Query 001079
Match_columns 1162
No_of_seqs 215 out of 256
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 15:15:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001079hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1931 Putative transmembrane 100.0 6E-117 1E-121 1055.0 44.3 959 9-1154 1-1061(1156)
2 KOG4386 Uncharacterized conser 99.9 8.4E-26 1.8E-30 254.9 -3.2 482 559-1080 113-671 (809)
3 PF07919 Gryzun: Gryzun, putat 99.7 9.3E-15 2E-19 180.0 35.8 341 699-1077 23-445 (554)
4 PF11817 Foie-gras_1: Foie gra 99.4 7.3E-13 1.6E-17 146.9 11.9 99 551-649 148-246 (247)
5 PF06159 DUF974: Protein of un 97.6 0.0074 1.6E-07 67.4 22.0 115 965-1080 103-237 (249)
6 PF08626 TRAPPC9-Trs120: Trans 97.3 0.21 4.5E-06 67.8 33.2 280 567-854 451-822 (1185)
7 PF14938 SNAP: Soluble NSF att 96.0 0.055 1.2E-06 61.6 11.8 88 561-648 94-182 (282)
8 PF13424 TPR_12: Tetratricopep 93.7 0.32 6.8E-06 43.7 8.0 66 582-647 6-75 (78)
9 PRK10803 tol-pal system protei 92.7 0.56 1.2E-05 53.0 9.8 71 579-652 178-248 (263)
10 KOG1953 Targeting complex (TRA 91.4 36 0.00078 44.4 23.8 245 594-845 524-841 (1235)
11 PF12584 TRAPPC10: Trafficking 89.2 0.35 7.5E-06 49.8 3.6 42 1111-1152 2-47 (147)
12 KOG1586 Protein required for f 88.8 1.2 2.6E-05 49.0 7.3 67 562-628 94-161 (288)
13 PF12688 TPR_5: Tetratrico pep 87.5 3.6 7.8E-05 41.0 9.3 83 564-649 17-103 (120)
14 PF13424 TPR_12: Tetratricopep 87.2 1.4 3E-05 39.5 5.7 51 562-612 26-77 (78)
15 PF14938 SNAP: Soluble NSF att 86.2 8 0.00017 44.0 12.6 111 562-673 136-247 (282)
16 PF13432 TPR_16: Tetratricopep 86.2 2.3 5E-05 36.6 6.4 58 586-649 2-59 (65)
17 TIGR02795 tol_pal_ybgF tol-pal 86.2 4.3 9.4E-05 38.5 9.0 67 582-651 40-106 (119)
18 PF13176 TPR_7: Tetratricopept 85.6 1.4 3E-05 34.0 4.2 28 585-612 3-30 (36)
19 PF14559 TPR_19: Tetratricopep 85.4 0.76 1.6E-05 39.9 3.0 56 564-619 7-64 (68)
20 COG1729 Uncharacterized protei 84.5 5.4 0.00012 44.9 9.8 73 578-653 175-247 (262)
21 PF13414 TPR_11: TPR repeat; P 83.6 2.3 5.1E-05 36.9 5.3 59 583-647 5-64 (69)
22 COG1470 Predicted membrane pro 83.2 97 0.0021 37.7 19.5 164 701-931 282-457 (513)
23 cd00189 TPR Tetratricopeptide 82.7 5.2 0.00011 34.5 7.3 56 582-643 35-90 (100)
24 KOG1931 Putative transmembrane 82.5 0.31 6.6E-06 62.5 -1.1 254 544-816 410-676 (1156)
25 PF13174 TPR_6: Tetratricopept 81.9 1.8 3.9E-05 31.8 3.4 30 584-613 3-32 (33)
26 PF12895 Apc3: Anaphase-promot 81.2 2.1 4.5E-05 39.1 4.2 54 584-644 28-81 (84)
27 PF13374 TPR_10: Tetratricopep 78.6 3.7 8E-05 31.7 4.3 31 583-613 4-34 (42)
28 COG2956 Predicted N-acetylgluc 78.4 19 0.00041 41.6 11.3 84 553-648 193-276 (389)
29 PF07719 TPR_2: Tetratricopept 77.5 3.8 8.2E-05 30.3 3.9 29 584-612 4-32 (34)
30 PF00515 TPR_1: Tetratricopept 74.1 5.9 0.00013 29.5 4.2 29 583-611 3-31 (34)
31 cd00189 TPR Tetratricopeptide 73.4 10 0.00022 32.7 6.3 59 584-648 3-61 (100)
32 PF13432 TPR_16: Tetratricopep 70.1 11 0.00023 32.4 5.5 50 563-612 12-62 (65)
33 PF13525 YfiO: Outer membrane 69.4 6.7 0.00015 42.4 5.0 52 584-638 144-195 (203)
34 KOG1840 Kinesin light chain [C 68.5 48 0.001 41.2 12.5 106 543-649 286-398 (508)
35 PF13181 TPR_8: Tetratricopept 68.3 9.9 0.00021 28.2 4.3 29 583-611 3-31 (34)
36 PF13371 TPR_9: Tetratricopept 68.2 14 0.0003 32.3 6.0 57 587-649 1-57 (73)
37 KOG2002 TPR-containing nuclear 67.5 38 0.00082 44.3 11.4 74 561-636 433-511 (1018)
38 PF12862 Apc5: Anaphase-promot 66.9 30 0.00065 32.6 8.3 51 582-632 42-92 (94)
39 TIGR03302 OM_YfiO outer membra 66.3 17 0.00037 39.6 7.4 60 585-647 170-229 (235)
40 TIGR02552 LcrH_SycD type III s 66.0 41 0.00088 32.9 9.5 61 582-648 52-112 (135)
41 PF13525 YfiO: Outer membrane 64.6 72 0.0016 34.4 11.8 56 576-634 37-92 (203)
42 PRK10866 outer membrane biogen 64.3 27 0.00058 39.1 8.6 96 545-645 139-236 (243)
43 PF12739 TRAPPC-Trs85: ER-Golg 64.1 16 0.00035 44.1 7.3 62 576-637 203-264 (414)
44 smart00028 TPR Tetratricopepti 61.9 11 0.00025 25.6 3.4 28 584-611 4-31 (34)
45 PF14559 TPR_19: Tetratricopep 59.7 16 0.00034 31.5 4.6 52 592-649 2-53 (68)
46 PLN03088 SGT1, suppressor of 58.4 63 0.0014 38.2 10.7 79 565-649 19-98 (356)
47 PF13371 TPR_9: Tetratricopept 58.1 16 0.00035 31.9 4.5 57 549-612 4-60 (73)
48 PF13414 TPR_11: TPR repeat; P 55.9 19 0.00042 31.1 4.5 48 563-610 18-67 (69)
49 PRK10866 outer membrane biogen 55.7 1E+02 0.0023 34.4 11.4 55 578-635 66-120 (243)
50 PF09976 TPR_21: Tetratricopep 55.4 68 0.0015 32.4 9.1 65 576-643 43-107 (145)
51 TIGR02795 tol_pal_ybgF tol-pal 54.2 52 0.0011 30.9 7.7 63 584-649 5-67 (119)
52 PRK15359 type III secretion sy 52.7 1.5E+02 0.0033 30.1 11.1 80 565-650 41-121 (144)
53 PF13428 TPR_14: Tetratricopep 51.9 24 0.00053 28.2 4.1 32 584-615 4-35 (44)
54 KOG1840 Kinesin light chain [C 49.5 72 0.0016 39.7 9.4 87 562-648 388-477 (508)
55 PF09986 DUF2225: Uncharacteri 49.2 60 0.0013 35.7 8.0 35 581-615 165-199 (214)
56 KOG1155 Anaphase-promoting com 48.9 1.7E+02 0.0037 35.8 11.8 115 544-669 432-552 (559)
57 PRK02603 photosystem I assembl 48.8 1.4E+02 0.003 31.1 10.4 68 564-637 51-122 (172)
58 TIGR02521 type_IV_pilW type IV 48.7 80 0.0017 32.8 8.8 25 585-609 103-127 (234)
59 PF04781 DUF627: Protein of un 48.6 82 0.0018 31.1 7.8 66 586-651 1-70 (111)
60 PF10602 RPN7: 26S proteasome 47.8 82 0.0018 33.5 8.5 82 565-649 20-104 (177)
61 TIGR02521 type_IV_pilW type IV 47.4 81 0.0018 32.8 8.5 52 582-639 66-117 (234)
62 PRK02603 photosystem I assembl 44.1 72 0.0016 33.2 7.4 58 583-643 37-94 (172)
63 PF07720 TPR_3: Tetratricopept 43.0 40 0.00087 26.4 3.9 20 586-605 6-25 (36)
64 TIGR02552 LcrH_SycD type III s 41.0 1.1E+02 0.0025 29.8 7.9 52 582-639 18-69 (135)
65 TIGR03302 OM_YfiO outer membra 40.3 85 0.0018 34.0 7.6 67 564-633 49-119 (235)
66 PF12862 Apc5: Anaphase-promot 39.8 1.1E+02 0.0023 28.9 7.1 60 590-649 7-69 (94)
67 TIGR03504 FimV_Cterm FimV C-te 39.4 38 0.00083 27.8 3.4 25 585-609 3-27 (44)
68 KOG0543 FKBP-type peptidyl-pro 36.8 70 0.0015 38.2 6.3 67 585-651 212-287 (397)
69 PF09976 TPR_21: Tetratricopep 36.7 1.1E+02 0.0024 30.9 7.2 51 582-639 86-136 (145)
70 PF14853 Fis1_TPR_C: Fis1 C-te 36.3 46 0.00099 28.4 3.5 27 584-610 4-30 (53)
71 PLN03098 LPA1 LOW PSII ACCUMUL 35.1 77 0.0017 38.6 6.4 50 562-611 89-142 (453)
72 KOG2076 RNA polymerase III tra 35.0 93 0.002 40.5 7.4 87 563-650 464-555 (895)
73 PF12895 Apc3: Anaphase-promot 34.5 63 0.0014 29.3 4.5 26 582-607 59-84 (84)
74 PRK11788 tetratricopeptide rep 34.3 1.8E+02 0.0038 34.0 9.4 59 584-648 110-168 (389)
75 PF13174 TPR_6: Tetratricopept 34.2 48 0.001 24.0 3.0 27 221-247 4-30 (33)
76 PF07721 TPR_4: Tetratricopept 33.7 61 0.0013 23.1 3.3 23 583-605 3-25 (26)
77 KOG1585 Protein required for f 33.5 2.7E+02 0.0058 31.6 9.6 84 561-648 91-174 (308)
78 PRK11788 tetratricopeptide rep 32.8 1.9E+02 0.0042 33.7 9.5 59 584-648 183-241 (389)
79 PF13429 TPR_15: Tetratricopep 32.7 82 0.0018 35.4 6.1 72 564-643 199-270 (280)
80 CHL00033 ycf3 photosystem I as 32.3 1.4E+02 0.003 30.9 7.2 67 564-636 51-121 (168)
81 TIGR00990 3a0801s09 mitochondr 32.3 1.7E+02 0.0036 37.2 9.3 73 564-642 415-488 (615)
82 PF05843 Suf: Suppressor of fo 32.2 5.2E+02 0.011 29.4 12.5 97 564-670 17-116 (280)
83 PF04190 DUF410: Protein of un 31.8 1.7E+02 0.0036 33.2 8.2 78 592-671 1-80 (260)
84 KOG0547 Translocase of outer m 31.1 1.2E+02 0.0027 37.1 7.1 59 585-649 119-177 (606)
85 KOG2758 Translation initiation 30.3 1.4E+02 0.003 34.8 7.0 101 536-643 91-199 (432)
86 TIGR00990 3a0801s09 mitochondr 30.0 1.2E+02 0.0025 38.6 7.4 70 564-639 143-212 (615)
87 PF13176 TPR_7: Tetratricopept 29.3 62 0.0013 24.8 3.0 25 221-245 3-27 (36)
88 TIGR02917 PEP_TPR_lipo putativ 29.1 1.4E+02 0.0031 38.2 8.2 45 565-610 787-832 (899)
89 TIGR02917 PEP_TPR_lipo putativ 28.8 1.8E+02 0.0038 37.5 8.9 59 583-648 705-763 (899)
90 CHL00033 ycf3 photosystem I as 28.1 2.4E+02 0.0052 29.0 8.2 55 583-640 37-91 (168)
91 cd05804 StaR_like StaR_like; a 28.1 2.1E+02 0.0045 33.0 8.5 61 582-644 149-209 (355)
92 PF10300 DUF3808: Protein of u 27.1 2.4E+02 0.0052 34.8 9.1 70 563-637 282-356 (468)
93 PF03504 Chlam_OMP6: Chlamydia 26.9 3.3E+02 0.0072 25.5 7.5 46 813-859 11-56 (95)
94 PF12690 BsuPI: Intracellular 26.6 5E+02 0.011 24.1 9.0 29 743-771 50-81 (82)
95 KOG2076 RNA polymerase III tra 25.5 1.7E+02 0.0037 38.3 7.4 52 583-639 416-467 (895)
96 PF04733 Coatomer_E: Coatomer 24.8 1.8E+02 0.0039 33.5 7.1 53 581-639 201-253 (290)
97 KOG1126 DNA-binding cell divis 24.6 2.3E+02 0.0049 36.0 8.0 78 553-630 324-412 (638)
98 KOG0545 Aryl-hydrocarbon recep 24.5 1.4E+02 0.0031 33.6 5.7 66 586-651 183-260 (329)
99 KOG1585 Protein required for f 24.3 3.1E+02 0.0068 31.1 8.2 89 547-636 38-126 (308)
100 cd02680 MIT_calpain7_2 MIT: do 23.6 1.4E+02 0.0031 27.4 4.7 36 592-627 17-52 (75)
101 TIGR03504 FimV_Cterm FimV C-te 22.3 1E+02 0.0022 25.3 3.1 26 220-245 2-27 (44)
102 KOG3081 Vesicle coat complex C 21.6 3.6E+02 0.0078 30.9 8.1 53 582-640 208-260 (299)
103 PF03704 BTAD: Bacterial trans 21.5 3.1E+02 0.0067 27.4 7.3 48 584-637 65-112 (146)
104 PF07919 Gryzun: Gryzun, putat 21.2 7.3E+02 0.016 30.9 12.0 137 702-854 355-507 (554)
105 PF13374 TPR_10: Tetratricopep 21.1 1.4E+02 0.003 22.6 3.7 28 220-247 5-32 (42)
106 PF07705 CARDB: CARDB; InterP 20.7 4.9E+02 0.011 23.8 8.1 64 699-770 15-79 (101)
107 PF13428 TPR_14: Tetratricopep 20.6 1.4E+02 0.003 23.7 3.6 27 220-246 4-30 (44)
108 PRK11447 cellulose synthase su 20.5 3.1E+02 0.0068 37.8 9.2 50 564-613 285-335 (1157)
109 PRK10370 formate-dependent nit 20.5 1.5E+02 0.0033 31.9 5.1 31 583-613 146-176 (198)
110 KOG1586 Protein required for f 20.4 3.6E+02 0.0078 30.4 7.7 61 592-652 25-85 (288)
111 PRK15174 Vi polysaccharide exp 20.3 3E+02 0.0065 35.4 8.5 60 584-649 321-380 (656)
No 1
>KOG1931 consensus Putative transmembrane protein [General function prediction only]
Probab=100.00 E-value=6.1e-117 Score=1055.02 Aligned_cols=959 Identities=26% Similarity=0.346 Sum_probs=729.0
Q ss_pred hhccccCCeeEEEEeCCCCChHHHHHHHHhhCCCCceeeecCCCCCeeeeeeeeeEEEccchhhccCCCcccccccccCc
Q 001079 9 QSIKSTCDRIVIAVEDVSDLWPTIQSGFEEQLPFKRACLNNKTRNPVFVEKLPAEFILTTDARLRSRFPQEQLLFWFREP 88 (1162)
Q Consensus 9 ~~~~~~~~~v~v~y~Dp~~lf~~i~~~l~~~lPL~nlhWK~~~~~~~~I~~L~v~fv~~~d~~~~~~~p~~~~~~l~~~P 88 (1162)
|.|+++|++.+|.|+||||||++|+++|++++||+|+||++++++.+++.+||++|+|+.++.+... +.|.+.++..|
T Consensus 1 ~~i~~~~~kPIvty~d~~dLf~Sl~~~~eq~lPL~~~~W~~s~~r~~~~i~L~~efi~~~e~~l~~~--~~~d~sll~~P 78 (1156)
T KOG1931|consen 1 MDIEISCGKPIVTYFDPFDLFPSLRPEFEQILPLDNIEWRRSYGRVPKVIRLPIEFIPFGEEELDQD--KSGDKSLLEFP 78 (1156)
T ss_pred CchhhccCCceEEEeccccchhhhHHHHHhhcCCchhhhhhhcCcCCeEEEechhhhhhhhhhcccc--ccCCchhhhCc
Confidence 5799999999999999999999999999999999999999988888766679999999999887432 45678899999
Q ss_pred eEEEEEEecCChHHHHHcchHHHHhhh----cCCCCCeEEEEEccCCC-CchhhhhhhHhHHHHHhhhcCCCCCCeEEEe
Q 001079 89 YATVVLVTCEDLDEFKTILKPRLKLIT----QNDEREWFIVFVSKAHP-NNDQANKMAKKVFAKLEVDFNSKKRERCCKF 163 (1162)
Q Consensus 89 yl~i~~v~C~d~D~YKs~vR~~lk~w~----~~~~~eWlIv~v~~~~~-~~~~s~~~~~svlDKik~DF~~k~~dRc~~l 163 (1162)
|+||+||.|.|+|+||++|||.+.+|+ +++.++||||+|..++. ++++..+-.+||+||||.||++|+.|||+.|
T Consensus 79 ~l~i~~v~C~D~d~YKa~vr~~~~kWlk~l~s~~~~~WmIViV~~~a~rsn~~n~~~~~sv~dKir~DF~tkq~drCv~l 158 (1156)
T KOG1931|consen 79 FLHILIVECIDIDQYKATVRPLVTKWLKNLESNSSSDWMIVIVEYAAKRSNDSNLFPVKSVMDKIRKDFPTKQTDRCVSL 158 (1156)
T ss_pred eeEEEEEecccHHHHHHhcchHHHHHHHHhhhcCCcceEEEEEeccccccccccccchhhHHHHHhcccCCCCcceeEEe
Confidence 999999999999999999999998886 47899999999996642 2332222368999999999999999999999
Q ss_pred cCCC---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCchHHHHHHHHHHHHHHHHhcchHHHHHHH
Q 001079 164 DIHG---PEPNFWEDLESKVMESIRNTLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREY 240 (1162)
Q Consensus 164 ~~~~---~~~~~W~~li~klK~~iL~sFd~rv~~yee~ir~~~~~R~~pgWnF~~~FilKE~LA~~fe~~gL~edAL~~Y 240 (1162)
+.+. +++|+||+|++|||.++|++||+|+.+|||+||+++++|++||||||+||++||+||++|||++|+||||.||
T Consensus 159 ~~~~k~~~~~e~Wn~f~qki~~~vLss~dkr~~~~ee~iRslre~r~~~~wdF~~fFl~kE~LA~iFe~l~l~edAL~qy 238 (1156)
T KOG1931|consen 159 DRPPKERQEAEFWNQFLQKIRALVLSSLDKRLTKLEESIRSLREKRNSPGWDFCEFFLTKEKLAFIFEMLNLLEDALLQY 238 (1156)
T ss_pred ecCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 8653 3457999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcc-C-Cc-ccccCCCCCCCcc---cccCCCCChhhhhhhhcCCcchhhhHHHHHHHHHHHHHHhCChHH
Q 001079 241 DELELCYLETVNM-N-GK-HKEFGGVERGDDE---AALLNPGNKALTEIVQDDSFREFEFRQYLFACQSKLLFKLNRPFE 314 (1162)
Q Consensus 241 dEL~~~f~~~v~~-~-~~-~~~f~~~~~~dd~---~~~l~~~~k~~r~lI~~~~iSlFdfR~YlFsRQ~~LLl~l~~~~E 314 (1162)
|||+++|++.+.. + |+ +.|||++..+||+ +.++-++.++.++.|+++.+++|+||.|+|+||+.||++++||+|
T Consensus 239 del~a~~sq~i~~~g~~k~q~~l~~f~kpd~s~~g~~ll~~gs~~~~q~i~d~~ftl~efR~yLf~~Q~~Lll~lnrp~e 318 (1156)
T KOG1931|consen 239 DELDAEFSQRIMNMGDGKLQVWLGSFSKPDDSLFGGSLLIPGSLEKTQHIQDKYFTLFEFRLYLFERQTLLLLKLNRPFE 318 (1156)
T ss_pred HHHHHHHHHHHhcCCCccccccccccCCchhhhcCceEEecCchHHHHhhhcCceeeehHHHHHHHHHHHHHHhcCCcHH
Confidence 9999999999854 4 33 5999998877775 778888899999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHhhccCCCCCCCCcchHHHHHhhhhHHHHHHHHHHHHHH
Q 001079 315 VASRGYPFIISFSKALAQHEDILPFCMREVWVITACLALIDATSSQYNDGLAAPDIEKEFYRLLGDLYSLCRIKFMRLAY 394 (1162)
Q Consensus 315 v~~R~~~FI~~f~~~L~~~e~~l~~~~i~~W~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~e~~~eL~~~ar~~l~~l~~ 394 (1162)
||+|+|+|+.+|++.+..++.++++++++||.|.+|+++++.|.. .+-..|+..+.+..++|++|.+||.++..+|.
T Consensus 319 va~r~~e~l~s~lqel~Ll~~s~~~~~~~~w~i~a~L~~~e~~~~---~~~~~~n~~t~~~~~~~~iw~~ar~kL~~m~~ 395 (1156)
T KOG1931|consen 319 VASRAYELLFSFLQELSLLESSVPLGALKCWEITAALEYLEFTEV---SGPLLPNIKTELFMLCADIWSYARMKLYGMAL 395 (1156)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHhhc---cccccccccchHHHHhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999972 12245556677899999999999999999999
Q ss_pred HhcCCCCCcCCCcccccccCCCCCCCCCCCCCCCCchhHHHHHHhhhhccCCCccccccCCCCCCCChhHHHHHHHhhhh
Q 001079 395 LIGHGTDIERSPVNSASLSMLPWPKPPVWPLVPADASAEVLAKEKLILQATPRVKHFGIHRKPLPLEPSVLLREANRRRA 474 (1162)
Q Consensus 395 ~~g~~~~~~~~p~rssSl~~~~~p~p~~~p~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~Lee~~~rr~ 474 (1162)
+||..|+. . |. -++++++. . +
T Consensus 396 ~~~li~d~--~--------------p~--------~~se~l~~----------~---------------~---------- 416 (1156)
T KOG1931|consen 396 LCGLIPDS--D--------------PN--------YKSEQLKE----------T---------------F---------- 416 (1156)
T ss_pred HhccCCCC--C--------------CC--------ccccccce----------E---------------e----------
Confidence 99997762 0 10 01222211 0 0
Q ss_pred ccccCccccccCCCCCCccccCCCCccchhccccccCCCCCCCCCCCcchhhhhHHHhhhhhhccCCCchHHHHhhcCHH
Q 001079 475 SLSAGNMFEIFDGSGPDVSLRMSPSNKVQAVSMSRTNSSPGFESSIDRPMRLAEIFVASEHALRQTISNPNLLKSLSSVE 554 (1162)
Q Consensus 475 ~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~L~~ALsS~e 554 (1162)
.+.. +.|+... +..+ .+.-...++++|+.+..
T Consensus 417 ~~~~--------~l~d~r~--------------------~~~k--------------------e~~S~~~k~~~~~~~~~ 448 (1156)
T KOG1931|consen 417 VLST--------GLLDNRP--------------------TLTK--------------------EALSLFNKLEEALQRIV 448 (1156)
T ss_pred eehh--------hhhhccc--------------------Ccch--------------------hhhhhHHHHHHHHHHHH
Confidence 0000 1121111 1000 01124689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHh
Q 001079 555 EFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKIL 634 (1162)
Q Consensus 555 ~F~~~Yl~Lt~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L 634 (1162)
+|.++|+++.+.++..|+++.|.|.|+.++.|+|++|...+.+++|..++.++...|..++|....++++..++.|++.|
T Consensus 449 s~~k~~~~l~~~~~~~y~~~~rl~~ar~~~~d~~N~y~~~~~p~~~v~~~t~~~k~~~~e~wa~~~s~t~~~l~~f~~~L 528 (1156)
T KOG1931|consen 449 SFLKHYLGLLKAQISKYEEAVRLRLARYVGLDLGNFYSILKIPQKAVDSLTHCLKLDLLEIWAEPVSATLVLLANFLNIL 528 (1156)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchhhhHhhhcccchhhhhhhccCcchhhhhccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhcCCCCCcc------------cc-CCCceee------------
Q 001079 635 NDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVP------------LD-VSSLITF------------ 689 (1162)
Q Consensus 635 ~~~~dYv~~~l~LLs~~~~~~s~~eR~~y~~ell~~a~~~l~~~~~------------i~-~s~l~~~------------ 689 (1162)
+...+|.+++.-+.+. ..+.+..|.+++.+++++..--.....+ ++ ++..++.
T Consensus 529 ~~~~~~~k~~~~ia~~--~~L~~~~r~h~~~k~l~~~~~~~~s~~hl~~~~~~n~~v~~~~h~~v~Diev~~~~~~~~~~ 606 (1156)
T KOG1931|consen 529 GLCKAYDKTESSIAKF--HDLQELNRKHLMYKLLGLFEVFLNSKVHLARANVHNYEVNLDSHGFVLDIEVVTMKVKCMDG 606 (1156)
T ss_pred HHHHhhhhhhhHHHhh--HHHHHHHHHHHHHHHHhHHHhhhcchhhhhcccchhhhhhhhhccccceeEEeeccceeecc
Confidence 9999999998755543 3366777899999998766411000000 00 0000000
Q ss_pred ---ecCCC----------C-------------------------------C---------ccccCCCCeEEEEEEEeC-C
Q 001079 690 ---SGNPG----------P-------------------------------P---------LELCDGDPGTLSVTVWSG-F 715 (1162)
Q Consensus 690 ---~~~~~----------~-------------------------------~---------~~~~~~d~~~L~V~l~s~-L 715 (1162)
+..+. + | .+++..+++-+++++..+ +
T Consensus 607 ~~~s~~~v~~L~~~~~v~~~~~~C~di~~~~~~l~s~~v~l~gi~~~~~~~~~q~e~~s~~~iem~~~tk~dn~l~~~~~ 686 (1156)
T KOG1931|consen 607 DVISQGPVDFLYKSIVVNKLILECRDIMYGEAELLSFEVILEGITFVKEFPVNQDELISLPEIEMKNPTKVDNSLQAHGL 686 (1156)
T ss_pred eeeeccchHhhHhhhhhhhHHHHHHhhccchhhheeeeeEeeccccccccccchhhhccchhheeecCccccchhhhhhh
Confidence 00000 0 0 000011111111111111 1
Q ss_pred CCceEeeeEEEEEEec------ccCCCCceEEeecCceEeeCCCeEEEEEcCCCCCeeEEEEEEEEEEcceEEEeccccc
Q 001079 716 PDDITVDTLSLTLMAT------YNADEGAKALNTSTATVLKPGRNTITVDLPPQKPGSYVLGALTGHIGRLRFRSHSFSK 789 (1162)
Q Consensus 716 P~~I~id~v~l~L~~~------~~~~~~~~~l~s~~~~~LkPG~Nki~l~~~~~~~G~y~l~si~i~ig~l~F~s~~f~~ 789 (1162)
-+++.-.+++++.+++ ....++..-.-+..++.|.||.|.+++..++..+|.|.+.+++.++|++.|+++.+.
T Consensus 687 ~c~~~~~~l~~~~s~s~~~~~s~v~~ee~~~~~s~s~v~Lspg~N~i~~~~~~~~~g~~~~~~L~~qi~sl~f~~~q~~- 765 (1156)
T KOG1931|consen 687 NCDEYASKLSVQQSSSLESLQSPVEVEEGIGNMSCSPVSLSPGENQITFRLNAPFPGVYLLYQLCDQIGSLDFISKQSF- 765 (1156)
T ss_pred ccccchhhcceeecccccccccchhhhcccccccccceeeccCcceeEEecCCCCCCeeeehhhhcccceEEEEccccC-
Confidence 1111112222222211 000111122336778999999999999999999999999999999999999965332
Q ss_pred CCCCCCCCccccccCCCCeEEEEcCCCccceeecccCCcccCceEEEEEEEEcCcccc-cceEEEEecCCCCccccccce
Q 001079 790 VGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSL-KGAILQIDTGPGLTIEESHFV 868 (1162)
Q Consensus 790 ~~p~~~~~~~~~e~~~~p~~~v~~~~~~~~L~a~~~~P~L~g~~q~v~l~v~sg~~~i-~~~~L~l~~~~gl~i~~~~~~ 868 (1162)
|+..++.++++ |..+ +.+- .+ ++.|+.|+|+.++..|...| .+..|++.|.....+..+..+
T Consensus 766 --~~~k~d~~s~~-P~~~---~~~l---~~--------lla~I~q~v~~~~~g~i~~i~~~~~l~l~ce~~~~m~~~~~T 828 (1156)
T KOG1931|consen 766 --PTKKNDQGSTE-PETK---KERL---QC--------LLAGIVQSVEDIVKGGILHIKNGLNLSLRCEKEVRMRSSENT 828 (1156)
T ss_pred --CcccccccccC-Cccc---cchH---HH--------HHhhcceeeeeEEeccEEEecCCCcceEEecccceecccccc
Confidence 67777777777 3333 3211 12 56679999999999998888 688888888777777665432
Q ss_pred eeeccccccccccccCccccccccccchhhhcccccceeecCCCCCCceeEEEEEEEEeeccccCCCccccCcccccccc
Q 001079 869 EMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDG 948 (1162)
Q Consensus 869 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~e~ 948 (1162)
++ .++... +.+..++.+ +..+.+...+++...-..-++|++...| .|+++ |
T Consensus 829 ~~-----~ae~~~----------~d~~~~~s~-~~~p~~~~~d~e~~~~~~~~ip~l~~~d---~~ss~----------h 879 (1156)
T KOG1931|consen 829 TI-----FAEAAR----------NDKNIFESL-LCTPKLIFFDFEESFISLYEIPVLNGFD---CFSSD----------H 879 (1156)
T ss_pred cc-----cccccc----------cCccchhhh-ccccceEEecchhcccccccccccCCcc---ccccc----------c
Confidence 11 111100 002222223 5556677778877777777888875554 23222 2
Q ss_pred ceeEEEEeeecccccceeeeEEEEEeeCCeEEEEEeeeccCCCceEEEEEEecccceeeEEecceeeccCCccccccCCC
Q 001079 949 MRTIALKLQFGVCHNQIFERTIAVHFTDPFHVSTRIADKCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDG 1028 (1162)
Q Consensus 949 ~~~~~i~~~~~~~~~~i~~~~i~l~f~~Pf~vs~r~~s~~~~~~~~Lqv~l~s~~p~~l~i~~~~l~l~~~~~~~~~~~~ 1028 (1162)
..+++.|+ |+|+++|+.|+.+|.+||+|++++++.|+|+..+|||++|+.+...+...+.++.+.+|+.+..+.+.
T Consensus 880 ---~~~kvsin-~~~s~~e~~IA~~f~~~~~vt~~l~~~~~~~~~~lqvl~~~~~~~~l~~~~~~l~~~~~~i~~q~~~~ 955 (1156)
T KOG1931|consen 880 ---FNLKVSIN-LPFSQLELFIADAFLIPFDVTWRLLFECGDTFKELQVLKHLLYDYDLFKEDQILVLLPGEIRKQNDLL 955 (1156)
T ss_pred ---ccceeEec-cchhhhheehhhheecccceeEeeehhcCcceeeHHHHHHHHHHhhhhhhceEEEecCcchhhhcCCC
Confidence 34445555 66778888999999999999999999999977799999999999999999999999999998877666
Q ss_pred CCCccccceEecCCCeeeEEEEEeeCCCCCccccccccceeeEEEEEeecCccccc--cCCCcccccCCccccccceeEE
Q 001079 1029 RPTSGFFPLVISSSSKAGILFSICLGKTTPEAEVEAVRRDSLLNIQYGISGKRTIG--AHPPVTAEATGAEDAREGLIFR 1106 (1162)
Q Consensus 1029 ~p~s~~~~~~l~~~~~as~~f~l~~~~~~~~~~~~~~~~~~~f~i~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 1106 (1162)
|++ +++|++. .+.+..-|++.|.. +..+++ +|..+++.....|-.-. -..|-+| --++|...|.
T Consensus 956 ~t~-S~~p~~~--~~s~~~~~il~~~~----ep~~~l--h~~~s~~~~~~~d~d~~~~~~~~r~y-----~~~~qlv~~~ 1021 (1156)
T KOG1931|consen 956 NTK-SFFPNEC--IESVVFDKILICLN----EPESIL--HSRGSAGASFVTDMDELERNLVPRTY-----TVPFQLVGFE 1021 (1156)
T ss_pred Ccc-ccccHHH--HHHHHHHHHHHHhc----CCcccc--cccccccccccchHHhhhcccccccc-----cceecccCce
Confidence 555 7777655 56667777777764 123433 66666554444332211 2222222 2236777788
Q ss_pred eeeeeecccCCcccccccccCCCCCccccceEEEEEEEEEeCcccccc
Q 001079 1107 SALVLQRPVLDPTLAIGFLALPSDGLRVGQLVSMKWRVERLKDFEENE 1154 (1162)
Q Consensus 1107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~rl~~~~~~~ 1154 (1162)
++|+||+. .|+|.++++||||.+|+|+|+||||+++.+++
T Consensus 1022 ~~~dvqa~--------~~p~~~~~~~rv~~~~~mel~iTrl~el~~s~ 1061 (1156)
T KOG1931|consen 1022 PFFDVQAE--------QMPTSHDELCRVGALIGMELSITRLVELLESD 1061 (1156)
T ss_pred eeeeeeee--------eccCcchhHHHHhhccCceEEEEeehhcccch
Confidence 88888877 34668999999999999999999999999987
No 2
>KOG4386 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.90 E-value=8.4e-26 Score=254.91 Aligned_cols=482 Identities=10% Similarity=-0.080 Sum_probs=341.4
Q ss_pred HHHHHHHHHHHHHHhcC--CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhcc
Q 001079 559 KYLELTKGAANNYHCSW--WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILND 636 (1162)
Q Consensus 559 ~Yl~Lt~~Ai~~Yk~a~--R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~ 636 (1162)
.-+.+.+++..+++.+. |+++ .+++.||..||+.++|.+|....+.++..|+.+||+.+...++..+..|++.+..
T Consensus 113 ~~Ia~Lk~~a~Q~~~Y~~P~~nS--~~~V~~Gq~~~~~n~~~~A~~~ve~a~~~~~~q~~~~~~~~Vis~~~~~~~~~qk 190 (809)
T KOG4386|consen 113 TEIAALKRNAPQNVPYPSPDANS--SSTVFFGQRPWRINHEGLATAEVEAAAVTAIIQRLVVNHEGVISLLSAALAQYQK 190 (809)
T ss_pred hHHHHHhhcccccCCCCCCCcCc--cceeEecccceeecchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 44567788889999987 8787 5599999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhcCCCCCcc---------------------------ccCCCceee
Q 001079 637 EAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAYGEMKDPVP---------------------------LDVSSLITF 689 (1162)
Q Consensus 637 ~~dYv~~~l~LLs~~~~~~s~~eR~~y~~ell~~a~~~l~~~~~---------------------------i~~s~l~~~ 689 (1162)
-.+|......++... .+....++++.......+.+++.+++.+ +-.+++..+
T Consensus 191 ~~~~~~~k~~mm~~~-t~~~nne~qR~~r~~~~Vv~dna~~~s~~~Dmm~~~T~a~~~~~~Iq~~~~~~~ql~~sD~V~~ 269 (809)
T KOG4386|consen 191 YGCLRMKKKVMMEMN-TCYANNEIQRALRFWGLVVKDNALPYSIRKDMMHRATWAAYAITSIQDYAVCCMQLMPSDCVKG 269 (809)
T ss_pred hhhHHHHHHHHHhhh-hhhcchHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhheechhhhhhH
Confidence 999999998888763 3344455555555555555543322211 001333333
Q ss_pred ecCCC---CCccccCCCCeEEEEEEEeCCCCceEeeeEEEEEEec-ccCC----CCc-----eEEeecCceEeeCCCeEE
Q 001079 690 SGNPG---PPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMAT-YNAD----EGA-----KALNTSTATVLKPGRNTI 756 (1162)
Q Consensus 690 ~~~~~---~~~~~~~~d~~~L~V~l~s~LP~~I~id~v~l~L~~~-~~~~----~~~-----~~l~s~~~~~LkPG~Nki 756 (1162)
..+.. ||.++. +++...+..+.-+.|..+.+.+..+.|++. |+.. +.. +-.-+.+..++.||+..-
T Consensus 270 l~~~~~~~~P~~~~-~~~~~~q~~L~t~~~~~~~~~q~~~aF~~Q~~k~~~l~~Et~~s~~~~qtv~Q~s~~~V~~e~~s 348 (809)
T KOG4386|consen 270 LLDVLDGKPPGSPF-PNDDISQEQLHTYQLQWQHVLQEHPAFVVQASKIAELFLETRVSFLDQQTVEQDSKVAVRVEIVS 348 (809)
T ss_pred HHHHhcCCCCCCCC-CChhHHHHHHHhcCccHHHHHHhCcHHHhhHhHHHHHHHHHHHHHHHHhhhccCceEEeeHHHHH
Confidence 32221 233222 333445666777889999998888888764 1110 000 000134566677776542
Q ss_pred EE---EcCCCCCeeE-EEEEEEEEEcc----eEEEeccccc-CCCCCCC----------------Cccccc-cCCCCeEE
Q 001079 757 TV---DLPPQKPGSY-VLGALTGHIGR----LRFRSHSFSK-VGPADSD----------------DFMSYE-KPTRPILK 810 (1162)
Q Consensus 757 ~l---~~~~~~~G~y-~l~si~i~ig~----l~F~s~~f~~-~~p~~~~----------------~~~~~e-~~~~p~~~ 810 (1162)
.+ ...+...|.. .....-.-.|+ ..++ .|.. +|++... .-..|+ +..+....
T Consensus 349 ~i~q~i~~nd~~~~~~~~k~~~~A~~t~n~~~~li--~~~~~~G~v~~Sks~~~q~~~~~~~~n~~q~~~~tv~~~t~~l 426 (809)
T KOG4386|consen 349 KIEQVIRLNDVSVHLKAKKFPPDANQTANDADCLI--YDPIHLGSVEVSKSKPLQRVVLLDLKNAKQNWIVTVTKVTLDL 426 (809)
T ss_pred HHHHHHhhcchhheeeeecCCcccccCCCCCcEEE--ecCCCCcchhhhhhhhhhhHHHhhccccccceEEEeeehhhhh
Confidence 11 2333333332 11111111111 1111 2222 2221100 002233 23333444
Q ss_pred EEcCCCccceeecccCCcccCceEEEEEEEEcCcccc-cceEEEEecCCCCccccccceeeeccccccccccccCccccc
Q 001079 811 VFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSL-KGAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDC 889 (1162)
Q Consensus 811 v~~~~~~~~L~a~~~~P~L~g~~q~v~l~v~sg~~~i-~~~~L~l~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 889 (1162)
....++++.+...+.+|++-+|.++.-++|.+...++ -+.+++++|.+|....++.. ++ +.+.+...|
T Consensus 427 ~~a~~~NIe~~~~~~~~~~~~E~~~~~lki~~~kts~~~e~~~kv~~~~Ge~tsLT~r-------n~----~k~~~~~~~ 495 (809)
T KOG4386|consen 427 GNAIRGNIEFDENALNRNCHVENIIGFLKIGVAKTSVKLESVEKVDCLIGEVTSLTIR-------NT----CKSSPIHGL 495 (809)
T ss_pred hhhccCcceeccccCCcccchheEEEEEEeeechhhhhhhhhhhcCcccccccceeee-------cc----cccCCchhh
Confidence 5667788999999999999999999999999999998 69999999999987665432 11 134567778
Q ss_pred cccccchhhhcccccceeecCCCCCCceeEEEEEEEEeeccccCCCccccCccccccccceeEEEEeeecccccceeeeE
Q 001079 890 SLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGMRTIALKLQFGVCHNQIFERT 969 (1162)
Q Consensus 890 ~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~e~~~~~~i~~~~~~~~~~i~~~~ 969 (1162)
+++.+++. ..++.+++-++|...+.+|+||.+.+.|+|...+++.....|+. ..+.|+ ||+.. |
T Consensus 496 ~d~~~~~~-------k~~~a~~v~~~EQ~~KmlyvrcgtvgsrmflvyvsyLinttVee---keivck---chkde---T 559 (809)
T KOG4386|consen 496 LDFKRKEQ-------KHAEAAAVLFVEQELKMLYVRCGTVGSRMFLVYVSYLINTTVEE---KEIVCK---CHKDE---T 559 (809)
T ss_pred hhhhhHhh-------ccCchhhcchHHHHHHHHHHhhhhhccchhhHHHHHHhhhHHHH---hhHhhh---ccccc---e
Confidence 88877763 67899999999999999999999999999977666665556665 677788 99998 9
Q ss_pred EEEEeeCCeEEEEEeeec--------cCCCceEEEEEEecccceeeEEecceeeccCCccccccCCCCCCccccceEecC
Q 001079 970 IAVHFTDPFHVSTRIADK--------CSDGTLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQGDGRPTSGFFPLVISS 1041 (1162)
Q Consensus 970 i~l~f~~Pf~vs~r~~s~--------~~~~~~~Lqv~l~s~~p~~l~i~~~~l~l~~~~~~~~~~~~~p~s~~~~~~l~~ 1041 (1162)
++++...||+|..+|+++ +.|++|+++.++.+.+||.++|.+++|++.+.+..+ .|..|+..++.++.
T Consensus 560 vtietvfpfdvavkFvstkfehlervyadIpfllmtdLlsaspwAltIVsSelqlapsmttv----dqleSqvdnvilqt 635 (809)
T KOG4386|consen 560 VTIETVFPFDVAVKFVSTKFEHLERVYADIPFLLMTDLLSASPWALTIVSSELQLAPSMTTV----DQLESQVDNVILQT 635 (809)
T ss_pred EEEEEEeeeeeeeeeehhhhhhccChhhhhhHHHHHHHhhhchHHHHHHHHHHhhhhhheee----ecccccccchhhhc
Confidence 999999999999999993 899999999999999999999999999999954443 33667889999999
Q ss_pred CCeeeEEEEEeeCCCCCccccccccceeeEEEEEeecCc
Q 001079 1042 SSKAGILFSICLGKTTPEAEVEAVRRDSLLNIQYGISGK 1080 (1162)
Q Consensus 1042 ~~~as~~f~l~~~~~~~~~~~~~~~~~~~f~i~y~~~~~ 1080 (1162)
||.|++|||++|+..+ +.|.... .|+|.|.|+|+.-
T Consensus 636 gEsasecfclqcpslg-niEggva--tGhyiisWkRtsa 671 (809)
T KOG4386|consen 636 GESASECFCLQCPSLG-NIEGGVA--TGHYIISWKRTSA 671 (809)
T ss_pred ccceeeeeeEeccccc-cccCCCc--cceEEEEEeeccc
Confidence 9999999999999885 2233322 7999999999865
No 3
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=99.71 E-value=9.3e-15 Score=179.97 Aligned_cols=341 Identities=17% Similarity=0.192 Sum_probs=214.0
Q ss_pred ccCCCCeEEEEEEEeCCCCceEeeeEEEEEEec-ccC----CC-----------CceEEeecCceEeeCCCeE-EEEEcC
Q 001079 699 LCDGDPGTLSVTVWSGFPDDITVDTLSLTLMAT-YNA----DE-----------GAKALNTSTATVLKPGRNT-ITVDLP 761 (1162)
Q Consensus 699 ~~~~d~~~L~V~l~s~LP~~I~id~v~l~L~~~-~~~----~~-----------~~~~l~s~~~~~LkPG~Nk-i~l~~~ 761 (1162)
...++++.++|.|+|++|.+|.+++++|.|++. ++. +. .........++.|.||..+ +.+...
T Consensus 23 ~~~~~~~~~ql~i~S~~~~pi~~s~l~V~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~l~p~~~kv~~~~~~ 102 (554)
T PF07919_consen 23 GKVGEPVQFQLSIRSNAPSPIRFSSLKVNFSGSLYPIVISHSDADASSADSSTSSGSPLSGSADLTLSPGQTKVFSFKFV 102 (554)
T ss_pred ccCCCeEEEEEEEEcCCCCCEEeeEEEEEeeCCCCCceEeccccccccccCcccccccccCccceEEeecceEEEEEEEe
Confidence 456789999999999999999999999999974 000 00 0112234557899999987 566666
Q ss_pred CCC---CeeEEEEEEEEEEcceEEE-ecccccC-CCC-CC-----C-C---ccccccC-CCCeEEEEcCCCccceee-cc
Q 001079 762 PQK---PGSYVLGALTGHIGRLRFR-SHSFSKV-GPA-DS-----D-D---FMSYEKP-TRPILKVFNPRPLVDLAA-AI 824 (1162)
Q Consensus 762 ~~~---~G~y~l~si~i~ig~l~F~-s~~f~~~-~p~-~~-----~-~---~~~~e~~-~~p~~~v~~~~~~~~L~a-~~ 824 (1162)
... .|.+++.++.+.+|.-.|. ...|+.. +.. .. . . ..-.... .++++.|.|++|++++.+ .+
T Consensus 103 ~~~~~~~g~~~i~sv~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~I~p~pp~v~I~~~~~ 182 (554)
T PF07919_consen 103 PREQDVSGELEITSVTLQLGSDKFDLTLSWSFESSSSSSSFWWWQSSDGPKSRPIRKPRDQSSIRILPRPPKVSIKLPNH 182 (554)
T ss_pred ccccccCCcEEEEEEEEEEecCeEEEEEEeccccccccccccccccCCcceeeeccCCCCCCEEEEECCCCCeEEEeCCC
Confidence 666 9999999999999953332 1122221 000 00 0 0 0001001 467899999999999999 99
Q ss_pred cCCcccCceEEEEEEEEcCcccccceEEEEecC-CCCccccccceeeeccccccccccccCccccccccccchhhhcccc
Q 001079 825 SSPLLINEAQWVGIIVQPIDYSLKGAILQIDTG-PGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLH 903 (1162)
Q Consensus 825 ~~P~L~g~~q~v~l~v~sg~~~i~~~~L~l~~~-~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 903 (1162)
.+|+++||.+.|+|+|.++++....+++.+..- ++..-..... +..+... ...+...... .
T Consensus 183 ~~~~l~gE~~~i~i~I~n~e~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~---~~~~~~~~~~-------~ 244 (554)
T PF07919_consen 183 KPPALTGEFYPIPITISNNEDEEASGVLEVRLLHPSQLGVSSEE--------TEDLSQV---NWDSDKDDEP-------L 244 (554)
T ss_pred CCCeEcCCEEEEEEEEEcCCCccceeEEEEEEeccccccccccc--------Cccceec---ccccccccch-------h
Confidence 999999999999999999998885545544333 2211111100 0000000 0000000011 1
Q ss_pred cceeecCCCCCCceeEEEEEEEEeeccccCCCccccCccccccccceeEEEEee--e--ccccc--ce-eeeEEEEEeeC
Q 001079 904 DGRIQLPDWASNLTSILWIPIRAINNSLARGSSSVTPQRQSIVDGMRTIALKLQ--F--GVCHN--QI-FERTIAVHFTD 976 (1162)
Q Consensus 904 ~~~i~l~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~e~~~~~~i~~~--~--~~~~~--~i-~~~~i~l~f~~ 976 (1162)
...+++|.++++++....+++++...+ +. .+.+++. + . ... .+ +..++.+++..
T Consensus 245 ~~~~~lg~l~~~~s~~~~l~i~~~~~~----------------~~--~L~i~~~Y~l~~~-~~~~~~i~~~~~~~l~~~~ 305 (554)
T PF07919_consen 245 FLGIPLGELAPGSSITVTLYIRTSRPG----------------EY--ELSISVSYHLDVE-SDPETPISKTKTVQLPVIN 305 (554)
T ss_pred ccCcccccCCCCCcEEEEEEEEeCCce----------------eE--EEEEEEEEEEecC-CCCceeEEEeEEEeeeEEc
Confidence 256899999999999999999933311 22 2333333 1 1 111 11 44488999999
Q ss_pred CeEEEE----Eeee--------------------------------ccCCCceEEEEEEecccceeeEEecceeeccCCc
Q 001079 977 PFHVST----RIAD--------------------------------KCSDGTLLLQVILHSQVNASLTIYDAWLDLQDGF 1020 (1162)
Q Consensus 977 Pf~vs~----r~~s--------------------------------~~~~~~~~Lqv~l~s~~p~~l~i~~~~l~l~~~~ 1020 (1162)
||+++. |++. ...+.+++|+..+.+..||+|.|.+.+++.....
T Consensus 306 PF~~~y~~~~~~~~~~~~~p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~s~a~~~L~I~~~~l~~~~~~ 385 (554)
T PF07919_consen 306 PFEANYDFSPRFHPDPWDMPSPFDVDGSSDFQTLNPEPLTRDGILSVGLNQPWCLNSDIESFAPEPLEIEDISLEVLSSN 385 (554)
T ss_pred CEEeeeeEEeeeccCCccCCcccccccccccccccccccccccccccccCCCeEEEccceecCCCceEEEEEEEEEecCC
Confidence 995555 5542 1445567889999999999999999999998754
Q ss_pred cccccCCCCCC--ccccceEecCCCeeeEEEEE--eeCCCCCccccccccceeeEEEEEee
Q 001079 1021 VHTRQGDGRPT--SGFFPLVISSSSKAGILFSI--CLGKTTPEAEVEAVRRDSLLNIQYGI 1077 (1162)
Q Consensus 1021 ~~~~~~~~~p~--s~~~~~~l~~~~~as~~f~l--~~~~~~~~~~~~~~~~~~~f~i~y~~ 1077 (1162)
........+.. ....+.++++++++..+||+ .+.........+. ...+.|.|+|+|
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~-~~~g~~~I~WrR 445 (554)
T PF07919_consen 386 GGASCDVSSEDSSSPESGTVLQPGECREDQFCLRLDVQKLSLDDRRNV-TLLGSLVIKWRR 445 (554)
T ss_pred CceeeeeccccccCCCccceeCccccccccccccccccccccccCccc-eeEEEEEEEEEE
Confidence 43221111111 02356889999999999994 3333211222222 337999999999
No 4
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=99.42 E-value=7.3e-13 Score=146.91 Aligned_cols=99 Identities=34% Similarity=0.473 Sum_probs=95.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHH
Q 001079 551 SSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAEC 630 (1162)
Q Consensus 551 sS~e~F~~~Yl~Lt~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C 630 (1162)
...-++...+++|+++|+++|++.++.|++..++.+||.+||+.|||++|+.+|..++..|+.|||+.|...+|.++.+|
T Consensus 148 e~~~~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~C 227 (247)
T PF11817_consen 148 EKGVDHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLEC 227 (247)
T ss_pred ccccchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 35567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccchhHHHHHHHHhc
Q 001079 631 QKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 631 lk~L~~~~dYv~~~l~LLs 649 (1162)
++++++.++||.+|++|++
T Consensus 228 a~~~~~~~~~l~~~leLls 246 (247)
T PF11817_consen 228 AKRLGDVEDYLTTSLELLS 246 (247)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 9999999999999999985
No 5
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=97.62 E-value=0.0074 Score=67.44 Aligned_cols=115 Identities=16% Similarity=0.241 Sum_probs=84.2
Q ss_pred eeeeEEEEEeeCCeEEEEEeeeccCCC-------ceEEEEEEecccceeeEEecceeeccCCccccccC--CCCCC-ccc
Q 001079 965 IFERTIAVHFTDPFHVSTRIADKCSDG-------TLLLQVILHSQVNASLTIYDAWLDLQDGFVHTRQG--DGRPT-SGF 1034 (1162)
Q Consensus 965 i~~~~i~l~f~~Pf~vs~r~~s~~~~~-------~~~Lqv~l~s~~p~~l~i~~~~l~l~~~~~~~~~~--~~~p~-s~~ 1034 (1162)
.|-+.+...+.+||+|.++++. ..+. +.||++.+++.+.-+|.|.+..|+..++|...... +.... ...
T Consensus 103 tfRK~ykF~v~~PL~VktK~~~-~~~~~~~~~~~~~~LEaqlqN~s~~pl~Le~v~lep~~~~~~~~ln~~~~~~~~~~~ 181 (249)
T PF06159_consen 103 TFRKFYKFQVLNPLSVKTKVYN-LEDDSSLSPRERVFLEAQLQNISSGPLFLEKVKLEPSPGFKVTDLNWEPSGESSDGE 181 (249)
T ss_pred eEeeeeEEeCCCCcEEEEEEEe-cCCccccccceeEEEEEEEEecCCCceEEEEEEeecCCCceeEeccccccccccccc
Confidence 3566778889999999999999 6664 77999999999999999999999999987743322 10000 011
Q ss_pred -------cceEecCCCeeeEEEEEeeCCCCCccc--cccccceeeEEEEEeec-Cc
Q 001079 1035 -------FPLVISSSSKAGILFSICLGKTTPEAE--VEAVRRDSLLNIQYGIS-GK 1080 (1162)
Q Consensus 1035 -------~~~~l~~~~~as~~f~l~~~~~~~~~~--~~~~~~~~~f~i~y~~~-~~ 1080 (1162)
....|++++.-.++|||.....+.... .+-...-|.+.|.|+.+ |+
T Consensus 182 ~~~~~~~~~~~L~P~d~~qylF~l~~~~~~~~~~~~~~~~~~lGkL~I~WRs~~Ge 237 (249)
T PF06159_consen 182 FGGISSGSRPYLQPGDVRQYLFCLTPKPEGAQNDSGADGRTNLGKLDIVWRSNMGE 237 (249)
T ss_pred ccccccCCcceeCCCCEEEEEEEEEECCccccccccccCcceeeEEEEEEECCCCC
Confidence 235799999999999999987511111 11112259999999998 66
No 6
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=97.28 E-value=0.21 Score=67.84 Aligned_cols=280 Identities=20% Similarity=0.238 Sum_probs=171.3
Q ss_pred HHHHHHhcCCcchhHHhhHHHHHHHHhcC-C-HHHHHHHHHHHHhhhhc---------------CC-cchHHHHHHHHHH
Q 001079 567 AANNYHCSWWKRHGVVLDGEIAAVCFKHG-N-YDQAAKSYEKVCALYSG---------------EG-WQDLLAEVLPNLA 628 (1162)
Q Consensus 567 Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~g-d-y~kA~~~f~~~~~~Y~~---------------eg-W~~L~~~~L~~~a 628 (1162)
+.+.|...|-+|-...+..+++..+...- . .+....++..++..|+- .+ |..|-..+|+.++
T Consensus 451 lA~vy~~lG~~RK~AFvlR~l~~~~~~~l~~~~~s~~~lL~~~~~~Ygi~~~~~~~~~~~~~~~~~~W~~LQi~vL~~~I 530 (1185)
T PF08626_consen 451 LASVYGSLGFHRKKAFVLRELAVQLVPGLIHWHQSYRSLLEELCKGYGISLDPESSSEDSSKGSQSNWPSLQIDVLKECI 530 (1185)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHhccccCCcchHHHHHHHHHhccCcccCCccccccccccccccCCHHHHHHHHHHHH
Confidence 34789998955555566788888776411 1 12233477777777764 23 9999999999999
Q ss_pred HHHHHhccchhHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHh----cC--CCCC---------------cccc-----
Q 001079 629 ECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVISLAY----GE--MKDP---------------VPLD----- 682 (1162)
Q Consensus 629 ~Clk~L~~~~dYv~~~l~LLs~~~~~~s~~eR~~y~~ell~~a~----~~--l~~~---------------~~i~----- 682 (1162)
.+.+.|++...=++.++.||..+...++..+...+..++.+.+. .. +.-+ +|+.
T Consensus 531 ~~ae~l~D~~~~~~~~~~LL~~~~~~Ls~~EQ~~L~~~l~~~~~~~~~~~~~l~~~Ywdpflvr~v~l~~~iP~~~~i~~ 610 (1185)
T PF08626_consen 531 NIAEALGDFAGVLRFSSLLLRTYSPLLSPDEQIRLANNLQRTSAAANLGNSDLSAEYWDPFLVRDVKLESSIPLKPDILP 610 (1185)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhhhccCCcccccccCCCceeeeeecccCCCCccchhh
Confidence 99999999999999998888876566788888788888776661 11 1100 0110
Q ss_pred --------------CCCcee-eecC--CC---CCccccCCCCeEEEEEEEeCCCCceEeeeEEEEEEecccCCCCceEEe
Q 001079 683 --------------VSSLIT-FSGN--PG---PPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALN 742 (1162)
Q Consensus 683 --------------~s~l~~-~~~~--~~---~~~~~~~~d~~~L~V~l~s~LP~~I~id~v~l~L~~~~~~~~~~~~l~ 742 (1162)
-+.|++ |... .. ...-...+|.+.+.|++.|=++-+|++++|+|.-.+. .. .-
T Consensus 611 ~~~~~~~~~~~~~~~~pFYnPf~k~~~~~~~~~~~~~V~gE~~~v~VtLqNPf~fel~I~~I~L~~egv------~f-es 683 (1185)
T PF08626_consen 611 PHPRKSEASSQSINKGPFYNPFSKKSSSSSNKKEPLWVVGEPAEVKVTLQNPFKFELEISSISLSTEGV------PF-ES 683 (1185)
T ss_pred hhhhhhhhcccCCCCCCcCChhhcCCcccccccCccEEcCCeEEEEEEEECCccceEEEEEEEEEEcCC------cc-cc
Confidence 001111 1110 00 0122445788999999999999999999998866532 11 11
Q ss_pred ecCceEe-eCCCeE-EEEEcCCCCCeeEEEEEEEEEEcceE--EEecccccCC-----CCC---------CCC---cccc
Q 001079 743 TSTATVL-KPGRNT-ITVDLPPQKPGSYVLGALTGHIGRLR--FRSHSFSKVG-----PAD---------SDD---FMSY 801 (1162)
Q Consensus 743 s~~~~~L-kPG~Nk-i~l~~~~~~~G~y~l~si~i~ig~l~--F~s~~f~~~~-----p~~---------~~~---~~~~ 801 (1162)
....+.| .|...+ +++...+...|...+..+.++++++. +. ..+.... ... .+. .+..
T Consensus 684 ~~~s~~l~~p~s~~~v~L~g~P~~~G~L~I~G~~i~v~g~~~~~~-~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~ 762 (1185)
T PF08626_consen 684 YPVSIVLLPPNSTQTVRLSGTPLETGTLKITGCIIKVFGCREEFF-PIFKSEWGSIKGKKLKDKFRKGSRLDKPSPPLES 762 (1185)
T ss_pred ceeeeEecCCCcceEEEEEEEECccceEEEEEEEEEEccccccee-cccCcccchhhhhhcccccccccccccccccccc
Confidence 1123344 665433 67788889999999999999999962 11 0111110 000 000 0000
Q ss_pred c--cCCCCeEEEEcCCCccceeec--ccCC--cccCceEEEEEEEEcCcccc-cceEEEE
Q 001079 802 E--KPTRPILKVFNPRPLVDLAAA--ISSP--LLINEAQWVGIIVQPIDYSL-KGAILQI 854 (1162)
Q Consensus 802 e--~~~~p~~~v~~~~~~~~L~a~--~~~P--~L~g~~q~v~l~v~sg~~~i-~~~~L~l 854 (1162)
+ ....-.+.|+|+-|.+.+... ..++ +|-||.+.+.|++.+-+... .-..+++
T Consensus 763 ~~~~~~~l~i~VIp~qP~L~v~~~sl~~~~~mlleGE~~~~~ItL~N~S~~pvd~l~~sf 822 (1185)
T PF08626_consen 763 ESPKTKSLSIKVIPPQPLLEVKSSSLTQGALMLLEGEKQTFTITLRNTSSVPVDFLSFSF 822 (1185)
T ss_pred cccccCcceEEEECCCCeEEEEeccCCCcceEEECCcEEEEEEEEEECCccccceEEEEE
Confidence 0 011236778888785555443 1122 38899999999999998332 4444444
No 7
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.95 E-value=0.055 Score=61.55 Aligned_cols=88 Identities=22% Similarity=0.210 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhcCCcchhHHhhHHHHHHHHhc-CCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchh
Q 001079 561 LELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKH-GNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 639 (1162)
Q Consensus 561 l~Lt~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~-gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~d 639 (1162)
++..++|++.|...||.+.+-.+...+|.+|-.. |||++|..+|..++..|..+|...-...++..++.++-++++-++
T Consensus 94 i~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 94 IECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH
Confidence 4577899999999999999999999999999999 999999999999999999999888889999999999999997766
Q ss_pred HHHHHHHHh
Q 001079 640 YLLSCVRLL 648 (1162)
Q Consensus 640 Yv~~~l~LL 648 (1162)
=+...-++.
T Consensus 174 A~~~~e~~~ 182 (282)
T PF14938_consen 174 AIEIYEEVA 182 (282)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554444
No 8
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.66 E-value=0.32 Score=43.68 Aligned_cols=66 Identities=29% Similarity=0.334 Sum_probs=52.5
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCC-cchHHHHHHHHHHHHHHHhccchh---HHHHHHHH
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEG-WQDLLAEVLPNLAECQKILNDEAG---YLLSCVRL 647 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~eg-W~~L~~~~L~~~a~Clk~L~~~~d---Yv~~~l~L 647 (1162)
.+...||..|+.+|+|++|..+|..++..+..-| .+.....++..++.|+..+++.++ |..-++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4568899999999999999999999999977666 555568899999999999998755 44444433
No 9
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=92.67 E-value=0.56 Score=53.05 Aligned_cols=71 Identities=13% Similarity=0.056 Sum_probs=61.6
Q ss_pred hhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhccCC
Q 001079 579 HGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDK 652 (1162)
Q Consensus 579 sa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs~~~ 652 (1162)
.+.....-+|..||..|+|..|..+|..++..|..+.|. ...+.+++.|+..+++.++-..+.-+++..+.
T Consensus 178 ~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~---~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 178 YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA---ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 334567899999999999999999999999999999998 57788889999999999888888877776654
No 10
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.43 E-value=36 Score=44.42 Aligned_cols=245 Identities=16% Similarity=0.177 Sum_probs=130.6
Q ss_pred cCCHHHHHHHHHHHHhhhh-----------cCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhccCCCCCCHHHHHH
Q 001079 594 HGNYDQAAKSYEKVCALYS-----------GEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQA 662 (1162)
Q Consensus 594 ~gdy~kA~~~f~~~~~~Y~-----------~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs~~~~~~s~~eR~~ 662 (1162)
.+||..-...+-..+.-|+ +.-|..|--.+|........+.++-+.-++.+..||..+--.++..+...
T Consensus 524 ~~dyKt~~~~l~~lLe~~g~e~~~~~d~~sq~~w~~LQ~kvL~eii~~a~ragd~~aa~~~~s~Ll~~yypll~sS~q~~ 603 (1235)
T KOG1953|consen 524 YGDYKTDGSLLNPLLEKWGSEAKINVDDPSQSTWSNLQFKVLNEIISLADRAGDYRAALLLISLLLLTYYPLLSSSQQIS 603 (1235)
T ss_pred CccccccHHHHHHHHHhccccccCCcCccccccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhccChhhhHH
Confidence 3455555555555555553 22399988888888777777777776655555556655434466667777
Q ss_pred HHHHHHHHHhcCC-----CCCccc-------c--------------------------------CCCc----eeeecCCC
Q 001079 663 FQSEVISLAYGEM-----KDPVPL-------D--------------------------------VSSL----ITFSGNPG 694 (1162)
Q Consensus 663 y~~ell~~a~~~l-----~~~~~i-------~--------------------------------~s~l----~~~~~~~~ 694 (1162)
.++++.+.+...- -+|..+ | .+.| |.+..+..
T Consensus 604 Lfk~l~n~~~~~~s~ts~~~~i~~~d~~iild~~~lt~fPliss~~vlel~~Nrart~~pn~~e~spFiytpfsk~~dN~ 683 (1235)
T KOG1953|consen 604 LFKALRNTYLFASSATSYWDPIHINDPVIILDPFMLTDFPLISSSEVLELIHNRARTGLPNSIEKSPFIYTPFSKRQDNN 683 (1235)
T ss_pred HHHHHHhHHhhcccccccccceEecCccEecCcccccccccccChhHHHHHhcccccCCCcccccCceEeccccccccCc
Confidence 8888776553210 011110 0 0111 00111100
Q ss_pred -CCccccCCCCeEEEEEEEeCCCCceEeeeEEEEEEecccCCCCceEEeecCceEeeCCC--eEEEEEcCCCCCeeEEEE
Q 001079 695 -PPLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGR--NTITVDLPPQKPGSYVLG 771 (1162)
Q Consensus 695 -~~~~~~~~d~~~L~V~l~s~LP~~I~id~v~l~L~~~~~~~~~~~~l~s~~~~~LkPG~--Nki~l~~~~~~~G~y~l~ 771 (1162)
+.+-...++++.+.|+++|-+--+++++.+.|.-.+. +-.. ..-...+.|.. -.+++...+...|-..+.
T Consensus 684 ~~~LvwVvdepvef~v~v~Np~~fdl~V~Di~L~~egv----nF~~---~~vs~~~Ppns~~e~Irl~g~P~e~gpl~i~ 756 (1235)
T KOG1953|consen 684 QSKLVWVVDEPVEFSVYVRNPLSFDLEVQDIHLETEGV----NFKC---SHVSFTMPPNSIAERIRLTGTPTETGPLHIV 756 (1235)
T ss_pred cceEEEEeCCceEEEEEEcCccceeEEEeeEEEEeccc----ccee---eeeeeecCcccccceEEEeccccccCceeee
Confidence 1222345788999999999998899999988776543 2111 11223344433 357888778888875544
Q ss_pred EEEEEEcceEEEecccccCCCCCCCCccccccC------CCCeEEEEcCCCccceeecccCCc-----ccCceEEEEEEE
Q 001079 772 ALTGHIGRLRFRSHSFSKVGPADSDDFMSYEKP------TRPILKVFNPRPLVDLAAAISSPL-----LINEAQWVGIIV 840 (1162)
Q Consensus 772 si~i~ig~l~F~s~~f~~~~p~~~~~~~~~e~~------~~p~~~v~~~~~~~~L~a~~~~P~-----L~g~~q~v~l~v 840 (1162)
-.++..=++.-.+.-|...++.-.+....-+.+ .+--+.+.|+-|..-|......|- +.|....+.|+|
T Consensus 757 gy~v~cfg~~~~lq~f~~~gd~~~s~~v~~e~~kl~~vyl~~~i~ilP~~P~~~l~~d~k~~s~~~ivy~Gq~~d~~Itv 836 (1235)
T KOG1953|consen 757 GYRVKCFGCEPILQYFYEAGDKHKSLHVYLEKSKLVNVYLRSLITILPLWPYFPLKKDLKTKSFDCIVYAGQPTDLSITV 836 (1235)
T ss_pred eEEEEEeeechHHHHHHhcccccCCccceeccchhheeecccccccCCCcccchhhhcccCCCccEEEEcCCcceEEEEE
Confidence 444444332211112223233111110111101 111244556666555555554443 566777888899
Q ss_pred EcCcc
Q 001079 841 QPIDY 845 (1162)
Q Consensus 841 ~sg~~ 845 (1162)
++.+.
T Consensus 837 ~N~s~ 841 (1235)
T KOG1953|consen 837 QNLSS 841 (1235)
T ss_pred EecCc
Confidence 88875
No 11
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=89.20 E-value=0.35 Score=49.83 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=37.1
Q ss_pred eecccCCcccccccccCCCCCc----cccceEEEEEEEEEeCcccc
Q 001079 1111 LQRPVLDPTLAIGFLALPSDGL----RVGQLVSMKWRVERLKDFEE 1152 (1162)
Q Consensus 1111 ~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~rl~~~~~ 1152 (1162)
|..|+++.+.+|.|.+.+..+. ||||.|.|+|+|+|++.-+.
T Consensus 2 V~vP~~~~l~~v~~~~~~~~~~~~~~~vGqpi~~~l~I~~~~~W~~ 47 (147)
T PF12584_consen 2 VDVPSLQILHTVEFRLQSPPQSPPPCRVGQPIPAELRIKNSRKWSS 47 (147)
T ss_pred CCCCCcceEEEEEEEECCCccCCcceEeCCeEEEEEEEEEcccCCc
Confidence 5679999999999999999887 99999999999999865444
No 12
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.84 E-value=1.2 Score=48.95 Aligned_cols=67 Identities=19% Similarity=0.164 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhcCCcchhHHhhHHHHHHHHh-cCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHH
Q 001079 562 ELTKGAANNYHCSWWKRHGVVLDGEIAAVCFK-HGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLA 628 (1162)
Q Consensus 562 ~Lt~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~-~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a 628 (1162)
.-+++||+.|++-||.|+|..-+.+||++|=. +-|+++|..+|..+..+|..+--..+...-+...|
T Consensus 94 ~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA 161 (288)
T KOG1586|consen 94 NCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVA 161 (288)
T ss_pred HHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHH
Confidence 35688999999999999999999999999876 48999999999999999999988876655443333
No 13
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=87.47 E-value=3.6 Score=41.04 Aligned_cols=83 Identities=16% Similarity=0.030 Sum_probs=64.2
Q ss_pred HHHHHHHHHhc---C-CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchh
Q 001079 564 TKGAANNYHCS---W-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 639 (1162)
Q Consensus 564 t~~Ai~~Yk~a---~-R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~d 639 (1162)
-++|+.+|..+ | ---....+..++|.-|.+.|+|++|+..|......|.+..|+. .+-..++-|+..+++.++
T Consensus 17 ~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~---~l~~f~Al~L~~~gr~~e 93 (120)
T PF12688_consen 17 EEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNA---ALRVFLALALYNLGRPKE 93 (120)
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccH---HHHHHHHHHHHHCCCHHH
Confidence 35666666664 2 0011124567899999999999999999999999998888874 444567779999999999
Q ss_pred HHHHHHHHhc
Q 001079 640 YLLSCVRLLS 649 (1162)
Q Consensus 640 Yv~~~l~LLs 649 (1162)
=+...+..|.
T Consensus 94 Al~~~l~~la 103 (120)
T PF12688_consen 94 ALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHH
Confidence 9999988775
No 14
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=87.17 E-value=1.4 Score=39.52 Aligned_cols=51 Identities=12% Similarity=0.183 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhcCC-cchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhh
Q 001079 562 ELTKGAANNYHCSWW-KRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYS 612 (1162)
Q Consensus 562 ~Lt~~Ai~~Yk~a~R-~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~ 612 (1162)
+..++|+..+...|. ......+...||..|+.+|+|++|..+|..++..+.
T Consensus 26 ~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 26 DYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 466677777667773 233456699999999999999999999999998764
No 15
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=86.24 E-value=8 Score=44.02 Aligned_cols=111 Identities=18% Similarity=0.146 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCC-cchHHHHHHHHHHHHHHHhccchhH
Q 001079 562 ELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEG-WQDLLAEVLPNLAECQKILNDEAGY 640 (1162)
Q Consensus 562 ~Lt~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~eg-W~~L~~~~L~~~a~Clk~L~~~~dY 640 (1162)
++-.+|++.|...++.+.+..+...+|.++.+.|+|++|..+|..+...+.+.+ ...=....+...+=|+-.+++...-
T Consensus 136 ~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A 215 (282)
T PF14938_consen 136 EYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAA 215 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHH
Confidence 466788899999998999999999999999999999999999999999887654 2211223333334455455543222
Q ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhc
Q 001079 641 LLSCVRLLSLDKGLFSTKERQAFQSEVISLAYG 673 (1162)
Q Consensus 641 v~~~l~LLs~~~~~~s~~eR~~y~~ell~~a~~ 673 (1162)
-+..-+....+.+-.+.+| -.+..+|++....
T Consensus 216 ~~~~~~~~~~~~~F~~s~E-~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 216 RKALERYCSQDPSFASSRE-YKFLEDLLEAYEE 247 (282)
T ss_dssp HHHHHHHGTTSTTSTTSHH-HHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCCCCCCcHH-HHHHHHHHHHHHh
Confidence 2222222222223222323 3578888876654
No 16
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=86.23 E-value=2.3 Score=36.64 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=44.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 586 EIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 586 dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
++|..++..|+|++|...|..++..+-. -...+..++.|+..+++.++=+...-+++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD------NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5789999999999999999999998744 456777888999888888766655444443
No 17
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=86.18 E-value=4.3 Score=38.49 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=52.9
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhccC
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLD 651 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs~~ 651 (1162)
.....+|..++..|+|+.|..+|..++..|....+. ..++..++.|+.++++.++-+...-+++..+
T Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 40 NAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA---PDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc---cHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 456779999999999999999999999988655443 2456778889999999887777766666543
No 18
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=85.63 E-value=1.4 Score=33.99 Aligned_cols=28 Identities=25% Similarity=0.516 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhh
Q 001079 585 GEIAAVCFKHGNYDQAAKSYEKVCALYS 612 (1162)
Q Consensus 585 ~dLA~lyy~~gdy~kA~~~f~~~~~~Y~ 612 (1162)
..||.+|.++|+|++|+.+|..++..-.
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 5799999999999999999999775443
No 19
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=85.39 E-value=0.76 Score=39.89 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcC-CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhc-CCcchH
Q 001079 564 TKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSG-EGWQDL 619 (1162)
Q Consensus 564 t~~Ai~~Yk~a~-R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~-egW~~L 619 (1162)
.+.|++.|+++- +...-..+...||..|++.|+|++|..+|..+.....+ ..|..+
T Consensus 7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 7 YDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 355666676653 33334456778999999999999999999999988777 334433
No 20
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.48 E-value=5.4 Score=44.94 Aligned_cols=73 Identities=14% Similarity=0.122 Sum_probs=62.5
Q ss_pred chhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhccCCC
Q 001079 578 RHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKG 653 (1162)
Q Consensus 578 Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs~~~~ 653 (1162)
-.+-..+.=||+.+|.+|||..|+.+|-.+...|..+.|. ..+|.+++.|+..|+..++==.+.-++...+.+
T Consensus 175 ~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA---pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 175 TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA---PDALLKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 3344567889999999999999999999999999999998 699999999999999998766666666666654
No 21
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=83.60 E-value=2.3 Score=36.95 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=44.5
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhc-cchhHHHHHHHH
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILN-DEAGYLLSCVRL 647 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~-~~~dYv~~~l~L 647 (1162)
.-..+|..+++.|+|++|+.+|..++..-..+ ..++...+.|+.+++ +.++-+....+.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~------~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN------AEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH------HHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 35688999999999999999999999975332 347778888999998 555544444333
No 22
>COG1470 Predicted membrane protein [Function unknown]
Probab=83.18 E-value=97 Score=37.69 Aligned_cols=164 Identities=19% Similarity=0.230 Sum_probs=91.2
Q ss_pred CCCCeEEEEEEEeCCCCceEeeeEEEEEEecccCCCCceEEe-----ecCceEeeCCCeE-EEEE---cCCCCCeeEEEE
Q 001079 701 DGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALN-----TSTATVLKPGRNT-ITVD---LPPQKPGSYVLG 771 (1162)
Q Consensus 701 ~~d~~~L~V~l~s~LP~~I~id~v~l~L~~~~~~~~~~~~l~-----s~~~~~LkPG~Nk-i~l~---~~~~~~G~y~l~ 771 (1162)
.++...+.|+|.|+--.+ ++..|.+.+- +++-..-| .-+.+.|+||..+ ++++ .....+|.|.+.
T Consensus 282 ~~~t~sf~V~IeN~g~~~---d~y~Le~~g~---pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~na~pG~Ynv~ 355 (513)
T COG1470 282 PSTTASFTVSIENRGKQD---DEYALELSGL---PEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLNATPGTYNVT 355 (513)
T ss_pred cCCceEEEEEEccCCCCC---ceeEEEeccC---CCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCCCCCCceeEE
Confidence 456678888888874232 5666666531 12221112 2346789999877 6665 445689999753
Q ss_pred EEEEEEcc--eEEEecccccCCCCCCCCccccccCCCCeEEEEcCCCccceeecccCCcccCceEEEEEEEEcCcccc-c
Q 001079 772 ALTGHIGR--LRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSL-K 848 (1162)
Q Consensus 772 si~i~ig~--l~F~s~~f~~~~p~~~~~~~~~e~~~~p~~~v~~~~~~~~L~a~~~~P~L~g~~q~v~l~v~sg~~~i-~ 848 (1162)
-. +.-++ ..+.. ...... .++. .-+.+..-.-.+++.+| +++.+++.|.+-+.+. +
T Consensus 356 I~-A~s~s~v~~e~~--lki~~~------g~~~----~~v~l~~g~~~lt~taG--------ee~~i~i~I~NsGna~Lt 414 (513)
T COG1470 356 IT-ASSSSGVTRELP--LKIKNT------GSYN----ELVKLDNGPYRLTITAG--------EEKTIRISIENSGNAPLT 414 (513)
T ss_pred EE-Eeccccceeeee--EEEEec------cccc----eeEEccCCcEEEEecCC--------ccceEEEEEEecCCCccc
Confidence 32 22221 11110 000000 0111 01111111112344444 9999999998877666 9
Q ss_pred ceEEEEecCCCCccccccceeeeccccccccccccCccccccccccchhhhcccccceeecCCCCCCceeEEEEEEEEee
Q 001079 849 GAILQIDTGPGLTIEESHFVEMESHIKLSNLENCHNIQKDCSLDINKDFERLHLHDGRIQLPDWASNLTSILWIPIRAIN 928 (1162)
Q Consensus 849 ~~~L~l~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~l~~~~ 928 (1162)
|.+|++..+.|..++.+.. .+|+++|++...+.+.+++-.
T Consensus 415 dIkl~v~~PqgWei~Vd~~----------------------------------------~I~sL~pge~~tV~ltI~vP~ 454 (513)
T COG1470 415 DIKLTVNGPQGWEIEVDES----------------------------------------TIPSLEPGESKTVSLTITVPE 454 (513)
T ss_pred eeeEEecCCccceEEECcc----------------------------------------cccccCCCCcceEEEEEEcCC
Confidence 9999998888866654321 346778888877777777665
Q ss_pred ccc
Q 001079 929 NSL 931 (1162)
Q Consensus 929 ~~~ 931 (1162)
+..
T Consensus 455 ~a~ 457 (513)
T COG1470 455 DAG 457 (513)
T ss_pred CCC
Confidence 444
No 23
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=82.65 E-value=5.2 Score=34.53 Aligned_cols=56 Identities=25% Similarity=0.253 Sum_probs=38.6
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHH
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLS 643 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~ 643 (1162)
.+...+|..|+..|++++|..+|..++....... .++..++.|+...++.++-...
T Consensus 35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~ 90 (100)
T cd00189 35 DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------KAYYNLGLAYYKLGKYEEALEA 90 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch------hHHHHHHHHHHHHHhHHHHHHH
Confidence 4567888888888999999988888887665554 4445566666666655443333
No 24
>KOG1931 consensus Putative transmembrane protein [General function prediction only]
Probab=82.46 E-value=0.31 Score=62.54 Aligned_cols=254 Identities=16% Similarity=0.133 Sum_probs=125.0
Q ss_pred hHHHHhhcCHHHHHHHHHHHHHHHHHHHHhcC--CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHH
Q 001079 544 PNLLKSLSSVEEFEQKYLELTKGAANNYHCSW--WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLA 621 (1162)
Q Consensus 544 ~~L~~ALsS~e~F~~~Yl~Lt~~Ai~~Yk~a~--R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~ 621 (1162)
+.|+....-...|.+..-.+++.|.+.|+++. +.|-.....-.+...|++=..|..|..+....+..|...+|....-
T Consensus 410 e~l~~~~~~~~~l~d~r~~~~ke~~S~~~k~~~~~~~~~s~~k~~~~l~~~~~~~y~~~~rl~~ar~~~~d~~N~y~~~~ 489 (1156)
T KOG1931|consen 410 EQLKETFVLSTGLLDNRPTLTKEALSLFNKLEEALQRIVSFLKHYLGLLKAQISKYEEAVRLRLARYVGLDLGNFYSILK 489 (1156)
T ss_pred cccceEeeehhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcchhhhHhhhc
Confidence 33333444444444445555555555555543 3333334455566667777788889998888888888888886553
Q ss_pred ---HHHHHHHHHHHH--hccchhHHHHHHHHhccCCCCCCH----HHHHHHHHHHHHHHhcCCCCCccccCCCceeeecC
Q 001079 622 ---EVLPNLAECQKI--LNDEAGYLLSCVRLLSLDKGLFST----KERQAFQSEVISLAYGEMKDPVPLDVSSLITFSGN 692 (1162)
Q Consensus 622 ---~~L~~~a~Clk~--L~~~~dYv~~~l~LLs~~~~~~s~----~eR~~y~~ell~~a~~~l~~~~~i~~s~l~~~~~~ 692 (1162)
..-..+..|++. ++.+...+...+..|++.-..+.. .....++....++... ..+.....+-+++.+..+
T Consensus 490 ~p~~~v~~~t~~~k~~~~e~wa~~~s~t~~~l~~f~~~L~~~~~~~k~~~~ia~~~~L~~~-~r~h~~~k~l~~~~~~~~ 568 (1156)
T KOG1931|consen 490 IPQKAVDSLTHCLKLDLLEIWAEPVSATLVLLANFLNILGLCKAYDKTESSIAKFHDLQEL-NRKHLMYKLLGLFEVFLN 568 (1156)
T ss_pred ccchhhhhhhccCcchhhhhccchhHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhHHHHHH-HHHHHHHHHHhHHHhhhc
Confidence 122234445442 444444333333333321000000 0000111111111110 011111122333333322
Q ss_pred CCCCccccCCCCeEEEEEEEeC-CCCceEeeeEEEEEEecccCCCCceEEeecCceEe-eCCCeEEEEEcCCCCCeeEEE
Q 001079 693 PGPPLELCDGDPGTLSVTVWSG-FPDDITVDTLSLTLMATYNADEGAKALNTSTATVL-KPGRNTITVDLPPQKPGSYVL 770 (1162)
Q Consensus 693 ~~~~~~~~~~d~~~L~V~l~s~-LP~~I~id~v~l~L~~~~~~~~~~~~l~s~~~~~L-kPG~Nki~l~~~~~~~G~y~l 770 (1162)
. +.+......-...|...++ .|.+|++-.+++.... +....+..-+..+ .-+.|+..+.|+.+..|.|.+
T Consensus 569 s--~~hl~~~~~~n~~v~~~~h~~v~Diev~~~~~~~~~------~~~~s~~~v~~L~~~~~v~~~~~~C~di~~~~~~l 640 (1156)
T KOG1931|consen 569 S--KVHLARANVHNYEVNLDSHGFVLDIEVVTMKVKCMD------GDVISQGPVDFLYKSIVVNKLILECRDIMYGEAEL 640 (1156)
T ss_pred c--hhhhhcccchhhhhhhhhccccceeEEeeccceeec------ceeeeccchHhhHhhhhhhhHHHHHHhhccchhhh
Confidence 2 2223323333334444434 6777776666554432 1111111111112 246788889999999999999
Q ss_pred EEEEEEEcceEEEecccccCCCCCCCCccccccCCCCeEEEEcCCC
Q 001079 771 GALTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRP 816 (1162)
Q Consensus 771 ~si~i~ig~l~F~s~~f~~~~p~~~~~~~~~e~~~~p~~~v~~~~~ 816 (1162)
.+.++++.++.|.+ .| |..|++ ....+.+.+..|.+
T Consensus 641 ~s~~v~l~gi~~~~-~~----~~~q~e-----~~s~~~iem~~~tk 676 (1156)
T KOG1931|consen 641 LSFEVILEGITFVK-EF----PVNQDE-----LISLPEIEMKNPTK 676 (1156)
T ss_pred eeeeeEeecccccc-cc----ccchhh-----hccchhheeecCcc
Confidence 99999999988763 33 433333 34445666665543
No 25
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.93 E-value=1.8 Score=31.78 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=27.1
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhhhc
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSG 613 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~ 613 (1162)
...+|..|+..|++++|..+|..++..|-+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 467999999999999999999999988864
No 26
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=81.18 E-value=2.1 Score=39.14 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=39.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHH
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSC 644 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~ 644 (1162)
...||..||+.|+|++|..++.. . .+.... .....++++|+.+|++.++=+++.
T Consensus 28 ~~~la~~~~~~~~y~~A~~~~~~-~-~~~~~~-----~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 28 LYNLAQCYFQQGKYEEAIELLQK-L-KLDPSN-----PDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHC-H-THHHCH-----HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH-h-CCCCCC-----HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44589999999999999999988 2 222222 344556799999999988766643
No 27
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.56 E-value=3.7 Score=31.70 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=25.5
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhhhc
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSG 613 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~ 613 (1162)
....||..|+.+|+|++|..++..++..+..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 4678999999999999999999999987653
No 28
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=78.39 E-value=19 Score=41.65 Aligned_cols=84 Identities=25% Similarity=0.242 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHH
Q 001079 553 VEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQK 632 (1162)
Q Consensus 553 ~e~F~~~Yl~Lt~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk 632 (1162)
+++|.+ =.++.++|+..-++|- +.+..||.++...|+|++|+.-+..+..-= ....+.++.++.+|+.
T Consensus 193 ~~~~d~-A~~~l~kAlqa~~~cv------RAsi~lG~v~~~~g~y~~AV~~~e~v~eQn-----~~yl~evl~~L~~~Y~ 260 (389)
T COG2956 193 SSDVDR-ARELLKKALQADKKCV------RASIILGRVELAKGDYQKAVEALERVLEQN-----PEYLSEVLEMLYECYA 260 (389)
T ss_pred hhhHHH-HHHHHHHHHhhCccce------ehhhhhhHHHHhccchHHHHHHHHHHHHhC-----hHHHHHHHHHHHHHHH
Confidence 344444 2345555555444433 567889999999999999999999998521 2234689999999999
Q ss_pred HhccchhHHHHHHHHh
Q 001079 633 ILNDEAGYLLSCVRLL 648 (1162)
Q Consensus 633 ~L~~~~dYv~~~l~LL 648 (1162)
++|+.+++.....+..
T Consensus 261 ~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 261 QLGKPAEGLNFLRRAM 276 (389)
T ss_pred HhCCHHHHHHHHHHHH
Confidence 9999977665554433
No 29
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=77.52 E-value=3.8 Score=30.31 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=24.8
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhhh
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYS 612 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~ 612 (1162)
-..||..|++.|+|++|...|..++..+.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 46799999999999999999999987654
No 30
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=74.09 E-value=5.9 Score=29.52 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=24.4
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALY 611 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y 611 (1162)
+-..+|..|+.+|+|++|+.+|..++...
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 35679999999999999999999998753
No 31
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=73.41 E-value=10 Score=32.69 Aligned_cols=59 Identities=25% Similarity=0.292 Sum_probs=42.9
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLL 648 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LL 648 (1162)
...+|..++..|+|++|..+|..++..+.... ..+..++.|+...++.++-+...-+.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA------DAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999998776553 445567777777666655444443333
No 32
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=70.14 E-value=11 Score=32.40 Aligned_cols=50 Identities=16% Similarity=0.172 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcC-CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhh
Q 001079 563 LTKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYS 612 (1162)
Q Consensus 563 Lt~~Ai~~Yk~a~-R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~ 612 (1162)
-.+.|++.|..+- +..........+|..++++|+|++|..+|..++..+-
T Consensus 12 ~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 12 DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3456777777753 3444556789999999999999999999999887543
No 33
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=69.39 E-value=6.7 Score=42.39 Aligned_cols=52 Identities=27% Similarity=0.295 Sum_probs=45.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccch
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEA 638 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~ 638 (1162)
-..+|.+|+++|.|..|...|..++..|.+..|. -..|..+++++.+|+..+
T Consensus 144 e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~---~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAA---EEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHH---HHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchH---HHHHHHHHHHHHHhCChH
Confidence 4568999999999999999999999999999997 468888999999988874
No 34
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=68.45 E-value=48 Score=41.15 Aligned_cols=106 Identities=20% Similarity=0.136 Sum_probs=80.9
Q ss_pred chHHHHhhcCHHHHHHHHHHHHHHHHHHHHhc-C-CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhh--cCCcch
Q 001079 543 NPNLLKSLSSVEEFEQKYLELTKGAANNYHCS-W-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYS--GEGWQD 618 (1162)
Q Consensus 543 ~~~L~~ALsS~e~F~~~Yl~Lt~~Ai~~Yk~a-~-R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~--~egW~~ 618 (1162)
...|-.++-+...|.+.. .+++.|++.|++- + ....+.....++|..+.++++|+.|..|+.+..+-|. -.-=+.
T Consensus 286 l~nLa~ly~~~GKf~EA~-~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 286 LNNLAVLYYKQGKFAEAE-EYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHhccCChHHHH-HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 455666777778887774 4889999999992 1 3444455688999999999999999999999999887 223344
Q ss_pred HHHHHHHHHHHHHHHhccchh---HHHHHHHHhc
Q 001079 619 LLAEVLPNLAECQKILNDEAG---YLLSCVRLLS 649 (1162)
Q Consensus 619 L~~~~L~~~a~Clk~L~~~~d---Yv~~~l~LLs 649 (1162)
....+-..+++|++++|+..+ +.+.++..+.
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~ 398 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILR 398 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 567888999999999999854 5566665553
No 35
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=68.33 E-value=9.9 Score=28.17 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=25.4
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALY 611 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y 611 (1162)
+...+|.+|..+|++++|..+|..++..-
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 35678999999999999999999998754
No 36
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=68.23 E-value=14 Score=32.30 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=44.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 587 IAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 587 LA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
|+..|++.++|++|...+..++.....+ ...+..++.|+.++++..+=+...-+.+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDD------PELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCccc------chhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678999999999999999999986663 34455688899999998776666655554
No 37
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=67.51 E-value=38 Score=44.27 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhh-----cCCcchHHHHHHHHHHHHHHHhc
Q 001079 561 LELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYS-----GEGWQDLLAEVLPNLAECQKILN 635 (1162)
Q Consensus 561 l~Lt~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~-----~egW~~L~~~~L~~~a~Clk~L~ 635 (1162)
+....+|+..+-..++. .---+.-.+|.+||++|++++|...|.++..... ++| ..+...+.=.+++|+.+|.
T Consensus 433 L~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~-~~~~lt~~YNlarl~E~l~ 510 (1018)
T KOG2002|consen 433 LDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG-KSTNLTLKYNLARLLEELH 510 (1018)
T ss_pred HHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc-ccchhHHHHHHHHHHHhhh
Confidence 55667777777777755 4344578999999999999999999999998744 344 3455556667788887764
Q ss_pred c
Q 001079 636 D 636 (1162)
Q Consensus 636 ~ 636 (1162)
+
T Consensus 511 ~ 511 (1018)
T KOG2002|consen 511 D 511 (1018)
T ss_pred h
Confidence 4
No 38
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=66.94 E-value=30 Score=32.63 Aligned_cols=51 Identities=25% Similarity=0.244 Sum_probs=44.4
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHH
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQK 632 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk 632 (1162)
.....+|.+++..|++++|...+..++..-++.+...-....|.-++++.+
T Consensus 42 ~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~~l~~ 92 (94)
T PF12862_consen 42 YALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLANLLK 92 (94)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhh
Confidence 346779999999999999999999999999999999888777777777654
No 39
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=66.27 E-value=17 Score=39.56 Aligned_cols=60 Identities=23% Similarity=0.180 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q 001079 585 GEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRL 647 (1162)
Q Consensus 585 ~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~L 647 (1162)
..+|.+|+++|+|.+|...|..++..|....|. ...+..++.++.++++.++.+...-.|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPAT---EEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 478899999999999999999999999887554 566778889999999998888765433
No 40
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=65.99 E-value=41 Score=32.95 Aligned_cols=61 Identities=21% Similarity=0.192 Sum_probs=42.5
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLL 648 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LL 648 (1162)
.+...+|..|+..|+|..|..+|..+..... +.| .....++.|+..+++.++=+...-+.+
T Consensus 52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 52 RYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDP-----RPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCh-----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4467889999999999999999999887642 222 334557788888888765333333333
No 41
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=64.56 E-value=72 Score=34.40 Aligned_cols=56 Identities=20% Similarity=0.178 Sum_probs=40.8
Q ss_pred CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHh
Q 001079 576 WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKIL 634 (1162)
Q Consensus 576 R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L 634 (1162)
....+......+|..||..|||..|...|...+..|-.+... -..+-+.+.|+.++
T Consensus 37 ~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~---~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 37 NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA---DYALYMLGLSYYKQ 92 (203)
T ss_dssp TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH---HHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch---hhHHHHHHHHHHHh
Confidence 345566677899999999999999999999999999998864 34455555565543
No 42
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=64.30 E-value=27 Score=39.08 Aligned_cols=96 Identities=15% Similarity=0.121 Sum_probs=67.2
Q ss_pred HHHHhhcCHHHHHHHHHH--HHHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHH
Q 001079 545 NLLKSLSSVEEFEQKYLE--LTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAE 622 (1162)
Q Consensus 545 ~L~~ALsS~e~F~~~Yl~--Lt~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~ 622 (1162)
..+.|+.+=+.|-+.|=+ ....|-..-..+ |.+-|.+ -..+|.+|+++|+|..|+.=|..++..|.+.... -.
T Consensus 139 ~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l-~~~la~~-e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~---~e 213 (243)
T PRK10866 139 HARAAFRDFSKLVRGYPNSQYTTDATKRLVFL-KDRLAKY-ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQAT---RD 213 (243)
T ss_pred HHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchH---HH
Confidence 345565555555554432 222221111111 2333333 3489999999999999999999999999999986 68
Q ss_pred HHHHHHHHHHHhccchhHHHHHH
Q 001079 623 VLPNLAECQKILNDEAGYLLSCV 645 (1162)
Q Consensus 623 ~L~~~a~Clk~L~~~~dYv~~~l 645 (1162)
.|..+.+.+.+||..+++-.+.-
T Consensus 214 al~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 214 ALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHcCChHHHHHHHH
Confidence 88899999999999988877664
No 43
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=64.07 E-value=16 Score=44.08 Aligned_cols=62 Identities=13% Similarity=0.060 Sum_probs=51.3
Q ss_pred CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccc
Q 001079 576 WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDE 637 (1162)
Q Consensus 576 R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~ 637 (1162)
+.-+....+.-||.++|-.|||+.|+++|..+-.+|..++=|.-....++|.+-|+-..+..
T Consensus 203 ~~~S~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~ 264 (414)
T PF12739_consen 203 SADSPEAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQS 264 (414)
T ss_pred CCCChHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCC
Confidence 34556677888999999999999999999999999998884444466889999999876643
No 44
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=61.86 E-value=11 Score=25.64 Aligned_cols=28 Identities=32% Similarity=0.438 Sum_probs=24.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALY 611 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y 611 (1162)
...+|..|++.|+|++|...|..++...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 4678999999999999999999887643
No 45
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=59.65 E-value=16 Score=31.47 Aligned_cols=52 Identities=27% Similarity=0.250 Sum_probs=42.1
Q ss_pred HhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 592 FKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 592 y~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
+..|+|++|..+|..++..+... ..+...+++|+.+.|+.++-...+-+++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDN------PEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTS------HHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57899999999999999988773 45556799999999999888877765554
No 46
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=58.45 E-value=63 Score=38.23 Aligned_cols=79 Identities=16% Similarity=0.063 Sum_probs=53.2
Q ss_pred HHHHHHHHhcC-CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHH
Q 001079 565 KGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLS 643 (1162)
Q Consensus 565 ~~Ai~~Yk~a~-R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~ 643 (1162)
+.|+.+|..+= ..-....+...+|..|+++|+|+.|+..+..++...... ...+..++.|+..+++.++-+..
T Consensus 19 ~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~------~~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 19 ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL------AKAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHhCCHHHHHHH
Confidence 35555555542 111222457899999999999999999999999876543 23445667788888887665555
Q ss_pred HHHHhc
Q 001079 644 CVRLLS 649 (1162)
Q Consensus 644 ~l~LLs 649 (1162)
.-+.+.
T Consensus 93 ~~~al~ 98 (356)
T PLN03088 93 LEKGAS 98 (356)
T ss_pred HHHHHH
Confidence 544443
No 47
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=58.09 E-value=16 Score=31.87 Aligned_cols=57 Identities=23% Similarity=0.223 Sum_probs=37.6
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhh
Q 001079 549 SLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYS 612 (1162)
Q Consensus 549 ALsS~e~F~~~Yl~Lt~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~ 612 (1162)
++-..++|... ++..+.++...-. ...+..+.|.+|++.|+|++|...|..++..-.
T Consensus 4 ~~~~~~~~~~A-~~~~~~~l~~~p~------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 4 IYLQQEDYEEA-LEVLERALELDPD------DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHhCCCHHHH-HHHHHHHHHhCcc------cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 33444444433 3344444443222 235578899999999999999999999986443
No 48
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=55.93 E-value=19 Score=31.09 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcC-CcchhHHhhHHHHHHHHhcC-CHHHHHHHHHHHHhh
Q 001079 563 LTKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHG-NYDQAAKSYEKVCAL 610 (1162)
Q Consensus 563 Lt~~Ai~~Yk~a~-R~Rsa~~L~~dLA~lyy~~g-dy~kA~~~f~~~~~~ 610 (1162)
-.+.|+..|+.+= ....-..+...||..|+.+| +|.+|...|..++..
T Consensus 18 ~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 18 DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3455566666652 22333457899999999999 799999999998753
No 49
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=55.74 E-value=1e+02 Score=34.41 Aligned_cols=55 Identities=11% Similarity=0.030 Sum_probs=43.0
Q ss_pred chhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhc
Q 001079 578 RHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILN 635 (1162)
Q Consensus 578 Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~ 635 (1162)
..+......||..||+.|||..|...|...+..|.++.=. -.++-+.+-|+..++
T Consensus 66 ~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~---~~a~Y~~g~~~~~~~ 120 (243)
T PRK10866 66 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI---DYVLYMRGLTNMALD 120 (243)
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch---HHHHHHHHHhhhhcc
Confidence 4455567899999999999999999999999999988633 455556666765554
No 50
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=55.43 E-value=68 Score=32.41 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=50.0
Q ss_pred CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHH
Q 001079 576 WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLS 643 (1162)
Q Consensus 576 R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~ 643 (1162)
....+......+|..++..|+|++|...|..+.....+..+. .-...++++|+...++.++=+..
T Consensus 43 ~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~---~~a~l~LA~~~~~~~~~d~Al~~ 107 (145)
T PF09976_consen 43 SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELK---PLARLRLARILLQQGQYDEALAT 107 (145)
T ss_pred CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHH---HHHHHHHHHHHHHcCCHHHHHHH
Confidence 444566778889999999999999999999999977655554 34455788888888877664444
No 51
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=54.24 E-value=52 Score=30.93 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=46.6
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
-.+.|..++..|+|++|..+|..+...+...... ...+..++.|+.+.++.++=+...-+++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYA---PNAHYWLGEAYYAQGKYADAAKAFLAVVK 67 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc---HHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4678999999999999999999999877654332 35566788888888887655554444443
No 52
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=52.75 E-value=1.5e+02 Score=30.08 Aligned_cols=80 Identities=11% Similarity=0.091 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCcc-hhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHH
Q 001079 565 KGAANNYHCSWWKR-HGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLS 643 (1162)
Q Consensus 565 ~~Ai~~Yk~a~R~R-sa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~ 643 (1162)
+.|+..|..+-+.. .-......+|..+...|+|+.|...|..++.. .-++ ...+..++.|+..+|+.++=+..
T Consensus 41 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~----~~a~~~lg~~l~~~g~~~eAi~~ 114 (144)
T PRK15359 41 SRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASH----PEPVYQTGVCLKMMGEPGLAREA 114 (144)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCC----cHHHHHHHHHHHHcCCHHHHHHH
Confidence 45677777653111 11234678999999999999999999999974 3333 35566788899999999887776
Q ss_pred HHHHhcc
Q 001079 644 CVRLLSL 650 (1162)
Q Consensus 644 ~l~LLs~ 650 (1162)
.-+.+..
T Consensus 115 ~~~Al~~ 121 (144)
T PRK15359 115 FQTAIKM 121 (144)
T ss_pred HHHHHHh
Confidence 6665543
No 53
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=51.92 E-value=24 Score=28.19 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=28.2
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCC
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEG 615 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~eg 615 (1162)
-..+|..|.++|++++|...|..++...-++-
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 45789999999999999999999999876653
No 54
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=49.46 E-value=72 Score=39.68 Aligned_cols=87 Identities=18% Similarity=0.075 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhcC-CcchhH-HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchH-HHHHHHHHHHHHHHhccch
Q 001079 562 ELTKGAANNYHCSW-WKRHGV-VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDL-LAEVLPNLAECQKILNDEA 638 (1162)
Q Consensus 562 ~Lt~~Ai~~Yk~a~-R~Rsa~-~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L-~~~~L~~~a~Clk~L~~~~ 638 (1162)
++.++|+......+ +.+.-. ..-.+||..|++++.|+.|..+|.....-+..-|=... ...++..++.-+..+|+.+
T Consensus 388 ~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e 467 (508)
T KOG1840|consen 388 ELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYE 467 (508)
T ss_pred HHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHH
Confidence 37778877776665 444443 44899999999999999999999987765555553332 2467788889999999999
Q ss_pred hHHHHHHHHh
Q 001079 639 GYLLSCVRLL 648 (1162)
Q Consensus 639 dYv~~~l~LL 648 (1162)
++++..-.++
T Consensus 468 ~a~~~~~~~~ 477 (508)
T KOG1840|consen 468 AAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHH
Confidence 9998876666
No 55
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=49.21 E-value=60 Score=35.69 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=32.1
Q ss_pred HHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCC
Q 001079 581 VVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEG 615 (1162)
Q Consensus 581 ~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~eg 615 (1162)
..++.=+|+++++.|+|++|..+|..+......+.
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 35788999999999999999999999999988877
No 56
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=48.91 E-value=1.7e+02 Score=35.78 Aligned_cols=115 Identities=21% Similarity=0.109 Sum_probs=80.0
Q ss_pred hHHHHhhcCHHHHHHHHHH--HHHHHHHHHHhc---CCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcch
Q 001079 544 PNLLKSLSSVEEFEQKYLE--LTKGAANNYHCS---WWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQD 618 (1162)
Q Consensus 544 ~~L~~ALsS~e~F~~~Yl~--Lt~~Ai~~Yk~a---~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~ 618 (1162)
+.+..||. +-|+. -.+.||..|+.+ |-.-. ..-..||.+|=+.+|+++|+.+|...+..+..+|=..
T Consensus 432 sRlw~aLG------~CY~kl~~~~eAiKCykrai~~~dte~--~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~ 503 (559)
T KOG1155|consen 432 SRLWVALG------ECYEKLNRLEEAIKCYKRAILLGDTEG--SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEID 503 (559)
T ss_pred hHHHHHHH------HHHHHhccHHHHHHHHHHHHhccccch--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc
Confidence 56666764 34554 467889999885 32222 3468999999999999999999999999998777665
Q ss_pred HH-HHHHHHHHHHHHHhccchhHHHHHHHHhccCCCCCCHHHHHHHHHHHHH
Q 001079 619 LL-AEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQAFQSEVIS 669 (1162)
Q Consensus 619 L~-~~~L~~~a~Clk~L~~~~dYv~~~l~LLs~~~~~~s~~eR~~y~~ell~ 669 (1162)
-+ ......+|+-.+++++.++--.+|...++ +...-++......++.+
T Consensus 504 ~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~---~~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 504 DETIKARLFLAEYFKKMKDFDEASYYATLVLK---GETECEEAKALLREIRK 552 (559)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc---CCchHHHHHHHHHHHHH
Confidence 53 34555688888888888766666665554 32333445566666554
No 57
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=48.76 E-value=1.4e+02 Score=31.09 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCCc-c-h--hHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccc
Q 001079 564 TKGAANNYHCSWWK-R-H--GVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDE 637 (1162)
Q Consensus 564 t~~Ai~~Yk~a~R~-R-s--a~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~ 637 (1162)
.+.|+..|+++-.. + . ...+...+|..|+++|+|++|..+|..++...... ...+..++.|+..+++.
T Consensus 51 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 51 YAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ------PSALNNIAVIYHKRGEK 122 (172)
T ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCCh
Confidence 45667777665311 1 1 12456778888888888888888888877765432 22234556666666553
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=48.74 E-value=80 Score=32.83 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=12.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 001079 585 GEIAAVCFKHGNYDQAAKSYEKVCA 609 (1162)
Q Consensus 585 ~dLA~lyy~~gdy~kA~~~f~~~~~ 609 (1162)
..+|..|+..|+|++|..+|..+..
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 3444445555555555555554443
No 59
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=48.63 E-value=82 Score=31.14 Aligned_cols=66 Identities=23% Similarity=0.218 Sum_probs=47.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhhhcCC--cchH--HHHHHHHHHHHHHHhccchhHHHHHHHHhccC
Q 001079 586 EIAAVCFKHGNYDQAAKSYEKVCALYSGEG--WQDL--LAEVLPNLAECQKILNDEAGYLLSCVRLLSLD 651 (1162)
Q Consensus 586 dLA~lyy~~gdy~kA~~~f~~~~~~Y~~eg--W~~L--~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs~~ 651 (1162)
+.|.-+|.+||+-||+.+..+++...+++. |-.- .+.|...++.=...-.-...|+..+++..+.+
T Consensus 1 e~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a 70 (111)
T PF04781_consen 1 EKAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRA 70 (111)
T ss_pred ChHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHH
Confidence 357889999999999999999999999988 6222 25666666554333333456888887766544
No 60
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=47.84 E-value=82 Score=33.51 Aligned_cols=82 Identities=15% Similarity=0.204 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccc---hhHH
Q 001079 565 KGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDE---AGYL 641 (1162)
Q Consensus 565 ~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~---~dYv 641 (1162)
+.-+..|+.-.-.-+.+..+-++|.+|++.||+++|+..|..+..+....|=. .+|....++..-.+++. ..|+
T Consensus 20 e~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~---id~~l~~irv~i~~~d~~~v~~~i 96 (177)
T PF10602_consen 20 EAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHK---IDMCLNVIRVAIFFGDWSHVEKYI 96 (177)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHH---HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34445566544345556778999999999999999999999977765443311 22333333333334443 5566
Q ss_pred HHHHHHhc
Q 001079 642 LSCVRLLS 649 (1162)
Q Consensus 642 ~~~l~LLs 649 (1162)
.-+-.++.
T Consensus 97 ~ka~~~~~ 104 (177)
T PF10602_consen 97 EKAESLIE 104 (177)
T ss_pred HHHHHHHh
Confidence 66654553
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=47.36 E-value=81 Score=32.80 Aligned_cols=52 Identities=17% Similarity=0.193 Sum_probs=37.2
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchh
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 639 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~d 639 (1162)
.....+|..|+..|+|++|..+|..++....... ..+..++.|+...++.++
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~~~~~~~~~g~~~~ 117 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNG------DVLNNYGTFLCQQGKYEQ 117 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcccHHH
Confidence 3466799999999999999999999998765543 234445555555555443
No 62
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=44.05 E-value=72 Score=33.22 Aligned_cols=58 Identities=16% Similarity=0.088 Sum_probs=43.0
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHH
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLS 643 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~ 643 (1162)
....+|..|+..|+|++|..+|..++.......|. ...+..++.|+.++++.++-+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~ 94 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDR---SYILYNMGIIYASNGEHDKALEY 94 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchH---HHHHHHHHHHHHHcCCHHHHHHH
Confidence 35788999999999999999999998765544432 34566778888887777554433
No 63
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=43.00 E-value=40 Score=26.38 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 001079 586 EIAAVCFKHGNYDQAAKSYE 605 (1162)
Q Consensus 586 dLA~lyy~~gdy~kA~~~f~ 605 (1162)
-+|..++..|+|++|..+|+
T Consensus 6 ~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 46889999999999999976
No 64
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=41.01 E-value=1.1e+02 Score=29.75 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=39.3
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchh
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 639 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~d 639 (1162)
.....+|..++..|+|++|...|..+....... ..+...++.|+.++++.++
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~~~~ 69 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN------SRYWLGLAACCQMLKEYEE 69 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHHHHH
Confidence 447899999999999999999999998865432 3445566777776666544
No 65
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=40.31 E-value=85 Score=34.04 Aligned_cols=67 Identities=10% Similarity=-0.014 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcC-C---cchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHH
Q 001079 564 TKGAANNYHCSW-W---KRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKI 633 (1162)
Q Consensus 564 t~~Ai~~Yk~a~-R---~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~ 633 (1162)
.+.|+..|..+- . ..........+|..|+..|+|++|..+|..++..+.+ ++..- ..+-+...|+.+
T Consensus 49 ~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~--~a~~~~g~~~~~ 119 (235)
T TIGR03302 49 YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDAD--YAYYLRGLSNYN 119 (235)
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchH--HHHHHHHHHHHH
Confidence 445666665542 1 1223345677888888888888888888888887764 33221 234455556544
No 66
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=39.75 E-value=1.1e+02 Score=28.86 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=46.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhhhhcCCcch---HHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 590 VCFKHGNYDQAAKSYEKVCALYSGEGWQD---LLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 590 lyy~~gdy~kA~~~f~~~~~~Y~~egW~~---L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
...+.|||..|...+.....+...++|.. -....+..++..+..+|..++=+...-+.+.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34689999999999999999999999876 3344566678888888888766655554443
No 67
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=39.39 E-value=38 Score=27.81 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=23.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 001079 585 GEIAAVCFKHGNYDQAAKSYEKVCA 609 (1162)
Q Consensus 585 ~dLA~lyy~~gdy~kA~~~f~~~~~ 609 (1162)
.+||.-|+..||++.|-.++..++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5899999999999999999999985
No 68
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=36.78 E-value=70 Score=38.18 Aligned_cols=67 Identities=30% Similarity=0.392 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcc---------hHHHHHHHHHHHHHHHhccchhHHHHHHHHhccC
Q 001079 585 GEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQ---------DLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLD 651 (1162)
Q Consensus 585 ~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~---------~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs~~ 651 (1162)
.+=|..||++|+|..|..-|..+..+...+.=. .+-...+..++-|+-||++...-+..|.+.|...
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 355788999999999999999988876633322 2334567788999999999999999999988654
No 69
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=36.72 E-value=1.1e+02 Score=30.91 Aligned_cols=51 Identities=18% Similarity=0.311 Sum_probs=38.9
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchh
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 639 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~d 639 (1162)
.+...||.+++..|+|++|...|..+ ..+.|..+ ......+++...|+.++
T Consensus 86 ~a~l~LA~~~~~~~~~d~Al~~L~~~----~~~~~~~~---~~~~~Gdi~~~~g~~~~ 136 (145)
T PF09976_consen 86 LARLRLARILLQQGQYDEALATLQQI----PDEAFKAL---AAELLGDIYLAQGDYDE 136 (145)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhc----cCcchHHH---HHHHHHHHHHHCCCHHH
Confidence 45778999999999999999999663 35667644 55567778877777654
No 70
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=36.34 E-value=46 Score=28.42 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=22.8
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCAL 610 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~ 610 (1162)
..-||.=||+.|||.+|..+...++..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 467899999999999999999988863
No 71
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=35.09 E-value=77 Score=38.62 Aligned_cols=50 Identities=12% Similarity=-0.019 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhcC----CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 001079 562 ELTKGAANNYHCSW----WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALY 611 (1162)
Q Consensus 562 ~Lt~~Ai~~Yk~a~----R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y 611 (1162)
.-.+.|+..|..+= ..-.+......+|+.|.++|++++|...|..++..|
T Consensus 89 GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 89 GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 35677888887752 222223457899999999999999999999998863
No 72
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=34.98 E-value=93 Score=40.51 Aligned_cols=87 Identities=11% Similarity=0.134 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcC-CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhh----hhcCCcchHHHHHHHHHHHHHHHhccc
Q 001079 563 LTKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCAL----YSGEGWQDLLAEVLPNLAECQKILNDE 637 (1162)
Q Consensus 563 Lt~~Ai~~Yk~a~-R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~----Y~~egW~~L~~~~L~~~a~Clk~L~~~ 637 (1162)
-.+.|+..|.++= =.-...-+-.-||.+|.++|+.++|+..+..+... -..++|+ .+.-|+-..+.-+...++.
T Consensus 464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~-~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE-PERRILAHRCDILFQVGKR 542 (895)
T ss_pred hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc-HHHHHHHHHHHHHHHhhhH
Confidence 4667777777752 11222233577999999999999999999987621 2456687 3456665565556789999
Q ss_pred hhHHHHHHHHhcc
Q 001079 638 AGYLLSCVRLLSL 650 (1162)
Q Consensus 638 ~dYv~~~l~LLs~ 650 (1162)
++||.+..+|+..
T Consensus 543 E~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 543 EEFINTASTLVDD 555 (895)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988863
No 73
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=34.48 E-value=63 Score=29.29 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=20.7
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHH
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKV 607 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~ 607 (1162)
....-+|..++.+|+|++|...|..+
T Consensus 59 ~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 59 DIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 44566799999999999999998753
No 74
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=34.30 E-value=1.8e+02 Score=34.04 Aligned_cols=59 Identities=19% Similarity=0.104 Sum_probs=30.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLL 648 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LL 648 (1162)
...||..|++.|+|++|..+|..+..... -....+..++.++.+.++.++-+...-+++
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEGD------FAEGALQQLLEIYQQEKDWQKAIDVAERLE 168 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCc------chHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 45556666666666666666666654311 112334445555555555554444443333
No 75
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=34.16 E-value=48 Score=23.97 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHH
Q 001079 221 ESLAFMFEMAHLHEDALREYDELELCY 247 (1162)
Q Consensus 221 E~LA~~fe~~gL~edAL~~YdEL~~~f 247 (1162)
-.+|.+|...|.+++|...|+++-..|
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 468999999999999999999987654
No 76
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=33.72 E-value=61 Score=23.07 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=19.9
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHH
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYE 605 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~ 605 (1162)
....+|..|+.+||++.|...+.
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 35678999999999999998874
No 77
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.46 E-value=2.7e+02 Score=31.56 Aligned_cols=84 Identities=17% Similarity=0.224 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhH
Q 001079 561 LELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGY 640 (1162)
Q Consensus 561 l~Lt~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dY 640 (1162)
..|.++|...|..+|+--.|.. ..+=|.=-..-.+++.|+.+|++.+.-..+++-...+... +..|.+-|-+...|
T Consensus 91 vdl~eKAs~lY~E~GspdtAAm-aleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el---~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAM-ALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL---YGKCSRVLVRLEKF 166 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHH-HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH---HHHhhhHhhhhHHh
Confidence 4577889999999997766553 3444555567889999999999999999998887666554 45566666666667
Q ss_pred HHHHHHHh
Q 001079 641 LLSCVRLL 648 (1162)
Q Consensus 641 v~~~l~LL 648 (1162)
.+.++.++
T Consensus 167 ~Eaa~a~l 174 (308)
T KOG1585|consen 167 TEAATAFL 174 (308)
T ss_pred hHHHHHHH
Confidence 66666555
No 78
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=32.82 E-value=1.9e+02 Score=33.66 Aligned_cols=59 Identities=19% Similarity=0.080 Sum_probs=37.9
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLL 648 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LL 648 (1162)
...+|..++..|++++|..+|..+....... ......+++++.+.++.++=+...-+++
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~ 241 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQC------VRASILLGDLALAQGDYAAAIEALERVE 241 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3467777788888888888888887764331 2234456677777777665555444444
No 79
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=32.74 E-value=82 Score=35.38 Aligned_cols=72 Identities=18% Similarity=0.097 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHH
Q 001079 564 TKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLS 643 (1162)
Q Consensus 564 t~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~ 643 (1162)
...+++.|........ .+...+|..|+.+|+|++|+.+|..++..... . ..++..|++++...|+.++=+.+
T Consensus 199 ~~~~l~~~~~~~~~~~--~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d-----~~~~~~~a~~l~~~g~~~~A~~~ 270 (280)
T PF13429_consen 199 AREALKRLLKAAPDDP--DLWDALAAAYLQLGRYEEALEYLEKALKLNPD-D-----PLWLLAYADALEQAGRKDEALRL 270 (280)
T ss_dssp HHHHHHHHHHH-HTSC--CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-------HHHHHHHHHHHT-----------
T ss_pred HHHHHHHHHHHCcCHH--HHHHHHHHHhcccccccccccccccccccccc-c-----ccccccccccccccccccccccc
Confidence 3444555555542222 35678999999999999999999998864332 2 34566899999888887664443
No 80
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=32.29 E-value=1.4e+02 Score=30.87 Aligned_cols=67 Identities=15% Similarity=0.011 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCc--chh--HHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhcc
Q 001079 564 TKGAANNYHCSWWK--RHG--VVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILND 636 (1162)
Q Consensus 564 t~~Ai~~Yk~a~R~--Rsa--~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~ 636 (1162)
.+.|+..|..+-.. .+. ..+...||.+|.++|+++.|..+|..++......+ ..+..++.++..+++
T Consensus 51 ~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~------~~~~~la~i~~~~~~ 121 (168)
T CHL00033 51 YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP------QALNNMAVICHYRGE 121 (168)
T ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH------HHHHHHHHHHHHhhH
Confidence 35666777766311 111 12467788888888888888888888886633332 234455666655554
No 81
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=32.26 E-value=1.7e+02 Score=37.21 Aligned_cols=73 Identities=11% Similarity=0.089 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcC-CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHH
Q 001079 564 TKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1162)
Q Consensus 564 t~~Ai~~Yk~a~-R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~ 642 (1162)
.+.|+..|.++- ....-......+|..|+++|+|+.|..+|..++..+.... .++..++.++..+++.++=+.
T Consensus 415 ~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~------~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 415 FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAP------DVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHccCHHHHHH
Confidence 456666666653 1112223466889999999999999999999988765542 234455666666666544333
No 82
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=32.23 E-value=5.2e+02 Score=29.41 Aligned_cols=97 Identities=11% Similarity=0.082 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcC-CcchhHHhhHHHHHHHHh-cCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHH
Q 001079 564 TKGAANNYHCSW-WKRHGVVLDGEIAAVCFK-HGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYL 641 (1162)
Q Consensus 564 t~~Ai~~Yk~a~-R~Rsa~~L~~dLA~lyy~-~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv 641 (1162)
.+.|=.-|+.|. +.+....+-+..|.+.|+ .+|.+.|..+|...+..|..+. .....|++.+.++++. +-+
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~------~~~~~Y~~~l~~~~d~-~~a 89 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP------DFWLEYLDFLIKLNDI-NNA 89 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H------HHHHHHHHHHHHTT-H-HHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHhCcH-HHH
Confidence 344444566653 344445667788998666 7888889999999999998863 5555788888887754 455
Q ss_pred HHHHHHhccCCCCCCHHH-HHHHHHHHHHH
Q 001079 642 LSCVRLLSLDKGLFSTKE-RQAFQSEVISL 670 (1162)
Q Consensus 642 ~~~l~LLs~~~~~~s~~e-R~~y~~ell~~ 670 (1162)
+...+-.- .. +..+. ...+|+.+++.
T Consensus 90 R~lfer~i--~~-l~~~~~~~~iw~~~i~f 116 (280)
T PF05843_consen 90 RALFERAI--SS-LPKEKQSKKIWKKFIEF 116 (280)
T ss_dssp HHHHHHHC--CT-SSCHHHCHHHHHHHHHH
T ss_pred HHHHHHHH--Hh-cCchhHHHHHHHHHHHH
Confidence 55544221 11 32333 45667766643
No 83
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=31.81 E-value=1.7e+02 Score=33.20 Aligned_cols=78 Identities=21% Similarity=0.181 Sum_probs=56.1
Q ss_pred HhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhcc--chhHHHHHHHHhccCCCCCCHHHHHHHHHHHHH
Q 001079 592 FKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILND--EAGYLLSCVRLLSLDKGLFSTKERQAFQSEVIS 669 (1162)
Q Consensus 592 y~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~--~~dYv~~~l~LLs~~~~~~s~~eR~~y~~ell~ 669 (1162)
+.+++|+.|..++.+-+..+.+.|=..-++++-..+++++.+-+. .++.+.-..++++... .++.+|..+.+..++
T Consensus 1 v~~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~--~~~p~r~~fi~~ai~ 78 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFP--PEEPERKKFIKAAIK 78 (260)
T ss_dssp HHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS---TT-TTHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC--CCcchHHHHHHHHHH
Confidence 357899999999999999888888777888999999999987443 3556666666665432 233358888888887
Q ss_pred HH
Q 001079 670 LA 671 (1162)
Q Consensus 670 ~a 671 (1162)
-+
T Consensus 79 WS 80 (260)
T PF04190_consen 79 WS 80 (260)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 84
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.07 E-value=1.2e+02 Score=37.12 Aligned_cols=59 Identities=25% Similarity=0.394 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 585 GEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 585 ~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
...|.=+|+.|+|+.|..||+.++...-.| ...-...+-|+..+++++.=++-|.+.|.
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~e------piFYsNraAcY~~lgd~~~Vied~TkALE 177 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDE------PIFYSNRAACYESLGDWEKVIEDCTKALE 177 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCC------chhhhhHHHHHHHHhhHHHHHHHHHHHhh
Confidence 345666899999999999999999887776 23334556677777777776666666554
No 85
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=30.33 E-value=1.4e+02 Score=34.84 Aligned_cols=101 Identities=21% Similarity=0.231 Sum_probs=67.3
Q ss_pred hhccCCCchHHHHhhcCHHHHHHHHHHHHHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHh------
Q 001079 536 ALRQTISNPNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCA------ 609 (1162)
Q Consensus 536 ~~~~~i~~~~L~~ALsS~e~F~~~Yl~Lt~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~------ 609 (1162)
+.++-..+|.+.+++++..+=......|.+ ++|=.--..-.....|.|.|..|+|+.|..|+...-.
T Consensus 91 piv~~le~Pd~~~~~~~~k~~~~~l~~L~e-------~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d 163 (432)
T KOG2758|consen 91 PIVKVLENPDLIAALRSDKDRVQNLQHLQE-------HYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPD 163 (432)
T ss_pred HHHHHHcCHHHHHHHHhhhhHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcc
Confidence 444456789999999877663333222322 2331111123378899999999999999998877654
Q ss_pred -hhhcCCcchHHHHHHHHHHHHH-HHhccchhHHHH
Q 001079 610 -LYSGEGWQDLLAEVLPNLAECQ-KILNDEAGYLLS 643 (1162)
Q Consensus 610 -~Y~~egW~~L~~~~L~~~a~Cl-k~L~~~~dYv~~ 643 (1162)
-|.+.=|.-|.+.||..=-+-+ ..|++..+||..
T Consensus 164 ~n~lsalwGKlASEIL~qnWd~A~edL~rLre~IDs 199 (432)
T KOG2758|consen 164 RNYLSALWGKLASEILTQNWDGALEDLTRLREYIDS 199 (432)
T ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcc
Confidence 3677779999999887655543 357777777754
No 86
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=30.00 E-value=1.2e+02 Score=38.60 Aligned_cols=70 Identities=16% Similarity=0.060 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchh
Q 001079 564 TKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 639 (1162)
Q Consensus 564 t~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~d 639 (1162)
.++|+..|.++=+..--......+|..|+.+|+|++|...+..++..-... ...+...+.|+..+++.++
T Consensus 143 ~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~------~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 143 FNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDY------SKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHH
Confidence 455666666654333334556667777777777777777777777653221 2445566677777776544
No 87
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=29.34 E-value=62 Score=24.75 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHH
Q 001079 221 ESLAFMFEMAHLHEDALREYDELEL 245 (1162)
Q Consensus 221 E~LA~~fe~~gL~edAL~~YdEL~~ 245 (1162)
..||.+|..+|-+++|...|.+.-+
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3699999999999999999998443
No 88
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=29.15 E-value=1.4e+02 Score=38.25 Aligned_cols=45 Identities=18% Similarity=0.145 Sum_probs=20.8
Q ss_pred HHHHHHHHhcC-CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001079 565 KGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCAL 610 (1162)
Q Consensus 565 ~~Ai~~Yk~a~-R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~ 610 (1162)
++|+..|..+- ..-.-..+...+|..|...|+ .+|..++..++..
T Consensus 787 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 787 DKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 44555555432 111112234445555555555 5555555555543
No 89
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=28.79 E-value=1.8e+02 Score=37.45 Aligned_cols=59 Identities=12% Similarity=0.042 Sum_probs=40.8
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLL 648 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LL 648 (1162)
....+|..|+..|+|++|..+|..++...... .++..++.|+.++++.++-+...-+++
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~l 763 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-------QNAIKLHRALLASGNTAEAVKTLEAWL 763 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-------hHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34567888889999999999998888765443 344556777777777665555444444
No 90
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=28.14 E-value=2.4e+02 Score=29.04 Aligned_cols=55 Identities=13% Similarity=0.019 Sum_probs=37.1
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhH
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGY 640 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dY 640 (1162)
....+|..+..+|+|+.|...|..++....... ....++..++.|+.++++.++-
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~---~~~~~~~~lg~~~~~~g~~~eA 91 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY---DRSYILYNIGLIHTSNGEHTKA 91 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHHcCCHHHH
Confidence 356678888889999999999999987643321 1234556666676666666443
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=28.12 E-value=2.1e+02 Score=33.00 Aligned_cols=61 Identities=15% Similarity=-0.033 Sum_probs=40.0
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHH
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSC 644 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~ 644 (1162)
.+...+|..|+.+|++++|..+|...+..+... ..+.......++.|+...|+.++=+...
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~--~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS--SMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC--cchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 456778889999999999999998888766531 1122233445666776666665544443
No 92
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=27.13 E-value=2.4e+02 Score=34.82 Aligned_cols=70 Identities=14% Similarity=0.158 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcC----Ccchh-HHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccc
Q 001079 563 LTKGAANNYHCSW----WKRHG-VVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDE 637 (1162)
Q Consensus 563 Lt~~Ai~~Yk~a~----R~Rsa-~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~ 637 (1162)
-.+.|++.|..+. -+|.. ..+..|+|-.|+.+.||++|+.+|..+.. +++|+.-...- +.+-|+-.+++.
T Consensus 282 ~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~---~s~WSka~Y~Y--~~a~c~~~l~~~ 356 (468)
T PF10300_consen 282 NLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK---ESKWSKAFYAY--LAAACLLMLGRE 356 (468)
T ss_pred CHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh---ccccHHHHHHH--HHHHHHHhhccc
Confidence 5678888888653 22333 35599999999999999999999999887 88997422221 234466666665
No 93
>PF03504 Chlam_OMP6: Chlamydia cysteine-rich outer membrane protein 6; InterPro: IPR003506 Three cysteine-rich proteins (also believed to be lipoproteins) make up the extracellular matrix of the Chlamydial outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. As these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism. The largest of these is the major outer membrane protein (MOMP), and constitutes around 60% of the total protein for the membrane []. OMP6 is the second largest, with a molecular mass of 58kDa, while the OMP3 protein is ~15kDa []. MOMP is believed to elicit the strongest immune response, and has recently been linked to heart disease through its sequence similarity to a murine heart-muscle specific alpha myosin []. The OMP6 family plays a structural role in the outer membrane during the EB stage of the Chlamydial cell, and different biovars show a small, yet highly significant, change at peptide charge level []. Members of this family include Chlamydia trachomatis, Chlamydia pneumoniae and Chlamydia psittaci.; GO: 0005201 extracellular matrix structural constituent
Probab=26.95 E-value=3.3e+02 Score=25.54 Aligned_cols=46 Identities=9% Similarity=0.028 Sum_probs=30.1
Q ss_pred cCCCccceeecccCCcccCceEEEEEEEEcCcccccceEEEEecCCC
Q 001079 813 NPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSLKGAILQIDTGPG 859 (1162)
Q Consensus 813 ~~~~~~~L~a~~~~P~L~g~~q~v~l~v~sg~~~i~~~~L~l~~~~g 859 (1162)
..+.++.+.+....-+-+|-+|+|+|.+....+- =++.++-.+.-+
T Consensus 11 ndd~nveitq~vP~yatvGspYPiEi~a~gk~Dc-vnVviTqqLPce 56 (95)
T PF03504_consen 11 NDDCNVEITQRVPKYATVGSPYPIEILAQGKKDC-VNVVITQQLPCE 56 (95)
T ss_pred cCCcceEEeecCcceeecCCCCCEEEEEEcccce-eEEEEeecCCcc
Confidence 4445566666666678899999999999887654 344444333333
No 94
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=26.55 E-value=5e+02 Score=24.13 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=16.9
Q ss_pred ecCceEeeCCCeEE-EEEcCCCC--CeeEEEE
Q 001079 743 TSTATVLKPGRNTI-TVDLPPQK--PGSYVLG 771 (1162)
Q Consensus 743 s~~~~~LkPG~Nki-~l~~~~~~--~G~y~l~ 771 (1162)
.....+|.||.... ....+... +|.|.+.
T Consensus 50 al~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~ 81 (82)
T PF12690_consen 50 ALQEETLEPGESLTYEETWDLKDLSPGEYTLE 81 (82)
T ss_dssp --EEEEE-TT-EEEEEEEESS----SEEEEEE
T ss_pred eeeEEEECCCCEEEEEEEECCCCCCCceEEEe
Confidence 44578899999874 44555555 9999864
No 95
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=25.46 E-value=1.7e+02 Score=38.28 Aligned_cols=52 Identities=25% Similarity=0.298 Sum_probs=39.2
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchh
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 639 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~d 639 (1162)
+-.|+|..|...|.|..|..||..++... +|.. ..+-...++|++.++..+.
T Consensus 416 L~~d~a~al~~~~~~~~Al~~l~~i~~~~---~~~~--~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 416 LYLDLADALTNIGKYKEALRLLSPITNRE---GYQN--AFVWYKLARCYMELGEYEE 467 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhcCc---cccc--hhhhHHHHHHHHHHhhHHH
Confidence 35688899999999999999999888754 4443 4444567889888887754
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=24.79 E-value=1.8e+02 Score=33.46 Aligned_cols=53 Identities=21% Similarity=0.272 Sum_probs=40.0
Q ss_pred HHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchh
Q 001079 581 VVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 639 (1162)
Q Consensus 581 ~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~d 639 (1162)
..+..-+|..++++|+|+.|...+..++. ..-. ...+|..++-|..++|+..+
T Consensus 201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~---~~~~---~~d~LaNliv~~~~~gk~~~ 253 (290)
T PF04733_consen 201 PKLLNGLAVCHLQLGHYEEAEELLEEALE---KDPN---DPDTLANLIVCSLHLGKPTE 253 (290)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHCC---C-CC---HHHHHHHHHHHHHHTT-TCH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---hccC---CHHHHHHHHHHHHHhCCChh
Confidence 45677899999999999999999999764 2222 36788899999999998843
No 97
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=24.64 E-value=2.3e+02 Score=36.00 Aligned_cols=78 Identities=19% Similarity=0.139 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHH----------hhhhcCCcchHHH
Q 001079 553 VEEFEQKYLELTKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVC----------ALYSGEGWQDLLA 621 (1162)
Q Consensus 553 ~e~F~~~Yl~Lt~~Ai~~Yk~a~-R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~----------~~Y~~egW~~L~~ 621 (1162)
.+..+..+..-+..|+..|.+.- .+.-.-.+..++|..||.++||.+|..+|..+- +.|..-=|++=..
T Consensus 324 ~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~ 403 (638)
T KOG1126|consen 324 GEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE 403 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh
Confidence 34455556667888888888843 222222778999999999999999999999875 3566666776666
Q ss_pred HHHHHHHHH
Q 001079 622 EVLPNLAEC 630 (1162)
Q Consensus 622 ~~L~~~a~C 630 (1162)
.-|.++++=
T Consensus 404 v~Ls~Laq~ 412 (638)
T KOG1126|consen 404 VALSYLAQD 412 (638)
T ss_pred HHHHHHHHH
Confidence 666666543
No 98
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.50 E-value=1.4e+02 Score=33.59 Aligned_cols=66 Identities=21% Similarity=0.343 Sum_probs=48.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh---------hhhcCCcchHH---HHHHHHHHHHHHHhccchhHHHHHHHHhccC
Q 001079 586 EIAAVCFKHGNYDQAAKSYEKVCA---------LYSGEGWQDLL---AEVLPNLAECQKILNDEAGYLLSCVRLLSLD 651 (1162)
Q Consensus 586 dLA~lyy~~gdy~kA~~~f~~~~~---------~Y~~egW~~L~---~~~L~~~a~Clk~L~~~~dYv~~~l~LLs~~ 651 (1162)
+=|+-.|..|+|..|.+-|..++- --++.-|-.|. +-+|..|+.|+-+.++--+-+..|.++|..+
T Consensus 183 q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 183 QEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH 260 (329)
T ss_pred HhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 445666889999999887777663 24566788877 4578888888876666667788888888654
No 99
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.30 E-value=3.1e+02 Score=31.05 Aligned_cols=89 Identities=18% Similarity=0.157 Sum_probs=67.9
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHH
Q 001079 547 LKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPN 626 (1162)
Q Consensus 547 ~~ALsS~e~F~~~Yl~Lt~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~ 626 (1162)
-.|+++.+.|.+.=- -+.+|+..|-.-.-.=+|....-+.|.+--....+.+|+.||..+...|.+.|-..-....|..
T Consensus 38 AvafRnAk~feKakd-cLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKD-CLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHHHHhhccHHHHHH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHH
Confidence 347777888887765 4445555555543334555667777888888899999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 001079 627 LAECQKILND 636 (1162)
Q Consensus 627 ~a~Clk~L~~ 636 (1162)
.++-++.-+-
T Consensus 117 Aak~lenv~P 126 (308)
T KOG1585|consen 117 AAKALENVKP 126 (308)
T ss_pred HHHHhhcCCH
Confidence 9988765443
No 100
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=23.62 E-value=1.4e+02 Score=27.42 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=25.4
Q ss_pred HhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHH
Q 001079 592 FKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNL 627 (1162)
Q Consensus 592 y~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~ 627 (1162)
=..|+|++|..+|.+++.+|..+.=...--.++..+
T Consensus 17 D~~gny~eA~~lY~~ale~~~~ekn~~~k~~i~~K~ 52 (75)
T cd02680 17 DEKGNAEEAIELYTEAVELCINTSNETMDQALQTKL 52 (75)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHhcChhhHHHHHHHH
Confidence 467899999999999999998865333333343444
No 101
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=22.28 E-value=1e+02 Score=25.34 Aligned_cols=26 Identities=23% Similarity=0.001 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHH
Q 001079 220 KESLAFMFEMAHLHEDALREYDELEL 245 (1162)
Q Consensus 220 KE~LA~~fe~~gL~edAL~~YdEL~~ 245 (1162)
|-.||+.|-.||-+|.|-...+|+-.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 56899999999999999998888764
No 102
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.59 E-value=3.6e+02 Score=30.94 Aligned_cols=53 Identities=23% Similarity=0.241 Sum_probs=45.0
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhH
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGY 640 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dY 640 (1162)
.+.--+|+.+.++|+|+.|.+++..++..+... -.+|..+.-|..++|...+-
T Consensus 208 ~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d------petL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 208 LLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD------PETLANLIVLALHLGKDAEV 260 (299)
T ss_pred HHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC------HHHHHHHHHHHHHhCCChHH
Confidence 556678999999999999999999999877666 67888999999999988443
No 103
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=21.51 E-value=3.1e+02 Score=27.38 Aligned_cols=48 Identities=17% Similarity=0.213 Sum_probs=24.2
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccc
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDE 637 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~ 637 (1162)
...+|..+...|+|++|..++..++..+--+ -.+-..+.+|+..+|+.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~------E~~~~~lm~~~~~~g~~ 112 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYD------EEAYRLLMRALAAQGRR 112 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-------HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHCcCH
Confidence 3445555566666777777766666543321 12333455555555555
No 104
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=21.16 E-value=7.3e+02 Score=30.91 Aligned_cols=137 Identities=15% Similarity=0.238 Sum_probs=72.3
Q ss_pred CCCeEEEEEEEeCCCCceEeeeEEEEEEecccCCCCce--EEee------cCceEeeCCCeEEEEEc-------C-CCCC
Q 001079 702 GDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAK--ALNT------STATVLKPGRNTITVDL-------P-PQKP 765 (1162)
Q Consensus 702 ~d~~~L~V~l~s~LP~~I~id~v~l~L~~~~~~~~~~~--~l~s------~~~~~LkPG~Nki~l~~-------~-~~~~ 765 (1162)
+....+...+.+.-|.++.|.++++.+.+. ++.. .+.. .....+.|+...-.-++ . ....
T Consensus 355 ~~~~~l~~~i~s~a~~~L~I~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~ 430 (554)
T PF07919_consen 355 NQPWCLNSDIESFAPEPLEIEDISLEVLSS----NGGASCDVSSEDSSSPESGTVLQPGECREDQFCLRLDVQKLSLDDR 430 (554)
T ss_pred CCCeEEEccceecCCCceEEEEEEEEEecC----CCceeeeeccccccCCCccceeCccccccccccccccccccccccC
Confidence 455678888999999999999999999865 2222 1111 12345566543311111 1 1111
Q ss_pred eeEEEEEEEEEEcceEEEecccccCCCCCCCCccccccCCCCeEEEEcCCCccceeecccCCcccCceEEEEEEEEcCcc
Q 001079 766 GSYVLGALTGHIGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDY 845 (1162)
Q Consensus 766 G~y~l~si~i~ig~l~F~s~~f~~~~p~~~~~~~~~e~~~~p~~~v~~~~~~~~L~a~~~~P~L~g~~q~v~l~v~sg~~ 845 (1162)
+. .+..|.+.+ .|+...+.......... -.-|.+.|...++ .+.+...+.+-+|....+.++|.+.+.
T Consensus 431 ~~------~~~~g~~~I---~WrR~~~~s~~~~~~t~-l~lP~~~v~~~~~--~v~~~~p~~~~~~~~~~l~~~I~N~T~ 498 (554)
T PF07919_consen 431 RN------VTLLGSLVI---KWRRNSSNSSDPVVTTP-LPLPRVNVPSSPL--RVLASVPPSAIVGEPFTLSYTIENPTN 498 (554)
T ss_pred cc------ceeEEEEEE---EEEECCCCCCCceEEEE-eecCceEccCCCc--EEEEecCCccccCcEEEEEEEEECCCC
Confidence 11 122333332 34331010000101111 1224455555544 566666677789999999999999876
Q ss_pred cccceEEEE
Q 001079 846 SLKGAILQI 854 (1162)
Q Consensus 846 ~i~~~~L~l 854 (1162)
.+-.-.+++
T Consensus 499 ~~~~~~~~m 507 (554)
T PF07919_consen 499 HFQTFELSM 507 (554)
T ss_pred ccEEEEEEE
Confidence 654555544
No 105
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=21.08 E-value=1.4e+02 Score=22.57 Aligned_cols=28 Identities=21% Similarity=0.097 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 001079 220 KESLAFMFEMAHLHEDALREYDELELCY 247 (1162)
Q Consensus 220 KE~LA~~fe~~gL~edAL~~YdEL~~~f 247 (1162)
...||..|...|.+++|+..|.+.-...
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 5689999999999999999998876653
No 106
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=20.72 E-value=4.9e+02 Score=23.78 Aligned_cols=64 Identities=31% Similarity=0.558 Sum_probs=38.9
Q ss_pred ccCCCCeEEEEEEEeCCCCceEeeeEEEEEEecccCCCCceEEeecCceEeeCCCeE-EEEEcCCCCCeeEEE
Q 001079 699 LCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNT-ITVDLPPQKPGSYVL 770 (1162)
Q Consensus 699 ~~~~d~~~L~V~l~s~LP~~I~id~v~l~L~~~~~~~~~~~~l~s~~~~~LkPG~Nk-i~l~~~~~~~G~y~l 770 (1162)
...++.+.+.+.|.+.-... ...+.+++... +... ....--.|.||... +.+.......|.|.+
T Consensus 15 ~~~g~~~~i~~~V~N~G~~~--~~~~~v~~~~~-----~~~~-~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i 79 (101)
T PF07705_consen 15 VVPGEPVTITVTVKNNGTAD--AENVTVRLYLD-----GNSV-STVTIPSLAPGESETVTFTWTPPSPGSYTI 79 (101)
T ss_dssp EETTSEEEEEEEEEE-SSS---BEEEEEEEEET-----TEEE-EEEEESEB-TTEEEEEEEEEE-SS-CEEEE
T ss_pred ccCCCEEEEEEEEEECCCCC--CCCEEEEEEEC-----Ccee-ccEEECCcCCCcEEEEEEEEEeCCCCeEEE
Confidence 45678899999999985444 67777777542 2222 11111368999876 667666668899874
No 107
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=20.63 E-value=1.4e+02 Score=23.75 Aligned_cols=27 Identities=15% Similarity=-0.045 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHH
Q 001079 220 KESLAFMFEMAHLHEDALREYDELELC 246 (1162)
Q Consensus 220 KE~LA~~fe~~gL~edAL~~YdEL~~~ 246 (1162)
...||+.|+..|.+++|...|+..-..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 357999999999999999999887654
No 108
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=20.51 E-value=3.1e+02 Score=37.79 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCcc-hhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhc
Q 001079 564 TKGAANNYHCSWWKR-HGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSG 613 (1162)
Q Consensus 564 t~~Ai~~Yk~a~R~R-sa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~ 613 (1162)
.+.|+..|..+-+.. .-..+...||..|+++|+|++|..+|..++.....
T Consensus 285 ~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~ 335 (1157)
T PRK11447 285 GGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH 335 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 456666666653221 12245678899999999999999999998876554
No 109
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=20.51 E-value=1.5e+02 Score=31.91 Aligned_cols=31 Identities=29% Similarity=0.288 Sum_probs=20.4
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhhhc
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSG 613 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~ 613 (1162)
...-+|..++.+|+|++|..+|..++.....
T Consensus 146 al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 146 ALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3566677777777777777777776665444
No 110
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.43 E-value=3.6e+02 Score=30.44 Aligned_cols=61 Identities=15% Similarity=0.128 Sum_probs=43.6
Q ss_pred HhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhccCC
Q 001079 592 FKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDK 652 (1162)
Q Consensus 592 y~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs~~~ 652 (1162)
.-.+.|+.|..+|.+....|+-..=|...+.....+|+|+.+.++..|--.+-++...+++
T Consensus 25 gg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk 85 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK 85 (288)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh
Confidence 3455799999999999998886554446677777889999999887765555554443343
No 111
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=20.34 E-value=3e+02 Score=35.41 Aligned_cols=60 Identities=8% Similarity=-0.025 Sum_probs=31.1
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
...+|..|...|+|+.|...|..++...... ......++.++..+++.++-+...-+++.
T Consensus 321 ~~~La~~l~~~G~~~eA~~~l~~al~~~P~~------~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 321 RAMYARALRQVGQYTAASDEFVQLAREKGVT------SKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4445666666666666666666665542221 01122235556666666555555444443
Done!