Query 001078
Match_columns 1162
No_of_seqs 291 out of 1262
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 09:56:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001078.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001078hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 100.0 8.4E-40 2.9E-44 365.0 16.8 254 854-1122 5-274 (276)
2 1g9r_A Glycosyl transferase; a 100.0 5.3E-35 1.8E-39 331.6 11.7 229 855-1101 1-253 (311)
3 1ll2_A Glycogenin-1; protein-s 99.8 5E-21 1.7E-25 218.8 15.1 229 854-1127 4-265 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 99.8 6.7E-20 2.3E-24 202.5 12.9 203 858-1103 8-224 (263)
5 1o7q_A N-acetyllactosaminide a 96.4 0.051 1.8E-06 59.7 15.4 224 852-1091 47-278 (289)
6 3ioh_A Histo-blood group ABO s 95.0 0.17 5.8E-06 55.9 12.8 225 851-1091 56-288 (298)
7 4dvc_A Thiol:disulfide interch 93.7 2.6 8.9E-05 42.1 17.6 158 315-492 22-179 (184)
8 3bci_A Disulfide bond protein 92.6 2 7E-05 43.6 14.9 141 50-226 13-162 (186)
9 3hz8_A Thiol:disulfide interch 92.4 6.1 0.00021 40.6 18.5 142 48-226 24-167 (193)
10 3gn3_A Putative protein-disulf 92.4 4.6 0.00016 41.4 17.4 165 314-490 14-181 (182)
11 3gha_A Disulfide bond formatio 92.2 3.3 0.00011 43.1 16.3 142 50-226 31-176 (202)
12 3gha_A Disulfide bond formatio 91.9 3.6 0.00012 42.8 16.2 163 314-498 29-195 (202)
13 3h93_A Thiol:disulfide interch 91.9 6.9 0.00024 39.7 18.1 139 49-226 26-165 (192)
14 2rem_A Disulfide oxidoreductas 90.9 12 0.0004 37.8 18.5 138 50-224 27-166 (193)
15 3gyk_A 27KDA outer membrane pr 90.5 4.8 0.00016 40.1 14.9 136 49-227 23-158 (175)
16 3hd5_A Thiol:disulfide interch 90.5 4.3 0.00015 41.4 14.7 140 48-227 25-165 (195)
17 4ayl_A BOGT-metal-independent 90.4 1.5 5E-05 47.3 11.2 214 854-1089 2-227 (246)
18 4dvc_A Thiol:disulfide interch 89.1 6.6 0.00023 39.1 14.7 137 51-225 24-162 (184)
19 2znm_A Thiol:disulfide interch 88.0 14 0.00049 37.3 16.5 138 50-225 24-163 (195)
20 3hd5_A Thiol:disulfide interch 85.5 33 0.0011 34.6 19.3 160 314-497 25-186 (195)
21 3hz8_A Thiol:disulfide interch 84.3 39 0.0013 34.4 18.1 159 314-495 24-183 (193)
22 3gmf_A Protein-disulfide isome 83.9 44 0.0015 34.7 18.7 164 314-493 15-195 (205)
23 3l9v_A Putative thiol-disulfid 83.3 15 0.00053 37.4 14.0 137 50-227 16-159 (189)
24 3gn3_A Putative protein-disulf 82.1 7.8 0.00027 39.7 11.1 146 50-225 16-166 (182)
25 3gyk_A 27KDA outer membrane pr 81.2 44 0.0015 32.9 18.9 148 314-491 22-169 (175)
26 3bci_A Disulfide bond protein 81.2 47 0.0016 33.2 16.6 156 314-491 11-174 (186)
27 3h93_A Thiol:disulfide interch 78.9 57 0.0019 32.7 16.6 160 313-495 24-184 (192)
28 3f4s_A Alpha-DSBA1, putative u 78.8 47 0.0016 35.1 16.2 164 314-496 39-212 (226)
29 3l9s_A Thiol:disulfide interch 77.2 39 0.0013 34.5 14.7 137 50-227 23-165 (191)
30 3gmf_A Protein-disulfide isome 76.0 27 0.00094 36.3 13.2 45 181-226 136-181 (205)
31 3l9s_A Thiol:disulfide interch 75.3 51 0.0017 33.6 14.9 140 315-475 22-164 (191)
32 3l9v_A Putative thiol-disulfid 74.4 54 0.0018 33.2 14.7 138 316-475 16-158 (189)
33 3f4s_A Alpha-DSBA1, putative u 71.6 72 0.0024 33.6 15.3 157 30-225 21-186 (226)
34 3feu_A Putative lipoprotein; a 70.5 14 0.0005 37.5 9.2 141 49-224 23-163 (185)
35 3fz5_A Possible 2-hydroxychrom 67.6 39 0.0013 34.7 11.9 99 118-228 90-188 (202)
36 2rem_A Disulfide oxidoreductas 54.6 1.7E+02 0.0058 29.0 19.9 159 314-494 25-183 (193)
37 3c7m_A Thiol:disulfide interch 53.7 90 0.0031 31.0 11.6 139 51-224 20-173 (195)
38 2imf_A HCCA isomerase, 2-hydro 49.9 2.1E+02 0.0073 28.8 13.8 46 182-228 137-182 (203)
39 4hv0_A AVTR; ribbon-helix-heli 47.0 96 0.0033 28.8 8.9 57 449-508 28-95 (106)
40 1z6m_A Conserved hypothetical 45.0 1.8E+02 0.0061 28.4 12.0 30 196-226 133-162 (175)
41 2znm_A Thiol:disulfide interch 43.8 2.5E+02 0.0086 27.8 15.2 156 314-493 22-178 (195)
42 2in3_A Hypothetical protein; D 42.9 2.8E+02 0.0095 28.0 16.7 94 118-223 93-188 (216)
43 3gl5_A Putative DSBA oxidoredu 40.5 2.3E+02 0.0078 29.8 12.6 40 182-222 152-192 (239)
44 1qg8_A Protein (spore coat pol 33.5 1.5E+02 0.005 30.6 9.6 107 855-970 3-110 (255)
45 3gv1_A Disulfide interchange p 33.3 3.2E+02 0.011 26.6 11.4 119 315-491 15-135 (147)
46 2l32_A Small archaeal modifier 29.6 19 0.00065 31.6 1.5 24 453-476 26-49 (74)
47 3bcv_A Putative glycosyltransf 25.4 2.7E+02 0.0091 28.2 9.8 99 855-970 7-106 (240)
48 1xhb_A Polypeptide N-acetylgal 25.0 2.5E+02 0.0084 32.3 10.4 103 854-971 30-137 (472)
49 1r4w_A Glutathione S-transfera 24.1 5.9E+02 0.02 26.0 15.4 160 51-226 7-199 (226)
50 2p9r_A Alpha-2-M, alpha-2-macr 23.0 2E+02 0.0068 25.9 7.3 57 697-753 20-85 (102)
51 2d7i_A Polypeptide N-acetylgal 21.2 3.3E+02 0.011 32.5 10.7 104 853-971 112-219 (570)
52 3feu_A Putative lipoprotein; a 20.8 1.2E+02 0.0042 30.5 5.9 158 315-492 23-181 (185)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=100.00 E-value=8.4e-40 Score=364.99 Aligned_cols=254 Identities=18% Similarity=0.214 Sum_probs=190.0
Q ss_pred eeEEEEEecCcchHHHHHHHHHHHHHcCC-CCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCccccccccccc
Q 001078 854 TINIFSIASGHLYERFLKIMILSVLKNTC-RPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQR 932 (1162)
Q Consensus 854 ~InIf~vasg~~Y~~~l~v~I~SIl~nt~-~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r 932 (1162)
.|||+. ++|++|.++++++|+||++|++ .+++|||+++++|+++++.|+++.+.++++|+++.++. .+++......|
T Consensus 5 ~i~I~~-~~d~~Y~~~~~v~i~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~ 82 (276)
T 3tzt_A 5 ADALLL-TLDENYIPQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATD-DLFSFAKVTDR 82 (276)
T ss_dssp CEEEEE-ECCGGGHHHHHHHHHHHHHHSTTCCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC-------------
T ss_pred eEEEEE-EeCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCH-HHHhcCccccc
Confidence 399985 4788999999999999999998 58999999999999999999999999999999999973 55665544455
Q ss_pred H-HHHHHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHhcCCCCCeEEEeeccCCCCCCCCcccccchhhhhhcC-CCC
Q 001078 933 I-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLR-GRP 1010 (1162)
Q Consensus 933 ~-~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~Dl~g~~~Aav~d~~~~~~~~g~~~w~~gyw~~~L~-~~~ 1010 (1162)
+ .++|.|||+|.+||++++||||||+|+||++||.|||++|++|+++|||+||... .|..++++..++ ..+
T Consensus 83 ~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~-------~~~~~~~~~~l~~~~~ 155 (276)
T 3tzt_A 83 YPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKT-------DMANNVNRIRLGTDTD 155 (276)
T ss_dssp -CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC---------------------------
T ss_pred cCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccc-------hHHHHHHHhcCCCCCC
Confidence 5 4899999999999988999999999999999999999999999999999998642 133344444443 349
Q ss_pred eeeeeeeeEehHHHHHhcHHHHHHHHHHHhccCCCCCCCCCCChhhhccccCceeecCC-ccccccCCCC----------
Q 001078 1011 YHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQ-EWLWCESWCG---------- 1079 (1162)
Q Consensus 1011 YfNSGV~liNL~~~R~~~~~dkl~~~~~~ls~~~~sl~~~DQDllN~~~~~~~I~~Lp~-~wN~~~~~~~---------- 1079 (1162)
|||||||||||++||+.+++++++++++ .++.++.++|||+||.+|.+ .++.||+ +||++..+..
T Consensus 156 yfNsGV~linl~~~R~~~~~~~~~~~~~---~~~~~~~~~DQd~LN~~f~~-~~~~Lp~~~wN~~~~~~~~~~~~~~~~~ 231 (276)
T 3tzt_A 156 YYNSGLLLINLKRAREEIDPDEIFSFVE---DNHMNLLLPDQDILNAMYGD-RIYPLDDLIYNYDARNYSSYLIRSKKQA 231 (276)
T ss_dssp CEEEEEEEEEHHHHHHHCCHHHHHHHHH---HC--------CHHHHHHHGG-GEEEEEHHHHSEETTCHHHHHHHTTTCC
T ss_pred eEEeeEEEEEHHHHHhhhHHHHHHHHHH---hccccccCCChhHHHHHHhC-CEEECCchheeeecccchhhhccccchh
Confidence 9999999999999999999999999887 45667888999999999996 8999999 9999875421
Q ss_pred --ccccCCCeEEeccCCCCCCChhhHhhhcccccCchhhHHHHHH
Q 001078 1080 --NATKSKAKTIDLCNNPMTKEPKLQGARRIVSEWPDLDSEARQF 1122 (1162)
Q Consensus 1080 --~e~~~~akiI~~~~np~tk~~kl~~a~r~~~~w~~~d~~~~~~ 1122 (1162)
++..+.+++||||+.+ |+|.-....++.+.|+.|-+....+
T Consensus 232 ~~~~~~~~~~iiHy~g~~--KPW~~~~~~~~~~~w~~Y~~~~~~~ 274 (276)
T 3tzt_A 232 DLAWLMDHTVVLHFCGRD--KPWKKNHRNKFTSLYKHYMSLTKRY 274 (276)
T ss_dssp SHHHHHHHCCEEECCSSC--CTTSTTCCSTTHHHHHHHHHHHHHH
T ss_pred hhhhhccCCeEEEECCCC--CCcCCCCCCchHHHHHHHHHHHHHh
Confidence 1123568999999854 7776666678888899886655544
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=100.00 E-value=5.3e-35 Score=331.56 Aligned_cols=229 Identities=17% Similarity=0.203 Sum_probs=188.6
Q ss_pred eEEEEEecCcchHHHHHHHHHHH-HHcCCCCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCcccccccc-ccc
Q 001078 855 INIFSIASGHLYERFLKIMILSV-LKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKE-KQR 932 (1162)
Q Consensus 855 InIf~vasg~~Y~~~l~v~I~SI-l~nt~~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~-~~r 932 (1162)
|||+.+ +|++|.+++.+||.|| ++|++.+++|||+++++|++.++.|+.+.+.++.+|+++.++ +..+...+. ..+
T Consensus 1 m~I~~~-~d~~Y~~~~~vli~Sl~l~~~~~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~ 78 (311)
T 1g9r_A 1 MDIVFA-ADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVN-PEDFAGFPLNIRH 78 (311)
T ss_dssp CEEEEE-ECGGGHHHHHHHHHHHHHTCTTSCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECC-GGGGTTSCCCCTT
T ss_pred CeEEEE-CCHhHHHHHHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcC-HHHHhcCcccccc
Confidence 689875 6889999999999999 999888999999999999999999999999899999999887 344544332 233
Q ss_pred H-HHHHHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHhcCCCCCeEEEeeccCCCCCCCCcccccchhhhhhcC---C
Q 001078 933 I-IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLR---G 1008 (1162)
Q Consensus 933 ~-~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~Dl~g~~~Aav~d~~~~~~~~g~~~w~~gyw~~~L~---~ 1008 (1162)
+ .++|.|||+|.+|| +++||||||+|+||++||+|||++|++|+++|||+||.... ...|++.++ .
T Consensus 79 ~s~~~y~Rl~l~~ll~-~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~~~~---------~~~~~~~~~~~~~ 148 (311)
T 1g9r_A 79 ISITTYARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVER---------QEGYKQKIGMADG 148 (311)
T ss_dssp CCGGGGGGGGHHHHCC-SCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHT---------STTHHHHTTCCTT
T ss_pred CCHHHHHHHHHHHHhh-hcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEEeccchhh---------hHHHHHhcCCCCC
Confidence 3 48999999999998 79999999999999999999999999999999999984210 122444443 4
Q ss_pred CCeeeeeeeeEehHHHHHhcHHHHHHHHHHHhccCCCCCCCCCCChhhhccccCceeecCCccccccCC-------CC--
Q 001078 1009 RPYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPIFSLPQEWLWCESW-------CG-- 1079 (1162)
Q Consensus 1009 ~~YfNSGV~liNL~~~R~~~~~dkl~~~~~~ls~~~~sl~~~DQDllN~~~~~~~I~~Lp~~wN~~~~~-------~~-- 1079 (1162)
.+||||||||||+++||+.++++++++++++ ++.++.+.|||+||.+|.+ .+..||++||++.+. ..
T Consensus 149 ~~yfNsGv~linl~~~r~~~~~~~~~~~~~~---~~~~~~~~DQd~lN~~f~~-~~~~Lp~~wN~~~~~~~~~~~~~~~~ 224 (311)
T 1g9r_A 149 EYYFNAGVLLINLKKWRRHDIFKMSSEWVEQ---YKDVMQYQDQDILNGLFKG-GVCYANSRFNFMPTNYAFMANWFASR 224 (311)
T ss_dssp SCCEEEEEEEECHHHHTTSCHHHHHHHHHHH---HTTTCSSHHHHHHHHHHTT-SEEEECGGGSBCHHHHHTCC----CS
T ss_pred CceEeeeeeeeeHHHHHhcchHHHHHHHHHh---ccCcCccCCcCHHHHHHcC-CEEEcChhhccCcchhhHHhhhcccc
Confidence 6899999999999999999999999999874 3556788999999999985 899999999998532 21
Q ss_pred ---------ccccCCCeEEeccCCCCCCChh
Q 001078 1080 ---------NATKSKAKTIDLCNNPMTKEPK 1101 (1162)
Q Consensus 1080 ---------~e~~~~akiI~~~~np~tk~~k 1101 (1162)
.+....+++||||+. .|+|.
T Consensus 225 ~~~~~~~~~~~~~~~~~iiHy~g~--~KPW~ 253 (311)
T 1g9r_A 225 HTDPLYRDRTNTVMPVAVSHYCGP--AKPWH 253 (311)
T ss_dssp CCCHHHHHHHSCCSSCSEEECCSS--CCTTS
T ss_pred cchhhhhHHhhccCCCEEEEeCCc--CCCCC
Confidence 112357899999984 35554
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=99.84 E-value=5e-21 Score=218.80 Aligned_cols=229 Identities=14% Similarity=0.123 Sum_probs=157.3
Q ss_pred eeEEEEEecCcchHHHHHHHHHHHHHcCCC-CeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCcccc-ccc--c
Q 001078 854 TINIFSIASGHLYERFLKIMILSVLKNTCR-PVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLH-KQK--E 929 (1162)
Q Consensus 854 ~InIf~vasg~~Y~~~l~v~I~SIl~nt~~-~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~-~~~--~ 929 (1162)
..+|.. ++|.+|..++.+++.||++|++. ++.| +++++++++.++.|..+ +..+..+.+- +.... ... .
T Consensus 4 ~a~vt~-~~d~~Yl~~a~vl~~SL~~~~s~~~l~v-lv~~~is~~~~~~L~~~----~~~v~~v~~l-~~~~~~~~~~~~ 76 (333)
T 1ll2_A 4 QAFVTL-TTNDAYAKGALVLGSSLKQHRTSRRLAV-LTTPQVSDTMRKALEIV----FDEVITVDIL-DSGDSAHLTLMK 76 (333)
T ss_dssp EEEEEE-ESSHHHHHHHHHHHHHHHHTTCCSEEEE-EECTTSCHHHHHHHHHH----CSEEEECCTT-STTSTTHHHHHH
T ss_pred eEEEEE-EeCHHHHHHHHHHHHHHHHhCCCCCEEE-EEcCCCCHHHHHHHHHh----CCEEEEEeec-CCcchhhccccc
Confidence 367764 47889999999999999998753 4444 45678999988777765 4455544431 11010 000 1
Q ss_pred cccHHHHHHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHhcCCCCCeEEEeeccCCCCCCCCcccccchhhhhhcCCC
Q 001078 930 KQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGR 1009 (1162)
Q Consensus 930 ~~r~~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~Dl~g~~~Aav~d~~~~~~~~g~~~w~~gyw~~~L~~~ 1009 (1162)
+.+...+|.||+++.+ + +++||||||+|++|.+||.+||+++ .+||++++ | | .
T Consensus 77 ~~~~~~t~~Kl~i~~l-~-~ydrvlYLDaD~lv~~di~eLf~~~----~~aAv~d~-------~--------~------~ 129 (333)
T 1ll2_A 77 RPELGVTLTKLHCWSL-T-QYSKCVFMDADTLVLANIDDLFERE----ELSAAPDP-------G--------W------P 129 (333)
T ss_dssp CGGGHHHHHHGGGGGC-T-TCSEEEEECTTEEECSCCGGGGGSC----SSEEEECS-------S--------S------T
T ss_pred ccchHHHHHHHHHhHh-c-CCCeEEEEeCCEEeccCHHHHhCCC----ceeEEecC-------C--------C------C
Confidence 2234589999999996 4 6999999999999999999999987 57888874 2 2 2
Q ss_pred CeeeeeeeeEehHHHHHhcHHHHHHHHHHHhccCCCCCCCCCCChhhhccccCce-----eecCCccccccCC--CC---
Q 001078 1010 PYHISALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTVPI-----FSLPQEWLWCESW--CG--- 1079 (1162)
Q Consensus 1010 ~YfNSGV~liNL~~~R~~~~~dkl~~~~~~ls~~~~sl~~~DQDllN~~~~~~~I-----~~Lp~~wN~~~~~--~~--- 1079 (1162)
.||||||||+|+.. ...+++++++.+ ..++.+.|||+||.+|.+ .+ ..||.+||++... ..
T Consensus 130 ~~fNsGvmlin~~~----~~~~~l~~~~~~----~~~~~~~DQ~~LN~~f~~-~~~~~~~~~Lp~~yN~~~~~~~~~~p~ 200 (333)
T 1ll2_A 130 DCFNSGVFVYQPSV----ETYNQLLHVASE----QGSFDGGDQGLLNTFFNS-WATTDIRKHLPFIYNLSSISIYSYLPA 200 (333)
T ss_dssp TSEEEEEEEECCCH----HHHHHHHHHHHH----TCCTTSSHHHHHHHHTTT-TTTSCGGGBCCGGGSEETTHHHHTHHH
T ss_pred cceeeeEEEEeCCH----HHHHHHHHHHHh----cCCCCCCCHHHHHHHHHh-hcccCccccCCcHHhcccccchhccHH
Confidence 59999999998752 334666766653 245677999999999985 32 6899999998652 11
Q ss_pred -ccccCCCeEEeccCCCCCCChhhHhh---h--------------cccccCc-hhhHHHHHHHHHhc
Q 001078 1080 -NATKSKAKTIDLCNNPMTKEPKLQGA---R--------------RIVSEWP-DLDSEARQFTAKIL 1127 (1162)
Q Consensus 1080 -~e~~~~akiI~~~~np~tk~~kl~~a---~--------------r~~~~w~-~~d~~~~~~~~~~~ 1127 (1162)
......+++|||++.+ |+|....- + .++..|+ .|+..+..++.+..
T Consensus 201 ~~~~~~~~~IiHf~g~~--KPW~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~~~~~~~~~~~~~~~ 265 (333)
T 1ll2_A 201 FKAFGANAKVVHFLGQT--KPWNYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPLLQQFG 265 (333)
T ss_dssp HHHHGGGCSEEECCSSC--CGGGSCEETTTTEEC--------CCHHHHHHHHHHHHHTHHHHHTC--
T ss_pred HHhhcCCCEEEEECCCC--CCCCCCCCCCccccccccccccccHHHHHHHHHHHHHhhcccccchhh
Confidence 1224679999999833 55554311 1 2334455 66877777766553
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=99.81 E-value=6.7e-20 Score=202.50 Aligned_cols=203 Identities=16% Similarity=0.166 Sum_probs=146.3
Q ss_pred EEEecCcchHHHHHHHHHHHHHcCCCCeEEEEE-eCCCChhHHHHHHHHHHhcCcEEEEEEe-cCCc--ccccccccccH
Q 001078 858 FSIASGHLYERFLKIMILSVLKNTCRPVKFWFI-KNYLSPQFKDVIPHMAQEYGFEYELITY-KWPT--WLHKQKEKQRI 933 (1162)
Q Consensus 858 f~vasg~~Y~~~l~v~I~SIl~nt~~~v~f~Il-~~~lS~~~k~~L~~l~~~~~~~i~fv~~-~wp~--~L~~~~~~~r~ 933 (1162)
++.++|.+|..++.+++.||.+|++ ..+++++ +++++++.++.|+.+ +..+..+.. +.+. .+.. ..+.+.
T Consensus 8 vTl~td~~Yl~ga~vL~~SL~~~~s-~~~lvvLvt~~vs~~~~~~L~~~----~~~vi~V~~l~~~~~~~~~~-~~rp~~ 81 (263)
T 3u2u_A 8 VTLTTNDAYAKGALVLGSSLKQHRT-TRRLVVLATPQVSDSMRKVLETV----FDEVIMVDVLDSGDSAHLTL-MKRPEL 81 (263)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTC-CSEEEEEECTTSCHHHHHHHHHH----SSEEEECCCCCCCCHHHHHH-TTCTTG
T ss_pred EEEEECHHHHHHHHHHHHHHHHhCC-CCCEEEEecCCCCHHHHHHHHHc----CCeEEEeeecCCcchhhhhh-hcCcch
Confidence 3556788999999999999999876 3555555 578999888777654 555544432 2111 0110 111233
Q ss_pred HHHHHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHhcCCCCCeEEEeeccCCCCCCCCcccccchhhhhhcCCCCeee
Q 001078 934 IWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHLRGRPYHI 1013 (1162)
Q Consensus 934 ~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~Dl~g~~~Aav~d~~~~~~~~g~~~w~~gyw~~~L~~~~YfN 1013 (1162)
..+|.||++..+.+ ++||||||+|++|.+||.+||+++ .+||++|. | | ..|||
T Consensus 82 ~~~~~kl~~~~l~~--~~~vlylD~D~~v~~~~~~Lf~~~----~~aA~~d~-------~--------~------~~~fN 134 (263)
T 3u2u_A 82 GVTLTKLHCWSLTQ--YSKCVFMDADTLVLANIDDLFDRE----ELSAAPDP-------G--------W------PDCFN 134 (263)
T ss_dssp GGGGGGGGGGGCTT--CSEEEEECTTEEECSCCGGGGGSC----SSEEEECT-------T--------S------TTSEE
T ss_pred hHHhHHHHhccccC--cceEEEEcCCEeeccCHHHHhCCC----cceEeccC-------C--------C------Ccccc
Confidence 46899999999874 899999999999999999999987 57888763 2 2 25999
Q ss_pred eeeeeEehHHHHHhcHHHHHHHHHHHhccCCCCCCCCCCChhhhccccC----ceeecCCccccccC--CC-Cc---ccc
Q 001078 1014 SALYVVDLKRFRETAAGDNLRVFYETLSKDPNSLANLDQDLPNYAQHTV----PIFSLPQEWLWCES--WC-GN---ATK 1083 (1162)
Q Consensus 1014 SGV~liNL~~~R~~~~~dkl~~~~~~ls~~~~sl~~~DQDllN~~~~~~----~I~~Lp~~wN~~~~--~~-~~---e~~ 1083 (1162)
|||||||++ ....+++++.+++ ..++.++|||+||.+|.+. .++.||.+||++.+ |. .. +..
T Consensus 135 sGv~li~p~----~~~~~~l~~~~~~----~~~~~~~DQd~LN~~f~~w~~~~~~~~Lp~~yN~~~~~~y~~~~~~~~~~ 206 (263)
T 3u2u_A 135 SGVFVYQPS----VETYNQLLHLASE----QGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVFG 206 (263)
T ss_dssp EEEEEECCC----HHHHHHHHHHHHH----HCCTTSSHHHHHHHHTTTTTTSCGGGBCCGGGSEEHHHHHSSHHHHHHHG
T ss_pred CeEEEEccc----HHHHHHHHHHHHh----cCCCCcccHHHHHHHhccccccCeeEeCCcccccccchhccccHHHHhhc
Confidence 999999985 4667778877763 2356779999999999852 57889999999753 11 11 124
Q ss_pred CCCeEEeccCCCCCCChhhH
Q 001078 1084 SKAKTIDLCNNPMTKEPKLQ 1103 (1162)
Q Consensus 1084 ~~akiI~~~~np~tk~~kl~ 1103 (1162)
..+++||||+.+ |+|...
T Consensus 207 ~~~~IIHf~g~~--KPW~~~ 224 (263)
T 3u2u_A 207 ASAKVVHFLGRV--KPWNYT 224 (263)
T ss_dssp GGCSEEECCSSS--CGGGSE
T ss_pred CCeEEEEECCCC--cCCCCC
Confidence 678999999843 666543
No 5
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=96.39 E-value=0.051 Score=59.69 Aligned_cols=224 Identities=16% Similarity=0.104 Sum_probs=125.6
Q ss_pred CCeeEEEEEecCcchH-HHHHHHHHHHHHc--CCCCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCccccccc
Q 001078 852 GKTINIFSIASGHLYE-RFLKIMILSVLKN--TCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQK 928 (1162)
Q Consensus 852 ~~~InIf~vasg~~Y~-~~l~v~I~SIl~n--t~~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~ 928 (1162)
+-+|-|.++|.| .|. .++.--+.|.=+| ...++++||++|.-+. ++.+.-..+-++..+.+. ..-+-|-
T Consensus 47 n~tIGl~vfa~G-kY~~~fl~~Fl~SAEk~Fm~g~~v~YYVFTD~~~~-----~p~v~l~~~r~~~V~~i~--~~~~W~d 118 (289)
T 1o7q_A 47 KITVGLTVFAVG-RYIEHYLEEFLTSANKHFMVGHPVIFYIMVDDVSR-----MPLIELGPLRSFKVFKIK--PEKRWQD 118 (289)
T ss_dssp TCCEEEEEEECT-THHHHHHHHHHHHHHHHBSTTSCEEEEEEESCGGG-----CCCCCCCTTEEEEEEECC--CCSSHHH
T ss_pred CCeEEEEEEEec-ccHHHHHHHHHHHHHHhccCCCeEEEEEEeCChhh-----CCccccCCCCeEEEEEec--cccCCch
Confidence 556888888887 688 9999999999988 4468999999975321 111111123345555542 1000010
Q ss_pred ccccHHHHHHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHhcCCCCCeEEEeeccCCCCCCCCcccccchhhhhhc--
Q 001078 929 EKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHL-- 1006 (1162)
Q Consensus 929 ~~~r~~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~Dl~g~~~Aav~d~~~~~~~~g~~~w~~gyw~~~L-- 1006 (1162)
.+-++..+........++ .++|-+.++|+|+++.+++..= .| |..+|...-..-.+....|.|-+..--...+
T Consensus 119 ~sm~Rm~~i~~~~~~~~~-~evDYLf~~dvd~~F~~~vG~E---~L-g~lv~~lHp~~y~~~~~~fpYERrp~S~AyIp~ 193 (289)
T 1o7q_A 119 ISMMRMKTIGEHIVAHIQ-HEVDFLFCMDVDQVFQDKFGVE---TL-GESVAQLQAWWYKADPNDFTYERRKESAAYIPF 193 (289)
T ss_dssp HHHHHHHHHHHHHHHTHH-HHCSEEEEECSSEEECSCBCGG---GC-SSEEEEECTTTTTSCGGGSCCCCCTTSTTCCCT
T ss_pred hHHHHHHHHHHHHHHHHh-hcCCEEEEeeCCcEeeccCCHH---HH-HHHHHccCHHHhCCCCCCCCCCCCcCceeeecC
Confidence 111112222333335556 4699999999999999887531 23 3455554322111111222222211111123
Q ss_pred -CCCCeeeeeeeeEehHHHHHhcHHHHHHHHHH-HhccCCCCCCCCCCChhhhcc-ccCceeecCCccccccCCCCcccc
Q 001078 1007 -RGRPYHISALYVVDLKRFRETAAGDNLRVFYE-TLSKDPNSLANLDQDLPNYAQ-HTVPIFSLPQEWLWCESWCGNATK 1083 (1162)
Q Consensus 1007 -~~~~YfNSGV~liNL~~~R~~~~~dkl~~~~~-~ls~~~~sl~~~DQDllN~~~-~~~~I~~Lp~~wN~~~~~~~~e~~ 1083 (1162)
.+..|+-+|++==-..+..+. .+.|...+. .+..+... .+.|..-||..+ ...|.+.|+++|+|.+.+..+...
T Consensus 194 ~eGdfYY~Ga~fGGt~~~vl~l--~~~c~~~i~~D~~n~I~A-~wHDESHLNKYf~~~KPtKvLSPEY~wd~~~~~p~~i 270 (289)
T 1o7q_A 194 GEGDFYYHAAIFGGTPTQVLNI--TQECFKGILKDKKNDIEA-QWHDESHLNKYFLLNKPTKILSPEYCWDYHIGLPADI 270 (289)
T ss_dssp TCCSCCEEEEEEEECHHHHHHH--HHHHHHHHHHHHHTTCCC-TTTHHHHHHHHHHHSCCSEEECGGGSBCGGGCCCTTC
T ss_pred CCCCEEEEceeeCCcHHHHHHH--HHHHHHHHHHHHhCCeEE-EecchhhhhHHHhhcCCCEEECHHHCCCcccCCCccc
Confidence 256898888885444444432 233333222 22233333 467999999985 335788899999999988655555
Q ss_pred CCCeEEec
Q 001078 1084 SKAKTIDL 1091 (1162)
Q Consensus 1084 ~~akiI~~ 1091 (1162)
+..++++.
T Consensus 271 k~~r~~~~ 278 (289)
T 1o7q_A 271 KLVKMSWQ 278 (289)
T ss_dssp CSCSEEEC
T ss_pred cEEEEEEe
Confidence 66666544
No 6
>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ...
Probab=95.03 E-value=0.17 Score=55.87 Aligned_cols=225 Identities=14% Similarity=0.141 Sum_probs=119.2
Q ss_pred cCCeeEEEEEecCcchHHHHHHHHHHHHHcC--CCCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCccccccc
Q 001078 851 HGKTINIFSIASGHLYERFLKIMILSVLKNT--CRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQK 928 (1162)
Q Consensus 851 ~~~~InIf~vasg~~Y~~~l~v~I~SIl~nt--~~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~ 928 (1162)
.+-+|=+.++|.| .|..++.--+.|.=+|= ..++++||+++..+. ++.+.-..+-.+..+.+. ...+-|-
T Consensus 56 ~n~tIGl~vfA~G-kY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~~~~-----vP~v~l~~~r~~~V~~v~--~~~~Wqd 127 (298)
T 3ioh_A 56 QNTTIGLTVFAIK-KYVAFLKLFLETAEKHFMVGHRVHYYVFTDQPAA-----VPRVTLGTGRQLSVLEVR--AYKRWQD 127 (298)
T ss_dssp TTCEEEEEEEECG-GGGGGHHHHHHHHHHHBSTTSEEEEEEEESCGGG-----SCCCCCCTTEEEEEEECC--CCSSHHH
T ss_pred hCCcEEEEEEEeC-cHHHHHHHHHHhHHHhccCCceEEEEEEeCChhh-----CCccccCCCCeEEEEEec--cccCCcc
Confidence 4667888888877 68889999999999884 458999999985331 222222224455555552 1111111
Q ss_pred ccccHHHHHHHHhhcccCCCCCCeEEEEeCCeeecCCchHHHhcCCCCCeEEEeeccCCCCCCCCcccccchhhhhhc--
Q 001078 929 EKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGELYDMDIKGRPLAYTPFCDNNKDMDGYRFWRQGFWKDHL-- 1006 (1162)
Q Consensus 929 ~~~r~~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~eL~~~Dl~g~~~Aav~d~~~~~~~~g~~~w~~gyw~~~L-- 1006 (1162)
.+-+...+...+-...++ .++|-+.++|+|+++.+++..= .| |..+|...-..-.+....|.|-+..--...+
T Consensus 128 ~sm~Rm~~i~~~~~~~~~-~EvDyLfc~dvd~~F~~~vG~E---~L-g~lva~lHp~~y~~~~~~FpYERrp~S~AyIp~ 202 (298)
T 3ioh_A 128 VSMRRMEMISDFCERRFL-SEVDYLVCVDVDMEFRDHVGVE---IL-TPLFGTLHPGFYGSSREAFTYERRPQSQAYIPK 202 (298)
T ss_dssp HHHHHHHHHHHHHHHTHH-HHCSEEEEEESSEEECSCBCGG---GC-SSEEEEBCTTTTTSCGGGSCCCCCTTSTTCCCT
T ss_pred ccHHHHHHHHHHHHHHHh-hcCCEEEEecCCCeeccCccHH---Hh-HhhHhhcChhhhcCCcccCcccCCccccccccC
Confidence 111112222222233444 4799999999999999876521 12 2234433211111111122222211111122
Q ss_pred -CCCCeeeeeeeeEehHHHHHhcHHHHHHHHH-HHhccCCCCCCCCCCChhhhccc-cCceeecCCccccccC-CCCccc
Q 001078 1007 -RGRPYHISALYVVDLKRFRETAAGDNLRVFY-ETLSKDPNSLANLDQDLPNYAQH-TVPIFSLPQEWLWCES-WCGNAT 1082 (1162)
Q Consensus 1007 -~~~~YfNSGV~liNL~~~R~~~~~dkl~~~~-~~ls~~~~sl~~~DQDllN~~~~-~~~I~~Lp~~wN~~~~-~~~~e~ 1082 (1162)
.|..|+-+|++==-..+..+. .+.|...+ +....+... .+.|..-||..+. ..|.+.|+++|+|.+. ......
T Consensus 203 ~eGdfYY~ga~fGGt~~~vl~L--t~~C~~~i~~D~~n~IeA-~WhDESHLNKYfl~hKPtKvLSPEY~Wd~~~~~~~~~ 279 (298)
T 3ioh_A 203 DEGDFYYGGAFFGGSVQEVQRL--TRACHQAMMVDQANGIEA-VWHDESHLNKYLLRHKPTKVLSPEYLWDQQLLGWPAV 279 (298)
T ss_dssp TCCSCCBCTTEEEEEHHHHHHH--HHHHHHHHHHHHHTTCCC-TTTHHHHHHHHHHHSCCSEEECGGGSBCHHHHCCCTT
T ss_pred CCCCeEEeeeecCCcHHHHHHH--HHHHHHHHHHHHhCCceE-eccchhhhhhhhhhcCCCceeCHHHcCCccccCCCcc
Confidence 256888777773222222221 22222222 122233333 4679999998874 3578999999999875 222334
Q ss_pred cCCCeEEec
Q 001078 1083 KSKAKTIDL 1091 (1162)
Q Consensus 1083 ~~~akiI~~ 1091 (1162)
.+..++++.
T Consensus 280 i~~~r~~~~ 288 (298)
T 3ioh_A 280 LRKLRFTAV 288 (298)
T ss_dssp CSCCCEEEC
T ss_pred eeEEEEEec
Confidence 555666654
No 7
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=93.68 E-value=2.6 Score=42.15 Aligned_cols=158 Identities=9% Similarity=0.040 Sum_probs=80.2
Q ss_pred ceEEEEEeeCCChhhHHHHHHHHHHHhcCCCceEEEEEecCCCCCCCchhHHHHHHHHHhhcccchhhHHHHHHHHhhhh
Q 001078 315 PVTHLLAVDVTSKKGMKLLHEGIRFLIGGSNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQLCSFY 394 (1162)
Q Consensus 315 ~~t~wvv~D~~~~~g~~l~~~al~~l~~~~~~~Rv~~v~n~~~~~~~~~~~~~~~i~aa~~~~~~~~~~~~~l~~l~~~~ 394 (1162)
+.|+....|+.++-.+++-...-+.+++-...+++.++|-|-..... .....++. ++....... ..+...+....
T Consensus 22 ~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~a~a~-~~~~~~~~~---~~~~~~~~~~~ 96 (184)
T 4dvc_A 22 SPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNM-GQAMSKAY-ATMIALEVE---DKMVPVMFNRI 96 (184)
T ss_dssp SCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGG-HHHHHHHH-HHHHHHTCH---HHHHHHHHHHH
T ss_pred CCEEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEEEecCCCCCch-HHHHHHHH-HHHHHcCcH---HHHHHHHHHHH
Confidence 45777888999999987764444444444457888887766422100 11111111 111111111 11111111110
Q ss_pred hhhhhhcccccccchHHHHHHHHHHHHhcCCChHhHhhccCccchhhHHHHHHHHHHHHHHHhCCCCCCcEEEEcCEEec
Q 001078 395 ERTYLLASSATADSTQAFIDKVCEFAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNGRVTF 474 (1162)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~NGR~i~ 474 (1162)
.... ..... .+.+.+.++..+++.+.+...+.+....... .. ..-..+.+|+. |.+.++||||++.
T Consensus 97 ~~~~------~~~~~---~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v---~~-~~~~a~~~gv~-gTPtfiINGky~v 162 (184)
T 4dvc_A 97 HTLR------KPPKD---EQELRQIFLDEGIDAAKFDAAYNGFAVDSMV---HR-FDKQFQDSGLT-GVPAVVVNNRYLV 162 (184)
T ss_dssp HTSC------CCCSS---HHHHHHHHHTTTCCHHHHHHHHTSHHHHHHH---HH-HHHHHHHHTCC-SSSEEEETTTEEE
T ss_pred HHHh------hccch---HHHHHHHHHHhCCCHHHHHHHHhCHHHHHHH---HH-HHHHHHHcCCC-cCCEEEECCEEee
Confidence 0000 00001 1334556777889998888777553322222 22 22345667986 8999999999763
Q ss_pred CCCCCCCChhhHHHHHHH
Q 001078 475 PIDESTFLSHDLSLLESV 492 (1162)
Q Consensus 475 ~~~~~~~~~~d~~~l~~~ 492 (1162)
-. ...-+.++|..++.+
T Consensus 163 ~~-~~~~s~e~~~~~i~~ 179 (184)
T 4dvc_A 163 QG-QSAKSLDEYFDLVNY 179 (184)
T ss_dssp CG-GGCSSHHHHHHHHHH
T ss_pred CC-cCCCCHHHHHHHHHH
Confidence 22 123456676666654
No 8
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=92.57 E-value=2 Score=43.59 Aligned_cols=141 Identities=11% Similarity=0.063 Sum_probs=85.4
Q ss_pred ccEEEEEcCCCcchHHHHHHHH-HHHhcc---cceEEEEEeeecccccchhccCCCCCCCCccCCCCCCCchHHHHHHHH
Q 001078 50 FHAVYVLDPATVCGLEVIDMIM-SLYENH---FPLRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLF 125 (1162)
Q Consensus 50 ~nlV~vvDps~~~~l~~l~~i~-~~~~~~---iPvR~GlVp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~s~~~ar~f 125 (1162)
..++++.|+..+-...+-..+. .+.++- --+|+=+.++.-. + ..|...++++
T Consensus 13 ~~i~~f~D~~Cp~C~~~~~~l~~~l~~~~~~~~~v~~~~~~~p~~---------~---------------~~s~~aa~a~ 68 (186)
T 3bci_A 13 PLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFL---------G---------------KDSIVGSRAS 68 (186)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSSEEEEEECCCS---------C---------------TTHHHHHHHH
T ss_pred eEEEEEECCCChhHHHHHHHHHHHHHHHhccCCeEEEEEEecCcC---------C---------------cchHHHHHHH
Confidence 4689999999999988766653 332221 1255555554311 0 2356677777
Q ss_pred HHHHHhhChHHHHHHHHHHHHhhhccCCCCCCchhhhhhHHhHhHhhccCCCCCCChhh---hhhhh--cccchhhhHHH
Q 001078 126 LFIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDM---LLKLE--KEKTFMDQSQE 200 (1162)
Q Consensus 126 ~~i~~~~g~~~Al~FL~~~~~~~~~~~~~~~~~~~~~~~v~~af~~~~~~~~~~~~~~~---~~~l~--~~~~~d~~~~~ 200 (1162)
..+.+. |+.....|...++..... . ..+..+.+.+.... +. . .-..+. +...+ .+.++...+..
T Consensus 69 ~~a~~~-~~~~~~~~~~~lf~~~~~-~---~~~~~~~~~l~~~a-~~----~-Gld~~~~~~~~~~~~~~~~~~~~~v~~ 137 (186)
T 3bci_A 69 HAVLMY-APKSFLDFQKQLFAAQQD-E---NKEWLTKELLDKHI-KQ----L-HLDKETENKIIKDYKTKDSKSWKAAEK 137 (186)
T ss_dssp HHHHHH-CGGGHHHHHHHHHHTCCC-T---TSCCCCHHHHHHHH-HT----T-CCCHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHh-CHHHHHHHHHHHHhcCcc-c---CCCCCCHHHHHHHH-HH----c-CCCHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 766543 555667888877754321 0 01122333333332 21 1 122334 55666 67778888888
Q ss_pred HHHHHHHhCCCcCCceeeEeceeccC
Q 001078 201 SSMFVFKLGLTKLKCCLLMNGLVSES 226 (1162)
Q Consensus 201 ~~~f~~Rlgl~~~~p~vlvNGv~~~~ 226 (1162)
..+..+++|+.+ .|.++|||..+..
T Consensus 138 ~~~~a~~~gv~G-tPt~vvnG~~~~G 162 (186)
T 3bci_A 138 DKKIAKDNHIKT-TPTAFINGEKVED 162 (186)
T ss_dssp HHHHHHHTTCCS-SSEEEETTEECSC
T ss_pred HHHHHHHcCCCC-CCeEEECCEEcCC
Confidence 888999999955 6999999998863
No 9
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=92.44 E-value=6.1 Score=40.59 Aligned_cols=142 Identities=4% Similarity=-0.074 Sum_probs=86.5
Q ss_pred ccccEEEEEcCCCcchHHHHHHHHHHHhcccc--eEEEEEeeecccccchhccCCCCCCCCccCCCCCCCchHHHHHHHH
Q 001078 48 NLFHAVYVLDPATVCGLEVIDMIMSLYENHFP--LRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLF 125 (1162)
Q Consensus 48 Nl~nlV~vvDps~~~~l~~l~~i~~~~~~~iP--vR~GlVp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~s~~~ar~f 125 (1162)
+=..+|.+.|+..+....+-..+..+.+. .| ++|--+|+... ..+...++++
T Consensus 24 ~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~-~~~~v~~~~~p~~~~-------------------------~~~~~aa~a~ 77 (193)
T 3hz8_A 24 GKVEVLEFFGYFCPHCAHLEPVLSKHAKS-FKDDMYLRTEHVVWQ-------------------------KEMLTLARLA 77 (193)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHTT-CCTTEEEEEEECCCS-------------------------GGGHHHHHHH
T ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHH-CCCCeEEEEecCCCC-------------------------cccHHHHHHH
Confidence 34579999999999998887777776543 34 66777777533 3345677777
Q ss_pred HHHHHhhChHHHHHHHHHHHHhhhccCCCCCCchhhhhhHHhHhHhhccCCCCCCChhhhhhhhcccchhhhHHHHHHHH
Q 001078 126 LFIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFV 205 (1162)
Q Consensus 126 ~~i~~~~g~~~Al~FL~~~~~~~~~~~~~~~~~~~~~~~v~~af~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~f~ 205 (1162)
+... ..|......|...++...-... .+..+.+.+.... +.+ ..-..+.+...+.+.++...++...+..
T Consensus 78 ~aa~-~~g~~~~~~~~~~lf~a~~~~~----~~~~~~~~l~~~a-~~~----~Gld~~~~~~~~~s~~~~~~v~~~~~~a 147 (193)
T 3hz8_A 78 AAVD-MAAADSKDVANSHIFDAMVNQK----IKLQNPEVLKKWL-GEQ----TAFDGKKVLAAYESPESQARADKMQELT 147 (193)
T ss_dssp HHHH-HHTGGGHHHHHHHHHHHHHTSC----CCTTSHHHHHHHH-HHC----TTTTHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred HHHH-HcCchhHHhHHHHHHHHHHHhC----cCCCCHHHHHHHH-HHc----cCCCHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 6654 4454332123333322111100 1112333333333 211 0223345677777888888888899999
Q ss_pred HHhCCCcCCceeeEeceeccC
Q 001078 206 FKLGLTKLKCCLLMNGLVSES 226 (1162)
Q Consensus 206 ~Rlgl~~~~p~vlvNGv~~~~ 226 (1162)
+++|+.+ .|.++|||..+..
T Consensus 148 ~~~gv~g-tPt~vvng~~~~~ 167 (193)
T 3hz8_A 148 ETFQIDG-VPTVIVGGKYKVE 167 (193)
T ss_dssp HHTTCCS-SSEEEETTTEEEC
T ss_pred HHhCCCc-CCEEEECCEEEec
Confidence 9999955 6999999998764
No 10
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}
Probab=92.41 E-value=4.6 Score=41.42 Aligned_cols=165 Identities=12% Similarity=0.044 Sum_probs=88.8
Q ss_pred CceEEEEEeeCCChhhHHHHHHHHHHHhcC-CCceEEEEEecCCCCCCCchhHHHHHHHHHhhcccchhhHHHHHHHHhh
Q 001078 314 KPVTHLLAVDVTSKKGMKLLHEGIRFLIGG-SNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQLCS 392 (1162)
Q Consensus 314 ~~~t~wvv~D~~~~~g~~l~~~al~~l~~~-~~~~Rv~~v~n~~~~~~~~~~~~~~~i~aa~~~~~~~~~~~~~l~~l~~ 392 (1162)
.++|+.+..|+.+|-..++.....+.+++. ..++|+.+.+-|-.- ...+...+++..++........+...|...|.+
T Consensus 14 a~vtiv~f~D~~Cp~C~~~~~~~~~~l~~~~~g~v~~v~r~~p~~~-h~~s~~aaraa~aa~~~~~~~~~f~~~~~aLf~ 92 (182)
T 3gn3_A 14 GPRLFEVFLEPTCPFSVKAFFKLDDLLAQAGEDNVTVRIRLQSQPW-HMFSGVIVRCILAAATLEGGKESAKAVMTAVAS 92 (182)
T ss_dssp CSEEEEEEECTTCHHHHHHHTTHHHHHHHHCTTTEEEEEEECCCTT-STTHHHHHHHHHHHTTSTTHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHHHHHHhCCCCEEEEEEEcCCCC-CccHHHHHHHHHHHHHhccChHHHHHHHHHHHh
Confidence 469999999999999988755444444432 458999998887521 112234455555543321111355667666665
Q ss_pred hhhhhhhhc-ccccccchHHHHHHHHHHHHhcCCChHhHhhccCccchhhHHHHHHHHHHHHHHHhCCCCCCcEEEEcCE
Q 001078 393 FYERTYLLA-SSATADSTQAFIDKVCEFAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNGR 471 (1162)
Q Consensus 393 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~NGR 471 (1162)
....-.... ......++. ..+.+.++++..|++.+.+ +.+ ..+...+.... -..+.+|+. |.+++++||+
T Consensus 93 ~q~~~~~~~~~~~~~~~~~-~~~~l~~~a~~~Gld~~~~---l~~---~~~~~~v~~~~-~~a~~~GV~-gtPtf~ing~ 163 (182)
T 3gn3_A 93 HREEFEFEHHAGGPNLDAT-PNDIIARIERYSGLALAEA---FAN---PELEHAVKWHT-KYARQNGIH-VSPTFMINGL 163 (182)
T ss_dssp TGGGGSCBTTTBSGGGGCC-HHHHHHHHHHHHTCCCHHH---HHC---GGGHHHHHHHH-HHHHHHTCC-SSSEEEETTE
T ss_pred cCcccccccccccccCCCC-HHHHHHHHHHHhCCCHHHH---hcC---hHHHHHHHHHH-HHHHHCCCC-ccCEEEECCE
Confidence 321100000 000000111 1122334555567877665 222 22222222222 234567886 8999999999
Q ss_pred Eec-CCCCCCCChhhHHHHH
Q 001078 472 VTF-PIDESTFLSHDLSLLE 490 (1162)
Q Consensus 472 ~i~-~~~~~~~~~~d~~~l~ 490 (1162)
.++ +. ...+.++|...+
T Consensus 164 ~~~~~s--~~~~~e~w~~~l 181 (182)
T 3gn3_A 164 VQPGMS--SGDPVSKWVSDI 181 (182)
T ss_dssp ECTTCC--TTSCHHHHHHHH
T ss_pred EccCCC--CCCCHHHHHHHh
Confidence 995 53 457788887654
No 11
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=92.20 E-value=3.3 Score=43.11 Aligned_cols=142 Identities=12% Similarity=0.059 Sum_probs=87.7
Q ss_pred ccEEEEEcCCCcchHHHHHHHHHHHhccc----ceEEEEEeeecccccchhccCCCCCCCCccCCCCCCCchHHHHHHHH
Q 001078 50 FHAVYVLDPATVCGLEVIDMIMSLYENHF----PLRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLF 125 (1162)
Q Consensus 50 ~nlV~vvDps~~~~l~~l~~i~~~~~~~i----PvR~GlVp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~s~~~ar~f 125 (1162)
..+|.+.|+..+...++-..+..-+...+ -+||=+.++.-. ...|...+++.
T Consensus 31 vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p~~------------------------~~~s~~Aa~aa 86 (202)
T 3gha_A 31 VTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVMFH------------------------GKGSRLAALAS 86 (202)
T ss_dssp EEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEECCCS------------------------HHHHHHHHHHH
T ss_pred EEEEEEECCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEecCcc------------------------chhHHHHHHHH
Confidence 47899999999999886555432222222 367766666422 02345556666
Q ss_pred HHHHHhhChHHHHHHHHHHHHhhhccCCCCCCchhhhhhHHhHhHhhccCCCCCCChhhhhhhhcccchhhhHHHHHHHH
Q 001078 126 LFIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFV 205 (1162)
Q Consensus 126 ~~i~~~~g~~~Al~FL~~~~~~~~~~~~~~~~~~~~~~~v~~af~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~f~ 205 (1162)
..+... +......|...++...... ..+..+.+.+.....+.+ .-..+.+...+.+.++...+....+..
T Consensus 87 ~a~~~~-~~~~f~~~~~aLf~~~~~~----~~~~~~~~~L~~~a~~~~-----Gld~~~~~~~l~s~~~~~~v~~~~~~a 156 (202)
T 3gha_A 87 EEVWKE-DPDSFWDFHEKLFEKQPDT----EQEWVTPGLLGDLAKSTT-----KIKPETLKENLDKETFASQVEKDSDLN 156 (202)
T ss_dssp HHHHHH-CGGGHHHHHHHHHHHCCSS----SSCCCCHHHHHHHHHHHS-----SSCHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHhh-CHHHHHHHHHHHHHhCccc----cccccCHHHHHHHHHHhc-----CCCHHHHHHHHhChHHHHHHHHHHHHH
Confidence 555442 4556677777777653221 111233344443331101 223446777778888888888889999
Q ss_pred HHhCCCcCCceeeEeceeccC
Q 001078 206 FKLGLTKLKCCLLMNGLVSES 226 (1162)
Q Consensus 206 ~Rlgl~~~~p~vlvNGv~~~~ 226 (1162)
+++|+.+ .|.++|||..+..
T Consensus 157 ~~~gV~g-tPtfvvnG~~~~G 176 (202)
T 3gha_A 157 QKMNIQA-TPTIYVNDKVIKN 176 (202)
T ss_dssp HHTTCCS-SCEEEETTEECSC
T ss_pred HHcCCCc-CCEEEECCEEecC
Confidence 9999955 6999999999864
No 12
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=91.93 E-value=3.6 Score=42.81 Aligned_cols=163 Identities=11% Similarity=0.058 Sum_probs=90.2
Q ss_pred CceEEEEEeeCCChhhHHHHHHHHHHHhcC---CCceEEEEEecCCCCCCCchhHHHHHHHHHhhcccchhhHHHHHHHH
Q 001078 314 KPVTHLLAVDVTSKKGMKLLHEGIRFLIGG---SNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQL 390 (1162)
Q Consensus 314 ~~~t~wvv~D~~~~~g~~l~~~al~~l~~~---~~~~Rv~~v~n~~~~~~~~~~~~~~~i~aa~~~~~~~~~~~~~l~~l 390 (1162)
.++|+....|+.++-.+++-......+++. ..++|+.+.+-|-... .+..-..+..++. ... .++...|...|
T Consensus 29 a~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p~~~~--~s~~Aa~aa~a~~-~~~-~~~f~~~~~aL 104 (202)
T 3gha_A 29 APVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVMFHGK--GSRLAALASEEVW-KED-PDSFWDFHEKL 104 (202)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEECCCSHH--HHHHHHHHHHHHH-HHC-GGGHHHHHHHH
T ss_pred CCEEEEEEECCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEecCccch--hHHHHHHHHHHHH-hhC-HHHHHHHHHHH
Confidence 469999999999999988765444444321 3579999988775210 0111122222221 111 13444555555
Q ss_pred hhhhhhhhhhcccccccchHHHHHHHHHHHHh-cCCChHhHhhccCccchhhHHHHHHHHHHHHHHHhCCCCCCcEEEEc
Q 001078 391 CSFYERTYLLASSATADSTQAFIDKVCEFAEA-NGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITN 469 (1162)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~N 469 (1162)
....... ...+.+ .+.+.++++. .|++.+.+...+.+-...... .+.. -..+.+|+. |.+.+++|
T Consensus 105 f~~~~~~--------~~~~~~-~~~L~~~a~~~~Gld~~~~~~~l~s~~~~~~v---~~~~-~~a~~~gV~-gtPtfvvn 170 (202)
T 3gha_A 105 FEKQPDT--------EQEWVT-PGLLGDLAKSTTKIKPETLKENLDKETFASQV---EKDS-DLNQKMNIQ-ATPTIYVN 170 (202)
T ss_dssp HHHCCSS--------SSCCCC-HHHHHHHHHHHSSSCHHHHHHHHHHTTTHHHH---HHHH-HHHHHTTCC-SSCEEEET
T ss_pred HHhCccc--------cccccC-HHHHHHHHHHhcCCCHHHHHHHHhChHHHHHH---HHHH-HHHHHcCCC-cCCEEEEC
Confidence 5422110 000000 2345556666 789888887766543222221 2222 234567876 89999999
Q ss_pred CEEecCCCCCCCChhhHHHHHHHHHHhhh
Q 001078 470 GRVTFPIDESTFLSHDLSLLESVEFKHRI 498 (1162)
Q Consensus 470 GR~i~~~~~~~~~~~d~~~l~~~e~~~~~ 498 (1162)
|+++. ...+.++|..++.-...+.+
T Consensus 171 G~~~~----G~~~~e~l~~~i~~~~~~~~ 195 (202)
T 3gha_A 171 DKVIK----NFADYDEIKETIEKELKGKL 195 (202)
T ss_dssp TEECS----CTTCHHHHHHHHHHHHHHC-
T ss_pred CEEec----CCCCHHHHHHHHHHHHHhhh
Confidence 99863 23567888888766655543
No 13
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=91.92 E-value=6.9 Score=39.72 Aligned_cols=139 Identities=10% Similarity=0.032 Sum_probs=86.3
Q ss_pred cccEEEEEcCCCcchHHHHHHHHHHHhcc-cceEEEEEeeecccccchhccCCCCCCCCccCCCCCCCchHHHHHHHHHH
Q 001078 49 LFHAVYVLDPATVCGLEVIDMIMSLYENH-FPLRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLFLF 127 (1162)
Q Consensus 49 l~nlV~vvDps~~~~l~~l~~i~~~~~~~-iPvR~GlVp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~s~~~ar~f~~ 127 (1162)
=..+|.+.|+..+....+-..+..+.+.. -.++|=.+|+.-. ..+...+++++.
T Consensus 26 ~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~-------------------------~~~~~aa~a~~a 80 (192)
T 3h93_A 26 KIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFG-------------------------GIWNVHGQMFLT 80 (192)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECCCS-------------------------THHHHHHHHHHH
T ss_pred CCEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEehhhc-------------------------cchHHHHHHHHH
Confidence 35799999999999998887777765442 2466666666432 345667777766
Q ss_pred HHHhhChHHHHHHHHHHHHhhhccCCCCCCchhhhhhHHhHhHhhccCCCCCCChhhhhhhhcccchhhhHHHHHHHHHH
Q 001078 128 IKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFVFK 207 (1162)
Q Consensus 128 i~~~~g~~~Al~FL~~~~~~~~~~~~~~~~~~~~~~~v~~af~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~f~~R 207 (1162)
... .|. ...|...++...-.. ..+..+.+.+.+.. +. . .-..+.+...+.+..+...++...+...+
T Consensus 81 a~~-~g~--~~~~~~~lf~~~~~~----~~~~~~~~~l~~~a-~~----~-Gld~~~~~~~~~~~~~~~~v~~~~~~a~~ 147 (192)
T 3h93_A 81 LES-MGV--EHDVHNAVFEAIHKE----HKKLATPEEMADFL-AG----K-GVDKEKFLSTYNSFAIKGQMEKAKKLAMA 147 (192)
T ss_dssp HHH-HTC--CHHHHHHHHHHHHTS----CCCCCSHHHHHHHH-HT----T-TCCHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHH-cCC--HHHHHHHHHHHHHHh----CcCCCCHHHHHHHH-HH----c-CCCHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 543 343 234444444321110 01112333343333 21 1 22344667777888888888888889999
Q ss_pred hCCCcCCceeeEeceeccC
Q 001078 208 LGLTKLKCCLLMNGLVSES 226 (1162)
Q Consensus 208 lgl~~~~p~vlvNGv~~~~ 226 (1162)
+|+.+ .|.++|||..+..
T Consensus 148 ~gv~g-tPt~~vng~~~~~ 165 (192)
T 3h93_A 148 YQVTG-VPTMVVNGKYRFD 165 (192)
T ss_dssp HTCCS-SSEEEETTTEEEE
T ss_pred hCCCC-CCeEEECCEEEec
Confidence 99955 6999999998754
No 14
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=90.90 E-value=12 Score=37.81 Aligned_cols=138 Identities=9% Similarity=0.024 Sum_probs=82.7
Q ss_pred ccEEEEEcCCCcchHHHHHHHHHHHhcc-cceEEEEEeeecccccchhccCCCCCCCCccCCCCCCCchHHHHHHHHHHH
Q 001078 50 FHAVYVLDPATVCGLEVIDMIMSLYENH-FPLRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLFLFI 128 (1162)
Q Consensus 50 ~nlV~vvDps~~~~l~~l~~i~~~~~~~-iPvR~GlVp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~s~~~ar~f~~i 128 (1162)
..++.+.|+..+-.......+..+.+.. --++|-.+|+.-. ..+...+++++..
T Consensus 27 v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~-------------------------~~s~~a~~a~~~a 81 (193)
T 2rem_A 27 IEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPAVFG-------------------------GVWDPFARAYLAA 81 (193)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHTSCTTEEEEEEECCCS-------------------------TTHHHHHHHHHHH
T ss_pred eEEEEEECCCChhHhhhhHHHHHHHHhcCCceEEEEeCcccC-------------------------CCcHHHHHHHHHH
Confidence 4689999999999988877777776542 2466666666432 2355667777665
Q ss_pred HHhhChHHHHHHHHHHHHhhhc-cCCCCCCchhhhhhHHhHhHhhccCCCCCCChhhhhhhhcccchhhhHHHHHHHHHH
Q 001078 129 KESHGTQTAFQFLSNVNRLRME-SADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFVFK 207 (1162)
Q Consensus 129 ~~~~g~~~Al~FL~~~~~~~~~-~~~~~~~~~~~~~~v~~af~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~f~~R 207 (1162)
... |.. ..|...++..... +. ...+..+.+.+.... +. . .-..+.+...+.+..+...+....+..++
T Consensus 82 ~~~-~~~--~~~~~~lf~~~~~~~~--~~~~~~~~~~l~~~a-~~----~-Gld~~~~~~~~~~~~~~~~v~~~~~~a~~ 150 (193)
T 2rem_A 82 DVL-GVA--KRSHTAMFEAIHEKGS--VPIQNVGPDELAVFY-AG----Y-GVQPDRFVATFNGPEVEKRFQAARAYALK 150 (193)
T ss_dssp HHT-TCH--HHHHHHHHHHHHTTCC--SCSTTCCHHHHHHHH-HT----T-TCCHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHc-CcH--HHHHHHHHHHHHHhcc--cCcCCCCHHHHHHHH-HH----c-CCCHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 443 432 3344444332111 00 000112233333322 21 1 22334566677777888888888889999
Q ss_pred hCCCcCCceeeEeceec
Q 001078 208 LGLTKLKCCLLMNGLVS 224 (1162)
Q Consensus 208 lgl~~~~p~vlvNGv~~ 224 (1162)
+|+.+ .|.++|||..+
T Consensus 151 ~gv~g-tPt~ving~~~ 166 (193)
T 2rem_A 151 VRPVG-TPTIVVNGRYM 166 (193)
T ss_dssp HCCSS-SSEEEETTTEE
T ss_pred hCCCC-CCeEEECCEEE
Confidence 99955 59999999876
No 15
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=90.49 E-value=4.8 Score=40.13 Aligned_cols=136 Identities=11% Similarity=0.028 Sum_probs=87.4
Q ss_pred cccEEEEEcCCCcchHHHHHHHHHHHhcccceEEEEEeeecccccchhccCCCCCCCCccCCCCCCCchHHHHHHHHHHH
Q 001078 49 LFHAVYVLDPATVCGLEVIDMIMSLYENHFPLRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLFLFI 128 (1162)
Q Consensus 49 l~nlV~vvDps~~~~l~~l~~i~~~~~~~iPvR~GlVp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~s~~~ar~f~~i 128 (1162)
=..+|.+.|+..+....+...+..+.+..=-+|+=++++.-. ...+...+++++.+
T Consensus 23 ~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~v~~~~~~~p~~------------------------~~~s~~aa~~~~~a 78 (175)
T 3gyk_A 23 DVTVVEFFDYNCPYCRRAMAEVQGLVDADPNVRLVYREWPIL------------------------GEGSDFAARAALAA 78 (175)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEECCCS------------------------CHHHHHHHHHHHHG
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHhCCCEEEEEEeCCCC------------------------CCChHHHHHHHHHH
Confidence 367899999999999998888887765321255555554321 13466677877776
Q ss_pred HHhhChHHHHHHHHHHHHhhhccCCCCCCchhhhhhHHhHhHhhccCCCCCCChhhhhhhhcccchhhhHHHHHHHHHHh
Q 001078 129 KESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFVFKL 208 (1162)
Q Consensus 129 ~~~~g~~~Al~FL~~~~~~~~~~~~~~~~~~~~~~~v~~af~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~f~~Rl 208 (1162)
.+. |. ...|...++.... ..+.+.+.... +.+ .-..+.+...+.+.++...+....+..+++
T Consensus 79 ~~~-~~--~~~~~~~lf~~~~---------~~~~~~l~~~a-~~~-----Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~ 140 (175)
T 3gyk_A 79 RQQ-GK--YEAFHWALMGMSG---------KANETGVLRIA-REV-----GLDTEQLQRDMEAPEVTAHIAQSMALAQKL 140 (175)
T ss_dssp GGG-TC--HHHHHHHHHTCSS---------CCSHHHHHHHH-HHT-----TCCHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHH-hH--HHHHHHHHHhcCC---------CCCHHHHHHHH-HHc-----CCCHHHHHHHHhChHHHHHHHHHHHHHHHc
Confidence 554 33 3445555554321 12333333332 221 223446677777888888888888999999
Q ss_pred CCCcCCceeeEeceeccCc
Q 001078 209 GLTKLKCCLLMNGLVSESS 227 (1162)
Q Consensus 209 gl~~~~p~vlvNGv~~~~~ 227 (1162)
|+.+ .|.+++||..+...
T Consensus 141 gv~g-tPt~~i~g~~~~G~ 158 (175)
T 3gyk_A 141 GFNG-TPSFVVEDALVPGF 158 (175)
T ss_dssp TCCS-SSEEEETTEEECSC
T ss_pred CCcc-CCEEEECCEEeeCC
Confidence 9955 69999999988643
No 16
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=90.45 E-value=4.3 Score=41.43 Aligned_cols=140 Identities=6% Similarity=-0.047 Sum_probs=86.5
Q ss_pred ccccEEEEEcCCCcchHHHHHHHHHHHhccc-ceEEEEEeeecccccchhccCCCCCCCCccCCCCCCCchHHHHHHHHH
Q 001078 48 NLFHAVYVLDPATVCGLEVIDMIMSLYENHF-PLRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLFL 126 (1162)
Q Consensus 48 Nl~nlV~vvDps~~~~l~~l~~i~~~~~~~i-PvR~GlVp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~s~~~ar~f~ 126 (1162)
+=..+|.+.|+..+....+...+..+.+..- -++|-.+|+... ..+...+++++
T Consensus 25 ~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~~~-------------------------~~s~~aa~a~~ 79 (195)
T 3hd5_A 25 GKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIAFN-------------------------AGMKPLQQLYY 79 (195)
T ss_dssp TCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECCSS-------------------------GGGHHHHHHHH
T ss_pred CCeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEecccC-------------------------cchHHHHHHHH
Confidence 3457899999999999988877777655422 366666766432 33555666665
Q ss_pred HHHHhhChHHHHHHHHHHHHhhhccCCCCCCchhhhhhHHhHhHhhccCCCCCCChhhhhhhhcccchhhhHHHHHHHHH
Q 001078 127 FIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFVF 206 (1162)
Q Consensus 127 ~i~~~~g~~~Al~FL~~~~~~~~~~~~~~~~~~~~~~~v~~af~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~f~~ 206 (1162)
-.. ..| ...|...++...... ..+..+.+.+.... +.+ ....+.+...+.+.++...++...+..+
T Consensus 80 aa~-~~g---~~~~~~~lf~~~~~~----~~~~~~~~~l~~~a-~~~-----Gld~~~~~~~~~s~~~~~~v~~~~~~a~ 145 (195)
T 3hd5_A 80 TLQ-ALE---RPDLHPKVFTAIHTE----RKRLFDKKAMGEWA-ASQ-----GVDRAKFDSVFDSFSVQTQVQRASQLAE 145 (195)
T ss_dssp HHH-HTT---CTTHHHHHHHHHHTS----CCCCCSHHHHHHHH-HHT-----TCCHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHH-hcC---HHHHHHHHHHHHHHh----ccCCCCHHHHHHHH-HHh-----CCCHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 544 444 334444444322110 01112333333333 221 2234466777778888888999999999
Q ss_pred HhCCCcCCceeeEeceeccCc
Q 001078 207 KLGLTKLKCCLLMNGLVSESS 227 (1162)
Q Consensus 207 Rlgl~~~~p~vlvNGv~~~~~ 227 (1162)
++|+.+ .|.++|||..+...
T Consensus 146 ~~gv~g-tPt~ving~~~~~g 165 (195)
T 3hd5_A 146 AAHIDG-TPAFAVGGRYMTSP 165 (195)
T ss_dssp HTTCCS-SSEEEETTTEEECT
T ss_pred HhCCCc-CceEEECCEEEeCc
Confidence 999955 69999999987653
No 17
>4ayl_A BOGT-metal-independent glycosyltransferase; histo-blood group enzyme; HET: EPE; 1.92A {Bacteroides ovatus} PDB: 4ayj_A*
Probab=90.35 E-value=1.5 Score=47.34 Aligned_cols=214 Identities=14% Similarity=0.167 Sum_probs=107.8
Q ss_pred eeEEEEEecCcchHHHHHHHHHHHHHcC--CCC--eEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEe-cCCccccccc
Q 001078 854 TINIFSIASGHLYERFLKIMILSVLKNT--CRP--VKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITY-KWPTWLHKQK 928 (1162)
Q Consensus 854 ~InIf~vasg~~Y~~~l~v~I~SIl~nt--~~~--v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~-~wp~~L~~~~ 928 (1162)
+|-|.++|.| .|..++.--+.|.=+|= ..+ |++||+++..+. ++... .-.+.+..-.. .||.
T Consensus 2 tIGl~vfA~G-kY~~fl~~Fl~SAek~Fm~g~~~~V~yYVFTD~~~~-----vp~~~-~~~v~~~~~~~~~Wqd------ 68 (246)
T 4ayl_A 2 RIGILYICTG-KYDIFWKDFYLSAERYFMQDQSFIIEYYVFTDSPKL-----YDEEN-NKHIHRIKQKNLGWPD------ 68 (246)
T ss_dssp EEEEEEECCG-GGGGGHHHHHHHHHHHBSCSTTSEEEEEEEESCSCC-----TTTTT-CTTEEEEECCCCCTTH------
T ss_pred eEEEEEEEeC-cHHHHHHHHHHhHHHhccCCCccceEEEEEeCChhh-----CCcCC-CceEEEEeCCcCCCcc------
Confidence 3667777777 68889999999999884 468 999999975431 11111 11222211111 2432
Q ss_pred ccccHHHHHHHHhhcccCCCCCCeEEEEeCCeeecCCchH-HHhcCCC-CCeEEEeeccCCCCCCCCcccccchhhhhhc
Q 001078 929 EKQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRADMGE-LYDMDIK-GRPLAYTPFCDNNKDMDGYRFWRQGFWKDHL 1006 (1162)
Q Consensus 929 ~~~r~~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~DL~e-L~~~Dl~-g~~~Aav~d~~~~~~~~g~~~w~~gyw~~~L 1006 (1162)
.+-+...+.... ...+- .++|-+.++|+|+++.+++.. .. +..+ |..+|...-..-.+....|.|-+..--...+
T Consensus 69 ~sm~Rm~~i~~~-~~~~~-~evDyLf~~dvd~~F~~~vG~E~L-~p~~~~~lva~lHp~~y~~~~~~fpYERrp~S~AyI 145 (246)
T 4ayl_A 69 NTLKRFHIFLRI-KEQLE-RETDYLFFFNANLLFTSPIGKEIL-PPSDSNGLLGTMHPGFYNKPNSEFTYERRDASTAYI 145 (246)
T ss_dssp HHHTHHHHHHTT-HHHHH-HHCSEEEEECTTEEECSCBCGGGS-CCTTSCCEEEEBCGGGC-------------------
T ss_pred cchHHHHHHHHH-HHHHH-hhCCEEEEEeCCceeeccCCHHHc-ccCCCCCEEEEechhhhCCCcccCcccCCccccccc
Confidence 111112232222 44443 459999999999999998763 21 1122 3344443211111111122221111111122
Q ss_pred ---CCCCeeeeeeeeEehHHHHHhcHHHHHHHHH-HHhccCCCCCCCCCCChhhhccc-cCceeecCCccccccCCCCcc
Q 001078 1007 ---RGRPYHISALYVVDLKRFRETAAGDNLRVFY-ETLSKDPNSLANLDQDLPNYAQH-TVPIFSLPQEWLWCESWCGNA 1081 (1162)
Q Consensus 1007 ---~~~~YfNSGV~liNL~~~R~~~~~dkl~~~~-~~ls~~~~sl~~~DQDllN~~~~-~~~I~~Lp~~wN~~~~~~~~e 1081 (1162)
.+..|+-+|++==-..+..+. ++.|...+ +.+ ++.-.-.+.|..-||..+. ..|-..|+++|+|.+.|..
T Consensus 146 p~~eGdfYY~ga~fGG~~~~vl~L--t~~c~~~i~~D~-~n~I~A~whDESHLNKYfl~~KP~~vLSPEY~wd~~~~~-- 220 (246)
T 4ayl_A 146 PEGEGRYYYAGGLSGGCTKAYLKL--CTTICSWVDRDA-TNHIIPIWHDESLINKYFLDNPPAITLSPAYLYPEGWLL-- 220 (246)
T ss_dssp -----CCCBCSSEEEEEHHHHHHH--HHHHHHHHHHHH-TTCSSCSCCHHHHHHHHHHHSCCSEEECGGGGEETTCCC--
T ss_pred cCCCCCeEEeeeecCCcHHHHHHH--HHHHHHHHHHHH-hCCceEeccchhHhHHHHHhCCCCeeeCHHHcCCcccCC--
Confidence 256888777774333333322 22333322 222 2233334679999999874 3355569999999988743
Q ss_pred ccCCCeEE
Q 001078 1082 TKSKAKTI 1089 (1162)
Q Consensus 1082 ~~~~akiI 1089 (1162)
...+|+|
T Consensus 221 -p~~~kii 227 (246)
T 4ayl_A 221 -PFEPIIL 227 (246)
T ss_dssp -SSCCSEE
T ss_pred -CCccEEE
Confidence 2456776
No 18
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=89.08 E-value=6.6 Score=39.09 Aligned_cols=137 Identities=8% Similarity=-0.057 Sum_probs=80.1
Q ss_pred cEEEEEcCCCcchHHHHHHHHHHHhcc-cceEEEEEeeecccccchhccCCCCCCCCccCCCCCCCchHHHHHHHHHHHH
Q 001078 51 HAVYVLDPATVCGLEVIDMIMSLYENH-FPLRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLFLFIK 129 (1162)
Q Consensus 51 nlV~vvDps~~~~l~~l~~i~~~~~~~-iPvR~GlVp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~s~~~ar~f~~i~ 129 (1162)
.+|-+.|+..+-..++-..+..+++.. --+++-.+++.-. + .+.+...+++++...
T Consensus 24 ~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------~--------------~~~~~~~a~a~~~~~ 80 (184)
T 4dvc_A 24 VVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFM---------G--------------GNMGQAMSKAYATMI 80 (184)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSS---------S--------------GGGHHHHHHHHHHHH
T ss_pred EEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEEEecCCC---------C--------------CchHHHHHHHHHHHH
Confidence 688899999999988766666665443 2456666665322 0 133444455544443
Q ss_pred HhhChH-HHHHHHHHHHHhhhccCCCCCCchhhhhhHHhHhHhhccCCCCCCChhhhhhhhcccchhhhHHHHHHHHHHh
Q 001078 130 ESHGTQ-TAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFVFKL 208 (1162)
Q Consensus 130 ~~~g~~-~Al~FL~~~~~~~~~~~~~~~~~~~~~~~v~~af~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~f~~Rl 208 (1162)
..|.. .....+......... ...+.+.+...+ +. .......++..+.+.++...+....+..+++
T Consensus 81 -~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~a-~~-----~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~ 146 (184)
T 4dvc_A 81 -ALEVEDKMVPVMFNRIHTLRK-------PPKDEQELRQIF-LD-----EGIDAAKFDAAYNGFAVDSMVHRFDKQFQDS 146 (184)
T ss_dssp -HHTCHHHHHHHHHHHHHTSCC-------CCSSHHHHHHHH-HT-----TTCCHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred -HcCcHHHHHHHHHHHHHHHhh-------ccchHHHHHHHH-HH-----hCCCHHHHHHHHhCHHHHHHHHHHHHHHHHc
Confidence 33333 333333332221111 112222333322 11 1233456778888889999999999999999
Q ss_pred CCCcCCceeeEeceecc
Q 001078 209 GLTKLKCCLLMNGLVSE 225 (1162)
Q Consensus 209 gl~~~~p~vlvNGv~~~ 225 (1162)
|+++ .|.++|||+.+.
T Consensus 147 gv~g-TPtfiINGky~v 162 (184)
T 4dvc_A 147 GLTG-VPAVVVNNRYLV 162 (184)
T ss_dssp TCCS-SSEEEETTTEEE
T ss_pred CCCc-CCEEEECCEEee
Confidence 9965 699999998653
No 19
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=87.98 E-value=14 Score=37.32 Aligned_cols=138 Identities=8% Similarity=-0.066 Sum_probs=79.9
Q ss_pred ccEEEEEcCCCcchHHHHHHHHHHHhcc-cceEEEEEeeecccccchhccCCCCCCCCccCCCCCCCchHHHHHHHHHHH
Q 001078 50 FHAVYVLDPATVCGLEVIDMIMSLYENH-FPLRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLFLFI 128 (1162)
Q Consensus 50 ~nlV~vvDps~~~~l~~l~~i~~~~~~~-iPvR~GlVp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~s~~~ar~f~~i 128 (1162)
..++.+.|+..+-...+...+..+.+.. .-++|=.+|+.-. ..+...+++++..
T Consensus 24 ~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~-------------------------~~s~~aa~a~~aa 78 (195)
T 2znm_A 24 IEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHVVWQ-------------------------PEMLGLARMAAAV 78 (195)
T ss_dssp EEEEEEECTTSCCTTSSCHHHHHHHHHSCTTEEEEEEECCCS-------------------------GGGHHHHHHHHHH
T ss_pred cEEEEEECCCChhHHHHhHHHHHHHHHCCCceEEEEeccccC-------------------------cccHHHHHHHHHH
Confidence 4689999999998877666666665543 2344444454311 2355677777766
Q ss_pred HHhhChHHHHHHHHHHHHhhhccCCCCCCchhhhhhHHhHhHhhccCCCCCCChhhhhhhhcccchhhhHHHHHHHHHHh
Q 001078 129 KESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFVFKL 208 (1162)
Q Consensus 129 ~~~~g~~~Al~FL~~~~~~~~~~~~~~~~~~~~~~~v~~af~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~f~~Rl 208 (1162)
... |.. ..|...++...... ..+..+.+.+.+.. + +...-....+...+.+.++...+....+..+++
T Consensus 79 ~~~-~~~--~~~~~~lf~~~~~~----~~~~~~~~~l~~~a-~----~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~ 146 (195)
T 2znm_A 79 NLS-GLK--YQANPAVFKAVYEQ----KIRLENRSVAGKWA-L----SQKGFDGKKLMRAYDSPEAAAAALKMQKLTEQY 146 (195)
T ss_dssp HHH-TCH--HHHHHHHHHHHHHC----SSCTTSHHHHHHHH-H----TCSSSCHHHHHHHHTSHHHHHHHHHHHHHHHHT
T ss_pred HHc-CcH--HHHHHHHHHHHHHh----CCCCCCHHHHHHHH-H----HcCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHc
Confidence 543 432 34444444322110 01111223333332 2 110223345666677778888888888899999
Q ss_pred CCCcCCceeeEecee-cc
Q 001078 209 GLTKLKCCLLMNGLV-SE 225 (1162)
Q Consensus 209 gl~~~~p~vlvNGv~-~~ 225 (1162)
|+.+ .|.++|||.. +.
T Consensus 147 gv~g-tPt~ving~~~~~ 163 (195)
T 2znm_A 147 RIDS-TPTVIVGGKYRVI 163 (195)
T ss_dssp TCCS-SSEEEETTTEEEC
T ss_pred CCCC-CCeEEECCEEEEc
Confidence 9955 5999999986 44
No 20
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=85.48 E-value=33 Score=34.63 Aligned_cols=160 Identities=10% Similarity=0.049 Sum_probs=81.2
Q ss_pred CceEEEEEeeCCChhhHHHHHHHHHHHhcC-CCceEEEEEecCCCCCCCchhHHHHHHHHHhhcccchhhHHHHHHHHhh
Q 001078 314 KPVTHLLAVDVTSKKGMKLLHEGIRFLIGG-SNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQLCS 392 (1162)
Q Consensus 314 ~~~t~wvv~D~~~~~g~~l~~~al~~l~~~-~~~~Rv~~v~n~~~~~~~~~~~~~~~i~aa~~~~~~~~~~~~~l~~l~~ 392 (1162)
.++++....|+.++-.+.+... ++.+.+. ..++++..++-+... ......++..++.. +. . ..+...+..
T Consensus 25 ~~~~vv~f~d~~Cp~C~~~~~~-l~~l~~~~~~~v~~~~~~~~~~~---~s~~aa~a~~aa~~-~g-~---~~~~~~lf~ 95 (195)
T 3hd5_A 25 GKIEVLEFFAYTCPHCAAIEPM-VEDWAKTAPQDVVLKQVPIAFNA---GMKPLQQLYYTLQA-LE-R---PDLHPKVFT 95 (195)
T ss_dssp TCEEEEEEECTTCHHHHHHHHH-HHHHHHTCCTTEEEEEEECCSSG---GGHHHHHHHHHHHH-TT-C---TTHHHHHHH
T ss_pred CCeEEEEEECCCCccHHHhhHH-HHHHHHHCCCCeEEEEEecccCc---chHHHHHHHHHHHh-cC-H---HHHHHHHHH
Confidence 4578888999999988877653 4444333 235666655543211 11222333333221 11 1 122223322
Q ss_pred hhhhhhhhcccccccchHHHHHHHHHHHHhcCCChHhHhhccCccchhhHHHHHHHHHHHHHHHhCCCCCCcEEEEcCEE
Q 001078 393 FYERTYLLASSATADSTQAFIDKVCEFAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNGRV 472 (1162)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~NGR~ 472 (1162)
..... ...+.+ .+.+.++++..|++.+.+...+.+-. ....+..... ..+.+|+. |.+.+++||++
T Consensus 96 ~~~~~--------~~~~~~-~~~l~~~a~~~Gld~~~~~~~~~s~~---~~~~v~~~~~-~a~~~gv~-gtPt~ving~~ 161 (195)
T 3hd5_A 96 AIHTE--------RKRLFD-KKAMGEWAASQGVDRAKFDSVFDSFS---VQTQVQRASQ-LAEAAHID-GTPAFAVGGRY 161 (195)
T ss_dssp HHHTS--------CCCCCS-HHHHHHHHHHTTCCHHHHHHHHTCHH---HHHHHHHHHH-HHHHTTCC-SSSEEEETTTE
T ss_pred HHHHh--------ccCCCC-HHHHHHHHHHhCCCHHHHHHHHcCHH---HHHHHHHHHH-HHHHhCCC-cCceEEECCEE
Confidence 11100 010000 13345556677888887776654422 2212222222 34566886 89999999998
Q ss_pred ecCCCCCCCCh-hhHHHHHHHHHHhh
Q 001078 473 TFPIDESTFLS-HDLSLLESVEFKHR 497 (1162)
Q Consensus 473 i~~~~~~~~~~-~d~~~l~~~e~~~~ 497 (1162)
+.-. ....+. ++|..++.+-..+.
T Consensus 162 ~~~g-~~~~~~~e~~~~~i~~L~~~~ 186 (195)
T 3hd5_A 162 MTSP-VLAGNDYAGALKVVDQLIVQS 186 (195)
T ss_dssp EECT-TTTTGGGTTHHHHHHHHHHHH
T ss_pred EeCc-cccCChHHHHHHHHHHHHHHH
Confidence 8442 123445 67777666554443
No 21
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=84.30 E-value=39 Score=34.45 Aligned_cols=159 Identities=8% Similarity=-0.052 Sum_probs=81.7
Q ss_pred CceEEEEEeeCCChhhHHHHHHHHHHHhcCCCceEEEEEecCCCCCCCchhHHHHHHHHHhhcccchhhHHHHHHHHhhh
Q 001078 314 KPVTHLLAVDVTSKKGMKLLHEGIRFLIGGSNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQLCSF 393 (1162)
Q Consensus 314 ~~~t~wvv~D~~~~~g~~l~~~al~~l~~~~~~~Rv~~v~n~~~~~~~~~~~~~~~i~aa~~~~~~~~~~~~~l~~l~~~ 393 (1162)
.++|+....|+.++..+.+.. .++-+.+.... |+.|.+-|-.-. ......+++..++. .+..... ..+...+...
T Consensus 24 ~~v~vv~f~d~~Cp~C~~~~~-~l~~~~~~~~~-~v~~~~~p~~~~-~~~~~aa~a~~aa~-~~g~~~~-~~~~~~lf~a 98 (193)
T 3hz8_A 24 GKVEVLEFFGYFCPHCAHLEP-VLSKHAKSFKD-DMYLRTEHVVWQ-KEMLTLARLAAAVD-MAAADSK-DVANSHIFDA 98 (193)
T ss_dssp TSEEEEEEECTTCHHHHHHHH-HHHHHHTTCCT-TEEEEEEECCCS-GGGHHHHHHHHHHH-HHTGGGH-HHHHHHHHHH
T ss_pred CCcEEEEEECCCChhHHHHHH-HHHHHHHHCCC-CeEEEEecCCCC-cccHHHHHHHHHHH-HcCchhH-HhHHHHHHHH
Confidence 468899999999999888764 44555443333 555655554321 11123344444432 1221111 0022222211
Q ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhc-CCChHhHhhccCccchhhHHHHHHHHHHHHHHHhCCCCCCcEEEEcCEE
Q 001078 394 YERTYLLASSATADSTQAFIDKVCEFAEAN-GLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNGRV 472 (1162)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~NGR~ 472 (1162)
.... ...+.+ .+.+.++++.. |++.+.+...+.+-... ..+.... -..+.+|+. |.+.+++||++
T Consensus 99 ~~~~--------~~~~~~-~~~l~~~a~~~~Gld~~~~~~~~~s~~~~---~~v~~~~-~~a~~~gv~-gtPt~vvng~~ 164 (193)
T 3hz8_A 99 MVNQ--------KIKLQN-PEVLKKWLGEQTAFDGKKVLAAYESPESQ---ARADKMQ-ELTETFQID-GVPTVIVGGKY 164 (193)
T ss_dssp HHTS--------CCCTTS-HHHHHHHHHHCTTTTHHHHHHHHHSHHHH---HHHHHHH-HHHHHTTCC-SSSEEEETTTE
T ss_pred HHHh--------CcCCCC-HHHHHHHHHHccCCCHHHHHHHHcCHHHH---HHHHHHH-HHHHHhCCC-cCCEEEECCEE
Confidence 1100 011101 23455566677 88888887766442222 1112222 244667876 89999999999
Q ss_pred ecCCCCCCCChhhHHHHHHHHHH
Q 001078 473 TFPIDESTFLSHDLSLLESVEFK 495 (1162)
Q Consensus 473 i~~~~~~~~~~~d~~~l~~~e~~ 495 (1162)
+.-. . +.++|..++.....
T Consensus 165 ~~~~---~-~~e~l~~~i~~ll~ 183 (193)
T 3hz8_A 165 KVEF---A-DWESGMNTIDLLAD 183 (193)
T ss_dssp EECC---S-SHHHHHHHHHHHHH
T ss_pred EecC---C-CHHHHHHHHHHHHH
Confidence 8542 2 66777776655443
No 22
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=83.86 E-value=44 Score=34.73 Aligned_cols=164 Identities=13% Similarity=0.043 Sum_probs=88.2
Q ss_pred CceEEEEEeeCCChhhHHHHHHHHHHHhc---CCCceEEEEEecCCCCCCCchhHHHHHHHHHhhcccchhhHHHHHHHH
Q 001078 314 KPVTHLLAVDVTSKKGMKLLHEGIRFLIG---GSNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQL 390 (1162)
Q Consensus 314 ~~~t~wvv~D~~~~~g~~l~~~al~~l~~---~~~~~Rv~~v~n~~~~~~~~~~~~~~~i~aa~~~~~~~~~~~~~l~~l 390 (1162)
.++|+....|+.++-.+++.......|++ ....+|+.+.+-|-. +... .+-.++ +... .++...|...|
T Consensus 15 a~vtivef~D~~Cp~C~~~~~~~~~~l~~~~i~~g~v~~v~r~~pl~----~~s~--~aa~aa-~~~~-~~~f~~~~~~L 86 (205)
T 3gmf_A 15 AKLRLVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNFVRD----PIDM--TVALIT-NCVP-PSRFFTLHTAF 86 (205)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSEEEEEEECCCS----HHHH--HHHHHH-HHSC-HHHHHHHHHHH
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHHhccCCeEEEEEEeCCCC----cchH--HHHHHH-HhcC-HhHHHHHHHHH
Confidence 46999999999999999887666666641 246899998887632 1111 111111 1111 24555565666
Q ss_pred hhhhhh-----hhhhcc----ccccc---chHHH--HHHHHHHHHhcCCChHhHhhccCccchhhHHHHHHHHHHHHHHH
Q 001078 391 CSFYER-----TYLLAS----SATAD---STQAF--IDKVCEFAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQ 456 (1162)
Q Consensus 391 ~~~~~~-----~~~~~~----~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 456 (1162)
...... ..+... -+... .+... .+.+.++++..|++.+.+...+.+-.. ...+.+......+.
T Consensus 87 f~~q~~~~~~~~~~~~~~~~~w~~~~~~~~l~~ia~~~~L~~~a~~~Gld~~~~~~~l~s~~~---~~~v~~~~~~a~~~ 163 (205)
T 3gmf_A 87 MRSQAQWIGPLANSTEAQRQRWFNGTFATRTRAIASDFRFYDFMAARGMDRSTLDRCLSNEAL---AKKLAAETDEAINQ 163 (205)
T ss_dssp HHTHHHHCHHHHHCCHHHHHTTSSSCHHHHHHHHHHHTTHHHHHHTTTCCHHHHHHHHTCHHH---HHHHHHHHHHHHHH
T ss_pred HHcCHHHHhcccccchhhhhccccchhHHHHHhccCHHHHHHHHHHcCCCHHHHHHHHcCHHH---HHHHHHHHHHHHHH
Confidence 542210 000000 00000 00000 112445566778888888877754322 21222333333266
Q ss_pred hCCCCCCcEEEEcCEEecCCCCCCCChhhHHHHHHHH
Q 001078 457 LGVESGANAVITNGRVTFPIDESTFLSHDLSLLESVE 493 (1162)
Q Consensus 457 l~l~~~~~~~~~NGR~i~~~~~~~~~~~d~~~l~~~e 493 (1162)
+|+. |.+++++||+.+. ...+.++|+.++.-.
T Consensus 164 ~GV~-GtPtfvvng~~~~----G~~~~e~l~~~i~~~ 195 (205)
T 3gmf_A 164 YNVS-GTPSFMIDGILLA----GTHDWASLRPQILAR 195 (205)
T ss_dssp HCCC-SSSEEEETTEECT----TCCSHHHHHHHHHHH
T ss_pred cCCc-cCCEEEECCEEEe----CCCCHHHHHHHHHHH
Confidence 7886 8999999999762 224566776666433
No 23
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0
Probab=83.33 E-value=15 Score=37.38 Aligned_cols=137 Identities=8% Similarity=-0.016 Sum_probs=82.6
Q ss_pred ccEEEEEcCCCcchHHHHHHH---HHHHhccc--ceEEEEEeeecccccchhccCCCCCCCCccCCCCCCCchHHHHHHH
Q 001078 50 FHAVYVLDPATVCGLEVIDMI---MSLYENHF--PLRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRL 124 (1162)
Q Consensus 50 ~nlV~vvDps~~~~l~~l~~i---~~~~~~~i--PvR~GlVp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~s~~~ar~ 124 (1162)
-.+|-+.|+..+....+-..+ ..+ .... .+||-.+++.-. ...+...+|+
T Consensus 16 ~~vvef~d~~Cp~C~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~------------------------~~~s~~aa~a 70 (189)
T 3l9v_A 16 PAVVEFFSFYCPPCYAFSQTMGVDQAI-RHVLPQGSRMVKYHVSLL------------------------GPLGHELTRA 70 (189)
T ss_dssp CSEEEEECTTCHHHHHHHHTSCHHHHH-HTTCCTTCCEEEEECSSS------------------------STTHHHHHHH
T ss_pred CEEEEEECCCChhHHHHhHhccchHHH-HHhCCCCCEEEEEechhc------------------------ccccHHHHHH
Confidence 478999999999998866553 333 3333 478887777531 0346667787
Q ss_pred HHHHHHhhChHHHH--HHHHHHHHhhhccCCCCCCchhhhhhHHhHhHhhccCCCCCCChhhhhhhhcccchhhhHHHHH
Q 001078 125 FLFIKESHGTQTAF--QFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESS 202 (1162)
Q Consensus 125 f~~i~~~~g~~~Al--~FL~~~~~~~~~~~~~~~~~~~~~~~v~~af~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~ 202 (1162)
++ ..+..|....+ .+...+.... . ..+.+.+.... +.+. .-..+.+...+.+.++...++...
T Consensus 71 ~~-aA~~~g~~~~~~~~lf~a~~~~~--------~-~~~~~~l~~~a-~~~~----Gld~~~~~~~~~s~~~~~~v~~~~ 135 (189)
T 3l9v_A 71 WA-LAMVMKETDVIEKAFFTAGMVEK--------R-LHSPDDVRRVF-MSAT----GISRGEYDRSIKSPAVNDMVALQE 135 (189)
T ss_dssp HH-HHHHHTCHHHHHHHHHHHHTTTC--------C-CCSHHHHHHHH-HHHH----CCCHHHHHHHTTSHHHHHHHHHHH
T ss_pred HH-HHHHcCcHHHHHHHHHHHHhhhc--------c-CCCHHHHHHHH-HHcc----CCCHHHHHHHHhhHHHHHHHHHHH
Confidence 54 44556654332 2222222211 1 12333343333 2110 122345667777888888888889
Q ss_pred HHHHHhCCCcCCceeeEeceeccCc
Q 001078 203 MFVFKLGLTKLKCCLLMNGLVSESS 227 (1162)
Q Consensus 203 ~f~~Rlgl~~~~p~vlvNGv~~~~~ 227 (1162)
+..+++|+.+ .|.++|||...-..
T Consensus 136 ~~a~~~gv~G-tPt~~vng~~~v~~ 159 (189)
T 3l9v_A 136 RLFKEYGVRG-TPSVYVRGRYHINN 159 (189)
T ss_dssp HHHHHTTCCS-SSEEEETTTEEECG
T ss_pred HHHHHhCCCc-cCEEEECCEEEECc
Confidence 9999999965 69999999865433
No 24
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}
Probab=82.13 E-value=7.8 Score=39.71 Aligned_cols=146 Identities=12% Similarity=0.069 Sum_probs=83.6
Q ss_pred ccEEEEEcCCCcchHHHHHHHHHHHhcccceEEEEEeeecccccchhccCCCCCCCCccCCCCCCCchHHHHHHHHHHHH
Q 001078 50 FHAVYVLDPATVCGLEVIDMIMSLYENHFPLRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLFLFIK 129 (1162)
Q Consensus 50 ~nlV~vvDps~~~~l~~l~~i~~~~~~~iPvR~GlVp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~s~~~ar~f~~i~ 129 (1162)
.++|...|+..+...++...+...++...|=++-+|+-.-. ... ...|...+|+...+.
T Consensus 16 vtiv~f~D~~Cp~C~~~~~~~~~~l~~~~~g~v~~v~r~~p-------~~~--------------h~~s~~aaraa~aa~ 74 (182)
T 3gn3_A 16 RLFEVFLEPTCPFSVKAFFKLDDLLAQAGEDNVTVRIRLQS-------QPW--------------HMFSGVIVRCILAAA 74 (182)
T ss_dssp EEEEEEECTTCHHHHHHHTTHHHHHHHHCTTTEEEEEEECC-------CTT--------------STTHHHHHHHHHHHT
T ss_pred EEEEEEECCCCHhHHHHHHHHHHHHHHhCCCCEEEEEEEcC-------CCC--------------CccHHHHHHHHHHHH
Confidence 46889999999999887666555544433534444443211 000 134566778777665
Q ss_pred Hhh-ChHHHHHHHHHHHHhhhccC-CC---CCCchhhhhhHHhHhHhhccCCCCCCChhhhhhhhcccchhhhHHHHHHH
Q 001078 130 ESH-GTQTAFQFLSNVNRLRMESA-DS---ADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMF 204 (1162)
Q Consensus 130 ~~~-g~~~Al~FL~~~~~~~~~~~-~~---~~~~~~~~~~v~~af~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~f 204 (1162)
+.. |......|...+++....-. +. .....++...+-..+.+.+ +-.. +.++.++++...++...+.
T Consensus 75 ~~~~~~~~f~~~~~aLf~~q~~~~~~~~~~~~~~~~~~~~~l~~~a~~~----Gld~----~~~l~~~~~~~~v~~~~~~ 146 (182)
T 3gn3_A 75 TLEGGKESAKAVMTAVASHREEFEFEHHAGGPNLDATPNDIIARIERYS----GLAL----AEAFANPELEHAVKWHTKY 146 (182)
T ss_dssp TSTTHHHHHHHHHHHHHHTGGGGSCBTTTBSGGGGCCHHHHHHHHHHHH----TCCC----HHHHHCGGGHHHHHHHHHH
T ss_pred HhccChHHHHHHHHHHHhcCcccccccccccccCCCCHHHHHHHHHHHh----CCCH----HHHhcChHHHHHHHHHHHH
Confidence 433 23567888888876432100 00 0001122222222222221 1122 2235677888888888889
Q ss_pred HHHhCCCcCCceeeEeceecc
Q 001078 205 VFKLGLTKLKCCLLMNGLVSE 225 (1162)
Q Consensus 205 ~~Rlgl~~~~p~vlvNGv~~~ 225 (1162)
.+++|+.+ .|.++|||+.++
T Consensus 147 a~~~GV~g-tPtf~ing~~~~ 166 (182)
T 3gn3_A 147 ARQNGIHV-SPTFMINGLVQP 166 (182)
T ss_dssp HHHHTCCS-SSEEEETTEECT
T ss_pred HHHCCCCc-cCEEEECCEEcc
Confidence 99999965 599999999986
No 25
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=81.23 E-value=44 Score=32.91 Aligned_cols=148 Identities=14% Similarity=0.027 Sum_probs=85.4
Q ss_pred CceEEEEEeeCCChhhHHHHHHHHHHHhcCCCceEEEEEecCCCCCCCchhHHHHHHHHHhhcccchhhHHHHHHHHhhh
Q 001078 314 KPVTHLLAVDVTSKKGMKLLHEGIRFLIGGSNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQLCSF 393 (1162)
Q Consensus 314 ~~~t~wvv~D~~~~~g~~l~~~al~~l~~~~~~~Rv~~v~n~~~~~~~~~~~~~~~i~aa~~~~~~~~~~~~~l~~l~~~ 393 (1162)
.++++.+..|+.++-.+++....-+.+++ ...+|+.+.+-|-.. ..+..-.+++.++. .+ ++...+...+...
T Consensus 22 a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~-~~~v~~~~~~~p~~~--~~s~~aa~~~~~a~-~~---~~~~~~~~~lf~~ 94 (175)
T 3gyk_A 22 GDVTVVEFFDYNCPYCRRAMAEVQGLVDA-DPNVRLVYREWPILG--EGSDFAARAALAAR-QQ---GKYEAFHWALMGM 94 (175)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHH-CTTEEEEEEECCCSC--HHHHHHHHHHHHGG-GG---TCHHHHHHHHHTC
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHh-CCCEEEEEEeCCCCC--CChHHHHHHHHHHH-HH---hHHHHHHHHHHhc
Confidence 35888899999999998887655555543 345899988877532 11112233333332 22 2334444444331
Q ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhcCCChHhHhhccCccchhhHHHHHHHHHHHHHHHhCCCCCCcEEEEcCEEe
Q 001078 394 YERTYLLASSATADSTQAFIDKVCEFAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNGRVT 473 (1162)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~NGR~i 473 (1162)
. ... ..+.+.++++..|++.+.+...+.+-..... +..... ..+.+|+. |.+.+++||+.+
T Consensus 95 ~------------~~~--~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~---v~~~~~-~a~~~gv~-gtPt~~i~g~~~ 155 (175)
T 3gyk_A 95 S------------GKA--NETGVLRIAREVGLDTEQLQRDMEAPEVTAH---IAQSMA-LAQKLGFN-GTPSFVVEDALV 155 (175)
T ss_dssp S------------SCC--SHHHHHHHHHHTTCCHHHHHHHTTCHHHHHH---HHHHHH-HHHHHTCC-SSSEEEETTEEE
T ss_pred C------------CCC--CHHHHHHHHHHcCCCHHHHHHHHhChHHHHH---HHHHHH-HHHHcCCc-cCCEEEECCEEe
Confidence 0 001 1134556677789999888877755332222 222222 34567876 889999999977
Q ss_pred cCCCCCCCChhhHHHHHH
Q 001078 474 FPIDESTFLSHDLSLLES 491 (1162)
Q Consensus 474 ~~~~~~~~~~~d~~~l~~ 491 (1162)
. ...+.++|+.+++
T Consensus 156 ~----G~~~~~~l~~~i~ 169 (175)
T 3gyk_A 156 P----GFVEQSQLQDAVD 169 (175)
T ss_dssp C----SCCCHHHHHHHHH
T ss_pred e----CCCCHHHHHHHHH
Confidence 3 1234566666553
No 26
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=81.19 E-value=47 Score=33.24 Aligned_cols=156 Identities=13% Similarity=0.030 Sum_probs=82.3
Q ss_pred CceEEEEEeeCCChhhHHHHHHHHHHHhcC---CCceEEEEEecCCCCCCCchhHHHHHHHHHhhcccchhhHHHHHHHH
Q 001078 314 KPVTHLLAVDVTSKKGMKLLHEGIRFLIGG---SNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQL 390 (1162)
Q Consensus 314 ~~~t~wvv~D~~~~~g~~l~~~al~~l~~~---~~~~Rv~~v~n~~~~~~~~~~~~~~~i~aa~~~~~~~~~~~~~l~~l 390 (1162)
.++++.+..|+.++-...+.....+.+++. ..++|+-+.+-|-... .+....+++.++.. +. ..+...+...+
T Consensus 11 a~~~i~~f~D~~Cp~C~~~~~~l~~~l~~~~~~~~~v~~~~~~~p~~~~--~s~~aa~a~~~a~~-~~-~~~~~~~~~~l 86 (186)
T 3bci_A 11 GKPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFLGK--DSIVGSRASHAVLM-YA-PKSFLDFQKQL 86 (186)
T ss_dssp CCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSSEEEEEECCCSCT--THHHHHHHHHHHHH-HC-GGGHHHHHHHH
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHHHHhccCCeEEEEEEecCcCCc--chHHHHHHHHHHHH-hC-HHHHHHHHHHH
Confidence 358888999999998887765544444321 2468988887764321 12223344433321 11 12344555555
Q ss_pred hhhhhhhhhhcccccccchHHHHHHHHHHHHhcCCChHh---Hhhcc--CccchhhHHHHHHHHHHHHHHHhCCCCCCcE
Q 001078 391 CSFYERTYLLASSATADSTQAFIDKVCEFAEANGLSSKV---YRASL--PEYSKGKVRKQLNKVVQFLHRQLGVESGANA 465 (1162)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l--~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~ 465 (1162)
........ ..... .+.+.++++..|++.+. +...+ .+-. ....+..... ..+.+|+. |.+.
T Consensus 87 f~~~~~~~------~~~~~---~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~~---~~~~v~~~~~-~a~~~gv~-GtPt 152 (186)
T 3bci_A 87 FAAQQDEN------KEWLT---KELLDKHIKQLHLDKETENKIIKDYKTKDSK---SWKAAEKDKK-IAKDNHIK-TTPT 152 (186)
T ss_dssp HHTCCCTT------SCCCC---HHHHHHHHHTTCCCHHHHHHHHHHHHSTTCH---HHHHHHHHHH-HHHHTTCC-SSSE
T ss_pred HhcCcccC------CCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHHhcCHH---HHHHHHHHHH-HHHHcCCC-CCCe
Confidence 43211100 00011 13445566677888877 76655 3321 1111222222 34566876 8999
Q ss_pred EEEcCEEecCCCCCCCChhhHHHHHH
Q 001078 466 VITNGRVTFPIDESTFLSHDLSLLES 491 (1162)
Q Consensus 466 ~~~NGR~i~~~~~~~~~~~d~~~l~~ 491 (1162)
+++||+.+. ...+.++|..++.
T Consensus 153 ~vvnG~~~~----G~~~~~~l~~~i~ 174 (186)
T 3bci_A 153 AFINGEKVE----DPYDYESYEKLLK 174 (186)
T ss_dssp EEETTEECS----CTTCHHHHHHHHH
T ss_pred EEECCEEcC----CCCCHHHHHHHHH
Confidence 999999763 1234556665553
No 27
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=78.87 E-value=57 Score=32.75 Aligned_cols=160 Identities=9% Similarity=0.053 Sum_probs=82.5
Q ss_pred CCceEEEEEeeCCChhhHHHHHHHHHHHhcC-CCceEEEEEecCCCCCCCchhHHHHHHHHHhhcccchhhHHHHHHHHh
Q 001078 313 VKPVTHLLAVDVTSKKGMKLLHEGIRFLIGG-SNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQLC 391 (1162)
Q Consensus 313 ~~~~t~wvv~D~~~~~g~~l~~~al~~l~~~-~~~~Rv~~v~n~~~~~~~~~~~~~~~i~aa~~~~~~~~~~~~~l~~l~ 391 (1162)
..++++....|+.++-.+.+.. .++.+.+. ...+++-.++-+-.. ......++..++. .+. +...+...|.
T Consensus 24 ~~~~~i~~f~d~~Cp~C~~~~~-~l~~l~~~~~~~v~~~~~p~~~~~---~~~~aa~a~~aa~-~~g---~~~~~~~~lf 95 (192)
T 3h93_A 24 PGKIEVVELFWYGCPHCYAFEP-TIVPWSEKLPADVHFVRLPALFGG---IWNVHGQMFLTLE-SMG---VEHDVHNAVF 95 (192)
T ss_dssp TTSEEEEEEECTTCHHHHHHHH-HHHHHHHTCCTTEEEEEEECCCST---HHHHHHHHHHHHH-HHT---CCHHHHHHHH
T ss_pred CCCCEEEEEECCCChhHHHhhH-HHHHHHHhCCCCeEEEEEehhhcc---chHHHHHHHHHHH-HcC---CHHHHHHHHH
Confidence 3468888999999999888775 44444333 334554444332211 1222333433332 222 2233444443
Q ss_pred hhhhhhhhhcccccccchHHHHHHHHHHHHhcCCChHhHhhccCccchhhHHHHHHHHHHHHHHHhCCCCCCcEEEEcCE
Q 001078 392 SFYERTYLLASSATADSTQAFIDKVCEFAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNGR 471 (1162)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~NGR 471 (1162)
...... +..+. ..+.+.++++..|++.+.+...+.+-..... +..... ..+.+|+. |.+.+++||+
T Consensus 96 ~~~~~~--------~~~~~-~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~---v~~~~~-~a~~~gv~-gtPt~~vng~ 161 (192)
T 3h93_A 96 EAIHKE--------HKKLA-TPEEMADFLAGKGVDKEKFLSTYNSFAIKGQ---MEKAKK-LAMAYQVT-GVPTMVVNGK 161 (192)
T ss_dssp HHHHTS--------CCCCC-SHHHHHHHHHTTTCCHHHHHHHHTCHHHHHH---HHHHHH-HHHHHTCC-SSSEEEETTT
T ss_pred HHHHHh--------CcCCC-CHHHHHHHHHHcCCCHHHHHHHhhCHHHHHH---HHHHHH-HHHHhCCC-CCCeEEECCE
Confidence 321110 01110 1234556677788988888776654322222 222222 34556874 8999999999
Q ss_pred EecCCCCCCCChhhHHHHHHHHHH
Q 001078 472 VTFPIDESTFLSHDLSLLESVEFK 495 (1162)
Q Consensus 472 ~i~~~~~~~~~~~d~~~l~~~e~~ 495 (1162)
++.... ...+.++|..++.....
T Consensus 162 ~~~~~~-G~~~~e~l~~~i~~l~~ 184 (192)
T 3h93_A 162 YRFDIG-SAGGPEETLKLADYLIE 184 (192)
T ss_dssp EEEEHH-HHTSHHHHHHHHHHHHH
T ss_pred EEeccc-ccCCHHHHHHHHHHHHH
Confidence 874211 12346777776655443
No 28
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*
Probab=78.79 E-value=47 Score=35.09 Aligned_cols=164 Identities=6% Similarity=0.006 Sum_probs=89.1
Q ss_pred CceEEEEEeeCCChhhHHHHHHHHHHHhc---CCCceEEEEEecCCCCCCCchhHHHHHHHHHhhcccchhhHHHHHHHH
Q 001078 314 KPVTHLLAVDVTSKKGMKLLHEGIRFLIG---GSNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQL 390 (1162)
Q Consensus 314 ~~~t~wvv~D~~~~~g~~l~~~al~~l~~---~~~~~Rv~~v~n~~~~~~~~~~~~~~~i~aa~~~~~~~~~~~~~l~~l 390 (1162)
.++|+....|+.++-.+++-...+..+++ ...++|+-+.+-|-. +.. .++-.++.. ....++...|...|
T Consensus 39 A~vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~~~p~~----~~s--~~Aa~aa~a-a~~~~~f~~~~~aL 111 (226)
T 3f4s_A 39 APILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRHFPLD----YRG--LKAAMLSHC-YEKQEDYFNFNKAV 111 (226)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEEECCCS----HHH--HHHHHHGGG-CCSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEEeCCCC----hhH--HHHHHHHHH-hhChHHHHHHHHHH
Confidence 46899999999999998887654444432 135799999988752 111 112222221 12223445555555
Q ss_pred hhhhhhhhhhcccccccchHHHHHHHHHHHHhcCCChHhHhhccCccchhhHHHHHHHHHHHHHHHhCCCCCCcEEEE--
Q 001078 391 CSFYERTYLLASSATADSTQAFIDKVCEFAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVIT-- 468 (1162)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~-- 468 (1162)
...... ... . .. ...+.+.++++..|++.+.+...+.+-... ..+.+.....++.+|+. |.+++++
T Consensus 112 F~~q~~--~~~----~-~~-~~~~~L~~iA~~~Gld~~~~~~~l~s~~~~---~~v~~~~~~a~~~~GV~-GtPtfvv~~ 179 (226)
T 3f4s_A 112 FNSIDS--WNY----Y-NL-SDLTLLQRIAALSNLKQDAFNQCINDKKIM---DKIVNDKSLAINKLGIT-AVPIFFIKL 179 (226)
T ss_dssp HHTGGG--SCS----S-ST-TCCHHHHHHHHHTTCCHHHHHHHHTCHHHH---HHHHHHHHHHHHHHCCC-SSCEEEEEE
T ss_pred HHhCHh--hcc----c-cc-CcHHHHHHHHHHcCCCHHHHHHHHhCHHHH---HHHHHHHHHHHHHcCCC-cCCEEEEEc
Confidence 542111 000 0 00 011344556777889888888776543222 12223333333337886 8899999
Q ss_pred -cCEEec-CCC---CCCCChhhHHHHHHHHHHh
Q 001078 469 -NGRVTF-PID---ESTFLSHDLSLLESVEFKH 496 (1162)
Q Consensus 469 -NGR~i~-~~~---~~~~~~~d~~~l~~~e~~~ 496 (1162)
||+.+. .-+ ...-+.++|..++......
T Consensus 180 ~nG~~~~Ga~~~~~~G~~~~e~l~~~I~~~l~~ 212 (226)
T 3f4s_A 180 NDDKSYIEHNKVKHGGYKELKYFTNVIDKLYGK 212 (226)
T ss_dssp CCTTCCCCGGGGEEESCCCHHHHHHHHHHHHHH
T ss_pred CCCEEeeCCCCcccccccCHHHHHHHHHHHHhc
Confidence 999762 100 1122367787777655443
No 29
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Probab=77.22 E-value=39 Score=34.50 Aligned_cols=137 Identities=7% Similarity=-0.002 Sum_probs=82.7
Q ss_pred ccEEEEEcCCCcchHHHHHHH---HHHHhcccc--eEEEEEeeecccccchhccCCCCCCCCccCCCCCCCchHHHHHHH
Q 001078 50 FHAVYVLDPATVCGLEVIDMI---MSLYENHFP--LRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRL 124 (1162)
Q Consensus 50 ~nlV~vvDps~~~~l~~l~~i---~~~~~~~iP--vR~GlVp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~s~~~ar~ 124 (1162)
-.+|-+.|+..+-...+-..+ ..+.+ ..| +||-.+++.-. | ..+...+++
T Consensus 23 ~~vvef~d~~Cp~C~~~~~~l~~~~~l~~-~~~~~v~~~~~~~~~~---------~---------------~~s~~aa~a 77 (191)
T 3l9s_A 23 PQVLEFFSFYCPHCYQFEEVLHVSDNVKK-KLPEGTKMTKYHVEFL---------G---------------PLGKELTQA 77 (191)
T ss_dssp SCEEEEECTTCHHHHHHHHTSCHHHHHHH-HSCTTCCEEEEECSSS---------S---------------TTHHHHHHH
T ss_pred CeEEEEECCCChhHHHhChhccchHHHHH-hCCCCcEEEEEecccc---------c---------------ccCHHHHHH
Confidence 489999999999998866554 34433 333 78877777421 0 335666777
Q ss_pred HHHHHHhhChHHHH-HHHHHHHHhhhccCCCCCCchhhhhhHHhHhHhhccCCCCCCChhhhhhhhcccchhhhHHHHHH
Q 001078 125 FLFIKESHGTQTAF-QFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSM 203 (1162)
Q Consensus 125 f~~i~~~~g~~~Al-~FL~~~~~~~~~~~~~~~~~~~~~~~v~~af~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~ 203 (1162)
++. .+..|....+ .-|.+...... . ..+.+.+.... +.+ .-..+.+...+.+.++...++...+
T Consensus 78 ~~a-A~~~g~~~~~~~~lf~a~~~~~-------~-~~~~~~L~~~a-~~~-----Gld~~~~~~~~~s~~~~~~v~~~~~ 142 (191)
T 3l9s_A 78 WAV-AMALGVEDKVTVPLFEAVQKTQ-------T-VQSAADIRKVF-VDA-----GVKGEDYDAAWNSFVVKSLVAQQEK 142 (191)
T ss_dssp HHH-HHHHTCHHHHHHHHHHHHHTSC-------C-CSSHHHHHHHH-HHT-----TCCHHHHHHHHTSHHHHHHHHHHHH
T ss_pred HHH-HHHcCcHHHHHHHHHHHHHhcC-------C-CCCHHHHHHHH-HHc-----CCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 554 4555654332 22222221110 0 12233333333 221 2234467777788888888888899
Q ss_pred HHHHhCCCcCCceeeEeceeccCc
Q 001078 204 FVFKLGLTKLKCCLLMNGLVSESS 227 (1162)
Q Consensus 204 f~~Rlgl~~~~p~vlvNGv~~~~~ 227 (1162)
..+++|+.+ .|.++|||..+-..
T Consensus 143 ~a~~~gv~g-tPtfvvnG~~~v~~ 165 (191)
T 3l9s_A 143 AAADLQLQG-VPAMFVNGKYQINP 165 (191)
T ss_dssp HHHHTTCCS-SSEEEETTTEEECG
T ss_pred HHHHhCCcc-cCEEEECCEEEECc
Confidence 999999965 59999999976443
No 30
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=75.99 E-value=27 Score=36.31 Aligned_cols=45 Identities=4% Similarity=0.112 Sum_probs=36.0
Q ss_pred ChhhhhhhhcccchhhhHHHHHHHH-HHhCCCcCCceeeEeceeccC
Q 001078 181 PQDMLLKLEKEKTFMDQSQESSMFV-FKLGLTKLKCCLLMNGLVSES 226 (1162)
Q Consensus 181 ~~~~~~~l~~~~~~d~~~~~~~~f~-~Rlgl~~~~p~vlvNGv~~~~ 226 (1162)
..+.+...+.+.++...+.+..+.. +++|+.+ .|.++|||..+..
T Consensus 136 d~~~~~~~l~s~~~~~~v~~~~~~a~~~~GV~G-tPtfvvng~~~~G 181 (205)
T 3gmf_A 136 DRSTLDRCLSNEALAKKLAAETDEAINQYNVSG-TPSFMIDGILLAG 181 (205)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCS-SSEEEETTEECTT
T ss_pred CHHHHHHHHcCHHHHHHHHHHHHHHHHHcCCcc-CCEEEECCEEEeC
Confidence 3446777778888888888888887 9999955 6999999998863
No 31
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Probab=75.32 E-value=51 Score=33.65 Aligned_cols=140 Identities=9% Similarity=0.068 Sum_probs=74.9
Q ss_pred ceEEEEEeeCCChhhHHHHHHH--HHHH-hcCCCceEEEEEecCCCCCCCchhHHHHHHHHHhhcccchhhHHHHHHHHh
Q 001078 315 PVTHLLAVDVTSKKGMKLLHEG--IRFL-IGGSNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQLC 391 (1162)
Q Consensus 315 ~~t~wvv~D~~~~~g~~l~~~a--l~~l-~~~~~~~Rv~~v~n~~~~~~~~~~~~~~~i~aa~~~~~~~~~~~~~l~~l~ 391 (1162)
.+|+....|+.++-.+++.... ++.+ ++-..++|+.++|-|-..+ .+...+++..++. ...... .+...+.
T Consensus 22 ~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~v~~~~~~~~~~~~--~s~~aa~a~~aA~-~~g~~~---~~~~~lf 95 (191)
T 3l9s_A 22 EPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHVEFLGP--LGKELTQAWAVAM-ALGVED---KVTVPLF 95 (191)
T ss_dssp SSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTTCCEEEEECSSSST--THHHHHHHHHHHH-HHTCHH---HHHHHHH
T ss_pred CCeEEEEECCCChhHHHhChhccchHHHHHhCCCCcEEEEEecccccc--cCHHHHHHHHHHH-HcCcHH---HHHHHHH
Confidence 4788889999999988876431 2222 2333479999998775321 1223334433332 222211 2222222
Q ss_pred hhhhhhhhhcccccccchHHHHHHHHHHHHhcCCChHhHhhccCccchhhHHHHHHHHHHHHHHHhCCCCCCcEEEEcCE
Q 001078 392 SFYERTYLLASSATADSTQAFIDKVCEFAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNGR 471 (1162)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~NGR 471 (1162)
+....+ .. + ...+.+.++++..|++.+.+...+.+....... .. ..-..+.+|+. |.+.+++||+
T Consensus 96 ~a~~~~--------~~-~-~~~~~L~~~a~~~Gld~~~~~~~~~s~~~~~~v---~~-~~~~a~~~gv~-gtPtfvvnG~ 160 (191)
T 3l9s_A 96 EAVQKT--------QT-V-QSAADIRKVFVDAGVKGEDYDAAWNSFVVKSLV---AQ-QEKAAADLQLQ-GVPAMFVNGK 160 (191)
T ss_dssp HHHHTS--------CC-C-SSHHHHHHHHHHTTCCHHHHHHHHTSHHHHHHH---HH-HHHHHHHTTCC-SSSEEEETTT
T ss_pred HHHHhc--------CC-C-CCHHHHHHHHHHcCCCHHHHHHHHhCHHHHHHH---HH-HHHHHHHhCCc-ccCEEEECCE
Confidence 211110 00 0 012345566777899998888776543222211 12 22245567886 8999999999
Q ss_pred EecC
Q 001078 472 VTFP 475 (1162)
Q Consensus 472 ~i~~ 475 (1162)
++..
T Consensus 161 ~~v~ 164 (191)
T 3l9s_A 161 YQIN 164 (191)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8733
No 32
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0
Probab=74.37 E-value=54 Score=33.23 Aligned_cols=138 Identities=13% Similarity=0.089 Sum_probs=74.8
Q ss_pred eEEEEEeeCCChhhHHHHHH--HHHHHhcC-CCceEEEEEecCCCCCCCchhHHHHHHHHHhhcccchhhHH-HHHHHHh
Q 001078 316 VTHLLAVDVTSKKGMKLLHE--GIRFLIGG-SNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVL-EFLDQLC 391 (1162)
Q Consensus 316 ~t~wvv~D~~~~~g~~l~~~--al~~l~~~-~~~~Rv~~v~n~~~~~~~~~~~~~~~i~aa~~~~~~~~~~~-~~l~~l~ 391 (1162)
.|+....|+.++-.+.+... ..+.+++. ..++|+..+|-|-..+ .+...+++..++.. .....+.. .++..+.
T Consensus 16 ~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~s~~aa~a~~aA~~-~g~~~~~~~~lf~a~~ 92 (189)
T 3l9v_A 16 PAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVSLLGP--LGHELTRAWALAMV-MKETDVIEKAFFTAGM 92 (189)
T ss_dssp CSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECSSSST--THHHHHHHHHHHHH-HTCHHHHHHHHHHHHT
T ss_pred CEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEechhccc--ccHHHHHHHHHHHH-cCcHHHHHHHHHHHHh
Confidence 56667779999998887654 22344332 3479999998875321 12233444333322 22111222 2222222
Q ss_pred hhhhhhhhhcccccccchHHHHHHHHHHHHhc-CCChHhHhhccCccchhhHHHHHHHHHHHHHHHhCCCCCCcEEEEcC
Q 001078 392 SFYERTYLLASSATADSTQAFIDKVCEFAEAN-GLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNG 470 (1162)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~NG 470 (1162)
... . .. ..+.+.++++.. |++.+.+...+.+...... +.... -..+.+|+. |.+.+++||
T Consensus 93 ~~~--~-~~-----------~~~~l~~~a~~~~Gld~~~~~~~~~s~~~~~~---v~~~~-~~a~~~gv~-GtPt~~vng 153 (189)
T 3l9v_A 93 VEK--R-LH-----------SPDDVRRVFMSATGISRGEYDRSIKSPAVNDM---VALQE-RLFKEYGVR-GTPSVYVRG 153 (189)
T ss_dssp TTC--C-CC-----------SHHHHHHHHHHHHCCCHHHHHHHTTSHHHHHH---HHHHH-HHHHHTTCC-SSSEEEETT
T ss_pred hhc--c-CC-----------CHHHHHHHHHHccCCCHHHHHHHHhhHHHHHH---HHHHH-HHHHHhCCC-ccCEEEECC
Confidence 110 0 10 113455566777 9999888877755322221 12222 244567886 899999999
Q ss_pred EEecC
Q 001078 471 RVTFP 475 (1162)
Q Consensus 471 R~i~~ 475 (1162)
|+.-.
T Consensus 154 ~~~v~ 158 (189)
T 3l9v_A 154 RYHIN 158 (189)
T ss_dssp TEEEC
T ss_pred EEEEC
Confidence 97743
No 33
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*
Probab=71.56 E-value=72 Score=33.62 Aligned_cols=157 Identities=11% Similarity=0.038 Sum_probs=90.2
Q ss_pred HHHhhccCCCCCccccccc-cccEEEEEcCCCcchHHHHHHH-HHHHhccc---ceEEEEEeeecccccchhccCCCCCC
Q 001078 30 INEILMPVFPGQLRYIRKN-LFHAVYVLDPATVCGLEVIDMI-MSLYENHF---PLRFGVILYSSKFIKSIEINGGELHS 104 (1162)
Q Consensus 30 L~~LLrp~~pGqlp~VRRN-l~nlV~vvDps~~~~l~~l~~i-~~~~~~~i---PvR~GlVp~~~~~~~~~~~~~g~~~~ 104 (1162)
-.+++.+. ||....=..| =..+|.+.|+..+...++-..+ ..+.++-+ =+||=+.++.-+
T Consensus 21 ~~~~~~~~-~~~~~~G~~~A~vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~~~p~~-------------- 85 (226)
T 3f4s_A 21 SNELLLPL-PNDKLLGDPKAPILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRHFPLD-------------- 85 (226)
T ss_dssp HHHHTSCC-TTCCEESCTTCSEEEEEEECTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEEECCCS--------------
T ss_pred HHHHhcCC-CCCCccCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEEeCCCC--------------
Confidence 35677775 5542211222 3578999999999998865443 33332211 255555554321
Q ss_pred CCccCCCCCCCchHHHHHHHHHHHHHhhChHHHHHHHHHHHHhhhccCCCCCCchhhhhhHHhHhHhhccCCCCCCChhh
Q 001078 105 PVAEDDSPVNEDISSLIIRLFLFIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDM 184 (1162)
Q Consensus 105 ~~~~~~~~~~~~~s~~~ar~f~~i~~~~g~~~Al~FL~~~~~~~~~~~~~~~~~~~~~~~v~~af~~~~~~~~~~~~~~~ 184 (1162)
..|...+++++.+ .+......|...++.....-. .....+.+.+.... +.+ .-..+.
T Consensus 86 -----------~~s~~Aa~aa~aa---~~~~~f~~~~~aLF~~q~~~~---~~~~~~~~~L~~iA-~~~-----Gld~~~ 142 (226)
T 3f4s_A 86 -----------YRGLKAAMLSHCY---EKQEDYFNFNKAVFNSIDSWN---YYNLSDLTLLQRIA-ALS-----NLKQDA 142 (226)
T ss_dssp -----------HHHHHHHHHGGGC---CSHHHHHHHHHHHHHTGGGSC---SSSTTCCHHHHHHH-HHT-----TCCHHH
T ss_pred -----------hhHHHHHHHHHHh---hChHHHHHHHHHHHHhCHhhc---ccccCcHHHHHHHH-HHc-----CCCHHH
Confidence 3355555655543 244566777777776432110 00011222333222 211 223346
Q ss_pred hhhhhcccchhhhHHHHHHHHHH-hCCCcCCceeeE---eceecc
Q 001078 185 LLKLEKEKTFMDQSQESSMFVFK-LGLTKLKCCLLM---NGLVSE 225 (1162)
Q Consensus 185 ~~~l~~~~~~d~~~~~~~~f~~R-lgl~~~~p~vlv---NGv~~~ 225 (1162)
+...+.+.++...+....+..++ +|+.+ .|.++| ||..+.
T Consensus 143 ~~~~l~s~~~~~~v~~~~~~a~~~~GV~G-tPtfvv~~~nG~~~~ 186 (226)
T 3f4s_A 143 FNQCINDKKIMDKIVNDKSLAINKLGITA-VPIFFIKLNDDKSYI 186 (226)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHCCCS-SCEEEEEECCTTCCC
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHcCCCc-CCEEEEEcCCCEEee
Confidence 77777888888888888888888 99955 699999 999875
No 34
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=70.45 E-value=14 Score=37.54 Aligned_cols=141 Identities=8% Similarity=0.080 Sum_probs=76.6
Q ss_pred cccEEEEEcCCCcchHHHHHHHHHHHhcccceEEEEEeeecccccchhccCCCCCCCCccCCCCCCCchHHHHHHHHHHH
Q 001078 49 LFHAVYVLDPATVCGLEVIDMIMSLYENHFPLRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLFLFI 128 (1162)
Q Consensus 49 l~nlV~vvDps~~~~l~~l~~i~~~~~~~iPvR~GlVp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~s~~~ar~f~~i 128 (1162)
--.+|-+.|+..+-...+-..+..+.+.. -++|..+|+.-. ..+...+|+++-.
T Consensus 23 ~~~vvef~d~~Cp~C~~~~~~~~~~~~~~-~v~~~~~p~~~~-------------------------~~~~~aa~a~~Aa 76 (185)
T 3feu_A 23 MAPVTEVFALSCGHCRNMENFLPVISQEA-GTDIGKMHITFN-------------------------QSAHIASMFYYAA 76 (185)
T ss_dssp CCSEEEEECTTCHHHHHHGGGHHHHHHHH-TSCCEEEECCSS-------------------------SHHHHHHHHHHHH
T ss_pred CCEEEEEECCCChhHHHhhHHHHHHHHHh-CCeEEEEeccCC-------------------------ccchHHHHHHHHH
Confidence 34799999999998887555555554433 467778887532 3345567777655
Q ss_pred HHhhChHHHHHHHHHHHHhhhccCCCCCCchhhhhhHHhHhHhhccCCCCCCChhhhhhhhcccchhhhHHHHHHHHHHh
Q 001078 129 KESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQSQESSMFVFKL 208 (1162)
Q Consensus 129 ~~~~g~~~Al~FL~~~~~~~~~~~~~~~~~~~~~~~v~~af~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~f~~Rl 208 (1162)
....|......|...++....... ...+..+.+.+...+ .. .+-...+.++..+.+ +..+.+....+..+++
T Consensus 77 ~~q~g~~~~~~~~~~lf~a~~~~~--~~~~~~~~~~L~~~a-~~----~Gl~d~~~~~~~~~~-~~~~~v~~~~~~a~~~ 148 (185)
T 3feu_A 77 EMQVDGAPDHAFMEDLFAATQMGE--GTTLTEQQEAYSKAF-TS----RGLVSPYDFNEEQRD-TLIKKVDNAKMLSEKS 148 (185)
T ss_dssp HTTSSSSCCHHHHHHHHHHHTCCT--TSCHHHHHHHHHHHH-HT----TTCCCGGGCCHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHhCCchHHHHHHHHHHHHHHhc--cCCCCCCHHHHHHHH-HH----cCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHc
Confidence 434453111223333333211100 000123444444444 22 121122233333333 3445677778888999
Q ss_pred CCCcCCceeeEeceec
Q 001078 209 GLTKLKCCLLMNGLVS 224 (1162)
Q Consensus 209 gl~~~~p~vlvNGv~~ 224 (1162)
|+.+ .|.++|||...
T Consensus 149 gv~G-tPtfvvng~~~ 163 (185)
T 3feu_A 149 GISS-VPTFVVNGKYN 163 (185)
T ss_dssp TCCS-SSEEEETTTEE
T ss_pred CCCc-cCEEEECCEEE
Confidence 9965 59999999974
No 35
>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2}
Probab=67.57 E-value=39 Score=34.73 Aligned_cols=99 Identities=13% Similarity=0.070 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHhhChHHHHHHHHHHHHhhhccCCCCCCchhhhhhHHhHhHhhccCCCCCCChhhhhhhhcccchhhh
Q 001078 118 SSLIIRLFLFIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQ 197 (1162)
Q Consensus 118 s~~~ar~f~~i~~~~g~~~Al~FL~~~~~~~~~~~~~~~~~~~~~~~v~~af~~~~~~~~~~~~~~~~~~l~~~~~~d~~ 197 (1162)
+....|++.+..+. |......|+..++...-.. ..+..+.+.+.+.. +++ .-..+.+...+.++++.+.
T Consensus 90 t~~a~r~~~~a~~~-g~~~~~~~~~alf~a~~~~----g~~i~~~~~L~~~a-~~~-----Gld~~~~~~~~~s~~~~~~ 158 (202)
T 3fz5_A 90 ALAATRAFYWIEAQ-SPDAATAFAQRVFDLYFSD----RLDTASPEAVSRLG-PEV-----GLEPEALLAGIADPALKET 158 (202)
T ss_dssp CHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHTTT----CCCTTCHHHHHTTH-HHH-----TCCHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHhh-CchHHHHHHHHHHHHHHhc----CCCCCCHHHHHHHH-HHc-----CCCHHHHHHHhcCHHHHHH
Confidence 45567777777544 5455666766666532110 01112233333332 221 1233456667778888888
Q ss_pred HHHHHHHHHHhCCCcCCceeeEeceeccCch
Q 001078 198 SQESSMFVFKLGLTKLKCCLLMNGLVSESSE 228 (1162)
Q Consensus 198 ~~~~~~f~~Rlgl~~~~p~vlvNGv~~~~~~ 228 (1162)
+++..+-..++|+.+ .|.++|||..+.-.+
T Consensus 159 v~~~~~~a~~~Gv~G-vPtfvv~g~~~~G~~ 188 (202)
T 3fz5_A 159 VRKIGEDAVARGIFG-SPFFLVDDEPFWGWD 188 (202)
T ss_dssp HHHHHHHHHHTTCCS-SSEEEETTEEEESGG
T ss_pred HHHHHHHHHHCCCCc-CCEEEECCEEEecCC
Confidence 888888889999965 599999999876444
No 36
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=54.64 E-value=1.7e+02 Score=28.95 Aligned_cols=159 Identities=9% Similarity=0.025 Sum_probs=82.1
Q ss_pred CceEEEEEeeCCChhhHHHHHHHHHHHhcCCCceEEEEEecCCCCCCCchhHHHHHHHHHhhcccchhhHHHHHHHHhhh
Q 001078 314 KPVTHLLAVDVTSKKGMKLLHEGIRFLIGGSNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQLCSF 393 (1162)
Q Consensus 314 ~~~t~wvv~D~~~~~g~~l~~~al~~l~~~~~~~Rv~~v~n~~~~~~~~~~~~~~~i~aa~~~~~~~~~~~~~l~~l~~~ 393 (1162)
.++++.+..|+.++-........-+.+++....+++-.++-+-.. ......+++.++.. .. +...+...+.+.
T Consensus 25 a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~---~s~~a~~a~~~a~~-~~---~~~~~~~~lf~~ 97 (193)
T 2rem_A 25 GKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPAVFGG---VWDPFARAYLAADV-LG---VAKRSHTAMFEA 97 (193)
T ss_dssp TCEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTEEEEEEECCCST---THHHHHHHHHHHHH-TT---CHHHHHHHHHHH
T ss_pred CCeEEEEEECCCChhHhhhhHHHHHHHHhcCCceEEEEeCcccCC---CcHHHHHHHHHHHH-cC---cHHHHHHHHHHH
Confidence 357888899999998887765544444433345666555443211 12233344443321 12 223343444332
Q ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhcCCChHhHhhccCccchhhHHHHHHHHHHHHHHHhCCCCCCcEEEEcCEEe
Q 001078 394 YERTYLLASSATADSTQAFIDKVCEFAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNGRVT 473 (1162)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~NGR~i 473 (1162)
....... .....+ .+.+.++++..|++.+.+...+.+-... ..+..... ..+.+|+. |.+.+++||+++
T Consensus 98 ~~~~~~~-----~~~~~~-~~~l~~~a~~~Gld~~~~~~~~~~~~~~---~~v~~~~~-~a~~~gv~-gtPt~ving~~~ 166 (193)
T 2rem_A 98 IHEKGSV-----PIQNVG-PDELAVFYAGYGVQPDRFVATFNGPEVE---KRFQAARA-YALKVRPV-GTPTIVVNGRYM 166 (193)
T ss_dssp HHTTCCS-----CSTTCC-HHHHHHHHHTTTCCHHHHHHHHTSHHHH---HHHHHHHH-HHHHHCCS-SSSEEEETTTEE
T ss_pred HHHhccc-----CcCCCC-HHHHHHHHHHcCCCHHHHHHHHhChHHH---HHHHHHHH-HHHHhCCC-CCCeEEECCEEE
Confidence 1110000 000000 1334556667788888777666542221 11222222 34566876 889999999987
Q ss_pred cCCCCCCCChhhHHHHHHHHH
Q 001078 474 FPIDESTFLSHDLSLLESVEF 494 (1162)
Q Consensus 474 ~~~~~~~~~~~d~~~l~~~e~ 494 (1162)
.- +. +.++|..+++...
T Consensus 167 ~~--g~--~~~~l~~~i~~~~ 183 (193)
T 2rem_A 167 VT--GH--DFEDTLRITDYLV 183 (193)
T ss_dssp EC--CS--SHHHHHHHHHHHH
T ss_pred ec--CC--CHHHHHHHHHHHH
Confidence 32 22 6778877776544
No 37
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Probab=53.73 E-value=90 Score=31.01 Aligned_cols=139 Identities=9% Similarity=-0.021 Sum_probs=76.3
Q ss_pred cEEEEEcCCCcchHHHHHHH-HHHHhc-ccceEEEEEeeecccccchhccCCCCCCCCccCCCCCCCchHHHHHHHHHHH
Q 001078 51 HAVYVLDPATVCGLEVIDMI-MSLYEN-HFPLRFGVILYSSKFIKSIEINGGELHSPVAEDDSPVNEDISSLIIRLFLFI 128 (1162)
Q Consensus 51 nlV~vvDps~~~~l~~l~~i-~~~~~~-~iPvR~GlVp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~s~~~ar~f~~i 128 (1162)
.+|-+.|+..+-....-..+ ..+.+. +.-+||=.+++... + ..+...+++++.+
T Consensus 20 ~~ief~d~~CP~C~~~~~~l~~~l~~~~~~~v~~~~~~l~~~---------~---------------~~~~~~~~~~~~~ 75 (195)
T 3c7m_A 20 TLIKVFSYACPFCYKYDKAVTGPVSEKVKDIVAFTPFHLETK---------G---------------EYGKQASEVFAVL 75 (195)
T ss_dssp EEEEEECTTCHHHHHHHHHTHHHHHHHTTTTCEEEEEECTTS---------S---------------TTHHHHHHHHHHH
T ss_pred EEEEEEeCcCcchhhCcHHHHHHHHHhCCCceEEEEEecCcc---------c---------------cccHHHHHHHHHH
Confidence 46778899999998776666 555432 33467766665431 1 2234455665555
Q ss_pred HHh---hChH------HHHHHHHHHHHhhh-ccCCCCCCchhhhhhHHhHh---HhhccCCCCCCChhhhhhhhcccchh
Q 001078 129 KES---HGTQ------TAFQFLSNVNRLRM-ESADSADDDALEIHHVEGAF---VETILPKAKTPPQDMLLKLEKEKTFM 195 (1162)
Q Consensus 129 ~~~---~g~~------~Al~FL~~~~~~~~-~~~~~~~~~~~~~~~v~~af---~~~~~~~~~~~~~~~~~~l~~~~~~d 195 (1162)
... .|.. ....|+..++...- .+.+ ..+.+.+...+ .+.+ .-..+.+...+.+.++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~-----~~~~~~l~~~~~~~a~~~-----Gld~~~~~~~~~~~~~~ 145 (195)
T 3c7m_A 76 INKDKAAGISLFDANSQFKKAKFAYYAAYHDKKER-----WSDGKDPAAFIKTGLDAA-----GMSQADFEAALKEPAVQ 145 (195)
T ss_dssp HHHHHHTTCCTTSTTCHHHHHHHHHHHHHHTSCCC-----TTTTTCHHHHHHHHHHHH-----TCCHHHHHHHHTSHHHH
T ss_pred HHhhhhcCCCchhHHHHHHHHHHHHHHHHHhcCCC-----CCCHHHHHHHHHhHHHHc-----CCCHHHHHHHHcChHHH
Confidence 432 2211 22345555443221 1111 01122222220 1211 12334566667777777
Q ss_pred hhHHHHHHHHHHhCCCcCCceeeEeceec
Q 001078 196 DQSQESSMFVFKLGLTKLKCCLLMNGLVS 224 (1162)
Q Consensus 196 ~~~~~~~~f~~Rlgl~~~~p~vlvNGv~~ 224 (1162)
..+....+..+++|+.+ .|.++|||...
T Consensus 146 ~~v~~~~~~a~~~gv~g-tPt~~ing~~~ 173 (195)
T 3c7m_A 146 ETLEKWKASYDVAKIQG-VPAYVVNGKYL 173 (195)
T ss_dssp HHHHHGGGHHHHHHHHC-SSEEEETTTEE
T ss_pred HHHHHHHHHHHHcCCCc-cCEEEECCEEE
Confidence 78888788888999954 59999999864
No 38
>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*
Probab=49.93 E-value=2.1e+02 Score=28.85 Aligned_cols=46 Identities=2% Similarity=-0.001 Sum_probs=35.9
Q ss_pred hhhhhhhhcccchhhhHHHHHHHHHHhCCCcCCceeeEeceeccCch
Q 001078 182 QDMLLKLEKEKTFMDQSQESSMFVFKLGLTKLKCCLLMNGLVSESSE 228 (1162)
Q Consensus 182 ~~~~~~l~~~~~~d~~~~~~~~f~~Rlgl~~~~p~vlvNGv~~~~~~ 228 (1162)
.+.+...+.+.++.+.+++..+...++|+.+ .|.++|||..+.-.+
T Consensus 137 ~~~~~~~~~s~~~~~~v~~~~~~a~~~Gv~G-~Ptfvi~g~~~~G~~ 182 (203)
T 2imf_A 137 RSAFEHFLSSNAATERYDEQTHAAIERKVFG-VPTMFLGDEMWWGND 182 (203)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHTTCCS-SSEEEETTEEEESGG
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHCCCCc-CCEEEECCEEEECCC
Confidence 3456667777888888888888889999965 599999999775433
No 39
>4hv0_A AVTR; ribbon-helix-helix, DNA, transcription, viral protein; 2.60A {Acidianus filamentous virus 6}
Probab=46.99 E-value=96 Score=28.78 Aligned_cols=57 Identities=19% Similarity=0.290 Sum_probs=42.6
Q ss_pred HHHHHHHHhCCC----------CCCcEEEEcCEEe-cCCCCCCCChhhHHHHHHHHHHhhhHHHHHHHHHh
Q 001078 449 VVQFLHRQLGVE----------SGANAVITNGRVT-FPIDESTFLSHDLSLLESVEFKHRIKHIWEIIEEV 508 (1162)
Q Consensus 449 ~~~~~~~~l~l~----------~~~~~~~~NGR~i-~~~~~~~~~~~d~~~l~~~e~~~~~~~~~~~l~~~ 508 (1162)
...++.+.|++. ++.+++++||.-+ ++. .-+. ..=+.|++-|.++|.-.+.+.|++.
T Consensus 28 ~RkLL~EyL~LeE~t~~ykr~~~~~~~i~v~~k~y~r~~--~k~~-k~ne~~ik~elkkrg~s~n~~lk~~ 95 (106)
T 4hv0_A 28 IRKILKEYFGIEDRTRDYKRQDLEGSYIIVNGKKYYRIN--CKLE-KRNEILVKLELKKRGTTLNRFLKEM 95 (106)
T ss_dssp HHHHHHHHHTCCCCCC-------CCCEEEETTEEEEEEC--CCCC-HHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHhccccchhhHHhhCcCCcEEEECCEEEEEEE--EEee-ccchhhHHHHHHHcCCcHHHHHHHh
Confidence 345677777776 4578999999876 664 2333 5779999999999988888888764
No 40
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=44.97 E-value=1.8e+02 Score=28.38 Aligned_cols=30 Identities=0% Similarity=-0.116 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHhCCCcCCceeeEeceeccC
Q 001078 196 DQSQESSMFVFKLGLTKLKCCLLMNGLVSES 226 (1162)
Q Consensus 196 ~~~~~~~~f~~Rlgl~~~~p~vlvNGv~~~~ 226 (1162)
..+++..+..+++|+.+ .|.++|||..+..
T Consensus 133 ~~~~~~~~~a~~~gv~g-tPt~vvng~~~~G 162 (175)
T 1z6m_A 133 TLVSAVIAEANAAHIQF-VPTIIIGEYIFDE 162 (175)
T ss_dssp HHHHHHHHHHHHHTCCS-SCEEEETTEEECT
T ss_pred HHHHHHHHHHHHcCCCC-cCeEEECCEEccC
Confidence 34555667788999955 5999999998853
No 41
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=43.80 E-value=2.5e+02 Score=27.77 Aligned_cols=156 Identities=8% Similarity=-0.104 Sum_probs=75.5
Q ss_pred CceEEEEEeeCCChhhHHHHHHHHHHHhcCCCceEEEEEecCCCCCCCchhHHHHHHHHHhhcccchhhHHHHHHHHhhh
Q 001078 314 KPVTHLLAVDVTSKKGMKLLHEGIRFLIGGSNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQLCSF 393 (1162)
Q Consensus 314 ~~~t~wvv~D~~~~~g~~l~~~al~~l~~~~~~~Rv~~v~n~~~~~~~~~~~~~~~i~aa~~~~~~~~~~~~~l~~l~~~ 393 (1162)
.++++.+..|+.++-........-+.+++....+++-.++-+-. ..+....+++.++. .. ++...+...+...
T Consensus 22 ~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~---~~s~~aa~a~~aa~-~~---~~~~~~~~~lf~~ 94 (195)
T 2znm_A 22 GKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHVVWQ---PEMLGLARMAAAVN-LS---GLKYQANPAVFKA 94 (195)
T ss_dssp SSEEEEEEECTTSCCTTSSCHHHHHHHHHSCTTEEEEEEECCCS---GGGHHHHHHHHHHH-HH---TCHHHHHHHHHHH
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHHCCCceEEEEeccccC---cccHHHHHHHHHHH-Hc---CcHHHHHHHHHHH
Confidence 35788888899998776554333333333333455544443211 11223344444332 11 1223343333331
Q ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhc-CCChHhHhhccCccchhhHHHHHHHHHHHHHHHhCCCCCCcEEEEcCEE
Q 001078 394 YERTYLLASSATADSTQAFIDKVCEFAEAN-GLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNGRV 472 (1162)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~NGR~ 472 (1162)
...+ ...+.+ .+.+.++++.. +++.+.+...+.+-.... .+.... -..+.+|+. |.+.+++||++
T Consensus 95 ~~~~--------~~~~~~-~~~l~~~a~~~~Gld~~~~~~~~~~~~~~~---~v~~~~-~~a~~~gv~-gtPt~ving~~ 160 (195)
T 2znm_A 95 VYEQ--------KIRLEN-RSVAGKWALSQKGFDGKKLMRAYDSPEAAA---AALKMQ-KLTEQYRID-STPTVIVGGKY 160 (195)
T ss_dssp HHHC--------SSCTTS-HHHHHHHHHTCSSSCHHHHHHHHTSHHHHH---HHHHHH-HHHHHTTCC-SSSEEEETTTE
T ss_pred HHHh--------CCCCCC-HHHHHHHHHHcCCCCHHHHHHHhcCHHHHH---HHHHHH-HHHHHcCCC-CCCeEEECCEE
Confidence 1110 000001 13345566667 888877776654422221 122222 234567885 88999999997
Q ss_pred ecCCCCCCCChhhHHHHHHHH
Q 001078 473 TFPIDESTFLSHDLSLLESVE 493 (1162)
Q Consensus 473 i~~~~~~~~~~~d~~~l~~~e 493 (1162)
+.. +. .+.++|..+++..
T Consensus 161 ~~~--g~-~~~~~l~~~i~~~ 178 (195)
T 2znm_A 161 RVI--FN-NGFDGGVHTIKEL 178 (195)
T ss_dssp EEC--CC-SHHHHHHHHHHHH
T ss_pred EEc--CC-CCHHHHHHHHHHH
Confidence 421 11 4556666665443
No 42
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=42.88 E-value=2.8e+02 Score=27.97 Aligned_cols=94 Identities=10% Similarity=0.097 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHhhChHHHHHHHHHHHHhhhccCCCCCCchhhhhhHHhHhHhhccCCCCCCChhhhhhhhcccchhhh
Q 001078 118 SSLIIRLFLFIKESHGTQTAFQFLSNVNRLRMESADSADDDALEIHHVEGAFVETILPKAKTPPQDMLLKLEKEKTFMDQ 197 (1162)
Q Consensus 118 s~~~ar~f~~i~~~~g~~~Al~FL~~~~~~~~~~~~~~~~~~~~~~~v~~af~~~~~~~~~~~~~~~~~~l~~~~~~d~~ 197 (1162)
+...++++.+..+. |+.....|+..++...-.. ..+..+.+.+.+.. +.+ .-..+.+...+.+.++...
T Consensus 93 s~~a~r~~~~a~~~-~~~~~~~~~~~lf~a~~~~----~~~~~~~~~l~~~a-~~~-----Gld~~~~~~~~~~~~~~~~ 161 (216)
T 2in3_A 93 TEPACRGVVSVSLI-EPEKVFPFFAAIQRAFYVG----QEDVAQLAILKKLA-VDL-----GIPESRFTPVFQSDEAKQR 161 (216)
T ss_dssp CHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHTT----CCCTTSHHHHHHHH-HHT-----TCCHHHHHHHHHSHHHHHH
T ss_pred cHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHhc----CCCCCCHHHHHHHH-HHc-----CCCHHHHHHHhcchHHHHH
Confidence 45566777666543 3334556666665432110 01111223333332 211 1233456667777788888
Q ss_pred HHHHHHHHHHhCCCcCCceeeE--ecee
Q 001078 198 SQESSMFVFKLGLTKLKCCLLM--NGLV 223 (1162)
Q Consensus 198 ~~~~~~f~~Rlgl~~~~p~vlv--NGv~ 223 (1162)
+.+..+...++|+.+ .|.+++ ||..
T Consensus 162 v~~~~~~a~~~gv~g-~Pt~~i~~~G~~ 188 (216)
T 2in3_A 162 TLAGFQRVAQWGISG-FPALVVESGTDR 188 (216)
T ss_dssp HHHHHHHHHHTTCCS-SSEEEEEETTEE
T ss_pred HHHHHHHHHHcCCcc-cceEEEEECCEE
Confidence 888888889999965 588888 9986
No 43
>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}
Probab=40.47 E-value=2.3e+02 Score=29.84 Aligned_cols=40 Identities=10% Similarity=0.158 Sum_probs=32.4
Q ss_pred hhhhhhhhcc-cchhhhHHHHHHHHHHhCCCcCCceeeEece
Q 001078 182 QDMLLKLEKE-KTFMDQSQESSMFVFKLGLTKLKCCLLMNGL 222 (1162)
Q Consensus 182 ~~~~~~l~~~-~~~d~~~~~~~~f~~Rlgl~~~~p~vlvNGv 222 (1162)
.+.+...+.+ .++.+.+++..+...++|+.+ .|.++|||.
T Consensus 152 ~~~~~~~l~s~~~~~~~v~~~~~~a~~~Gv~G-vPtfvv~g~ 192 (239)
T 3gl5_A 152 AEEVRAVLADPAAYADEVRADEREAAQLGATG-VPFFVLDRA 192 (239)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHTTCCS-SSEEEETTT
T ss_pred HHHHHHHHcCcHhHHHHHHHHHHHHHHCCCCe-eCeEEECCc
Confidence 4456777778 888888888888888999965 699999997
No 44
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=33.46 E-value=1.5e+02 Score=30.64 Aligned_cols=107 Identities=11% Similarity=0.174 Sum_probs=61.8
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCcccccccccccHH
Q 001078 855 INIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRII 934 (1162)
Q Consensus 855 InIf~vasg~~Y~~~l~v~I~SIl~nt~~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r~~ 934 (1162)
|-|...+.+. +..+.-+|.||+..+-.++.+.|+.+.-++...+.+..+++ ...+.++....+...... ......
T Consensus 3 vSViIp~yn~--~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~--~~~i~~i~~~~~~~~~~~-~n~G~~ 77 (255)
T 1qg8_A 3 VSVIMTSYNK--SDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLN--DNRVRFYQSDISGVKERT-EKTRYA 77 (255)
T ss_dssp EEEEEEESSC--TTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGG--STTEEEEECCCCSHHHHH-SSCHHH
T ss_pred EEEEEEcCCC--HHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhh--cCCEEEEecccccccccc-cccCHH
Confidence 4455554443 46778899999987766789999998888887777777655 334555544311100000 011111
Q ss_pred HHHHHHhhcccCCCCCCeEEEEeCCeeecCC-chHHH
Q 001078 935 WAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELY 970 (1162)
Q Consensus 935 ~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~D-L~eL~ 970 (1162)
.+.-. -+. . ..-+-|++||+|.++..| |..+.
T Consensus 78 ~a~N~-gi~-~--a~g~~i~~lD~Dd~~~~~~l~~~~ 110 (255)
T 1qg8_A 78 ALINQ-AIE-M--AEGEYITYATDDNIYMPDRLLKMV 110 (255)
T ss_dssp HHHHH-HHH-H--CCCSEEEEEETTEEECTTHHHHHH
T ss_pred HHHHH-HHH-H--cCCCEEEEeCCCCccChHHHHHHH
Confidence 11111 111 1 146899999999998655 44454
No 45
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=33.34 E-value=3.2e+02 Score=26.58 Aligned_cols=119 Identities=10% Similarity=-0.042 Sum_probs=0.0
Q ss_pred ceEEEEEeeCCChhhHHHHHHHHHHHhcCCCceEEEEEecCCCCCCCchhHHHHHHHHHhhcccchhhHHHHHHHHhhhh
Q 001078 315 PVTHLLAVDVTSKKGMKLLHEGIRFLIGGSNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQLCSFY 394 (1162)
Q Consensus 315 ~~t~wvv~D~~~~~g~~l~~~al~~l~~~~~~~Rv~~v~n~~~~~~~~~~~~~~~i~aa~~~~~~~~~~~~~l~~l~~~~ 394 (1162)
++|+.+.+|+.++-.+++....-++ .++||-+++-|-......+..-+.+++++ ....++++.++...
T Consensus 15 ~~~vv~f~D~~Cp~C~~~~~~l~~l-----~~v~v~~~~~P~~~~~~~s~~~a~a~~ca-------~d~~~a~~~~~~~g 82 (147)
T 3gv1_A 15 KLKVAVFSDPDCPFCKRLEHEFEKM-----TDVTVYSFMMPIAGLHPDAARKAQILWCQ-------PDRAKAWTDWMRKG 82 (147)
T ss_dssp CEEEEEEECTTCHHHHHHHHHHTTC-----CSEEEEEEECCCTTTCTTHHHHHHHHHTS-------SSHHHHHHHHHHHC
T ss_pred CEEEEEEECCCChhHHHHHHHHhhc-----CceEEEEEEccccccChhHHHHHHHHHcC-------CCHHHHHHHHHhCC
Q ss_pred hhhhhhcccccccchHHHHHHHHHHHHhcCCChHhHhhccCccchhhHHHHHHHHHHHHHHHhCCCCCCcEEEE-cCEEe
Q 001078 395 ERTYLLASSATADSTQAFIDKVCEFAEANGLSSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVIT-NGRVT 473 (1162)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~-NGR~i 473 (1162)
.................. +.+.+|+. |.+++++ ||+.+
T Consensus 83 ~~~~~~~~~~~~v~~~~~----------------------------------------la~~~gI~-gtPt~vi~nG~~i 121 (147)
T 3gv1_A 83 KFPVGGSICDNPVAETTS----------------------------------------LGEQFGFN-GTPTLVFPNGRTQ 121 (147)
T ss_dssp CCCTTCCCCSCSHHHHHH----------------------------------------HHHHTTCC-SSCEEECTTSCEE
T ss_pred CCCCccHHHHHHHHHHHH----------------------------------------HHHHhCCC-ccCEEEEECCEEe
Q ss_pred -cCCCCCCCChhhHHHHHH
Q 001078 474 -FPIDESTFLSHDLSLLES 491 (1162)
Q Consensus 474 -~~~~~~~~~~~d~~~l~~ 491 (1162)
.. .+.++|+.+++
T Consensus 122 ~G~-----~~~~~l~~~i~ 135 (147)
T 3gv1_A 122 SGY-----SPMPQLEEIIR 135 (147)
T ss_dssp ESC-----CCTTHHHHHHH
T ss_pred eCC-----CCHHHHHHHHH
No 46
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=29.61 E-value=19 Score=31.59 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.2
Q ss_pred HHHHhCCCCCCcEEEEcCEEecCC
Q 001078 453 LHRQLGVESGANAVITNGRVTFPI 476 (1162)
Q Consensus 453 ~~~~l~l~~~~~~~~~NGR~i~~~ 476 (1162)
+.+.||+++....+.+|||+++.+
T Consensus 26 LL~~Lgl~~~~VvV~vNG~~v~~d 49 (74)
T 2l32_A 26 LVRAVDLSPHEVTVLVDGRPVPED 49 (74)
T ss_dssp HHHTTCCCSSCCCEECCCCCCCTT
T ss_pred HHHHcCCCcceEEEEECCEECCHH
Confidence 566789999999999999999875
No 47
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=25.44 E-value=2.7e+02 Score=28.17 Aligned_cols=99 Identities=21% Similarity=0.279 Sum_probs=62.3
Q ss_pred eEEEEEecCcchHHHHHHHHHHHHHcCCCCeEEEEEeCCCChhHHHHHHHHHHhcCcEEEEEEecCCcccccccccccHH
Q 001078 855 INIFSIASGHLYERFLKIMILSVLKNTCRPVKFWFIKNYLSPQFKDVIPHMAQEYGFEYELITYKWPTWLHKQKEKQRII 934 (1162)
Q Consensus 855 InIf~vasg~~Y~~~l~v~I~SIl~nt~~~v~f~Il~~~lS~~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~~~r~~ 934 (1162)
|-|...+.+. +..+.-+|.||+..+-.++.+.|+.+.-++...+.+..+++++. .+.++. . +. . ...
T Consensus 7 vsViIp~yn~--~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~-~i~~i~-~-~n----~----G~~ 73 (240)
T 3bcv_A 7 VSVIVPIYNV--EKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYP-NIKVIH-K-KN----A----GLG 73 (240)
T ss_dssp EEEEEEESSC--TTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCS-SEEEEE-C-CC----C----CHH
T ss_pred EEEEEecCCC--HHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCC-CEEEEE-C-CC----C----ChH
Confidence 6666665554 46678899999987766789999998888888888888877653 244443 1 11 1 111
Q ss_pred HHHHHHhhcccCCCCCCeEEEEeCCeeecCC-chHHH
Q 001078 935 WAYKILFLDVIFPLSLEKVIFVDADQVVRAD-MGELY 970 (1162)
Q Consensus 935 ~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~D-L~eL~ 970 (1162)
.+. -.-+.. - .-+-|++||+|.++..+ |..|.
T Consensus 74 ~a~-N~g~~~-a--~g~~i~~lD~Dd~~~~~~l~~l~ 106 (240)
T 3bcv_A 74 MAC-NSGLDV-A--TGEYVAFCDSDDYVDSDMYMTMY 106 (240)
T ss_dssp HHH-HHHHHH-C--CSSEEEECCTTCCCCTTHHHHHH
T ss_pred HHH-HHHHHH-c--CCCEEEEECCCCcCCHHHHHHHH
Confidence 111 011111 1 35899999999988655 44444
No 48
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=24.96 E-value=2.5e+02 Score=32.34 Aligned_cols=103 Identities=15% Similarity=0.116 Sum_probs=63.9
Q ss_pred eeEEEEEecCcchH-HHHHHHHHHHHHcCCCC--eEEEEEeCCCCh-hHHHHHHHHHHhcCcEEEEEEecCCcccccccc
Q 001078 854 TINIFSIASGHLYE-RFLKIMILSVLKNTCRP--VKFWFIKNYLSP-QFKDVIPHMAQEYGFEYELITYKWPTWLHKQKE 929 (1162)
Q Consensus 854 ~InIf~vasg~~Y~-~~l~v~I~SIl~nt~~~--v~f~Il~~~lS~-~~k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~ 929 (1162)
.|-|..++.+. + ..+.-+|.||+..+... +.+.|+++.=++ +..+.+..+.+++...++++... . +
T Consensus 30 ~vSVIIp~yN~--~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~~--~---n--- 99 (472)
T 1xhb_A 30 TTSVVIVFHNE--AWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRME--Q---R--- 99 (472)
T ss_dssp CEEEEEEESSC--CHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECS--S---C---
T ss_pred CeEEEEEeCCC--CHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEECC--C---C---
Confidence 46666665543 4 67888999999987644 578888876665 47788888877766456665442 1 0
Q ss_pred cccHHHHHHHHhhcccCCCCCCeEEEEeCCeeecC-CchHHHh
Q 001078 930 KQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRA-DMGELYD 971 (1162)
Q Consensus 930 ~~r~~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~-DL~eL~~ 971 (1162)
.....+.-+ -+.. ..-+-|++||+|.++.. -|.+|..
T Consensus 100 -~G~~~a~N~-g~~~---A~gd~i~flD~D~~~~p~~L~~ll~ 137 (472)
T 1xhb_A 100 -SGLIRARLK-GAAV---SRGQVITFLDAHCECTAGWLEPLLA 137 (472)
T ss_dssp -CCHHHHHHH-HHHH---CCSSEEEEEESSEEECTTCHHHHHH
T ss_pred -CChHHHHHH-HHHh---ccCCeEEEECCCeEeCccHHHHHHH
Confidence 111111110 1111 13678999999998864 4566664
No 49
>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13
Probab=24.12 E-value=5.9e+02 Score=26.00 Aligned_cols=160 Identities=8% Similarity=-0.033 Sum_probs=80.6
Q ss_pred cEEEEEcCCCcchHHHHHHHHHHHhcccceEEEEEeeecccccchhccCCCCC-CC-Ccc--------------CC--CC
Q 001078 51 HAVYVLDPATVCGLEVIDMIMSLYENHFPLRFGVILYSSKFIKSIEINGGELH-SP-VAE--------------DD--SP 112 (1162)
Q Consensus 51 nlV~vvDps~~~~l~~l~~i~~~~~~~iPvR~GlVp~~~~~~~~~~~~~g~~~-~~-~~~--------------~~--~~ 112 (1162)
+++++.|+.++-..-....+..+.++ ..+++=+.|+.=. +.... .|..+ .. .++ .| ..
T Consensus 7 ~I~~~~D~~CP~Cy~~~~~l~~l~~~-~~~~v~~~p~~L~--~~~~~-~g~~~~~~~~~~~~~~~~~~~r~a~~~G~~~~ 82 (226)
T 1r4w_A 7 VLELFYDVLSPYSWLGFEVLCRYQHL-WNIKLKLRPALLA--GIMKD-SGNQPPAMVPHKGQYILKEIPLLKQLFQVPMS 82 (226)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHTTT-SSEEEEEEECCHH--HHHHH-TTCCCTTSSHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHH-cCCeEEEEeeecc--cchhc-cCCCCcccChHHHHHHHHHHHHHHHHhCCCCC
Confidence 58899999999998776777776543 3566655554200 00010 11000 00 000 00 00
Q ss_pred --CC--C----chHHHHHHHHHHHHHhhChHHHHHHHHHHHHhhh-ccCCCCCCchhhhhhHHhHhHhhccCCCCCC--C
Q 001078 113 --VN--E----DISSLIIRLFLFIKESHGTQTAFQFLSNVNRLRM-ESADSADDDALEIHHVEGAFVETILPKAKTP--P 181 (1162)
Q Consensus 113 --~~--~----~~s~~~ar~f~~i~~~~g~~~Al~FL~~~~~~~~-~~~~~~~~~~~~~~~v~~af~~~~~~~~~~~--~ 181 (1162)
.. + ..+...+|++.+..+. |......|...++...- .+. +..+.+.+.+.. +.+ +-+ .
T Consensus 83 ~~~~~~~~~~~~~s~~a~r~~~aa~~~-g~~~~~~~~~alf~a~~~~~~-----~i~~~~~L~~~a-~~~----Gl~~~d 151 (226)
T 1r4w_A 83 VPKDFFGEHVKKGTVNAMRFLTAVSME-QPEMLEKVSRELWMRIWSRDE-----DITESQNILSAA-EKA----GMATAQ 151 (226)
T ss_dssp CCSSTTTHHHHHCSHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHTSCC-----CCSSHHHHHHHH-HHT----TCCHHH
T ss_pred CCCccccccCCCCCHHHHHHHHHHHhh-ChHHHHHHHHHHHHHHhcCCC-----CCCCHHHHHHHH-HHc----CCCchh
Confidence 00 0 1255567777776543 65444555555543321 111 111223333332 211 111 1
Q ss_pred hhhhhhhhcccchhhhHHHHHHHHHHhCCCcCCceeeEe----ceeccC
Q 001078 182 QDMLLKLEKEKTFMDQSQESSMFVFKLGLTKLKCCLLMN----GLVSES 226 (1162)
Q Consensus 182 ~~~~~~l~~~~~~d~~~~~~~~f~~Rlgl~~~~p~vlvN----Gv~~~~ 226 (1162)
.+.+.....+.++.+.++...+-..++|+.+ .|.++|| |..+.-
T Consensus 152 ~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~G-~Ptfvv~~~g~~~~~~G 199 (226)
T 1r4w_A 152 AQHLLNKISTELVKSKLRETTGAACKYGAFG-LPTTVAHVDGKTYMLFG 199 (226)
T ss_dssp HHHHHTTTTSHHHHHHHHHHHHHHHHTTCCS-SCEEEEEETTEEEEEES
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHCCCCC-CCEEEEeCCCCcCceeC
Confidence 1223333447778888888888889999965 5999999 776643
No 50
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=23.00 E-value=2e+02 Score=25.93 Aligned_cols=57 Identities=9% Similarity=0.091 Sum_probs=34.2
Q ss_pred EEEEEeccCCCCCCCce--EEEEecCCCCcccc-eEEEecceeeee----e--eCCceeEEEecCC
Q 001078 697 VLTGHCSEKDHEPPQGL--QLILGTKSTPHLVD-TLVMANLGYWQM----K--VSPGVWYLQLAPG 753 (1162)
Q Consensus 697 lieG~~~d~~~~~p~Gl--ql~L~~~~~~~~~d-T~vM~nlGYfQl----k--a~pG~~~l~l~~G 753 (1162)
-+.+.++|....|..+. .++|.+.++..+.. +.+....|.|++ . +..|.|.+++.-+
T Consensus 20 ~~~~~~~~~~~~p~~~~~~~v~l~dp~g~~v~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~~ 85 (102)
T 2p9r_A 20 KFRVVSMDENFHPLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKK 85 (102)
T ss_dssp EEEEEEECGGGCBCCCEEEEEEEECTTSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEECT
T ss_pred EEEEEEECCCCcCCCCCceEEEEECCCCCEEEEEEeecCCCCEEEEEEECCCCCCCeeEEEEEEEC
Confidence 34444555443444443 57788888776665 344455666544 3 3579999988643
No 51
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=21.16 E-value=3.3e+02 Score=32.53 Aligned_cols=104 Identities=12% Similarity=0.134 Sum_probs=63.8
Q ss_pred CeeEEEEEecCcchHHHHHHHHHHHHHcCCCC--eEEEEEeCCCChhH-HHHHHHHHHhcCcEEEEEEecCCcccccccc
Q 001078 853 KTINIFSIASGHLYERFLKIMILSVLKNTCRP--VKFWFIKNYLSPQF-KDVIPHMAQEYGFEYELITYKWPTWLHKQKE 929 (1162)
Q Consensus 853 ~~InIf~vasg~~Y~~~l~v~I~SIl~nt~~~--v~f~Il~~~lS~~~-k~~L~~l~~~~~~~i~fv~~~wp~~L~~~~~ 929 (1162)
..|-|...+.+.. ...+.-+|.||+..+... +.+.|+++.-++.. .+.+..+++.+. .+.++... .
T Consensus 112 P~vSVIIp~yNe~-~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~-~v~vi~~~--~------- 180 (570)
T 2d7i_A 112 PNTSIIIPFHNEG-WSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFP-SVRILRTK--K------- 180 (570)
T ss_dssp CCEEEEEEESSCC-HHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTST-TEEEEECS--S-------
T ss_pred CCeEEEEEECCCC-HHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhCC-eEEEEECC--C-------
Confidence 3466766655532 367889999999988654 47888888777666 778888776552 45444432 1
Q ss_pred cccHHHHHHHHhhcccCCCCCCeEEEEeCCeeecC-CchHHHh
Q 001078 930 KQRIIWAYKILFLDVIFPLSLEKVIFVDADQVVRA-DMGELYD 971 (1162)
Q Consensus 930 ~~r~~~~Y~RLfL~~lfP~~vdrVLYLDaD~IV~~-DL~eL~~ 971 (1162)
......+ |...-.. ..-+-|++||+|.++.. -|.+|..
T Consensus 181 n~G~~~A--~N~G~~~--A~gd~i~fLD~D~~~~p~~L~~ll~ 219 (570)
T 2d7i_A 181 REGLIRT--RMLGASV--ATGDVITFLDSHCEANVNWLPPLLD 219 (570)
T ss_dssp CCCHHHH--HHHHHHH--CCSSEEEECCSSEEECTTCSHHHHH
T ss_pred CCCHHHH--HHHHHHh--cCCCEEEEEcCCccccccHHHHHHH
Confidence 0111111 1111111 13589999999999864 5666664
No 52
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=20.84 E-value=1.2e+02 Score=30.49 Aligned_cols=158 Identities=9% Similarity=0.088 Sum_probs=75.0
Q ss_pred ceEEEEEeeCCChhhHHHHHHHHHHHhcCCCceEEEEEecCCCCCCCchhHHHHHHHHHhhcccchhhHHHHHHHHhhhh
Q 001078 315 PVTHLLAVDVTSKKGMKLLHEGIRFLIGGSNGARLGVLFSASREADLPSIIFVKAFEITASTYSHKKKVLEFLDQLCSFY 394 (1162)
Q Consensus 315 ~~t~wvv~D~~~~~g~~l~~~al~~l~~~~~~~Rv~~v~n~~~~~~~~~~~~~~~i~aa~~~~~~~~~~~~~l~~l~~~~ 394 (1162)
.+|+....|+.++-.+++. ..++-+.+.- ++++.-++-+-.. .....+++..++....... ....+...+....
T Consensus 23 ~~~vvef~d~~Cp~C~~~~-~~~~~~~~~~-~v~~~~~p~~~~~---~~~~aa~a~~Aa~~q~g~~-~~~~~~~~lf~a~ 96 (185)
T 3feu_A 23 MAPVTEVFALSCGHCRNME-NFLPVISQEA-GTDIGKMHITFNQ---SAHIASMFYYAAEMQVDGA-PDHAFMEDLFAAT 96 (185)
T ss_dssp CCSEEEEECTTCHHHHHHG-GGHHHHHHHH-TSCCEEEECCSSS---HHHHHHHHHHHHHTTSSSS-CCHHHHHHHHHHH
T ss_pred CCEEEEEECCCChhHHHhh-HHHHHHHHHh-CCeEEEEeccCCc---cchHHHHHHHHHHHHhCCc-hHHHHHHHHHHHH
Confidence 4677788899999888775 3444433322 4555444432211 1122344444442211110 0112323333211
Q ss_pred hhhhhhcccccccchHHHHHHHHHHHHhcCC-ChHhHhhccCccchhhHHHHHHHHHHHHHHHhCCCCCCcEEEEcCEEe
Q 001078 395 ERTYLLASSATADSTQAFIDKVCEFAEANGL-SSKVYRASLPEYSKGKVRKQLNKVVQFLHRQLGVESGANAVITNGRVT 473 (1162)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~NGR~i 473 (1162)
..... ...+ ...+.+.++++..|+ +.+.+...+.+ .+...+.+ ..-..+.+|+. |.+++++||+++
T Consensus 97 ~~~~~------~~~~-~~~~~L~~~a~~~Gl~d~~~~~~~~~~----~~~~~v~~-~~~~a~~~gv~-GtPtfvvng~~~ 163 (185)
T 3feu_A 97 QMGEG------TTLT-EQQEAYSKAFTSRGLVSPYDFNEEQRD----TLIKKVDN-AKMLSEKSGIS-SVPTFVVNGKYN 163 (185)
T ss_dssp TCCTT------SCHH-HHHHHHHHHHHTTTCCCGGGCCHHHHH----HHHHHHHH-HHHHHHHHTCC-SSSEEEETTTEE
T ss_pred HHhcc------CCCC-CCHHHHHHHHHHcCCCCHHHHHHHHHH----HHHHHHHH-HHHHHHHcCCC-ccCEEEECCEEE
Confidence 11000 0011 123456667777887 77766554322 11111122 22245567886 899999999975
Q ss_pred cCCCCCCCChhhHHHHHHH
Q 001078 474 FPIDESTFLSHDLSLLESV 492 (1162)
Q Consensus 474 ~~~~~~~~~~~d~~~l~~~ 492 (1162)
-..+ ..-+.++|..++..
T Consensus 164 v~~~-Ga~~~e~~~~~i~~ 181 (185)
T 3feu_A 164 VLIG-GHDDPKQIADTIRY 181 (185)
T ss_dssp ECGG-GCSSHHHHHHHHHH
T ss_pred EecC-CCCCHHHHHHHHHH
Confidence 3211 22345666666644
Done!