCCCCCCChhhHhh-hcccccCchhhH
Q 001078 1054 LPN---YAQHTVPIFSLPQEWLWCESWC----GNATKSKAKTIDLCNNPMTKEPKLQGA-RRIVSEWPDLDS 1117 (1162)
Q Consensus 1054 llN---~~~~~~~I~~Lp~~wN~~~~~~----~~e~~~~akiI~~~~np~tk~~kl~~a-~r~~~~w~~~d~ 1117 (1162)
.|| .+|.+ .++.||++||++.-.+ +.+..+.|.||||+++. |+| ++.+ .++.+.|+.|-+
T Consensus 479 aLpp~LivF~g-ri~~LD~rWNvlglGy~~~i~~~~i~~paIIHYnG~~--KPW-le~~i~~yr~~W~kYl~ 546 (559)
T PLN02523 479 TLPPGLITFYS-TTKPLDKSWHVLGLGYNPSISMDEIRNAAVIHFNGNM--KPW-LDIAMNQFKPLWTKYVD 546 (559)
T ss_pred ccchHHHHhcC-ceEecCchhhccCCccCCCccccccCCCEEEEECCCC--Ccc-ccCCCCcchHHHHHHHc
Confidence 996 67775 8999999999875322 34456889999999863 545 4554 456777887743
No 13
>PLN02829 Probable galacturonosyltransferase
Probab=99.95 E-value=5.4e-28 Score=283.98 Aligned_cols=259 Identities=15% Similarity=0.238 Sum_probs=179.4
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHcCCC--CeEEEEEeCCCChh-HHHHHHHHHHhcCcEEEEEEe---cCCc-----c
Q 001078 855 INIFSIASGHLYERFLKIMILSVLKNTCR--PVKFWFIKNYLSPQ-FKDVIPHMAQEYGFEYELITY---KWPT-----W 923 (1162)
Q Consensus 855 InIf~vasg~~Y~~~l~v~I~SIl~nt~~--~v~f~Il~~~lS~~-~k~~L~~l~~~~~~~i~fv~~---~wp~-----~ 923 (1162)
.+=+++.||. .--+.|.+.|-+.|.++ ++.|||+++.+.=. .+.++. +..--+..|+...+ +|-. .
T Consensus 331 l~Hy~ifSdN--VLAasVVVnStv~na~~p~k~VFHivTD~~ny~aM~~WF~-~n~~~~A~v~V~nie~f~wln~~~~pv 407 (639)
T PLN02829 331 LYHYALFSDN--VLAAAVVVNSTVTNAKHPSKHVFHIVTDRLNYAAMRMWFL-VNPPGKATIQVQNIEEFTWLNSSYSPV 407 (639)
T ss_pred cceEEEEecc--eeEEEeeeehhhhcccCccceEEEEecCccchHHHHHHHh-hCCCccceEEEEehhhcccccccccHH
Confidence 4444555664 23467888899988864 68999999877632 222222 22222456665555 2311 0
Q ss_pred cccc-----------------------cccccH-HHHHHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHhcCCCCCeE
Q 001078 924 LHKQ-----------------------KEKQRI-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPL 979 (1162)
Q Consensus 924 L~~~-----------------------~~~~r~-~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~Dl~g~~~ 979 (1162)
++.. +...++ ..+|+|||||.+|| +++||||||+|+||++||++||++||+|+++
T Consensus 408 l~ql~~~~~~~~yf~~~~~~~~~~~k~r~p~ylS~lnY~RfyLPeLLP-~LdKVLYLD~DVVVqgDLseLw~iDL~gkvi 486 (639)
T PLN02829 408 LKQLGSQSMIDYYFRAHRANSDSNLKYRNPKYLSILNHLRFYLPEIFP-KLNKVLFLDDDIVVQKDLTGLWSIDLKGNVN 486 (639)
T ss_pred HHHhhhhhhhhhhhhccccCcccccccCCcchhhHHHHHHHHHHHHhc-ccCeEEEEeCCEEeCCChHHHHhCCCCCceE
Confidence 1100 001223 37899999999999 6999999999999999999999999999999
Q ss_pred EEeeccCCC-CCCCCcccccchhhhhhcC-CCCeeeeeeeeEehHHHHHhcHHHHHHHHHHHhccCCCCCCCCCCChhhh
Q 001078 980 AYTPFCDNN-KDMDGYRFWRQGFWKDHLR-GRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNY 1057 (1162)
Q Consensus 980 Aav~d~~~~-~~~~g~~~w~~gyw~~~L~-~~~YfNSGV~liNL~~~R~~~~~dkl~~~~~~ls~~~~sl~~~DQDllN~ 1057 (1162)
|||++|... .++..+.+|........+. ..||||+|||||||++||+.++++++..+++ + +..... .||+.||.
T Consensus 487 AAVedc~~~f~r~~~~l~fs~p~i~~~Fn~~~CyFNSGVmVINL~~WRe~nITe~y~~wm~-~--n~~r~L-~dlgaLPp 562 (639)
T PLN02829 487 GAVETCGESFHRFDRYLNFSNPLISKNFDPHACGWAYGMNVFDLDEWKRQNITEVYHSWQK-L--NHDRQL-WKLGTLPP 562 (639)
T ss_pred EEeccchhhhhhhhhhhhccchHhhhccCCcccceecceEEEeHHHHHHhChHHHHHHHHH-H--ccCCcc-ccccCCCh
Confidence 999999642 1112222222221222333 5799999999999999999999999998875 2 222232 69999998
Q ss_pred cc---ccCceeecCCccccccCCCC----ccccCCCeEEeccCCCCCCChhhHhh-hcccccCchhhHHHHHHHHH
Q 001078 1058 AQ---HTVPIFSLPQEWLWCESWCG----NATKSKAKTIDLCNNPMTKEPKLQGA-RRIVSEWPDLDSEARQFTAK 1125 (1162)
Q Consensus 1058 ~~---~~~~I~~Lp~~wN~~~~~~~----~e~~~~akiI~~~~np~tk~~kl~~a-~r~~~~w~~~d~~~~~~~~~ 1125 (1162)
++ . +.++.|+.+||.+.-.+. .+..+.|.+|||+++. +||++.+ .++.+.|..|.+--..++..
T Consensus 563 ~Ll~F~-g~i~~LD~rWNv~GLGy~~~v~~~~i~~aaIIHynG~~---KPWle~~i~~yr~lW~kYl~~~~~fl~~ 634 (639)
T PLN02829 563 GLITFW-KRTYPLDRSWHVLGLGYNPNVNQRDIERAAVIHYNGNM---KPWLEIGIPKYRNYWSKYVDYDQVYLRE 634 (639)
T ss_pred HHHHhc-CceEecChhheecCCCCCcccchhcccCCeEEEECCCC---CccccCCcccchHHHHHHHhcCchHHHh
Confidence 64 6 489999999999975443 2356889999999864 4556655 57889999997766666543
No 14
>PLN02742 Probable galacturonosyltransferase
Probab=99.95 E-value=2e-27 Score=277.09 Aligned_cols=260 Identities=16% Similarity=0.230 Sum_probs=185.3
Q ss_pred eeEEEEEecCcchHHHHHHHHHHHHHcCCCC--eEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCcccccc----
Q 001078 854 TINIFSIASGHLYERFLKIMILSVLKNTCRP--VKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQ---- 927 (1162)
Q Consensus 854 ~InIf~vasg~~Y~~~l~v~I~SIl~nt~~~--v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~---- 927 (1162)
..+=+++.||. .-.+.+.|.|.+.|++++ +.|||+++..+-.-+...-....--+..+++++++=-.|+...
T Consensus 226 ~l~Hy~ifSdN--vlAasvvvnStv~nsk~P~~~VFHiVTD~~n~~aM~~WF~~n~~~~a~v~V~n~e~f~wl~~~~~pv 303 (534)
T PLN02742 226 NLYHFCVFSDN--ILATSVVVNSTVSNAKHPDQLVFHLVTDEVNYGAMQAWFAMNDFKGVTVEVQKIEEFSWLNASYVPV 303 (534)
T ss_pred CcceEEEEecc--chhhhhhhhhhHhhhcCCCcEEEEEeechhhHHHHHHHHhhCCCCccEEEEEEeccccccccccchH
Confidence 34445566775 456789999999999865 9999999877644443333333333678888887511344320
Q ss_pred ---------------------------cccccH-HHHHHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHhcCCCCCeE
Q 001078 928 ---------------------------KEKQRI-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPL 979 (1162)
Q Consensus 928 ---------------------------~~~~r~-~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~Dl~g~~~ 979 (1162)
+...++ ..+|.||+||.+|| +++||||||+|+||++||++||++||+|+++
T Consensus 304 l~ql~~~~~~~~yf~~~~~~~~~~~k~r~p~y~s~~~y~R~~lP~llp-~l~KvlYLD~DvVV~~DL~eL~~~DL~~~vi 382 (534)
T PLN02742 304 LKQLQDSDTQSYYFSGSQDDGKTEIKFRNPKYLSMLNHLRFYIPEIYP-ALEKVVFLDDDVVVQKDLTPLFSIDLHGNVN 382 (534)
T ss_pred HHHhhhhhhhhhhcccccccccccccccCcccccHHHHHHHHHHHHhh-ccCeEEEEeCCEEecCChHHHhcCCCCCCEE
Confidence 001122 48999999999999 6999999999999999999999999999999
Q ss_pred EEeeccCCC-CCCCCcccccchhhhhhc-CCCCeeeeeeeeEehHHHHHhcHHHHHHHHHHHhccCCCCCCCCCCChhhh
Q 001078 980 AYTPFCDNN-KDMDGYRFWRQGFWKDHL-RGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNY 1057 (1162)
Q Consensus 980 Aav~d~~~~-~~~~g~~~w~~gyw~~~L-~~~~YfNSGV~liNL~~~R~~~~~dkl~~~~~~ls~~~~sl~~~DQDllN~ 1057 (1162)
|||+||... +++.++.+|.....+..+ ++.||||+||+||||++||++++++.+. ++++. + ......||+.+|.
T Consensus 383 aAVedC~~~f~ry~~yLnfS~p~i~~~f~~~aC~fNsGV~ViDL~~WRe~nITe~~~-~w~e~--n-~~~~l~d~gaLpp 458 (534)
T PLN02742 383 GAVETCLETFHRYHKYLNFSHPLISSHFDPDACGWAFGMNVFDLVAWRKANVTAIYH-YWQEQ--N-VDRTLWKLGTLPP 458 (534)
T ss_pred EEeCchhhhhhhhhhhhcccchhhhccCCCCccccccCcEEEeHHHHHhhcHHHHHH-HHHHh--c-cccccccccccch
Confidence 999999521 122222222222222222 3679999999999999999999999655 55543 2 2344569999996
Q ss_pred c---cccCceeecCCccccccCCC----CccccCCCeEEeccCCCCCCChhhHhh-hcccccCchhhHHHHHHHH
Q 001078 1058 A---QHTVPIFSLPQEWLWCESWC----GNATKSKAKTIDLCNNPMTKEPKLQGA-RRIVSEWPDLDSEARQFTA 1124 (1162)
Q Consensus 1058 ~---~~~~~I~~Lp~~wN~~~~~~----~~e~~~~akiI~~~~np~tk~~kl~~a-~r~~~~w~~~d~~~~~~~~ 1124 (1162)
+ |.+ .++.||.+||++.-.+ +.+..+.|+||||+++ .+||++.+ .++.+.|..|.+.-..++.
T Consensus 459 ~LLaF~g-~~~~LD~rWNv~gLG~~~~v~~~~i~~aaILHynG~---~KPWl~~~i~~yr~~W~kYl~~s~~fl~ 529 (534)
T PLN02742 459 GLLTFYG-LTEPLDRRWHVLGLGYDTNIDPRLIESAAVLHFNGN---MKPWLKLAIERYKPLWERYVNYSHPYLQ 529 (534)
T ss_pred HHHHHcC-cceecChhheecccccccccchhhccCCeEEEECCC---CCcccccCCcccchHHHHHHccCCHHHH
Confidence 4 664 8999999999986322 2346689999999985 35566655 5788999999766655554
No 15
>PLN02870 Probable galacturonosyltransferase
Probab=99.95 E-value=9e-28 Score=279.32 Aligned_cols=261 Identities=15% Similarity=0.244 Sum_probs=173.9
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHcCCC--CeEEEEEeCCCCh-hHHHHHHHHHHhcCcEEEEEEecCCccccc-----
Q 001078 855 INIFSIASGHLYERFLKIMILSVLKNTCR--PVKFWFIKNYLSP-QFKDVIPHMAQEYGFEYELITYKWPTWLHK----- 926 (1162)
Q Consensus 855 InIf~vasg~~Y~~~l~v~I~SIl~nt~~--~v~f~Il~~~lS~-~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~----- 926 (1162)
.+=+++.||. .--+.|.+.|-+.|.++ ++.|||+++.+.= ..+.++. +..--+..|+...++=-.||..
T Consensus 206 ~~Hy~ifSdN--vLAasVvvnStv~~a~~p~~~VFHvvTD~~n~~aM~~WF~-~n~~~~a~v~V~~~e~f~wl~~~~~pv 282 (533)
T PLN02870 206 YHHFVLSTDN--ILAASVVVSSTVQSSLKPEKIVFHVITDKKTYAGMHSWFA-LNSVSPAIVEVKGVHQFDWLTRENVPV 282 (533)
T ss_pred ceeEEEEecc--eeEEEeeeehhhhcccCccceEEEEecCccccHHHHHHHh-hCCCccceEEEEehhhccccccccchH
Confidence 4444556665 23457788888888764 6889999986652 2222221 1111144555444420011110
Q ss_pred ------------------c-------------------cccccH-HHHHHHHhhcccCCCCCCeEEEEeCCeeecCCchH
Q 001078 927 ------------------Q-------------------KEKQRI-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGE 968 (1162)
Q Consensus 927 ------------------~-------------------~~~~r~-~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~e 968 (1162)
+ +...++ ..+|+||+||++|| +++||||||+|+||++||++
T Consensus 283 l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ylS~lny~Rl~LPelLP-~LdKVLYLD~DVVVqgDLse 361 (533)
T PLN02870 283 LEAVESHNGIRNYYHGNHIAGANLSETTPRTFASKLQARSPKYISLLNHLRIYLPELFP-NLDKVVFLDDDVVIQRDLSP 361 (533)
T ss_pred HHHHhhhHHHHHHhhcccccccccccccchhhhcccccCCccccCHHHHHHHHHHHHhh-hcCeEEEEeCCEEecCcHHH
Confidence 0 001122 37999999999999 79999999999999999999
Q ss_pred HHhcCCCCCeEEEeeccCCCC------CCCCcccccchhhhhhc-CCCCeeeeeeeeEehHHHHHhcHHHHHHHHHHHhc
Q 001078 969 LYDMDIKGRPLAYTPFCDNNK------DMDGYRFWRQGFWKDHL-RGRPYHISALYVVDLKRFRETAAGDNLRVFYETLS 1041 (1162)
Q Consensus 969 L~~~Dl~g~~~Aav~d~~~~~------~~~g~~~w~~gyw~~~L-~~~~YfNSGV~liNL~~~R~~~~~dkl~~~~~~ls 1041 (1162)
||++||+|+++|||+||.... ...++-.+.....+..+ ++.|||||||+||||++||++++++++..++++-
T Consensus 362 Lw~iDL~gkviaAVeDc~~~~~~~~~~~~~~YfNfs~p~i~~~fd~~~cyfNSGVlLINL~~WRe~nITek~~~~l~~n- 440 (533)
T PLN02870 362 LWDIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNFSHPLIAKNLDPEECAWAYGMNIFDLRAWRKTNIRETYHSWLKEN- 440 (533)
T ss_pred HhhCCCCCceEEEEccccccchhhhhhhhhhhcccccchhhcccCcccceeeccchhccHHHHHHcChHHHHHHHHHhh-
Confidence 999999999999999995321 11010000111111222 3679999999999999999999999999998742
Q ss_pred cCCCCCCCCCCChh---hhccccCceeecCCccccccCCC----CccccCCCeEEeccCCCCCCChhhHhhhcccccCch
Q 001078 1042 KDPNSLANLDQDLP---NYAQHTVPIFSLPQEWLWCESWC----GNATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWPD 1114 (1162)
Q Consensus 1042 ~~~~sl~~~DQDll---N~~~~~~~I~~Lp~~wN~~~~~~----~~e~~~~akiI~~~~np~tk~~kl~~a~r~~~~w~~ 1114 (1162)
....+.+.|||+| |.+|.+ .++.||.+||++..-+ ..+..+.|++|||+++ .|+|.-....++.+.|..
T Consensus 441 -~~~~l~l~DQdaLp~~livf~g-~v~~LD~rWN~~gLgy~~~~~~~~i~~aaIIHY~G~--~KPW~~~~~~~yr~~W~k 516 (533)
T PLN02870 441 -LKSNLTMWKLGTLPPALIAFKG-HVHPIDPSWHMLGLGYQSKTNIESVKKAAVIHYNGQ--SKPWLEIGFEHLRPFWTK 516 (533)
T ss_pred -hhcCceecccccccHhHHHhcC-ceEECChHHhcCCCCCcccccccccCCcEEEEECCC--CCCccccCccchhHHHHH
Confidence 1234667899999 467775 8999999999875322 1234578999999985 365643344456778888
Q ss_pred hhHHHHHHHH
Q 001078 1115 LDSEARQFTA 1124 (1162)
Q Consensus 1115 ~d~~~~~~~~ 1124 (1162)
|.+.-..++.
T Consensus 517 Yl~~s~~fl~ 526 (533)
T PLN02870 517 YVNYSNDFIR 526 (533)
T ss_pred HHccCchHhh
Confidence 8665555544
No 16
>PLN02659 Probable galacturonosyltransferase
Probab=99.95 E-value=1.2e-27 Score=278.44 Aligned_cols=260 Identities=16% Similarity=0.220 Sum_probs=172.1
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHcCCC--CeEEEEEeCCCCh-hHHHHHHHHHHhcCcEEEEEEecCCccccc-----
Q 001078 855 INIFSIASGHLYERFLKIMILSVLKNTCR--PVKFWFIKNYLSP-QFKDVIPHMAQEYGFEYELITYKWPTWLHK----- 926 (1162)
Q Consensus 855 InIf~vasg~~Y~~~l~v~I~SIl~nt~~--~v~f~Il~~~lS~-~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~----- 926 (1162)
.+=+++.||. .--+.|.+.|-+.|.++ ++.|||+++.+.= ..+.++. +..--+..|+..+++=-.||..
T Consensus 207 l~Hy~ifSdN--vLAasVVvnStv~~a~~p~~~VFHivTD~~ny~aM~~WF~-~n~~~~a~v~V~~~e~f~wl~~~~~pv 283 (534)
T PLN02659 207 YFHFVLASDN--ILAASVVANSLVQNALRPHKFVLHIITDRKTYSPMQAWFS-LHPLSPAIIEVKALHHFDWFAKGKVPV 283 (534)
T ss_pred cceEEEEecc--eeEEEeeeehhhhcccCccceEEEEecCccccHHHHHHHh-hCCCccceEEEEeehhcccccccccHH
Confidence 3334555664 23457778888888764 5889998886652 2222221 1111144554444420011110
Q ss_pred --c-----------------------------------cccccH-HHHHHHHhhcccCCCCCCeEEEEeCCeeecCCchH
Q 001078 927 --Q-----------------------------------KEKQRI-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGE 968 (1162)
Q Consensus 927 --~-----------------------------------~~~~r~-~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~e 968 (1162)
| +...++ +.+|+||+||++|| +++||||||+|+||++||++
T Consensus 284 l~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ylS~~nY~RL~IPeLLP-~LdKVLYLD~DVVVqgDLse 362 (534)
T PLN02659 284 LEAMEKDQRVRSQFRGGSSAIVANNTEKPHVIAAKLQALSPKYNSVMNHIRIHLPELFP-SLNKVVFLDDDIVVQTDLSP 362 (534)
T ss_pred HHHHhhhhhhhhhhcccccccccccccCccccccccccCCccceeHHHHHHHHHHHHhh-hcCeEEEeeCCEEEcCchHH
Confidence 0 001122 38999999999999 69999999999999999999
Q ss_pred HHhcCCCCCeEEEeeccCCCCCCC-Cccc-----ccchhhhhhcC-CCCeeeeeeeeEehHHHHHhcHHHHHHHHHHHhc
Q 001078 969 LYDMDIKGRPLAYTPFCDNNKDMD-GYRF-----WRQGFWKDHLR-GRPYHISALYVVDLKRFRETAAGDNLRVFYETLS 1041 (1162)
Q Consensus 969 L~~~Dl~g~~~Aav~d~~~~~~~~-g~~~-----w~~gyw~~~L~-~~~YfNSGV~liNL~~~R~~~~~dkl~~~~~~ls 1041 (1162)
||++||+|+++|||+||....... ..++ +......+.+. +.|||||||+||||++||++++++++..++++
T Consensus 363 Lw~iDL~gkv~AAVeDc~~~d~~~~~~~~~~yL~~s~p~i~~yFn~~~cYfNsGVlLINLk~WRe~nITek~l~~l~~-- 440 (534)
T PLN02659 363 LWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYLNFSHPLIAKNFDPNECAWAYGMNIFDLEAWRKTNISSTYHHWLEE-- 440 (534)
T ss_pred HHhCCCCCcEEEEeeccccccchhhhHHHHHhhcccchhhhhccCccccceecceeEeeHHHHHhcChHHHHHHHHHh--
Confidence 999999999999999995310000 0000 00011122233 57899999999999999999999999999874
Q ss_pred cCC-CCCCCCCCChhh---hccccCceeecCCccccccCCCC----ccccCCCeEEeccCCCCCCChhhHhhhcccccCc
Q 001078 1042 KDP-NSLANLDQDLPN---YAQHTVPIFSLPQEWLWCESWCG----NATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWP 1113 (1162)
Q Consensus 1042 ~~~-~sl~~~DQDllN---~~~~~~~I~~Lp~~wN~~~~~~~----~e~~~~akiI~~~~np~tk~~kl~~a~r~~~~w~ 1113 (1162)
+. ..+...|||+|| .+|.+ .++.||.+||+....+. .+..+.+.+|||+++. |+|.--.-.++++.|.
T Consensus 441 -n~~~~l~l~DQdaLp~~LivF~g-~v~~LD~rWN~~gLg~~~~~~~~~i~~paIIHYnG~~--KPW~~~~~~~yr~~W~ 516 (534)
T PLN02659 441 -NLKSDLSLWQLGTLPPGLIAFHG-HVHVIDPFWHMLGLGYQENTSLADAESAGVVHFNGRA--KPWLDIAFPQLRPLWA 516 (534)
T ss_pred -cccccccccccccchHHHHHhcC-CEEECChhheecCCcccccccccccCCcEEEEECCCC--CccccccCCcchhHHH
Confidence 22 346678999994 66775 89999999998653321 2345789999999953 5554444456778898
Q ss_pred hhhHHHHHHHH
Q 001078 1114 DLDSEARQFTA 1124 (1162)
Q Consensus 1114 ~~d~~~~~~~~ 1124 (1162)
.|-+.-..++.
T Consensus 517 kYl~~s~~fl~ 527 (534)
T PLN02659 517 KYIDSSDKFIK 527 (534)
T ss_pred HHhccCCHHHH
Confidence 87555444443
No 17
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=99.95 E-value=8.4e-28 Score=262.37 Aligned_cols=231 Identities=23% Similarity=0.281 Sum_probs=164.4
Q ss_pred EEEEEecCcchHHHHHHHHHHHHHcCC--CCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCccc----ccccc
Q 001078 856 NIFSIASGHLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWL----HKQKE 929 (1162)
Q Consensus 856 nIf~vasg~~Y~~~l~v~I~SIl~nt~--~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L----~~~~~ 929 (1162)
||+.+ +|.+|..++.++++|+++|++ ..++||+++++++++.++.|......+.....+.... ...+ .....
T Consensus 1 ~i~~~-~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 78 (250)
T PF01501_consen 1 HIVLA-CDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIEIEPIEFPD-ISMLEEFQFNSPS 78 (250)
T ss_dssp -EEEE-CSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCTTECEEETS-GGHHH--TTS-HC
T ss_pred CEEEE-eCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccceeeeccch-HHhhhhhhhcccc
Confidence 67665 688999999999999999998 5799999999999999999988776553222122111 1111 11122
Q ss_pred cccH-HHHHHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHhcCCCCCeEEEeeccCCCCCCCCcccccchhhh---hh
Q 001078 930 KQRI-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWK---DH 1005 (1162)
Q Consensus 930 ~~r~-~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~Dl~g~~~Aav~d~~~~~~~~g~~~w~~gyw~---~~ 1005 (1162)
..+. ..+|.||+++.+|| +++||||||+|++|.+||.+||+++++++++|+++++... .++...++. ..
T Consensus 79 ~~~~~~~~~~rl~i~~ll~-~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~~~~~------~~~~~~~~~~~~~~ 151 (250)
T PF01501_consen 79 KRHFSPATFARLFIPDLLP-DYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVEDESFD------NFPNKRFPFSERKQ 151 (250)
T ss_dssp CTCGGGGGGGGGGHHHHST-TSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE----H------HHHTSTTSSEEECE
T ss_pred cccccHHHHHHhhhHHHHh-hcCeEEEEcCCeeeecChhhhhcccchhhhccccccchhh------hhhhcccchhhccc
Confidence 2333 48899999999996 7999999999999999999999999999999999883211 011111111 11
Q ss_pred cCCCCeeeeeeeeEehHHHHHhcHHHHHHHHHHHhccCCCCCCCCCCChhhhccccCceeecCCccccccCCC------C
Q 001078 1006 LRGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQEWLWCESWC------G 1079 (1162)
Q Consensus 1006 L~~~~YfNSGV~liNL~~~R~~~~~dkl~~~~~~ls~~~~sl~~~DQDllN~~~~~~~I~~Lp~~wN~~~~~~------~ 1079 (1162)
....+||||||||+|+++||+.++.++++.+++. +...+...||+++|.+|.+ .+..||.+||++..|+ .
T Consensus 152 ~~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~DQ~~ln~~~~~-~~~~L~~~~N~~~~~~~~~~~~~ 227 (250)
T PF01501_consen 152 PGNKPYFNSGVMLFNPSKWRKENILQKLIEWLEQ---NGMKLGFPDQDILNIVFYG-NIKPLPCRYNCQPSWYNQSDDYF 227 (250)
T ss_dssp STTTTSEEEEEEEEEHHHHHHHHHHHHHHHHHHH---TTTT-SSCHHHHHHHHHTT-GEEEEEGGGSEEHHHHHHTHHHH
T ss_pred CcccccccCcEEEEeechhhhhhhhhhhhhhhhh---cccccCcCchHHHhhhccc-eeEEECchhccccccccccchhh
Confidence 2357999999999999999999999999999763 3446778999999999995 9999999999998877 2
Q ss_pred ccccCCCeEEeccCCCCCCChh
Q 001078 1080 NATKSKAKTIDLCNNPMTKEPK 1101 (1162)
Q Consensus 1080 ~e~~~~akiI~~~~np~tk~~k 1101 (1162)
......+++|||++. .|+|+
T Consensus 228 ~~~~~~~~iiHy~g~--~KPW~ 247 (250)
T PF01501_consen 228 NPILEDAKIIHYSGP--PKPWK 247 (250)
T ss_dssp HHHGCC-SEEE--SS--S-TTS
T ss_pred HhhcCCeEEEEeCCC--CcCCC
Confidence 334688999999983 35553
No 18
>PLN02769 Probable galacturonosyltransferase
Probab=99.94 E-value=1.9e-27 Score=281.55 Aligned_cols=254 Identities=17% Similarity=0.211 Sum_probs=173.9
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHcCC--CCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEe---cCCcc----cc
Q 001078 855 INIFSIASGHLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITY---KWPTW----LH 925 (1162)
Q Consensus 855 InIf~vasg~~Y~~~l~v~I~SIl~nt~--~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~---~wp~~----L~ 925 (1162)
.+=+++.||. .--+.+.|.|.+.|++ +++.|||+++..+-.-+...-....--+..|+..++ .|... ++
T Consensus 330 l~Hy~ifSdN--vlAasvvvNStv~na~~p~~~VFHiVTD~~n~~am~~WF~~n~~~~a~v~v~n~e~~~~~~~~~~~~~ 407 (629)
T PLN02769 330 LRHYVIFSKN--VLAASVVINSTVVHSRESGNIVFHVLTDAQNYYAMKHWFDRNSYKEAAVQVLNIEDLILKDLDKFALK 407 (629)
T ss_pred cceEEEEecc--ceeeeeehhhhhhhccCccceEEEEecChhhHHHHHHHHhcCCCccceEEEeeeeeeeecccchHHHH
Confidence 4445566775 3457899999999998 579999999866533222211111112445554444 34210 00
Q ss_pred c--------------------ccccccH-HHHHHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHhcCCCCCeEEEeec
Q 001078 926 K--------------------QKEKQRI-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPF 984 (1162)
Q Consensus 926 ~--------------------~~~~~r~-~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~Dl~g~~~Aav~d 984 (1162)
. +....++ ..+|.|||||++|| +++||||||+|+||++||++||++||+|+++|||++
T Consensus 408 ~l~~~~~~~~~~~~~~~~~~~~~~~eyiS~~nh~RfyIPELLP-~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAVed 486 (629)
T PLN02769 408 QLSLPEEFRVSFRSVDNPSSKQMRTEYLSVFSHSHFLLPEIFK-KLKKVVVLDDDVVVQRDLSFLWNLDMGGKVNGAVQF 486 (629)
T ss_pred hhccchhhhhhhccCCCCchhccCcccccHHHHHHHHHHHHhh-hcCeEEEEeCCEEecCcHHHHhcCCCCCCeEEEehh
Confidence 0 0011223 38999999999999 699999999999999999999999999999999999
Q ss_pred cCCCCCCCCcccccchhhhhhcCCCCeeeeeeeeEehHHHHHhcHHHHHHHHHHHhcc-CCCCCCCCCCChhhhccccCc
Q 001078 985 CDNNKDMDGYRFWRQGFWKDHLRGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSK-DPNSLANLDQDLPNYAQHTVP 1063 (1162)
Q Consensus 985 ~~~~~~~~g~~~w~~gyw~~~L~~~~YfNSGV~liNL~~~R~~~~~dkl~~~~~~ls~-~~~sl~~~DQDllN~~~~~~~ 1063 (1162)
|..+-...+ .|....+ .-+..||||+|||||||++||++++++++..+++++.. +...+...+|+++|.+|.+ .
T Consensus 487 c~~rl~~~~-~yl~~~~---F~~~~CyFNSGVLLINL~~WRk~nITe~~~~~~~~~~~~~~~~~~~~~Lp~lnlvF~g-~ 561 (629)
T PLN02769 487 CGVRLGQLK-NYLGDTN---FDTNSCAWMSGLNVIDLDKWRELDVTETYLKLLQKFSKDGEESLRAAALPASLLTFQD-L 561 (629)
T ss_pred hhhhhhhhh-hhhcccC---CCccccccccCeeEeeHHHHHHhCHHHHHHHHHHHhhhcccccccccCcCHHHHHhcC-e
Confidence 963210000 0111111 12457999999999999999999999999998876543 2344555677777889986 8
Q ss_pred eeecCCccccccCC----CCccccCCCeEEeccCCCCCCChhhHhhhcccccCchhhHH
Q 001078 1064 IFSLPQEWLWCESW----CGNATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWPDLDSE 1118 (1162)
Q Consensus 1064 I~~Lp~~wN~~~~~----~~~e~~~~akiI~~~~np~tk~~kl~~a~r~~~~w~~~d~~ 1118 (1162)
++.||.+||++.-. ...+....++||||+++ .|+|.-..-.++.+.|+.|-+.
T Consensus 562 v~~LD~rWNv~gLG~~~~i~~~~i~~paIIHYnG~--~KPW~e~~i~~yr~~W~kYl~~ 618 (629)
T PLN02769 562 IYPLDDRWVLSGLGHDYGIDEQAIKKAAVLHYNGN--MKPWLELGIPKYKKYWKRFLNR 618 (629)
T ss_pred EEECCHHHccccccccccccccccCCcEEEEECCC--CCCccCCCCChHHHHHHHHhcc
Confidence 99999999986421 23345679999999985 3555433335677888877443
No 19
>PLN02867 Probable galacturonosyltransferase
Probab=99.94 E-value=5.6e-27 Score=273.95 Aligned_cols=253 Identities=15% Similarity=0.238 Sum_probs=168.6
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHcCCC--CeEEEEEeCCCChh-HHHHHHHHHHhcCcEEEEEEe---cCCcc-----
Q 001078 855 INIFSIASGHLYERFLKIMILSVLKNTCR--PVKFWFIKNYLSPQ-FKDVIPHMAQEYGFEYELITY---KWPTW----- 923 (1162)
Q Consensus 855 InIf~vasg~~Y~~~l~v~I~SIl~nt~~--~v~f~Il~~~lS~~-~k~~L~~l~~~~~~~i~fv~~---~wp~~----- 923 (1162)
.+=+++.||. .--+.|.+.|-+.|.++ ++.|||+++.+.=. .+.++ .+..--+..|+...+ +|-..
T Consensus 211 ~~Hy~ifSdN--vLAasVvvnStv~~a~~p~~~VfHvvTD~~ny~aM~~WF-~~n~~~~a~v~V~~~~~f~wl~~~~~~v 287 (535)
T PLN02867 211 FHHVVLLTDN--VLAASVVISSTVQNAANPEKLVFHIVTDKKTYTPMHAWF-AINSIKSAVVEVKGLHQYDWSQEVNVGV 287 (535)
T ss_pred cceEEEEecc--eeEEEeeeehhhhcccCccceEEEEecCccccHHHHHHH-hhCCCccceEEEEeehhccccccccccH
Confidence 4444555664 23457788888888764 58899999866522 22222 121111445554443 34210
Q ss_pred ---c-----------ccc-----------------cccccH-HHHHHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHh
Q 001078 924 ---L-----------HKQ-----------------KEKQRI-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYD 971 (1162)
Q Consensus 924 ---L-----------~~~-----------------~~~~r~-~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~ 971 (1162)
+ +.. +....+ ..+|+||+||++|| +++||||||+|+||++||++||+
T Consensus 288 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkylS~lnYlRflIPeLLP-~LdKVLYLD~DVVVqgDLseLwd 366 (535)
T PLN02867 288 KEMLEIHRLIWSHYYQNLKESDFQFEGTHKRSLEALSPSCLSLLNHLRIYIPELFP-DLNKIVFLDDDVVVQHDLSSLWE 366 (535)
T ss_pred HHHHHHhhhhhhhhhccccccccccccccccchhhcChhhhhHHHHHHHHHHHHhh-ccCeEEEecCCEEEcCchHHHHh
Confidence 0 000 001122 37999999999999 69999999999999999999999
Q ss_pred cCCCCCeEEEeec--cCCCCCCCCccc---c--cchhhhhhc-CCCCeeeeeeeeEehHHHHHhcHHHHHHHHHHHhccC
Q 001078 972 MDIKGRPLAYTPF--CDNNKDMDGYRF---W--RQGFWKDHL-RGRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKD 1043 (1162)
Q Consensus 972 ~Dl~g~~~Aav~d--~~~~~~~~g~~~---w--~~gyw~~~L-~~~~YfNSGV~liNL~~~R~~~~~dkl~~~~~~ls~~ 1043 (1162)
+||+|+++|||.| |... ...|.++ . ...+-...+ ++.||||||||||||++||++++++++..+++.. .
T Consensus 367 iDL~gkviaAV~D~~c~~~-~~~~~~~~~YlNfsnp~i~~~~~p~~cYFNSGVmLINL~~WRe~nITek~~~~Le~n--~ 443 (535)
T PLN02867 367 LDLNGKVVGAVVDSWCGDN-CCPGRKYKDYLNFSHPLISSNLDQERCAWLYGMNVFDLKAWRRTNITEAYHKWLKLS--L 443 (535)
T ss_pred CcCCCCeEEEEeccccccc-cccchhhhhhccccchhhhccCCCCCcceecceeeeeHHHHHHhcHHHHHHHHHHhc--h
Confidence 9999999999976 3311 0111111 0 011101122 3579999999999999999999999999998742 1
Q ss_pred CCCCCCCCCChhhh---ccccCceeecCCccccccCC-----CCccccCCCeEEeccCCCCCCChhhHhhhcccccCchh
Q 001078 1044 PNSLANLDQDLPNY---AQHTVPIFSLPQEWLWCESW-----CGNATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWPDL 1115 (1162)
Q Consensus 1044 ~~sl~~~DQDllN~---~~~~~~I~~Lp~~wN~~~~~-----~~~e~~~~akiI~~~~np~tk~~kl~~a~r~~~~w~~~ 1115 (1162)
...+...|||.||. +|.+ .++.||.+||++.-. ...+..+.++||||+++ .|+|+-....++++.|..|
T Consensus 444 ~~~~~l~dqd~LN~~LlvF~g-~v~~LD~rWNv~gLgy~~~~~~~~~i~~paIIHYnG~--~KPW~e~~~~~yR~~W~ky 520 (535)
T PLN02867 444 NSGLQLWQPGALPPALLAFKG-HVHPIDPSWHVAGLGSRPPEVPREILESAAVLHFSGP--AKPWLEIGFPEVRSLWYRH 520 (535)
T ss_pred hcccccccccccchHHHHhcC-cEEECChhhcccCCCcccccchhhhcCCcEEEEECCC--CCcccccCCCchhHHHHHh
Confidence 12245579999996 7775 899999999986421 12234578999999985 3666655667788889876
Q ss_pred hH
Q 001078 1116 DS 1117 (1162)
Q Consensus 1116 d~ 1117 (1162)
-+
T Consensus 521 l~ 522 (535)
T PLN02867 521 VN 522 (535)
T ss_pred cC
Confidence 43
No 20
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=99.93 E-value=2.9e-26 Score=268.86 Aligned_cols=252 Identities=16% Similarity=0.242 Sum_probs=174.6
Q ss_pred eeEEEEEecCcchHHHHHHHHHHHHHcCCC--CeEEEEEeCCCChh-HHHHHHHHHHhcCcEEEEEEe---cCCc-----
Q 001078 854 TINIFSIASGHLYERFLKIMILSVLKNTCR--PVKFWFIKNYLSPQ-FKDVIPHMAQEYGFEYELITY---KWPT----- 922 (1162)
Q Consensus 854 ~InIf~vasg~~Y~~~l~v~I~SIl~nt~~--~v~f~Il~~~lS~~-~k~~L~~l~~~~~~~i~fv~~---~wp~----- 922 (1162)
..+=+++.||. .--+.|.+.|-+.|.++ ++.|||+++.+.=. .+.++. +..--+..|+..++ +|-.
T Consensus 344 ~l~Hy~ifSDN--VLAaSVVVnSTv~na~~P~k~VFHiVTD~~ny~aM~~WF~-~n~~~~A~V~V~nie~f~wln~~~~p 420 (657)
T PLN02910 344 SLYHYAIFSDN--VLATSVVVNSTVLHAKEPQKHVFHIVTDKLNFAAMKMWFI-INPPAKATIQVENIDDFKWLNSSYCS 420 (657)
T ss_pred cceeEEEEecc--eeeEEeehhhhhhcccCccceEEEEecCccccHHHHHHHh-hCCCccceEEEeehhhcccccccccH
Confidence 34445566765 33467889999988864 68999999876622 222221 22112455555544 3311
Q ss_pred cccc---------------c--------ccc----ccH-HHHHHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHhcCC
Q 001078 923 WLHK---------------Q--------KEK----QRI-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDI 974 (1162)
Q Consensus 923 ~L~~---------------~--------~~~----~r~-~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~Dl 974 (1162)
.++. . ..+ ..+ +.+|+|||||++|| +++||||||+|+||++||++||++||
T Consensus 421 vl~qles~~~~~~yf~~~~~~~~~~~~~~~k~r~p~ylS~lnY~Rf~LPelLp-~l~KVLYLD~DVVV~gDLseLw~iDL 499 (657)
T PLN02910 421 VLRQLESARIKEYYFKANHPSSLSAGADNLKYRNPKYLSMLNHLRFYLPEVYP-KLEKILFLDDDIVVQKDLTPLWSIDM 499 (657)
T ss_pred HHHHHhhhhhhhhhhhccccccccccccccccCCcchhhHHHHHHHHHHHHhh-hcCeEEEEeCCEEecCchHHHHhCCc
Confidence 0110 0 001 112 37899999999999 69999999999999999999999999
Q ss_pred CCCeEEEeeccCCC-CCCCCcccccchhhhhhcC-CCCeeeeeeeeEehHHHHHhcHHHHHHHHHHHhccCCCCCCCCCC
Q 001078 975 KGRPLAYTPFCDNN-KDMDGYRFWRQGFWKDHLR-GRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQ 1052 (1162)
Q Consensus 975 ~g~~~Aav~d~~~~-~~~~g~~~w~~gyw~~~L~-~~~YfNSGV~liNL~~~R~~~~~dkl~~~~~~ls~~~~sl~~~DQ 1052 (1162)
+|+++||+++|... .+.....+|.....++.+. ..||||+|||||||++||+.++++ +..+++++. ......||
T Consensus 500 ~g~v~AAVedc~~~f~r~~~ylnfs~P~i~~yFNs~aCyfNsGVmVIDL~~WRe~nITe-~ye~w~eln---~~~~L~dq 575 (657)
T PLN02910 500 QGMVNGAVETCKESFHRFDKYLNFSNPKISENFDPNACGWAFGMNMFDLKEWRKRNITG-IYHYWQDLN---EDRTLWKL 575 (657)
T ss_pred CCceEEEecccchhhhhhhhhhccCChhhhhccCCCCceeecccEEEeHHHHHHhhHHH-HHHHHHHhc---cccccccc
Confidence 99999999999642 1111122232222223343 579999999999999999999999 555666542 33556799
Q ss_pred Chhh---hccccCceeecCCccccccCCCC----ccccCCCeEEeccCCCCCCChhhHhh-hcccccCchhhH
Q 001078 1053 DLPN---YAQHTVPIFSLPQEWLWCESWCG----NATKSKAKTIDLCNNPMTKEPKLQGA-RRIVSEWPDLDS 1117 (1162)
Q Consensus 1053 DllN---~~~~~~~I~~Lp~~wN~~~~~~~----~e~~~~akiI~~~~np~tk~~kl~~a-~r~~~~w~~~d~ 1117 (1162)
+.|| .+|.+ .+++||.+||.+.-.++ .+..+.|.+|||+++. +||++.+ .++.+.|..|-+
T Consensus 576 gsLPpgLLvF~g-~i~pLD~rWNv~GLGyd~~v~~~~i~~AAVLHynG~~---KPWl~l~i~~Yr~~W~kYl~ 644 (657)
T PLN02910 576 GSLPPGLITFYN-LTYPLDRSWHVLGLGYDPALNQTEIENAAVVHYNGNY---KPWLDLAIAKYKPYWSRYVQ 644 (657)
T ss_pred CCCChHHHHHhC-ceeecCchheecCCCCCcccccccccCcEEEEeCCCC---CcccccCcccchHHHHHHcc
Confidence 9999 57775 89999999999874432 3457889999999964 5666665 578888987743
No 21
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=99.86 E-value=7.2e-21 Score=209.58 Aligned_cols=203 Identities=18% Similarity=0.177 Sum_probs=148.5
Q ss_pred EEEEecCcchHHHHHHHHHHHHHcCCCCeEEEEEe-CCCChhHHHHHHHHHHhcCcEEEEEE-ecCCcccccccccccHH
Q 001078 857 IFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIK-NYLSPQFKDVIPHMAQEYGFEYELIT-YKWPTWLHKQKEKQRII 934 (1162)
Q Consensus 857 If~vasg~~Y~~~l~v~I~SIl~nt~~~v~f~Il~-~~lS~~~k~~L~~l~~~~~~~i~fv~-~~wp~~L~~~~~~~r~~ 934 (1162)
-++++++.+|..++.+++.||++|++ .++++++. ++++++.++.|+.+ +..+..+. ++.+.... .....+..
T Consensus 3 y~t~~~~~~Y~~~a~vl~~SL~~~~~-~~~~~vl~~~~is~~~~~~L~~~----~~~~~~v~~i~~~~~~~-~~~~~~~~ 76 (240)
T cd02537 3 YVTLLTNDDYLPGALVLGYSLRKVGS-SYDLVVLVTPGVSEESREALEEV----GWIVREVEPIDPPDSAN-LLKRPRFK 76 (240)
T ss_pred EEEEecChhHHHHHHHHHHHHHhcCC-CCCEEEEECCCCCHHHHHHHHHc----CCEEEecCccCCcchhh-hccchHHH
Confidence 35667888999999999999999977 46777766 57999999888865 33333222 23222111 11123335
Q ss_pred HHHHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHhcCCCCCeEEEeeccCCCCCCCCcccccchhhhhhcCCCCeeee
Q 001078 935 WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHIS 1014 (1162)
Q Consensus 935 ~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~Dl~g~~~Aav~d~~~~~~~~g~~~w~~gyw~~~L~~~~YfNS 1014 (1162)
.+|.||+++.+. +++||||||+|++|.+||.+||++ +..+||++++. | ..||||
T Consensus 77 ~~~~kl~~~~l~--~~drvlylD~D~~v~~~i~~Lf~~---~~~~~a~~d~~---------------~------~~~fNs 130 (240)
T cd02537 77 DTYTKLRLWNLT--EYDKVVFLDADTLVLRNIDELFDL---PGEFAAAPDCG---------------W------PDLFNS 130 (240)
T ss_pred HHhHHHHhcccc--ccceEEEEeCCeeEccCHHHHhCC---CCceeeecccC---------------c------cccccc
Confidence 789999999975 499999999999999999999987 56788887652 1 259999
Q ss_pred eeeeEehHHHHHhcHHHHHHHHHHHhccCCCCCCCCCCChhhhccccCc--eeecCCccccccCCCCc-----cccCCCe
Q 001078 1015 ALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVP--IFSLPQEWLWCESWCGN-----ATKSKAK 1087 (1162)
Q Consensus 1015 GV~liNL~~~R~~~~~dkl~~~~~~ls~~~~sl~~~DQDllN~~~~~~~--I~~Lp~~wN~~~~~~~~-----e~~~~ak 1087 (1162)
|||++|+.. ...+++++.++. . .++...|||+||.++.+ . +..||++||++..++.. .....++
T Consensus 131 Gv~l~~~~~----~~~~~~~~~~~~---~-~~~~~~DQdiLN~~~~~-~~~~~~l~~~yN~~~~~~~~~~~~~~~~~~~~ 201 (240)
T cd02537 131 GVFVLKPSE----ETFNDLLDALQD---T-PSFDGGDQGLLNSYFSD-RGIWKRLPFTYNALKPLRYLHPEALWFGDEIK 201 (240)
T ss_pred eEEEEcCCH----HHHHHHHHHHhc---c-CCCCCCCHHHHHHHHcC-CCCEeECCcceeeehhhhccCchhhcccCCcE
Confidence 999999854 456667766652 2 23667899999999986 6 99999999998654321 2246789
Q ss_pred EEeccCCCCCCChhh
Q 001078 1088 TIDLCNNPMTKEPKL 1102 (1162)
Q Consensus 1088 iI~~~~np~tk~~kl 1102 (1162)
+|||++.+ |+|+.
T Consensus 202 iiHf~g~~--KPW~~ 214 (240)
T cd02537 202 VVHFIGGD--KPWSW 214 (240)
T ss_pred EEEEeCCC--CCCCC
Confidence 99999853 66653
No 22
>PLN00176 galactinol synthase
Probab=99.86 E-value=6.9e-21 Score=216.20 Aligned_cols=245 Identities=15% Similarity=0.167 Sum_probs=156.8
Q ss_pred ecCcchHHHHHHHHHHHHHcCCCCeEEEEE-eCCCChhHHHHHHHHHHhcCcEEEEEEecCCcccccccccccHHHHHHH
Q 001078 861 ASGHLYERFLKIMILSVLKNTCRPVKFWFI-KNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKI 939 (1162)
Q Consensus 861 asg~~Y~~~l~v~I~SIl~nt~~~v~f~Il-~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r~~~~Y~R 939 (1162)
+++..|..++.++.+||.++. +...+.++ +++++++.++.|. +.+..|.-+..--|..-..+....+...+|.|
T Consensus 30 ~~n~~Y~~Ga~vL~~SLr~~~-s~~~lVvlVt~dVp~e~r~~L~----~~g~~V~~V~~i~~~~~~~~~~~~~~~i~~tK 104 (333)
T PLN00176 30 AGNGDYVKGVVGLAKGLRKVK-SAYPLVVAVLPDVPEEHRRILV----SQGCIVREIEPVYPPENQTQFAMAYYVINYSK 104 (333)
T ss_pred ecCcchHHHHHHHHHHHHHhC-CCCCEEEEECCCCCHHHHHHHH----HcCCEEEEecccCCcccccccccchhhhhhhh
Confidence 456799999999999998774 34444443 4889998876665 34666644332112111111111233457889
Q ss_pred HhhcccCCCCCCeEEEEeCCeeecCCchHHHhcCCCCCeEEEeeccCCCCCC-CCcccccchh---------hhhhcC--
Q 001078 940 LFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDM-DGYRFWRQGF---------WKDHLR-- 1007 (1162)
Q Consensus 940 LfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~Dl~g~~~Aav~d~~~~~~~-~g~~~w~~gy---------w~~~L~-- 1007 (1162)
|.+..+. +++||||||+|++|.++|.|||+++. ..+|||.||...+.. ...++| .|| |...++
T Consensus 105 l~iw~l~--~ydkvlyLDaD~lv~~nid~Lf~~~~--~~~aAV~dc~~~~~~~~~p~~~-~~~c~~~~~~~~wp~~~g~~ 179 (333)
T PLN00176 105 LRIWEFV--EYSKMIYLDGDIQVFENIDHLFDLPD--GYFYAVMDCFCEKTWSHTPQYK-IGYCQQCPDKVTWPAELGPP 179 (333)
T ss_pred hhhcccc--ccceEEEecCCEEeecChHHHhcCCC--cceEEEeccccccccccccccc-ccccccchhhccchhhccCC
Confidence 9999976 59999999999999999999998843 368999998532110 001122 122 211222
Q ss_pred CCCeeeeeeeeEehHHHHHhcHHHHHHHHHHHhccCCCCCCCCCCChhhhccccCceeecCCccccccC--CCCcc--cc
Q 001078 1008 GRPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQEWLWCES--WCGNA--TK 1083 (1162)
Q Consensus 1008 ~~~YfNSGV~liNL~~~R~~~~~dkl~~~~~~ls~~~~sl~~~DQDllN~~~~~~~I~~Lp~~wN~~~~--~~~~e--~~ 1083 (1162)
...||||||||+|.+.|+.+++. ++++. .+ ...++|||+||.+|.+ .+..||.+||++.. |+..+ ..
T Consensus 180 ~~~yFNSGVlvinps~~~~~~ll----~~l~~---~~-~~~f~DQD~LN~~F~~-~~~~Lp~~YN~~~~~~~~~~~~~~~ 250 (333)
T PLN00176 180 PPLYFNAGMFVFEPSLSTYEDLL----ETLKI---TP-PTPFAEQDFLNMFFRD-IYKPIPPVYNLVLAMLWRHPENVEL 250 (333)
T ss_pred CCCeEEeEEEEEEcCHHHHHHHH----HHHHh---cC-CCCCCCHHHHHHHHcC-cEEECCchhcCchhhhhhChhhccc
Confidence 24699999999999999976644 44432 22 3567999999999996 88899999999753 32221 13
Q ss_pred CCCeEEeccCCCCCCChhhH---------hhhcccccCc-hhhHHHHHHHHH
Q 001078 1084 SKAKTIDLCNNPMTKEPKLQ---------GARRIVSEWP-DLDSEARQFTAK 1125 (1162)
Q Consensus 1084 ~~akiI~~~~np~tk~~kl~---------~a~r~~~~w~-~~d~~~~~~~~~ 1125 (1162)
..+++||||... .|+|+.. .-+.+...|| -|+++...+...
T Consensus 251 ~~vkIIHY~~~~-~KPW~~~~~~~~~~~~~~~~~~~~Ww~~~~~~~~~~~~~ 301 (333)
T PLN00176 251 DKVKVVHYCAAG-SKPWRYTGKEENMDREDIKMLVKKWWDIYNDESLDYKNF 301 (333)
T ss_pred CCcEEEEeeCCC-CCCCCCCCcccCCChHHHHHHHHHHHHHhcccccccccc
Confidence 578999999521 2444321 1233445555 556666555433
No 23
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=99.71 E-value=1e-16 Score=178.60 Aligned_cols=207 Identities=16% Similarity=0.157 Sum_probs=148.9
Q ss_pred EecCcchHHHHHHHHHHHHHcCCCCeEEEEEe-CCCChhHHHHHHH---HHHhcCcEEEEEEecCCcccccccccccHHH
Q 001078 860 IASGHLYERFLKIMILSVLKNTCRPVKFWFIK-NYLSPQFKDVIPH---MAQEYGFEYELITYKWPTWLHKQKEKQRIIW 935 (1162)
Q Consensus 860 vasg~~Y~~~l~v~I~SIl~nt~~~v~f~Il~-~~lS~~~k~~L~~---l~~~~~~~i~fv~~~wp~~L~~~~~~~r~~~ 935 (1162)
.+++..|...+.++..|+.++.. ..+..++. +.++......+.. +....+..+..+...-+ +. ...++..
T Consensus 6 l~Tn~~YL~gAlvL~~sLr~~gs-~~dlVvLvt~~~~~~~~~~~~~~~~~l~~~~~~v~~v~~~~~----~~-~~~~~~~ 79 (278)
T cd06914 6 YATNADYLCNALILFEQLRRLGS-KAKLVLLVPETLLDRNLDDFVRRDLLLARDKVIVKLIPVIIA----SG-GDAYWAK 79 (278)
T ss_pred EecChhHHHHHHHHHHHHHHhCC-CCCEEEEECCCCChhhhhhHHHHHHHhhccCcEEEEcCcccC----CC-CCccHHH
Confidence 34678999999999999987655 45555544 6666544333221 22445666655543211 11 2345567
Q ss_pred HHHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHhcCCCCCeEEEeeccCCCCCCCCcccccchhhhhhcCCCCeeeee
Q 001078 936 AYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHISA 1015 (1162)
Q Consensus 936 ~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~Dl~g~~~Aav~d~~~~~~~~g~~~w~~gyw~~~L~~~~YfNSG 1015 (1162)
+|.||.+..+ + +++||||||||++|.++|.|||+++. ...+||+ ++ || |||||
T Consensus 80 ~~tKl~~~~l-~-~y~kvlyLDaD~l~~~~ideLf~~~~-~~~~Aap-~~---------------~~--------~FNSG 132 (278)
T cd06914 80 SLTKLRAFNQ-T-EYDRIIYFDSDSIIRHPMDELFFLPN-YIKFAAP-RA---------------YW--------KFASH 132 (278)
T ss_pred HHHHHHhccc-c-ceeeEEEecCChhhhcChHHHhcCCc-ccceeee-cC---------------cc--------eecce
Confidence 7999999998 3 69999999999999999999999884 3345553 21 23 99999
Q ss_pred eeeEehHHHHHhcHHHHHHHHHHHhccCCCCCCCCCCChhhhccccCc-------eeecCCc-ccccc------------
Q 001078 1016 LYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVP-------IFSLPQE-WLWCE------------ 1075 (1162)
Q Consensus 1016 V~liNL~~~R~~~~~dkl~~~~~~ls~~~~sl~~~DQDllN~~~~~~~-------I~~Lp~~-wN~~~------------ 1075 (1162)
|||||+++|+..++.+++..... . .....|||+||.++.+ . +..||.+ ||...
T Consensus 133 vmvi~ps~~~~~~l~~~~~~~~~---~---~~~~~DQdiLN~~~~~-~~~~~~~~~~~Lp~~~y~llt~~~r~~~~~~~l 205 (278)
T cd06914 133 LMVIKPSKEAFKELMTEILPAYL---N---KKNEYDMDLINEEFYN-SKQLFKPSVLVLPHRQYGLLTGEFREKLHKSFL 205 (278)
T ss_pred eEEEeCCHHHHHHHHHHHHHhcc---c---CCCCCChHHHHHHHhC-CccccCcceEEcCccccccCChhhcccCHHHhh
Confidence 99999999999999998888754 1 1245799999999997 6 8889997 88653
Q ss_pred --------CCCCccccCCCeEEeccCCCCCCChhhHhhh
Q 001078 1076 --------SWCGNATKSKAKTIDLCNNPMTKEPKLQGAR 1106 (1162)
Q Consensus 1076 --------~~~~~e~~~~akiI~~~~np~tk~~kl~~a~ 1106 (1162)
.|-.++....+|+|||..-|+-|+|......
T Consensus 206 ~~~~~~~~~w~~~~~~~~~k~vHFSd~Pl~KPW~~~~~~ 244 (278)
T cd06914 206 SNAQHLYEKWDPDDVFKESKVIHFSDSPLPKPWNYNNLE 244 (278)
T ss_pred ccccccccccCHHHHHhhCeEEEecCCCCCCCcCCcCHH
Confidence 2333444578999999999988888655443
No 24
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=96.72 E-value=0.043 Score=61.20 Aligned_cols=220 Identities=16% Similarity=0.138 Sum_probs=118.7
Q ss_pred cCCeeEEEEEecCcchHHHHHHHHHHHHHcC--CCCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEe----cCCccc
Q 001078 851 HGKTINIFSIASGHLYERFLKIMILSVLKNT--CRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITY----KWPTWL 924 (1162)
Q Consensus 851 ~~~~InIf~vasg~~Y~~~l~v~I~SIl~nt--~~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~----~wp~~L 924 (1162)
.+-+|-|.++|.| .|..++.--+.|.=+|- ..++++||++|.-+. ++.+.-..+.++..+.+ .||.
T Consensus 32 ~n~tIgl~vfatG-kY~~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~~~-----~p~v~lg~~r~~~V~~v~~~~~W~~-- 103 (271)
T cd02515 32 QNITIGLTVFAVG-KYTEFLERFLESAEKHFMVGYRVIYYIFTDKPAA-----VPEVELGPGRRLTVLKIAEESRWQD-- 103 (271)
T ss_pred cCCEEEEEEEEec-cHHHHHHHHHHHHHHhccCCCeeEEEEEeCCccc-----CcccccCCCceeEEEEeccccCCcH--
Confidence 3566889888887 79999999999999884 357999999974331 22221112334544444 2332
Q ss_pred ccccccccHHHHHHHHhhcccCCCCCCeEEEEeCCeeecCCch-HHHhcCCCCCeEEEeeccCCCCCCCCcccccchhhh
Q 001078 925 HKQKEKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMG-ELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWK 1003 (1162)
Q Consensus 925 ~~~~~~~r~~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~-eL~~~Dl~g~~~Aav~d~~~~~~~~g~~~w~~gyw~ 1003 (1162)
.+-++..++.......++ .++|-+.++|+|+++.+.+. |.. + ..+|...-..-.+....|.|-+..--.
T Consensus 104 ----~sl~Rm~~~~~~~~~~~~-~e~DYlF~~dvd~~F~~~ig~E~L----g-~lva~lHp~~y~~~~~~fpYERrp~S~ 173 (271)
T cd02515 104 ----ISMRRMKTLADHIADRIG-HEVDYLFCMDVDMVFQGPFGVETL----G-DSVAQLHPWWYGKPRKQFPYERRPSSA 173 (271)
T ss_pred ----HHHHHHHHHHHHHHHhhc-ccCCEEEEeeCCceEeecCCHHHh----h-hhheecChhhhcCCCCCCCCcCCCCcc
Confidence 111112222222233344 47999999999999998876 322 1 233332111101111222222111111
Q ss_pred hhc---CCCCeeeeeeeeEehHHHHHhcHHHHHHHHHH-HhccCCCCCCCCCCChhhhccccC-ceeecCCccccccCCC
Q 001078 1004 DHL---RGRPYHISALYVVDLKRFRETAAGDNLRVFYE-TLSKDPNSLANLDQDLPNYAQHTV-PIFSLPQEWLWCESWC 1078 (1162)
Q Consensus 1004 ~~L---~~~~YfNSGV~liNL~~~R~~~~~dkl~~~~~-~ls~~~~sl~~~DQDllN~~~~~~-~I~~Lp~~wN~~~~~~ 1078 (1162)
..+ .+..|+-+|++==-.+.+.+. .+.|...+. .+ ++.-.-.+.|..-||..+... |++.|+++|+|.+.+.
T Consensus 174 AyIp~~eGdfYy~Ga~~GG~~~~vl~l--~~~c~~~i~~D~-~n~I~A~wHDESHLNkYf~~~Kp~KiLSPeY~w~e~~~ 250 (271)
T cd02515 174 AYIPEGEGDFYYHGAVFGGSVEEVYRL--TRACHEGILADK-ANGIEARWHDESHLNKYFLLHKPTKVLSPEYLWDDRIG 250 (271)
T ss_pred ccccCCCCCeEEeeeecCccHHHHHHH--HHHHHHHHHHHH-hCCceEEeecHhHhHHHHhhCCCCeecChhhcCCccCC
Confidence 112 256787777763222332221 223333222 11 112222567999999988543 4899999999998654
Q ss_pred CccccCCCeEEec
Q 001078 1079 GNATKSKAKTIDL 1091 (1162)
Q Consensus 1079 ~~e~~~~akiI~~ 1091 (1162)
.....+..+++..
T Consensus 251 ~p~~~k~~r~~~~ 263 (271)
T cd02515 251 QAAEIRLPRLSWL 263 (271)
T ss_pred CCcccceeEEEEe
Confidence 4444455555544
No 25
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=96.55 E-value=0.0011 Score=73.90 Aligned_cols=148 Identities=20% Similarity=0.163 Sum_probs=85.4
Q ss_pred cccHHHHHHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHhcCCCCCeEEEeeccCC-----CCCCCCcccc-------
Q 001078 930 KQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDN-----NKDMDGYRFW------- 997 (1162)
Q Consensus 930 ~~r~~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~Dl~g~~~Aav~d~~~-----~~~~~g~~~w------- 997 (1162)
..|+...+.+|-+=..- +.|||||||+|.|++.++.+||++. -+.+++.||... .++..| -||
T Consensus 150 ~~rw~~mftKLrVfeqt--EyDRvifLDsDaivlknmDklFd~P--vyef~a~pD~~~sp~~fhrp~~~-i~~~ft~~fa 224 (368)
T COG5597 150 FHRWLDMFTKLRVFEQT--EYDRVIFLDSDAIVLKNMDKLFDYP--VYEFAAAPDVYESPADFHRPNSG-IFVSFTPAFA 224 (368)
T ss_pred cCcHHHHhHHHHhhhhh--hhceEEEeccchHHhhhhHHHhcch--hhhhccCCchhhCHHHhcCCCCc-cceeecHHHH
Confidence 34555566666655553 5999999999999999999999865 334555565321 111111 122
Q ss_pred -------------------cchhhhhhcC-CCCeeeeeeeeEehHHHHHhcHHHHHH-HHHHHhccCCCCCCCCCCChhh
Q 001078 998 -------------------RQGFWKDHLR-GRPYHISALYVVDLKRFRETAAGDNLR-VFYETLSKDPNSLANLDQDLPN 1056 (1162)
Q Consensus 998 -------------------~~gyw~~~L~-~~~YfNSGV~liNL~~~R~~~~~dkl~-~~~~~ls~~~~sl~~~DQDllN 1056 (1162)
.+++|+...+ .+-|||||+||++-.++.-..+..-.. ..|. | ...+.|.++|
T Consensus 225 ayg~~r~~ly~Pylf~a~~dq~~~hstpP~fk~~FnagLmv~~Psk~hm~riv~~alPklyd----d---a~mmeqslln 297 (368)
T COG5597 225 AYGKMRAALYAPYLFWARTDQTFLHSTPPDFKLKFNAGLMVGLPSKMHMLRIVWFALPKLYD----D---ADMMEQSLLN 297 (368)
T ss_pred hhcccHhhhccccccccccCCcccccCCCcHhhhhccCceeecchHHHHHHHHHHhhHHhhh----h---hhHHHHHHHH
Confidence 1223332222 257899999999987765433222111 1111 1 1124588888
Q ss_pred hcccc-C--ceeecCCccccccCCCCccccCCCeEEec
Q 001078 1057 YAQHT-V--PIFSLPQEWLWCESWCGNATKSKAKTIDL 1091 (1162)
Q Consensus 1057 ~~~~~-~--~I~~Lp~~wN~~~~~~~~e~~~~akiI~~ 1091 (1162)
...+. + |+-.++.+|| +-|..+..+-.-|.+|.
T Consensus 298 laYn~~g~FPwerld~~yN--G~wa~~ndlPylka~Hg 333 (368)
T COG5597 298 LAYNYEGFFPWERLDPRYN--GYWADANDLPYLKAWHG 333 (368)
T ss_pred HHHhhhccCchhhcCcccc--cccccccccchHHHhhc
Confidence 77643 3 6777888888 66765444333344444
No 26
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=96.45 E-value=1.6 Score=57.30 Aligned_cols=159 Identities=16% Similarity=0.201 Sum_probs=89.1
Q ss_pred cchhhhHHHHHHHHHHhCCCcCCceeeEeceeccCch---HHHHHHHHHHHHHHHHHHHccccCCcchHHHHH-Hhc---
Q 001078 192 KTFMDQSQESSMFVFKLGLTKLKCCLLMNGLVSESSE---EALLNAMNDELQRIQEQVYYGNINSYTDVLEKV-LSE--- 264 (1162)
Q Consensus 192 ~~~d~~~~~~~~f~~Rlgl~~~~p~vlvNGv~~~~~~---~~~~~~l~~e~~~lQ~~Vy~G~l~d~~dv~~~~-L~~--- 264 (1162)
++.-..+++-++.+++.|+.......++||..++.+. -.++..+.+|.+.+-+-.-.| | +...+...+ |..
T Consensus 335 ~~lr~ei~~nq~~~~~~~v~~g~~~L~INGl~~di~~~DlfsLld~lk~E~~~~~~f~~lg-i-~~~~l~~~l~l~~~~~ 412 (1470)
T KOG1879|consen 335 EDLRTEIEENQSKLEAKGVPPGDNALFINGLNLDIDSLDLFSLLDLLKQEKKMLNGFHNLG-I-DGEFLSKLLKLDLSKS 412 (1470)
T ss_pred HHHHHHHHHhhhhhhhcCCCCCcceeEecccccCcccccHHHHHHHHHHHHHHHHHHHhcC-C-chhHHHHhhccccCcc
Confidence 4455566667888888899766678999998888776 277888888887776665555 2 223333222 111
Q ss_pred ----ccccccCceecc--CCCCCCeEeecccccccchhhhhcCccccCCCCCCCCCceEEEEEeeCCChhhHHHHHHHHH
Q 001078 265 ----SGINRYNPQIIT--DAKVKPKFISLASSFLGRETELKDINYLHSPETVDDVKPVTHLLAVDVTSKKGMKLLHEGIR 338 (1162)
Q Consensus 265 ----na~~RrN~~I~p--~~~~~~~~~~l~~~~~~~~~l~~~~~y~~~~~~~~~~~~~t~wvv~D~~~~~g~~l~~~al~ 338 (1162)
-++.-|-..|+= +=.+..+|..+.. ..+.++. |++++--..-.-..-++.+|.|..++.++.++..|..
T Consensus 413 ~~~~~~~Dir~~~v~~vNdlEsD~~Y~~w~~---Svq~lL~--P~~PG~lr~IrkNl~nlV~vIDpa~~~~~~~l~~~~~ 487 (1470)
T KOG1879|consen 413 EKQEYAVDIRSEAVIWVNDLESDPQYDRWPS---SVQLLLK--PTFPGQLRPIRKNLFNLVFVIDPATPEDLEFLKTARN 487 (1470)
T ss_pred cccceeeecccccceeecccccchhhcchhH---HHHHHhC--CCCCCcchHHHhhheeEEEEecCCCccchHHHHHHHH
Confidence 111112111110 0011122222211 1233332 3332111111112367778899999999999988887
Q ss_pred HHhcCCCceEEEEEecCCCC
Q 001078 339 FLIGGSNGARLGVLFSASRE 358 (1162)
Q Consensus 339 ~l~~~~~~~Rv~~v~n~~~~ 358 (1162)
+. .+...+|+|+|.-..+.
T Consensus 488 f~-s~~~P~R~G~v~~~nd~ 506 (1470)
T KOG1879|consen 488 FV-SHQIPVRIGFVFIANDD 506 (1470)
T ss_pred Hh-cCCCceEEEEEEEecCC
Confidence 76 45578999999765443
No 27
>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 6 GT6 from CAZY comprises enzymes with three known activities; alpha-1,3-galactosyltransferase (2.4.1.151 from EC); alpha-1,3 N-acetylgalactosaminyltransferase (2.4.1.40 from EC); alpha-galactosyltransferase (2.4.1.37 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane; PDB: 2Y7A_B 2O1G_A 1R82_A 2RJ1_A 3IOJ_B 2RJ4_A 3I0C_A 3SX8_A 1ZJ1_A 3I0E_A ....
Probab=96.01 E-value=0.12 Score=59.45 Aligned_cols=224 Identities=15% Similarity=0.108 Sum_probs=108.2
Q ss_pred cCCeeEEEEEecCcchHHHHHHHHHHHHHcC--CCCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCccccccc
Q 001078 851 HGKTINIFSIASGHLYERFLKIMILSVLKNT--CRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQK 928 (1162)
Q Consensus 851 ~~~~InIf~vasg~~Y~~~l~v~I~SIl~nt--~~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~ 928 (1162)
.+-+|=+.++|.| .|..++.--+.|.=+|= ..+|++||++|..+ .++.+.-.-+-.+..+.+. ...+-|-
T Consensus 97 ~n~tIGL~vfA~G-kY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~p~-----~vP~i~l~~~r~~~V~~v~--~~~~Wqd 168 (337)
T PF03414_consen 97 QNITIGLTVFATG-KYIVFLKDFLESAEKHFMVGHRVIYYVFTDQPS-----KVPRIELGPGRRLKVFEVQ--EEKRWQD 168 (337)
T ss_dssp CT-EEEEEEEE-C-CHHHHHHHHHHHHHHHBSTTSEEEEEEEES-GG-----GS------TTEEEEEEE-S--GGSSHHH
T ss_pred cCceEEEEEEecc-cHHHHHHHHHHhHHHhccCCcEEEEEEEeCchh-----hCCccccCCCceeEEEEec--ccCCCcc
Confidence 4566777777777 79999999999999884 45899999997543 1233322234455555552 1111111
Q ss_pred ccccHHHHHHHHhhcccCCCCCCeEEEEeCCeeecCCchH-HHhcCCCCCeEEEeeccCCCCCCCCcccccchhhhhhc-
Q 001078 929 EKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGE-LYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHL- 1006 (1162)
Q Consensus 929 ~~~r~~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~e-L~~~Dl~g~~~Aav~d~~~~~~~~g~~~w~~gyw~~~L- 1006 (1162)
.+-+...+........++ .++|-+.++|+|+++.+++.. . | |..+|...-..-.+....|.|-+..--...+
T Consensus 169 ~sm~Rm~~i~~~i~~~~~-~EvDYLFc~dvd~~F~~~vGvE~----L-g~lva~LHp~~y~~~~~~FpYERrp~S~AyIp 242 (337)
T PF03414_consen 169 ISMMRMEMISEHIEQHIQ-HEVDYLFCMDVDMVFQDHVGVEI----L-GDLVATLHPWFYFKPRESFPYERRPKSQAYIP 242 (337)
T ss_dssp HHHHHHHHHHHHHHHCHH-HH-SEEEEEESSEEE-S-B-GGG------SSEEEEESTTTTTSTGGGS--B-STTSTTB--
T ss_pred chhHHHHHHHHHHHHHHh-hcCCEEEEEecceEEecccCHHH----H-HHHHHHhCHHHHCCChhhCccccCcccccccc
Confidence 111111222222223444 479999999999999988763 2 2 4455544221111111222222211111122
Q ss_pred --CCCCeeeeeeeeEehHHHHHhcHHHHHHHHH-HHhccCCCCCCCCCCChhhhccc-cCceeecCCccccccCCCCccc
Q 001078 1007 --RGRPYHISALYVVDLKRFRETAAGDNLRVFY-ETLSKDPNSLANLDQDLPNYAQH-TVPIFSLPQEWLWCESWCGNAT 1082 (1162)
Q Consensus 1007 --~~~~YfNSGV~liNL~~~R~~~~~dkl~~~~-~~ls~~~~sl~~~DQDllN~~~~-~~~I~~Lp~~wN~~~~~~~~e~ 1082 (1162)
.|..|+-+|++==-..+..+. .+.|...+ +.+..+... .+.|..-||..+. ..|.+.|+++|+|.+.+.....
T Consensus 243 ~~eGDfYY~ga~fGGt~~~vl~L--t~~c~~~i~~D~~n~I~A-~WhDESHLNKYfl~~KPtKvLSPEY~Wd~~~~~p~~ 319 (337)
T PF03414_consen 243 YGEGDFYYHGAFFGGTVEEVLRL--TEACHQGIMQDKANGIEA-LWHDESHLNKYFLYHKPTKVLSPEYCWDERFGWPPQ 319 (337)
T ss_dssp TT--S--EECCEEEECHHHHHHH--HHHHHHHHHHHHHTT----TTCHHHHHHHHHHHS--SEEE-GGGSBSHHHSS-TT
T ss_pred CCCCCeEEeceecCCcHHHHHHH--HHHHHHHHHhhhhcCceE-eccchhhhHHHHhhCCCceecCHHHccCccCCCCcc
Confidence 256788877775333333322 22232222 222223333 4579999999773 4579999999999887755555
Q ss_pred cCCCeEEec
Q 001078 1083 KSKAKTIDL 1091 (1162)
Q Consensus 1083 ~~~akiI~~ 1091 (1162)
.+..++++.
T Consensus 320 ik~vr~~~~ 328 (337)
T PF03414_consen 320 IKIVRFSWV 328 (337)
T ss_dssp ESSSSEEES
T ss_pred cceEEEEEe
Confidence 566666644
No 28
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=95.60 E-value=0.027 Score=63.90 Aligned_cols=109 Identities=19% Similarity=0.231 Sum_probs=70.2
Q ss_pred EEEEecCcchHHHHHHHHHHHHHcCC-CCeEEEEEe-CCCChhHHHHHHHHHHhcCcEEEEEEecCCcccccccccccHH
Q 001078 857 IFSIASGHLYERFLKIMILSVLKNTC-RPVKFWFIK-NYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRII 934 (1162)
Q Consensus 857 If~vasg~~Y~~~l~v~I~SIl~nt~-~~v~f~Il~-~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r~~ 934 (1162)
|..++ |..|...+..+|..+.+... -||.++.-. +++++++++.|.. ..++.+++.. |..........-..
T Consensus 4 IVi~~-g~~~~~~a~~lI~~LR~~g~~LPIEI~~~~~~dl~~~~~~~l~~-----~q~v~~vd~~-~~~~~~~~~~~~~~ 76 (271)
T PF11051_consen 4 IVITA-GDKYLWLALRLIRVLRRLGNTLPIEIIYPGDDDLSKEFCEKLLP-----DQDVWFVDAS-CVIDPDYLGKSFSK 76 (271)
T ss_pred EEEEe-cCccHHHHHHHHHHHHHhCCCCCEEEEeCCccccCHHHHHHHhh-----hhhhheecce-EEeecccccccccc
Confidence 44444 44777877777877776433 388888876 7899999888766 2344445443 21111111110000
Q ss_pred HHHHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHhcC
Q 001078 935 WAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMD 973 (1162)
Q Consensus 935 ~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~D 973 (1162)
..|..-.+..+|. ..+.|||||+|.|...|+..||+..
T Consensus 77 ~~~~~K~lA~l~s-sFeevllLDaD~vpl~~p~~lF~~~ 114 (271)
T PF11051_consen 77 KGFQNKWLALLFS-SFEEVLLLDADNVPLVDPEKLFESE 114 (271)
T ss_pred CCchhhhhhhhhC-CcceEEEEcCCcccccCHHHHhcCc
Confidence 1455566677785 7999999999999999999999753
No 29
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=93.14 E-value=0.21 Score=54.13 Aligned_cols=141 Identities=21% Similarity=0.211 Sum_probs=76.0
Q ss_pred HHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHhcCCCCCeEEEeeccCCCCCCCCcccccchhhhhhcCCCCeeeeee
Q 001078 937 YKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHISAL 1016 (1162)
Q Consensus 937 Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~Dl~g~~~Aav~d~~~~~~~~g~~~w~~gyw~~~L~~~~YfNSGV 1016 (1162)
.+--++-.++...+ .|+|+|+|++..+|+.+++ +-.+.-+.+..|+....... .....+|+|+
T Consensus 54 ~K~~~~~~~L~~G~-~vl~~D~Dvv~~~dp~~~~--~~~~~Di~~~~d~~~~~~~~--------------~~~~~~n~G~ 116 (212)
T PF03407_consen 54 LKPKVLLDLLELGY-DVLFSDADVVWLRDPLPYF--ENPDADILFSSDGWDGTNSD--------------RNGNLVNTGF 116 (212)
T ss_pred HHHHHHHHHHHcCC-ceEEecCCEEEecCcHHhh--ccCCCceEEecCCCcccchh--------------hcCCccccce
Confidence 34444555565554 5999999999999999999 22444455555554321100 1123459999
Q ss_pred eeEehHHHHHhcHHHHHHHHHHHhccCCCCCCCCCCChhhhcccc-------CceeecCCccc------ccc--CCCCcc
Q 001078 1017 YVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHT-------VPIFSLPQEWL------WCE--SWCGNA 1081 (1162)
Q Consensus 1017 ~liNL~~~R~~~~~dkl~~~~~~ls~~~~sl~~~DQDllN~~~~~-------~~I~~Lp~~wN------~~~--~~~~~e 1081 (1162)
|.+--.. +-..+.+.+...+. ..+. ..||.++|.++.. ..+..||...- ++. .|..-.
T Consensus 117 ~~~r~t~-~~~~~~~~w~~~~~---~~~~---~~DQ~~~n~~l~~~~~~~~~~~~~~L~~~~f~~g~~~f~~~~~~~~~~ 189 (212)
T PF03407_consen 117 YYFRPTP-RTIAFLEDWLERMA---ESPG---CWDQQAFNELLREQAARYGGLRVRFLPPSLFPNGHGYFCQSRDWAWVP 189 (212)
T ss_pred EEEecCH-HHHHHHHHHHHHHH---hCCC---cchHHHHHHHHHhcccCCcCcEEEEeCHHHeeccccceeecchhhhhc
Confidence 9984333 22222333333333 2221 1399999998865 23667776543 111 111111
Q ss_pred ccCCCeEEeccCCCCCCChhh
Q 001078 1082 TKSKAKTIDLCNNPMTKEPKL 1102 (1162)
Q Consensus 1082 ~~~~akiI~~~~np~tk~~kl 1102 (1162)
....+.++|..... .++.|+
T Consensus 190 ~~~~p~~vH~n~~~-g~~~K~ 209 (212)
T PF03407_consen 190 TKNKPYIVHANCCD-GKEGKR 209 (212)
T ss_pred cccccceEEEcCCC-ChHhHH
Confidence 13567788875433 344443
No 30
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=93.05 E-value=2.8 Score=43.59 Aligned_cols=144 Identities=8% Similarity=0.011 Sum_probs=87.1
Q ss_pred cccccEEEEEcCCCcchHHHHHHHHHHHhcc-cceEEEEEeeecccccchhccCCCCCCCCccCCCCCCCchHHHHHHHH
Q 001078 47 KNLFHAVYVLDPATVCGLEVIDMIMSLYENH-FPLRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLF 125 (1162)
Q Consensus 47 RNl~nlV~vvDps~~~~l~~l~~i~~~~~~~-iPvR~GlVp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~s~~~ar~f 125 (1162)
..=..++.+.||..+-...+-..+..++++. --+|+.++|++.. ...+...++++
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~~~------------------------~~~~~~aa~a~ 69 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVVFG------------------------GGEGEPLARAF 69 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCccc------------------------cccchHHHHHH
Confidence 3446799999999999988877777765543 2467777777543 02235567777
Q ss_pred HHHHHhhChHHHHHHHHHHHHhhhccCCCCCCchhhhhhHHhHhHhhccCCCCCCChhhhhhhhcccchhhhHHHHHHHH
Q 001078 126 LFIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFV 205 (1162)
Q Consensus 126 ~~i~~~~g~~~Al~FL~~~~~~~~~~~~~~~~~~~~~~~v~~af~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~f~ 205 (1162)
+.... .|.. ..|...++....... .+..+.+.+.+.. ... ....+.+.....+.++.+.++...+..
T Consensus 70 ~aa~~-~~~~--~~~~~~lf~~~~~~~----~~~~~~~~l~~~a-~~~-----Gl~~~~~~~~~~s~~~~~~i~~~~~~~ 136 (178)
T cd03019 70 YAAEA-LGLE--DKLHAALFEAIHEKR----KRLLDPDDIRKIF-LSQ-----GVDKKKFDAAYNSFSVKALVAKAEKLA 136 (178)
T ss_pred HHHHH-cCcH--hhhhHHHHHHHHHhC----CCCCCHHHHHHHH-HHh-----CCCHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 66544 2332 233333332211100 1111233333333 111 123345667777778888888899999
Q ss_pred HHhCCCcCCceeeEeceeccCch
Q 001078 206 FKLGLTKLKCCLLMNGLVSESSE 228 (1162)
Q Consensus 206 ~Rlgl~~~~p~vlvNGv~~~~~~ 228 (1162)
+++|+.+ .|.++|||..+....
T Consensus 137 ~~~gi~g-TPt~iInG~~~~~~~ 158 (178)
T cd03019 137 KKYKITG-VPAFVVNGKYVVNPS 158 (178)
T ss_pred HHcCCCC-CCeEEECCEEEEChh
Confidence 9999954 699999999876544
No 31
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=90.58 E-value=9.3 Score=38.93 Aligned_cols=134 Identities=12% Similarity=0.076 Sum_probs=78.8
Q ss_pred ccEEEEEcCCCcchHHHHHHHHHHHhc---ccceEEEEEeeecccccchhccCCCCCCCCccCCCCCCCchHHHHHHHHH
Q 001078 50 FHAVYVLDPATVCGLEVIDMIMSLYEN---HFPLRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLFL 126 (1162)
Q Consensus 50 ~nlV~vvDps~~~~l~~l~~i~~~~~~---~iPvR~GlVp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~s~~~ar~f~ 126 (1162)
..++.+.|+..+....+...+..++++ .=-++|-++++.-. + ..+...+.+..
T Consensus 14 ~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~---------~---------------~~~~~a~~~~~ 69 (162)
T PF13462_consen 14 ITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLD---------K---------------HSSLRAAMAAE 69 (162)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSS---------H---------------HHHHHHHHHHH
T ss_pred eEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcccc---------c---------------hhHHHHHHHHH
Confidence 468999999999999876665555444 22666666666432 0 11355566666
Q ss_pred HHHHhhChHHHHHHHHHHHHhhhccCCCCCCchhhhhhHHhHhHhhccCCCCCCChhhhhhhhcccchhhhHHHHHHHHH
Q 001078 127 FIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFVF 206 (1162)
Q Consensus 127 ~i~~~~g~~~Al~FL~~~~~~~~~~~~~~~~~~~~~~~v~~af~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~f~~ 206 (1162)
.+.+. | ..+.++.+++....... . .. ..+. .+. ......+...+.+.++...+....++.+
T Consensus 70 ~~~~~-~--~~~~~~~~~~~~~~~~~----~--~~-~~i~---~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (162)
T PF13462_consen 70 CVADQ-G--KYFWFFHELLFSQQENF----E--NK-KDIA---ANA------GGSNEQFNKCLNSDEIKAQLEADSQLAR 130 (162)
T ss_dssp HHHHH-T--HHHHHHHHHHHHHCHST----S--SH-HHHH---HHT------TSHHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred HHHHH-h--HHHHHHHHHHHHhhhcc----c--hh-HHHH---HHc------CCCHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 65554 4 55566666443332211 0 01 1111 010 0112345555666778888888999999
Q ss_pred HhCCCcCCceeeEeceeccCc
Q 001078 207 KLGLTKLKCCLLMNGLVSESS 227 (1162)
Q Consensus 207 Rlgl~~~~p~vlvNGv~~~~~ 227 (1162)
+.|+. ..|.++|||+.+...
T Consensus 131 ~~~i~-~tPt~~inG~~~~~~ 150 (162)
T PF13462_consen 131 QLGIT-GTPTFFINGKYVVGP 150 (162)
T ss_dssp HHT-S-SSSEEEETTCEEETT
T ss_pred HcCCc-cccEEEECCEEeCCC
Confidence 99994 469999999998643
No 32
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=90.44 E-value=8.5 Score=38.57 Aligned_cols=136 Identities=14% Similarity=0.118 Sum_probs=82.2
Q ss_pred ccEEEEEcCCCcchHHHHHHHHHHHhcccc-eEEEEEeeecccccchhccCCCCCCCCccCCCCCCCchHHHHHHHHHHH
Q 001078 50 FHAVYVLDPATVCGLEVIDMIMSLYENHFP-LRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLFLFI 128 (1162)
Q Consensus 50 ~nlV~vvDps~~~~l~~l~~i~~~~~~~iP-vR~GlVp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~s~~~ar~f~~i 128 (1162)
..++.+.||..+-..++-..+..++... | +|+=+.+++-. ...+...+++...+
T Consensus 7 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~~-~~~~~~~~~~p~~------------------------~~~~~~~~~~~~~~ 61 (154)
T cd03023 7 VTIVEFFDYNCGYCKKLAPELEKLLKED-PDVRVVFKEFPIL------------------------GESSVLAARVALAV 61 (154)
T ss_pred EEEEEEECCCChhHHHhhHHHHHHHHHC-CCceEEEEeCCcc------------------------CcchHHHHHHHHHH
Confidence 4688899999999988877777654332 2 34433333211 02234455666555
Q ss_pred HHhhChHHHHHHHHHHHHhhhccCCCCCCchhhhhhHHhHhHhhccCCCCCCChhhhhhhhcccchhhhHHHHHHHHHHh
Q 001078 129 KESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFVFKL 208 (1162)
Q Consensus 129 ~~~~g~~~Al~FL~~~~~~~~~~~~~~~~~~~~~~~v~~af~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~f~~Rl 208 (1162)
.+ .+......|...++..... .+.+.+.... +.+ .-+.+.+...+.+.++.+.++...+..+++
T Consensus 62 ~~-~~~~~~~~~~~~lf~~~~~---------~~~~~l~~~a-~~~-----gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (154)
T cd03023 62 WK-NGPGKYLEFHNALMATRGR---------LNEESLLRIA-KKA-----GLDEAKLKKDMDDPEIEATIDKNRQLARAL 125 (154)
T ss_pred HH-hChhHHHHHHHHHHhcCCC---------CCHHHHHHHH-HHc-----CCCHHHHHHHhhChHHHHHHHHHHHHHHHc
Confidence 44 4555667777777653210 1222222222 111 123345666677778888888888999999
Q ss_pred CCCcCCceeeEeceeccCc
Q 001078 209 GLTKLKCCLLMNGLVSESS 227 (1162)
Q Consensus 209 gl~~~~p~vlvNGv~~~~~ 227 (1162)
|+.+ .|.+++||..+...
T Consensus 126 gi~g-tPt~~v~g~~~~G~ 143 (154)
T cd03023 126 GITG-TPAFIIGDTVIPGA 143 (154)
T ss_pred CCCc-CCeEEECCEEecCC
Confidence 9965 69999999987643
No 33
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=85.75 E-value=30 Score=35.84 Aligned_cols=143 Identities=10% Similarity=0.092 Sum_probs=75.5
Q ss_pred CceEEEEEeeCCChhhHHHHHHHHHHHhcCCCceEEEEEecCCCCCCCchhHHHHHHHHHhhcccchhhHHHHHHHHhhh
Q 001078 314 KPVTHLLAVDVTSKKGMKLLHEGIRFLIGGSNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQLCSF 393 (1162)
Q Consensus 314 ~~~t~wvv~D~~~~~g~~l~~~al~~l~~~~~~~Rv~~v~n~~~~~~~~~~~~~~~i~aa~~~~~~~~~~~~~l~~l~~~ 393 (1162)
.++|+....|+.++-.+.+-...-+.+++....+|+.+++.+..... .....++..++.. ... ...+...+.+.
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~aa~a~~aa~~-~~~---~~~~~~~lf~~ 88 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVVFGGGE--GEPLARAFYAAEA-LGL---EDKLHAALFEA 88 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCcccccc--chHHHHHHHHHHH-cCc---HhhhhHHHHHH
Confidence 46889999999999887777655555554455778877765543211 1233444443322 111 12232333221
Q ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhcCCChHhHhhccCccchhhHHHHHHHHHHHHHHHhCCCCCCcEEEEcCEEe
Q 001078 394 YERTYLLASSATADSTQAFIDKVCEFAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNGRVT 473 (1162)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~NGR~i 473 (1162)
.... .....+ .+.+.++++..+++.+.+...+.+.. ....+..... ....+|+. |.+.+++||+.+
T Consensus 89 ~~~~--------~~~~~~-~~~l~~~a~~~Gl~~~~~~~~~~s~~---~~~~i~~~~~-~~~~~gi~-gTPt~iInG~~~ 154 (178)
T cd03019 89 IHEK--------RKRLLD-PDDIRKIFLSQGVDKKKFDAAYNSFS---VKALVAKAEK-LAKKYKIT-GVPAFVVNGKYV 154 (178)
T ss_pred HHHh--------CCCCCC-HHHHHHHHHHhCCCHHHHHHHHhCHH---HHHHHHHHHH-HHHHcCCC-CCCeEEECCEEE
Confidence 1110 000000 13345556667887777766554322 2112222222 33455776 899999999998
Q ss_pred cCC
Q 001078 474 FPI 476 (1162)
Q Consensus 474 ~~~ 476 (1162)
...
T Consensus 155 ~~~ 157 (178)
T cd03019 155 VNP 157 (178)
T ss_pred ECh
Confidence 553
No 34
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=85.57 E-value=3.1 Score=37.70 Aligned_cols=52 Identities=19% Similarity=0.411 Sum_probs=37.7
Q ss_pred EEEEeccCCCCCCCceEEEEecCCCCcccceEEEecceeeeee-eCCceeEEEe
Q 001078 698 LTGHCSEKDHEPPQGLQLILGTKSTPHLVDTLVMANLGYWQMK-VSPGVWYLQL 750 (1162)
Q Consensus 698 ieG~~~d~~~~~p~Glql~L~~~~~~~~~dT~vM~nlGYfQlk-a~pG~~~l~l 750 (1162)
|.|..+|.+..|..|..+.|.+..+.. ..+.+=..-|+|.|. .+||.|.|.+
T Consensus 2 I~G~V~d~~g~pv~~a~V~l~~~~~~~-~~~~~Td~~G~f~~~~l~~g~Y~l~v 54 (82)
T PF13620_consen 2 ISGTVTDATGQPVPGATVTLTDQDGGT-VYTTTTDSDGRFSFEGLPPGTYTLRV 54 (82)
T ss_dssp EEEEEEETTSCBHTT-EEEET--TTTE-CCEEE--TTSEEEEEEE-SEEEEEEE
T ss_pred EEEEEEcCCCCCcCCEEEEEEEeeCCC-EEEEEECCCceEEEEccCCEeEEEEE
Confidence 689999986699999999998765554 444455555999998 9999999987
No 35
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=84.32 E-value=36 Score=34.61 Aligned_cols=44 Identities=14% Similarity=0.007 Sum_probs=30.9
Q ss_pred CceEEEEEeeCCChhhHHHHHHHHHHHhcC--CCceEEEEEecCCC
Q 001078 314 KPVTHLLAVDVTSKKGMKLLHEGIRFLIGG--SNGARLGVLFSASR 357 (1162)
Q Consensus 314 ~~~t~wvv~D~~~~~g~~l~~~al~~l~~~--~~~~Rv~~v~n~~~ 357 (1162)
.++++-...|+.++..+++-....+.+++- ...+++.+.+.|..
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~ 57 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLD 57 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSS
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcccc
Confidence 358888999999999987755444444332 46889999888754
No 36
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=82.10 E-value=11 Score=34.80 Aligned_cols=47 Identities=21% Similarity=0.444 Sum_probs=37.6
Q ss_pred EEEEeccCCC-CCCCceEEEEecCCCCcccceEEEe-cceeeeeeeCCceeEEEe
Q 001078 698 LTGHCSEKDH-EPPQGLQLILGTKSTPHLVDTLVMA-NLGYWQMKVSPGVWYLQL 750 (1162)
Q Consensus 698 ieG~~~d~~~-~~p~Glql~L~~~~~~~~~dT~vM~-nlGYfQlka~pG~~~l~l 750 (1162)
|.|...|..+ .|..|+-+.+.+.. .-+++ .-|+|.|++++|-+.|.+
T Consensus 2 i~G~V~d~~t~~pl~~a~V~~~~~~------~~~~Td~~G~F~i~~~~g~~~l~i 50 (88)
T PF13715_consen 2 ISGKVVDSDTGEPLPGATVYLKNTK------KGTVTDENGRFSIKLPEGDYTLKI 50 (88)
T ss_pred EEEEEEECCCCCCccCeEEEEeCCc------ceEEECCCeEEEEEEcCCCeEEEE
Confidence 5788889885 99999999998763 22333 349999999999999987
No 37
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=78.98 E-value=85 Score=32.88 Aligned_cols=159 Identities=13% Similarity=0.009 Sum_probs=82.8
Q ss_pred cEEEEEcCCCcchHHHHHHHHHHHhcccceEEEEEeeecccccchhccCCCCCCCC--------------------ccCC
Q 001078 51 HAVYVLDPATVCGLEVIDMIMSLYENHFPLRFGVILYSSKFIKSIEINGGELHSPV--------------------AEDD 110 (1162)
Q Consensus 51 nlV~vvDps~~~~l~~l~~i~~~~~~~iPvR~GlVp~~~~~~~~~~~~~g~~~~~~--------------------~~~~ 110 (1162)
.++++.|+.++-..-....+..+.+..-.++|=..|+.=. +.....+|..+... .-..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gi~~~~ 78 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR--PDMRRSGGAPPAEDPAKAEYMFQDLERWARRYGIPFNF 78 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS--THHHHCT-SCGCGSHHHHHHHHHHHHHHHHHHT--TBT
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc--cccccCCCCCcccChhHHHHHHHHHHHHHHHhcCcccC
Confidence 4789999999999887777776654443455555454321 11121222100000 0000
Q ss_pred CCCCCchHHHHHHHHHHHHHhhChHHHHHHHHHHHHhhhccCCCCCCchhhhhhHHhHhHhhccCCCCCCChhhhhhhhc
Q 001078 111 SPVNEDISSLIIRLFLFIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEK 190 (1162)
Q Consensus 111 ~~~~~~~s~~~ar~f~~i~~~~g~~~Al~FL~~~~~~~~~~~~~~~~~~~~~~~v~~af~~~~~~~~~~~~~~~~~~l~~ 190 (1162)
.......+....++++++.+. | ....|...+++..-.. ..+.-+.+.+.+.+ +++ .-..+.++..+.
T Consensus 79 ~~~~~~~s~~a~~~~~~a~~~-~--~~~~~~~al~~a~~~~----~~~i~~~~vl~~~~-~~~-----Gld~~~~~~~~~ 145 (193)
T PF01323_consen 79 PPPFPGNSRPAHRAAYAAQEQ-G--KADAFADALFRAYFVE----GRDISDPDVLAEIA-EEA-----GLDPDEFDAALD 145 (193)
T ss_dssp SSTHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHTS----ST-TSSHHHHHHHH-HHT-----T--HHHHHHHHT
T ss_pred CchhhhhhHHHHHHHHHHHHh-h--hhhHHHHHHHHHHHhc----ccCCCCHHHHHHHH-HHc-----CCcHHHHHHHhc
Confidence 000001345556666665444 3 4444444444322110 01112233344444 221 223456777777
Q ss_pred ccchhhhHHHHHHHHHHhCCCcCCceeeEece-ecc
Q 001078 191 EKTFMDQSQESSMFVFKLGLTKLKCCLLMNGL-VSE 225 (1162)
Q Consensus 191 ~~~~d~~~~~~~~f~~Rlgl~~~~p~vlvNGv-~~~ 225 (1162)
++.+.+.+.+..+-..++|+.+ .|.++|||. .+.
T Consensus 146 ~~~~~~~~~~~~~~a~~~gv~G-vP~~vv~g~~~~~ 180 (193)
T PF01323_consen 146 SPEVKAALEEDTAEARQLGVFG-VPTFVVNGKYRFF 180 (193)
T ss_dssp SHHHHHHHHHHHHHHHHTTCSS-SSEEEETTTEEEE
T ss_pred chHHHHHHHHHHHHHHHcCCcc-cCEEEECCEEEEE
Confidence 8888888888888899999965 599999999 443
No 38
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=76.72 E-value=15 Score=34.36 Aligned_cols=55 Identities=25% Similarity=0.446 Sum_probs=46.1
Q ss_pred eEEEEEEeccCCCCCCCceEEEEecCCCCcccceEEEecceeeeeeeCCceeEEEec
Q 001078 695 ALVLTGHCSEKDHEPPQGLQLILGTKSTPHLVDTLVMANLGYWQMKVSPGVWYLQLA 751 (1162)
Q Consensus 695 ~ilieG~~~d~~~~~p~Glql~L~~~~~~~~~dT~vM~nlGYfQlka~pG~~~l~l~ 751 (1162)
-.+|.|... ...+|..|--.-|.++++....+..+-++ |=|-|=|.||.|.++..
T Consensus 7 e~VItG~V~-~~G~Pv~gAyVRLLD~sgEFtaEvvts~~-G~FRFfaapG~WtvRal 61 (85)
T PF07210_consen 7 ETVITGRVT-RDGEPVGGAYVRLLDSSGEFTAEVVTSAT-GDFRFFAAPGSWTVRAL 61 (85)
T ss_pred eEEEEEEEe-cCCcCCCCeEEEEEcCCCCeEEEEEecCC-ccEEEEeCCCceEEEEE
Confidence 567899987 44489999999999998888777766666 99999999999999864
No 39
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=72.13 E-value=24 Score=34.94 Aligned_cols=101 Identities=15% Similarity=0.130 Sum_probs=63.3
Q ss_pred EEEecCcchHHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCcccccccccccHHHHH
Q 001078 858 FSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAY 937 (1162)
Q Consensus 858 f~vasg~~Y~~~l~v~I~SIl~nt~~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r~~~~Y 937 (1162)
++.+.+. ...+.-++.|+.+.+..++.++|+.+.-+++..+.+..+.+ .+..++++..... .+...+.
T Consensus 3 vip~~n~--~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-~~~~i~~i~~~~n---------~g~~~~~ 70 (169)
T PF00535_consen 3 VIPTYNE--AEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-SDPNIRYIRNPEN---------LGFSAAR 70 (169)
T ss_dssp EEEESS---TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-CSTTEEEEEHCCC---------SHHHHHH
T ss_pred EEEeeCC--HHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc-ccccccccccccc---------ccccccc
Confidence 3344554 56677889999988777899999998888888888888876 3455555544311 1111121
Q ss_pred HHHhhcccCCCCCCeEEEEeCCeeecCC-chHHHhcCC
Q 001078 938 KILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYDMDI 974 (1162)
Q Consensus 938 ~RLfL~~lfP~~vdrVLYLDaD~IV~~D-L~eL~~~Dl 974 (1162)
...+... .-+-++++|+|.++..+ +.+|++.-.
T Consensus 71 -n~~~~~a---~~~~i~~ld~D~~~~~~~l~~l~~~~~ 104 (169)
T PF00535_consen 71 -NRGIKHA---KGEYILFLDDDDIISPDWLEELVEALE 104 (169)
T ss_dssp -HHHHHH-----SSEEEEEETTEEE-TTHHHHHHHHHH
T ss_pred -ccccccc---ceeEEEEeCCCceEcHHHHHHHHHHHH
Confidence 1222222 23499999999999877 777775533
No 40
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=71.50 E-value=15 Score=37.51 Aligned_cols=58 Identities=21% Similarity=0.432 Sum_probs=43.4
Q ss_pred eEEEEEEeccCCCCCCCceEEEEecCC--CCcccceEE---EecceeeeeeeCCceeEEEecC
Q 001078 695 ALVLTGHCSEKDHEPPQGLQLILGTKS--TPHLVDTLV---MANLGYWQMKVSPGVWYLQLAP 752 (1162)
Q Consensus 695 ~ilieG~~~d~~~~~p~Glql~L~~~~--~~~~~dT~v---M~nlGYfQlka~pG~~~l~l~~ 752 (1162)
+++|.|--.|-...|..|-+++|.... ..++..|.. =.+-|||-|.+.||.|.+++..
T Consensus 2 sV~ISGvL~dg~G~pv~g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~~~epG~Y~V~l~~ 64 (134)
T PF08400_consen 2 SVKISGVLKDGAGKPVPGCTITLKARRTSSTVVVGTVASVVTGEAGEYSFDVEPGVYRVTLKV 64 (134)
T ss_pred eEEEEEEEeCCCCCcCCCCEEEEEEccCchheEEEEEEEEEcCCCceEEEEecCCeEEEEEEE
Confidence 467888888877799999999997432 223333332 2567999999999999998864
No 41
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=68.20 E-value=32 Score=44.26 Aligned_cols=96 Identities=15% Similarity=0.308 Sum_probs=68.7
Q ss_pred eEEeccCCCCeEEeeecccccCCcccccccCCCcceEEEEEeeeEEEEEEeccCCCCCCCceEEEEecCCCCcccceEEE
Q 001078 652 LTMNLDVPEPWLVEPVIAVHDLDNILLEKLGDTRTLQAVFELEALVLTGHCSEKDHEPPQGLQLILGTKSTPHLVDTLVM 731 (1162)
Q Consensus 652 ~t~~~d~P~~w~v~~~~~~~DldNi~l~~~~~~~~~~a~y~L~~ilieG~~~d~~~~~p~Glql~L~~~~~~~~~dT~vM 731 (1162)
|+|.+..|..|--+|..-..-.|-. -+-. ..+=+.+|-++..-|.|..--....+|+|++.+|+++.+ .+..|.+=
T Consensus 78 yiLkIspP~GwsfePd~Vel~vDGk-td~C--s~n~DinFhftGFsv~GkVlgaaggGpagV~velrs~e~-~iast~T~ 153 (1165)
T KOG1948|consen 78 YILKISPPAGWSFEPDSVELKVDGK-TDAC--SLNEDINFHFTGFSVRGKVLGAAGGGPAGVLVELRSQED-PIASTKTE 153 (1165)
T ss_pred EEEEecCCCCccccCceEEEEeccc-cccc--cCCCceEEEEeeeeEeeEEeeccCCCcccceeecccccC-cceeeEec
Confidence 9999999999999986655444420 0000 112244788888989998765555799999999998744 46777777
Q ss_pred ecceeeeee-eCCceeEEEecC
Q 001078 732 ANLGYWQMK-VSPGVWYLQLAP 752 (1162)
Q Consensus 732 ~nlGYfQlk-a~pG~~~l~l~~ 752 (1162)
++ |=|-|+ +.||-|.++--.
T Consensus 154 ~~-Gky~f~~iiPG~Yev~ash 174 (1165)
T KOG1948|consen 154 DG-GKYEFRNIIPGKYEVSASH 174 (1165)
T ss_pred CC-CeEEEEecCCCceEEeccC
Confidence 77 777777 999999987433
No 42
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=67.87 E-value=51 Score=31.55 Aligned_cols=88 Identities=18% Similarity=0.170 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCcccccccccccHHHHHHHHhhcccC
Q 001078 867 ERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIF 946 (1162)
Q Consensus 867 ~~~l~v~I~SIl~nt~~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r~~~~Y~RLfL~~lf 946 (1162)
.+.+..++.|+......+..++|+++.-+++..+.+..+... ...+..+... . ......+. ...+...
T Consensus 9 ~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~-------~~g~~~~~-~~~~~~~- 76 (156)
T cd00761 9 EPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK-DPRVIRVINE--E-------NQGLAAAR-NAGLKAA- 76 (156)
T ss_pred HHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc-CCCeEEEEec--C-------CCChHHHH-HHHHHHh-
Confidence 577889999999887667899999988888887777776643 1112111111 0 00100010 0111111
Q ss_pred CCCCCeEEEEeCCeeecCCchH
Q 001078 947 PLSLEKVIFVDADQVVRADMGE 968 (1162)
Q Consensus 947 P~~vdrVLYLDaD~IV~~DL~e 968 (1162)
..+.++++|+|.++..+.-+
T Consensus 77 --~~d~v~~~d~D~~~~~~~~~ 96 (156)
T cd00761 77 --RGEYILFLDADDLLLPDWLE 96 (156)
T ss_pred --cCCEEEEECCCCccCccHHH
Confidence 47899999999988766433
No 43
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=63.21 E-value=65 Score=31.72 Aligned_cols=89 Identities=16% Similarity=0.186 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCccccccccccc-HHHHHHHHhhccc
Q 001078 867 ERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR-IIWAYKILFLDVI 945 (1162)
Q Consensus 867 ~~~l~v~I~SIl~nt~~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r-~~~~Y~RLfL~~l 945 (1162)
...+..++.|++..+..++.++|+.+.-++...+.+......+...+.++.-. . .....+ +.++.. ..
T Consensus 9 ~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~--~----~~g~~~~~n~~~~-----~~ 77 (180)
T cd06423 9 EAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDK--E----NGGKAGALNAGLR-----HA 77 (180)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEec--c----cCCchHHHHHHHH-----hc
Confidence 47888999999987766789999998877777776666554432222222111 1 111111 112221 11
Q ss_pred CCCCCCeEEEEeCCeeecCC-chHH
Q 001078 946 FPLSLEKVIFVDADQVVRAD-MGEL 969 (1162)
Q Consensus 946 fP~~vdrVLYLDaD~IV~~D-L~eL 969 (1162)
.-+-|+++|+|.++..+ +.++
T Consensus 78 ---~~~~i~~~D~D~~~~~~~l~~~ 99 (180)
T cd06423 78 ---KGDIVVVLDADTILEPDALKRL 99 (180)
T ss_pred ---CCCEEEEECCCCCcChHHHHHH
Confidence 46889999999988765 5556
No 44
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=62.87 E-value=8.8 Score=42.90 Aligned_cols=152 Identities=17% Similarity=0.193 Sum_probs=25.2
Q ss_pred HHHHHhcCcEEEEEEecCCcccccccccccHHHHHHHHhhccc---CCCCCCeEEEEeCCeeecCCchHHHhcCC-----
Q 001078 903 PHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVI---FPLSLEKVIFVDADQVVRADMGELYDMDI----- 974 (1162)
Q Consensus 903 ~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r~~~~Y~RLfL~~l---fP~~vdrVLYLDaD~IV~~DL~eL~~~Dl----- 974 (1162)
...|++.|..+.++... ..... ..+..|+ +...+-.+ +| +.+-|.|||+|.+|..-=.+|.+.=|
T Consensus 34 ~~Ya~~HgY~~~~~~~~--~~~~~---~~~~~W~-K~~~lr~~m~~~P-~~~wv~~lD~Dali~n~~~~L~~~il~p~~L 106 (239)
T PF05637_consen 34 VDYARRHGYDLYYRNIQ--EYDDP---ERPGSWA-KIPALRAAMKKYP-EAEWVWWLDSDALIMNPDFSLEEHILSPSRL 106 (239)
T ss_dssp HHHHHHHT-EEEEE-S----S--S---HHHHHHT-HHHHHHHHHHH-T-T-SEEEEE-TTEEE-----------------
T ss_pred HHHHHhcCCEEEEEChH--HcCCC---CCChhhH-HHHHHHHHHHhCC-CCCEEEEEcCCeEEEeccccccccccccccc
Confidence 34556667777665442 21111 1111233 33333333 38 58999999999998753333322111
Q ss_pred -----CCCeEEEeeccCCCCCCCCcccccchhhhhhc---CCCCeeeeeeeeEehHHHHHhcHHHHHHHHHHHh---ccC
Q 001078 975 -----KGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHL---RGRPYHISALYVVDLKRFRETAAGDNLRVFYETL---SKD 1043 (1162)
Q Consensus 975 -----~g~~~Aav~d~~~~~~~~g~~~w~~gyw~~~L---~~~~YfNSGV~liNL~~~R~~~~~dkl~~~~~~l---s~~ 1043 (1162)
.+.++ +|.-...+ ..+ ...+ +...+ ++....|+|++++=...|= ..+++.+... ..+
T Consensus 107 ~~~~~r~~~~--~p~~~~~~-~~~---~~~~-~~~~li~t~d~~gLNtGsFliRns~ws-----~~fLd~w~~~~~~~~~ 174 (239)
T PF05637_consen 107 DSLLLRDVPI--VPPDSIIK-TYS---VIDG-NDIHLIITQDWNGLNTGSFLIRNSPWS-----RDFLDAWADPLYRNYD 174 (239)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccc--cccccccc-ccc---cccc-ccccccccccccccccccccccccccc-----cccccccccccccccc
Confidence 22222 11110000 000 0000 11111 3568899999999555554 3344432211 011
Q ss_pred CCCCCCCCCChhhhccccCc-----eeecCCcccc
Q 001078 1044 PNSLANLDQDLPNYAQHTVP-----IFSLPQEWLW 1073 (1162)
Q Consensus 1044 ~~sl~~~DQDllN~~~~~~~-----I~~Lp~~wN~ 1073 (1162)
.......||+++-.++...+ +..+|++|--
T Consensus 175 ~~~~~~~EQsAl~~ll~~~~~~~~~~~~vpq~~~n 209 (239)
T PF05637_consen 175 WDQLEFDEQSALEHLLQWHPEILSKVALVPQRWFN 209 (239)
T ss_dssp -----------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 11123579999976665323 4457776643
No 45
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=60.44 E-value=1.8e+02 Score=28.81 Aligned_cols=136 Identities=19% Similarity=0.167 Sum_probs=71.1
Q ss_pred CceEEEEEeeCCChhhHHHHHHHHHHHhcCCCceEEEEEecCCCCCCCchhHHHHHHHHHhhcccchhhHHHHHHHHhhh
Q 001078 314 KPVTHLLAVDVTSKKGMKLLHEGIRFLIGGSNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQLCSF 393 (1162)
Q Consensus 314 ~~~t~wvv~D~~~~~g~~l~~~al~~l~~~~~~~Rv~~v~n~~~~~~~~~~~~~~~i~aa~~~~~~~~~~~~~l~~l~~~ 393 (1162)
.++++.++.|+.++-.++.-....+.+.+ ..++|+-+.+-|-.... .....++..++.. ........+...+...
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~-~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~lf~~ 79 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKE-DPDVRVVFKEFPILGES--SVLAARVALAVWK--NGPGKYLEFHNALMAT 79 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEeCCccCcc--hHHHHHHHHHHHH--hChhHHHHHHHHHHhc
Confidence 45888889999999888876544443433 34688888777643211 1122333322221 1112233343333221
Q ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhcCCChHhHhhccCccchhhHHHHHHHHHHHHHHHhCCCCCCcEEEEcCEEe
Q 001078 394 YERTYLLASSATADSTQAFIDKVCEFAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNGRVT 473 (1162)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~NGR~i 473 (1162)
.. ... .+.+.++++..+++.+.+...+.+- .....+...... .+.+|+. |.+.+++||+.+
T Consensus 80 ~~----------~~~----~~~l~~~a~~~gl~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~gi~-gtPt~~v~g~~~ 140 (154)
T cd03023 80 RG----------RLN----EESLLRIAKKAGLDEAKLKKDMDDP---EIEATIDKNRQL-ARALGIT-GTPAFIIGDTVI 140 (154)
T ss_pred CC----------CCC----HHHHHHHHHHcCCCHHHHHHHhhCh---HHHHHHHHHHHH-HHHcCCC-cCCeEEECCEEe
Confidence 00 000 1223445566678777776655432 222222223333 3455776 899999999977
No 46
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=60.32 E-value=1.4e+02 Score=31.69 Aligned_cols=148 Identities=15% Similarity=0.098 Sum_probs=65.1
Q ss_pred EEEcCCCcchHHHHHHHHHH---HhcccceEEEEEeeec--ccccchhccCCCCCCCCccCCCCCCCchHHHHHHHHHHH
Q 001078 54 YVLDPATVCGLEVIDMIMSL---YENHFPLRFGVILYSS--KFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLFLFI 128 (1162)
Q Consensus 54 ~vvDps~~~~l~~l~~i~~~---~~~~iPvR~GlVp~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~s~~~ar~f~~i 128 (1162)
+++||-....+.+=..+..+ +.+.+-+|+ ||... ++..-..... . ....+ ......+.-.+-..+..
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~--i~~~~~~~~~~~~~~~~-~-~~~~~----~~~~~~~~y~a~la~kA 73 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRF--IPGGLMPDINDFMPRMP-I-NGDFW----RNEPRSSSYPACLAYKA 73 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEE--EE--SS-S--SB--H------TTHH----HS--BS--HHHHHHHHH
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEE--EEccchHHHHHHHHhcC-C-CHHHh----cCCCCCCchHHHHHHHH
Confidence 57899999998855555544 445555555 44433 2111111100 0 00000 01112233334444555
Q ss_pred HHhhChHHHHHHHHHHHHhhhccCCCCCCchhhh-hhHHhHhHhhccCCCCCCChhhhhhhhcccchhhhHHHHHHHHHH
Q 001078 129 KESHGTQTAFQFLSNVNRLRMESADSADDDALEI-HHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFVFK 207 (1162)
Q Consensus 129 ~~~~g~~~Al~FL~~~~~~~~~~~~~~~~~~~~~-~~v~~af~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~f~~R 207 (1162)
.+-.|.+.|..||.++.+..-... ...+. +.+.+.. +.+ +-..+.|..-..|+...+....=++..+.
T Consensus 74 A~~qg~k~~~~fL~~lQ~a~~~~~-----~~~s~~~~l~~iA-~~~-----gLD~~~F~~d~~S~~~~~~~~~D~~la~~ 142 (176)
T PF13743_consen 74 AQLQGKKKARRFLRALQEALFLEG-----KNYSDEELLLEIA-EEL-----GLDVEMFKEDLHSDEAKQAFQEDQQLARE 142 (176)
T ss_dssp HHTTT-H--HHHHHHHHHHHHTS--------TTSHHHHHHHH-HHT-----T--HHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHhChhhHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHH-HHh-----CCCHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 567799999999999876542211 11222 2222222 222 12233454445555555566666888899
Q ss_pred hCCCcCCceeeEe
Q 001078 208 LGLTKLKCCLLMN 220 (1162)
Q Consensus 208 lgl~~~~p~vlvN 220 (1162)
+|+.+.+..|++|
T Consensus 143 m~I~~~Ptlvi~~ 155 (176)
T PF13743_consen 143 MGITGFPTLVIFN 155 (176)
T ss_dssp TT-SSSSEEEEE-
T ss_pred cCCCCCCEEEEEe
Confidence 9996654455567
No 47
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=58.75 E-value=96 Score=35.46 Aligned_cols=133 Identities=13% Similarity=0.132 Sum_probs=67.3
Q ss_pred cCCeeEEEEEecCc-chHHHHHHHHHHHHHcCCCCeEEEEEeCCCC--hhHHHHHHHHHHhcC------c---EEEEEEe
Q 001078 851 HGKTINIFSIASGH-LYERFLKIMILSVLKNTCRPVKFWFIKNYLS--PQFKDVIPHMAQEYG------F---EYELITY 918 (1162)
Q Consensus 851 ~~~~InIf~vasg~-~Y~~~l~v~I~SIl~nt~~~v~f~Il~~~lS--~~~k~~L~~l~~~~~------~---~i~fv~~ 918 (1162)
..+.|=|++..-+. .|....--.|.|+ ....+.|.+.+|.++.+ ....+.|....++.. . .+.++.-
T Consensus 23 ~~e~VLILtplrna~~~l~~y~~~L~~L-~YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~ 101 (269)
T PF03452_consen 23 NKESVLILTPLRNAASFLPDYFDNLLSL-TYPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFRSITILRK 101 (269)
T ss_pred cCCeEEEEEecCCchHHHHHHHHHHHhC-CCCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcceEEEEcC
Confidence 34668888876554 3444434444444 23345799999998887 555555554332221 1 3333333
Q ss_pred cCCccc----------ccccccccHHHHHHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHhcCCCCCeEEEeeccC
Q 001078 919 KWPTWL----------HKQKEKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCD 986 (1162)
Q Consensus 919 ~wp~~L----------~~~~~~~r~~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~Dl~g~~~Aav~d~~ 986 (1162)
++.... ..|..+.+.++-+.=..|-.-|....+-|++||+|++ .....=+-++=-.++.+ .||.|.
T Consensus 102 df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv-~~P~~lI~dli~~~kdI-ivPn~~ 177 (269)
T PF03452_consen 102 DFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIV-ETPPTLIQDLIAHDKDI-IVPNCW 177 (269)
T ss_pred CCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcc-cCChHHHHHHHhCCCCE-Ecccee
Confidence 332211 1122221112333333344444447999999999986 32222222222234444 468885
No 48
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=53.52 E-value=2.4e+02 Score=29.51 Aligned_cols=156 Identities=13% Similarity=0.072 Sum_probs=78.9
Q ss_pred cEEEEEcCCCcchHHHHHHHHHHHhc---ccceEEEEEeeecccccc--hh------------c-cCCCC-CCCCccCCC
Q 001078 51 HAVYVLDPATVCGLEVIDMIMSLYEN---HFPLRFGVILYSSKFIKS--IE------------I-NGGEL-HSPVAEDDS 111 (1162)
Q Consensus 51 nlV~vvDps~~~~l~~l~~i~~~~~~---~iPvR~GlVp~~~~~~~~--~~------------~-~~g~~-~~~~~~~~~ 111 (1162)
.+.++.||.++-....-..+..+.++ ++.+++=+.++...+.+. .. . ..|.. ..+.+..
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-- 79 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLGGLLPGNNARQITKQWRIYVHWHKARIALTGQPFGEDYLEL-- 79 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEeccccCCCCCCCcchHHHHHHhHHHHHHHhcCCccCchhHhc--
Confidence 57899999999998766667666554 788887544443331100 00 0 11100 0000000
Q ss_pred CCCCchHHHHHHHHHHHHHhhChHHHHHHHHHHHHhhhccCCCCCCchhhhhhHHhHhHhhccCCCCCCChhhhhhhhcc
Q 001078 112 PVNEDISSLIIRLFLFIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKE 191 (1162)
Q Consensus 112 ~~~~~~s~~~ar~f~~i~~~~g~~~Al~FL~~~~~~~~~~~~~~~~~~~~~~~v~~af~~~~~~~~~~~~~~~~~~l~~~ 191 (1162)
...+-.+....+++..+. ..|......|+..+....-.. ..+....+.+.+.. ..+ .-....+.....+
T Consensus 80 ~~~~~~s~~a~~~~~aa~-~~~~~~~~~~~~~l~~a~~~~----~~~i~~~~~l~~ia-~~~-----Gld~~~~~~~~~s 148 (193)
T cd03025 80 LLFDLDSAPASRAIKAAR-LQGPERLLEMLKAIQRAHYVE----GRDLADTEVLRELA-IEL-----GLDVEEFLEDFQS 148 (193)
T ss_pred ccCCCCchHHHHHHHHHH-HhCcchHHHHHHHHHHHHHHc----CCCCCCHHHHHHHH-HHc-----CCCHHHHHHHHcC
Confidence 000011344455555553 334445667777665432110 01111222333332 211 1223355666677
Q ss_pred cchhhhHHHHHHHHHHhCCCcCCceeeEe
Q 001078 192 KTFMDQSQESSMFVFKLGLTKLKCCLLMN 220 (1162)
Q Consensus 192 ~~~d~~~~~~~~f~~Rlgl~~~~p~vlvN 220 (1162)
.++.+.+.+..+...++|+.+ .|.++|+
T Consensus 149 ~~~~~~l~~~~~~a~~~gv~g-~Ptfvv~ 176 (193)
T cd03025 149 DEAKQAIQEDQKLARELGING-FPTLVLE 176 (193)
T ss_pred hHHHHHHHHHHHHHHHcCCCc-cCEEEEE
Confidence 778888888888889999966 5777774
No 49
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=53.49 E-value=1.3e+02 Score=31.50 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCcccccccccccHHHHHHHHhhcccC
Q 001078 867 ERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIF 946 (1162)
Q Consensus 867 ~~~l~v~I~SIl~nt~~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r~~~~Y~RLfL~~lf 946 (1162)
...+..+|.||+..+..++.++|+.++=+++..+.++.++.+++..+.++.-. . ......+...- + ..
T Consensus 10 ~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~--~-------~~G~~~~~n~g-~--~~ 77 (214)
T cd04196 10 EKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNG--K-------NLGVARNFESL-L--QA 77 (214)
T ss_pred HHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCC--C-------CccHHHHHHHH-H--Hh
Confidence 46788999999987766789999998777777777888877665333332221 0 11111111111 1 11
Q ss_pred CCCCCeEEEEeCCeeecCC-chHHHhc
Q 001078 947 PLSLEKVIFVDADQVVRAD-MGELYDM 972 (1162)
Q Consensus 947 P~~vdrVLYLDaD~IV~~D-L~eL~~~ 972 (1162)
..-+-|++||+|.+...+ +..+++.
T Consensus 78 -~~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 78 -ADGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred -CCCCEEEEECCCcccChhHHHHHHHH
Confidence 257899999999776654 8888876
No 50
>PF04765 DUF616: Protein of unknown function (DUF616); InterPro: IPR006852 The entry represents a protein of unknown function. The function of is unknown although a number of the members are thought to be glycosyltransferases.
Probab=51.67 E-value=26 Score=40.64 Aligned_cols=122 Identities=14% Similarity=0.118 Sum_probs=73.2
Q ss_pred cCCeeEEEEEecCc-chH-HHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHHh-c-CcEEEEEEecCCccccc
Q 001078 851 HGKTINIFSIASGH-LYE-RFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQE-Y-GFEYELITYKWPTWLHK 926 (1162)
Q Consensus 851 ~~~~InIf~vasg~-~Y~-~~l~v~I~SIl~nt~~~v~f~Il~~~lS~~~k~~L~~l~~~-~-~~~i~fv~~~wp~~L~~ 926 (1162)
+|. |-|.+++.|. ... ++.. |-..+...++|+.+.+..+.+.++.=..+... . -...+++.++-.. +.
T Consensus 62 ~c~-vvV~saIFG~yD~l~qP~~-----i~~~s~~~vcf~mF~D~~t~~~l~~~~~~~~~~~~ig~WrIv~v~~lp-~~- 133 (305)
T PF04765_consen 62 KCR-VVVYSAIFGNYDKLRQPKN-----ISEYSKKNVCFFMFVDEETLKSLESEGHIPDENKKIGIWRIVVVKNLP-YD- 133 (305)
T ss_pred cCC-EEEEEEecCCCccccCchh-----hCHHHhcCccEEEEEehhhHHHHHhcCCccccccccCceEEEEecCCC-Cc-
Confidence 566 7777777775 211 1222 22233457999999998886654332111111 0 1123344443100 11
Q ss_pred ccccccHHHHHHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHhcCC--CCCeEEEeec
Q 001078 927 QKEKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDI--KGRPLAYTPF 984 (1162)
Q Consensus 927 ~~~~~r~~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~Dl--~g~~~Aav~d 984 (1162)
..|...-+.+++.-.+|| +.+--||+|+-+.+.+|+..|.+--+ ++..+|+..+
T Consensus 134 ---d~rr~~r~~K~lpHrlfp-~y~ySIWID~ki~L~~Dp~~lie~~l~~~~~~~Ai~~H 189 (305)
T PF04765_consen 134 ---DPRRNGRIPKLLPHRLFP-NYDYSIWIDGKIQLIVDPLLLIERFLWRKNADIAISKH 189 (305)
T ss_pred ---chhhcCcccceeccccCC-CCceEEEEeeeEEEecCHHHHHHHHHhcCCCcEEEeCC
Confidence 122223466788888999 69999999999999999999886554 5667888654
No 51
>PRK11204 N-glycosyltransferase; Provisional
Probab=47.42 E-value=1.4e+02 Score=35.69 Aligned_cols=102 Identities=12% Similarity=0.132 Sum_probs=65.1
Q ss_pred CeeEEEEEecCcchHHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCccccccccccc
Q 001078 853 KTINIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR 932 (1162)
Q Consensus 853 ~~InIf~vasg~~Y~~~l~v~I~SIl~nt~~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r 932 (1162)
..+-|...+.++ +..+..++.|+++.+-.++.+.|++|.-+++..+.++.+++++. .++++... . + ..+..
T Consensus 54 p~vsViIp~yne--~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~-~v~~i~~~--~---n-~Gka~ 124 (420)
T PRK11204 54 PGVSILVPCYNE--GENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIP-RLRVIHLA--E---N-QGKAN 124 (420)
T ss_pred CCEEEEEecCCC--HHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCC-cEEEEEcC--C---C-CCHHH
Confidence 346676665554 56788899999875544689999998888888888888876653 34444322 1 0 11111
Q ss_pred -HHHHHHHHhhcccCCCCCCeEEEEeCCeeecCC-chHHHh
Q 001078 933 -IIWAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYD 971 (1162)
Q Consensus 933 -~~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~D-L~eL~~ 971 (1162)
...+... ...|-++++|+|.++..| +.++.+
T Consensus 125 aln~g~~~--------a~~d~i~~lDaD~~~~~d~L~~l~~ 157 (420)
T PRK11204 125 ALNTGAAA--------ARSEYLVCIDGDALLDPDAAAYMVE 157 (420)
T ss_pred HHHHHHHH--------cCCCEEEEECCCCCCChhHHHHHHH
Confidence 1122211 247899999999988765 555654
No 52
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=46.31 E-value=2.1e+02 Score=29.34 Aligned_cols=146 Identities=14% Similarity=0.016 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHcC---CCCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCcccccccccccHHHHHHHHhhcc
Q 001078 868 RFLKIMILSVLKNT---CRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDV 944 (1162)
Q Consensus 868 ~~l~v~I~SIl~nt---~~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r~~~~Y~RLfL~~ 944 (1162)
..+..++.|+.... ..++.+.|+.++-+++..+.+..+..++. .+.++... . +. +...+... -+..
T Consensus 10 ~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-~i~~i~~~-~----n~----G~~~a~n~-g~~~ 78 (181)
T cd04187 10 ENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDP-RVKVIRLS-R----NF----GQQAALLA-GLDH 78 (181)
T ss_pred hhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCC-CEEEEEec-C----CC----CcHHHHHH-HHHh
Confidence 44455555655433 34678888888888777777777765543 44444432 1 11 11112111 1112
Q ss_pred cCCCCCCeEEEEeCCeeecC-CchHHHhcCCCCCeEEEeeccCCCCCCCCcccccchhhh--hh-c-CCCCeeeeeeeeE
Q 001078 945 IFPLSLEKVIFVDADQVVRA-DMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWK--DH-L-RGRPYHISALYVV 1019 (1162)
Q Consensus 945 lfP~~vdrVLYLDaD~IV~~-DL~eL~~~Dl~g~~~Aav~d~~~~~~~~g~~~w~~gyw~--~~-L-~~~~YfNSGV~li 1019 (1162)
. .-+-|+++|+|..... .+..++.. +....-++...+.........++....+.. .. . .......++.+++
T Consensus 79 a---~~d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (181)
T cd04187 79 A---RGDAVITMDADLQDPPELIPEMLAK-WEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKLSGVDIPDNGGDFRLM 154 (181)
T ss_pred c---CCCEEEEEeCCCCCCHHHHHHHHHH-HhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEE
Confidence 1 2478999999988754 47778776 432221222222211100000111111110 11 1 2335677888889
Q ss_pred ehHHHHHhc
Q 001078 1020 DLKRFRETA 1028 (1162)
Q Consensus 1020 NL~~~R~~~ 1028 (1162)
.-+.+++..
T Consensus 155 ~r~~~~~i~ 163 (181)
T cd04187 155 DRKVVDALL 163 (181)
T ss_pred cHHHHHHHH
Confidence 888887654
No 53
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=45.18 E-value=2.2e+02 Score=30.97 Aligned_cols=100 Identities=14% Similarity=0.204 Sum_probs=59.9
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHcCCCC--eEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCccccccccccc
Q 001078 855 INIFSIASGHLYERFLKIMILSVLKNTCRP--VKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR 932 (1162)
Q Consensus 855 InIf~vasg~~Y~~~l~v~I~SIl~nt~~~--v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r 932 (1162)
+=|...+.+ -+..+..++.|++..+..+ +.+.|+.+.-++...+.+..+.+. .+.++... . +......
T Consensus 31 isVvip~~n--~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~v~~i~~~--~---~~g~~~a 100 (251)
T cd06439 31 VTIIIPAYN--EEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK---GVKLLRFP--E---RRGKAAA 100 (251)
T ss_pred EEEEEecCC--cHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC---cEEEEEcC--C---CCChHHH
Confidence 555544444 4677889999999765433 788888888777777777776654 34333322 1 1110000
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEeCCeeecCC-chHHHhc
Q 001078 933 IIWAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYDM 972 (1162)
Q Consensus 933 ~~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~D-L~eL~~~ 972 (1162)
...++. .. .-|-|+++|+|.++..+ +.+|++.
T Consensus 101 ~n~gi~-----~a---~~d~i~~lD~D~~~~~~~l~~l~~~ 133 (251)
T cd06439 101 LNRALA-----LA---TGEIVVFTDANALLDPDALRLLVRH 133 (251)
T ss_pred HHHHHH-----Hc---CCCEEEEEccccCcCHHHHHHHHHH
Confidence 112221 11 23889999999988654 6777755
No 54
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=44.52 E-value=3.2e+02 Score=29.54 Aligned_cols=45 Identities=9% Similarity=-0.059 Sum_probs=36.2
Q ss_pred ChhhhhhhhcccchhhhHHHHHHHHHHhCCCcCCceeeEeceeccC
Q 001078 181 PQDMLLKLEKEKTFMDQSQESSMFVFKLGLTKLKCCLLMNGLVSES 226 (1162)
Q Consensus 181 ~~~~~~~l~~~~~~d~~~~~~~~f~~Rlgl~~~~p~vlvNGv~~~~ 226 (1162)
..+.++..+.+.++.+.+....+-.+++|+.+ .|.++|||+++-.
T Consensus 136 d~~~f~~~l~s~~~~~~v~~~~~~a~~~gI~g-tPtfiInGky~v~ 180 (207)
T PRK10954 136 KGEDYDAAWNSFVVKSLVAQQEKAAADLQLRG-VPAMFVNGKYMVN 180 (207)
T ss_pred CHHHHHHHHhChHHHHHHHHHHHHHHHcCCCC-CCEEEECCEEEEc
Confidence 34467777888888888888888899999955 6999999998654
No 55
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=44.52 E-value=1.8e+02 Score=28.72 Aligned_cols=89 Identities=18% Similarity=0.154 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCcccccccccccHHHHHHHHhhcccC
Q 001078 867 ERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIF 946 (1162)
Q Consensus 867 ~~~l~v~I~SIl~nt~~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r~~~~Y~RLfL~~lf 946 (1162)
...+.-++.|+...+..+..+.|+.++-.++..+.+..... .+..+... . ..+...+. ..-+...
T Consensus 9 ~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~----~~~~~~~~--~-------~~g~~~a~-n~~~~~~- 73 (166)
T cd04186 9 LEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP----EVRLIRNG--E-------NLGFGAGN-NQGIREA- 73 (166)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC----CeEEEecC--C-------CcChHHHh-hHHHhhC-
Confidence 56788899999987666788999888777776666655432 33333221 1 01111111 1111111
Q ss_pred CCCCCeEEEEeCCeeecCC-chHHHhc
Q 001078 947 PLSLEKVIFVDADQVVRAD-MGELYDM 972 (1162)
Q Consensus 947 P~~vdrVLYLDaD~IV~~D-L~eL~~~ 972 (1162)
+.+-++++|+|.++..+ +..+++.
T Consensus 74 --~~~~i~~~D~D~~~~~~~l~~~~~~ 98 (166)
T cd04186 74 --KGDYVLLLNPDTVVEPGALLELLDA 98 (166)
T ss_pred --CCCEEEEECCCcEECccHHHHHHHH
Confidence 47899999999988655 5555553
No 56
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=41.29 E-value=1.5e+02 Score=31.03 Aligned_cols=94 Identities=13% Similarity=0.117 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCcccccccccccHHHHHHHHhhcccC
Q 001078 867 ERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIF 946 (1162)
Q Consensus 867 ~~~l~v~I~SIl~nt~~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r~~~~Y~RLfL~~lf 946 (1162)
+..+.-++.||...+..+..+.|+.++-++...+.+..+...++ +.++... . +......+..+.. ++ +
T Consensus 9 ~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~--i~~~~~~--~---n~g~~~~~n~~~~--~a--~- 76 (202)
T cd04185 9 LDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDN--IVYLRLP--E---NLGGAGGFYEGVR--RA--Y- 76 (202)
T ss_pred HHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCCc--eEEEECc--c---ccchhhHHHHHHH--HH--h-
Confidence 46788999999977655678888888777777777766655444 3333221 1 1000011112221 11 1
Q ss_pred CCCCCeEEEEeCCeeecCC-chHHHhc
Q 001078 947 PLSLEKVIFVDADQVVRAD-MGELYDM 972 (1162)
Q Consensus 947 P~~vdrVLYLDaD~IV~~D-L~eL~~~ 972 (1162)
....|-++++|+|.++..+ +.+|.+.
T Consensus 77 ~~~~d~v~~ld~D~~~~~~~l~~l~~~ 103 (202)
T cd04185 77 ELGYDWIWLMDDDAIPDPDALEKLLAY 103 (202)
T ss_pred ccCCCEEEEeCCCCCcChHHHHHHHHH
Confidence 2358899999999988754 3444443
No 57
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=41.29 E-value=97 Score=33.63 Aligned_cols=54 Identities=15% Similarity=0.248 Sum_probs=35.4
Q ss_pred HHHHHHhcCCChHhHhhccCccchhhHHHHHHHHHHHHHHHhCCCCCCcEEEEcCEEec
Q 001078 416 VCEFAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNGRVTF 474 (1162)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~NGR~i~ 474 (1162)
+.+.++..|++.+.+...+.+-...... .. .....+.+|+. |.+++++|||++-
T Consensus 126 L~~~a~~~Gld~~~f~~~l~s~~~~~~v---~~-~~~~a~~~gI~-gtPtfiInGky~v 179 (207)
T PRK10954 126 IRDVFIKAGVKGEDYDAAWNSFVVKSLV---AQ-QEKAAADLQLR-GVPAMFVNGKYMV 179 (207)
T ss_pred HHHHHHHcCCCHHHHHHHHhChHHHHHH---HH-HHHHHHHcCCC-CCCEEEECCEEEE
Confidence 4455667889998888877653322222 12 22244667885 8999999999974
No 58
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=38.75 E-value=1.6e+02 Score=30.79 Aligned_cols=98 Identities=13% Similarity=0.071 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhhChHHHHHHHHHHHHhhhccCCCCCCchhhhhhHHhHhHhhccCCCCCCChhhhhhhhcccchhhh
Q 001078 118 SSLIIRLFLFIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQ 197 (1162)
Q Consensus 118 s~~~ar~f~~i~~~~g~~~Al~FL~~~~~~~~~~~~~~~~~~~~~~~v~~af~~~~~~~~~~~~~~~~~~l~~~~~~d~~ 197 (1162)
+...++++.+..+ .| .....|+..++...-.. ..+..+.+.+.+.. +.+ .-..+.+...+.++++.+.
T Consensus 85 s~~a~~~~~~a~~-~~-~~~~~~~~~lf~a~~~~----~~~i~~~~~l~~~a-~~~-----Gld~~~~~~~~~~~~~~~~ 152 (192)
T cd03022 85 TLRAMRAALAAQA-EG-DAAEAFARAVFRALWGE----GLDIADPAVLAAVA-AAA-----GLDADELLAAADDPAVKAA 152 (192)
T ss_pred hHHHHHHHHHHHh-Cc-hhHHHHHHHHHHHHhCC----CCCCCCHHHHHHHH-HHc-----CCCHHHHHHHcCCHHHHHH
Confidence 4456677777654 44 24455666655432110 01111222233332 111 1223456667777788888
Q ss_pred HHHHHHHHHHhCCCcCCceeeEeceeccCch
Q 001078 198 SQESSMFVFKLGLTKLKCCLLMNGLVSESSE 228 (1162)
Q Consensus 198 ~~~~~~f~~Rlgl~~~~p~vlvNGv~~~~~~ 228 (1162)
+++..+-..++|+.+ .|.++|||..+-..+
T Consensus 153 l~~~~~~a~~~gi~g-vPtfvv~g~~~~G~~ 182 (192)
T cd03022 153 LRANTEEAIARGVFG-VPTFVVDGEMFWGQD 182 (192)
T ss_pred HHHHHHHHHHcCCCc-CCeEEECCeeecccc
Confidence 888888889999955 699999999875433
No 59
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=38.49 E-value=2.4e+02 Score=29.59 Aligned_cols=95 Identities=13% Similarity=0.123 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHHhcC-cEEEEEEecCCccccccccccc-HHHHHHHHhhc
Q 001078 866 YERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYG-FEYELITYKWPTWLHKQKEKQR-IIWAYKILFLD 943 (1162)
Q Consensus 866 Y~~~l~v~I~SIl~nt~~~v~f~Il~~~lS~~~k~~L~~l~~~~~-~~i~fv~~~wp~~L~~~~~~~r-~~~~Y~RLfL~ 943 (1162)
.+..+.-++.||+..+-.++.+.|+.+.-++...+.+..+.+.+. ..+.++... .-. ....+.+ ...++.
T Consensus 12 ~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~--~~~-g~~~~~~~~n~g~~----- 83 (196)
T cd02520 12 VDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGG--EKV-GINPKVNNLIKGYE----- 83 (196)
T ss_pred CCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecC--CcC-CCCHhHHHHHHHHH-----
Confidence 355678889999976545689999998888888888888877654 344444322 100 0000101 111221
Q ss_pred ccCCCCCCeEEEEeCCeeecC-CchHHHh
Q 001078 944 VIFPLSLEKVIFVDADQVVRA-DMGELYD 971 (1162)
Q Consensus 944 ~lfP~~vdrVLYLDaD~IV~~-DL~eL~~ 971 (1162)
. ..-+-++++|+|.++.. -|.+|..
T Consensus 84 ~---a~~d~i~~~D~D~~~~~~~l~~l~~ 109 (196)
T cd02520 84 E---ARYDILVISDSDISVPPDYLRRMVA 109 (196)
T ss_pred h---CCCCEEEEECCCceEChhHHHHHHH
Confidence 1 24689999999998754 3444544
No 60
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=36.05 E-value=2.9e+02 Score=35.94 Aligned_cols=121 Identities=12% Similarity=0.077 Sum_probs=69.9
Q ss_pred CeeEEEEEecCcchH---HHHHHHHHHHHHcC-CCCeEEEEEeCCCChhHHH----HHHHHHHhcCc--EEEEEEecCCc
Q 001078 853 KTINIFSIASGHLYE---RFLKIMILSVLKNT-CRPVKFWFIKNYLSPQFKD----VIPHMAQEYGF--EYELITYKWPT 922 (1162)
Q Consensus 853 ~~InIf~vasg~~Y~---~~l~v~I~SIl~nt-~~~v~f~Il~~~lS~~~k~----~L~~l~~~~~~--~i~fv~~~wp~ 922 (1162)
..+-|+.-++|..-+ ..+..++.|+...+ ..++.|+|++|.-+++... .+..++++++. .+.+..-.+
T Consensus 124 ~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~-- 201 (691)
T PRK05454 124 ARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRR-- 201 (691)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCc--
Confidence 447777666776432 35778888998654 3579999999877766432 35667777743 332221111
Q ss_pred ccccccccccHHHHHHHHhhcccCCCCCCeEEEEeCCeeecCC-chHHHhcCCCCCeEEEee
Q 001078 923 WLHKQKEKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYDMDIKGRPLAYTP 983 (1162)
Q Consensus 923 ~L~~~~~~~r~~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~D-L~eL~~~Dl~g~~~Aav~ 983 (1162)
+...|..-+..+.+.+ -...|-++.+|||.+..+| +..|...-..+--+|++.
T Consensus 202 ---n~~~KaGNl~~~~~~~-----~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQ 255 (691)
T PRK05454 202 ---NVGRKAGNIADFCRRW-----GGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQ 255 (691)
T ss_pred ---CCCccHHHHHHHHHhc-----CCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEe
Confidence 1111222122222221 1358999999999999887 566664322233456664
No 61
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=35.69 E-value=3.5e+02 Score=32.90 Aligned_cols=102 Identities=15% Similarity=0.103 Sum_probs=64.8
Q ss_pred CeeEEEEEecCcchHHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCccccccccccc
Q 001078 853 KTINIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR 932 (1162)
Q Consensus 853 ~~InIf~vasg~~Y~~~l~v~I~SIl~nt~~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r 932 (1162)
..+-|+..+.++ +..+..++.|+++.+-.++.+.+++|+-+++..+.+.++.+++. .++++... . ++ .+.+
T Consensus 75 p~vsViIP~yNE--~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~-~v~vv~~~--~---n~-Gka~ 145 (444)
T PRK14583 75 PLVSILVPCFNE--GLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDP-RLRVIHLA--H---NQ-GKAI 145 (444)
T ss_pred CcEEEEEEeCCC--HHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCC-CEEEEEeC--C---CC-CHHH
Confidence 447777666654 46678899999876544689999998888888888888876653 34444332 1 11 1111
Q ss_pred H-HHHHHHHhhcccCCCCCCeEEEEeCCeeecCC-chHHHh
Q 001078 933 I-IWAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYD 971 (1162)
Q Consensus 933 ~-~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~D-L~eL~~ 971 (1162)
- ..+.. . ..-|-++.+|+|.+...| +.++..
T Consensus 146 AlN~gl~-------~-a~~d~iv~lDAD~~~~~d~L~~lv~ 178 (444)
T PRK14583 146 ALRMGAA-------A-ARSEYLVCIDGDALLDKNAVPYLVA 178 (444)
T ss_pred HHHHHHH-------h-CCCCEEEEECCCCCcCHHHHHHHHH
Confidence 1 11211 1 257899999999998765 455543
No 62
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=35.19 E-value=4.2e+02 Score=26.88 Aligned_cols=94 Identities=14% Similarity=0.225 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCcccccccccccHHHHHHHHhhcccC
Q 001078 867 ERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIF 946 (1162)
Q Consensus 867 ~~~l~v~I~SIl~nt~~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r~~~~Y~RLfL~~lf 946 (1162)
...+.-+|.|+...+..++.+.|+.+.-++...+.+..+.......+..+.-. +. ..+...+.-+- + ..
T Consensus 9 ~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~n~g-~-~~- 77 (182)
T cd06420 9 PEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQE-DE-------GFRKAKIRNKA-I-AA- 77 (182)
T ss_pred hHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcC-Cc-------chhHHHHHHHH-H-HH-
Confidence 46688899999987765788899988777777777777665443333222111 01 00111111110 0 11
Q ss_pred CCCCCeEEEEeCCeeecCC-chHHHhc
Q 001078 947 PLSLEKVIFVDADQVVRAD-MGELYDM 972 (1162)
Q Consensus 947 P~~vdrVLYLDaD~IV~~D-L~eL~~~ 972 (1162)
..-+-|++||+|.+...+ +..+.+.
T Consensus 78 -a~g~~i~~lD~D~~~~~~~l~~~~~~ 103 (182)
T cd06420 78 -AKGDYLIFIDGDCIPHPDFIADHIEL 103 (182)
T ss_pred -hcCCEEEEEcCCcccCHHHHHHHHHH
Confidence 135799999999988655 5555544
No 63
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=34.82 E-value=1e+02 Score=36.99 Aligned_cols=51 Identities=8% Similarity=0.065 Sum_probs=38.3
Q ss_pred eEEEEEEeccCCC-CCCCceEEEEecCCCCcccceEEEecceeeeeeeCCceeEEEe
Q 001078 695 ALVLTGHCSEKDH-EPPQGLQLILGTKSTPHLVDTLVMANLGYWQMKVSPGVWYLQL 750 (1162)
Q Consensus 695 ~ilieG~~~d~~~-~~p~Glql~L~~~~~~~~~dT~vM~nlGYfQlka~pG~~~l~l 750 (1162)
+.-|.|...|..+ .|..|..+.+..... .+++ ..-|.|.+..+||.|.|++
T Consensus 296 ~~gI~G~V~D~~~g~pl~~AtV~V~g~~~----~~~T-d~~G~f~~~l~pG~ytl~v 347 (375)
T cd03863 296 HRGVRGFVLDATDGRGILNATISVADINH----PVTT-YKDGDYWRLLVPGTYKVTA 347 (375)
T ss_pred cCeEEEEEEeCCCCCCCCCeEEEEecCcC----ceEE-CCCccEEEccCCeeEEEEE
Confidence 4457788888755 899999999965322 2333 3449999999999999986
No 64
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=34.00 E-value=3.5e+02 Score=29.05 Aligned_cols=104 Identities=13% Similarity=0.168 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEEEeCCCChh-HHHHHHHHHHhcCcEEEEEEecCCccccccccccc-HHHHHHHHhhcc
Q 001078 867 ERFLKIMILSVLKNTCRPVKFWFIKNYLSPQ-FKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR-IIWAYKILFLDV 944 (1162)
Q Consensus 867 ~~~l~v~I~SIl~nt~~~v~f~Il~~~lS~~-~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r-~~~~Y~RLfL~~ 944 (1162)
...+..++.|+...+-.++.++|+.+.-++. ..+.+..++++++..+.++... +. ...+.. ...+.. .
T Consensus 11 ~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~-~~----~G~~~~a~n~g~~-----~ 80 (236)
T cd06435 11 PEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVE-PL----PGAKAGALNYALE-----R 80 (236)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcC-CC----CCCchHHHHHHHH-----h
Confidence 3578889999986554568888888765544 3456667766666666655443 11 011111 112221 1
Q ss_pred cCCCCCCeEEEEeCCeeecC-CchHHHhcCCCCCeEEEe
Q 001078 945 IFPLSLEKVIFVDADQVVRA-DMGELYDMDIKGRPLAYT 982 (1162)
Q Consensus 945 lfP~~vdrVLYLDaD~IV~~-DL~eL~~~Dl~g~~~Aav 982 (1162)
.- .+.|-|+++|+|.++.. -|.++... ++..-++++
T Consensus 81 a~-~~~d~i~~lD~D~~~~~~~l~~l~~~-~~~~~~~~v 117 (236)
T cd06435 81 TA-PDAEIIAVIDADYQVEPDWLKRLVPI-FDDPRVGFV 117 (236)
T ss_pred cC-CCCCEEEEEcCCCCcCHHHHHHHHHH-hcCCCeeEE
Confidence 11 23688999999988754 34455433 333334444
No 65
>PRK06437 hypothetical protein; Provisional
Probab=33.02 E-value=38 Score=30.24 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.2
Q ss_pred HHHHhCCCCCCcEEEEcCEEec
Q 001078 453 LHRQLGVESGANAVITNGRVTF 474 (1162)
Q Consensus 453 ~~~~l~l~~~~~~~~~NGR~i~ 474 (1162)
+.+.||+++...++.+||++++
T Consensus 26 LL~~Lgi~~~~vaV~vNg~iv~ 47 (67)
T PRK06437 26 IIKDLGLDEEEYVVIVNGSPVL 47 (67)
T ss_pred HHHHcCCCCccEEEEECCEECC
Confidence 4456799999999999999997
No 66
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=32.67 E-value=86 Score=32.23 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=36.5
Q ss_pred EEEEEeccCCC-CCCCceEEEEecCCCC--cccceEEEecceeeee-----eeCCceeEEEe
Q 001078 697 VLTGHCSEKDH-EPPQGLQLILGTKSTP--HLVDTLVMANLGYWQM-----KVSPGVWYLQL 750 (1162)
Q Consensus 697 lieG~~~d~~~-~~p~Glql~L~~~~~~--~~~dT~vM~nlGYfQl-----ka~pG~~~l~l 750 (1162)
.|.||..|..+ .|..|+++.|....+. ....+.+-..-|-|.+ ...||.|.|..
T Consensus 28 ~Is~HVLDt~~G~PA~gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F 89 (137)
T PRK15036 28 ILSVHILNQQTGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVF 89 (137)
T ss_pred CeEEEEEeCCCCcCCCCCEEEEEEccCCceEEEEEEEECCCCCCccccCcccCCCeeEEEEE
Confidence 48999999987 9999999999764321 1223334444588865 13467777765
No 67
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=31.58 E-value=4.5e+02 Score=29.80 Aligned_cols=150 Identities=16% Similarity=0.196 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcC-CCCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCc-ccccccccccHHHHHHHHhhcccC
Q 001078 869 FLKIMILSVLKNT-CRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPT-WLHKQKEKQRIIWAYKILFLDVIF 946 (1162)
Q Consensus 869 ~l~v~I~SIl~nt-~~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~-~L~~~~~~~r~~~~Y~RLfL~~lf 946 (1162)
-+.-.+.|+.... +..+.+.|++++-++++.+.|..+++.+++.. ++...-+. .+.. .+.| =..-..
T Consensus 18 ~l~~~l~~l~~~~~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~-~i~~~~~~~~f~~--a~ar-------N~g~~~- 86 (281)
T PF10111_consen 18 RLRNCLESLSQFQSDPDFEIIVVDDGSSDEFDEELKKLCEKNGFIR-YIRHEDNGEPFSR--AKAR-------NIGAKY- 86 (281)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEEECCCchhHHHHHHHHHhccCceE-EEEcCCCCCCcCH--HHHH-------HHHHHH-
Confidence 3444566666533 35789999999888888888999988776552 12221111 0110 0111 111111
Q ss_pred CCCCCeEEEEeCCeeecCC-chHHHh----cCCCCCeEEEeecc-CC----CCCCCC-cccccchhhhhhcC------CC
Q 001078 947 PLSLEKVIFVDADQVVRAD-MGELYD----MDIKGRPLAYTPFC-DN----NKDMDG-YRFWRQGFWKDHLR------GR 1009 (1162)
Q Consensus 947 P~~vdrVLYLDaD~IV~~D-L~eL~~----~Dl~g~~~Aav~d~-~~----~~~~~g-~~~w~~gyw~~~L~------~~ 1009 (1162)
..-+-|+++|+|+++.-| +..+.+ ++-....+.+.|-. .+ ..-... ...|...+...... +.
T Consensus 87 -A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (281)
T PF10111_consen 87 -ARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNSLWEF 165 (281)
T ss_pred -cCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHhhcccccccc
Confidence 157899999999998654 444555 44443344444421 11 000001 11232222222222 23
Q ss_pred CeeeeeeeeEehHHHHHhcHH
Q 001078 1010 PYHISALYVVDLKRFRETAAG 1030 (1162)
Q Consensus 1010 ~YfNSGV~liNL~~~R~~~~~ 1030 (1162)
.++.+|.++++-+.|.+.+..
T Consensus 166 ~~~~s~~~~i~r~~f~~iGGf 186 (281)
T PF10111_consen 166 IAFASSCFLINREDFLEIGGF 186 (281)
T ss_pred ccccceEEEEEHHHHHHhCCC
Confidence 567889999999999987643
No 68
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=31.12 E-value=94 Score=37.24 Aligned_cols=53 Identities=11% Similarity=0.206 Sum_probs=39.9
Q ss_pred eEEEEEEeccCCCCCCCceEEEEecCCCCcccceEEEecceeeeeeeCCceeEEEe
Q 001078 695 ALVLTGHCSEKDHEPPQGLQLILGTKSTPHLVDTLVMANLGYWQMKVSPGVWYLQL 750 (1162)
Q Consensus 695 ~ilieG~~~d~~~~~p~Glql~L~~~~~~~~~dT~vM~nlGYfQlka~pG~~~l~l 750 (1162)
+.=|.|+..|.+..|..|..+++.... ...+++=..-|+|.+...||.|.+.+
T Consensus 294 ~~gI~G~V~D~~g~pi~~A~V~v~g~~---~~~~~~T~~~G~y~~~l~pG~Y~v~v 346 (376)
T cd03866 294 HLGVKGQVFDSNGNPIPNAIVEVKGRK---HICPYRTNVNGEYFLLLLPGKYMINV 346 (376)
T ss_pred cCceEEEEECCCCCccCCeEEEEEcCC---ceeEEEECCCceEEEecCCeeEEEEE
Confidence 445889999986699999999996432 11233444559999999999999886
No 69
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=30.86 E-value=2.5e+02 Score=33.94 Aligned_cols=124 Identities=14% Similarity=0.196 Sum_probs=66.9
Q ss_pred CCCCCCeEEEEeCCeeecCCchHHHhcCCCCCeEEEeeccCCCCCCCCcccccchhhhhhc-C--CCCeeeeeeeeEehH
Q 001078 946 FPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHL-R--GRPYHISALYVVDLK 1022 (1162)
Q Consensus 946 fP~~vdrVLYLDaD~IV~~DL~eL~~~Dl~g~~~Aav~d~~~~~~~~g~~~w~~gyw~~~L-~--~~~YfNSGV~liNL~ 1022 (1162)
+| +.+-+-|||+|.+|..--.+ +.++.+ .+.+ .--+| |...+ . +-.-.|+|+|+|=.-
T Consensus 195 ~P-eaEWiWWLDsDALImNmsfe---lPlery-----~~~N---------lVihg-~~~~l~~~kdW~GLNtGsFLIRNc 255 (429)
T PLN03182 195 HP-EVEWIWWMDSDALFTDMTFE---IPLEKY-----EGYN---------LVIHG-WDELVYDQKSWIGLNTGSFLIRNC 255 (429)
T ss_pred CC-CceEEEEecCCceeecCCCC---CCHhHc-----CCcC---------eeecc-chhhheeccccCccceeeEEEEcC
Confidence 67 69999999999988642111 122110 0000 01112 22222 2 235689999999665
Q ss_pred HHHH----------------hcHHHHHHHHHHHhccCCCCCCCCCCChhhhcccc------CceeecCCccccccCCCC-
Q 001078 1023 RFRE----------------TAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHT------VPIFSLPQEWLWCESWCG- 1079 (1162)
Q Consensus 1023 ~~R~----------------~~~~dkl~~~~~~ls~~~~sl~~~DQDllN~~~~~------~~I~~Lp~~wN~~~~~~~- 1079 (1162)
.|-. ..+|+.+...+. +...+..-||..|-+++.. .+++ |..+|-+...|..
T Consensus 256 qWSldlLDaWa~mgp~~~~~~~~g~~l~~~l~----~rp~~eaDDQSAlvyLl~~~~~~w~~kv~-le~~y~l~Gyw~~i 330 (429)
T PLN03182 256 QWSLDLLDAWAPMGPKGPIRDEAGKILTAELK----GRPAFEADDQSALVYLLLTQRERWGDKVY-LENSYYLHGYWVGL 330 (429)
T ss_pred HHHHHHHHHHHhcCCCCchhhhHHHHHHHhhc----CCCCCCcccHHHHHHHHHhcchhhccceE-EeecceeccccHHH
Confidence 5542 223333333332 3335556799999888732 2344 6666655554421
Q ss_pred --------------ccccCCCeEEeccC
Q 001078 1080 --------------NATKSKAKTIDLCN 1093 (1162)
Q Consensus 1080 --------------~e~~~~akiI~~~~ 1093 (1162)
....+.+-+.||++
T Consensus 331 v~~yee~~~~~~~g~gd~rwPfvtHF~G 358 (429)
T PLN03182 331 VDRYEEMMEKYHPGLGDDRWPFVTHFVG 358 (429)
T ss_pred HHHHHHHHHhcCCCCCCcccceeEeecc
Confidence 12335678899964
No 70
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=29.64 E-value=1.7e+02 Score=35.04 Aligned_cols=50 Identities=18% Similarity=0.387 Sum_probs=39.7
Q ss_pred eEEEEEEeccCCCCCCCceEEEEecCCCCcccceEEEecceeeeeeeCCceeEEEe
Q 001078 695 ALVLTGHCSEKDHEPPQGLQLILGTKSTPHLVDTLVMANLGYWQMKVSPGVWYLQL 750 (1162)
Q Consensus 695 ~ilieG~~~d~~~~~p~Glql~L~~~~~~~~~dT~vM~nlGYfQlka~pG~~~l~l 750 (1162)
|.=|.|+.+|.+..|..|..+.+.... .++ =...|+|.+..+||.|.+++
T Consensus 286 ~~gI~G~V~d~~g~pi~~A~V~v~g~~-----~~~-T~~~G~y~~~L~pG~y~v~v 335 (363)
T cd06245 286 HKGVHGVVTDKAGKPISGATIVLNGGH-----RVY-TKEGGYFHVLLAPGQHNINV 335 (363)
T ss_pred CcEEEEEEEcCCCCCccceEEEEeCCC-----ceE-eCCCcEEEEecCCceEEEEE
Confidence 666899999986699999999997531 232 34569999999999999986
No 71
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=28.33 E-value=1.7e+02 Score=32.26 Aligned_cols=75 Identities=25% Similarity=0.293 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHcCC----------CCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCcccccccccccHHHHH
Q 001078 868 RFLKIMILSVLKNTC----------RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAY 937 (1162)
Q Consensus 868 ~~l~v~I~SIl~nt~----------~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r~~~~Y 937 (1162)
..+.-+|.||+...- ..+.++|+.|+-+. . + ..+..-...+
T Consensus 11 ~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d---------------------~-------~-~gk~~~~~~~ 61 (244)
T cd04190 11 EELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK---------------------K-------N-RGKRDSQLWF 61 (244)
T ss_pred HHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc---------------------c-------c-CcchHHHHHH
Confidence 678889999996542 36888988887776 0 0 0011101111
Q ss_pred HHHhhcccCCCCCCeEEEEeCCeeecCC-chHHHh
Q 001078 938 KILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYD 971 (1162)
Q Consensus 938 ~RLfL~~lfP~~vdrVLYLDaD~IV~~D-L~eL~~ 971 (1162)
.+.+...+.-..-+-|+.+|+|.++..| |.+++.
T Consensus 62 ~~~~~~~~~~a~~e~i~~~DaD~~~~~~~l~~l~~ 96 (244)
T cd04190 62 FNYFCRVLFPDDPEFILLVDADTKFDPDSIVQLYK 96 (244)
T ss_pred HHHHHHHhhcCCCCEEEEECCCCcCCHhHHHHHHH
Confidence 2222222222357899999999999877 566664
No 72
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=28.11 E-value=3.1e+02 Score=32.45 Aligned_cols=108 Identities=19% Similarity=0.198 Sum_probs=60.8
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHcC--CCCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCcc-ccccc---
Q 001078 855 INIFSIASGHLYERFLKIMILSVLKNT--CRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTW-LHKQK--- 928 (1162)
Q Consensus 855 InIf~vasg~~Y~~~l~v~I~SIl~nt--~~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~-L~~~~--- 928 (1162)
+.|..++++. ..++.-+|.||++.. ..+..++|..++-.++..+.+ +.++..+..+. .+.. ..+..
T Consensus 2 ~PVlv~ayNR--p~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v----~~~~~~i~~i~--~~~~~~~~~~~~~ 73 (334)
T cd02514 2 IPVLVIACNR--PDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVA----KSFGDGVTHIQ--HPPISIKNVNPPH 73 (334)
T ss_pred cCEEEEecCC--HHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHH----HhhccccEEEE--cccccccccCccc
Confidence 4465566654 457889999999874 457889998887665544333 33333333222 1111 11100
Q ss_pred -ccc-cHHHHHHHHhhcccCCC-CCCeEEEEeCCeeecCCchHHH
Q 001078 929 -EKQ-RIIWAYKILFLDVIFPL-SLEKVIFVDADQVVRADMGELY 970 (1162)
Q Consensus 929 -~~~-r~~~~Y~RLfL~~lfP~-~vdrVLYLDaD~IV~~DL~eL~ 970 (1162)
... ..++..++.-+..+|-. +.++||.||.|.++--|.-+.+
T Consensus 74 ~~~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf 118 (334)
T cd02514 74 KFQGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYF 118 (334)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHH
Confidence 000 11233334445555521 4899999999999888854443
No 73
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=27.23 E-value=67 Score=34.36 Aligned_cols=106 Identities=15% Similarity=0.202 Sum_probs=54.9
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHHhcCc-EEEEEEecCCcccccccccccH
Q 001078 855 INIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGF-EYELITYKWPTWLHKQKEKQRI 933 (1162)
Q Consensus 855 InIf~vasg~~Y~~~l~v~I~SIl~nt~~~v~f~Il~~~lS~~~k~~L~~l~~~~~~-~i~fv~~~wp~~L~~~~~~~r~ 933 (1162)
|-|...+.+. ...+.-++.|+++.+-.+++++|+.+.-+++..+.+..++..+.. .++.+.-. .... ...+.+-
T Consensus 3 v~Vvip~~~~--~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~--~~~g-~~~k~~a 77 (228)
T PF13641_consen 3 VSVVIPAYNE--DDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRP--RNPG-PGGKARA 77 (228)
T ss_dssp EEEE--BSS---HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE------HH-HHHHHHH
T ss_pred EEEEEEecCC--HHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecC--CCCC-cchHHHH
Confidence 3444444443 457788999999543346999999987777777778888777653 45544332 1000 0011111
Q ss_pred HHHHHHHhhcccCCCCCCeEEEEeCCeeecCC-chHHHhc
Q 001078 934 IWAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYDM 972 (1162)
Q Consensus 934 ~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~D-L~eL~~~ 972 (1162)
. ...+... ..+-|+++|+|.++..| |.++...
T Consensus 78 ~----n~~~~~~---~~d~i~~lD~D~~~~p~~l~~~~~~ 110 (228)
T PF13641_consen 78 L----NEALAAA---RGDYILFLDDDTVLDPDWLERLLAA 110 (228)
T ss_dssp H----HHHHHH------SEEEEE-SSEEE-CHHHHHHHHH
T ss_pred H----HHHHHhc---CCCEEEEECCCcEECHHHHHHHHHH
Confidence 1 1111111 27799999999988543 5555433
No 74
>PLN03181 glycosyltransferase; Provisional
Probab=26.50 E-value=3e+02 Score=33.40 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=15.9
Q ss_pred CCCCCCeEEEEeCCeeecC
Q 001078 946 FPLSLEKVIFVDADQVVRA 964 (1162)
Q Consensus 946 fP~~vdrVLYLDaD~IV~~ 964 (1162)
+| +.+-+-|||+|++|..
T Consensus 196 ~P-eAEWfWWLDsDALIMN 213 (453)
T PLN03181 196 HP-EAEWIWWVDSDAVFTD 213 (453)
T ss_pred CC-CceEEEEecCCceeec
Confidence 78 5999999999998874
No 75
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=26.14 E-value=3.5e+02 Score=28.53 Aligned_cols=95 Identities=11% Similarity=0.077 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHcCCCC--eEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCcccccccccccHHHHHHHHhhc
Q 001078 866 YERFLKIMILSVLKNTCRP--VKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLD 943 (1162)
Q Consensus 866 Y~~~l~v~I~SIl~nt~~~--v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r~~~~Y~RLfL~ 943 (1162)
-...+.-+|.||+..+-.. +.++|+.+.-++...+.+....+..+..+..+... . .. ......+.-+ -+.
T Consensus 8 ~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~--~--~~---~~g~~~a~n~-g~~ 79 (229)
T cd04192 8 EAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNS--R--VS---ISGKKNALTT-AIK 79 (229)
T ss_pred cHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeecc--C--cc---cchhHHHHHH-HHH
Confidence 3567888999999877544 88999988766666666651222223344333322 1 00 0011111111 111
Q ss_pred ccCCCCCCeEEEEeCCeeecCC-chHHHh
Q 001078 944 VIFPLSLEKVIFVDADQVVRAD-MGELYD 971 (1162)
Q Consensus 944 ~lfP~~vdrVLYLDaD~IV~~D-L~eL~~ 971 (1162)
. ..-+-|+++|+|.++..| |..|..
T Consensus 80 ~---~~~d~i~~~D~D~~~~~~~l~~l~~ 105 (229)
T cd04192 80 A---AKGDWIVTTDADCVVPSNWLLTFVA 105 (229)
T ss_pred H---hcCCEEEEECCCcccCHHHHHHHHH
Confidence 1 146899999999987644 444554
No 76
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=25.25 E-value=5.5e+02 Score=28.89 Aligned_cols=104 Identities=10% Similarity=0.049 Sum_probs=58.3
Q ss_pred HHHHHHHHHHc-----CCCCeEEEEEeCCCChhHH----HHHHHHHHhcC--cEEEEEEecCCcccccccccccHHHHHH
Q 001078 870 LKIMILSVLKN-----TCRPVKFWFIKNYLSPQFK----DVIPHMAQEYG--FEYELITYKWPTWLHKQKEKQRIIWAYK 938 (1162)
Q Consensus 870 l~v~I~SIl~n-----t~~~v~f~Il~~~lS~~~k----~~L~~l~~~~~--~~i~fv~~~wp~~L~~~~~~~r~~~~Y~ 938 (1162)
+...+.|.+.. ...++.++++.+.-.++.. ..+.++++++. ..+.++.-. . ..+...++.
T Consensus 15 l~~~l~~~~~~~~~~~~~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~--~-------~~g~Kag~l 85 (254)
T cd04191 15 VFAGLRAMYESLAKTGLADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRR--E-------NTGRKAGNI 85 (254)
T ss_pred HHHHHHHHHHHHHhcCCcCceEEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcC--C-------CCCccHHHH
Confidence 55667776642 2236889888876655433 23455666553 333332221 1 111124455
Q ss_pred HHhhcccCCCCCCeEEEEeCCeeecCC-chHHHhcCCCCCeEEEee
Q 001078 939 ILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYDMDIKGRPLAYTP 983 (1162)
Q Consensus 939 RLfL~~lfP~~vdrVLYLDaD~IV~~D-L~eL~~~Dl~g~~~Aav~ 983 (1162)
+-++...- ...+-|+.+|||.++..| |..+...-..+.-+|+|-
T Consensus 86 ~~~~~~~~-~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq 130 (254)
T cd04191 86 ADFCRRWG-SRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQ 130 (254)
T ss_pred HHHHHHhC-CCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 55554432 247899999999998765 777775433344466663
No 77
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=25.09 E-value=34 Score=40.49 Aligned_cols=18 Identities=22% Similarity=0.582 Sum_probs=16.7
Q ss_pred EEEeCCeeecCCchHHHh
Q 001078 954 IFVDADQVVRADMGELYD 971 (1162)
Q Consensus 954 LYLDaD~IV~~DL~eL~~ 971 (1162)
||||+|+||.+++..|-|
T Consensus 242 vYLDTDvIvLksl~~l~N 259 (409)
T KOG1928|consen 242 VYLDTDVIVLKSLSNLRN 259 (409)
T ss_pred EEeeccEEEecccccccc
Confidence 899999999999999875
No 78
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=25.02 E-value=6.4e+02 Score=26.06 Aligned_cols=89 Identities=16% Similarity=0.236 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEEeCCC-ChhHHHHHHHHHHhcCcEEEEEEecCCcccccccccccHHHHHHHHhhcccC
Q 001078 868 RFLKIMILSVLKNTCRPVKFWFIKNYL-SPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRIIWAYKILFLDVIF 946 (1162)
Q Consensus 868 ~~l~v~I~SIl~nt~~~v~f~Il~~~l-S~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r~~~~Y~RLfL~~lf 946 (1162)
.++..++.||+..+-.+..+.|+.++- ++...+.+..+.++++ +.++... . ..+...+.-.-+- .
T Consensus 13 ~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~--i~~i~~~--~-------n~G~~~a~N~g~~---~ 78 (201)
T cd04195 13 EFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP--LKVVPLE--K-------NRGLGKALNEGLK---H 78 (201)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCC--eEEEEcC--c-------cccHHHHHHHHHH---h
Confidence 478899999998765467777777665 5556666777776665 4444332 1 0111111111111 1
Q ss_pred CCCCCeEEEEeCCeeecC-CchHHHh
Q 001078 947 PLSLEKVIFVDADQVVRA-DMGELYD 971 (1162)
Q Consensus 947 P~~vdrVLYLDaD~IV~~-DL~eL~~ 971 (1162)
..-+-|+++|+|.+... -+..++.
T Consensus 79 -a~gd~i~~lD~Dd~~~~~~l~~~~~ 103 (201)
T cd04195 79 -CTYDWVARMDTDDISLPDRFEKQLD 103 (201)
T ss_pred -cCCCEEEEeCCccccCcHHHHHHHH
Confidence 24678999999987654 3444443
No 79
>PF12633 Adenyl_cycl_N: Adenylate cyclase NT domain; InterPro: IPR024685 Adenylate cyclase is the enzyme responsible for the synthesis of cAMP from ATP. On the basis of sequence similarity, it has been proposed that there are three different classes of adenylate cyclases [, ]. Class I cyclases are found in enterobacteria and related Gram-negative bacteria. This entry represents the N-terminal domain of class-I adenylate cyclases.
Probab=24.62 E-value=94 Score=34.08 Aligned_cols=52 Identities=15% Similarity=0.348 Sum_probs=39.6
Q ss_pred HHHHHHcCCCCeEEEEEe-CCCChhHHHHHH-------HHHHhcCcEEEEEEecCCccccc
Q 001078 874 ILSVLKNTCRPVKFWFIK-NYLSPQFKDVIP-------HMAQEYGFEYELITYKWPTWLHK 926 (1162)
Q Consensus 874 I~SIl~nt~~~v~f~Il~-~~lS~~~k~~L~-------~l~~~~~~~i~fv~~~wp~~L~~ 926 (1162)
+-||-.+.++.+++||.+ +.++++-++.|+ .+++.+|++++|+-++ +..++.
T Consensus 106 ~gSi~Qs~~SDlDiWvCh~~~L~~~~~~~Lq~K~~~i~~WA~~~gvEv~FfLmd-~~~fr~ 165 (204)
T PF12633_consen 106 TGSIGQSSSSDLDIWVCHDSDLSPEERQLLQQKCDLIEQWAASFGVEVHFFLMD-EERFRH 165 (204)
T ss_pred CccccCCCCCCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHcCCEEEEEEEC-HHHHhc
Confidence 446666667789999988 679988776554 4668899999999997 555554
No 80
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=24.00 E-value=8.2e+02 Score=25.83 Aligned_cols=100 Identities=16% Similarity=0.275 Sum_probs=56.3
Q ss_pred EEEEEecCcchHHHHHHHHHHHHHcCCCC--eEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCccccccccccc-
Q 001078 856 NIFSIASGHLYERFLKIMILSVLKNTCRP--VKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR- 932 (1162)
Q Consensus 856 nIf~vasg~~Y~~~l~v~I~SIl~nt~~~--v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r- 932 (1162)
=|+..+.+.. ...+..++.|++.-+-.+ +.+.|+.+.-+++..+.+..+...+. +..+... . +...+.+
T Consensus 4 sviip~~n~~-~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--~~~~~~~--~---~~~~~~~~ 75 (234)
T cd06421 4 DVFIPTYNEP-LEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEYG--YRYLTRP--D---NRHAKAGN 75 (234)
T ss_pred EEEEecCCCc-HHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhcccC--ceEEEeC--C---CCCCcHHH
Confidence 3444444432 356788999999755434 78888888877777777777665442 2222221 1 1111111
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEEeCCeeecCC-chHHHh
Q 001078 933 IIWAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYD 971 (1162)
Q Consensus 933 ~~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~D-L~eL~~ 971 (1162)
...+... ..-+-|+++|+|.++..| +..|..
T Consensus 76 ~n~~~~~--------a~~d~i~~lD~D~~~~~~~l~~l~~ 107 (234)
T cd06421 76 LNNALAH--------TTGDFVAILDADHVPTPDFLRRTLG 107 (234)
T ss_pred HHHHHHh--------CCCCEEEEEccccCcCccHHHHHHH
Confidence 1122211 147899999999988654 333443
No 81
>PF03666 NPR3: Nitrogen Permease regulator of amino acid transport activity 3; InterPro: IPR005365 This protein, also known in yeasts as Rmd11, complexes with NPR2, PF06218 from PFAM. This complex heterodimer is responsible for inactivating TORC1. an evolutionarily conserved protein complex that controls cell size via nutritional input signals, specifically, in response to amino acid starvation [].
Probab=23.99 E-value=4e+02 Score=32.88 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=22.7
Q ss_pred hhhhhhcccchhhhHHHHHHHHHHhCCCcCCceeeEec
Q 001078 184 MLLKLEKEKTFMDQSQESSMFVFKLGLTKLKCCLLMNG 221 (1162)
Q Consensus 184 ~~~~l~~~~~~d~~~~~~~~f~~Rlgl~~~~p~vlvNG 221 (1162)
.+..++..+.....++..-+=+.+.|+ -.+.+|+
T Consensus 187 l~~~il~~SsLAr~L~~iy~~Is~s~i----A~l~in~ 220 (452)
T PF03666_consen 187 LYEEILKKSSLARALKDIYDAISTSGI----AHLTINN 220 (452)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhcCCe----EEEEECC
Confidence 345566666666666666666666666 6788898
No 82
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=23.95 E-value=5e+02 Score=28.91 Aligned_cols=39 Identities=5% Similarity=-0.076 Sum_probs=31.4
Q ss_pred cccEEEEEcCCCcchHHHHHHHHHHHhcccceEEEEEee
Q 001078 49 LFHAVYVLDPATVCGLEVIDMIMSLYENHFPLRFGVILY 87 (1162)
Q Consensus 49 l~nlV~vvDps~~~~l~~l~~i~~~~~~~iPvR~GlVp~ 87 (1162)
=+.++++-||..+...++...+..+.+.++-+|+=.+|+
T Consensus 108 k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~ 146 (232)
T PRK10877 108 KHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPR 146 (232)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccC
Confidence 356899999999999999999998888887777733444
No 83
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=22.87 E-value=7.5e+02 Score=26.27 Aligned_cols=97 Identities=12% Similarity=0.203 Sum_probs=56.6
Q ss_pred EEEEEecCcchHHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCccccccccccc-HH
Q 001078 856 NIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR-II 934 (1162)
Q Consensus 856 nIf~vasg~~Y~~~l~v~I~SIl~nt~~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r-~~ 934 (1162)
-|...+.+.. ...+..+|.|+...+ ++.++|+.++-+++..+.+..... ...+..+.-. ...+.. +.
T Consensus 3 sVvIp~~ne~-~~~l~~~l~sl~~q~--~~eiivvdd~s~d~~~~~l~~~~~--~~~~~v~~~~-------~~g~~~a~n 70 (235)
T cd06434 3 TVIIPVYDED-PDVFRECLRSILRQK--PLEIIVVTDGDDEPYLSILSQTVK--YGGIFVITVP-------HPGKRRALA 70 (235)
T ss_pred EEEEeecCCC-hHHHHHHHHHHHhCC--CCEEEEEeCCCChHHHHHHHhhcc--CCcEEEEecC-------CCChHHHHH
Confidence 3444444431 277889999999877 788999988877776666633322 1222222211 111111 11
Q ss_pred HHHHHHhhcccCCCCCCeEEEEeCCeeecCC-chHHHhc
Q 001078 935 WAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYDM 972 (1162)
Q Consensus 935 ~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~D-L~eL~~~ 972 (1162)
.+... ..-|-|+++|+|.++..| |.+|...
T Consensus 71 ~g~~~--------a~~d~v~~lD~D~~~~~~~l~~l~~~ 101 (235)
T cd06434 71 EGIRH--------VTTDIVVLLDSDTVWPPNALPEMLKP 101 (235)
T ss_pred HHHHH--------hCCCEEEEECCCceeChhHHHHHHHh
Confidence 22211 147899999999999876 6666643
No 84
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=22.38 E-value=3.2e+02 Score=33.49 Aligned_cols=114 Identities=16% Similarity=0.183 Sum_probs=56.9
Q ss_pred cCCeeEEEEEecCcchHHHHHHHHHHHHHcCC--CCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEe-cCCcc-ccc
Q 001078 851 HGKTINIFSIASGHLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITY-KWPTW-LHK 926 (1162)
Q Consensus 851 ~~~~InIf~vasg~~Y~~~l~v~I~SIl~nt~--~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~-~wp~~-L~~ 926 (1162)
....+.|..+||+. -.++.-++.||+++.+ +.+.+.|.-++-.++.. ..++.|+..+..+.. +.-.. ..+
T Consensus 91 ~~~~~pVlV~AcNR--p~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~----~vi~~y~~~v~~i~~~~~~~i~~~~ 164 (434)
T PF03071_consen 91 KEPVIPVLVFACNR--PDYLRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVA----EVIKSYGDQVTYIQHPDFSPITIPP 164 (434)
T ss_dssp ------EEEEESS---TT-HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHH----HHHHGGGGGSEEEE-S--S-----T
T ss_pred CCCcceEEEEecCC--cHHHHHHHHHHHHcCCCCCCccEEEEecCCcHHHH----HHHHHhhhhheeeecCCcCCceeCc
Confidence 34568888888887 2336678899998754 34555555555444443 334455433433322 11010 111
Q ss_pred cc--ccc-cHHHHHHHHhhcccCCC-CCCeEEEEeCCeeecCCchHHH
Q 001078 927 QK--EKQ-RIIWAYKILFLDVIFPL-SLEKVIFVDADQVVRADMGELY 970 (1162)
Q Consensus 927 ~~--~~~-r~~~~Y~RLfL~~lfP~-~vdrVLYLDaD~IV~~DL~eL~ 970 (1162)
.. ... ..++..++.-|..+|.. ..++||.|.-|+.+--|.-+-|
T Consensus 165 ~~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf 212 (434)
T PF03071_consen 165 KEKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYF 212 (434)
T ss_dssp T-GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHH
Confidence 11 111 11455667777777743 4889999999999998887766
No 85
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=20.76 E-value=9.4e+02 Score=25.54 Aligned_cols=99 Identities=16% Similarity=0.222 Sum_probs=58.4
Q ss_pred EEEEecCcchHHHHHHHHHHHHHcCC--CCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCcccccccccccHH
Q 001078 857 IFSIASGHLYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRII 934 (1162)
Q Consensus 857 If~vasg~~Y~~~l~v~I~SIl~nt~--~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r~~ 934 (1162)
|...+.+ -...+.-++.|+...+. ..+.++|+.+.-+++..+.+..+..+ ...+.++.- +. ..... .+.
T Consensus 4 Iiip~~n--~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~-~~~v~~i~~--~~---~~~~~-a~N 74 (249)
T cd02525 4 IIIPVRN--EEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAK-DPRIRLIDN--PK---RIQSA-GLN 74 (249)
T ss_pred EEEEcCC--chhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhc-CCeEEEEeC--CC---CCchH-HHH
Confidence 4444344 34667888999987654 46889999988787777877777654 223444422 11 00000 111
Q ss_pred HHHHHHhhcccCCCCCCeEEEEeCCeeecCC-chHHHhc
Q 001078 935 WAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELYDM 972 (1162)
Q Consensus 935 ~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~D-L~eL~~~ 972 (1162)
.+... . .-|-++++|+|.++..+ +..+.+.
T Consensus 75 ~g~~~------a--~~d~v~~lD~D~~~~~~~l~~~~~~ 105 (249)
T cd02525 75 IGIRN------S--RGDIIIRVDAHAVYPKDYILELVEA 105 (249)
T ss_pred HHHHH------h--CCCEEEEECCCccCCHHHHHHHHHH
Confidence 12111 1 47899999999987543 6666643
No 86
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=20.63 E-value=1.3e+02 Score=26.41 Aligned_cols=40 Identities=20% Similarity=0.403 Sum_probs=31.8
Q ss_pred CceEEEEecCCCCcccc-eEEEecceeeeee-eCCceeEEEe
Q 001078 711 QGLQLILGTKSTPHLVD-TLVMANLGYWQMK-VSPGVWYLQL 750 (1162)
Q Consensus 711 ~Glql~L~~~~~~~~~d-T~vM~nlGYfQlk-a~pG~~~l~l 750 (1162)
.|+.++|.+.++..... +.+-..-|.+.|+ ..||.|.|+-
T Consensus 2 ~Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E 43 (70)
T PF05738_consen 2 AGATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKE 43 (70)
T ss_dssp STEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEE
T ss_pred CCeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEE
Confidence 68999998887766665 6777777999999 5799988763
No 87
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=20.37 E-value=6.8e+02 Score=27.16 Aligned_cols=93 Identities=12% Similarity=0.078 Sum_probs=51.9
Q ss_pred chHHHHHHHHHHHHHcCC--CCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCccccccccccc-HHHHHHHHh
Q 001078 865 LYERFLKIMILSVLKNTC--RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR-IIWAYKILF 941 (1162)
Q Consensus 865 ~Y~~~l~v~I~SIl~nt~--~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r-~~~~Y~RLf 941 (1162)
+-+..+.-++.||+..+- ..+.+.|+.+.-++...+.+..+.......+.. +. +. .+. .+.. ...++..
T Consensus 11 Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~--~~-~~--~~~-G~~~a~n~g~~~-- 82 (241)
T cd06427 11 KEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVV--VP-PS--QPR-TKPKACNYALAF-- 82 (241)
T ss_pred CcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEE--ec-CC--CCC-chHHHHHHHHHh--
Confidence 446788999999987542 247788888776777777666654221223322 21 10 000 0111 1122211
Q ss_pred hcccCCCCCCeEEEEeCCeeecC-CchHHHh
Q 001078 942 LDVIFPLSLEKVIFVDADQVVRA-DMGELYD 971 (1162)
Q Consensus 942 L~~lfP~~vdrVLYLDaD~IV~~-DL~eL~~ 971 (1162)
..-+-|+++|+|.++.- .+.++..
T Consensus 83 ------a~gd~i~~~DaD~~~~~~~l~~~~~ 107 (241)
T cd06427 83 ------ARGEYVVIYDAEDAPDPDQLKKAVA 107 (241)
T ss_pred ------cCCCEEEEEcCCCCCChHHHHHHHH
Confidence 23588999999988754 4555654
No 88
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=20.17 E-value=9.1e+02 Score=25.20 Aligned_cols=96 Identities=15% Similarity=0.114 Sum_probs=52.7
Q ss_pred chHHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCccccccccccc-HHHHHHHHhhc
Q 001078 865 LYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR-IIWAYKILFLD 943 (1162)
Q Consensus 865 ~Y~~~l~v~I~SIl~nt~~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r-~~~~Y~RLfL~ 943 (1162)
+-+..+.-+|.||+.-+ .++.++|+.+.-++...+.++ +. .....+.++...++. ....+.. ..+++.+.--.
T Consensus 7 Ne~~~l~~~l~sl~~~~-~~~eIivvdd~S~D~t~~~~~-~~-~~~~~v~~i~~~~~~---~~~Gk~~aln~g~~~~~~~ 80 (191)
T cd06436 7 NEEAVIQRTLASLLRNK-PNFLVLVIDDASDDDTAGIVR-LA-ITDSRVHLLRRHLPN---ARTGKGDALNAAYDQIRQI 80 (191)
T ss_pred ccHHHHHHHHHHHHhCC-CCeEEEEEECCCCcCHHHHHh-he-ecCCcEEEEeccCCc---CCCCHHHHHHHHHHHHhhh
Confidence 33577888999999766 568899999887877777665 22 222345555433221 0011111 11333222110
Q ss_pred c---cCCCCCCeEEEEeCCeeecCCc
Q 001078 944 V---IFPLSLEKVIFVDADQVVRADM 966 (1162)
Q Consensus 944 ~---lfP~~vdrVLYLDaD~IV~~DL 966 (1162)
. =.+..-+-|+++|+|.++..+.
T Consensus 81 ~~~~g~~~~~d~v~~~DaD~~~~~~~ 106 (191)
T cd06436 81 LIEEGADPERVIIAVIDADGRLDPNA 106 (191)
T ss_pred ccccccCCCccEEEEECCCCCcCHhH
Confidence 0 0111235799999999876544
No 89
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=20.12 E-value=5.3e+02 Score=25.27 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=35.0
Q ss_pred cchHHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHHhc
Q 001078 864 HLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEY 909 (1162)
Q Consensus 864 ~~Y~~~l~v~I~SIl~nt~~~v~f~Il~~~lS~~~k~~L~~l~~~~ 909 (1162)
.+.+..+..++.|++..+-....+.|+.++-++...+.+..+....
T Consensus 12 ~n~~~~l~~~l~s~~~q~~~~~eiivvddgs~d~t~~~~~~~~~~~ 57 (291)
T COG0463 12 YNEEEYLPEALESLLNQTYKDFEIIVVDDGSTDGTTEIAIEYGAKD 57 (291)
T ss_pred cchhhhHHHHHHHHHhhhhcceEEEEEeCCCCCChHHHHHHHhhhc
Confidence 4567899999999998876566777777777777777777776543
Done!