Query 001079
Match_columns 1162
No_of_seqs 215 out of 256
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 09:58:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001079.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001079hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ro3_A PINS homolog, G-protein 94.5 0.23 7.7E-06 46.9 11.1 86 563-648 31-119 (164)
2 2v5f_A Prolyl 4-hydroxylase su 94.2 0.2 6.9E-06 46.2 9.6 86 584-669 8-94 (104)
3 3ro3_A PINS homolog, G-protein 94.2 0.32 1.1E-05 45.9 11.2 77 563-639 71-147 (164)
4 2ifu_A Gamma-SNAP; membrane fu 93.1 0.34 1.2E-05 53.2 10.7 88 565-653 139-226 (307)
5 3gw4_A Uncharacterized protein 93.0 0.52 1.8E-05 47.0 11.1 88 561-648 86-177 (203)
6 1qqe_A Vesicular transport pro 92.9 0.45 1.5E-05 51.9 11.3 88 562-649 98-186 (292)
7 3k9i_A BH0479 protein; putativ 92.6 0.33 1.1E-05 45.0 8.3 79 566-650 8-90 (117)
8 3gw4_A Uncharacterized protein 92.2 0.78 2.7E-05 45.7 11.1 86 562-647 47-136 (203)
9 2ifu_A Gamma-SNAP; membrane fu 92.1 1.1 3.7E-05 49.1 13.1 76 564-642 171-253 (307)
10 2xev_A YBGF; tetratricopeptide 92.1 0.58 2E-05 43.1 9.3 67 582-651 40-106 (129)
11 4ga2_A E3 SUMO-protein ligase 91.2 0.79 2.7E-05 44.7 9.6 49 584-638 34-82 (150)
12 3u3w_A Transcriptional activat 90.1 1.7 5.9E-05 46.9 12.0 88 561-648 175-267 (293)
13 2qfc_A PLCR protein; TPR, HTH, 90.0 2 6.7E-05 46.5 12.3 88 561-648 175-267 (293)
14 1qqe_A Vesicular transport pro 89.8 1.5 5.1E-05 47.6 11.3 84 564-647 60-147 (292)
15 2l6j_A TPR repeat-containing p 89.6 0.67 2.3E-05 41.4 7.0 52 584-635 41-92 (111)
16 2kck_A TPR repeat; tetratricop 88.8 1.3 4.3E-05 39.0 8.1 65 582-650 41-106 (112)
17 3q15_A PSP28, response regulat 88.6 1.5 5.2E-05 49.2 10.5 85 563-648 204-291 (378)
18 3ulq_A Response regulator aspa 88.6 2 6.9E-05 48.1 11.5 86 562-647 205-293 (383)
19 1elr_A TPR2A-domain of HOP; HO 88.5 1.9 6.5E-05 39.0 9.4 68 582-649 39-107 (131)
20 4gcn_A Protein STI-1; structur 88.4 1.9 6.5E-05 40.7 9.5 84 565-648 25-110 (127)
21 3ro2_A PINS homolog, G-protein 88.3 1.9 6.5E-05 45.8 10.5 84 563-646 245-328 (338)
22 3ulq_A Response regulator aspa 88.1 2.1 7E-05 48.0 11.2 85 563-647 165-253 (383)
23 3q15_A PSP28, response regulat 87.8 2.2 7.4E-05 47.9 11.1 85 562-646 162-250 (378)
24 3edt_B KLC 2, kinesin light ch 87.8 1.8 6.1E-05 45.0 9.7 76 564-639 24-103 (283)
25 3sf4_A G-protein-signaling mod 87.8 3.3 0.00011 45.7 12.5 86 563-648 249-337 (406)
26 3ro2_A PINS homolog, G-protein 87.6 2.5 8.5E-05 44.9 11.0 85 563-647 205-292 (338)
27 3sz7_A HSC70 cochaperone (SGT) 87.6 2.8 9.6E-05 40.8 10.5 80 565-650 28-108 (164)
28 4a1s_A PINS, partner of inscut 87.5 2.3 7.7E-05 47.6 11.0 54 187-247 63-116 (411)
29 2dba_A Smooth muscle cell asso 87.3 2.3 8E-05 39.6 9.4 63 581-649 65-127 (148)
30 4a1s_A PINS, partner of inscut 87.0 2.2 7.5E-05 47.7 10.5 86 563-648 285-370 (411)
31 3sf4_A G-protein-signaling mod 87.0 2.5 8.4E-05 46.8 10.8 69 582-650 228-296 (406)
32 3nf1_A KLC 1, kinesin light ch 86.3 3.5 0.00012 43.5 11.2 71 578-648 150-222 (311)
33 4gcn_A Protein STI-1; structur 85.9 2.3 8E-05 40.1 8.5 60 583-648 10-69 (127)
34 3u3w_A Transcriptional activat 85.8 2.3 8E-05 45.9 9.6 67 582-648 156-226 (293)
35 1elw_A TPR1-domain of HOP; HOP 85.7 3.5 0.00012 36.3 9.2 62 582-649 39-100 (118)
36 3upv_A Heat shock protein STI1 85.3 3.1 0.00011 38.3 9.0 78 565-648 21-99 (126)
37 2kat_A Uncharacterized protein 85.0 4 0.00014 37.0 9.5 61 582-648 20-80 (115)
38 3ma5_A Tetratricopeptide repea 84.2 2.8 9.5E-05 37.6 7.9 61 582-648 8-68 (100)
39 4ga2_A E3 SUMO-protein ligase 84.2 6 0.0002 38.3 10.8 98 544-647 18-129 (150)
40 2l6j_A TPR repeat-containing p 84.2 3.1 0.00011 36.8 8.2 64 583-652 6-69 (111)
41 2vyi_A SGTA protein; chaperone 84.1 4 0.00014 36.7 9.0 62 582-649 47-108 (131)
42 2lni_A Stress-induced-phosphop 84.1 3.9 0.00013 37.1 9.0 62 582-649 51-112 (133)
43 3nf1_A KLC 1, kinesin light ch 84.0 3.4 0.00012 43.6 9.7 77 563-639 49-129 (311)
44 3qky_A Outer membrane assembly 84.0 4.9 0.00017 42.2 10.9 66 584-652 151-226 (261)
45 1hh8_A P67PHOX, NCF-2, neutrop 83.9 3.4 0.00012 41.5 9.2 86 565-650 54-150 (213)
46 4gco_A Protein STI-1; structur 83.6 6.1 0.00021 37.2 10.3 81 564-650 29-110 (126)
47 1na0_A Designed protein CTPR3; 83.4 4.5 0.00016 35.9 9.0 62 582-649 44-105 (125)
48 3edt_B KLC 2, kinesin light ch 83.0 4.8 0.00016 41.6 10.2 85 563-647 65-156 (283)
49 3q49_B STIP1 homology and U bo 82.8 3.5 0.00012 38.1 8.2 61 582-648 44-104 (137)
50 2xcb_A PCRH, regulatory protei 81.7 6.8 0.00023 37.1 10.0 79 564-648 34-113 (142)
51 4gco_A Protein STI-1; structur 81.6 3.8 0.00013 38.7 7.9 60 584-649 16-75 (126)
52 3rkv_A Putative peptidylprolyl 81.1 6.7 0.00023 37.9 9.8 62 582-649 64-125 (162)
53 2yhc_A BAMD, UPF0169 lipoprote 80.4 3.7 0.00013 42.4 8.1 62 585-649 151-212 (225)
54 3gyz_A Chaperone protein IPGC; 80.1 5.2 0.00018 39.4 8.7 80 564-649 52-132 (151)
55 1hz4_A MALT regulatory protein 80.0 8.5 0.00029 42.5 11.4 77 563-639 75-153 (373)
56 2xev_A YBGF; tetratricopeptide 79.9 4.8 0.00016 36.7 7.9 63 584-649 5-67 (129)
57 2qfc_A PLCR protein; TPR, HTH, 79.6 6.2 0.00021 42.5 9.9 84 564-647 131-225 (293)
58 1a17_A Serine/threonine protei 79.5 6.4 0.00022 37.3 9.0 62 582-649 48-109 (166)
59 1na3_A Designed protein CTPR2; 79.4 6.8 0.00023 33.1 8.3 61 583-649 11-71 (91)
60 3upv_A Heat shock protein STI1 78.9 5.4 0.00018 36.6 7.9 60 584-649 7-66 (126)
61 2fo7_A Synthetic consensus TPR 78.7 7.3 0.00025 34.8 8.7 57 582-644 70-126 (136)
62 3qky_A Outer membrane assembly 78.7 13 0.00043 38.9 11.8 84 564-650 31-126 (261)
63 3vtx_A MAMA; tetratricopeptide 78.0 5.2 0.00018 39.2 8.0 54 585-644 9-62 (184)
64 1na3_A Designed protein CTPR2; 77.6 6.5 0.00022 33.3 7.6 47 582-634 44-90 (91)
65 4i17_A Hypothetical protein; T 77.4 7.5 0.00026 39.6 9.3 86 564-649 58-145 (228)
66 2fbn_A 70 kDa peptidylprolyl i 75.9 6.3 0.00022 39.5 8.1 60 585-644 42-111 (198)
67 4b4t_Q 26S proteasome regulato 75.8 16 0.00056 40.9 12.4 76 563-638 117-192 (434)
68 2vgx_A Chaperone SYCD; alterna 75.6 12 0.00042 36.0 9.8 79 564-648 37-116 (148)
69 1hh8_A P67PHOX, NCF-2, neutrop 75.6 12 0.00041 37.4 10.1 77 564-648 22-98 (213)
70 3q49_B STIP1 homology and U bo 75.1 8.7 0.0003 35.3 8.3 61 582-648 10-70 (137)
71 3as5_A MAMA; tetratricopeptide 75.1 10 0.00036 36.1 9.1 52 582-639 111-162 (186)
72 3vtx_A MAMA; tetratricopeptide 75.1 10 0.00034 37.1 9.1 62 582-649 108-169 (184)
73 3cv0_A Peroxisome targeting si 75.0 7.6 0.00026 41.2 8.9 61 582-642 241-307 (327)
74 3uq3_A Heat shock protein STI1 74.6 9.7 0.00033 38.8 9.2 67 582-648 39-106 (258)
75 3sz7_A HSC70 cochaperone (SGT) 74.6 8.3 0.00029 37.3 8.3 61 582-648 12-72 (164)
76 2fbn_A 70 kDa peptidylprolyl i 74.1 16 0.00054 36.5 10.5 62 582-649 89-150 (198)
77 3rkv_A Putative peptidylprolyl 73.9 5 0.00017 38.9 6.5 68 583-650 13-92 (162)
78 4i17_A Hypothetical protein; T 73.2 9.3 0.00032 38.9 8.7 79 565-650 24-105 (228)
79 1elr_A TPR2A-domain of HOP; HO 73.2 9.7 0.00033 34.0 7.9 58 583-646 6-63 (131)
80 1hxi_A PEX5, peroxisome target 73.1 11 0.00039 34.9 8.5 79 565-649 34-113 (121)
81 2kc7_A BFR218_protein; tetratr 72.6 7.1 0.00024 34.0 6.6 61 585-650 4-64 (99)
82 2kck_A TPR repeat; tetratricop 72.6 9.7 0.00033 33.1 7.6 61 583-649 8-68 (112)
83 1elw_A TPR1-domain of HOP; HOP 72.4 11 0.00037 33.0 7.9 61 583-649 6-66 (118)
84 2fo7_A Synthetic consensus TPR 71.6 14 0.00049 32.8 8.7 60 582-647 36-95 (136)
85 2lni_A Stress-induced-phosphop 71.5 6.5 0.00022 35.6 6.3 61 582-648 17-77 (133)
86 2vyi_A SGTA protein; chaperone 70.4 14 0.00048 32.9 8.3 61 582-648 13-73 (131)
87 3qwp_A SET and MYND domain-con 70.4 9.6 0.00033 44.4 8.8 91 544-635 333-427 (429)
88 2q7f_A YRRB protein; TPR, prot 70.0 12 0.0004 37.9 8.5 62 582-649 160-221 (243)
89 3ffl_A Anaphase-promoting comp 69.8 11 0.00037 38.4 7.8 88 558-645 37-146 (167)
90 1hz4_A MALT regulatory protein 69.7 22 0.00075 39.1 11.3 84 563-647 115-203 (373)
91 1kt0_A FKBP51, 51 kDa FK506-bi 69.7 18 0.0006 42.2 11.0 63 582-650 318-380 (457)
92 3as5_A MAMA; tetratricopeptide 69.6 20 0.0007 33.9 9.8 79 564-648 58-137 (186)
93 2kc7_A BFR218_protein; tetratr 69.4 6.6 0.00023 34.3 5.6 50 565-614 17-68 (99)
94 3n71_A Histone lysine methyltr 69.3 9.6 0.00033 45.3 8.6 93 544-637 355-451 (490)
95 1ihg_A Cyclophilin 40; ppiase 68.5 15 0.00051 41.6 9.8 62 582-649 274-335 (370)
96 1p5q_A FKBP52, FK506-binding p 68.1 12 0.0004 41.7 8.6 61 582-648 197-257 (336)
97 3qww_A SET and MYND domain-con 68.1 20 0.00069 41.8 10.9 88 561-648 318-412 (433)
98 2ho1_A Type 4 fimbrial biogene 67.9 23 0.00078 36.2 10.3 51 583-639 143-193 (252)
99 2q7f_A YRRB protein; TPR, prot 67.6 17 0.00058 36.6 9.1 28 584-611 94-121 (243)
100 3n71_A Histone lysine methyltr 67.4 25 0.00085 41.7 11.7 88 561-648 329-423 (490)
101 3ma5_A Tetratricopeptide repea 67.4 9.7 0.00033 33.9 6.4 53 565-617 24-77 (100)
102 1xnf_A Lipoprotein NLPI; TPR, 67.4 13 0.00044 38.4 8.3 57 582-644 78-134 (275)
103 1a17_A Serine/threonine protei 67.3 14 0.00048 34.8 8.0 58 583-646 15-72 (166)
104 3uq3_A Heat shock protein STI1 67.1 23 0.00078 35.9 10.1 24 222-245 10-33 (258)
105 1fch_A Peroxisomal targeting s 66.9 12 0.00041 40.7 8.3 80 565-644 268-353 (368)
106 1na0_A Designed protein CTPR3; 66.7 19 0.00065 31.6 8.3 61 582-648 10-70 (125)
107 2vq2_A PILW, putative fimbrial 66.6 23 0.00078 35.0 9.7 52 582-639 114-165 (225)
108 2dba_A Smooth muscle cell asso 66.1 11 0.00038 34.7 6.9 63 584-649 31-93 (148)
109 2yhc_A BAMD, UPF0169 lipoprote 65.9 27 0.00091 35.8 10.3 70 564-636 20-93 (225)
110 2if4_A ATFKBP42; FKBP-like, al 65.6 11 0.00037 42.0 7.7 61 583-649 232-292 (338)
111 3qwp_A SET and MYND domain-con 65.5 29 0.00099 40.4 11.6 79 579-657 327-410 (429)
112 3hym_B Cell division cycle pro 65.3 16 0.00054 38.8 8.7 85 565-649 176-264 (330)
113 2e2e_A Formate-dependent nitri 64.7 45 0.0015 32.1 11.3 82 564-651 60-145 (177)
114 2ho1_A Type 4 fimbrial biogene 64.6 18 0.00061 37.0 8.6 80 565-648 88-168 (252)
115 1xnf_A Lipoprotein NLPI; TPR, 64.5 21 0.00071 36.8 9.3 61 582-648 44-104 (275)
116 1wao_1 Serine/threonine protei 63.9 29 0.00099 40.7 11.3 62 582-649 41-102 (477)
117 4eqf_A PEX5-related protein; a 63.2 19 0.00064 39.4 9.0 78 565-648 82-160 (365)
118 3u4t_A TPR repeat-containing p 62.6 18 0.00062 37.4 8.3 60 584-649 77-136 (272)
119 3urz_A Uncharacterized protein 62.4 20 0.0007 36.3 8.6 61 583-649 56-116 (208)
120 4eqf_A PEX5-related protein; a 62.0 22 0.00074 38.9 9.2 74 565-644 230-304 (365)
121 3ieg_A DNAJ homolog subfamily 61.9 43 0.0015 35.6 11.5 61 584-650 275-335 (359)
122 3k9i_A BH0479 protein; putativ 61.6 20 0.00069 32.5 7.5 71 544-614 11-94 (117)
123 2pl2_A Hypothetical conserved 61.5 25 0.00087 35.8 9.1 81 563-650 99-180 (217)
124 2kat_A Uncharacterized protein 61.4 18 0.00062 32.4 7.2 52 565-616 36-88 (115)
125 2xcb_A PCRH, regulatory protei 60.7 23 0.00079 33.3 8.1 61 583-649 20-80 (142)
126 2vq2_A PILW, putative fimbrial 60.5 26 0.0009 34.5 8.8 82 564-649 58-141 (225)
127 1vjj_A Protein-glutamine gluta 60.2 50 0.0017 40.7 12.5 139 701-861 494-637 (692)
128 2vgx_A Chaperone SYCD; alterna 60.2 23 0.0008 34.0 8.1 61 583-649 23-83 (148)
129 1ihg_A Cyclophilin 40; ppiase 59.9 14 0.00047 41.9 7.3 67 584-650 226-302 (370)
130 3bee_A Putative YFRE protein; 59.9 14 0.00047 33.4 5.9 37 582-618 44-80 (93)
131 2vsy_A XCC0866; transferase, g 59.6 22 0.00076 42.1 9.4 79 565-649 74-156 (568)
132 3hym_B Cell division cycle pro 59.1 27 0.00093 36.8 9.2 62 582-649 237-298 (330)
133 1p5q_A FKBP52, FK506-binding p 59.0 20 0.0007 39.7 8.4 67 583-649 149-224 (336)
134 3ieg_A DNAJ homolog subfamily 58.7 22 0.00075 38.0 8.4 62 582-649 38-99 (359)
135 3mkr_A Coatomer subunit epsilo 58.3 25 0.00084 38.1 8.7 52 582-639 201-252 (291)
136 1fch_A Peroxisomal targeting s 57.8 28 0.00097 37.6 9.2 23 222-244 69-91 (368)
137 2r5s_A Uncharacterized protein 57.6 27 0.00091 34.2 8.2 63 582-648 109-171 (176)
138 1kt0_A FKBP51, 51 kDa FK506-bi 57.3 25 0.00084 40.9 9.0 68 583-650 270-346 (457)
139 3gyz_A Chaperone protein IPGC; 57.1 28 0.00096 34.0 8.1 61 583-649 38-98 (151)
140 2c2l_A CHIP, carboxy terminus 55.9 23 0.00077 38.1 7.9 54 582-641 39-92 (281)
141 4gyw_A UDP-N-acetylglucosamine 55.3 25 0.00084 43.9 9.0 60 582-647 112-171 (723)
142 4b4t_Q 26S proteasome regulato 55.3 45 0.0016 37.1 10.6 82 563-644 77-158 (434)
143 2vsy_A XCC0866; transferase, g 54.9 33 0.0011 40.6 9.8 76 564-645 39-115 (568)
144 3cv0_A Peroxisome targeting si 54.7 35 0.0012 35.9 9.1 79 564-648 188-267 (327)
145 4abn_A Tetratricopeptide repea 54.6 27 0.00093 40.7 8.8 73 564-642 237-313 (474)
146 1hxi_A PEX5, peroxisome target 54.0 36 0.0012 31.3 8.0 60 584-649 20-79 (121)
147 2y4t_A DNAJ homolog subfamily 54.0 34 0.0012 38.3 9.3 79 565-649 43-122 (450)
148 2e2e_A Formate-dependent nitri 51.7 41 0.0014 32.5 8.4 61 582-648 45-108 (177)
149 4abn_A Tetratricopeptide repea 51.1 47 0.0016 38.6 10.1 76 563-644 83-160 (474)
150 4gyw_A UDP-N-acetylglucosamine 50.5 33 0.0011 42.8 9.0 80 564-649 59-139 (723)
151 2c2l_A CHIP, carboxy terminus 50.3 36 0.0012 36.5 8.3 62 583-650 6-67 (281)
152 2q3z_A Transglutaminase 2; tra 50.3 78 0.0027 39.0 11.9 130 701-861 485-630 (687)
153 3u4t_A TPR repeat-containing p 50.2 27 0.00092 36.0 7.1 86 563-651 18-104 (272)
154 2gw1_A Mitochondrial precursor 47.3 40 0.0014 38.3 8.5 80 565-650 23-102 (514)
155 2hr2_A Hypothetical protein; a 47.1 75 0.0026 31.9 9.4 77 583-659 59-143 (159)
156 3lpz_A GET4 (YOR164C homolog); 46.6 1.8E+02 0.0062 32.7 13.4 83 588-672 42-126 (336)
157 3txn_A 26S proteasome regulato 46.2 94 0.0032 35.8 11.3 54 558-613 76-131 (394)
158 2gw1_A Mitochondrial precursor 45.0 30 0.001 39.3 7.0 62 582-643 373-437 (514)
159 1pc2_A Mitochondria fission pr 44.5 23 0.00079 35.4 5.1 28 583-610 73-100 (152)
160 2pl2_A Hypothetical conserved 44.4 23 0.00079 36.1 5.4 71 565-641 135-205 (217)
161 2xpi_A Anaphase-promoting comp 43.4 54 0.0018 38.3 9.0 85 564-648 457-543 (597)
162 2pzi_A Probable serine/threoni 43.3 27 0.00092 42.9 6.6 79 564-649 449-528 (681)
163 4g1t_A Interferon-induced prot 43.1 34 0.0012 38.7 7.1 30 583-612 96-125 (472)
164 2hr2_A Hypothetical protein; a 42.5 53 0.0018 32.9 7.5 65 584-649 14-85 (159)
165 2y4t_A DNAJ homolog subfamily 42.5 49 0.0017 37.0 8.2 55 583-643 179-233 (450)
166 3fp2_A TPR repeat-containing p 42.1 58 0.002 37.3 8.9 77 564-646 326-403 (537)
167 3idu_A Uncharacterized protein 41.4 2E+02 0.0068 27.7 11.0 68 696-772 26-94 (127)
168 3qww_A SET and MYND domain-con 41.1 36 0.0012 39.7 6.9 68 544-612 344-413 (433)
169 4g1t_A Interferon-induced prot 40.6 68 0.0023 36.1 9.1 64 584-647 54-123 (472)
170 1w3b_A UDP-N-acetylglucosamine 40.1 74 0.0025 34.9 9.1 60 583-648 273-332 (388)
171 2if4_A ATFKBP42; FKBP-like, al 39.2 16 0.00054 40.7 3.3 68 584-651 182-260 (338)
172 2wpv_A GET4, UPF0363 protein Y 39.2 2.2E+02 0.0077 31.6 12.6 80 591-672 43-124 (312)
173 3fp2_A TPR repeat-containing p 38.2 48 0.0017 37.9 7.4 53 582-634 379-431 (537)
174 1g0d_A Protein-glutamine gamma 37.1 1.2E+02 0.0041 37.4 10.6 129 701-860 484-627 (695)
175 3qou_A Protein YBBN; thioredox 36.3 62 0.0021 34.6 7.4 59 582-644 220-278 (287)
176 1nzn_A CGI-135 protein, fissio 36.3 28 0.00096 33.7 4.1 29 582-610 75-103 (126)
177 2xpi_A Anaphase-promoting comp 35.2 1.2E+02 0.0042 35.1 10.4 63 581-649 516-578 (597)
178 1ex0_A Coagulation factor XIII 35.0 77 0.0026 39.3 8.5 129 701-860 529-672 (731)
179 3qou_A Protein YBBN; thioredox 33.6 51 0.0017 35.3 6.2 49 564-612 133-182 (287)
180 3urz_A Uncharacterized protein 33.4 75 0.0026 31.9 7.2 51 564-614 70-121 (208)
181 2pzi_A Probable serine/threoni 33.0 1.1E+02 0.0036 37.6 9.6 55 582-642 434-488 (681)
182 1w3b_A UDP-N-acetylglucosamine 32.5 91 0.0031 34.1 8.2 61 582-648 238-298 (388)
183 1ouv_A Conserved hypothetical 30.1 1.2E+02 0.004 31.4 8.1 71 564-643 94-172 (273)
184 3mkr_A Coatomer subunit epsilo 28.9 1.4E+02 0.0047 32.0 8.7 56 589-650 174-229 (291)
185 4f3v_A ESX-1 secretion system 28.3 2.1E+02 0.0073 31.2 10.0 83 564-651 151-238 (282)
186 1wao_1 Serine/threonine protei 27.9 36 0.0012 39.8 4.0 60 584-649 9-68 (477)
187 2h6f_A Protein farnesyltransfe 27.0 1.1E+02 0.0037 34.7 7.7 79 564-648 148-227 (382)
188 2v5f_A Prolyl 4-hydroxylase su 26.9 1.7E+02 0.0057 26.1 7.6 52 563-614 27-79 (104)
189 1zu2_A Mitochondrial import re 26.9 49 0.0017 33.2 4.1 51 562-612 60-122 (158)
190 4b4t_R RPN7, 26S proteasome re 25.5 1.7E+02 0.006 33.6 9.2 34 582-615 132-165 (429)
191 1ouv_A Conserved hypothetical 25.3 1.7E+02 0.0057 30.2 8.3 75 565-648 59-141 (273)
192 2wpv_A GET4, UPF0363 protein Y 24.2 2.3E+02 0.0079 31.5 9.4 103 544-649 18-124 (312)
193 1y8m_A FIS1; mitochondria, unk 20.6 1.3E+02 0.0044 29.8 5.6 44 582-629 78-121 (144)
No 1
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=94.53 E-value=0.23 Score=46.92 Aligned_cols=86 Identities=14% Similarity=0.057 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchh---
Q 001079 563 LTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG--- 639 (1162)
Q Consensus 563 Lt~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~d--- 639 (1162)
...+|+..+...+.......+...+|..|+.+|+|++|..+|..++..+...+.......++..++.|+..+++.++
T Consensus 31 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 110 (164)
T 3ro3_A 31 AHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 110 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44555566665554444445688899999999999999999999999999888888778888899999998888754
Q ss_pred HHHHHHHHh
Q 001079 640 YLLSCVRLL 648 (1162)
Q Consensus 640 Yv~~~l~LL 648 (1162)
|...++++.
T Consensus 111 ~~~~a~~~~ 119 (164)
T 3ro3_A 111 YHLKHLAIA 119 (164)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 2
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.19 E-value=0.2 Score=46.24 Aligned_cols=86 Identities=16% Similarity=0.083 Sum_probs=61.4
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCC-cchHHHHHHHHHHHHHHHhccchhHHHHHHHHhccCCCCCCHHHHHH
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEG-WQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDKGLFSTKERQA 662 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~eg-W~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs~~~~~~s~~eR~~ 662 (1162)
-.+||..+|..|+|..|...|..++..+..+. +..-...++..++.|+.++++.+.=+...-+++...+..........
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 57899999999999999999999999887654 44455689999999999999987655555555543332111112224
Q ss_pred HHHHHHH
Q 001079 663 FQSEVIS 669 (1162)
Q Consensus 663 y~~ell~ 669 (1162)
+++.+++
T Consensus 88 ~~~~~~~ 94 (104)
T 2v5f_A 88 YFEYIMA 94 (104)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 3
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=94.16 E-value=0.32 Score=45.86 Aligned_cols=77 Identities=9% Similarity=-0.168 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchh
Q 001079 563 LTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 639 (1162)
Q Consensus 563 Lt~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~d 639 (1162)
..++|++.+...+.......+...+|..|+.+|+|++|..+|..++..+...+........+..++.|+..+++.++
T Consensus 71 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 147 (164)
T 3ro3_A 71 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 147 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHH
Confidence 44555555655553333345678999999999999999999999999999888777778888899999988887754
No 4
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=93.10 E-value=0.34 Score=53.23 Aligned_cols=88 Identities=16% Similarity=0.042 Sum_probs=65.8
Q ss_pred HHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHH
Q 001079 565 KGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSC 644 (1162)
Q Consensus 565 ~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~ 644 (1162)
++|+..+...+..+.+..+...||.+|+++|+|++|..+|..++..+.+.+........+...+.|+..+++.++=+...
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33333333334445556677888999999999999999999999998888876666668888888888888888888888
Q ss_pred HHHhccCCC
Q 001079 645 VRLLSLDKG 653 (1162)
Q Consensus 645 l~LLs~~~~ 653 (1162)
-+.+ ....
T Consensus 219 ~~al-~~p~ 226 (307)
T 2ifu_A 219 RESY-SIPG 226 (307)
T ss_dssp HHHT-TSTT
T ss_pred HHHh-CCCC
Confidence 7777 6543
No 5
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=93.04 E-value=0.52 Score=47.03 Aligned_cols=88 Identities=14% Similarity=0.012 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhcC-CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchh
Q 001079 561 LELTKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 639 (1162)
Q Consensus 561 l~Lt~~Ai~~Yk~a~-R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~d 639 (1162)
++..++|++.+...+ .......+...+|..|+.+|+|++|..+|..++......+-......++..++.|+..+++.++
T Consensus 86 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 165 (203)
T 3gw4_A 86 RRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLE 165 (203)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHH
Confidence 345566777777766 3334446688999999999999999999999999999888887778889999999999998755
Q ss_pred ---HHHHHHHHh
Q 001079 640 ---YLLSCVRLL 648 (1162)
Q Consensus 640 ---Yv~~~l~LL 648 (1162)
|+..++++.
T Consensus 166 A~~~~~~al~~~ 177 (203)
T 3gw4_A 166 AQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444
No 6
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.94 E-value=0.45 Score=51.86 Aligned_cols=88 Identities=14% Similarity=0.115 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCCcchhHHhhHHHHHHHHhc-CCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhH
Q 001079 562 ELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKH-GNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGY 640 (1162)
Q Consensus 562 ~Lt~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~-gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dY 640 (1162)
...++|+..|...|+...+......||..|... |+|++|..+|..++..+...+.......++..++.++.++++.++=
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 345677778888887777677788999999996 9999999999999999999887776678888999999999988765
Q ss_pred HHHHHHHhc
Q 001079 641 LLSCVRLLS 649 (1162)
Q Consensus 641 v~~~l~LLs 649 (1162)
+...-+.+.
T Consensus 178 ~~~~~~al~ 186 (292)
T 1qqe_A 178 SDIYSKLIK 186 (292)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
No 7
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=92.60 E-value=0.33 Score=44.96 Aligned_cols=79 Identities=9% Similarity=-0.021 Sum_probs=59.3
Q ss_pred HHHHHHHhcCCc----chhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHH
Q 001079 566 GAANNYHCSWWK----RHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYL 641 (1162)
Q Consensus 566 ~Ai~~Yk~a~R~----Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv 641 (1162)
.|+..|.++=.. .....+...||..|+.+|+|++|..+|..++..+... ..++..++.|+..+++.++-+
T Consensus 8 ~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 8 QAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH------QALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp CCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHcCCHHHHH
Confidence 344555554322 3333557889999999999999999999999987665 456778999999999998777
Q ss_pred HHHHHHhcc
Q 001079 642 LSCVRLLSL 650 (1162)
Q Consensus 642 ~~~l~LLs~ 650 (1162)
...-+.+..
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 766665543
No 8
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=92.23 E-value=0.78 Score=45.72 Aligned_cols=86 Identities=13% Similarity=-0.036 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCC-cchHHHHHHHHHHHHHHHhccchh-
Q 001079 562 ELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEG-WQDLLAEVLPNLAECQKILNDEAG- 639 (1162)
Q Consensus 562 ~Lt~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~eg-W~~L~~~~L~~~a~Clk~L~~~~d- 639 (1162)
...++|++.+...+.......+...+|..|+.+|+|++|..+|..++..+...+ -.......+..++.|+..+++.++
T Consensus 47 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 126 (203)
T 3gw4_A 47 ASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGA 126 (203)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 355667777777775555556788999999999999999999999999998888 343567788888889888888744
Q ss_pred --HHHHHHHH
Q 001079 640 --YLLSCVRL 647 (1162)
Q Consensus 640 --Yv~~~l~L 647 (1162)
|+..++++
T Consensus 127 ~~~~~~al~~ 136 (203)
T 3gw4_A 127 RQEYEKSLVY 136 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 44444433
No 9
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=92.11 E-value=1.1 Score=49.14 Aligned_cols=76 Identities=16% Similarity=-0.038 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcC-------CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhcc
Q 001079 564 TKGAANNYHCSW-------WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILND 636 (1162)
Q Consensus 564 t~~Ai~~Yk~a~-------R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~ 636 (1162)
.+.|+..|..+- -..........+|..|+.+|+|.+|..+|..++ .... ....-+...+..+++.+ ..++
T Consensus 171 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~-~~~~~e~~~l~~l~~~~-~~~d 247 (307)
T 2ifu_A 171 FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG-FSGSEDCAALEDLLQAY-DEQD 247 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT-STTSHHHHHHHHHHHHH-HTTC
T ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC-CCCCHHHHHHHHHHHHH-HhcC
Confidence 345666666653 111222356778888899999999999999999 4433 33444566777777765 3455
Q ss_pred chhHHH
Q 001079 637 EAGYLL 642 (1162)
Q Consensus 637 ~~dYv~ 642 (1162)
.+.|-.
T Consensus 248 ~~~~~~ 253 (307)
T 2ifu_A 248 EEQLLR 253 (307)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555555
No 10
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=92.11 E-value=0.58 Score=43.15 Aligned_cols=67 Identities=10% Similarity=-0.001 Sum_probs=54.1
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhccC
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLD 651 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs~~ 651 (1162)
.....+|..|+..|+|++|..+|..++..+....+ ....+..++.|+.++++.++-+...-+++..+
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK---AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45778999999999999999999999998876654 24567788999999999887666665566543
No 11
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=91.21 E-value=0.79 Score=44.71 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=24.5
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccch
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEA 638 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~ 638 (1162)
...||.+|+..|+|++|..+|..++..-... ...+..++.|+.++++.+
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTYINVQERD------PKAHRFLGLLYELEENTD 82 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCchH
Confidence 4455566666666666666666555543222 223334444555544443
No 12
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=90.05 E-value=1.7 Score=46.93 Aligned_cols=88 Identities=13% Similarity=0.122 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhc-CCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccc-h
Q 001079 561 LELTKGAANNYHCS-WWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDE-A 638 (1162)
Q Consensus 561 l~Lt~~Ai~~Yk~a-~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~-~ 638 (1162)
++..++|+..+... +-......+...||..|+.+|+|++|..+|..++......+-......++..++.|+.++++. +
T Consensus 175 ~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 254 (293)
T 3u3w_A 175 IDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEA 254 (293)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHH
Confidence 33455566666665 323333346789999999999999999999999999988887777889999999999999853 3
Q ss_pred ---hHHHHHHHHh
Q 001079 639 ---GYLLSCVRLL 648 (1162)
Q Consensus 639 ---dYv~~~l~LL 648 (1162)
+|.+.++++.
T Consensus 255 ~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 255 EIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555444
No 13
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=89.95 E-value=2 Score=46.52 Aligned_cols=88 Identities=11% Similarity=0.124 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhcCCcch-hHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccch-
Q 001079 561 LELTKGAANNYHCSWWKRH-GVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEA- 638 (1162)
Q Consensus 561 l~Lt~~Ai~~Yk~a~R~Rs-a~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~- 638 (1162)
++..++|+..+...+.... ...+...+|..|+.+|+|++|..+|..++......+-......++..++.|+.++++.+
T Consensus 175 ~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 254 (293)
T 2qfc_A 175 IDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEA 254 (293)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHH
Confidence 3355566665555542222 22567899999999999999999999999988877777777889999999999998864
Q ss_pred ---hHHHHHHHHh
Q 001079 639 ---GYLLSCVRLL 648 (1162)
Q Consensus 639 ---dYv~~~l~LL 648 (1162)
+|.+.++++.
T Consensus 255 Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 255 EIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4566666555
No 14
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.82 E-value=1.5 Score=47.64 Aligned_cols=84 Identities=18% Similarity=-0.024 Sum_probs=64.4
Q ss_pred HHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHH-hccchh---
Q 001079 564 TKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKI-LNDEAG--- 639 (1162)
Q Consensus 564 t~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~-L~~~~d--- 639 (1162)
..+|+..+...|....+.....++|..|..+|+|++|..+|..++..|...|........+..++.++.. +++.++
T Consensus 60 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~ 139 (292)
T 1qqe_A 60 FLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAID 139 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 3445555555554445556678999999999999999999999999999999887778888899999988 488754
Q ss_pred HHHHHHHH
Q 001079 640 YLLSCVRL 647 (1162)
Q Consensus 640 Yv~~~l~L 647 (1162)
|.+-++++
T Consensus 140 ~~~~Al~~ 147 (292)
T 1qqe_A 140 CYELAGEW 147 (292)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 15
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=89.65 E-value=0.67 Score=41.35 Aligned_cols=52 Identities=17% Similarity=0.110 Sum_probs=22.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhc
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILN 635 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~ 635 (1162)
...+|..|++.|+|++|...|..++......+-.......+..++.|+..++
T Consensus 41 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 92 (111)
T 2l6j_A 41 YSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVG 92 (111)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555554444444333222222333334444443333
No 16
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=88.78 E-value=1.3 Score=39.04 Aligned_cols=65 Identities=12% Similarity=0.104 Sum_probs=50.0
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHh-ccchhHHHHHHHHhcc
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKIL-NDEAGYLLSCVRLLSL 650 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L-~~~~dYv~~~l~LLs~ 650 (1162)
.+...+|..|+..|+|++|..+|..++..... .....++..++.|+.++ ++.++-+...-+++..
T Consensus 41 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 41 KYWLMKGKALYNLERYEEAVDCYNYVINVIED----EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC----TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc----cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 34678999999999999999999999987654 11245677888999889 8887766666655543
No 17
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=88.58 E-value=1.5 Score=49.16 Aligned_cols=85 Identities=13% Similarity=-0.015 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchh---
Q 001079 563 LTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG--- 639 (1162)
Q Consensus 563 Lt~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~d--- 639 (1162)
..++|++.++..+.......+...||..|+.+|+|++|..+|..++..+...+-... ...+..++.|+.++++.++
T Consensus 204 ~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~ 282 (378)
T 3q15_A 204 HLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQ 282 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHH
Confidence 445566666666644444556788999999999999999999999998887666555 7788889999998888754
Q ss_pred HHHHHHHHh
Q 001079 640 YLLSCVRLL 648 (1162)
Q Consensus 640 Yv~~~l~LL 648 (1162)
|.+.++++.
T Consensus 283 ~~~~al~~~ 291 (378)
T 3q15_A 283 FIEEGLDHI 291 (378)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 555555443
No 18
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=88.58 E-value=2 Score=48.08 Aligned_cols=86 Identities=9% Similarity=-0.016 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchh--
Q 001079 562 ELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG-- 639 (1162)
Q Consensus 562 ~Lt~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~d-- 639 (1162)
+..++|++.+...+.......+...||..|+.+|+|++|..+|..++..+...+-..-...++..++.|+.++++.++
T Consensus 205 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 284 (383)
T 3ulq_A 205 SHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAH 284 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHH
Confidence 345566666666664444445677899999999999999999999998888776533337778888888888887643
Q ss_pred -HHHHHHHH
Q 001079 640 -YLLSCVRL 647 (1162)
Q Consensus 640 -Yv~~~l~L 647 (1162)
|...++++
T Consensus 285 ~~~~~al~~ 293 (383)
T 3ulq_A 285 EYHSKGMAY 293 (383)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 44444433
No 19
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=88.54 E-value=1.9 Score=38.99 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=52.7
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcC-CcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGE-GWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~e-gW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
.+...+|..|+..|+|++|..+|..++...... +-......++..++.|+.++++.++-+...-+.+.
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 457889999999999999999999999988764 33333366788889999999988765555544444
No 20
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=88.42 E-value=1.9 Score=40.72 Aligned_cols=84 Identities=17% Similarity=0.120 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCCc-chhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCc-chHHHHHHHHHHHHHHHhccchhHHH
Q 001079 565 KGAANNYHCSWWK-RHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGW-QDLLAEVLPNLAECQKILNDEAGYLL 642 (1162)
Q Consensus 565 ~~Ai~~Yk~a~R~-Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW-~~L~~~~L~~~a~Clk~L~~~~dYv~ 642 (1162)
++|+..|.++=.. ..-..+...+|..|+++|+|++|...|..++.......- ....+.++..+..|+..+++.++=+.
T Consensus 25 ~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~ 104 (127)
T 4gcn_A 25 EKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQ 104 (127)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4566666654211 111245678999999999999999999999987765442 23345678888899998888866555
Q ss_pred HHHHHh
Q 001079 643 SCVRLL 648 (1162)
Q Consensus 643 ~~l~LL 648 (1162)
..-+.|
T Consensus 105 ~~~kal 110 (127)
T 4gcn_A 105 WFHRSL 110 (127)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 21
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=88.29 E-value=1.9 Score=45.79 Aligned_cols=84 Identities=8% Similarity=-0.165 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHH
Q 001079 563 LTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1162)
Q Consensus 563 Lt~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~ 642 (1162)
..++++..+...+-......+...+|..|+..|+|++|..+|..++......+-......++..++.|+.++++.++-+.
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 33444455554443333345577889999999999999999999988887777666667788888888888888765444
Q ss_pred HHHH
Q 001079 643 SCVR 646 (1162)
Q Consensus 643 ~~l~ 646 (1162)
..-+
T Consensus 325 ~~~~ 328 (338)
T 3ro2_A 325 FAEK 328 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 22
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=88.12 E-value=2.1 Score=48.02 Aligned_cols=85 Identities=14% Similarity=0.201 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhcCC-cchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchh--
Q 001079 563 LTKGAANNYHCSWW-KRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG-- 639 (1162)
Q Consensus 563 Lt~~Ai~~Yk~a~R-~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~d-- 639 (1162)
...+|++.|...+. ......+...||..|..+|+|++|..+|..++..+...+-......++..++.|+..+++.++
T Consensus 165 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~ 244 (383)
T 3ulq_A 165 YARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAI 244 (383)
T ss_dssp HHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 45667777777763 333345688999999999999999999999999999988777778889999999999888754
Q ss_pred -HHHHHHHH
Q 001079 640 -YLLSCVRL 647 (1162)
Q Consensus 640 -Yv~~~l~L 647 (1162)
|.+.++++
T Consensus 245 ~~~~~al~~ 253 (383)
T 3ulq_A 245 PYFKRAIAV 253 (383)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 55555544
No 23
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=87.83 E-value=2.2 Score=47.89 Aligned_cols=85 Identities=16% Similarity=0.021 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhcCC-cchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchh-
Q 001079 562 ELTKGAANNYHCSWW-KRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG- 639 (1162)
Q Consensus 562 ~Lt~~Ai~~Yk~a~R-~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~d- 639 (1162)
...++|++.|...+. ......+...||..|+.+|+|++|..+|..++..+...+-......++..++.|+..+++.++
T Consensus 162 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A 241 (378)
T 3q15_A 162 YHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMA 241 (378)
T ss_dssp HHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 345667777777653 333345577999999999999999999999999999888777888899999999999888754
Q ss_pred --HHHHHHH
Q 001079 640 --YLLSCVR 646 (1162)
Q Consensus 640 --Yv~~~l~ 646 (1162)
|...+++
T Consensus 242 ~~~~~~al~ 250 (378)
T 3q15_A 242 VEHFQKAAK 250 (378)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 4444444
No 24
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=87.82 E-value=1.8 Score=44.97 Aligned_cols=76 Identities=17% Similarity=0.043 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcC--CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcC--CcchHHHHHHHHHHHHHHHhccchh
Q 001079 564 TKGAANNYHCSW--WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGE--GWQDLLAEVLPNLAECQKILNDEAG 639 (1162)
Q Consensus 564 t~~Ai~~Yk~a~--R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~e--gW~~L~~~~L~~~a~Clk~L~~~~d 639 (1162)
.++|++.+.... .......+...+|..|+..|+|++|..+|..++..+... +-......++..++.|+..+++.++
T Consensus 24 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 103 (283)
T 3edt_B 24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKE 103 (283)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHH
Confidence 334444444432 112233457889999999999999999999999988654 3344556788888888888887754
No 25
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=87.79 E-value=3.3 Score=45.73 Aligned_cols=86 Identities=8% Similarity=-0.134 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchh---
Q 001079 563 LTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG--- 639 (1162)
Q Consensus 563 Lt~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~d--- 639 (1162)
..++|+..+...+-......+...+|..|+..|+|++|..+|..++......+-......++..++.|+..+++.++
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 44555555555553344345678999999999999999999999999999888777778889999999999998755
Q ss_pred HHHHHHHHh
Q 001079 640 YLLSCVRLL 648 (1162)
Q Consensus 640 Yv~~~l~LL 648 (1162)
|.+.++++.
T Consensus 329 ~~~~al~~~ 337 (406)
T 3sf4_A 329 FAEKHLEIS 337 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444455444
No 26
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=87.65 E-value=2.5 Score=44.86 Aligned_cols=85 Identities=14% Similarity=0.043 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchh---
Q 001079 563 LTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG--- 639 (1162)
Q Consensus 563 Lt~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~d--- 639 (1162)
..++++..+...+.......+...+|..|+..|+|++|..+|..++..+...+-......++..++.|+..+++.++
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 33445555555553344445688999999999999999999999999998888777778888899999999888755
Q ss_pred HHHHHHHH
Q 001079 640 YLLSCVRL 647 (1162)
Q Consensus 640 Yv~~~l~L 647 (1162)
|++.++++
T Consensus 285 ~~~~a~~~ 292 (338)
T 3ro2_A 285 YHLKHLAI 292 (338)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 27
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=87.56 E-value=2.8 Score=40.78 Aligned_cols=80 Identities=14% Similarity=0.041 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCC-cchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHH
Q 001079 565 KGAANNYHCSWW-KRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLS 643 (1162)
Q Consensus 565 ~~Ai~~Yk~a~R-~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~ 643 (1162)
+.|+..|..+-+ ......+...+|..|+++|+|++|..+|..++...... ...+..++.|+..+++.++-+..
T Consensus 28 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~ 101 (164)
T 3sz7_A 28 SKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY------SKAWSRLGLARFDMADYKGAKEA 101 (164)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHH
Confidence 445555555421 11123567899999999999999999999999876543 45677889999999998765555
Q ss_pred HHHHhcc
Q 001079 644 CVRLLSL 650 (1162)
Q Consensus 644 ~l~LLs~ 650 (1162)
.-+.+..
T Consensus 102 ~~~al~~ 108 (164)
T 3sz7_A 102 YEKGIEA 108 (164)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5444443
No 28
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=87.48 E-value=2.3 Score=47.62 Aligned_cols=54 Identities=11% Similarity=0.019 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCCchHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 001079 187 TLDRRVQFFEDEIRKLSELRFMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCY 247 (1162)
Q Consensus 187 sFd~rv~~yee~ir~~~~~R~~pgWnF~~~FilKE~LA~~fe~~gL~edAL~~YdEL~~~f 247 (1162)
-|+.-+..|++-++... + +.-....+...||..|...|.+++|+..|++.-..+
T Consensus 63 ~~~~A~~~~~~al~~~~------~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (411)
T 4a1s_A 63 DCRAGVAFFQAAIQAGT------E-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA 116 (411)
T ss_dssp CHHHHHHHHHHHHHHCC------S-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcc------c-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 46777777777766422 2 333333455678889999999999999888866553
No 29
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.25 E-value=2.3 Score=39.59 Aligned_cols=63 Identities=24% Similarity=0.239 Sum_probs=49.9
Q ss_pred HHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 581 VVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 581 ~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
..+...+|..|++.|+|++|..+|..++..+... ...+..++.|+..+++.++-+...-+.+.
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD------VKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567889999999999999999999999876543 35566788899999988776665555554
No 30
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=87.05 E-value=2.2 Score=47.74 Aligned_cols=86 Identities=9% Similarity=-0.127 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHH
Q 001079 563 LTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1162)
Q Consensus 563 Lt~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~ 642 (1162)
..++|++.+...+.......+...+|.+|+..|+|++|..+|..++..+...+-......++..++.|+.++++.++=+.
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 34455555555553344445678899999999999999999999999988887777777888899999999998865444
Q ss_pred HHHHHh
Q 001079 643 SCVRLL 648 (1162)
Q Consensus 643 ~~l~LL 648 (1162)
..-+.+
T Consensus 365 ~~~~al 370 (411)
T 4a1s_A 365 YAEQHL 370 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 443333
No 31
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=87.03 E-value=2.5 Score=46.76 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=47.5
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhcc
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSL 650 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs~ 650 (1162)
.+...+|..|+..|+|++|..+|..++..+...+-......++..++.|+.++++.++=+...-+.+..
T Consensus 228 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 228 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 356667777777777777777777777777777666666667777777777777766666666655553
No 32
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=86.30 E-value=3.5 Score=43.53 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=54.7
Q ss_pred chhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcC--CcchHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Q 001079 578 RHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGE--GWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLL 648 (1162)
Q Consensus 578 Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~e--gW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LL 648 (1162)
.....+...+|..|+..|+|++|..+|..++..+... +.......++..++.|+..+++.++-+...-+.+
T Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334567889999999999999999999999988765 3345556788889999999998865444443333
No 33
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=85.88 E-value=2.3 Score=40.07 Aligned_cols=60 Identities=15% Similarity=0.238 Sum_probs=46.8
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLL 648 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LL 648 (1162)
...+||..||++|+|++|..+|..++...... ...+..++.|+.++++.++=+..+-+.+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~------~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN------ITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 35689999999999999999999999875543 3466778899999998866555544433
No 34
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=85.78 E-value=2.3 Score=45.90 Aligned_cols=67 Identities=10% Similarity=0.127 Sum_probs=54.2
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcC-CcchHHHHHHHHHHHHHHHhccchh---HHHHHHHHh
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGE-GWQDLLAEVLPNLAECQKILNDEAG---YLLSCVRLL 648 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~e-gW~~L~~~~L~~~a~Clk~L~~~~d---Yv~~~l~LL 648 (1162)
.+...||..|+..|+|++|..+|..++..+... +-......++..++.|+.++++-++ |...++++.
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999988766 5666667899999999999888754 545455443
No 35
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=85.68 E-value=3.5 Score=36.34 Aligned_cols=62 Identities=21% Similarity=0.104 Sum_probs=49.0
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
.+...+|..|+..|+|++|..+|..++...... ...+..++.|+..+++.++-+...-+.+.
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 39 VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW------GKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 457889999999999999999999999876542 34567788899899888776666655554
No 36
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=85.27 E-value=3.1 Score=38.29 Aligned_cols=78 Identities=14% Similarity=-0.048 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCC-cchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHH
Q 001079 565 KGAANNYHCSWW-KRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLS 643 (1162)
Q Consensus 565 ~~Ai~~Yk~a~R-~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~ 643 (1162)
+.|+..|..+=+ ...-..+...+|..|+.+|+|++|...|..++...... ...+..++.|+..+++.++-+..
T Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~ 94 (126)
T 3upv_A 21 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF------VRAYIRKATAQIAVKEYASALET 94 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHhCHHHHHHH
Confidence 445555555421 11122557889999999999999999999999875433 34667788899999988665555
Q ss_pred HHHHh
Q 001079 644 CVRLL 648 (1162)
Q Consensus 644 ~l~LL 648 (1162)
.-+.+
T Consensus 95 ~~~al 99 (126)
T 3upv_A 95 LDAAR 99 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 37
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=84.99 E-value=4 Score=36.99 Aligned_cols=61 Identities=15% Similarity=0.062 Sum_probs=46.8
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLL 648 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LL 648 (1162)
.+...||..|+..|+|++|..+|..++...... ...+..++.|+..+++.++=+...-+.+
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY------SVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467899999999999999999999999876543 2345678899999998866444443333
No 38
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=84.25 E-value=2.8 Score=37.63 Aligned_cols=61 Identities=13% Similarity=0.078 Sum_probs=47.2
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLL 648 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LL 648 (1162)
.+...+|..|+..|+|++|..+|..++....... .....++.|+..+++.++-+...-+.+
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYV------GTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3467899999999999999999999998765532 256678899999999876555544433
No 39
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=84.25 E-value=6 Score=38.30 Aligned_cols=98 Identities=13% Similarity=0.040 Sum_probs=65.6
Q ss_pred hHHHHhhcCHHHHHHHHHH---------HHHHHHHHHHhcCCc-chhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhc
Q 001079 544 PNLLKSLSSVEEFEQKYLE---------LTKGAANNYHCSWWK-RHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSG 613 (1162)
Q Consensus 544 ~~L~~ALsS~e~F~~~Yl~---------Lt~~Ai~~Yk~a~R~-Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~ 613 (1162)
..++.|+.+.......+.. -.++|+..|+++=+. ..-..+...+|..|+..|+|++|...|..++.....
T Consensus 18 ~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 97 (150)
T 4ga2_A 18 ASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT 97 (150)
T ss_dssp HHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC
Confidence 4555666655544433322 246788888876311 122345788999999999999999999999986543
Q ss_pred CCcchHHHHHHHHHHHHHHHhccchh----HHHHHHHH
Q 001079 614 EGWQDLLAEVLPNLAECQKILNDEAG----YLLSCVRL 647 (1162)
Q Consensus 614 egW~~L~~~~L~~~a~Clk~L~~~~d----Yv~~~l~L 647 (1162)
. ...+..++.|+.++++.++ |++.++++
T Consensus 98 ~------~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 98 Q------KDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp C------HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred C------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 3 3456678888888887644 45555543
No 40
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=84.19 E-value=3.1 Score=36.79 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=52.1
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhccCC
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLDK 652 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs~~~ 652 (1162)
....+|..++..|+|++|..+|..++...... ...+..++.|+.++++.++=+..+-+.+...+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQN------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 35689999999999999999999999876554 35567889999999999887777776675443
No 41
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=84.10 E-value=4 Score=36.66 Aligned_cols=62 Identities=19% Similarity=0.163 Sum_probs=48.2
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
.+...+|..|+..|+|++|..+|..++...... ...+..++.|+..+++.++-+...-+.+.
T Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 47 VYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY------SKAYGRMGLALSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 457889999999999999999999999875543 34567788899888888765555544443
No 42
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=84.06 E-value=3.9 Score=37.10 Aligned_cols=62 Identities=18% Similarity=0.051 Sum_probs=48.1
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
.+...+|..|+..|+|++|..+|..++..+... ...+..++.|+.++++.++-+...-+.+.
T Consensus 51 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 51 KLYSNRAACYTKLLEFQLALKDCEECIQLEPTF------IKGYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 557889999999999999999999999876543 34566788899888888765555544443
No 43
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=83.97 E-value=3.4 Score=43.62 Aligned_cols=77 Identities=18% Similarity=0.057 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcC--CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcC--CcchHHHHHHHHHHHHHHHhccch
Q 001079 563 LTKGAANNYHCSW--WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGE--GWQDLLAEVLPNLAECQKILNDEA 638 (1162)
Q Consensus 563 Lt~~Ai~~Yk~a~--R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~e--gW~~L~~~~L~~~a~Clk~L~~~~ 638 (1162)
+.+++++.+...+ .......+...+|..|+..|+|++|..+|..++..+... +.......++..++.|+..+++.+
T Consensus 49 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 128 (311)
T 3nf1_A 49 LCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK 128 (311)
T ss_dssp HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHH
Confidence 4444555544443 233334567889999999999999999999999988665 445555677788888888877764
Q ss_pred h
Q 001079 639 G 639 (1162)
Q Consensus 639 d 639 (1162)
+
T Consensus 129 ~ 129 (311)
T 3nf1_A 129 E 129 (311)
T ss_dssp H
T ss_pred H
Confidence 3
No 44
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=83.95 E-value=4.9 Score=42.15 Aligned_cols=66 Identities=21% Similarity=0.227 Sum_probs=50.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHh----------ccchhHHHHHHHHhccCC
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKIL----------NDEAGYLLSCVRLLSLDK 652 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L----------~~~~dYv~~~l~LLs~~~ 652 (1162)
...+|..|+.+|+|++|...|..++..|....+. ...+..++.|+..+ ++.++-+...-+++..++
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWA---DDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTH---HHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchH---HHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 4789999999999999999999999998876553 46677888888877 444555555555555443
No 45
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=83.92 E-value=3.4 Score=41.53 Aligned_cols=86 Identities=17% Similarity=0.102 Sum_probs=60.6
Q ss_pred HHHHHHHHhcCC-cchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCC----------cchHHHHHHHHHHHHHHH
Q 001079 565 KGAANNYHCSWW-KRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEG----------WQDLLAEVLPNLAECQKI 633 (1162)
Q Consensus 565 ~~Ai~~Yk~a~R-~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~eg----------W~~L~~~~L~~~a~Clk~ 633 (1162)
+.|+..|..+-+ ......+...+|..|+..|+|++|..+|..++....... ...-....+..++.|+.+
T Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 133 (213)
T 1hh8_A 54 TEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK 133 (213)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH
Confidence 344555554421 112224578899999999999999999999999776655 333345778889999999
Q ss_pred hccchhHHHHHHHHhcc
Q 001079 634 LNDEAGYLLSCVRLLSL 650 (1162)
Q Consensus 634 L~~~~dYv~~~l~LLs~ 650 (1162)
+++.++-+...-+.+..
T Consensus 134 ~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 134 KEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 99987766666555543
No 46
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=83.63 E-value=6.1 Score=37.16 Aligned_cols=81 Identities=15% Similarity=0.068 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcC-CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHH
Q 001079 564 TKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1162)
Q Consensus 564 t~~Ai~~Yk~a~-R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~ 642 (1162)
.+.|+..|..+= ....-..+...+|..|+++|+|++|...|..++..-... ...+..++.|+..+++.++=+.
T Consensus 29 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~~~~~~A~~ 102 (126)
T 4gco_A 29 YPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF------IKGYIRKAACLVAMREWSKAQR 102 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh------hHHHHHHHHHHHHCCCHHHHHH
Confidence 456677776653 111222457889999999999999999999999863332 2456678889999998876665
Q ss_pred HHHHHhcc
Q 001079 643 SCVRLLSL 650 (1162)
Q Consensus 643 ~~l~LLs~ 650 (1162)
..-+.+..
T Consensus 103 ~~~~al~l 110 (126)
T 4gco_A 103 AYEDALQV 110 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 47
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=83.35 E-value=4.5 Score=35.90 Aligned_cols=62 Identities=23% Similarity=0.239 Sum_probs=46.8
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
.+...+|..|+..|+|++|..+|..++...... ...+..++.|+..+++.++-+...-+.+.
T Consensus 44 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 456789999999999999999999999865443 34556778888888887665555544443
No 48
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=83.00 E-value=4.8 Score=41.61 Aligned_cols=85 Identities=15% Similarity=0.047 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhc--CCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCc--chHHHHHHHHHHHHHHHhccch
Q 001079 563 LTKGAANNYHCS--WWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGW--QDLLAEVLPNLAECQKILNDEA 638 (1162)
Q Consensus 563 Lt~~Ai~~Yk~a--~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW--~~L~~~~L~~~a~Clk~L~~~~ 638 (1162)
..++|++.+... +.......+...||..|+.+|+|++|..+|..++..+...+- +.....++..++.|+..+++.+
T Consensus 65 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 144 (283)
T 3edt_B 65 LLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE 144 (283)
T ss_dssp HHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence 334444444443 222333456889999999999999999999999998765422 2344667788888988888875
Q ss_pred h---HHHHHHHH
Q 001079 639 G---YLLSCVRL 647 (1162)
Q Consensus 639 d---Yv~~~l~L 647 (1162)
+ |+..++++
T Consensus 145 ~A~~~~~~al~~ 156 (283)
T 3edt_B 145 EVEYYYRRALEI 156 (283)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 4 44444444
No 49
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=82.81 E-value=3.5 Score=38.12 Aligned_cols=61 Identities=16% Similarity=0.097 Sum_probs=47.8
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLL 648 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LL 648 (1162)
.+...+|..|+.+|+|++|..+|..++...... ...+..++.|+..+++.++-+...-+.+
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 44 VYYTNRALCYLKMQQPEQALADCRRALELDGQS------VKAHFFLGQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh------HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 457889999999999999999999999876542 3466778889999988866555554444
No 50
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=81.70 E-value=6.8 Score=37.14 Aligned_cols=79 Identities=19% Similarity=0.087 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcCC-cchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHH
Q 001079 564 TKGAANNYHCSWW-KRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1162)
Q Consensus 564 t~~Ai~~Yk~a~R-~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~ 642 (1162)
.+.|+..|..+-+ ......+...+|..|++.|+|++|...|..++......- ..+..++.|+..+++.++=+.
T Consensus 34 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~ 107 (142)
T 2xcb_A 34 WDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP------RFPFHAAECHLQLGDLDGAES 107 (142)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT------HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc------HHHHHHHHHHHHcCCHHHHHH
Confidence 3556666665421 111224467899999999999999999999998765442 234578889999999866444
Q ss_pred HHHHHh
Q 001079 643 SCVRLL 648 (1162)
Q Consensus 643 ~~l~LL 648 (1162)
..-+.+
T Consensus 108 ~~~~al 113 (142)
T 2xcb_A 108 GFYSAR 113 (142)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 443333
No 51
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=81.57 E-value=3.8 Score=38.67 Aligned_cols=60 Identities=22% Similarity=0.308 Sum_probs=46.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
..+.|..||+.|+|++|..+|..++...... ..++..++.|+.++++.++=+..+-+.+.
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 75 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN------AILYSNRAACLTKLMEFQRALDDCDTCIR 75 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHhhHHHhhccHHHHHHHHHHHHH
Confidence 4578999999999999999999999865433 34666788899999988766665555554
No 52
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=81.06 E-value=6.7 Score=37.90 Aligned_cols=62 Identities=13% Similarity=0.008 Sum_probs=48.9
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
.+...+|..|+++|+|++|..+|..++..-.. + ...+..++.|+..+++.++=+...-+.+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~--~----~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREET--N----EKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc--c----hHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 45788999999999999999999999987432 2 34677889999999998776655555554
No 53
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=80.39 E-value=3.7 Score=42.41 Aligned_cols=62 Identities=11% Similarity=0.082 Sum_probs=51.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 585 GEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 585 ~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
..+|.+|+.+|+|.+|...|..++..|.+..+ ....+..++.|+.++++.++-+...-+++.
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDTQA---TRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCc---cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 57899999999999999999999999987643 346788899999999999887776654544
No 54
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=80.14 E-value=5.2 Score=39.43 Aligned_cols=80 Identities=16% Similarity=0.042 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcCCc-chhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHH
Q 001079 564 TKGAANNYHCSWWK-RHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1162)
Q Consensus 564 t~~Ai~~Yk~a~R~-Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~ 642 (1162)
.+.|+..|..+=+. -.-......+|..|+.+|+|++|...|..++....... ..+..++.|+.++++.++=+.
T Consensus 52 ~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~------~~~~~lg~~~~~lg~~~eA~~ 125 (151)
T 3gyz_A 52 IEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY------TPVFHTGQCQLRLKAPLKAKE 125 (151)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC------HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc------HHHHHHHHHHHHcCCHHHHHH
Confidence 45666767665311 11123467899999999999999999999998766543 345678899999999977666
Q ss_pred HHHHHhc
Q 001079 643 SCVRLLS 649 (1162)
Q Consensus 643 ~~l~LLs 649 (1162)
..-+.+.
T Consensus 126 ~~~~al~ 132 (151)
T 3gyz_A 126 CFELVIQ 132 (151)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 55
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=79.97 E-value=8.5 Score=42.48 Aligned_cols=77 Identities=10% Similarity=-0.059 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcc--hHHHHHHHHHHHHHHHhccchh
Q 001079 563 LTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQ--DLLAEVLPNLAECQKILNDEAG 639 (1162)
Q Consensus 563 Lt~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~--~L~~~~L~~~a~Clk~L~~~~d 639 (1162)
+..+|++.+...+...........+|..|+.+|+|++|..+|..++..+...+.. ......+..++.++..+++.++
T Consensus 75 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 153 (373)
T 1hz4_A 75 LMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 153 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHH
Confidence 4556666666666444444557889999999999999999999999999876654 4455666777888888777754
No 56
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=79.86 E-value=4.8 Score=36.74 Aligned_cols=63 Identities=21% Similarity=0.187 Sum_probs=49.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
...+|..++..|+|++|..+|..++..+....+. ...+..++.|+.++++.++=+...-+++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYT---PNALYWLGESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCccc---HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678999999999999999999999988776554 35666788899888888765555555554
No 57
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=79.60 E-value=6.2 Score=42.46 Aligned_cols=84 Identities=8% Similarity=0.035 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcC-------CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCC-cchHHHHHHHHHHHHHHHhc
Q 001079 564 TKGAANNYHCSW-------WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEG-WQDLLAEVLPNLAECQKILN 635 (1162)
Q Consensus 564 t~~Ai~~Yk~a~-------R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~eg-W~~L~~~~L~~~a~Clk~L~ 635 (1162)
.+.|+..|..+= -......+...||..|+..|+|++|..+|..++..+...+ ...+...++..++.|+.+++
T Consensus 131 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~ 210 (293)
T 2qfc_A 131 YEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS 210 (293)
T ss_dssp HHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHh
Confidence 346666666541 1112234577899999999999999999999998876654 33334478889999999888
Q ss_pred cchh---HHHHHHHH
Q 001079 636 DEAG---YLLSCVRL 647 (1162)
Q Consensus 636 ~~~d---Yv~~~l~L 647 (1162)
+.++ |...++++
T Consensus 211 ~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 211 RYEESLYQVNKAIEI 225 (293)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 8754 44444443
No 58
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=79.50 E-value=6.4 Score=37.31 Aligned_cols=62 Identities=11% Similarity=0.033 Sum_probs=46.9
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
.+...+|..|++.|+|++|..+|..++..+... ...+..++.|+..+++.++-+...-+.+.
T Consensus 48 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 48 IYYGNRSLAYLRTECYGYALGDATRAIELDKKY------IKGYYRRAASNMALGKFRAALRDYETVVK 109 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 456789999999999999999999999876543 34566778888888887765555544443
No 59
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=79.38 E-value=6.8 Score=33.13 Aligned_cols=61 Identities=23% Similarity=0.254 Sum_probs=45.8
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
....+|..|+..|+|++|..+|..++...... ...+..++.|+.++++.++=+...-+.+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45678999999999999999999999865443 34566788888888887665555544443
No 60
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=78.93 E-value=5.4 Score=36.64 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=47.8
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
..++|..++..|+|++|..+|..++...... ..++..++.|+.++++.++=+..+-+.+.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIADCNKAIE 66 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5789999999999999999999999876554 35677888899998888766655555444
No 61
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=78.74 E-value=7.3 Score=34.77 Aligned_cols=57 Identities=23% Similarity=0.223 Sum_probs=37.8
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHH
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSC 644 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~ 644 (1162)
.+...+|..|+..|+|++|..+|..+....... ..++..++.|+.++++.++-+...
T Consensus 70 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 70 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHHccHHHHHHHH
Confidence 345678888888888888888888888765432 234455667776666655444333
No 62
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=78.68 E-value=13 Score=38.93 Aligned_cols=84 Identities=13% Similarity=0.122 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcC----CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHH------
Q 001079 564 TKGAANNYHCSW----WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKI------ 633 (1162)
Q Consensus 564 t~~Ai~~Yk~a~----R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~------ 633 (1162)
.+.|+..|..+- ....+..+...+|..|++.|+|++|..+|..++..|..+... ...+..++.|+..
T Consensus 31 ~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~a~~~lg~~~~~~~~~~~ 107 (261)
T 3qky_A 31 YDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV---PQAEYERAMCYYKLSPPYE 107 (261)
T ss_dssp HHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH---HHHHHHHHHHHHHHCCCTT
T ss_pred HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh---HHHHHHHHHHHHHhccccc
Confidence 455666666653 122334567899999999999999999999999998766543 3566677888877
Q ss_pred --hccchhHHHHHHHHhcc
Q 001079 634 --LNDEAGYLLSCVRLLSL 650 (1162)
Q Consensus 634 --L~~~~dYv~~~l~LLs~ 650 (1162)
+++.++=+...-+++..
T Consensus 108 ~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 108 LDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp SCCHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHH
Confidence 66666555555445543
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=77.96 E-value=5.2 Score=39.23 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHH
Q 001079 585 GEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSC 644 (1162)
Q Consensus 585 ~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~ 644 (1162)
..||..|+.+|+|++|..+|..++...... ...+..++.|+.++++.++-+...
T Consensus 9 ~~lG~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~a~~~~ 62 (184)
T 3vtx_A 9 MDIGDKKRTKGDFDGAIRAYKKVLKADPNN------VETLLKLGKTYMDIGLPNDAIESL 62 (184)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 345555555555555555555555443221 223444455555555544433333
No 64
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=77.64 E-value=6.5 Score=33.27 Aligned_cols=47 Identities=26% Similarity=0.367 Sum_probs=34.7
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHh
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKIL 634 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L 634 (1162)
.+...+|..|+..|+|++|..+|..++...... ...+..++.++..+
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAKQNLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhc
Confidence 457789999999999999999999999865433 23444555555443
No 65
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=77.43 E-value=7.5 Score=39.62 Aligned_cols=86 Identities=9% Similarity=-0.097 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcC-CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCC-cchHHHHHHHHHHHHHHHhccchhHH
Q 001079 564 TKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEG-WQDLLAEVLPNLAECQKILNDEAGYL 641 (1162)
Q Consensus 564 t~~Ai~~Yk~a~-R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~eg-W~~L~~~~L~~~a~Clk~L~~~~dYv 641 (1162)
.+.|+..|..+- .......+...+|..|+.+|+|++|..+|..++..+.... +......++..++.|+..+++.++=+
T Consensus 58 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 137 (228)
T 4i17_A 58 YKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAE 137 (228)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHH
Confidence 345666666653 1222334577899999999999999999999998877654 22233456667777887777776666
Q ss_pred HHHHHHhc
Q 001079 642 LSCVRLLS 649 (1162)
Q Consensus 642 ~~~l~LLs 649 (1162)
...-+.+.
T Consensus 138 ~~~~~al~ 145 (228)
T 4i17_A 138 ENYKHATD 145 (228)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 66655554
No 66
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=75.90 E-value=6.3 Score=39.51 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhhcCC-cchH---------HHHHHHHHHHHHHHhccchhHHHHH
Q 001079 585 GEIAAVCFKHGNYDQAAKSYEKVCALYSGEG-WQDL---------LAEVLPNLAECQKILNDEAGYLLSC 644 (1162)
Q Consensus 585 ~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~eg-W~~L---------~~~~L~~~a~Clk~L~~~~dYv~~~ 644 (1162)
.++|..++..|+|++|..+|..++..+.... |... ...++..++.|+.++++.++=+..+
T Consensus 42 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 111 (198)
T 2fbn_A 42 KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA 111 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 3455666666666666666666665544332 1111 1245555566666655554433333
No 67
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.84 E-value=16 Score=40.88 Aligned_cols=76 Identities=9% Similarity=-0.003 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccch
Q 001079 563 LTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEA 638 (1162)
Q Consensus 563 Lt~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~ 638 (1162)
+...++..+...++..--..+...||.+|+.+|+|++|..++..+.......+=......++....+++..+++.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (434)
T 4b4t_Q 117 VCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLA 192 (434)
T ss_dssp HHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHH
Confidence 4455666666666555445678899999999999999999999999877665544445566677777777777653
No 68
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=75.64 E-value=12 Score=36.00 Aligned_cols=79 Identities=16% Similarity=0.032 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCC-cchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHH
Q 001079 564 TKGAANNYHCSWW-KRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1162)
Q Consensus 564 t~~Ai~~Yk~a~R-~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~ 642 (1162)
.+.|+..|..+-. .-....+...+|..|+..|+|++|...|..++......- ..+..++.|+..+++.++=+.
T Consensus 37 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~------~~~~~lg~~~~~~g~~~~A~~ 110 (148)
T 2vgx_A 37 YEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP------RFPFHAAECLLQXGELAEAES 110 (148)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT------HHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc------hHHHHHHHHHHHcCCHHHHHH
Confidence 3566666666421 111123456899999999999999999999998755432 345677889999999876444
Q ss_pred HHHHHh
Q 001079 643 SCVRLL 648 (1162)
Q Consensus 643 ~~l~LL 648 (1162)
..-+.+
T Consensus 111 ~~~~al 116 (148)
T 2vgx_A 111 GLFLAQ 116 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 443333
No 69
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=75.60 E-value=12 Score=37.36 Aligned_cols=77 Identities=12% Similarity=-0.077 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHH
Q 001079 564 TKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLS 643 (1162)
Q Consensus 564 t~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~ 643 (1162)
.+.|+..|..+-.. ...+...+|..|+.+|+|++|..+|..++...... ...+..++.|+..+++.++=+..
T Consensus 22 ~~~A~~~~~~a~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~lg~~~~~~~~~~~A~~~ 93 (213)
T 1hh8_A 22 WKGALDAFSAVQDP--HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL------AVAYFQRGMLYYQTEKYDLAIKD 93 (213)
T ss_dssp HHHHHHHHHTSSSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHcccHHHHHHH
Confidence 45677777776422 22468899999999999999999999999875432 34566778888888887654444
Q ss_pred HHHHh
Q 001079 644 CVRLL 648 (1162)
Q Consensus 644 ~l~LL 648 (1162)
.-+.+
T Consensus 94 ~~~al 98 (213)
T 1hh8_A 94 LKEAL 98 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 43333
No 70
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=75.13 E-value=8.7 Score=35.33 Aligned_cols=61 Identities=23% Similarity=0.183 Sum_probs=47.0
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLL 648 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LL 648 (1162)
.....+|..++..|+|++|..+|..++...... ..++..++.|+..+++.++=+...-+.+
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al 70 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRAL 70 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc------HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 346889999999999999999999999876553 3567778888888888765444444443
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=75.09 E-value=10 Score=36.08 Aligned_cols=52 Identities=15% Similarity=0.175 Sum_probs=34.6
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchh
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 639 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~d 639 (1162)
.+...+|..|+..|+|++|..+|..+....... ...+..++.|+.++++.++
T Consensus 111 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 111 NVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE------GKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc------hHHHHHHHHHHHHcCCHHH
Confidence 345677888888888888888888877765333 2445566666666665543
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=75.06 E-value=10 Score=37.13 Aligned_cols=62 Identities=15% Similarity=0.068 Sum_probs=47.9
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
.+...+|..|++.|+|++|...|..++...... ...+..++.|+.++++.++=+...-+.|.
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 108 DAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF------IRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh------hhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 446789999999999999999999999875433 34566788899999988776665554443
No 73
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=75.05 E-value=7.6 Score=41.21 Aligned_cols=61 Identities=16% Similarity=0.106 Sum_probs=48.5
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhc------CCcchHHHHHHHHHHHHHHHhccchhHHH
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSG------EGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~------egW~~L~~~~L~~~a~Clk~L~~~~dYv~ 642 (1162)
.+...+|..|+..|+|++|..+|..++..... ++|......++..++.|+.++++.++=..
T Consensus 241 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 307 (327)
T 3cv0_A 241 RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVEL 307 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence 45678999999999999999999999988776 45555567888889999988888755433
No 74
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=74.62 E-value=9.7 Score=38.77 Aligned_cols=67 Identities=12% Similarity=0.126 Sum_probs=51.6
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcch-HHHHHHHHHHHHHHHhccchhHHHHHHHHh
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQD-LLAEVLPNLAECQKILNDEAGYLLSCVRLL 648 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~-L~~~~L~~~a~Clk~L~~~~dYv~~~l~LL 648 (1162)
.+...+|..|++.|+|++|..+|..++......+-.. ....++..++.|+..+++.++-+...-+.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 106 (258)
T 3uq3_A 39 TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL 106 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4578899999999999999999999999887764222 235778888999999988866555444444
No 75
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=74.61 E-value=8.3 Score=37.29 Aligned_cols=61 Identities=10% Similarity=0.006 Sum_probs=47.5
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLL 648 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LL 648 (1162)
.....+|..|++.|+|++|..+|..++...... ..++..++.|+.++++.++=+..+-+.+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al 72 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN------PIYLSNRAAAYSASGQHEKAAEDAELAT 72 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 346789999999999999999999999877553 4567778888888888765555444444
No 76
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=74.11 E-value=16 Score=36.51 Aligned_cols=62 Identities=15% Similarity=0.063 Sum_probs=48.6
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
.+...+|..|+..|+|++|..+|..++...... ...+..++.|+..+++.++-+...-+.+.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN------VKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 457889999999999999999999999875433 35667888999999998765555544443
No 77
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=73.93 E-value=5 Score=38.87 Aligned_cols=68 Identities=13% Similarity=0.198 Sum_probs=51.3
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhhhc---------CCc---chHHHHHHHHHHHHHHHhccchhHHHHHHHHhcc
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSG---------EGW---QDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSL 650 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~---------egW---~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs~ 650 (1162)
...++|..+|..|+|++|..+|..++..+.. +.| ......++..++.|+.++++.++=+..+-+.+..
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3678999999999999999999999987432 112 2233567888999999999987766666555543
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=73.21 E-value=9.3 Score=38.91 Aligned_cols=79 Identities=11% Similarity=0.073 Sum_probs=54.7
Q ss_pred HHHHHHHHhcCCc---chhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHH
Q 001079 565 KGAANNYHCSWWK---RHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYL 641 (1162)
Q Consensus 565 ~~Ai~~Yk~a~R~---Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv 641 (1162)
+.|+..|..+-+. ... .+...+|..|++.|+|++|..+|..++..... ...++..++.|+..+++.++-+
T Consensus 24 ~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~ 96 (228)
T 4i17_A 24 AVAFEKYSEYLKLTNNQDS-VTAYNCGVCADNIKKYKEAADYFDIAIKKNYN------LANAYIGKSAAYRDMKNNQEYI 96 (228)
T ss_dssp HHHHHHHHHHHHHTTTCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS------HHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCCCCc-HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc------hHHHHHHHHHHHHHcccHHHHH
Confidence 4555555554211 122 34555999999999999999999999975443 2456777888999988887766
Q ss_pred HHHHHHhcc
Q 001079 642 LSCVRLLSL 650 (1162)
Q Consensus 642 ~~~l~LLs~ 650 (1162)
...-+.+..
T Consensus 97 ~~~~~al~~ 105 (228)
T 4i17_A 97 ATLTEGIKA 105 (228)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555543
No 79
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=73.19 E-value=9.7 Score=34.05 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=43.7
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVR 646 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~ 646 (1162)
....+|..|+..|+|++|..+|..++...... ..++..++.|+..+++.++-+..+-+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~ 63 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTN------MTYITNQAAVYFEKGDYNKCRELCEK 63 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 35789999999999999999999999876443 34566778888887777554444333
No 80
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=73.11 E-value=11 Score=34.91 Aligned_cols=79 Identities=13% Similarity=-0.031 Sum_probs=54.3
Q ss_pred HHHHHHHHhcC-CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHH
Q 001079 565 KGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLS 643 (1162)
Q Consensus 565 ~~Ai~~Yk~a~-R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~ 643 (1162)
+.|+..|..+= .......+...+|..|+..|+|++|...|..++...... ...+..++.|+..+++.++-+..
T Consensus 34 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~la~~~~~~g~~~~A~~~ 107 (121)
T 1hxi_A 34 AEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD------IAVHAALAVSHTNEHNANAALAS 107 (121)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 34555555542 111122446789999999999999999999999875543 23556788888888888776666
Q ss_pred HHHHhc
Q 001079 644 CVRLLS 649 (1162)
Q Consensus 644 ~l~LLs 649 (1162)
.-+.+.
T Consensus 108 ~~~al~ 113 (121)
T 1hxi_A 108 LRAWLL 113 (121)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 655554
No 81
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=72.62 E-value=7.1 Score=34.05 Aligned_cols=61 Identities=13% Similarity=0.041 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhcc
Q 001079 585 GEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSL 650 (1162)
Q Consensus 585 ~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs~ 650 (1162)
.+.|..++..|+|++|..+|..++.......+ ..+..++.|+..+++.++=+...-+.+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKD-----EAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHH-----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 56788999999999999999999987655422 25667888888888887655555555543
No 82
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=72.61 E-value=9.7 Score=33.07 Aligned_cols=61 Identities=13% Similarity=0.061 Sum_probs=45.8
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
....+|..|+..|+|++|..+|..++...... ...+..++.|+..+++.++=+...-+.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE------SKYWLMKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 35678999999999999999999999876543 23556778888888887665555444443
No 83
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=72.38 E-value=11 Score=32.97 Aligned_cols=61 Identities=15% Similarity=0.081 Sum_probs=46.6
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
....+|..++..|+|++|..+|..++...... ...+..++.|+..+++.++-+...-+.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 66 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKKGDYQKAYEDGCKTVD 66 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 36788999999999999999999999876544 34666778888888887665555544443
No 84
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=71.61 E-value=14 Score=32.76 Aligned_cols=60 Identities=22% Similarity=0.212 Sum_probs=42.9
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRL 647 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~L 647 (1162)
.....+|..|+..|++++|..+|..+....... ...+..++.|+..+++.++=+...-+.
T Consensus 36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~ 95 (136)
T 2fo7_A 36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEYYQKA 95 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc------hHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 346678999999999999999999998875443 234456677777777765544444333
No 85
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=71.48 E-value=6.5 Score=35.56 Aligned_cols=61 Identities=25% Similarity=0.394 Sum_probs=45.7
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLL 648 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LL 648 (1162)
.....+|..++..|+|++|..+|..++...... ..++..++.|+..+++.++=+..+-+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~ 77 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKLLEFQLALKDCEECI 77 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC------HHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 446789999999999999999999999876543 4566777888877777765444444433
No 86
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=70.38 E-value=14 Score=32.87 Aligned_cols=61 Identities=23% Similarity=0.207 Sum_probs=45.4
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLL 648 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LL 648 (1162)
.....+|..++..|+|++|..+|..++...... ..++..++.|+..+++.++=+...-+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 73 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN------AVYFCNRAAAYSKLGNYAGAVQDCERAI 73 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 346789999999999999999999999876543 3456677888888777765444444433
No 87
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=70.38 E-value=9.6 Score=44.42 Aligned_cols=91 Identities=14% Similarity=0.150 Sum_probs=65.0
Q ss_pred hHHHHhhcCHHHHHHHHHHHHHHHHHHHHhc-C-CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcC-C-cchH
Q 001079 544 PNLLKSLSSVEEFEQKYLELTKGAANNYHCS-W-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGE-G-WQDL 619 (1162)
Q Consensus 544 ~~L~~ALsS~e~F~~~Yl~Lt~~Ai~~Yk~a-~-R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~e-g-W~~L 619 (1162)
..|-.++.+...|.+. +.+..+++..|.+. | -+.........||.+|..+|+|++|..+|..++.-+... | -+..
T Consensus 333 ~~L~~~y~~~g~~~eA-~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~ 411 (429)
T 3qwp_A 333 DCAMDACINLGLLEEA-LFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSL 411 (429)
T ss_dssp HHHHHHHHHHTCHHHH-HHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH
T ss_pred HHHHHHHHhhccHHHH-HHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 3444455555555433 55788888888875 4 455555668899999999999999999999999865532 3 2334
Q ss_pred HHHHHHHHHHHHHHhc
Q 001079 620 LAEVLPNLAECQKILN 635 (1162)
Q Consensus 620 ~~~~L~~~a~Clk~L~ 635 (1162)
...++.++.+|..+|+
T Consensus 412 ~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 412 IEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4567788999987664
No 88
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=70.04 E-value=12 Score=37.88 Aligned_cols=62 Identities=13% Similarity=0.080 Sum_probs=46.3
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
.+...+|..|+..|+|++|..+|..++...... ..++..++.|+.++++.++-+...-+++.
T Consensus 160 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 160 EARFQFGMCLANEGMLDEALSQFAAVTEQDPGH------ADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 356788999999999999999999998875432 34667888888888887665555444443
No 89
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=69.78 E-value=11 Score=38.37 Aligned_cols=88 Identities=16% Similarity=0.022 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHhcCC---cchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhc----C---------------C
Q 001079 558 QKYLELTKGAANNYHCSWW---KRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSG----E---------------G 615 (1162)
Q Consensus 558 ~~Yl~Lt~~Ai~~Yk~a~R---~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~----e---------------g 615 (1162)
+.=+-|.+.++..-....- .-..-.+..-+|..+|+.|+|..|..+|..++....- . -
T Consensus 37 ~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~ 116 (167)
T 3ffl_A 37 SNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQ 116 (167)
T ss_dssp HHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------
T ss_pred HHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccc
Confidence 3344566776665544221 1111245788999999999999999999999877662 0 1
Q ss_pred cchHHHHHHHHHHHHHHHhccchhHHHHHH
Q 001079 616 WQDLLAEVLPNLAECQKILNDEAGYLLSCV 645 (1162)
Q Consensus 616 W~~L~~~~L~~~a~Clk~L~~~~dYv~~~l 645 (1162)
|-.-+..+.-..++|+.++++.++-|.+..
T Consensus 117 ~~~~e~Elkykia~C~~~l~~~~~Ai~~Le 146 (167)
T 3ffl_A 117 CLPSEIEVKYKLAECYTVLKQDKDAIAILD 146 (167)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 334456788889999999999998887653
No 90
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=69.72 E-value=22 Score=39.07 Aligned_cols=84 Identities=17% Similarity=0.034 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcCCc--chhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchh-
Q 001079 563 LTKGAANNYHCSWWK--RHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG- 639 (1162)
Q Consensus 563 Lt~~Ai~~Yk~a~R~--Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~d- 639 (1162)
+.+++++.+...+.. .....+...+|..|+.+|+|++|..+|...+......+... ....+..++.++...++.++
T Consensus 115 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A 193 (373)
T 1hz4_A 115 TQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNA 193 (373)
T ss_dssp HHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHH
Confidence 444555555554422 23334567799999999999999999999998888777554 33566677777777777644
Q ss_pred --HHHHHHHH
Q 001079 640 --YLLSCVRL 647 (1162)
Q Consensus 640 --Yv~~~l~L 647 (1162)
++..++++
T Consensus 194 ~~~l~~a~~~ 203 (373)
T 1hz4_A 194 RSQLNRLENL 203 (373)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 44444444
No 91
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=69.72 E-value=18 Score=42.19 Aligned_cols=63 Identities=19% Similarity=0.165 Sum_probs=50.3
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhcc
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSL 650 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs~ 650 (1162)
.+...+|..|+++|+|++|..+|..++...... ...+..++.|+.++++.++=+...-+.+..
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSAN------EKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 557899999999999999999999999876543 356778889999999987766665555543
No 92
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=69.59 E-value=20 Score=33.93 Aligned_cols=79 Identities=15% Similarity=-0.011 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcCCc-chhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHH
Q 001079 564 TKGAANNYHCSWWK-RHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1162)
Q Consensus 564 t~~Ai~~Yk~a~R~-Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~ 642 (1162)
.+.|+..|..+-.. .....+...+|..|+..|+|++|..+|..+....... ..++..++.|+.++++.++-+.
T Consensus 58 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~ 131 (186)
T 3as5_A 58 VDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN------FNVRFRLGVALDNLGRFDEAID 131 (186)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh------HHHHHHHHHHHHHcCcHHHHHH
Confidence 34455555554211 1112345667777777777777777777777664432 2445566777777777655444
Q ss_pred HHHHHh
Q 001079 643 SCVRLL 648 (1162)
Q Consensus 643 ~~l~LL 648 (1162)
..-+.+
T Consensus 132 ~~~~~~ 137 (186)
T 3as5_A 132 SFKIAL 137 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 93
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=69.38 E-value=6.6 Score=34.25 Aligned_cols=50 Identities=12% Similarity=0.020 Sum_probs=35.7
Q ss_pred HHHHHHHHhcC--CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcC
Q 001079 565 KGAANNYHCSW--WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGE 614 (1162)
Q Consensus 565 ~~Ai~~Yk~a~--R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~e 614 (1162)
+.|+..|..+- ....+..+...+|..|+..|+|++|..+|..++......
T Consensus 17 ~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 17 ENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 44555555542 112222267889999999999999999999999876544
No 94
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=69.26 E-value=9.6 Score=45.33 Aligned_cols=93 Identities=10% Similarity=0.005 Sum_probs=65.2
Q ss_pred hHHHHhhcCHHHHHHHHHHHHHHHHHHHHhc-C-CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcC-C-cchH
Q 001079 544 PNLLKSLSSVEEFEQKYLELTKGAANNYHCS-W-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGE-G-WQDL 619 (1162)
Q Consensus 544 ~~L~~ALsS~e~F~~~Yl~Lt~~Ai~~Yk~a-~-R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~e-g-W~~L 619 (1162)
..|-.++.+...|.+ =+.+..+|++.|... | -+.........||.+|+++|+|++|..+|.+++.-+... | .+..
T Consensus 355 ~nLa~~y~~~g~~~e-A~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~ 433 (490)
T 3n71_A 355 SIASEVLSYLQAYEE-ASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPI 433 (490)
T ss_dssp HHHHHHHHHTTCHHH-HHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 444455555555544 345777888888775 4 445555568899999999999999999999999755432 3 3334
Q ss_pred HHHHHHHHHHHHHHhccc
Q 001079 620 LAEVLPNLAECQKILNDE 637 (1162)
Q Consensus 620 ~~~~L~~~a~Clk~L~~~ 637 (1162)
...++.++..|+.+++.-
T Consensus 434 ~~~~~~~l~~~~~e~~~~ 451 (490)
T 3n71_A 434 TKDLEAMRMQTEMELRMF 451 (490)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456778888888776654
No 95
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=68.52 E-value=15 Score=41.65 Aligned_cols=62 Identities=15% Similarity=0.045 Sum_probs=48.6
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
.+...+|..|+++|+|++|..+|..++...... ...+..++.|+..+++.++-+...-+.+.
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN------TKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCchh------HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 457889999999999999999999999865432 45677888999999998765555544444
No 96
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=68.13 E-value=12 Score=41.66 Aligned_cols=61 Identities=20% Similarity=0.132 Sum_probs=47.0
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLL 648 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LL 648 (1162)
.+...+|..|+.+|+|++|..+|..++...... ...+..++.|+..+++.++=+...-+.+
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al 257 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNN------EKGLSRRGEAHLAVNDFELARADFQKVL 257 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 567889999999999999999999999976543 3456778888888888765444443333
No 97
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=68.08 E-value=20 Score=41.80 Aligned_cols=88 Identities=16% Similarity=0.133 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhc-C-CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhc--CCcchHHHHHHHHHHHHHHHhcc
Q 001079 561 LELTKGAANNYHCS-W-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSG--EGWQDLLAEVLPNLAECQKILND 636 (1162)
Q Consensus 561 l~Lt~~Ai~~Yk~a-~-R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~--egW~~L~~~~L~~~a~Clk~L~~ 636 (1162)
+.+.+++++.+... | -+-........||..|..+|+|++|..++..++.-|.. ...+.-.+..+..++.-+...|+
T Consensus 318 ~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~ 397 (433)
T 3qww_A 318 LEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLEN 397 (433)
T ss_dssp HHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccC
Confidence 55677777776664 3 33444455789999999999999999999999987653 22455557778888888888888
Q ss_pred chh---HHHHHHHHh
Q 001079 637 EAG---YLLSCVRLL 648 (1162)
Q Consensus 637 ~~d---Yv~~~l~LL 648 (1162)
.++ +.+-+++++
T Consensus 398 ~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 398 KAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 755 444444444
No 98
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=67.90 E-value=23 Score=36.15 Aligned_cols=51 Identities=16% Similarity=0.111 Sum_probs=26.5
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchh
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 639 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~d 639 (1162)
+...+|..|+..|+|++|..+|..++...... ...+..++.|+..+++.++
T Consensus 143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 143 VFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ------PSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHH
Confidence 34555666666666666666666665544322 2233444555555555443
No 99
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=67.58 E-value=17 Score=36.65 Aligned_cols=28 Identities=18% Similarity=0.080 Sum_probs=13.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALY 611 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y 611 (1162)
...+|..|+..|+|++|..+|..++...
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~ 121 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRAG 121 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 3444555555555555555555544433
No 100
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=67.41 E-value=25 Score=41.73 Aligned_cols=88 Identities=9% Similarity=-0.046 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhc-C-CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhc--CCcchHHHHHHHHHHHHHHHhcc
Q 001079 561 LELTKGAANNYHCS-W-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSG--EGWQDLLAEVLPNLAECQKILND 636 (1162)
Q Consensus 561 l~Lt~~Ai~~Yk~a-~-R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~--egW~~L~~~~L~~~a~Clk~L~~ 636 (1162)
+.+.+++++.+... | .+-........||.+|..+|+|++|..++..++.-|.. ...+.-....+..++.-+...|+
T Consensus 329 ~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~ 408 (490)
T 3n71_A 329 VKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGH 408 (490)
T ss_dssp HHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC
Confidence 55667777766664 3 34445556889999999999999999999999976542 12344446677778887877777
Q ss_pred chh---HHHHHHHHh
Q 001079 637 EAG---YLLSCVRLL 648 (1162)
Q Consensus 637 ~~d---Yv~~~l~LL 648 (1162)
.++ +.+-+++++
T Consensus 409 ~~eA~~~~~~Al~i~ 423 (490)
T 3n71_A 409 IEVGHGMICKAYAIL 423 (490)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 754 444444444
No 101
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=67.39 E-value=9.7 Score=33.95 Aligned_cols=53 Identities=15% Similarity=0.006 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCC-cchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcc
Q 001079 565 KGAANNYHCSWW-KRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQ 617 (1162)
Q Consensus 565 ~~Ai~~Yk~a~R-~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~ 617 (1162)
+.|+..|..+-+ ...-..+...||..|+..|+|++|..+|..++......+-.
T Consensus 24 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 24 SRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence 445555555421 11112356789999999999999999999999876554433
No 102
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=67.36 E-value=13 Score=38.38 Aligned_cols=57 Identities=12% Similarity=-0.024 Sum_probs=37.4
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHH
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSC 644 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~ 644 (1162)
.+...+|..|++.|+|++|..+|..++....... ..+..++.|+..+++.++-+...
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~ 134 (275)
T 1xnf_A 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN------YAHLNRGIALYYGGRDKLAQDDL 134 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT------HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc------HHHHHHHHHHHHhccHHHHHHHH
Confidence 3456778888888888888888888877654432 34556666777777665444433
No 103
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=67.34 E-value=14 Score=34.81 Aligned_cols=58 Identities=21% Similarity=0.059 Sum_probs=44.0
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVR 646 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~ 646 (1162)
....+|..++..|+|++|..+|..++...... ..++..++.|+..+++.++=+...-+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~ 72 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATR 72 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 36789999999999999999999999876543 44566778888887777554444333
No 104
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=67.15 E-value=23 Score=35.89 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=18.2
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHH
Q 001079 222 SLAFMFEMAHLHEDALREYDELEL 245 (1162)
Q Consensus 222 ~LA~~fe~~gL~edAL~~YdEL~~ 245 (1162)
.+|..|...|.+++|+..|++.-.
T Consensus 10 ~~g~~~~~~~~~~~A~~~~~~a~~ 33 (258)
T 3uq3_A 10 AEGNKFYKARQFDEAIEHYNKAWE 33 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 578888888888888887776543
No 105
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=66.93 E-value=12 Score=40.73 Aligned_cols=80 Identities=10% Similarity=0.109 Sum_probs=53.7
Q ss_pred HHHHHHHHhcCC-cchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCC-----cchHHHHHHHHHHHHHHHhccch
Q 001079 565 KGAANNYHCSWW-KRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEG-----WQDLLAEVLPNLAECQKILNDEA 638 (1162)
Q Consensus 565 ~~Ai~~Yk~a~R-~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~eg-----W~~L~~~~L~~~a~Clk~L~~~~ 638 (1162)
+.|+..|..+-+ ......+...+|..|+++|+|++|..+|..++......+ -......+...++.|+..+++.+
T Consensus 268 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 268 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 445555554421 112224567899999999999999999999998776651 11222566778888999999887
Q ss_pred hHHHHH
Q 001079 639 GYLLSC 644 (1162)
Q Consensus 639 dYv~~~ 644 (1162)
+-....
T Consensus 348 ~A~~~~ 353 (368)
T 1fch_A 348 AYGAAD 353 (368)
T ss_dssp GHHHHH
T ss_pred hHHHhH
Confidence 765543
No 106
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=66.72 E-value=19 Score=31.64 Aligned_cols=61 Identities=23% Similarity=0.242 Sum_probs=44.8
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLL 648 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LL 648 (1162)
.....+|..|+..|+|++|..+|..++..+... ..++..++.|+..+++.++=+...-+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345788999999999999999999999875433 2456677888888887765444443333
No 107
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=66.65 E-value=23 Score=35.02 Aligned_cols=52 Identities=12% Similarity=0.112 Sum_probs=31.7
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchh
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 639 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~d 639 (1162)
.+...+|..|+..|+|++|..+|..++...... ...+..++.|+.++++.++
T Consensus 114 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 114 IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF------PPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------chHHHHHHHHHHHcCCHHH
Confidence 345667777777777777777777777654432 2334455566666555543
No 108
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.14 E-value=11 Score=34.73 Aligned_cols=63 Identities=21% Similarity=0.197 Sum_probs=47.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
...+|..++..|+|++|..+|..++..... ......++..++.|+.++++.++-+..+-+.+.
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 93 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALGLDAT---PQDQAVLHRNRAACHLKLEDYDKAETEASKAIE 93 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHTSCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHccc---chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 567889999999999999999999986543 223356777888999888888765555544443
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=65.94 E-value=27 Score=35.79 Aligned_cols=70 Identities=10% Similarity=0.027 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcC----CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhcc
Q 001079 564 TKGAANNYHCSW----WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILND 636 (1162)
Q Consensus 564 t~~Ai~~Yk~a~----R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~ 636 (1162)
.+.|+..|..+- ....+......+|..|+..|+|++|...|..++..|.+.-.. ...+-..+.|+.+++.
T Consensus 20 ~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~---~~a~~~~g~~~~~~~~ 93 (225)
T 2yhc_A 20 WRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI---DYVMYMRGLTNMALDD 93 (225)
T ss_dssp HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH---HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH---HHHHHHHHHHHHhhhh
Confidence 456777777653 223345678888888888888888888888888887765442 3455666777766654
No 110
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=65.58 E-value=11 Score=42.01 Aligned_cols=61 Identities=16% Similarity=0.042 Sum_probs=48.9
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
+...+|..|+++|+|++|..+|..++...... ...+..++.|+..+++.++-+...-+.+.
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN------PKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57789999999999999999999999876533 34667888899999988776666555554
No 111
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=65.54 E-value=29 Score=40.36 Aligned_cols=79 Identities=10% Similarity=0.019 Sum_probs=58.2
Q ss_pred hhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhc--CCcchHHHHHHHHHHHHHHHhccchh---HHHHHHHHhccCCC
Q 001079 579 HGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSG--EGWQDLLAEVLPNLAECQKILNDEAG---YLLSCVRLLSLDKG 653 (1162)
Q Consensus 579 sa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~--egW~~L~~~~L~~~a~Clk~L~~~~d---Yv~~~l~LLs~~~~ 653 (1162)
........||..|..+|+|++|+.++..++.-|.. ...+...+..+..++.-+...++.++ +++-+++++...-|
T Consensus 327 ~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG 406 (429)
T 3qwp_A 327 YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG 406 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Confidence 34455889999999999999999999999987754 23666667788888888888888754 66666666644334
Q ss_pred CCCH
Q 001079 654 LFST 657 (1162)
Q Consensus 654 ~~s~ 657 (1162)
...+
T Consensus 407 ~~Hp 410 (429)
T 3qwp_A 407 REHS 410 (429)
T ss_dssp TTSH
T ss_pred CCCh
Confidence 3334
No 112
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=65.29 E-value=16 Score=38.75 Aligned_cols=85 Identities=19% Similarity=0.149 Sum_probs=55.9
Q ss_pred HHHHHHHHhcC-CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchH---HHHHHHHHHHHHHHhccchhH
Q 001079 565 KGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDL---LAEVLPNLAECQKILNDEAGY 640 (1162)
Q Consensus 565 ~~Ai~~Yk~a~-R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L---~~~~L~~~a~Clk~L~~~~dY 640 (1162)
+.|+..|..+- .......+...+|..|+..|+|++|..+|..++..+...+-..- ...++..++.|+..+++.++-
T Consensus 176 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 176 KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 45555565543 11222355778999999999999999999999998754332211 124666788888888887665
Q ss_pred HHHHHHHhc
Q 001079 641 LLSCVRLLS 649 (1162)
Q Consensus 641 v~~~l~LLs 649 (1162)
+...-+.+.
T Consensus 256 ~~~~~~a~~ 264 (330)
T 3hym_B 256 LDYHRQALV 264 (330)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 554444443
No 113
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=64.67 E-value=45 Score=32.15 Aligned_cols=82 Identities=18% Similarity=0.146 Sum_probs=55.8
Q ss_pred HHHHHHHHHhcCC-cchhHHhhHHHHHH-HHhcCCH--HHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchh
Q 001079 564 TKGAANNYHCSWW-KRHGVVLDGEIAAV-CFKHGNY--DQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 639 (1162)
Q Consensus 564 t~~Ai~~Yk~a~R-~Rsa~~L~~dLA~l-yy~~gdy--~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~d 639 (1162)
.+.|+..|..+-. ...-..+...+|.. |+..|+| ++|..+|..++...... ...+..++.|+..+++.++
T Consensus 60 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~ 133 (177)
T 2e2e_A 60 YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE------ITALMLLASDAFMQANYAQ 133 (177)
T ss_dssp HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcccHHH
Confidence 3456666665421 11112456788888 8899999 99999999999875543 3456678889988888877
Q ss_pred HHHHHHHHhccC
Q 001079 640 YLLSCVRLLSLD 651 (1162)
Q Consensus 640 Yv~~~l~LLs~~ 651 (1162)
=+...-+++...
T Consensus 134 A~~~~~~al~~~ 145 (177)
T 2e2e_A 134 AIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhhC
Confidence 666665555543
No 114
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=64.57 E-value=18 Score=37.01 Aligned_cols=80 Identities=13% Similarity=0.090 Sum_probs=50.6
Q ss_pred HHHHHHHHhcC-CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHH
Q 001079 565 KGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLS 643 (1162)
Q Consensus 565 ~~Ai~~Yk~a~-R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~ 643 (1162)
+.|+..|..+- .......+...+|..|+..|+|++|..+|..++. .+-..-...++..++.|+.++++.++-+..
T Consensus 88 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 88 KLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44555555432 1111234577899999999999999999999987 111112245666778888888877654444
Q ss_pred HHHHh
Q 001079 644 CVRLL 648 (1162)
Q Consensus 644 ~l~LL 648 (1162)
.-+.+
T Consensus 164 ~~~~~ 168 (252)
T 2ho1_A 164 FEKSL 168 (252)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 43333
No 115
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=64.48 E-value=21 Score=36.77 Aligned_cols=61 Identities=15% Similarity=0.014 Sum_probs=45.3
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLL 648 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LL 648 (1162)
.+...+|..|+..|+|++|..+|..++...... ...+..++.|+..+++.++=+...-+.+
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~al 104 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIRPDM------PEVFNYLGIYLTQAGNFDAAYEAFDSVL 104 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 457889999999999999999999999875542 2355667778888777765444444433
No 116
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=63.93 E-value=29 Score=40.66 Aligned_cols=62 Identities=11% Similarity=0.033 Sum_probs=47.4
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
.+...+|..|+++|+|++|..+|..++...... ...+..++.|+..+++.++-+...-+.+.
T Consensus 41 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 102 (477)
T 1wao_1 41 IYYGNRSLAYLRTECYGYALGDATRAIELDKKY------IKGYYRRAASNMALGKFRAALRDYETVVK 102 (477)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 457889999999999999999999999875432 34566788899889888765555444444
No 117
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=63.16 E-value=19 Score=39.39 Aligned_cols=78 Identities=8% Similarity=-0.089 Sum_probs=52.8
Q ss_pred HHHHHHHHhcC-CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHH
Q 001079 565 KGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLS 643 (1162)
Q Consensus 565 ~~Ai~~Yk~a~-R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~ 643 (1162)
+.|+..|..+- .......+...+|..|+++|+|++|..+|..++...... ...+..++.|+..+++.++=+..
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~ 155 (365)
T 4eqf_A 82 PVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN------LKALMALAVSYTNTSHQQDACEA 155 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHccccHHHHHHH
Confidence 44455555442 111123457889999999999999999999999875443 34567788888888887654444
Q ss_pred HHHHh
Q 001079 644 CVRLL 648 (1162)
Q Consensus 644 ~l~LL 648 (1162)
.-+.+
T Consensus 156 ~~~al 160 (365)
T 4eqf_A 156 LKNWI 160 (365)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 43333
No 118
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=62.61 E-value=18 Score=37.36 Aligned_cols=60 Identities=7% Similarity=-0.026 Sum_probs=38.9
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
...+|..|+..|+|++|..+|..++....... .++..++.|+..+++.++-+...-+.+.
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL------DMYGQIGSYFYNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT------HHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 46777777777777777777777777554432 3455667777777776665555544443
No 119
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=62.44 E-value=20 Score=36.29 Aligned_cols=61 Identities=26% Similarity=0.264 Sum_probs=39.7
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
+..++|..|+..|+|++|...|..++...... ...+..++.|+..+++.++=+...-+++.
T Consensus 56 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 56 LATELALAYKKNRNYDKAYLFYKELLQKAPNN------VDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567788888888888888888777765443 24455666777777776655555544444
No 120
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=61.98 E-value=22 Score=38.86 Aligned_cols=74 Identities=12% Similarity=0.085 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCC-cchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHH
Q 001079 565 KGAANNYHCSWW-KRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLS 643 (1162)
Q Consensus 565 ~~Ai~~Yk~a~R-~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~ 643 (1162)
+.|+..|..+-. ......+...+|..|+..|+|++|..+|..++...... ...+..++.|+.++++.++=+..
T Consensus 230 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 230 NRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF------IRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc------hHHHHHHHHHHHHCCCHHHHHHH
Confidence 455555555421 11112457889999999999999999999999875544 45677788899999988654444
Q ss_pred H
Q 001079 644 C 644 (1162)
Q Consensus 644 ~ 644 (1162)
.
T Consensus 304 ~ 304 (365)
T 4eqf_A 304 F 304 (365)
T ss_dssp H
T ss_pred H
Confidence 3
No 121
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=61.95 E-value=43 Score=35.59 Aligned_cols=61 Identities=13% Similarity=0.006 Sum_probs=48.5
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhcc
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSL 650 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs~ 650 (1162)
...+|..|++.|+|++|..+|..++...... ..++..++.|+..+++.++=+...-+.+..
T Consensus 275 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 275 KERICHCFSKDEKPVEAIRICSEVLQMEPDN------VNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5578999999999999999999999875443 346778899999999987766666556643
No 122
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=61.57 E-value=20 Score=32.46 Aligned_cols=71 Identities=23% Similarity=0.213 Sum_probs=47.3
Q ss_pred hHHHHhhcC---HHHHHHHHHHH---------HHHHHHHHHhcC-CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001079 544 PNLLKSLSS---VEEFEQKYLEL---------TKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCAL 610 (1162)
Q Consensus 544 ~~L~~ALsS---~e~F~~~Yl~L---------t~~Ai~~Yk~a~-R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~ 610 (1162)
..++.|+.- .......|..| .+.|+..|.++- .......+...+|..|+.+|+|++|..+|..++..
T Consensus 11 ~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 11 PYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455556655 34444444433 356777777753 11222345778999999999999999999999987
Q ss_pred hhcC
Q 001079 611 YSGE 614 (1162)
Q Consensus 611 Y~~e 614 (1162)
....
T Consensus 91 ~p~~ 94 (117)
T 3k9i_A 91 TSDD 94 (117)
T ss_dssp HCCC
T ss_pred CCCc
Confidence 6554
No 123
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=61.54 E-value=25 Score=35.84 Aligned_cols=81 Identities=19% Similarity=0.055 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcCC-cchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHH
Q 001079 563 LTKGAANNYHCSWW-KRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYL 641 (1162)
Q Consensus 563 Lt~~Ai~~Yk~a~R-~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv 641 (1162)
-.+.|+..|.++-+ ......+...+|..|+..|+|++|...|..++... + . ...+..++.|+..+++.++=+
T Consensus 99 ~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~-~-----~~~~~~la~~~~~~g~~~~A~ 171 (217)
T 2pl2_A 99 YLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-D-T-----PEIRSALAELYLSMGRLDEAL 171 (217)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C-C-----HHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c-c-----hHHHHHHHHHHHHcCCHHHHH
Confidence 44566666666531 11222456789999999999999999999999876 2 1 345567888999999987766
Q ss_pred HHHHHHhcc
Q 001079 642 LSCVRLLSL 650 (1162)
Q Consensus 642 ~~~l~LLs~ 650 (1162)
...-+.+..
T Consensus 172 ~~~~~al~~ 180 (217)
T 2pl2_A 172 AQYAKALEQ 180 (217)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666555543
No 124
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=61.44 E-value=18 Score=32.44 Aligned_cols=52 Identities=13% Similarity=-0.009 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCC-cchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCc
Q 001079 565 KGAANNYHCSWW-KRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGW 616 (1162)
Q Consensus 565 ~~Ai~~Yk~a~R-~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW 616 (1162)
+.|+..|..+-+ ..........+|..|+..|+|++|..+|..++......+-
T Consensus 36 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 88 (115)
T 2kat_A 36 DAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGD 88 (115)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccc
Confidence 345555554421 1112235678999999999999999999999988766553
No 125
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=60.67 E-value=23 Score=33.29 Aligned_cols=61 Identities=20% Similarity=0.215 Sum_probs=44.2
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
....+|..+++.|+|++|..+|..++...... ...+..++.|+..+++.++=+...-+.+.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYD------ARYFLGLGACRQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 35678999999999999999999999865433 23445677788888887665554444443
No 126
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=60.52 E-value=26 Score=34.54 Aligned_cols=82 Identities=9% Similarity=-0.057 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCc-chhHHhhHHHHHHHHhc-CCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHH
Q 001079 564 TKGAANNYHCSWWK-RHGVVLDGEIAAVCFKH-GNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYL 641 (1162)
Q Consensus 564 t~~Ai~~Yk~a~R~-Rsa~~L~~dLA~lyy~~-gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv 641 (1162)
.+.|+..|..+-+. .....+...+|..|+.. |+|++|..+|..++. .. .. .-...++..++.|+.++++.++=+
T Consensus 58 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~-~~--~~~~~~~~~l~~~~~~~~~~~~A~ 133 (225)
T 2vq2_A 58 NDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-DP-TY--PTPYIANLNKGICSAKQGQFGLAE 133 (225)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-ST-TC--SCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-Cc-CC--cchHHHHHHHHHHHHHcCCHHHHH
Confidence 35566666655311 11123456788888888 888888888888887 11 11 112456677888888888876655
Q ss_pred HHHHHHhc
Q 001079 642 LSCVRLLS 649 (1162)
Q Consensus 642 ~~~l~LLs 649 (1162)
...-+.+.
T Consensus 134 ~~~~~~~~ 141 (225)
T 2vq2_A 134 AYLKRSLA 141 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
No 127
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=60.21 E-value=50 Score=40.66 Aligned_cols=139 Identities=16% Similarity=0.164 Sum_probs=73.3
Q ss_pred CCCCeEEEEEEEeCCCCceEeeeEEEEEEec---ccCCCCceEEeecCceEeeCCCeE-EEEEcCCCCCeeEEEEEEEEE
Q 001079 701 DGDPGTLSVTVWSGFPDDITVDTLSLTLMAT---YNADEGAKALNTSTATVLKPGRNT-ITVDLPPQKPGSYVLGALTGH 776 (1162)
Q Consensus 701 ~~d~~~L~V~l~s~LP~~I~id~v~l~L~~~---~~~~~~~~~l~s~~~~~LkPG~Nk-i~l~~~~~~~G~y~l~si~i~ 776 (1162)
-++++.|.|.+.|.-..+ ..+.+.+... |++-....+.+....++|.|+..+ +.+.-.....+.+-.++--|+
T Consensus 494 ~G~df~v~l~~~N~s~~~---~~v~~~l~a~~v~YtG~~~~~~~~~~~~v~L~p~~~~~i~~~i~y~~Y~~~L~d~~~i~ 570 (692)
T 1vjj_A 494 VGKEVNLVLLLKNLSRDT---KTVTVNMTAWTIIYNGTLVHEVWKDSATMSLDPEEEAEHPIKISYAQYERYLKSDNMIR 570 (692)
T ss_dssp TTSCEEEEEEEEECSSSC---EEEEEEEEEEEECTTCCEEEEEEEEEEEEEECTTCEEEEEEEECHHHHHTTCCTTCEEE
T ss_pred CCCCEEEEEEEEECCCCC---EEEEEEEEEEEEeeCCccccceEEeeEEEEECCCceEEEEEEECHHHHhhhcccCCeEE
Confidence 478899999999987665 3344444432 333323345556678899999877 555433222222111111111
Q ss_pred EcceEEEecccccCCCCCCCCccccccCCCCeEEEEcCCCccceeecccCCcccCceEEEEEEEEcCcccc-cceEEEEe
Q 001079 777 IGRLRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYSL-KGAILQID 855 (1162)
Q Consensus 777 ig~l~F~s~~f~~~~p~~~~~~~~~e~~~~p~~~v~~~~~~~~L~a~~~~P~L~g~~q~v~l~v~sg~~~i-~~~~L~l~ 855 (1162)
+-- ++ ....+.+ . -.+.-+.+..| +|.++..+.+.+|....++|++++-=... ++.++++-
T Consensus 571 ~~a---~~----~v~et~~--~-----~~~~di~l~~P----~l~I~v~g~~~v~~~l~v~v~f~NPL~~~L~~c~~~vE 632 (692)
T 1vjj_A 571 ITA---VC----KVPDESE--V-----VVERDIILDNP----TLTLEVLNEARVRKPVNVQMLFSNPLDEPVRDCVLMVE 632 (692)
T ss_dssp EEE---EE----ECTTSCC--E-----EEEEEEECBCC----CEEEEECSCCBTTSCEEEEEEEECCSSSCBCSEEEEEE
T ss_pred EEE---EE----EECCCce--E-----EEEEEEEEcCC----CEEEEeCCCcccCCeEEEEEEEECCCCCcccceEEEEE
Confidence 100 00 0001000 0 01112222222 45555668889999999999999874433 88888774
Q ss_pred cCCCCc
Q 001079 856 TGPGLT 861 (1162)
Q Consensus 856 ~~~gl~ 861 (1162)
++||.
T Consensus 633 -G~GL~ 637 (692)
T 1vjj_A 633 -GSGLL 637 (692)
T ss_dssp -CTTTS
T ss_pred -CCCCC
Confidence 44443
No 128
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=60.21 E-value=23 Score=33.99 Aligned_cols=61 Identities=15% Similarity=0.220 Sum_probs=43.7
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
....+|..++..|+|++|..+|..++...... ...+..++.|+..+++.++=+...-+.+.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD------SRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 35678999999999999999999998765433 23345677788888877665554444443
No 129
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=59.91 E-value=14 Score=41.93 Aligned_cols=67 Identities=27% Similarity=0.424 Sum_probs=51.4
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhhhcC-------C---cchHHHHHHHHHHHHHHHhccchhHHHHHHHHhcc
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGE-------G---WQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSL 650 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~e-------g---W~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs~ 650 (1162)
...+|..|+.+|+|++|..+|..++..+... . -......++..++.|+.++++.++=+..+-+.|..
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 5678999999999999999999999865442 1 22334578888999999999987766666666653
No 130
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=59.88 E-value=14 Score=33.36 Aligned_cols=37 Identities=11% Similarity=-0.079 Sum_probs=30.8
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcch
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQD 618 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~ 618 (1162)
....-+|..+|+.|+|++|..+|..++..-...-|..
T Consensus 44 rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~ 80 (93)
T 3bee_A 44 AALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRV 80 (93)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 4467789999999999999999999998766655653
No 131
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=59.63 E-value=22 Score=42.10 Aligned_cols=79 Identities=13% Similarity=0.006 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCC-cchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHh---ccchhH
Q 001079 565 KGAANNYHCSWW-KRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKIL---NDEAGY 640 (1162)
Q Consensus 565 ~~Ai~~Yk~a~R-~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L---~~~~dY 640 (1162)
+.|+..|.++-+ ......+...+|..|+..|+|++|..+|..++....+. ...+..++.|+..+ ++.++-
T Consensus 74 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~g~~~~A 147 (568)
T 2vsy_A 74 AEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE------PYITAQLLNWRRRLCDWRALDVL 147 (568)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhccccHHHH
Confidence 445555555421 11112334566666666666666666666666554322 23445566666666 444444
Q ss_pred HHHHHHHhc
Q 001079 641 LLSCVRLLS 649 (1162)
Q Consensus 641 v~~~l~LLs 649 (1162)
+...-+.+.
T Consensus 148 ~~~~~~al~ 156 (568)
T 2vsy_A 148 SAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444333333
No 132
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=59.13 E-value=27 Score=36.84 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=49.6
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
.+...+|..|+..|+|++|..+|..++...... ..++..++.|+.++++.++=+...-+.+.
T Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN------ASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------SHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccc------hHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 457899999999999999999999999876553 34566788999999998776666655554
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=59.02 E-value=20 Score=39.67 Aligned_cols=67 Identities=31% Similarity=0.382 Sum_probs=51.1
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCc---------chHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGW---------QDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW---------~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
....+|..|+.+|+|++|..+|..++.......- ..+...++..++.|+.++++.++=+..+-+.+.
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567899999999999999999999998766531 122246778889999999988766655555544
No 134
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=58.75 E-value=22 Score=37.98 Aligned_cols=62 Identities=15% Similarity=-0.051 Sum_probs=47.4
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
.+...+|..|++.|+|++|..+|..++....... ..+..++.|+..+++.++-+...-+++.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 99 (359)
T 3ieg_A 38 IAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT------AARLQRGHLLLKQGKLDEAEDDFKKVLK 99 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc------hHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 4577899999999999999999999998754322 4566778888888887776666655554
No 135
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=58.34 E-value=25 Score=38.11 Aligned_cols=52 Identities=23% Similarity=0.245 Sum_probs=42.3
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchh
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 639 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~d 639 (1162)
.+...+|..|+++|+|++|..+|..++...... ..++..++.|+..+|+..+
T Consensus 201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~------~~~l~~l~~~~~~~g~~~e 252 (291)
T 3mkr_A 201 LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH------PETLINLVVLSQHLGKPPE 252 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCCHH
Confidence 467889999999999999999999999865432 3457778888888888753
No 136
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=57.85 E-value=28 Score=37.63 Aligned_cols=23 Identities=4% Similarity=-0.149 Sum_probs=19.5
Q ss_pred HHHHHHHHhcchHHHHHHHHHHH
Q 001079 222 SLAFMFEMAHLHEDALREYDELE 244 (1162)
Q Consensus 222 ~LA~~fe~~gL~edAL~~YdEL~ 244 (1162)
.+|..|...|.+++|+..|++.-
T Consensus 69 ~~~~~~~~~g~~~~A~~~~~~al 91 (368)
T 1fch_A 69 EEGLRRLQEGDLPNAVLLFEAAV 91 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 57999999999999999887754
No 137
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=57.62 E-value=27 Score=34.17 Aligned_cols=63 Identities=17% Similarity=0.106 Sum_probs=46.5
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLL 648 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LL 648 (1162)
.+...+|..|+..|+|++|...|..++........ ...+..++.|+..+++.++-+...-+.|
T Consensus 109 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 109 ELACELAVQYNQVGRDEEALELLWNILKVNLGAQD----GEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT----THHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh----HHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 45788999999999999999999999876433211 1345567888888988876555554444
No 138
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=57.27 E-value=25 Score=40.91 Aligned_cols=68 Identities=29% Similarity=0.366 Sum_probs=52.3
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCc---------chHHHHHHHHHHHHHHHhccchhHHHHHHHHhcc
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGW---------QDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSL 650 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW---------~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs~ 650 (1162)
....+|..|+.+|+|+.|..+|..++........ ..+...++..++.|+.++++.++=+..+-+.|..
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3567899999999999999999999997766531 2222567778999999999987766666655543
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=57.15 E-value=28 Score=34.05 Aligned_cols=61 Identities=11% Similarity=0.010 Sum_probs=44.6
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
....+|..+++.|+|++|..+|..++..-... ...+..++.|+..+++.++=+...-+.+.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~ 98 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN------VDYIMGLAAIYQIKEQFQQAADLYAVAFA 98 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 46789999999999999999999999865433 22444567788888877665555444443
No 140
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=55.91 E-value=23 Score=38.08 Aligned_cols=54 Identities=17% Similarity=0.108 Sum_probs=33.3
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHH
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYL 641 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv 641 (1162)
.+...+|..|+.+|+|++|..+|..++...... ...+..++.++..+++.++-+
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~ 92 (281)
T 2c2l_A 39 VYYTNRALCYLKMQQPEQALADCRRALELDGQS------VKAHFFLGQCQLEMESYDEAI 92 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC------HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHH
Confidence 345667777777777777777777777653322 234445666666666665433
No 141
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=55.28 E-value=25 Score=43.88 Aligned_cols=60 Identities=25% Similarity=0.300 Sum_probs=47.0
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRL 647 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~L 647 (1162)
.+...||..|+.+|+|++|..+|..++..--+. ...+..++.|+..+++.++.....-++
T Consensus 112 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~------~~a~~~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 112 DAHSNLASIHKDSGNIPEAIASYRTALKLKPDF------PDAYCNLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence 356889999999999999999999999864332 356678889999999987766554433
No 142
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.26 E-value=45 Score=37.15 Aligned_cols=82 Identities=13% Similarity=-0.085 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHH
Q 001079 563 LTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1162)
Q Consensus 563 Lt~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~ 642 (1162)
+...++..+...+..+.+..+..-++.++...|+|++|..++..++..+...+=..+...+...++.++...++.++-+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 156 (434)
T 4b4t_Q 77 FIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLA 156 (434)
T ss_dssp HHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHH
Confidence 33444455555555555556677789999999999999999999999888777555667777888888888777655444
Q ss_pred HH
Q 001079 643 SC 644 (1162)
Q Consensus 643 ~~ 644 (1162)
..
T Consensus 157 ~l 158 (434)
T 4b4t_Q 157 LI 158 (434)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 143
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=54.95 E-value=33 Score=40.64 Aligned_cols=76 Identities=7% Similarity=-0.044 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcC-CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHH
Q 001079 564 TKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1162)
Q Consensus 564 t~~Ai~~Yk~a~-R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~ 642 (1162)
.+.|+..|.++- .......+...+|..|+.+|+|++|..+|..++...... ...+..++.|+.++++.++-+.
T Consensus 39 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~ 112 (568)
T 2vsy_A 39 TTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH------PGIALWLGHALEDAGQAEAAAA 112 (568)
T ss_dssp HHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHH
Confidence 456667676653 112223457889999999999999999999999876543 3456677888888877755444
Q ss_pred HHH
Q 001079 643 SCV 645 (1162)
Q Consensus 643 ~~l 645 (1162)
..-
T Consensus 113 ~~~ 115 (568)
T 2vsy_A 113 AYT 115 (568)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 144
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=54.75 E-value=35 Score=35.86 Aligned_cols=79 Identities=16% Similarity=0.098 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCCc-chhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHH
Q 001079 564 TKGAANNYHCSWWK-RHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1162)
Q Consensus 564 t~~Ai~~Yk~a~R~-Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~ 642 (1162)
.+.|+..|..+-.. .....+...+|..|+..|+|++|..+|..++...... ...+..++.|+.++++.++=+.
T Consensus 188 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~ 261 (327)
T 3cv0_A 188 YDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY------VRVMYNMAVSYSNMSQYDLAAK 261 (327)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhccHHHHHH
Confidence 34555555554211 1112345678888888888888888888887765432 2345567777777777755444
Q ss_pred HHHHHh
Q 001079 643 SCVRLL 648 (1162)
Q Consensus 643 ~~l~LL 648 (1162)
..-+.+
T Consensus 262 ~~~~a~ 267 (327)
T 3cv0_A 262 QLVRAI 267 (327)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 443333
No 145
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=54.62 E-value=27 Score=40.66 Aligned_cols=73 Identities=16% Similarity=0.092 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCc-c---hhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchh
Q 001079 564 TKGAANNYHCSWWK-R---HGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAG 639 (1162)
Q Consensus 564 t~~Ai~~Yk~a~R~-R---sa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~d 639 (1162)
.+.|+..|.++-+. . .-..+...+|..|+..|+|++|..+|..++...... ...+..++.++..+++.++
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW------PEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHH
Confidence 56677777776421 1 334568899999999999999999999999876543 2456677778877776655
Q ss_pred HHH
Q 001079 640 YLL 642 (1162)
Q Consensus 640 Yv~ 642 (1162)
-+.
T Consensus 311 Ai~ 313 (474)
T 4abn_A 311 LLE 313 (474)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 146
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=54.00 E-value=36 Score=31.35 Aligned_cols=60 Identities=18% Similarity=0.128 Sum_probs=45.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
..++|..+++.|+|++|...|..++...... ...+..++.|+..+++.++=+...-+.+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 79 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALNHARM 79 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999876554 23455677788888887665555544444
No 147
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=53.99 E-value=34 Score=38.27 Aligned_cols=79 Identities=13% Similarity=-0.015 Sum_probs=53.0
Q ss_pred HHHHHHHHhcCC-cchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHH
Q 001079 565 KGAANNYHCSWW-KRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLS 643 (1162)
Q Consensus 565 ~~Ai~~Yk~a~R-~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~ 643 (1162)
+.|+..|..+-+ ......+...+|..|++.|+|++|..+|..++...... ...+..++.|+.++++.++=+..
T Consensus 43 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~ 116 (450)
T 2y4t_A 43 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF------TAARLQRGHLLLKQGKLDEAEDD 116 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 345555554321 11123456789999999999999999999999875443 34566778888888887666655
Q ss_pred HHHHhc
Q 001079 644 CVRLLS 649 (1162)
Q Consensus 644 ~l~LLs 649 (1162)
.-+++.
T Consensus 117 ~~~~~~ 122 (450)
T 2y4t_A 117 FKKVLK 122 (450)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 555553
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=51.74 E-value=41 Score=32.45 Aligned_cols=61 Identities=15% Similarity=0.097 Sum_probs=43.5
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHH-HHHhccc--hhHHHHHHHHh
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAEC-QKILNDE--AGYLLSCVRLL 648 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~C-lk~L~~~--~dYv~~~l~LL 648 (1162)
.+...+|..|+..|+|++|..+|..++...... ...+..++.| +...++. ++-+...-+.+
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al 108 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN------AELYAALATVLYYQASQHMTAQTRAMIDKAL 108 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 346789999999999999999999999877654 3455667777 5566664 44444443333
No 149
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=51.13 E-value=47 Score=38.60 Aligned_cols=76 Identities=11% Similarity=-0.105 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcC-CcchhHHhhHHHHHHHHhcCCH-HHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhH
Q 001079 563 LTKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNY-DQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGY 640 (1162)
Q Consensus 563 Lt~~Ai~~Yk~a~-R~Rsa~~L~~dLA~lyy~~gdy-~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dY 640 (1162)
..+.++..+..+. .......+...+|..|+..|+| ++|..+|..++...... ...+..++.|+.++++.++=
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A 156 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL------VEAWNQLGEVYWKKGDVTSA 156 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHH
Confidence 3455555555442 1122234578899999999999 99999999999875543 23445566666666665443
Q ss_pred HHHH
Q 001079 641 LLSC 644 (1162)
Q Consensus 641 v~~~ 644 (1162)
+...
T Consensus 157 ~~~~ 160 (474)
T 4abn_A 157 HTCF 160 (474)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 150
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=50.47 E-value=33 Score=42.75 Aligned_cols=80 Identities=14% Similarity=0.045 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCCcc-hhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHH
Q 001079 564 TKGAANNYHCSWWKR-HGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1162)
Q Consensus 564 t~~Ai~~Yk~a~R~R-sa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~ 642 (1162)
.++|+..|.++=+.. ....+...||..|..+|+|++|...|..++..--.. ...+..++.|+.++++.++=+.
T Consensus 59 ~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~------~~a~~~Lg~~~~~~g~~~eAi~ 132 (723)
T 4gyw_A 59 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF------ADAHSNLASIHKDSGNIPEAIA 132 (723)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHH
Confidence 467777777763111 122346788999999999999999999988753322 3456778888888888876555
Q ss_pred HHHHHhc
Q 001079 643 SCVRLLS 649 (1162)
Q Consensus 643 ~~l~LLs 649 (1162)
..-+.|.
T Consensus 133 ~~~~Al~ 139 (723)
T 4gyw_A 133 SYRTALK 139 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544444
No 151
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=50.28 E-value=36 Score=36.49 Aligned_cols=62 Identities=24% Similarity=0.210 Sum_probs=48.6
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhcc
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSL 650 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs~ 650 (1162)
....+|..|+..|+|++|..+|..++...... ...+..++.|+.++++.++=+..+-+.+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 67 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQPEQALADCRRALEL 67 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 35789999999999999999999999876543 345667888998888887766666555543
No 152
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=50.26 E-value=78 Score=39.03 Aligned_cols=130 Identities=15% Similarity=0.093 Sum_probs=73.2
Q ss_pred CCCCeEEEEEEEeCCCCceEeeeEEEEEEec---ccCCCCceE-EeecCceEeeCCCeE-EEEEcCC-------CCCeeE
Q 001079 701 DGDPGTLSVTVWSGFPDDITVDTLSLTLMAT---YNADEGAKA-LNTSTATVLKPGRNT-ITVDLPP-------QKPGSY 768 (1162)
Q Consensus 701 ~~d~~~L~V~l~s~LP~~I~id~v~l~L~~~---~~~~~~~~~-l~s~~~~~LkPG~Nk-i~l~~~~-------~~~G~y 768 (1162)
-++++.|.|.+.|.-..+ ..+.+.+... |++-....+ ......++|.|+..+ +.+.-.. ...+.+
T Consensus 485 ~G~df~v~v~~~N~s~~~---~~v~~~l~a~~v~YtG~~~~~~~~~~~~~~~l~p~~~~~v~~~i~y~~Y~~~L~d~~~i 561 (687)
T 2q3z_A 485 MGSDFDVFAHITNNTAEE---YVCRLLLCARTVSYNGILGPECGTKYLLNLTLEPFSEKSVPLCILYEKYRDCLTESNLI 561 (687)
T ss_dssp TTCCEEEEEEEEECSSSC---EEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECTTEEEEEEEEECHHHHTTTCCTTCEE
T ss_pred CCCCEEEEEEEEECCCCC---EEEEEEEEEEEEeeCCcccceEeeeeeeEEEECCCceEEEEEEECHHHHhhhccCCCEE
Confidence 478899999999997665 3455555432 333323335 566678899999866 5553222 233333
Q ss_pred EEEEEEEEEcc---eEEEecccccCCCCCCCCccccccCCCCeEEEEcCCCccceeecccCCcccCceEEEEEEEEcCcc
Q 001079 769 VLGALTGHIGR---LRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDY 845 (1162)
Q Consensus 769 ~l~si~i~ig~---l~F~s~~f~~~~p~~~~~~~~~e~~~~p~~~v~~~~~~~~L~a~~~~P~L~g~~q~v~l~v~sg~~ 845 (1162)
.+.. ...+.. ..|.. .-+.+..| +|.++..+.+.+|....++|++++-=.
T Consensus 562 ~~~a-~~~v~et~~~~~~~----------------------~di~l~~P----~l~I~v~g~~~v~~~~~v~v~f~NPL~ 614 (687)
T 2q3z_A 562 KVRA-LLVEPVINSYLLAE----------------------RDLYLENP----EIKIRILGEPKQKRKLVAEVSLQNPLP 614 (687)
T ss_dssp EEEE-EEEETTTTEEEEEE----------------------EEEECBCC----CCEEEEESCCSSSSCEEEEEEEECCSS
T ss_pred EEEE-EEEECCCCeEEEEE----------------------EEEEEeCC----CEEEEeCCCcccCCeEEEEEEEECCCC
Confidence 3221 111111 01111 11222222 345556677888999999999998743
Q ss_pred cc-cceEEEEecCCCCc
Q 001079 846 SL-KGAILQIDTGPGLT 861 (1162)
Q Consensus 846 ~i-~~~~L~l~~~~gl~ 861 (1162)
.. ++.++++- ++||.
T Consensus 615 ~~L~~c~~~vE-G~GL~ 630 (687)
T 2q3z_A 615 VALEGCTFTVE-GAGLT 630 (687)
T ss_dssp SCBCSEEEEEE-CTTTC
T ss_pred CcccceEEEEE-CCCCC
Confidence 33 88888774 44443
No 153
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=50.19 E-value=27 Score=36.01 Aligned_cols=86 Identities=10% Similarity=-0.017 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhcC-CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHH
Q 001079 563 LTKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYL 641 (1162)
Q Consensus 563 Lt~~Ai~~Yk~a~-R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv 641 (1162)
-.+.|+..|..+- .......+...+|..|++.|+|++|..+|..++... .... .....+..++.|+..+++.++-+
T Consensus 18 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~--~~~~~~~~lg~~~~~~~~~~~A~ 94 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-NATK--AKSADFEYYGKILMKKGQDSLAI 94 (272)
T ss_dssp CHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CTTT--CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-Cchh--HHHHHHHHHHHHHHHcccHHHHH
Confidence 3567777777764 122223478899999999999999999999999833 2222 23456778889999999887766
Q ss_pred HHHHHHhccC
Q 001079 642 LSCVRLLSLD 651 (1162)
Q Consensus 642 ~~~l~LLs~~ 651 (1162)
...-+.+...
T Consensus 95 ~~~~~a~~~~ 104 (272)
T 3u4t_A 95 QQYQAAVDRD 104 (272)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHhcC
Confidence 6666555543
No 154
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=47.27 E-value=40 Score=38.27 Aligned_cols=80 Identities=16% Similarity=0.119 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHH
Q 001079 565 KGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSC 644 (1162)
Q Consensus 565 ~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~ 644 (1162)
+.|+..|..+-...--..+...+|..|++.|+|++|...|..++...... ...+..++.|+.++++.++=+...
T Consensus 23 ~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~ 96 (514)
T 2gw1_A 23 DDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY------SKVLLRRASANEGLGKFADAMFDL 96 (514)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH------HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44555555542111113457889999999999999999999999864322 245667888988888887766665
Q ss_pred HHHhcc
Q 001079 645 VRLLSL 650 (1162)
Q Consensus 645 l~LLs~ 650 (1162)
-+++..
T Consensus 97 ~~~~~~ 102 (514)
T 2gw1_A 97 SVLSLN 102 (514)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 555543
No 155
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=47.08 E-value=75 Score=31.85 Aligned_cols=77 Identities=18% Similarity=0.144 Sum_probs=53.2
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhhh-----cCCcchHHHHHHHHHHHHHHHhccchhHHH---HHHHHhccCCCC
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYS-----GEGWQDLLAEVLPNLAECQKILNDEAGYLL---SCVRLLSLDKGL 654 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~-----~egW~~L~~~~L~~~a~Clk~L~~~~dYv~---~~l~LLs~~~~~ 654 (1162)
+...+|..+..+|+|+.|+..|..++..|- ...|.......+-....|+..|++.++=+. .++++-..+++.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 678999999999999999999999999632 333432222233677889999999876444 445555555554
Q ss_pred CCHHH
Q 001079 655 FSTKE 659 (1162)
Q Consensus 655 ~s~~e 659 (1162)
..+.+
T Consensus 139 ~~~~~ 143 (159)
T 2hr2_A 139 TPGKE 143 (159)
T ss_dssp CTTHH
T ss_pred HHHHH
Confidence 44433
No 156
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=46.64 E-value=1.8e+02 Score=32.69 Aligned_cols=83 Identities=18% Similarity=0.105 Sum_probs=58.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhc--cchhHHHHHHHHhccCCCCCCHHHHHHHHH
Q 001079 588 AAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILN--DEAGYLLSCVRLLSLDKGLFSTKERQAFQS 665 (1162)
Q Consensus 588 A~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~--~~~dYv~~~l~LLs~~~~~~s~~eR~~y~~ 665 (1162)
+.=|..+++|+.|+.++.+-+..+.+.|=...++++-.++++++.+-+ -.++++.-.++|++.-. ..+-+|..|.+
T Consensus 42 ~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~--~~~p~r~~fi~ 119 (336)
T 3lpz_A 42 AARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ--PGEPVRKRFVK 119 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC--TTCHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC--CCCcHHHHHHH
Confidence 333566788888888888888877777777778888888888888744 34667777777776432 22345777888
Q ss_pred HHHHHHh
Q 001079 666 EVISLAY 672 (1162)
Q Consensus 666 ell~~a~ 672 (1162)
+.++-+.
T Consensus 120 ~ai~WS~ 126 (336)
T 3lpz_A 120 EMIDWSK 126 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8776554
No 157
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=46.22 E-value=94 Score=35.79 Aligned_cols=54 Identities=15% Similarity=0.087 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHhcCCcchhH--HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhc
Q 001079 558 QKYLELTKGAANNYHCSWWKRHGV--VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSG 613 (1162)
Q Consensus 558 ~~Yl~Lt~~Ai~~Yk~a~R~Rsa~--~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~ 613 (1162)
+.-.+++..+++-=+.-+ |.-. .+-..+|.+|+..|+|++|..++..+......
T Consensus 76 ~~~~~~~~~~~~~a~~~~--r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~ 131 (394)
T 3txn_A 76 GIEVQLCKDCIEWAKQEK--RTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKK 131 (394)
T ss_dssp HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 555678888877444333 3322 35779999999999999999999999998876
No 158
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=44.99 E-value=30 Score=39.33 Aligned_cols=62 Identities=13% Similarity=-0.007 Sum_probs=42.9
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHH---hccchhHHHH
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKI---LNDEAGYLLS 643 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~---L~~~~dYv~~ 643 (1162)
.+...+|..|+..|+|++|..+|..++...............+..++.|+.. +++.++-+..
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~ 437 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL 437 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 4567889999999999999999999998777665432223345556666666 6665443333
No 159
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=44.48 E-value=23 Score=35.42 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=25.0
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCAL 610 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~ 610 (1162)
+..-||.-||+.|||++|..||..++..
T Consensus 73 ~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 73 YVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 4589999999999999999999998873
No 160
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=44.41 E-value=23 Score=36.15 Aligned_cols=71 Identities=11% Similarity=0.081 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHH
Q 001079 565 KGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYL 641 (1162)
Q Consensus 565 ~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv 641 (1162)
+.|+..|..+-+......+...+|..|+..|+|++|...|..++....+.. ..+..++.++..+++.++-+
T Consensus 135 ~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~------~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 135 DKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL------DLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH------HHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHccCHHHHH
Confidence 344455544421112224567999999999999999999999998654432 34556667776666655433
No 161
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=43.38 E-value=54 Score=38.30 Aligned_cols=85 Identities=15% Similarity=0.114 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCc-chhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchH-HHHHHHHHHHHHHHhccchhHH
Q 001079 564 TKGAANNYHCSWWK-RHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDL-LAEVLPNLAECQKILNDEAGYL 641 (1162)
Q Consensus 564 t~~Ai~~Yk~a~R~-Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L-~~~~L~~~a~Clk~L~~~~dYv 641 (1162)
.+.|++.|..+-.. ..-......||..|++.|+|++|..+|..+...+.+.+-..- ...++..++.++.+.++.++=+
T Consensus 457 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 536 (597)
T 2xpi_A 457 ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI 536 (597)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence 34555555554210 111234678999999999999999999999988754221111 1345666777777777765544
Q ss_pred HHHHHHh
Q 001079 642 LSCVRLL 648 (1162)
Q Consensus 642 ~~~l~LL 648 (1162)
...-+++
T Consensus 537 ~~~~~~~ 543 (597)
T 2xpi_A 537 DALNQGL 543 (597)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4443333
No 162
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=43.28 E-value=27 Score=42.92 Aligned_cols=79 Identities=18% Similarity=0.079 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCC-cchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHH
Q 001079 564 TKGAANNYHCSWW-KRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1162)
Q Consensus 564 t~~Ai~~Yk~a~R-~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~ 642 (1162)
.+.|+..|.++-+ .-....+...+|..|+.+|+|++|...|..++...-.. ...+..++.|+.++++.++ +.
T Consensus 449 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~~~~~g~~~~-~~ 521 (681)
T 2pzi_A 449 VAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE------LAPKLALAATAELAGNTDE-HK 521 (681)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------SHHHHHHHHHHHHHTCCCT-TC
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCChHH-HH
Confidence 4566676766531 11122456789999999999999999999999765443 2334466667777776666 55
Q ss_pred HHHHHhc
Q 001079 643 SCVRLLS 649 (1162)
Q Consensus 643 ~~l~LLs 649 (1162)
..-+.+.
T Consensus 522 ~~~~al~ 528 (681)
T 2pzi_A 522 FYQTVWS 528 (681)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444443
No 163
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=43.05 E-value=34 Score=38.68 Aligned_cols=30 Identities=20% Similarity=0.187 Sum_probs=25.9
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhhh
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYS 612 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~ 612 (1162)
.-..+|..|+++|+|++|..+|..+...+.
T Consensus 96 ~~~nla~~y~~~g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 96 TWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence 356899999999999999999999886543
No 164
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=42.53 E-value=53 Score=32.94 Aligned_cols=65 Identities=22% Similarity=0.096 Sum_probs=47.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhhhc-------CCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSG-------EGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~-------egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
...+|..++..|+|+.|+..|..++..-.+ .... .-.......+.|+.+|++.++=+..+-+.|.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~-~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAG-FDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhcc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 578899999999999999999999986555 1110 1122666778888889988776666555443
No 165
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=42.48 E-value=49 Score=36.96 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=32.4
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHH
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLS 643 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~ 643 (1162)
+...+|..|+..|+|++|..+|..++...... ...+..++.|+..+++.++-+..
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKNDN------TEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 45567777777777777777777776654332 23344455555555555443333
No 166
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=42.11 E-value=58 Score=37.29 Aligned_cols=77 Identities=14% Similarity=0.089 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCCc-chhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHH
Q 001079 564 TKGAANNYHCSWWK-RHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1162)
Q Consensus 564 t~~Ai~~Yk~a~R~-Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~ 642 (1162)
.+.|+..|..+-+. .....+...+|..|++.|+|++|..+|..++..+.... .++..++.|+..+++.++=+.
T Consensus 326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~ 399 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP------EVPTFFAEILTDRGDFDTAIK 399 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT------HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHhCCHHHHHH
Confidence 45666777665311 11123467789999999999999999999888765543 345567888888888765444
Q ss_pred HHHH
Q 001079 643 SCVR 646 (1162)
Q Consensus 643 ~~l~ 646 (1162)
..-+
T Consensus 400 ~~~~ 403 (537)
T 3fp2_A 400 QYDI 403 (537)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 167
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=41.36 E-value=2e+02 Score=27.66 Aligned_cols=68 Identities=16% Similarity=0.191 Sum_probs=47.2
Q ss_pred CccccCCCCeEEEEEEEeCCCCceEeeeEEEEEEecccCCCCceEEeecCceEeeCCCeE-EEEEcCCCCCeeEEEEE
Q 001079 696 PLELCDGDPGTLSVTVWSGFPDDITVDTLSLTLMATYNADEGAKALNTSTATVLKPGRNT-ITVDLPPQKPGSYVLGA 772 (1162)
Q Consensus 696 ~~~~~~~d~~~L~V~l~s~LP~~I~id~v~l~L~~~~~~~~~~~~l~s~~~~~LkPG~Nk-i~l~~~~~~~G~y~l~s 772 (1162)
|.....++.+++.+++++.--.+. ....|.|.. +|.. +.+. ...|.||..+ +++...+...|.|.|..
T Consensus 26 P~~v~~G~~~ti~vtV~N~G~~~a--~~~~V~lyv-----ng~~-v~t~-~v~La~G~s~tv~f~~~~~~~G~~~v~A 94 (127)
T 3idu_A 26 PDVVGVNKLAEYEVHVKNLGGIGV--PSTKVRVYI-----NGTL-YKNW-TVSLGPKEEKVLTFNWTPTQEGMYRINA 94 (127)
T ss_dssp CSEECTTCCEEEEEEEEECSSSCE--EEEEEEEEE-----TTEE-EEEE-EEEECTTCEEEEEEEECCSSCEEEEEEE
T ss_pred CCcccCCCEEEEEEEEEECCCCcc--CCcEEEEEE-----CCEE-EeeE-EeccCCCCeEEEEEEEEcCCCcEEEEEE
Confidence 445667899999999999975554 456666543 3433 2222 3469999875 78888888899997543
No 168
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=41.12 E-value=36 Score=39.65 Aligned_cols=68 Identities=10% Similarity=0.079 Sum_probs=49.9
Q ss_pred hHHHHhhcCHHHHHHHHHHHHHHHHHHHHhc-C-CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhh
Q 001079 544 PNLLKSLSSVEEFEQKYLELTKGAANNYHCS-W-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYS 612 (1162)
Q Consensus 544 ~~L~~ALsS~e~F~~~Yl~Lt~~Ai~~Yk~a-~-R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~ 612 (1162)
..|-.++.+...+.+. +.+.++|++.|.+. | -+.........||.+|+++|+|++|..+|.+++.-+.
T Consensus 344 ~nLa~~y~~~g~~~eA-~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~ 413 (433)
T 3qww_A 344 YQAMGVCLYMQDWEGA-LKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME 413 (433)
T ss_dssp HHHHHHHHHTTCHHHH-HHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCHHHH-HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 4455555555555433 55888888888875 4 4555555588999999999999999999999997543
No 169
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=40.56 E-value=68 Score=36.14 Aligned_cols=64 Identities=14% Similarity=0.024 Sum_probs=46.1
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchH---HHHHHHHHHHHHHHhccchh---HHHHHHHH
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDL---LAEVLPNLAECQKILNDEAG---YLLSCVRL 647 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L---~~~~L~~~a~Clk~L~~~~d---Yv~~~l~L 647 (1162)
--.||.+|+.+|+|++|..+|..++..+...+-... ...++..++.++..+++.++ |...++++
T Consensus 54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i 123 (472)
T 4g1t_A 54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV 123 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 456899999999999999999999987665443221 13455677888888888754 55545544
No 170
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=40.14 E-value=74 Score=34.89 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=34.4
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Q 001079 583 LDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLL 648 (1162)
Q Consensus 583 L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LL 648 (1162)
+...+|..|...|+|++|..+|..++...... ...+..++.++.+.++.++=+...-+.+
T Consensus 273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al 332 (388)
T 1w3b_A 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTH------ADSLNNLANIKREQGNIEEAVRLYRKAL 332 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35567777777777777777777777654322 2334455556655555554444433333
No 171
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=39.23 E-value=16 Score=40.70 Aligned_cols=68 Identities=18% Similarity=0.175 Sum_probs=50.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCc-----------chHHHHHHHHHHHHHHHhccchhHHHHHHHHhccC
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGW-----------QDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSLD 651 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW-----------~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs~~ 651 (1162)
...+|..|+.+|+|++|..+|..++........ ..+....+..++.|+.++++.++=+..+-+.|..+
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 260 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE 260 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 457899999999999999999999876543221 01111367788999999999887777776666543
No 172
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=39.18 E-value=2.2e+02 Score=31.56 Aligned_cols=80 Identities=10% Similarity=0.035 Sum_probs=42.9
Q ss_pred HHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhcc--chhHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 001079 591 CFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILND--EAGYLLSCVRLLSLDKGLFSTKERQAFQSEVI 668 (1162)
Q Consensus 591 yy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~--~~dYv~~~l~LLs~~~~~~s~~eR~~y~~ell 668 (1162)
|.++++|+.|..++.+-+..+.+.|=...++++-.++++++.+-+. .++++.-..+|++... ..+..|..|.++.+
T Consensus 43 y~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p--~~~~~r~~fi~~ai 120 (312)
T 2wpv_A 43 YVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD--PSEPNLKDVITGMN 120 (312)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC--TTCTTHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC--CCCchHHHHHHHHH
Confidence 4445566666666666555555555555555665666666655333 2456665556664321 11224556666666
Q ss_pred HHHh
Q 001079 669 SLAY 672 (1162)
Q Consensus 669 ~~a~ 672 (1162)
+-+.
T Consensus 121 ~WS~ 124 (312)
T 2wpv_A 121 NWSI 124 (312)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5443
No 173
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=38.19 E-value=48 Score=37.94 Aligned_cols=53 Identities=17% Similarity=0.064 Sum_probs=37.0
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHh
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKIL 634 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L 634 (1162)
.+...+|..|+..|+|++|..+|..++...............+...+.|+..+
T Consensus 379 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~ 431 (537)
T 3fp2_A 379 EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQ 431 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHH
Confidence 34677899999999999999999999988765553332222333444555544
No 174
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=37.11 E-value=1.2e+02 Score=37.35 Aligned_cols=129 Identities=16% Similarity=0.121 Sum_probs=71.5
Q ss_pred CCCCeEEEEEEEeCCCCceEeeeEEEEEEec---ccCCCCceEEeecCceEeeCCCeE-EEEEcCC-------CCCeeEE
Q 001079 701 DGDPGTLSVTVWSGFPDDITVDTLSLTLMAT---YNADEGAKALNTSTATVLKPGRNT-ITVDLPP-------QKPGSYV 769 (1162)
Q Consensus 701 ~~d~~~L~V~l~s~LP~~I~id~v~l~L~~~---~~~~~~~~~l~s~~~~~LkPG~Nk-i~l~~~~-------~~~G~y~ 769 (1162)
-++++.|.|.+.|.-..+ ..+.+.+... |++-....+.+....++|.|+..+ +.+.-.. ...+.+.
T Consensus 484 ~G~df~v~v~~~N~s~~~---~~v~~~l~a~~v~YtG~~~~~~~~~~~~~~L~p~~~~~v~~~i~y~~Y~~~L~d~~~i~ 560 (695)
T 1g0d_A 484 FGTDFDVIVEVKNEGGRD---AHAQLTMLAMAVTYNSLRRGECQRKTISVTVPAHKAHKEVMRLHYDDYVRCVSEHHLIR 560 (695)
T ss_dssp TTCCEEEEEEEEECSSSC---EEEEEEEEEEEECTTCBCCCCCCEEEEEEEECTTEEEEEEEEECHHHHTTTCCTTCEEE
T ss_pred CCCCEEEEEEEEECCCCC---EEEEEEEEEEEEeeCCcccCceeEeeEEEEECCCceEEEEEEECHHHHhhhcccCCeEE
Confidence 478899999999987665 2344444432 443333334455568889999876 4553222 2233333
Q ss_pred EEEEEEEEcc---eEEEecccccCCCCCCCCccccccCCCCeEEEEcCCCccceeecccCCcccCceEEEEEEEEcCccc
Q 001079 770 LGALTGHIGR---LRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYS 846 (1162)
Q Consensus 770 l~si~i~ig~---l~F~s~~f~~~~p~~~~~~~~~e~~~~p~~~v~~~~~~~~L~a~~~~P~L~g~~q~v~l~v~sg~~~ 846 (1162)
+..+ ..+.. ..+. +.-+.+..| +|.++..+.+.+|....++|++++-=..
T Consensus 561 ~~a~-~~v~et~~~~~~----------------------~~di~l~~P----~l~I~v~g~~~v~~~l~a~vsf~NPL~~ 613 (695)
T 1g0d_A 561 VKAL-LDAPGENGPIMT----------------------VANIPLSTP----ELLVQVPGKAVVWEPLTAYVSFTNPLPV 613 (695)
T ss_dssp EEEE-EECCC---EEEE----------------------EEEEECBCC----CCEEECCSCEETTCCEEEEEEEECCSSS
T ss_pred EEEE-EEECCCCeEEEE----------------------EEEEEEcCC----CEEEEeCCCcccCCeEEEEEEEECCCCC
Confidence 2211 11111 0111 011222222 3455566778889999999999987433
Q ss_pred c-cceEEEEecCCCC
Q 001079 847 L-KGAILQIDTGPGL 860 (1162)
Q Consensus 847 i-~~~~L~l~~~~gl 860 (1162)
. ++.++++- ++||
T Consensus 614 ~L~~c~~~vE-G~GL 627 (695)
T 1g0d_A 614 PLKGGVFTLE-GAGL 627 (695)
T ss_dssp CEESCEEEEE-ETTT
T ss_pred cccceEEEEE-CCCC
Confidence 3 78887763 3343
No 175
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=36.35 E-value=62 Score=34.64 Aligned_cols=59 Identities=10% Similarity=-0.023 Sum_probs=44.5
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHH
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSC 644 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~ 644 (1162)
.+...+|.+|...|+|++|...|..++..... |. .......++.++..+++.++-+...
T Consensus 220 ~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~--~~--~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 220 ALATQLALQLHQVGRNEEALELLFGHLRXDLT--AA--DGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--GG--GGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcccc--cc--cchHHHHHHHHHHHcCCCCcHHHHH
Confidence 45789999999999999999999999986432 21 2345667788888888876544433
No 176
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=36.34 E-value=28 Score=33.71 Aligned_cols=29 Identities=14% Similarity=0.045 Sum_probs=26.0
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCAL 610 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~ 610 (1162)
-+..-||.-||+.|||.+|..++..++..
T Consensus 75 d~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 75 DYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 44788999999999999999999999873
No 177
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=35.24 E-value=1.2e+02 Score=35.14 Aligned_cols=63 Identities=14% Similarity=0.008 Sum_probs=48.3
Q ss_pred HHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 581 VVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 581 ~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
..+...+|..|++.|+|++|..+|..++...... ..++..++.|+.++++.++=+...-+++.
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTND------ANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3457889999999999999999999999875332 35667788888888888765555544444
No 178
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=34.99 E-value=77 Score=39.30 Aligned_cols=129 Identities=16% Similarity=0.160 Sum_probs=71.9
Q ss_pred CCCCeEEEEEEEeCCCCceEeeeEEEEEEec---ccCCCCceEEeecCceEeeCCCeE-EEEEcCC-------CCCeeEE
Q 001079 701 DGDPGTLSVTVWSGFPDDITVDTLSLTLMAT---YNADEGAKALNTSTATVLKPGRNT-ITVDLPP-------QKPGSYV 769 (1162)
Q Consensus 701 ~~d~~~L~V~l~s~LP~~I~id~v~l~L~~~---~~~~~~~~~l~s~~~~~LkPG~Nk-i~l~~~~-------~~~G~y~ 769 (1162)
-++++.|.|.+.|.-..+ ..+.+.+... |++-....+.+....++|.|+..+ +.+.-.. ...+.+.
T Consensus 529 iG~df~v~l~~~N~s~~~---~~v~~~l~a~~v~YtG~~~~~~~~~~~~~~L~p~~~~~i~~~i~y~~Y~~~L~d~~~i~ 605 (731)
T 1ex0_A 529 LGKDFKLSITFRNNSHNR---YTITAYLSANITFYTGVPKAEFKKETFDVTLEPLSFKKEAVLIQAGEYMGQLLEQASLH 605 (731)
T ss_dssp TTCCEEEEEEEEECSSSC---EEEEEEEEEEEECTTSCEEEEEEEEEEEEEECTTEEEEEEEEECHHHHTTTCCTTCEEE
T ss_pred CCCCEEEEEEEEECCCCC---EEEEEEEEEEEEeeCCccccceeEeeEEEEECCCceEEEEEEECHHHHhhhccCCCEEE
Confidence 378899999999987665 3444554432 333323345566678899999876 4443222 2233333
Q ss_pred EEEEEEEEcc---eEEEecccccCCCCCCCCccccccCCCCeEEEEcCCCccceeecccCCcccCceEEEEEEEEcCccc
Q 001079 770 LGALTGHIGR---LRFRSHSFSKVGPADSDDFMSYEKPTRPILKVFNPRPLVDLAAAISSPLLINEAQWVGIIVQPIDYS 846 (1162)
Q Consensus 770 l~si~i~ig~---l~F~s~~f~~~~p~~~~~~~~~e~~~~p~~~v~~~~~~~~L~a~~~~P~L~g~~q~v~l~v~sg~~~ 846 (1162)
+.. ...+.. ..|. +.-+.+..| +|.++..+.+.+|....++|++++-=..
T Consensus 606 ~~a-~~~v~et~~~~~~----------------------~~di~l~~P----~l~I~v~g~~~v~~~l~v~vsf~NPL~~ 658 (731)
T 1ex0_A 606 FFV-TARINETRDVLAK----------------------QKSTVLTIP----EIIIKVRGTQVVGSDMTVTVQFTNPLKE 658 (731)
T ss_dssp EEE-EEEETTTCCEEEE----------------------EEEEECBCC----CCEEEEEECCBTTSCEEEEEEEECCSSS
T ss_pred EEE-EEEECCCCeEEEE----------------------EEEEEEeCC----CEEEEeCCCcccCCeEEEEEEEECCCCC
Confidence 211 111111 1111 011222222 3445556778889999999999987443
Q ss_pred c-cceEEEEecCCCC
Q 001079 847 L-KGAILQIDTGPGL 860 (1162)
Q Consensus 847 i-~~~~L~l~~~~gl 860 (1162)
. ++.++++- ++||
T Consensus 659 ~L~~c~~~vE-G~GL 672 (731)
T 1ex0_A 659 TLRNVWVHLD-GPGV 672 (731)
T ss_dssp CEEEEEEEEE-ETTT
T ss_pred cccceEEEEE-CCCC
Confidence 3 78887763 3343
No 179
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=33.57 E-value=51 Score=35.30 Aligned_cols=49 Identities=8% Similarity=0.001 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcC-CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhh
Q 001079 564 TKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYS 612 (1162)
Q Consensus 564 t~~Ai~~Yk~a~-R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~ 612 (1162)
.+.|+..|..+- .......+...+|.+|..+|++++|..+|..+.....
T Consensus 133 ~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p 182 (287)
T 3qou_A 133 YTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ 182 (287)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC
T ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc
Confidence 355666666652 1111224578899999999999999999998876544
No 180
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=33.45 E-value=75 Score=31.92 Aligned_cols=51 Identities=20% Similarity=0.083 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCC-cchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcC
Q 001079 564 TKGAANNYHCSWW-KRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGE 614 (1162)
Q Consensus 564 t~~Ai~~Yk~a~R-~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~e 614 (1162)
.+.|+..|.++-+ .-.-..+...+|..|+..|+|++|..+|..++......
T Consensus 70 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 121 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 4566666666531 11222457889999999999999999999999875544
No 181
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=32.99 E-value=1.1e+02 Score=37.57 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=39.3
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHH
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~ 642 (1162)
.+...+|..|+.+|+|++|...|..++...... | ..+..++.|+..+++.++=+.
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~-----~a~~~lg~~~~~~g~~~~A~~ 488 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWR-W-----RLVWYRAVAELLTGDYDSATK 488 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC-H-----HHHHHHHHHHHHHTCHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch-H-----HHHHHHHHHHHHcCCHHHHHH
Confidence 457789999999999999999999999875443 2 234455556666666544333
No 182
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=32.48 E-value=91 Score=34.13 Aligned_cols=61 Identities=25% Similarity=0.254 Sum_probs=43.6
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHh
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLL 648 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LL 648 (1162)
.+...+|..|+..|+|++|..+|..++...... ..++..++.|+.++++.++=+...-+.+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF------PDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC------HHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456789999999999999999999999754332 2345567777777777765444443333
No 183
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=30.09 E-value=1.2e+02 Score=31.44 Aligned_cols=71 Identities=15% Similarity=0.121 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCcchhHHhhHHHHHHHHh----cCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHH----hc
Q 001079 564 TKGAANNYHCSWWKRHGVVLDGEIAAVCFK----HGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKI----LN 635 (1162)
Q Consensus 564 t~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~----~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~----L~ 635 (1162)
.++|+..|.++-... .......||.+|+. .|++++|..+|..++.. + .......++.|+.. .+
T Consensus 94 ~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~ 164 (273)
T 1ouv_A 94 TNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL----N----DGDGCTILGSLYDAGRGTPK 164 (273)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc----C----cHHHHHHHHHHHHcCCCCCC
Confidence 356777777764332 23457788888888 88888888888888863 2 13455667777776 55
Q ss_pred cchhHHHH
Q 001079 636 DEAGYLLS 643 (1162)
Q Consensus 636 ~~~dYv~~ 643 (1162)
+.++-+..
T Consensus 165 ~~~~A~~~ 172 (273)
T 1ouv_A 165 DLKKALAS 172 (273)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 55443333
No 184
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=28.89 E-value=1.4e+02 Score=32.01 Aligned_cols=56 Identities=11% Similarity=0.002 Sum_probs=41.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhcc
Q 001079 589 AVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLSL 650 (1162)
Q Consensus 589 ~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs~ 650 (1162)
.++...|+|++|..+|..++..+... ..++..++.|+.++++.++-....-+++..
T Consensus 174 ~l~~~~~~~~eA~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 174 SLAAGGEKLQDAYYIFQEMADKCSPT------LLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHSCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCchHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44445699999999999999886542 456677888998999987766666555543
No 185
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=28.26 E-value=2.1e+02 Score=31.21 Aligned_cols=83 Identities=6% Similarity=-0.078 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCcch---hHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcc--hHHHHHHHHHHHHHHHhccch
Q 001079 564 TKGAANNYHCSWWKRH---GVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQ--DLLAEVLPNLAECQKILNDEA 638 (1162)
Q Consensus 564 t~~Ai~~Yk~a~R~Rs---a~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~--~L~~~~L~~~a~Clk~L~~~~ 638 (1162)
-+.|+..|..+.+... ...+..-+|..+-++|++++|...|..+.. |-. .....++...+-|++++|+.+
T Consensus 151 ~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~-----g~~~P~~~~da~~~~glaL~~lGr~d 225 (282)
T 4f3v_A 151 WTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND-----SPAGEACARAIAWYLAMARRSQGNES 225 (282)
T ss_dssp HHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----STTTTTTHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-----CCCCccccHHHHHHHHHHHHHcCCHH
Confidence 3456666665553220 123567788888889999999999998873 211 114557778888999999888
Q ss_pred hHHHHHHHHhccC
Q 001079 639 GYLLSCVRLLSLD 651 (1162)
Q Consensus 639 dYv~~~l~LLs~~ 651 (1162)
+=....=++++.+
T Consensus 226 eA~~~l~~a~a~~ 238 (282)
T 4f3v_A 226 AAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcC
Confidence 7777666666543
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=27.89 E-value=36 Score=39.85 Aligned_cols=60 Identities=20% Similarity=0.082 Sum_probs=46.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Q 001079 584 DGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLLSCVRLLS 649 (1162)
Q Consensus 584 ~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~~~l~LLs 649 (1162)
...+|..|+.+|+|++|..+|..++...... ...+..++.|+.++++.++=+..+-+.+.
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 68 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTECYGYALGDATRAIE 68 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4567888999999999999999999975554 56677888899888888765555555444
No 187
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=27.02 E-value=1.1e+02 Score=34.72 Aligned_cols=79 Identities=6% Similarity=-0.173 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCC-cchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHHhccchhHHH
Q 001079 564 TKGAANNYHCSWW-KRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDEAGYLL 642 (1162)
Q Consensus 564 t~~Ai~~Yk~a~R-~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~L~~~~dYv~ 642 (1162)
.+.|+..|.++=+ .-....+-..+|.+|..+|+|++|+.+|..++..-...- ..+...+.|+.++++.++-+.
T Consensus 148 ~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~------~a~~~lg~~~~~~g~~~eAl~ 221 (382)
T 2h6f_A 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY------HAWQHRQWVIQEFKLWDNELQ 221 (382)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHTCCTTHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCH------HHHHHHHHHHHHcCChHHHHH
Confidence 3445555555421 111123355667777777777777777777776443321 223344555666666655444
Q ss_pred HHHHHh
Q 001079 643 SCVRLL 648 (1162)
Q Consensus 643 ~~l~LL 648 (1162)
.+-+++
T Consensus 222 ~~~~al 227 (382)
T 2h6f_A 222 YVDQLL 227 (382)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 443333
No 188
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=26.93 E-value=1.7e+02 Score=26.07 Aligned_cols=52 Identities=13% Similarity=0.076 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcC-CcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcC
Q 001079 563 LTKGAANNYHCSW-WKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGE 614 (1162)
Q Consensus 563 Lt~~Ai~~Yk~a~-R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~e 614 (1162)
..+.|+..+..-. ..-.-..+...||..||++|++++|..++..++..--..
T Consensus 27 W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 27 WMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 4455555554321 011122457899999999999999999999998754433
No 189
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=26.92 E-value=49 Score=33.22 Aligned_cols=51 Identities=10% Similarity=0.072 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCCcc-hhHHhhHHHHHHHHhcC-----------CHHHHHHHHHHHHhhhh
Q 001079 562 ELTKGAANNYHCSWWKR-HGVVLDGEIAAVCFKHG-----------NYDQAAKSYEKVCALYS 612 (1162)
Q Consensus 562 ~Lt~~Ai~~Yk~a~R~R-sa~~L~~dLA~lyy~~g-----------dy~kA~~~f~~~~~~Y~ 612 (1162)
++.+.|+..|..+=+.. ........+|..|+.+| +|++|..+|..++..=-
T Consensus 60 ~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 60 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 36788888888874222 12234678999999885 89999999999887533
No 190
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.53 E-value=1.7e+02 Score=33.60 Aligned_cols=34 Identities=18% Similarity=0.083 Sum_probs=29.0
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCC
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEG 615 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~eg 615 (1162)
.+..++|.+|+..|||++|...|..+.......+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~ 165 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG 165 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH
Confidence 4578999999999999999999999887665543
No 191
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=25.34 E-value=1.7e+02 Score=30.18 Aligned_cols=75 Identities=19% Similarity=0.080 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCcchhHHhhHHHHHHHHh----cCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHHHHHH----hcc
Q 001079 565 KGAANNYHCSWWKRHGVVLDGEIAAVCFK----HGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKI----LND 636 (1162)
Q Consensus 565 ~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~----~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~Clk~----L~~ 636 (1162)
++|+..|.++-.... ......||.+|+. .|++++|..+|..++.. + ....+..++.++.. .++
T Consensus 59 ~~A~~~~~~a~~~~~-~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~ 129 (273)
T 1ouv_A 59 KKAASFYAKACDLNY-SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----K----YAEGCASLGGIYHDGKVVTRD 129 (273)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHCSSSCCC
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----C----CccHHHHHHHHHHcCCCcccC
Confidence 567777777643322 2446778888888 88888888888888764 2 13556667777777 666
Q ss_pred chhHHHHHHHHh
Q 001079 637 EAGYLLSCVRLL 648 (1162)
Q Consensus 637 ~~dYv~~~l~LL 648 (1162)
.++-+...-+.+
T Consensus 130 ~~~A~~~~~~a~ 141 (273)
T 1ouv_A 130 FKKAVEYFTKAC 141 (273)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 655444443333
No 192
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=24.16 E-value=2.3e+02 Score=31.48 Aligned_cols=103 Identities=12% Similarity=0.010 Sum_probs=76.7
Q ss_pred hHHHHhhcCHHHHHHHHHHHHHHHHHHHHhcCCcchhHHhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHH
Q 001079 544 PNLLKSLSSVEEFEQKYLELTKGAANNYHCSWWKRHGVVLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEV 623 (1162)
Q Consensus 544 ~~L~~ALsS~e~F~~~Yl~Lt~~Ai~~Yk~a~R~Rsa~~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~ 623 (1162)
..|++.+.+. +||+....+ .-.+.-|.+.++.-.|.-+..+=|....+.|++..|..+-..++.-|...+|.. ....
T Consensus 18 ~rl~~~I~~G-~yYEAhQ~~-Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~-~~~~ 94 (312)
T 2wpv_A 18 QRFENKIKAG-DYYEAHQTL-RTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKV-DDIS 94 (312)
T ss_dssp HHHHHHHHHT-CHHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC-SHHH
T ss_pred HHHHHHhhcc-ChHHHHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCC-CHHH
Confidence 5666666654 455444433 333344777777778888899999999999999999999999999999999987 4557
Q ss_pred HHHHHHHHHHhccc----hhHHHHHHHHhc
Q 001079 624 LPNLAECQKILNDE----AGYLLSCVRLLS 649 (1162)
Q Consensus 624 L~~~a~Clk~L~~~----~dYv~~~l~LLs 649 (1162)
+.+++++.+.+... ..|++.+++-.+
T Consensus 95 ~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~ 124 (312)
T 2wpv_A 95 VARLVRLIAELDPSEPNLKDVITGMNNWSI 124 (312)
T ss_dssp HHHHHHHHTTCCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCchHHHHHHHHHHHHh
Confidence 78888888876644 468887775443
No 193
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=20.56 E-value=1.3e+02 Score=29.77 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=32.4
Q ss_pred HhhHHHHHHHHhcCCHHHHHHHHHHHHhhhhcCCcchHHHHHHHHHHH
Q 001079 582 VLDGEIAAVCFKHGNYDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAE 629 (1162)
Q Consensus 582 ~L~~dLA~lyy~~gdy~kA~~~f~~~~~~Y~~egW~~L~~~~L~~~a~ 629 (1162)
-+..-||.=||+.|||.+|..|...++.. +-+|.. ...|+.+++
T Consensus 78 dcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~Q--A~~Lk~~Ie 121 (144)
T 1y8m_A 78 ECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQ--VGALKSMVE 121 (144)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHH--HHHHHHHHH
Confidence 35789999999999999999999988873 444532 344444444
Done!