BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001080
(1162 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|B Chain B, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|C Chain C, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|D Chain D, Crystal Structure Of Human Daam1 Fh2
Length = 419
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 100/200 (50%), Gaps = 14/200 (7%)
Query: 971 NNLKPYHWLKL-TRAMQGSLWAEAQKSDEASKAPEFDMSELESLFSAAAPNSDLXXXXXX 1029
N LK ++W KL ++G++W E D+ D+ +LE FSA D
Sbjct: 15 NALKSFNWSKLPENKLEGTVWTEI---DDTKVFKILDLEDLERTFSAYQRQQDFFVNSNS 71
Query: 1030 XXXXXXP---------KPERVQLIELRRANNCEIMLTKVKIPLPDLMGSVLALDDSA-LD 1079
K + + +I+ RRA NC I+L+++K+ ++ ++L +D+ L
Sbjct: 72 KQKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLP 131
Query: 1080 IDQVDNLIKFCPTKEEMEVLKNYNGDKGNLGKCEQFFLELMKVPRVESKLRVFSFKIQFQ 1139
D ++ L+KF P K ++++L+ + + + K ++F E+ ++ + +L+ FK +F
Sbjct: 132 KDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFA 191
Query: 1140 TQVSDLRTSLNIINSASEEA 1159
+V++++ + I S SEE
Sbjct: 192 ERVAEVKPKVEAIRSGSEEV 211
>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment
Length = 483
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 100/200 (50%), Gaps = 14/200 (7%)
Query: 971 NNLKPYHWLKL-TRAMQGSLWAEAQKSDEASKAPEFDMSELESLFSAAAPNSDLXXXXXX 1029
N LK ++W KL ++G++W E D+ D+ +LE FSA D
Sbjct: 13 NALKSFNWSKLPENKLEGTVWTEI---DDTKVFKILDLEDLERTFSAYQRQQDFFVNSNS 69
Query: 1030 XXXXXXP---------KPERVQLIELRRANNCEIMLTKVKIPLPDLMGSVLALDDSA-LD 1079
K + + +I+ RRA NC I+L+++K+ ++ ++L +D+ L
Sbjct: 70 KQKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLP 129
Query: 1080 IDQVDNLIKFCPTKEEMEVLKNYNGDKGNLGKCEQFFLELMKVPRVESKLRVFSFKIQFQ 1139
D ++ L+KF P K ++++L+ + + + K ++F E+ ++ + +L+ FK +F
Sbjct: 130 KDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFA 189
Query: 1140 TQVSDLRTSLNIINSASEEA 1159
+V++++ + I S SEE
Sbjct: 190 ERVAEVKPKVEAIRSGSEEV 209
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|H Chain H, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|G Chain G, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|F Chain F, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 467
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 60/112 (53%)
Query: 1047 RRANNCEIMLTKVKIPLPDLMGSVLALDDSALDIDQVDNLIKFCPTKEEMEVLKNYNGDK 1106
+ A N I L ++P ++ +L ++++ L + NLIK P E++++L +
Sbjct: 105 KTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEY 164
Query: 1107 GNLGKCEQFFLELMKVPRVESKLRVFSFKIQFQTQVSDLRTSLNIINSASEE 1158
+L + EQF + + VPR+ +L FK+QF QV +++ + + +A EE
Sbjct: 165 DDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEE 216
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|F Chain F, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|G Chain G, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|H Chain H, Autoinhibited Formin Mdia1 Structure
Length = 457
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 59/110 (53%)
Query: 1049 ANNCEIMLTKVKIPLPDLMGSVLALDDSALDIDQVDNLIKFCPTKEEMEVLKNYNGDKGN 1108
A N I L ++P ++ +L ++++ L + NLIK P E++++L + +
Sbjct: 88 AQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDD 147
Query: 1109 LGKCEQFFLELMKVPRVESKLRVFSFKIQFQTQVSDLRTSLNIINSASEE 1158
L + EQF + + VPR+ +L FK+QF QV +++ + + +A EE
Sbjct: 148 LAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEE 197
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|B Chain B, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|C Chain C, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|D Chain D, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
Length = 340
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 60/112 (53%)
Query: 1047 RRANNCEIMLTKVKIPLPDLMGSVLALDDSALDIDQVDNLIKFCPTKEEMEVLKNYNGDK 1106
+ A N I L ++P ++ +L ++++ L + NLIK P E++++L +
Sbjct: 15 KTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEY 74
Query: 1107 GNLGKCEQFFLELMKVPRVESKLRVFSFKIQFQTQVSDLRTSLNIINSASEE 1158
+L + EQF + + VPR+ +L FK+QF QV +++ + + +A EE
Sbjct: 75 DDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEE 126
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|E Chain E, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|C Chain C, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|B Chain B, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
Length = 402
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 12/187 (6%)
Query: 976 YHWLKLT-RAMQGSLWAEAQKSDEASKAPEFDMSELESLFS--AAAPNSDLXXXXXXXXX 1032
++W L + G++++E D+ + D+ E LF A P DL
Sbjct: 22 FNWTALKPNQINGTVFSEL---DDEKILEDLDLDRFEELFKTKAQGPALDLICSKNKTAQ 78
Query: 1033 XXXPKPERVQLIELRRANNCEIMLTKVKIPLPDLMGSVLALDDSALDIDQVDNLIKFCPT 1092
K V L+E RA N I L K ++ ++ D L +D V+ L++F PT
Sbjct: 79 KAASK---VTLLEANRAKNLAITLRKAGRSAEEICRAIHTFDLQTLPVDFVECLMRFLPT 135
Query: 1093 KEEMEVLKNYNGDKG---NLGKCEQFFLELMKVPRVESKLRVFSFKIQFQTQVSDLRTSL 1149
+ E+++L+ Y ++ L ++F L KV R+ ++ +F FQ + L L
Sbjct: 136 EAEVKLLRQYERERQPLEELAAEDRFMLLFSKVERLTQRMAGMAFLGNFQDNLQMLTPQL 195
Query: 1150 NIINSAS 1156
N I +AS
Sbjct: 196 NAIIAAS 202
>pdb|1D5R|A Chain A, Crystal Structure Of The Pten Tumor Suppressor
Length = 324
Score = 46.6 bits (109), Expect = 8e-05, Method: Composition-based stats.
Identities = 65/282 (23%), Positives = 110/282 (39%), Gaps = 57/282 (20%)
Query: 79 SEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFML 138
++++ V YP P L E + F + WLS +V +HC + G M+
Sbjct: 73 AKFNCRVAQYPFEDHNPPQL--ELIKPFCEDLDQWLSEDDNHVAAIHC-KAGKGRTGVMI 129
Query: 139 AALLIYRKQFTGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVSR--RNVGSEWP 196
A L++R +F Q+ LD + R+ + +PSQ RY+ Y S +N ++
Sbjct: 130 CAYLLHRGKFLKAQEALDFYGEVRTRDKKGVT-----IPSQRRYVYYYSYLLKN-HLDYR 183
Query: 197 PLDRALTLDCVILRVIPNFDGEGGCCPIF-------RIYGQD--PLMVADRTPKVLFSTP 247
P+ AL ++ IP F G G C P F +IY + P D+ F P
Sbjct: 184 PV--ALLFHKMMFETIPMFSG-GTCNPQFVVCQLKVKIYSSNSGPTRREDKFMYFEFPQP 240
Query: 248 KRSKLVRHYKQADCELVKIDIHCHIQGDVVLECISLDSDQEREEMMFRVMFNTAFIRSN- 306
+ GD+ +E + +++ MF NT FI
Sbjct: 241 ----------------------LPVCGDIKVEFFHKQNKMLKKDKMFHFWVNTFFIPGPE 278
Query: 307 ---------ILMLNRDEIDILWNSK--DLFSKEFRAEVLFSE 337
+L L ++++D K FS F+ ++ F++
Sbjct: 279 EVDNDKEYLVLTLTKNDLDKANKDKANRYFSPNFKVKLYFTK 320
>pdb|3N0A|A Chain A, Crystal Structure Of Auxilin (40-400)
Length = 361
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 96/219 (43%), Gaps = 29/219 (13%)
Query: 108 RSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQAPRELL 167
R+ +WL +NV ++HC G + ++ A+ I+ ++ + ++Y + P L
Sbjct: 104 RNMYNWLLQNPKNVCVVHC-LDGRAASSILVGAMFIFCNLYSTPGPAVRLLYAKRPGIGL 162
Query: 168 QLMSPLNPLPSQLRYLQYVSRRNVGSEWPPLDRALTLDCVILRVIPNFDGE-GGCCPIFR 226
PS RYL Y+ + P + LT+ + + +P F+ + GC P
Sbjct: 163 S--------PSHRRYLGYMCDLLADKPYRPHFKPLTIKSITVSPVPFFNKQRNGCRPYCD 214
Query: 227 IYGQDPLMVADRTPKVLFSTPKRSKLVRHYKQADCELVKIDIHCHIQGDVVLECISLDSD 286
+ ++ + +++T + ++ Y+ D ++ I + +QGDVV+ L S
Sbjct: 215 V------LIGETK---IYTTCADFERMKEYRVQDGKIF-IPLSITVQGDVVVSMYHLRST 264
Query: 287 -------QEREEMMFRVMFNTAFI--RSNILMLNRDEID 316
+ +F++ F+T FI + +L + E+D
Sbjct: 265 IGSRLQAKVTNTQIFQLQFHTGFIPLDTTVLKFTKPELD 303
>pdb|3AWF|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
Length = 346
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/246 (21%), Positives = 105/246 (42%), Gaps = 30/246 (12%)
Query: 106 FLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQAPRE 165
F+ ++ W++ +V+ +HC +GG ++++ L+ +F ++ L+ Y + R
Sbjct: 113 FIDDAKVWMTSDPDHVIAIHC-KGGKGRTGTLVSSWLLEDGKFDTAKEALE--YFGSRRT 169
Query: 166 LLQLMSPLNPL--PSQLRYLQYVSR--RNVGSEWPPLDRALTLDCVILRVIPNFDGEGGC 221
++ + SQ+RY+ Y + +N G + PP+ + L + V + I
Sbjct: 170 DFEVGDVFQGVETASQIRYVGYFEKIKKNYGGQLPPM-KKLKVTGVTITAIQG------- 221
Query: 222 CPIFRIYGQDPLM--VADRTPKVLFSTPKRSKLVRHYKQAD----CELVKIDIHCHIQGD 275
+ R G D M V++R +L + Y D CE+ + + GD
Sbjct: 222 --VGRGNGSDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPV---LAGD 276
Query: 276 VVLECISLDSDQER--EEMMFRVMFNTAFIRSNILMLNRDEIDILWNSK--DLFSKEFRA 331
+ + +S R + F FNT+ + + + L R+EID K ++ F
Sbjct: 277 IKVRFMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEIDNPHKKKTWKIYRDNFTV 336
Query: 332 EVLFSE 337
++ FS+
Sbjct: 337 KLTFSD 342
>pdb|3V0I|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576, E411f
Length = 324
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 55/255 (21%), Positives = 110/255 (43%), Gaps = 30/255 (11%)
Query: 99 TMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMI 158
T+ + F+ ++ W++ +V+ +HC +GG ++++ L+ +F ++ L+
Sbjct: 84 TLVDLLKFIDDAKVWMTSDPDHVIAIHC-KGGKGRTGTLVSSWLLEDGKFDTAKEALE-- 140
Query: 159 YKQAPRELLQLMSPLNPL--PSQLRYLQYVSR--RNVGSEWPPLDRALTLDCVILRVIPN 214
Y + R ++ + SQ+RY+ Y + +N G + PP+ + L + V + I
Sbjct: 141 YFGSRRTDFEVGDVFQGVFTASQIRYVGYFEKIKKNYGGQLPPMKK-LKVTGVTITAI-- 197
Query: 215 FDGEGGCCPIFRIYGQDPLM--VADRTPKVLFSTPKRSKLVRHYKQAD----CELVKIDI 268
G G R G D M V++R +L + Y D CE+ +
Sbjct: 198 -QGVG------RGNGSDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPV 250
Query: 269 HCHIQGDVVLECISLDSDQER--EEMMFRVMFNTAFIRSNILMLNRDEIDILWNSK--DL 324
+ GD+ + +S R + F FNT+ + + + L R+EID K +
Sbjct: 251 ---LAGDIKVRFMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEIDNPHKKKTWKI 307
Query: 325 FSKEFRAEVLFSEMD 339
+ F ++ FS+ +
Sbjct: 308 YRDNFTVKLTFSDAE 322
>pdb|3AWE|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
Length = 334
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 55/255 (21%), Positives = 110/255 (43%), Gaps = 30/255 (11%)
Query: 99 TMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMI 158
T+ + F+ ++ W++ +V+ +HC +GG ++++ L+ +F ++ L+
Sbjct: 94 TLVDLLKFIDDAKVWMTSDPDHVIAIHC-KGGKGRTGTLVSSWLLEDGKFDTAKEALE-- 150
Query: 159 YKQAPRELLQLMSPLNPL--PSQLRYLQYVSR--RNVGSEWPPLDRALTLDCVILRVIPN 214
Y + R ++ + SQ+RY+ Y + +N G + PP+ + L + V + I
Sbjct: 151 YFGSRRTDFEVGDVFQGVETASQIRYVGYFEKIKKNYGGQLPPMKK-LKVTGVTITAI-- 207
Query: 215 FDGEGGCCPIFRIYGQDPLM--VADRTPKVLFSTPKRSKLVRHYKQAD----CELVKIDI 268
G G R G D M V++R +L + Y D CE+ +
Sbjct: 208 -QGVG------RGNGSDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPV 260
Query: 269 HCHIQGDVVLECISLDSDQER--EEMMFRVMFNTAFIRSNILMLNRDEIDILWNSK--DL 324
+ GD+ + +S R + F FNT+ + + + L R+EID K +
Sbjct: 261 ---LAGDIKVRFMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEIDNPHKKKTWKI 317
Query: 325 FSKEFRAEVLFSEMD 339
+ F ++ FS+ +
Sbjct: 318 YRDNFTVKLTFSDAE 332
>pdb|3AWG|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
Length = 334
Score = 38.1 bits (87), Expect = 0.026, Method: Composition-based stats.
Identities = 54/255 (21%), Positives = 109/255 (42%), Gaps = 30/255 (11%)
Query: 99 TMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMI 158
T+ + F+ ++ W++ +V+ +HC + G ++++ L+ +F ++ L+
Sbjct: 94 TLVDLLKFIDDAKVWMTSDPDHVIAIHC-KAGKGRTGTLVSSWLLEDGKFDTAKEALE-- 150
Query: 159 YKQAPRELLQLMSPLNPL--PSQLRYLQYVSR--RNVGSEWPPLDRALTLDCVILRVIPN 214
Y + R ++ + SQ+RY+ Y + +N G + PP+ + L + V + I
Sbjct: 151 YFGSRRTDFEVGDVFQGVETASQIRYVGYFEKIKKNYGGQLPPMKK-LKVTGVTITAI-- 207
Query: 215 FDGEGGCCPIFRIYGQDPLM--VADRTPKVLFSTPKRSKLVRHYKQAD----CELVKIDI 268
G G R G D M V++R +L + Y D CE+ +
Sbjct: 208 -QGVG------RGNGSDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPV 260
Query: 269 HCHIQGDVVLECISLDSDQER--EEMMFRVMFNTAFIRSNILMLNRDEIDILWNSK--DL 324
+ GD+ + +S R + F FNT+ + + + L R+EID K +
Sbjct: 261 ---LAGDIKVRFMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEIDNPHKKKTWKI 317
Query: 325 FSKEFRAEVLFSEMD 339
+ F ++ FS+ +
Sbjct: 318 YRDNFTVKLTFSDAE 332
>pdb|3V0J|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Deletion Of 401-405
pdb|3V0J|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Deletion Of 401-405
Length = 334
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 50/244 (20%), Positives = 103/244 (42%), Gaps = 31/244 (12%)
Query: 106 FLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQAPRE 165
F+ ++ W++ +V+ +H +GG ++++ L+ +F ++ L+ + +
Sbjct: 106 FIDDAKVWMTSDPDHVIAIH-SKGGKGRTGTLVSSWLLEDGKFDTAKEALEY-FGSRRTD 163
Query: 166 LLQLMSPLNPLPSQLRYLQYVSR--RNVGSEWPPLDRALTLDCVILRVIPNFDGEGGCCP 223
+ Q + SQ+RY+ Y + +N G + PP+ + L + V + I
Sbjct: 164 VFQGVET----ASQIRYVGYFEKIKKNYGGQLPPM-KKLKVTGVTITAIQG--------- 209
Query: 224 IFRIYGQDPLM--VADRTPKVLFSTPKRSKLVRHYKQAD----CELVKIDIHCHIQGDVV 277
+ R G D M V++R +L + Y D CE+ + + GD+
Sbjct: 210 VGRGNGSDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPV---LAGDIK 266
Query: 278 LECISLDSDQER--EEMMFRVMFNTAFIRSNILMLNRDEIDILWNSK--DLFSKEFRAEV 333
+ +S R + F FNT+ + + + L R+EID K ++ F ++
Sbjct: 267 VRFMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEIDNPHKKKTWKIYRDNFTVKL 326
Query: 334 LFSE 337
FS+
Sbjct: 327 TFSD 330
>pdb|3V0E|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576(C363s)
Length = 324
Score = 37.0 bits (84), Expect = 0.070, Method: Composition-based stats.
Identities = 54/255 (21%), Positives = 109/255 (42%), Gaps = 30/255 (11%)
Query: 99 TMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMI 158
T+ + F+ ++ W++ +V+ +H +GG ++++ L+ +F ++ L+
Sbjct: 84 TLVDLLKFIDDAKVWMTSDPDHVIAIH-SKGGKGRTGTLVSSWLLEDGKFDTAKEALE-- 140
Query: 159 YKQAPRELLQLMSPLNPL--PSQLRYLQYVSR--RNVGSEWPPLDRALTLDCVILRVIPN 214
Y + R ++ + SQ+RY+ Y + +N G + PP+ + L + V + I
Sbjct: 141 YFGSRRTDFEVGDVFQGVETASQIRYVGYFEKIKKNYGGQLPPMKK-LKVTGVTITAI-- 197
Query: 215 FDGEGGCCPIFRIYGQDPLM--VADRTPKVLFSTPKRSKLVRHYKQAD----CELVKIDI 268
G G R G D M V++R +L + Y D CE+ +
Sbjct: 198 -QGVG------RGNGSDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPV 250
Query: 269 HCHIQGDVVLECISLDSDQER--EEMMFRVMFNTAFIRSNILMLNRDEIDILWNSK--DL 324
+ GD+ + +S R + F FNT+ + + + L R+EID K +
Sbjct: 251 ---LAGDIKVRFMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEIDNPHKKKTWKI 307
Query: 325 FSKEFRAEVLFSEMD 339
+ F ++ FS+ +
Sbjct: 308 YRDNFTVKLTFSDAE 322
>pdb|3V0D|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s)
pdb|3V0D|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s)
pdb|3V0F|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Ii
pdb|3V0F|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Ii
pdb|3V0G|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|C Chain C, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|D Chain D, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0H|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Complexed With D-Myo-
Inositol-1,4,5-Triphosphate
pdb|3V0H|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Complexed With D-Myo-
Inositol-1,4,5-Triphosphate
Length = 339
Score = 36.6 bits (83), Expect = 0.083, Method: Composition-based stats.
Identities = 54/255 (21%), Positives = 109/255 (42%), Gaps = 30/255 (11%)
Query: 99 TMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMI 158
T+ + F+ ++ W++ +V+ +H +GG ++++ L+ +F ++ L+
Sbjct: 99 TLVDLLKFIDDAKVWMTSDPDHVIAIH-SKGGKGRTGTLVSSWLLEDGKFDTAKEALE-- 155
Query: 159 YKQAPRELLQLMSPLNPL--PSQLRYLQYVSR--RNVGSEWPPLDRALTLDCVILRVIPN 214
Y + R ++ + SQ+RY+ Y + +N G + PP+ + L + V + I
Sbjct: 156 YFGSRRTDFEVGDVFQGVETASQIRYVGYFEKIKKNYGGQLPPMKK-LKVTGVTITAI-- 212
Query: 215 FDGEGGCCPIFRIYGQDPLM--VADRTPKVLFSTPKRSKLVRHYKQAD----CELVKIDI 268
G G R G D M V++R +L + Y D CE+ +
Sbjct: 213 -QGVG------RGNGSDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPV 265
Query: 269 HCHIQGDVVLECISLDSDQER--EEMMFRVMFNTAFIRSNILMLNRDEIDILWNSK--DL 324
+ GD+ + +S R + F FNT+ + + + L R+EID K +
Sbjct: 266 ---LAGDIKVRFMSTSKSLPRGYDNCPFYFWFNTSLVEGDHVTLKREEIDNPHKKKTWKI 322
Query: 325 FSKEFRAEVLFSEMD 339
+ F ++ FS+ +
Sbjct: 323 YRDNFTVKLTFSDAE 337
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
Length = 327
Score = 34.7 bits (78), Expect = 0.29, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 366 VQEIFSNVDWLDPKLDVAVNMLQHFTPSNFIQENLETALNAEKGSIMIESALEKDKEQL 424
V+EI S D++ P LD A ++ +P N+++ LE + A ++ E + D E++
Sbjct: 199 VEEIISRADFVKPSLDDARHLFGPDSPENYVKRYLELGVKAVILTLGEEGVIASDGEEI 257
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,903,212
Number of Sequences: 62578
Number of extensions: 899199
Number of successful extensions: 2030
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2015
Number of HSP's gapped (non-prelim): 18
length of query: 1162
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1053
effective length of database: 8,152,335
effective search space: 8584408755
effective search space used: 8584408755
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)